Eidoram et Nordkap, hactenus lectarum, indicata simul distributione geographica. Sectio posterior. – Uppsaliae: Typograph. Academici, 259–572 p.

Frisvad JC. 2015 – Fungal Chemotaxonomy. In: Zeilinger, S., Martín, JF., García-Estrada, C. (eds) Biosynthesis and Molecular Genetics of Fungal Secondary Metabolites, Fungal Biology. Springer, New York, NY.

Frisvad JC, Andersen B, Thrane U. 2008 – The use of secondary metabolite profiling in chemotaxonomy of filamentous fungi. Mycological Research 112(2), 231–240.

Fuckel L. 1860 – Enumeratio Fungorum Nassoviae a Leopoldo Fuckel collectorum. Series 1. Jahrbücher des Nassauischen Vereins für Naturkunde. Jahrg. 15. Pp. 1–123.

Fujisawa T, Barraclough TG. 2013 – Delimiting species using single-locus data and the generalized mixed yule coalescent approach: a revised method and evaluation on simulated data sets. Systematic Biology 62(5), 707–724.

Fujita MK, Leaché AD, Burbrink FT, McGuire JA et al. 2012 – Coalescent-based species delimitation in an integrative taxonomy. Trends in Ecology and Evolution 27(9), 480–488.

Gannibal PhB. 2022 – Polyphasic approach to fungal taxonomy. Biology Bulletin Reviews 12(1), 18–28.

García-Cunchillos I, Zamora JC, Ryberg M, Lado C. 2022 – Phylogeny and evolution of morphological structures in a highly diverse lineage of fruiting-body-forming amoebae, order *Trichiales* (*Myxomycetes*, *Amoebozoa*). Molecular Phylogenetics and Evolution 177, 107609.

García-Martín JM, Zamora JC, Lado C. 2023 – Multigene phylogeny of the order *Physarales* (*Myxomycetes*, *Amoebozoa*): shedding light on the dark-spored clade. Persoonia 51, 89–124.

Ge ZW, Brenneman T, Bonito G, Smith ME. 2017 – Soil pH and mineral nutrients strongly influence truffles and other ectomycorrhizal fungi associated with commercial pecans (*Carya illinoinensis*). Plant and Soil 418: 493–505.

Gillet CC. 1879–1887 – Champignons de France. Les discomycètes. [Livraison 1]. – Alençon: E. de Broise, 230 p.

Gkoutselis G, Rohrbach S, Harjes J, Obst M et al. 2021 – Microplastics accumulate fungal pathogens in terrestrial ecosystems. Scientific Reports 11, 13214.

Grossart HP, Van den Wyngaert S, Kagami M, Wurzbacher C et al. 2019 – Fungi in aquatic ecosystems. Nature Reviews Microbiology 17(6), 339–354.

Groenewald M, Hittinger CT, Bensch K, Opulente DA et al. 2023 – A genome-informed higher rank classification of the biotechnologically important fungal subphylum *Saccharomycotina*. Studies in Mycology 105, 1–22.

Gryganskyi AP, Golan J, Dolatabadi S, Mondo S et al. 2018 – Phylogenetic and phylogenomic definition of *Rhizopus* species. G3: Genes Genom Genet 8(6), 2007–2018.

Gui H, Purahong W, Wubet T, Peršoh D et al. 2020 – *Funneliformis mosseae* alters soil fungal community dynamics and composition during litter decomposition. Fungal Ecology 43, 100864.

Guo Y, Jud W, Weikl F, Ghirardo A et al. 2021 – Volatile organic compound patterns predict fungal trophic mode and lifestyle. Communications Biology 4, 673.

Guterres DC, Galvão-Elias S, de Souza BCP, Pinho DB et al. 2018 – Taxonomy, phylogeny, and divergence time estimation for *Apiosphaeria guaranitica*, a Neotropical parasite on bignoniaceous hosts. Mycologia 110(3), 526–545.

