JSBiポスター一覧表 (Poster List)◆ポスターID番号の見方(Poster ID number)◆ポスター発表（掲示）場所(Poster Presentation:Place)（ポスター番号：Poster ID）（ポスター台番号：Poster board number）

JSBiーXX↑
個別番号(ID number)

1 ～100 ：３F ﾚｾﾌﾟｼｮﾝﾎｰﾙ(Recept. Hall)
101～142 ： ４F ４０３会議室
143～160 ： ４F ラウンジ (Lounge)

3F Recept.
4F 403
4F Lounge◆発表日時 (Duty Time)
奇数 ポスター台番号： 8日12:00-14:00 (Poster board number -Odd# November 8th)
偶数 ポスター台番号： 9日12:00-14:00 (Poster board number -Even# November 9th)

ポスター番号（Poster ID)

著者 （Authors)

題目（Title）

ポスター台番号(下線：偶数)（Posterboard No.）

Molecular Network Analysis of MicroRNA Targets
JSBi-1

Jun-Ichi Satoh and Hiroko Tabunoki.

Suggests Aberrant Expression of Cell Cycle

1Regulators in Alzheimer’s Disease Brains
JSBi-2

Yoshihiko Hasegawa and Masanori
Arita.
Kazuhiro Takemoto, Takeyuki Tamura,

JSBi-3JSBi-4

Yang Cong, Wai-Ki Ching, Jean-Philippe
Vert and Tatsuya Akutsu.
Shingo Iwami, Kei Sato and Yoshio
Koyanagi.

JSBi-5

Akihiro Hirakawa and Chikuma Hamada.

JSBi-6

Ryuzo Azuma and Takuo Yasunaga.

JSBi-7
JSBi-8Junichi Araki and Kiyoko F.AokiKinoshita.

Analysis of Positive Feedback in Genetic Oscillators
Estimating Metabolic Network Robustness Using
Branching Process Approximation
Mathematical modeling of wild type and Vpr-deleted
HIV-1 infection in vitro
FDR-based Sample Size Calculation for a
Regularized T-statistic in Microarray Experiments
Iterative method for 3D reconstruction ofultrastructures in cryo-electron microscopy
Development of a data curation system in FlyGlycoDB

Shuhei Kaneko, Kana Yamada, Akihiro

Gene Selection using a High-Dimensional Cox ModelHirakawa and Chikuma Hamada.

in Microarray Data Analysis

681115
1822
24

Development and Releasing of New Databases forJSBi-9

Hiroshi Wako and Shigeru Endo.

JSBi-10

Paul Horton.

JSBi-11

Sachiyo Aburatani.

JSBi-12
JSBi-13
JSBi-14
JSBi-15

Protein Dynamics: ProMode-Oligomer and ProModeElastic
fastapl and fastqpl, flexible tools for processing fasta
and fastq format data
Reconstruction of Transcriptional Regulatory Networkby Structural Equation Modeling

Edward Wijaya, Hamada Michiaki andProtein-Coding Based Assembly of Metagenomic

Kiyoshi Asai.

Next-Generation Sequencing Data

Kentaro Inoue, Shinichi Shimozono and Hybrid Grid Layout Algorithm For Biochemical
Hiroyuki Kurata.

Network Maps

Daniel Berrar, Philippe Lopes andThe area under the ROC curve: an incoherent

Akihiko Konagaya.

performance measure for biomedical classiﬁers

Mihoko Saito and Tsuyoshi Shirai.

Classification of PDB ligands with fast graph matchingalgorithm

12632
35
36
373942

ポスター番号（Poster ID)

JSBi-16
JSBi-17

著者 （Authors)

題目（Title）

Yuki Kato, Kengo Sato, Kiyoshi Asai and Rtips: Fast and Accurate Tools for RNA 2D Structure
Tatsuya Akutsu.
Michio Iwata and Fumihide Shiraishi.

Prediction Using Integer Programming
Rapid estimation of kinetic parameters in S-system
type models for metabolic reaction networks

ポスター台番号(下線：偶数)（Posterboard No.）

4345

Masaaki Kotera, Toshiaki Tokimatsu,
JSBi-18

JSBi-19

JSBi-20

Zen-Ichi Nakagawa, Ai Muto, Yuki

Ontological classification of KEGG Reaction ClassMoriya, Minoru Kanehisa and Susumu

and updates of KEGG Chemical Function Format

Goto.
Mukaide Takahiro, Akatsuka Shinya and Distribution analysis of restriction enzyme recognition
Toyokuni Shinya.

