演題登録 発表番号
番号No.
5003

5006

⽒名

O−No.

Name

Affiliation

O01-01 Ella Morishita

O01-02 Atsushi

O08-01 Takeshi

Veritas In Silico Inc.

O05-02 Kazuyoshi
Yoshii

5013

5021

5029

O01-04 Yuki

O05-03 Flora R. Aigbe

O02-01 Tomoyasu
Sugiyama

5038

5041

発表時間

会場

Title of Presentation

Presentation

Venue

Suzuki

October 29

Small Molecule Therapies: Innovations in(Tue)Co.,Ltd

Based Molecular Design for a Cyclic Peptide(Tue)

Kagoshima University

Drug Discovery Platform
Quantum Chemistry-Based Protein-Protein

October 31

Docking without Any Empirical Parameters(Thu)

ZERIA Pharmaceutical

The effect of food on pharmacokinetics ofOctober 30

Ltd., Co.

acotiamide for the treatment of functional(Wed)dyspepsia
Machine learning approach to analyze DNA-October 29

encoded library screening data for hit(Tue)Kyushu Institute ofidentification
Scaffold-retained molecule generation

October 29

Technology

considering gene expression profiles with(Tue)Osaka University

deep learning
Computational exploration of bipolar disorder October 30
multi-omics data in the quest for novel drug

(Wed)Tokyo University oftargets
Deep leaning of new morphological

October 30

Techmology

characteristics of blood vessel in breast(Wed)cancer.
Biomimetic Multicellular Lipid-Based

October 30

Univ

Membranes for Stimulus-Responsive Drug(Wed)Tokyo Institute ofDelivery
Development of a Molecular Generative

October 29

Technology

model via the Decoupled Setting on Multi-(Tue)O04-01 Tsuyoshi Inaba Grad.Sci.Eng.,Tohoku

O01-05 Takamasa

Unveiling the Potential of RNA-Targeted

October 29

O01-03 Syunya Suzuki Nagoya University

Matsukiyo
5022

発表⽇
Presentation

Computational and Biophysical Approaches
Chugai Pharmaceutical Computational Chemistry and Structure-Ishikawa
5012

演題名DayMatsuo5007

所属

objective Bayesian Optimization

1Time
14:00-15:30

401 Meetingroom(4F)

14:00-15:30

401 Meetingroom(4F)

10:00-11:30

407 Meetingroom(4F)

10:00-11:30

406 Meetingroom(4F)

14:00-15:30

401 Meetingroom(4F)

14:00-15:30

401 Meetingroom(4F)

10:00-11:30

406 Meetingroom(4F)

10:00-11:30

Trainingroom(4F)

10:00-11:30

407 Meetingroom(4F)

14:00-15:30

401 Meetingroom(4F)

演題登録 発表番号
番号
No.
5046

O−No.

⽒名
Name

所属
Affiliation

5056

O01-06 DonnyOsaka University

O04-02 YIMING GONG Kyoto University

5059

発表時間

会場

Title of Presentation

PresentationVenue

Optimizing Multitask Learning withOctober 29

Evolutionary Metrics for Enhanced QSAR-(Tue)based Natural Product Activity Prediction
Physical Reservoir Computing Device Using

October 30

Active Matter Composed of a Swarm of(Wed)Tokyo Institute of

Biomolecular Motors.
Enhancing Drug-Target Interaction Prediction October 30

technology

using Large Language Models and Low-Rank (Wed)Osaka University

Adaptation
Prediction and Analysis of Protein-Ligand

October 31

Arfin

Complexes Through R-value Analysis of(Thu)

Fardiansyah

High-Temperature Molecular Dynamics

O02-02 Rintaro
Yashiro5058

発表⽇PresentationDay

Ramadhan5055

演題名

O08-02 Mochammad

Nasution
O05-04 Nina

Osaka University

Holsmoelle

Simulation
Learning the Language of Life: Feasibility ofOctober 30

Using LLMs to Understand Latent(Wed)Time
14:00-15:30

401 Meetingroom(4F)

10:00-11:30

407 Meetingroom(4F)

10:00-11:30

Trainingroom(4F)

10:00-11:30

407 Meetingroom(4F)

10:00-11:30

406 Meetingroom(4F)

Characteristics of Proteins from Residue
5062

O05-05 Tatsunori

Okayama University

Osone
5067

O03-01 Piyatida

Osaka University

Natsrita
5073

5078

O02-03 Shuya Nakata

Kobe University

O02-04 Kotaro Kamiya SyntheticGestalt KK

Structural Environments
SGCRNA: A Novel Tool for Gene Co-October 30

Expression Network Analysis Using Spectral(Wed)Clustering
Construction of Flavivirus database andOctober 30

therapeutic antibody discovery(Wed)using machine learning algorithm
Exploring Synthetically Accessible Chemical

October 30

Spaces with Product-of-Expert Chemical(Wed)Language Models
Feature Design of Molecular 3D Structures

October 30

for Fast Approximate Nearest Neighbor(Wed)

Search2

10:00-11:30

406 Meetingroom(4F)

10:00-11:30

401 Meetingroom(4F)

10:00-11:30

Trainingroom(4F)

10:00-11:30

Trainingroom(4F)演題登録 発表番号
番号
No.
5088

O−No.