Haelewaters D, Pfliegler WP, Gorczak M, Pfister DH. 2019 – Birth of an order: comprehensive molecular phylogenetic study reveals that *Herpomyces* (*Fungi*, *Laboulbeniomycetes*) is not part of *Laboulbeniales*. Molecular Phylogenetics and Evolution 133, 286–301.

Haelewaters D, Van Caenegem W, De Kesel A. 2022 – *Hesperomyces harmoniae*, a new name for a common ectoparasitic fungus on the invasive alien ladybird *Harmonia axyridis*. Sydowia 75, 53–74.

Han SL, Wang MM, Ma ZY, Raza M et al. 2023 – *Fusarium* diversity associated with diseased cereals in China, with an updated phylogenomic assessment of the genus. Studies in Mycology 104(1), 87–148.
Haridas S, Albert R, Binder M, Bloem J et al. 2020 – 101 *Dothideomycetes* genomes: a test case for predicting lifestyles and emergence of pathogens. *Studies in Mycology* 96(1), 141–153.

Harman KL, Humphrey GK, Goodale MA. 1999 – Active manual control of object views facilitates visual recognition. *Current Biology* 9(22), 1315–1318.

Hawksworth DL, Crous PW, Redhead SA, Reynolds DR et al. 2011 – The Amsterdam declaration on fungal nomenclature. *IMA Fungus* 2, 105–111.

Hawksworth DL, Lücking R. 2017 – Fungal diversity revisited: 2.2 to 3.8 million species. *Microbiology Spectrum* 5(4), FUNK-0052-2016.

Hawksworth DL, Hibbett DS, Kirk PM, Lücking R. 2018 – (F-005-006) Proposals to permit DNA sequence data to be used as types of names of fungi. *IMA Fungus* 9, V–VI.

He MQ, Zhao RL, Hyde KD, Begerow D et al. 2019 – Notes, outline and divergence times of *Basidiomycota*. *Fungal Diversity* 99, 105–367.

He MQ, Zhao RL, Liu DM, Denchev TT et al. 2022a – Species diversity of *Basidiomycota*. *Fungal Diversity* 114, 281–325.

He MQ, Zhu XY, Li TH, Cui BK et al. 2022b – Macrofungal classification system and information platform http://www.nmdc.cn/macrofungi/ is launched. *Mycosystema* 41(6), 899–905

Hibbett D, Abarenkov K, Köljalg U, Öpik M et al. 2017 – Sequence-based classification and identification of *Fungi*. *Mycologia* 108(6), 1049–1068.

Hibbett DS, Binder M, Bischoff JF, Blackwell M et al. 2007 – A higher-level phylogenetic classification of the *Fungi*. *Mycological Research* 111(5), 509–547.

Hibbett DS, Ohman A, Glotzer D, Nuhn M et al. 2011 – Progress in molecular and morphological taxon discovery in *Fungi* and options for formal classification of environmental sequences. *Fungal Biology Reviews* 25(1), 38–47.

Hofstetter V, Buyck B, Eyssartier G, Schnee S et al. 2019 – The unbearable lightness of sequenced-based identification. *Fungal Diversity* 96(1), 243–284.

Hongsanan S, Jeewon R, Purahong W, Xie N et al. 2018 – Can we use environmental DNA as holotypes? *Fungal Diversity* 92, 1–30.

Huanraluek N, Padaruth OD, Jayawardena RS, Li WJ et al. 2021 – https://www.coelomycetes.org: Databank that contributes for the classification, identification and nomenclature of coelomycetes. *Asian Journal of Mycology* 4(2), 114–122.

Hyde KD. 2022 – The numbers of fungi. *Fungal Diversity* 114, 1

Hyde KD, Cai L, McKenzie EHC, Yang YL et al. 2009 – *Colletotrichum*: a catalogue of confusion. *Fungal Diversity* 39, 1–17.

Hyde KD, Abd-Elsalam K, Cai L. 2010 – Morphology: still essential in a molecular world. *Mycotaxon* 114, 439–451.

