< Year 2003>

Kishida H., Wada T., Unzai S., Kuzuyama T., Takagi M., Terada T., Shirouzu M., Yokoyama S., Tame J.
R., and Park S.-Y.: “Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate(MECDP) synthase, an enzyme in the non-mevalonate pathyway of isoprenoid synthesis” Acta Cryst.
D59, 23-31 (2003)
BL44B2
Temiakov D., Vassylyev D., Tahirov T. H., Anikin M., McAllister W.T., and Yokoyama S.: “Crystalizationand preliminary crystallographic analysis of T7 RNA polymerase elongation complex” Acta Cryst. D59,
185-187 (2003).
Goto M., Agari Y., Omi R., Miyahara I., and Hirotsu, K.: “Expression, purification and preliminary X-ray
characterization of N-acetyl- -glutamyl-phosphate reductase from Thermus thermophilus HB8” Acta
Cryst. D59, 356-358 (2003)
BL44B2
Fujihashi M., Peapus D. H., Nakajima E., Yamada T., Saito J., Kita A., Higuchi Y., Sugawara Y., Ando A.,
Kamiya N., Nagata Y. and Miki K.: “X-ray crystallographic characterization and phasing of afucose-specific lectin from Aleuria aurantia” Acta Cryst. D59, 378-380 (2003).
Goto M., Omi R., Hoseki J., Nakagawa N., Miyahara I., and Hirotsu K.: “Expression, purification andpreliminary X-ray characterization of CTP synthetase from Thermus thermophilus HB8” Acta Cryst. D59,
551-553 (2003).
BL44B2
Nakai T., Nakagawa N., Maoka N., Masui R., Kuramitsu S. and Kamiya N.: “Coexpression, purification,
crystallization and preliminary X-ray characterization of glycine decarboxylase (P-protein) of theglycine-cleavage system from Thermus thermophilus HB8” Acta Cryst. D59, 554-557 (2003) BL45XU
Kaminishi T., Sakai H., Takemoto-Hori C., Terada T., Nakagawa N., Maoka N., Kuramitsu S., Shirouzu
M., and Yokoyama S.: “Crystallization and preliminary X-ray diffraction analysis of ribosomal protein
L11 methyltransferase from Thermus thermophilus HB8” Acta Cryst. D59, 930-932 (2003)
BL44B2
Wada T., Shirouzu M., Terada T., Ishizuka Y., Matsuda T., Kigawa T., Kuramitsu S., Park S.-Y., Tame J.
R., and Yokoyama S.: “Structure of a conserved CoA-binding protein synthesized by a cell-free system”
Acta Cryst. D59, 1213-1218 (2003)
BL44B2/BL41XU/BL40B2
Takeda K., Miyatake H., Yokota N., Matsuyama S., Tokuda H., and Miki K.: “Crystallization andpreliminary crystallographic study of the outer membrane lipoprotein receptor LolB, a member of thelipoprotein localization factors” Acta Cryst. D59, 1224-1226 (2003)
BL38B1/BL44B2
Takeda K., Miyatake H., Yokota N., Matsuyama S., Tokuda H., and Miki K.: “A practical phasing
procedure of MAD method without the aid of XAFS measurements: Successful solution in the structure
determination of the outer membrane lipoprotein carrier LolA” Acta Cryst. D59, 1440-1446 (2003)
BL38B1/BL44B2
Nakai T., Ishijima J., Masui R., Kuramitsu S., and Kamiya N.: “Sturecture of Thermus thermophilus HB8
H-protein of the glycine-cleavage system, resolved by a six-dimensional molecular-replacement method”

Acta Cryst. D59, 1610-1618 (2003)

BL44B2

