8th Japan-Korea Seminars on Biomolecular Science: Experiments and Simulation
ProgramDate: February 15 – 17, 2016
Venue: Okazaki Conference Center ( http://www.orion.ac.jp/occ-e/ )February 15 (Mon)【Chair: Takumi Yamaguchi】
10:00-10:25
Steven P. Gross (UC Irvine, and KIAS)
Single molecular motor heterogeneity and its implications for ensemble function
10:25-10:45
Akihiko Nakamura (IMS)(short talk)Analysis of functional structure of cellulase by neutron crystallography
10:45-11:10
Ryota Iino (IMS)
Direct observation of intermediate states during the stepping motion of kinesin-1
11:10-11:35
Sota Sato (Tohoku Univ. & JST)
Biological functions implanted in artificial supramolecules
11:35-11:55
Takayoshi Watanabe (Japan Adv. Inst. of Sci. & Tech.)(short talk)
Novel method for site-specific protein pegylation using aromatic amine-containing non-naturalamino acid11:55-13:30

Lunch【Chair: Ryota Iino】
13:30-13:55
Keehyoung Joo (KIAS)
Contact Assisted Protein Structure Modeling by Global Optimization in CASP11
13:55-14:20
Nam Ki Lee (POSTECH)
New single-molecule FRET method for observing fast dynamics and its application for dsDNA
bending dynamics
14:20-14:45
Masahide Terazima (Kyoto Univ.)
Time-resolved study on conformation change and inter-domain change during protein reactions
14:45-15:10
Kunihiro Kuwajima (Tokyo Univ.)
The H/D-exchange kinetics of a fully unfolded protein studied by the DMSO-quenched and 2D
NMR techniques
15:10-15:40

coffee break【Chair: Julian Lee】
15:40-16:00
Balachandran Manavalan (KIAS)(short talk)
StrRate: Structure-based protein folding type classification and folding rate prediction
16:00-16:20
Seung Hwan Hong (KIAS)(short talk)
Template based modeling by dynamic fragment assembly: revisited
16:20-16:45
Ji-Joon Song (KAIST)	 
Understanding molecular Architecture of Huntington’s disease protein
17:30-Banquet

Februry 16 (Tue)【Chair: Changbong Hyeon】
10:00-10:25
Fumio Hirata (Ritsumeikan Univ.)
Multi-scale dynamics simulation of protein based on the generalized Langevin equation combinedwith 3D-RISM theory
10:25-10:45
InSuk Joung (KIAS)(short talk)Efficient sampling of transition pathways using nudged elastic band and conformational space
annealing
10:45-11:10
Hisashi Okumura (IMS)
Pressure induced structural change of proteins by molecular dynamics simulations
11:10-11:35
Seokmin Shin (Seoul National Univ.)
The two faces of self-assembly of peptides
11:35-12:00
Jooyoung Lee (KIAS)
Atomistic mechanism of conformational transition of adenylate kinase investigated by Lorentzian
structure-based potential
12:00-13:30

Lunch【Chair: Jooyoung Lee】
13:30-13:55
Chaok Seok (Seoul National Univ.)
Galaxy7TM: Modeling and docking of G-protein coupled receptors
13:55-14:15
Takumi Yamaguchi (Japan Adv. Inst. of Sci. & Tech.)(short talk)
Design and creation of Lewis X-expressing glycoclusters toward functional analyses ofoligosaccharides in membrane systems
14:15-14:40
Kazushi Kinbara (Tokyo Inst. of Tech.)
Development of Stimuli-Responsive Multiblock Amphiphilic Molecules Mimicking Multipass
Transmembrane Proteins
14:40-15:05
Weontae Lee (Yonsei Univ.)
NMR and X-ray crystallographic studies on syndecan, proteogylcan: Structure, function anddiseases
15:05-15:35

coffee break【Chair: Weontae Lee】
15:35-16:00
Shinobu Itoh (Osaka Univ.)
Activation mechanism of fungal tyrosinase
16:00-16:25
Masafumi Odaka (Akita Univ.)
Time-resolved crystallography of the reaction intermediate of nitrile hydratase: Revealing a role
for the cysteinesulfenic acid ligand as a catalytic nucleophile
16:25-16:50
Shuji Akiyama (IMS)
Atomic-scale origins of slowness in the cyanobacterial circadian clock
16:50-17:15

Dong Hae Shin (Ewha Womans Univ.)
Structural properties of GmhA and GmhB from Burkholderia thailandensis

18:00-Free Discussion

February 17 (Wed)【Chair: Koichi Kato】
10:00-10:25
Takeshi Uchida (Hokkaido Univ.)
Heme uptake proteins from Vibrio cholerae
10:25-10:50
Hiroshi Sugimoto (RIKEN/SPring-8)
Structural mechanism of the heme transporter complex from pathogenic bacteria
10:50-11:10
Norifumi Muraki (IMS)(short talk)
Crystal structures of HtaA and HmuT, heme uptake proteins from Corynebacterium glutamicum
11:10-11:35
Jeong-Yong Suh (Seoul National Univ.)
Structural basis for the preferential interaction of auxin-response transcriptional repressor withdifferent transcription factors
11:35-11:55
Saeko Yanaka (IMS)(short talk)Affinity improvement of antibody through mutational modification of the conformationaldynamics
11:55-13:30

Lunch【Chair: Shigetoshi Aono】
13:30-13:55
Susumu Uchiyama (Osaka Univ.)
Mass spectrometry of protein-ligand interactions
13:55-14:20
Takafumi Ueno (Tokyo Inst. of Tech.)Protein Crystals for Designing Biohybrid Solid Materials
14:20-14:45
Tadashi Satoh (Nagoya City Univ.)
Structural insights into the working mechanisms of multi-domain enzymes involved in ER protein
quality control
14:45-15:05
Jaeyoung Byeon (Soongsil Univ.)(short talk)Protein contact prediction based on information theory
15:05-15:35

coffee break【Chair: Kunihiro Kuwajima】
15:35-16:00
Julian Lee (Soongsil Univ.)
Prediction of protein rigid domains and hinge residues based on graph theory and elastic networkmodel
16:00-16:25
Takahiro Kosugi (IMS)
De novo design of protein function
16:25-16:50
Changbong Hyeon (KIAS)
Mapping allosteric signaling of G protein-coupled receptors