⽒名
Name

演題名

発表⽇

発表時間

会場

Title of Presentation

Presentation

Presentation

Venue

所属
AffiliationDay

O09-02 Ken Komiya

Japan Agency for

Experimental validation of a modified

Marine-Earth Science & Whiplash PCR for profiling temporal andOctober 31

Time
10:00-11:30(Thu)

406 Meetingroom(4F)

Technology (JAMSTEC) coexistence patterns of nucleic acids
5092

O07-02 Takashi

Rigaku Corporation

Matsumoto
5093

5097

Relationship between cyclic peptide structure October 31
in solution and membrane permeability(Thu)O02-05 Shumpei

The University of Tokyo Clmpy: A platform for Chemical Language

NemotoModel comparable training and structure(Wed)generation ability
Leveraging LLMs for Quantum Chemistry: A

October 31

Comparative Study of Input File Generation(Thu)O09-05 Gergely Juhasz Tokyo Institue ofTechnology

10:00-11:30

October 30

401 Meetingroom(4F)

10:00-11:30

Trainingroom(4F)

10:00-11:30

406 Meetingroom(4F)

for Gaussian, DFTB+, and ORCA
5098

O04-03 Soichiro Hiroi

Graduate School of Arts GAN-Based Multi-Axis Resolution-Enhanced October 30
and Science, The5104

3D Visualization of Giant Vesicles(Wed)

University of Tokyo
O04-04 Haruto Obuchi The University of Tokyo, Investigation on heterogeneous pairs of cell- October 30
Graduate School of Arts sized liposomes formed in a microfluidicand Sciences,

10:00-11:30

407 Meetingroom(4F)

10:00-11:30(Wed)

407 Meetingroom(4F)

deviceDepartment of Basic
5107

ScienceO06-06 Yuji Sakahashi National Cerebral andCardiovascular Center

Analysis of the usefulness of AlphaMissense October 31
score for predicting protein function.
-Evaluation by GLA , the causative gene ofFabry disease-3(Thu)

10:00-11:30

Trainingroom(4F)演題登録 発表番号
番号No.
5114

⽒名O−No.

NameAffiliation

O09-04 Shuichiro

Kitasato Institute

会場

Title of Presentation

Presentation

Venue

October 31

the Integration and Utilization of Multimodal(Thu)

O04-05 Ibuki

Bioactivity Information
Integrated web user interface for DNA

October 30

nanotechnology including coarse-grained(Wed)

molecular dynamics simulation
Open Molecule Generator: A Multipurpose

October 30

Molecule LLM(Wed)

Institute for Chemical

Fragment descriptors in predictive modeling

October 30

Reaction Design andfor molecules and reactions(Wed)

Discovery (ICReDD)
Nagoya University

3D structure-based chemical foundation

October 31

model to predict the bioactivity and toxicity(Thu)Osaka University

Application of machine learning to single-cell October 30

Kyoto University

O03-03 David Jimenez Elix, Inc
Barrero

5121

発表時間

Designing an Information Infrastructure forKawamata
5119

発表⽇
PresentationDay

Makigaki
5118

演題名

所属

O02-06 Pavel Sidorov

5125

O06-01 Tsuyoshi

5126

O03-04 Yosui Nojima

KimuraRNA sequencing provides the candidate

Time
10:00-11:30

406 Meetingroom(4F)

10:00-11:30

407 Meetingroom(4F)

10:00-11:30

401 Meetingroom(4F)

10:00-11:30

Trainingroom(4F)

10:00-11:30

Training

10:00-11:30

401 Meetingroom(4F)(Wed)room(4F)

drugs against drug-tolerant persister cells in5127

O06-02 Yuto
Matsumoto

Yokohama National

colorectal cancer
Comparison Between Word Embeddings andOctober 31

University

Molecular Descriptors by Clustering and(Thu)

10:00-11:30

Trainingroom(4F)

Distribution Analysis from Antioxidant
5130

O03-05 Hayato
TsumuraDepartment ofArticles
Predicting Novel Therapeutic Target

Biomedical Data

Molecules Using Neural Networks: Validation (Wed)Intelligence, Graduate

and Applicability to Unknown Diseases

October 30

10:00-11:30

401 Meetingroom(4F)

School of Medicine,5134

O05-06 ReikoWatanabe

Kyoto University
Institute for Protein

Exploring cancer treatment candidates

October 30

Research, Osakatargeting chromatin remodeling factors(Wed)

University

4

10:00-11:30

406 Meetingroom(4F)演題登録 発表番号
番号
No.
5135

5138

O−No.