Taguchi Y., Hoseki J., Kakuta Y., and Fukuyama K.: “Overproduction, crystallization and preliminary
X-ray diffraction analysis of probable ATP sulfurylase from Thermus thermophilus HB8” Acta Cryst. D59,
1645-1647 (2003)
BL44B2
Vassylyeva M. N., Sakai H., Matsuura T., Sekine S., Nishiyama M., Terada T., Shirouzu M., Kuramitsu S.,
Vassylyev D. G., and Yokoyama S.: “Cloning, expression, purification, crystallization and initial
crystallographic analysis of the lysine biosynthesis LysX protein from Termus thermophilus HB8” Acta
Cryst. D59, 1651-1652 (2003)
BL45XU
Yoshiba S., Nakagawa N., Masui R., Shibata T., Inoue Y., Yokoyama S., and Kuramitsu S.:“Overproduction, crystallization and preliminary diffraction data of ADP-ribose pyrophosphatase from
Thermus thermophilus HB8” Acta Cryst. D59, 1840-1842 (2003)
BL44B2
Takeishi S., Nakagawa N., Maoka N., Kihara M., Moriguchi M., Masui R., and Kuramitsu S.:“Crystallization and preliminary X-ray diffraction studies of nucleoside diphosphate kinase from Thermus
thermophilus HB8” Acta Cryst. D59, 1843-1845 (2003)
BL44B2/BL45XUKim S.-H., Miyatake H., Hisano T., Ohtani N., and Miki K.: “Crystallization and preliinary X-ray
analysis of a small component of 4-hydroxyphenyl-acetate 3-monooxygenase (HpaC) and its cofactor
complex from Thermus thermophilus HB8” Acta Cryst. D59 2275-2278 (2003)
BL44B2/BL45XU
Lokanath N. K., Shiromizu I., Nodake Y., Sugahara M., Yokoyama S., Kuramitsu S., Miyano M., andKunishima N.: “Crystallization and preliminary X-ray crystallographic studies of NADP-dependent
3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8” Acta Cryst. D59, 2294-2296(2003)
BL26B1Ishida M., Dohmae N., Shiro Y., and Isogai Y.: “Synthesis of biotinylated heme and its application topanning heme-binding proteins” Analy. Biochem. 321, 138-141 (2003)
Fujikawa N., Kurumizaka H., Yamazoe M., Hiraga S., and Yokoyama S.: “Identification of functional
domains of the Escherichia coli SeqA protein” Biochem. Biophys. Res. Commun. 300, 699-705 (2003)
Seo H., Okuhara K., Kurumizaka H., Yamada T., Shibata T., Ohta K., Akiyama T., and Murofushi H.:“Incorporation of DUF/FACT into chromatin enhances the accessibility of nucleosomal DNA” Biochem.
Biophys. Res. Commun. 303, 8-13 (2003)
Akimoto S., Tanaka A., Nakamura K., Shiro Y., and Nakamura H.: “O2 specific regulation of the ferrous
heme-based sensor kinase FixL from Sinorhizobium meliloti and its aberrant inactivation in the ferricform” Biochem. Biophys. Res. Commun. 304, 136-142 (2003)
Kobayashi A., Kokubo T., Ota Y., and Yokoyama S.: “Promoter-specific function of the TATA element in
undifferentiated P19 cells” Biochem. Biophys. Res. Commun. 310, 458-463 (2003)

Koulougliotis D., Shen J..R., Ioannidis N., and Petrouleas V.: “Near-IR irradiation of the S2 state of thewater oxidizing complex of photosystem II at liquid helium temperatures produces the metalloradical
intermediate attributed to S1YZ” Biochemistry 42, 3045-3053 (2003).