Kengo Sato, Yuki Kato, Tatsuya Akutsu, Simultaneous aligning and folding of RNA sequences
Kiyoshi Asai and Yasubumi Sakakibara. by dual decomposition
Hideaki Sugawara, Takao Iwayanagi,

JSBi-21
JSBi-22
JSBi-23
JSBi-24
JSBi-25
JSBi-26
JSBi-27
JSBi-28

Keiichi Homma, Hisashi Mizutani, Junko
Sato and Haruki Nakamura.
Masaki Watabe, Kazunari Kaizu andKoichi Takahashi.
Megumi Fujita, Masaaki Kotera,
Toshiaki Tokimatsu, Minoru Kanehisa
and Susumu Goto.
Genki Terashi, Tetsuo Shibuya andMayuko Takeda-Shitaka.
Wataru Iwasaki, Yasunori Yamamoto
and Toshihisa Takagi.

JSBi-32
JSBi-33
JSBi-34
JSBi-35

Spatial gradient sensing limit in Dictyostelium
discoiduem cell
Evolutionary analysis of 3’UTR length in eukaryotictranscripts
LB3D: Fast protein 3D substructure search program
Recommendation and Efficient Management of Life

molecular evolution
Mutation-aware clustering with error correction for

Takenaka and Hideo Matsuda.
Tazro Ohta, Hiromasa Ono, Yuki Naito,

short-read genome mapping

Takeru Nakazato, Akinori Yonezawa
Osamu Maruyama.

Nacher, Hiroshi Nagamochi and Tatsuya

For the age of open-source biology: development ofthe tools for large-scale public databases.
Supervised Learning of Heterodimeric Protein
Complexes
Protein complex prediction via improved verification
methods using constrained domain-domain matching

Junko Tsuji, Martin Frith, Kentaro Tomii

Common Features of DSB-mediated Exogenous DNAand Paul Horton.

Integration Sites in Mammalian Nuclear Genomes

Yasumasa Shigemoto, Sei Miyamotoand Hideaki Sugawara.
Kazushi Hiranuka, Diego Diez, Nicolas
Joannin, Minoru Kanehisa and Susumu
Goto.
Takeyuki Tamura, Yang Cong, Tatsuya

Knowledgebase of Influenza Virus by DDBJ RDF
Clustering analysis of antigenically variable genefamilies of protozoan parasites
Computing Impact Degrees for Multiple Reactions inAkutsu and Wai-Ki Ching.
Metabolic Networks with Cycles
Sayaka Mizutani, Michihiro Tanaka and Phylogenetic analysis of leukotriene biosynthesis
Susumu Goto.

48

49

50
52
54
55

TogoDoc Server/Client System: Smart

Matsuyama and Tamotsu Noguchi.
Daisuke Ueta, Shigeto Seno, Yoichi

Akutsu.
JSBi-31

Research Program

Shuichi Hirose, Hajime Hanawa, Yasuo

Yang Zhao, Morihiro Hayashida, JoseJSBi-30

An Information Platform for Targeted Proteins

Science LiteratureAnalysis of intrinsically disordered proteins based on

and Hidemasa Bono.
JSBi-29

sites for mammalian genomes

47

enzymes

25657
59
67

69

70

72
74
78
7982

ポスター番号（Poster ID)

JSBi-36

JSBi-37

JSBi-38
JSBi-39
JSBi-40
JSBi-41
JSBi-42

著者 （Authors)
Yoichi Murakami, Kengo Kinoshita andExhaustive comparison of representative partial

Haruki Nakamura.
surfaces of ligand binding sites in proteins
Atsushi Fukushima, Tomoko Nishizawa,
Exploring tomato gene functions based on
Mariko Hayakumo, Shoko Hikosaka,
coexpression modules using graph clustering
Kazuki Saito, Eiji Goto and Miyako
approachesKusano.
Hiroyuki Toh, Hiromi Daiyasu,
Computational Analysis of Ligand Recognition
Takatsugu Hirokawa and Narutoshi
Mechanisms by Prostanoid Receptors
Kamiya.
Masahiro Hamano, Ibuki Kawamata,
Kinetic Simulations of RNA-interference: Primer
Nathanael Aubert and Masami Hagiya.
Daisuke Tominaga.

Dependent and Independent Synthesis of dsRNA
Statistical Method to Search for the Optimal Divisionof Quantitative Time Series Data
Keiichiro Takahashi, Ichigaku Takigawa Enumerating Biclusters on Gene Expression Data byand Hiroshi Mamitsuka.
Mitsunori Kayano, Seiya Imoto, Rui

Mining Frequent Itemsets
A partial correlation approach for estimating metabolic

Yamaguchi and Satoru Miyano.

networks from multi-omics data
Algorithms for computing thermodynamic entropy of

JSBi-43

Hisanori Kiryu and Kiyoshi Asai.

JSBi-44

Yoichi Murakami and Kenji Mizuguchi.

JSBi-45

題目（Title）

Satoshi Komori, Satoshi Fujii andAkinori Sarai.