Hyde KD, McKenzie EH, KoKo TW. 2011 – Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2010. *Mycosphere* 2(1),1–88.

Hyde KD, Maharachchikumbura SSN, Hongsanan S, Samarakoon MC et al. 2017 – The ranking of fungi: a tribute to David L. Hawksworth on his 70th birthday. *Fungal Diversity* 84, 1–23.

Hyde KD, Jeewon R, Chen YJ, Bhunjun CS et al. 2020a – The numbers of fungi: is the descriptive curve flattening? *Fungal Diversity* 103, 219–271.

Hyde KD, Norphanphoun C, Maharachchikumbura SSN, Bhat DJ et al. 2020b – Refined families of *Sordariomycetes*. *Mycosphere* 11(1), 305–1059.

Hyde KD, de Silva N, Jeewon R, Bhat DJ et al. 2020c – AJOM new records and collections of fungi: 1–100. *Asian Journal of Mycology* 3(1), 22–294.

Index Fungorum. 2023 – https://www.indexfungorum.org/Names/Names.asp

James TY, Stajich JE, Hittinger CT, Rokas A. 2020 – Toward a fully resolved fungal tree of life. *Annual Review of Microbiology* 74, 291–313.

Jayasiri SC, Hyde KD, Ariyawansa HA, Bhat J et al. 2015 – The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. *Fungal Diversity* 74(1), 3–18.
Jayawardena RS, McKenzie EHC, Chen YJ, Phillips AJL et al. 2019 – https://onestopshopfungi.org/, a database to enhance identification of phytopathogenic genera. Asian Journal of Mycology 2(1), 281–286.

Jayawardena RS, Bhunjun CS, Hyde KD, Gentekaki E et al. 2021a – *Colletotrichum*: lifestyles, biology, morpho-species, species complexes and accepted species. Mycosphere 12, 519–669.

Jayawardena RS, Hyde KD, de Farias ARG, Bhunjun CS et al. 2021b – What is a species in fungal plant pathogens? Fungal Diversity 109, 239–266.

Jeewon R, Liew ECY, Hyde KD. 2004 – Phylogenetic evaluation of species nomenclature of *Pestalotiopsis* in relation to host association. Fungal Diversity 17, 39–55.

Jeewon R, Yeung QSY, Wannasinghe DN, Ramapadarath S et al. 2018 – Hidden mycota of pine needles: molecular signatures from PCR-DGGE and ribosomal DNA phylogenetic characterization of novel phylotypes. Scientific Reports 8, 18053.

Johnston PR, Quijada L, Smith CA, Baral H-O et al. 2019 – A multigene phylogeny toward a new phylogenetic classification for the *Leotiomycetes*. IMA Fungus 10, 1.

Jones EB, Pang KL, Abdel-Wahab MA, Scholz B et al. 2019 – An online resource for marine fungi. Fungal Diversity 96, 347–433.

Karsten PA. 1871–1879 – Mycologia Fennica Helsingfors, Finska Litteratur-sllskapets Tryckeri Series: Bidrag till kannedom av Finlands natur och folk h. 19.

Keller NP. 2019 – Fungal secondary metabolism: regulation, function and drug discovery. Nature Reviews Microbiology 17, 167–180.

Kendrick WB. 1989 – Subdivision Deuteromycotina a fungal chimera. Sydowia 41, 6–14.

Kidd SE, Abdolrasouli A, Hagen F. 2023 – Fungal nomenclature: managing change is the name of the game. Open forum infectious diseases 10, ofac559.

Kim D, Gilchrist CL, Chun J, Steinegger M. 2023 – UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi. Nucleic Acids Research, 51(D1), D777–D784.

Kirk PM, Cannon PF, Minter DW, Stalpers JA. 2008 – Ainsworth & Bisby’s Dictionary of the Fungi, 10th edn. CABI, Wallingford.

Kock JLF, Botha A. 1998 – Fatty acids in fungal taxonomy. In: Frisvad JC, Bridge PD, Arora DK (eds), Chemical Fungal Taxonomy Marcel Dekker, New York, pp. 219–246.