Fujikura K., Zhang Y.-W., Fujihashi M., Miki K., and Koyama T.: “Mutational analysis of allylic substratebinding site of Micrococcus luteus B-P 26 undecaprenyl diphosphate synthase” Biochemistry 42,4035-4041 (2003)
Sawai H., Kawada N., Yoshizato K., Nakajima H., Aono S., and Shiro Y.: “Characterization of the heme
environmental structure of cytoglobin, a fourth globin in humans” Biochemistry 42, 5133-5142 (2003)
Yamashita A., Endo M., Higashi T., Nakatsu T., Yamada Y., Oda J., and Kato H.: “Capturing enzyme
structure prior to reaction initiation: tropinone reductase-II-substrate complexes” Biochemistry 42,
5566-5573 (2003)
Fujihashi M., Peapus D. H., Kamiya N., Nagata Y., and Miki K.: “Crystal structure of fucose-specificlectin from Aleuria aurantia binding ligands at three of its five sugar recognition sites” Biochemistry 42,11093-11099 (2003)
Noguchi T., Nojiri M., Takei K. Odaka M., and Kamiya N.: “Protonation structures of Cys-Sulfinic and
Cys-Sulfenic acids in the photosensitive nitrile hydratase revealeld by fourier transform infrared
spectroscopy” Biochemistry 42, 11642-11650 (2003)
Kumita H., Yamada S., Nakamura H., and Shiro Y.: “Chimeric sensory kinases containing O2 sensor
domain of FixL and histidine kinase domain from thermophile” Biochim. Biophys. Acta 1646, 136-144(2003).
Suzuki Y., Taguchi S., Hisano T., Toshima K., Matsumura S., and Doi Y.: “Correlation between structureof the lactones and substrate specificity in enzyme-catalyzed polymerization for the synthesis ofpolyesters” Biomacromolecules 4, 537-543 (2003)
Yamashita A., Maeda K. and Maéda Y.: “Structural basis for actin filament capping and targeting by
CapZ” Biophys. J. 84, 257a, (2003)
Iwamoto H., Wakayama J., Fujisawa T., and Yagi N.: “Static and dynamic X-ray diffraction recordings
from living mammalian and amphibian skeletal muscles” Biophys. J. 85, 2492-2506 (2003)
Ishitani R., Nureki O., Nameki N., Okada N., Nishimura S., and Yokoyama S.: “Alternative tertiary
structure of tRNA for recognition by a posttranscriptional modification enzyme” Cell 113, 383-394(2003)
Uchida T., Takamiya M., Takahashi M., Miyashita H., Ikeda H., Terada T., Matsuo Y., Shirouzu M.,
Yokoyama S., Fujimori F., and Hunter T.: “Pin1 and Par14 peptidyl prolyl isomerase inhibitors block cellproliferation” Chem. Biol. 10, 15-24 (2003)
Wear M. A., Yamashita A., Kim K., Maéda Y., and Cooper J. A.: “How capping protein binds the barbed

end of the actin filament” Current Biology 13, 1531-1537 (2003)
Yokoyama S.: “Protein expression systems for structural genomics and proteomics” Curr. Opin. Chem.
Biol. 7, 39-43 (2003).
Hamada K., Shimizu T., Yonemura S., Tsukita S., Tsukita S., and Hakoshima T.: “Structural basis ofadhesion-molecule recognition by ERM proteins revealed by the crystal structure of the radixin-ICAM-2
complex” EMBO J. 22, 502-514 (2003).
Sekine S., Nureki O., Dubois Y. D., Bernier S., Chenevert R., Lapointe J., Vassylyev G. D., andYokoyama S.: “ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNAbinding” EMBO J. 22, 676-688 (2003)
BL41XU/BL45XU
Yamashita A., Maeda K., and Maéda Y.: “Crystal structure of CapZ: Structural basis for actin filamentbarbed end capping” EMBO J. 22, 1529-1538 (2003)
BL44B2/BL45XU
Takeda K., Miyatake H., Yokota N., Matsuyama S., Tokuda H., and Miki K.: “Crystal structures ofbacterial lipoprotein localization factors, LolA and LolB” EMBO J. 22, 3199-3209 (2003)
BL38B1/BL44B2
Okabe M., Tomita K., Ishitani R., Ishii R., Takeuchi N., Arisaka F., Nureki O., and Yokoyama S.:“Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme
structure” EMBO J. 22, 5918-9827 (2003)
Sakata E., Yamaguchi Y., Kurimoto E., Kikuchi J., Yokoyama S., Yamada S., Kawahara H., Yokosawa H.,
Hattori N., Mizuno Y., Tanaka K., and Kato K.: “Parkin binds the Rpn10 subunit of 26S proteasomes
through its ubiquitin-like domain”, EMBO Rep. 4, 301-306 (2003)
Someya T., Nameki N., Hosoi H., Suzuki S., Hatanaka H., Fujii M., Terada T., Shirouzu M., Inoue Y.,
Shibata T., Kuramitsu S., Yokoyama S., and Kawai G.: “Solution structure of a tmRNA-binding protein,
SmpB, from Thermus thermophilus” FEBS Lett. 535, 94-100 (2003)
Hayashi F., Suzuki H., Iwase R., Uzumaki T., Miyake A., Shen J. R., Imada K., Furukawa Y., Yonekura K.,
Namba K., and Ishiura M.: “ATP-induced hexameric ring structure of the cyanobacterial circadian clock
protein KaiC ” Genes to Cells 8, 287-296 (2003).
