KUBIC-NII Joint Seminar on Bioinformatics

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KUBIC-NII Joint Seminar on Bioinformatics 2013
organized by
Bioinformatics Center, Institute for Chemical Research, Kyoto University andNational Institute of Informatics

Date
Friday, April 19, 2013
Venue
Kyoto University, Uji, Kyoto 611-0011, Japan
Bioinformatics Center, Institute for Chemical Research,
3F, Seminar Room CB316.
Access• Location and Transportation to Uji Campus of Kyoto University.
• Vicinity of Uji Campus.
• Uji Campus Map.
Participants (alphabetical)
Tatsuya Akutsu

Institute for Chemical Research, Kyoto University, Japan

Earl Bellinger

Indiana University Bloomington, USAJ.B. Brown

Graduate School of Pharmaceutical Sciences, Kyoto University, Japan

Morihiro Hayashida

Institute for Chemical Research, Kyoto University, Japan

Katsumi Inoue

National Institute of Informatics, JapanJesper Jansson

The Hakubi Project, Kyoto University, Japan

Hitoshi Koyano

Institute for Chemical Research, Kyoto University, Japan

Morgan Magnin

Institut de Recherche en Communications et Cybertétique de Nantes (IRCCyN), École Centrale deNantes, France

Avraham Melkman

Ben-Gurion University of the Negev, Israel

Tenda OkimotoTransdisciplinary Research Integration Center, Japan

Tony Ribeiro

The Graduate University for Advanced Studies (SOKENDAI), JapanAlexandre Rocca

Grenoble INP Ensimag, FranceAdrien Rougny

University Paris-Sud, France

Takeyuki Tamura

Institute for Chemical Research, Kyoto University, Japan

Programme
9:30 - 10:00

Opening

10:00 - 10:20

Tatsuya Akutsu
A Dominating Set Approach to Controllability of Scale-free Networks.

10:20 - 10:50

J.B. Brown
Drug discovery and the need for new post-ligation downstream network analysis algorithms incorporating
contextualization.

10:50 - 11:10

Avraham Melkman
Nested canalyzing SAT-formulae and their satisfaction.

11:10 - 11:20

Break

http://research.nii.ac.jp/il/event/2013/KUBIC-NII_2013/2013/05/09

KUBIC-NII Joint Seminar on Bioinformatics

11:20 - 11:40

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Katsumi Inoue*, Tony Ribeiro, Chiaki Sakama
Learning from Interpretation Transition and its Applications to Boolean Networks and Cellular Automata.

11:40 - 12:00

Tony Ribeiro*, Katsumi Inoue, Chiaki Sakama
Learning from Interpretation Transition Using an Efficient OBDD-Like Structure.

12:00 - 13:30

Lunch

13:30 - 14:00

Morgan Magnin*, Maxime Folschette, Katsumi Inoue, Loic Pauleve, Olivier Roux, Olivier Roux, Gilles Bernot,
Jean-Paul Comet, Adrien Richard
Inference in Biological Regulatory Networks: From Discrete Parameters to Timing Information.

14:00 - 14:20

Jesper Jansson
Computing the Rooted Triplet Distance between Galled Trees by Counting Triangles.

14:20 - 14:40

Hitoshi Koyano
Probability theory on the monoid of strings and its application to molecular ecology.

14:40 - 15:00

Coffe Break

15:00 - 15:20

Morihiro Hayashida
Predicting protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso.

15:20 - 15:40

Adrien Rougny*, Christine Froidevaux, Katsumi Inoue, Yoshitaka Yamamoto
Translating the Systems Biology Graphical Notation to Logic.

15:40 - 16:00

Takeyuki Tamura
On the complexity of the maximum common subgraph problem for partial k-trees of bounded degree.

16:00 - 16:20

Coffe Break

16:20 - 16:40

Alexandre Rocca*, Morgan Magnin, Katsumi Inoue
CTL and ASP for Model-Checking of Biological Boolean Networks.

16:40 - 17:00

Earl Bellinger*, Hei Chan, Katsumi Inoue
Asynchronously Updated Elementary Cellular Automata with Random Perturbations.

17:00 - 17:20

Tenda Okimoto* and Katsumi Inoue
A Study for Multi-Objective Distributed Constraint Optimization.

Contact
Tony Ribeiro: tony_ribeiro at nii.ac.jp
Webmaster: Tony Ribeiro (E-mail tony_ribeiro at nii.ac.jp)
Last modified 04/12/2013 22:01:53

http://research.nii.ac.jp/il/event/2013/KUBIC-NII_2013/2013/05/09