Kuhnert E, Sir EB, Lambert C, Hyde KD et al. 2017 – Phylogenetic and chemotaxonomic resolution of the genus *Annulohypoxylon* (*Xylariaceae*) including four new species. Fungal Diversity 85, 1–43.

Kurtzman CP, Fell JW, Boekhout T. 2011 – The Yeasts, a Taxonomic Study 5th edition.

Læssøe T, Srikitikulchai P, Fournier J, Köpcke B, Stadler M. 2010 – Lepraric acid derivatives as chemotaxonomic markers in *Hypoxylon aeruginosum*, *Chlorostroma subcubisporum* and *C. cyaninum*, sp. nov. Fungal Biology 114, 481–489.

Lado C. 2005–2023 – An online nomenclatural information system of *Eumycetozoa*. Real Jardín Botánico, CSIC. Madrid, Spain. https://eumycetozoa.com

Lado C, Eliasson U. 2022 – Taxonomy and systematics: current knowledge and approaches on the taxonomic treatment of *Myxomycetes*: updated version. In: Rojas C, Stephenson SL. (eds.) *Myxomycetes: Biology, Systematics, Biogeography and Ecology*, 2021. pp. 269–324.

Lambert C, Wendt L, Hladki A, Stadler M, Sir EB. 2019 – *Hypomontagnella (Hypoxylaceae)*: a new genus segregated from *Hypoxylon* by a polyphasic taxonomic approach. Mycological Progress 18, 187–201.

Laurence MH, Summerell BA, Burgess LW, Liew ECY. 2014 – Genealogical concordance phylogenetic species recognition in the *Fusarium oxysporum* species complex. Fungal Biology 118, 374–384.

Leontyev DV, Schnittler M. 2022 – The phylogeny and phylogenetically based classification of myxomycetes. In: Myxomycetes: Biology, Systematics, Biogeography and Ecology, 2021, pp. 97–124.
Leontyev DV, Schnittler M, Ishchenko Y, Quade A et al. 2022 – Another species complex in myxomycetes: diversity of peridial structures in *Lycogala epidendrum*. Nova Hedwigia 114(3-4), 413–434.

Leontyev DV, Buttgereit M, Kochergina A, Shchepin ON, Schnittler M. 2023a – Two independent genetic markers support separation of the myxomycete *Lycogala epidendrum* into numerous biological species. Mycologia 115(1), 32–43.

Leontyev DV, Ishchenko Y, Schnittler M. 2023b – Fifteen new species from the genus *Lycogala* (*Myxomycetes*). Mycologia 115 (4), 524–560.

Li Q, Huang J, Li Y, Zhang Y et al. 2017 – Fungal community succession and major components change during manufacturing process of Fu brick tea. Scientific Reports 7(1), 1–9.

Li Y, Steenwyk JL, Chang Y, Wang Y et al. 2021 – A genome-scale phylogeny of the kingdom Fungi. Current Biology 31, 1653–1665.

Liimatainen K, Kim JT, Pokorny L, Kirk PM et al. 2022 – Taming the beast: a revised classification of *Cortinariaceae* based on genomic data. Fungal Diversity 112, 89–170.

Link HF. 1833 – Handbuch zur Erkennung der nutzbarsten und am häufigsten vorkommenden Gewächse. Theil 3. – Berlin: in der Haude und Spenerschen Buchhandlung (S. J. Joseepy), 536 s.

Liu F, Hou L, Raza M, Cai L. 2017a – *Pestalotiopsis* and allied genera from *Camellia*, with description of 11 new species from China. Scientific Reports 7(1), 1–19.

Liu JK, Hyde KD, Jeewon R, Phillips AJ et al. 2017 – Ranking higher taxa using divergence times: a case study in *Dothideomycetes*. Fungal Diversity 84, 75–99.

Lumbsch HT, Huhndorf SM. 2007 – Notes on ascomycete systematics. Nos. 4408 – 4750. Myconet 13, 59 – 99.