Ito N., Nureki O., Shirouzu M., Yokoyama S., and Hanaoka F.: “Crystal structure of the Pyrococcus
horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis” Genes to
Cells 8, 913-923 (2003)
Fujisawa T., Nishikawa Y., Yamazaki H. and Inoko Y.: “Evaluation and improvements of the Rigaku
imaging plate reader(R-Axis IV++) for the use in synchrotron X-ray solution scattering” J. Appl. Cryst.
36, 535-539 (2003)
Takahashi Y., Nishikawa Y., and Fujisawa T.: “Evaluation of three algorithms for ab initio determinationof three-dimensional shape from one-dimensional solution scattering profiles” J. Appl. Cryst. 36, 549-552

(2003)
Shimomura Y., Kakuta Y., and Fukuyama K.: “Crystal structures of the quinone oxidoreductase from
Thermus thermophilus HB8 and its complex with NADPH: implication for NADPH and substrate
recognition” J. Bacteriol.. 185, 4211-4218 (2003)
BL41XU
Irikura D., Kumasaka T., Yamamoto M., Ago H., Miyano M., Kubata K. B., Sakai H., Hayaishi O., andUrade Y.: “Cloning, expression, crystallization, and preliminary x-ray analysis of recombinant mouse
lipocalin-type prostaglandin D synthase,a somnogen-producing enzyme ” J. Biochem. 133, 29-32 (2003).
BL45XU
Takaya N., Kuwazaki S., Adachi Y., Suzuki S., Kikuchi T., Nakamura H., Shiro Y., and Shoun H.:“Hybrid respiration in the denitrifying mitochondria of Fusarium oxysporum” J. Biochem. 133, 461-465(2003)
Kharel Y., Zhang Y.-W., Fujihashi M., Miki K., and Koyama T.: “Significance of highly conserved
aromatic residues in Micrococcus luteus B-P 26 undecaprenyl diphosphate synthase” J. Biochem. 134,
819-826 (2003)
Hisano T., Tsuge T., Fukui T., Iwata T., Miki K., and Doi Y.: “Crystal structure of the (R)-specificenoyl-CoA hydratase from Aeromonas caviae involved in polyhydroxyalkanoate biosynthesis” J. Biol.
Chem. 278, 617-624 (2003)
BL44B2Endo M., Shirouzu M., and Yokoyama S.: “The Cdc42 binding and scaffolding activities of the fission
yeast adaptor protein Scd2” J. Biol. Chem. 278, 843-852 (2003)
Oshima A., Doi T., Mitsuoka K., Maeda S., and Fujiyoshi F.: “Roles of Met-34, Cys-64, and Arg-75 in theassembly of human connexin 26” J. Biol. Chem. 278, 1807-1816 (2003)
Yokoyama H., Kurumizaka H., Ikawa S., Yokoyama S., and Shibata T.: “Holliday junction binding
activity of the human Rad51B protein” J. Biol. Chem. 278, 2767-2772 (2003).
Nakano H., Yoshida T., Uchiyama S., Kawachi M., Matsuo H., Kato T., Ohshima A., Yamaichi Y., Honda
Takeshi, Kato H., Yamagata Y., Ohkubo T., and Kobayashi Y.: “Structure and binding mode of a ribosome
recycling factor(RRF) from mesophilic bacterium” J. Biol. Chem. 278, 3427-3436 (2003).