⽒名
Name

Affiliation

発表⽇

発表時間

会場

Title of Presentation

Presentation

Presentation

Venue

Day

O03-06 Iori Yamahata

O08-03 Atsuhiro

Nagoya University

Design of Receptor Selective Cell-Penetrating October 30

Graduate School ofPeptides Using Deep Learning andMedicineSimulations
Preferred Networks, inc. Conditional structure prediction of protein-Tomita5143

演題名

所属

O06-03 Yasuhiro
Yoshikaicompound complex(Wed)
October 31
October 31

molecules by Graph Transformer VAE(Thu)

AlphaFold protein 3D structures enhance

October 30

401 Meetingroom(4F)

10:00-11:30(Thu)

The University of Tokyo Reconstructable latent representation ofGraduate School ofTime
10:00-11:30

407 Meetingroom(4F)

10:00-11:30

Trainingroom(4F)

PharmaceuticalSciences
5144

O05-01 Yuga
MoriyamaYamanishi Laboratory,Department of Complex genome-wide scale compound-protein
Systems Science,

10:00-11:30(Wed)

406 Meetingroom(4F)interaction prediction with deep learning

Graduate School ofInformatics, Nagoya
5145

O07-01 Joshua

UniversityElix, Inc.

Owoyemi
5148
5154

O03-02 Mori Kenichi
O07-03 Hideto

O08-04 Ai Shinobu

10:00-11:30

Virtual Synthesis-Based Molecule Generation (Thu)
Astellas Pharma Inc.
Nagoya University

Digital Transformation on Small Molecule

October 30

Optimization Research at Astellas Pharma(Wed)

Efficient docking simulation-based

October 31

Osaka University

generative models
Integrating Mathematical Modeling andOctober 31

Molecular Dynamics Simulations to study the (Thu)
effect of EGFR Mutations in Lung Cancer

5

401 Meetingroom(4F)

10:00-11:30

401 Meetingroom(4F)

10:00-11:30

generation of bioactive compounds with deep (Thu)

Hoshino5155

SynthFormer: A Customizable Framework for October 31

401 Meetingroom(4F)

10:00-11:30

407 Meetingroom(4F)

演題登録 発表番号
番号
No.
5161

O−No.

⽒名
Name5179

5180

Affiliation

O08-05 Natsuki

発表⽇

発表時間

会場

Title of Presentation

Presentation

Presentation

Venue

Graduate School ofLarge-Scale MD-Based CPI Prediction Using

October 31

Medicine, Kyoto

Supercomputer Fugaku(Thu)

Optimization of Generator Reward Function

October 31

Settings for Non-covalent KRAS Inhibitors(Thu)

Development of Scaffold and Fragment

October 31

Definition Algorithms with a Case Study on(Thu)

University
O07-04 Casey J. Galvin Elix, Inc.
O07-05 Kazuma Kaitoh Nagoya University

O04-06 Hirotaka

Kansai University

Kondo
5182

演題名DayKanazawa
5174

所属

O08-06 Chiduru

RIKEN BDR

Chemical Library Analysis
Development of a Supervised Deep Learning October 30
Method for DNA Sequence Estimation from(Wed)DNA Images
Progress of data collection in FMO database

October 31

Time10:00-11:30

room(4F)
10:00-11:30

401 Meetingroom(4F)

10:00-11:30

401 Meetingroom(4F)

10:00-11:30

407 Meetingroom(4F)

10:00-11:30

and efforts to evaluate structural qualities of (Thu)

Watanabe

407 Meeting

407 Meetingroom(4F)

biological macromolecules using quantum
chemical interaction energy analysis
5183

5190

O06-04 Tomoki

Graduate School ofTowards the Design of Natural Product

October 31

KawanoAgricultural and Life

Biosynthetic Gene Clusters Using Natural(Thu)

Sciences, The

Language Processing Technology

University of Tokyo
National Institutes ofStructure and stability of glycan interaction

October 31Biomedical Innovation,

network on the HIV envelope glycoprotein(Thu)

Development of a sustainable database forOctober 31

middle molecules using AI-driven data(Thu)O09-06 Suyong Re

10:00-11:30

Trainingroom(4F)

10:00-11:30

406 Meetingroom(4F)

Health and Nutrition5192

O09-03 Kazuyoshi
Ikeda(NIBIOHN)
RIKEN

curation6

10:00-11:30

406 Meetingroom(4F)

演題登録 発表番号
番号
No.
5194

5196

O−No.

⽒名
Name

所属
Affiliation

発表⽇

発表時間

会場

Title of Presentation

Presentation

Presentation

VenueDay

O06-05 MASAKAZUTokyo Institute of

Design of Novel Compounds ThroughSEKIJIMA

Technology

Protein-Ligand Interaction-Based Generative (Thu)

O07-06 Yukinobu

Tokyo TechMethods
Deep Learning-Based Protein-Protein

October 31

Interaction Prediction Considering Angle(Thu)

Matsuno5198

演題名

O09-01 Shin-ichiro M. Graduate school ofNomura

October 31

Information
Towards the Construction of Next-Generation October 31

Engineering, Tohoku

Molecular Robots with Quick Motion andUniversity

Information Processing

7(Thu)

Time
10:00-11:30

Trainingroom(4F)

10:00-11:30

401 Meetingroom(4F)

10:00-11:30

406 Meetingroom(4F)