RNA secondary structures.
Protein-protein interaction prediction using AODE
based on sequence, domain and network information
Construction and Analysis of Protein-Protein
Interaction Network Based on Domain and Non-

ポスター台
番号(下線：偶数)（Posterboard No.）

91

92

93
95
96
97
98
99
106
111

Domain Interactions

Sung-Joon Park, Makiko Komata,
JSBi-46

Fukashi Inoue, Kaori Yamada, Kenta

Transcriptome Analysis of Mouse Early Embryo

Nakai, Miho Ohsugi and KatsuhikoDevelopment by RNA Sequencing

112

Shirahige.
Wataru Fujibuchi, Sachiyo Aburatani,
JSBi-47

Junko Yamane, Satoshi Imanishi, Hiromi Prediction of Chemical Toxicity by Network-based
Akanuma, Hideko Sone and Seiichiroh

SVM on ES-cell Validation System114

Ohsako.
Chie Motono, Ryotaro Koike, Kana
Shimizu, Matsuyuki Shirota, Takayuki
Amemiya, Kentaro Tomii, Nozomi
JSBi-48

Nagano, Naofumi Sakaya, Kiyotaka
Misoo, Miwa Sato, Akinori Kidera,
Hidekazu Hiroaki, Tsuyoshi Shirai,

SAHG, a comprehensive database of predictedstructures of all human proteins, and structure

115

prediction pipeline for eukaryotic proteins

Kengo Kinoshita, Tamotsu Noguchi andMotonori Ota.
JSBi-49
JSBi-50

Tatsuya Kitaguchi, Shigeto Seno, Yoichi Network analysis for time-series expression profile
Takenaka and Hideo Matsuda.
Hiroaki Iwata and Osamu Gotoh.

using nested effects models
Evaluation of Spliced Alignment Programs using
Cross-Species Benchmark Datasets

123124

Masashi Ikeda, Yuh Sugii, Kazuki
Kumon, Kazuya Omoto, Akifumi
JSBi-51

Mizutani, Tomonari Kasai, Takayuki
Kudoh, Shinobu Umemura-Masuda and

Identification of TNBC-related genes and clustering ofbreast cancer cases by spherical self-organizing map

Masaharu Seno.

3129

ポスター番号（Poster ID)

JSBi-52
JSBi-53
JSBi-54

JSBi-55

著者 （Authors)

題目（Title）

Minoru Sugihara, Wataru Fujibuchi andStructural elements of the signal propagation pathway

Makiko Suwa.

in GPCRs: Case study for squid and bovine rhodopsin

Masae Hosoda and Kiyoko F. AokiKinoshita.
Canh Hao Nguyen and Hiroshi
Mamitsuka.
Kana Shimizu, Hiromi Arai, Michiaki

ポスター台
番号
(下線：偶数)（Posterboard No.）130

Development of a Multiple Glycan Alignment Tool

133

Link Prediction on PPI and GRN networks

139

Hamada, Koji Tsuda, Takatsugu

Privacy preserving search for chemical compound

Hirokawa, Jun Sakuma and Kiyoshi

libraries

140

Asai.
JSBi-56
JSBi-57

Lisa Uechi and Akutsu Tatsuya.

Conservation Laws and Symmetries in Competitive
Systems

Peiying Ruan, Morihiro Hayashida andGrammar-Based Image Compression and Its

Tatsuya Akutsu.

Application to Comparison of Distance Maps

141
143

Yoshinori Fukasawa, Raymond Wan,
JSBi-58

Junko Tsuji, Szu-Chin Fu, Noriyuki

MoiraiSP: a novel mitochondrial cleavage site

Sakiyama, Kenichiro Imai and Paulpredictor

144

Horton.
JSBi-59
JSBi-60

Shujiro Okuda.
Maori Ito, Jun-Ichi Ito, Tetsuji Kuboyama
and Kentaro Tomii.
Takanori Hasegawa, Rui Yamaguchi,

JSBi-61Masao Nagasaki, Seiya Imoto andSatoru Miyano.

JSBi-62
JSBi-63

JSBi-64

Martin Haubrock and Edgar Wingender.
Toshiaki Katayama and Shinobu

Comparative analysis of functional diversity ofenvironmental genomes
Developing a new similarity matrix ofmonosaccharides based on mechanisms of protein-147
148

glycan interactions
Automatic Pathway Extension and Model Estimation
via Data Assimilation“Seed sites” constitute a reliably predictable coretranscription network
Prototyping RDF-based extensible semantic genome

Okamoto.
Taichiro Sugisaki, Hiroki Makiguchi,

annotation database

Reiko Reiko Imanishi, Toshiyuki

Life science database cross search system thatOkumura, Nobutaka Mitsuhashi, Shoko

developed by Integrated Database Project of MEXT

150
153
155

156

Kawamoto and Toshihisa Takagi.
JSBi-65

David Duverle and Hiroshi Mamitsuka.

Improving Gene Regulatory Network Inference using
Network Motifs with Time Course Expression Data4157