Lee D.-S., Yamada A., Sugimoto H., Matsunaga I., Ogura H., Ichihara K., Adachi S., Park S-Y., and Shiro
Y.: “Substrate recognition and molecular mechanism of fatty acid hydroxylation by cytochrome P450
from Bacillus subtiles” J. Biol. Chem. 278, 9761-9767 (2003)
Sakuraba H., Tsuge H., Shimoya I., Kawakami R., Goda S., Kawarabayasi Y., Katunuma N., Ago H.,
Miyano M., and Ohshima T.: “The first crystal structure of archaeal aldolase” J. Biol. Chem. 278,
10799-10806 (2003)
Makino R., Obayashi E., Homma N., Shiro Y., and Hori H.: “YC-1 facilitates release of the proximal his
residue in the NO and CO complexes of soluble guanylate cyclase” J. Biol. Chem. 278, 11130-11137

(2003)Mori H., Tsukazaki T., Masui R., Kuramitsu S., Yokoyama S., Johnson A., Kimura Y., Akiyama Y., and
Ito K.: “Fluorescence resonance energy transfer analysis of protein translocase: SecYE from Thermus
thermophilus HB8 forms a constitutive oligomer in membranes” J. Biol. Chem. 278, 14257-14264 (2003)
Goto M., Omi R., Miyahara I., Sugahara M., and Hirotsu K.: “Structures of argininosuccinate synthetasein enzyme-ATP substrates and enzyme-AMP product forms” J. Biol. Chem. 278, 22964-22971 (2003)
BL44B2/BL41XU/BL40B2
Nonaka T., Fujihashi M., Kita A., Hagihara H., Ozaki K., Ito S., and Miki K.: “Crystal structure ofcalcium-free α-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites” J.
Biol. Chem. 278, 24818-24824 (2003)
BL40B2/BL44B2/BL45XU
Wada T., Kuzuyama T., Satoh S., Kuramitsu S., Yokoyama S., Unzai S., Tame J. R. H., and Park S.-Y.,“Crystal structure of 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an enzyme in the
non-mevalonate pathway of isoprenoid synthesis” J. Biol. Chem. 278, 30022-30027 (2003) BL44B2
Ishii R., Nureki O., and Yokoyama S., “Crystal structure of the tRNA processing enzyme RNase PH from
Aquifex aeolicus.” J. Biol. Chem. 278, 32397-32404 (2003)
Tanaka M., Machida Y., Nishikawa Y., Akagi T., Hashikawa T., Fujisawa T., and Nukina N.: “Expansionof polyglutamine induces the formation of quasi-aggregate in the early stage of protein fibrillization” J.
Biol. Chem. 278, 34717-34724 (2003)
Okuno T., Ago H., Terawaki K., Miyano M., Shimizu T., and Yokomizo T.: “Helix 8 of the leukotriene B4
receptor is required for the conformational change to the low affinity state after G-protein activation” J.
Biol. Chem. 278, 41500-41509 (2003)
Iizuka R., Yoshida T., Shomura Y., Miki K., Maruyama T., Odaka M., and Yohda M.: “ATP binding is
critical for the conformational change from an open to closed state in archaeal group II chaperonin” J.
Biol. Chem. 278, 44959-44965 (2003)
Omi R., Goto M., Miyahara I, Mizuguchi H., Hayashi H., Kagamiyama H., and Hirotsu K.: “Crystal
structure of threonine synthase from Thermus thermophilus HB8” J. Biol. Chem. 278, 46035-46045(2003)
BL44B2
Hamada K., Ago H., Sugahara M., Nodake Y., Kuramitsu S., and Miyano M.: “Oxyanion Hole-stabilized
stereospecific isomerization in Ribose-5-phosphate Isomerase (Rpi)” J. Biol. Chem. 278, 49183-49190(2003)BL45XU/PX
Tawaramoto M. S., Park S.-Y., Tanaka Y., Nureki O., Kurumizaka H., and Yokoyama S.: “Crystal
structure of the human centromere protein B (CENP-B) dimerization domain at 1.65-Å resolution” J. Biol.
Chem. 278, 51454-51461 (2003)
Tashiro M., Okubo S., Shimotakahara S., Hatanaka H., Yasuda H., Kainosho M., Yokoyama S., andShindo H.: “Letter to the Editor: NMR structure of ubiquitin-like domain in PARKIN: gene product offamilial Parkinson's disease” J. Biomol. NMR 25, 153-156 (2003)
Matsui Y., Sakai K., Murakami M., Shiro Y., Adachi S., Okumura H., and Kouyama T.: “Specific damage
induced by X-ray radiation and structural changes in the primary photoreaction of bacteriophodopsin” J.
Mol. Biol. 324, 469-481 (2003).
Oda T., Crane Z. D., Dicus C. W., Sufi B. A., and Bates R. B.: “Dolastatin 11 connects two long-pitch
strands in F-actin to stabilize microfilaments” J. Mol. Biol. 328, 319-324 (2003)
Kato M., Shirouzu M., Terada T., Yamaguchi H., Murayama K., Sakai H., Kuramitsu S., and Yokoyama
S.: “Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8” J. Mol. Biol. 329,
903-911 (2003)
BL44B2
Sakai H., Vassylyeva M. N., Matsuura T., Sekine S., Gotoh K., Nishiyama M., Terada T., Shirouzu M.,
Kuramitsu S., Vassylyev D. G., and Yokoyama S.: “Crystal structure of a lysine biosynthesis enzyme,
LysX, from Thermus thermophilus HB8” J. Mol. Biol. 332, 729-740 (2003)
BL44B2/BL45XU
Hoseki J., Okamoto A., Masui R., Shibata T., Inoue Y., Yokoyama S., and Kuramitsu S.: “Crystal structureof a family 4 uracil-DNA glycosylase from Thermus thermophilus HB8” J. Mol. Biol. 333, 515-526(2003)BL45XU
Tanaka T., Kuroda Y., and Yokoyama S.: “Characteristics and prediction of domain linker sequences in
multi-domain proteins” J. Struct. Funct. Genomics, 4, 79-85 (2003)
Polycarpo C., Ambrogelly A., Ruan B., Tumbula-Hansen D., Ataide S. F., Ishitani R., Yokoyama S.,
Nureki O., Ibba M., and Söll D.: “Activation of the Pyrrolysine Suppressor tRNA Requires Formation of
a Ternary Complex with Class I and Class II Lysyl-tRNA Synthetases” Mol. Cell 12, 287-294 (2003)
Burgess A. W., Cho H. S., Eigenbrot C., Ferguson K. M., Garrett T. P. J., Leahy D. J., Lemmon M. A.,
Sliwkowski M. X., Ward C. W., and Yokoyama S.: “An Open-and-Shut Case? Recent Insights into theActivation of EGF/ErbB Receptors” Mol. Cell 12, 541-552 (2003)
Saito K., Ito E., Hosono K., Nakamura K., Imai K., Iizuka T., Shiro Y., and Nakamura H.: “Theuncoupling of oxygen sensing, phosphorylation signalling and transcriptional activation in oxygen sensor
FixL and FixJ mutants” Mol. Microbio. 48, 373-383 (2003)
Miyazawa A., Fujiyoshi F., and Unwin N.: “Structure and gating mechanism of the acetylcholine receptor
pore” Nature 423, 949-955 (2003)
Takeda S., Yamashita A., Maeda K. and Maéda Y.: “Structure of the core domain of human cardiac
troponin in the Ca2+ -saturated form” Nature 424, 35-41 (2003)
Yamauchi E., Nakatsu T., Matsubara M., Kato H., and Taniguchi H.: “Crystal structure of MARCKS
calmodulin-binding domain peptide complexed with Ca2+-calmodulin.” Nat. Struct. Biol. 10, 226-231(2003)BL45PX

Inoue T., Irikura D., Okazaki N., Kinugasa S., Matsumura H., Uodome N., Yamamoto M., Kumasaka T.,
Miyano M., Kai Y., and Urade Y.: “Mechanism of metal activation of human hematopoietic prostaglandin
D synthase” Nat. Struct. Biol. 10, 291-296 (2003)
BL45XU
Kobayashi T., Nureki O., Ishitani R., Yaremchuk A., Tukalo M., Cusack S., Sakamoto K., and Yokoyama
S.: “Structural basis for Orthogonal tRNA Specificities of Tyrosyl-tRNA Synthetases for genetic-Codeexpansion” Nat. Struct. Biol. 10, 425-432 (2003)
BL41XU
Yoshimasu M., Aihara H., Ito Y., Rajesh S., Ishibe S., Mikawa T., Yokoyama S., and Shibata T.: “AnNMR study on the interaction of Escherichia coli DinI with RecA-ssDNA complexes” Nucleic Acids Res.
31, 1735-1743 (2003)
Fujikawa N., Kurumizaka H., Nureki O., Terada T., Shirouzu M., Katayama T., and Yokoyama S.:“Structural basis of replication origin recognition by the DnaA protein” Nucleic Acids Res. 31, 2077-2086(2003)BL41XU
Kurumizaka H., Enomoto R., Nakada M., Eda K., Yokoyama S., and Shibata T.: “Region and amino acidresidues required for Rad51C binding in the human Xrcc3 protein” Nucleic Acids Res. 31, 4041-4050(2003)
Takai K., and Yokoyama S.: “Roles of 5-substituents of tRNA wobble uridines in the recognition ofpurine-ending codons” Nucleic Acids Res. 31, 6383-6391 (2003)
Takada K., Hori-Takemoto C., Kawazoe M., Lee S., Shirouzu M., Yokoyama S., Muto A., and Himeno
H.: “In vitro analysis of the initial steps of trans-translation” Nucleic Acid Res. Suppl. 3, 287-288 (2003)
Kamiya N., and Shen J. R.: “Crystal structure of oxygen-evolving potosystem II from
Thermosynechococcus valcanus at 3.7Å resolution” Proc. Natl Acad. Sci. USA 100, 98-103 (2003)
BL41XU/BL45XU
Adachi S., Park S.-Y., Tame J. R. H., Shiro Y., and Shibayama N.: “Direct observation ofphotolysis-induced tertiary structural changes in hemoglobin” Proc. Natl Acad. Sci. USA 100, 7039-7044(2003)
Handa N., Terada T., Kamewari Y., Hamana H., Tame J. R. H., Park S.-Y., Kinoshita K., Ota M.,
Nakamura H., Kuramitsu S., Shirouzu M., and Yokoyama S.: “Crystal structure of the conserved protein
TT1542 from Thermus thermophilus HB8” Protein Sci. 12, 1621-1632 (2003)
BL44B2
Seto A., Shirouzu M., Terada T., Murayama K., Kuramitsu S., and Yokoyama S.: “Crystal structure of ahypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7Å resolution” Proteins 53, 768-771(2003)
BL44B2
Fukai S., Nureki O., Sekine S, Shimada A., Vassylyev D., Yokoyama S.: “Mechanism of molecularinteractions for tRNAVal recognition by valyl-tRNA synthetase” RNA 9, 100-111 (2003)
BL44B2

Mizuno N., Voordouw G., Miki K., Sarai A., and Higuchi Y.: “Crystal structure of dissimilatory sulfite
reductase D (DsrD) protein - Possible interaction with B- and Z-DNA by its winged-helix motif”
Structure 11, 1133-1140 (2003)
BL41XU/BL44B2
Nakagawa A., Miyazaki N., Taka J., Naito H., Ogawa A., Fujimoto Z., Mizuno H., Higashi T., WatanabeY., Omura T., Cheng H. R., and Tsukihara T.:“The atomic structure of Rice dwarf virus reveals theself-assembly mechanism of component proteins” Structure 11, 1227-1238 (2003)