Magain N, Miadlikowska J, Mueller O, Gajdeczka M et al. 2017 – Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: a case study using the lichen-forming genus *Peltigera* section *Polydactylon*. Molecular Phylogenetics and Evolution 117, 10–29.

Maharachchikumbura SSN, Hyde KD, Groenewald JZ, Xu J, Crous PW. 2014 – *Pestalotiopsis* revisited. Studies in Mycology 79, 121–186.

Maharachchikumbura SSN, Chen Y, Ariyawansa HA, Hyde KD et al. 2021 – Integrative approaches for species delimitation in *Ascomycota*. Fungal Diversity 109, 155–179.

Maharachchikumbura SSN, Wanasinghe DN, Elgorban AM, Al-Rejaie SS et al. 2022 – *Brunneosporopsis yunnanensis* gen. et sp. nov. and *Allocryptovalsa xishuangbanica* sp. nov., new terrestrial *Sordariomycetes* from Southwest China. Life 12, 635.

Manamgoda DS, Rossman AY, Castlebury LA, Crous PW et al. 2014 – The genus *Bipolaris*. Studies in Mycology 79, 221–288.

Mapook A, Boonmee S, Liu JK, Jones EBG et al. 2016 – Taxonomic and phylogenetic placement of *Phaeodimeriella* (*Pseudoperisporiaceae*, *Pleosporales*). Cryptogamie, Mycologie 37, 157–176.

Marin-Felix Y, Miller AN, Cano-Lira JF, Guarro J et al. 2020 – Re-evaluation of the Order *Sordariales*: delimitation of *Lasiosphaeriaceae* s. str., and introduction of the New families *Diplogelasinosporaceae*, *Naviculisporaceae*, and *Schizotheciaceae*. Microorganisms 8, 1430.

Matute DR, Sepúlveda VE. 2019 – Fungal species boundaries in the genomics era. Fungal Genetics and Biology 131, 103249.

May TW. 2017 – Report of the Nomenclature Committee for Fungi – 20. Taxon 66, 483–495.

May TW, Redhead SA, Bensch K et al. 2019 – Chapter F of the International Code of Nomenclature for algae, fungi, and plants as approved by the 11th International Mycological Congress, San Juan, Puerto Rico, July 2018. IMA Fungus 10, 21.

McCarthy CG, Fitzpatrick DA. 2017 – Phylogenomic reconstruction of the oomycete phylogeny derived from 37 genomes. Mycosphere 2, e00095–e117.
McNeill J, Barrie FR. Buck WR, Demoulin V et al. 2011 – International Code of Nomenclature for algae, fungi, and plants (Melbourne Code) adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011. Koeltz Scientific Books.

Montoliu-Nerin M, Sánchez-García M, Bergin C, Kutschera VE et al. 2021 – In-depth phylogenomic analysis of arbuscular mycorrhizal fungi based on a comprehensive set of de novo genome assemblies. Frontiers in Fungal Biology 2, 716385.

Moore RT. 1971 – Recent Advances in Microbiology, 1–623.

Mueller GM, Cunha KM, May TW, Allen JL et al. 2022 – What do the first 597 global fungal red list assessments tell us about the threat status of fungi? Diversity 14(9), 736.

MycoBank. 2023 – https://www.mycoBank.org/

Naranjo-Ortiz MA, Gabaldón T. 2019 – Fungal evolution: major ecological adaptations and evolutionary transitions. Biological Reviews 94, 1443–1476.

Nees von Esenbeck CGD. 1817 – Das System der Pilze und Schwämme. Ein Versuch von Dr. C.G. Nees von Esenbeck. Würzburg: Stahelschen Buchhandlung, 334 s.

Nguyen HDT, Sultana T, Kesanakurti P, Hambleton S. 2019 – Genome sequencing and comparison of five *Tilletia* species to identify candidate genes for the detection of regulated species infecting wheat. IMA Fungus 10, 1–7.

Niego AGT, Rapior S, Thongklang N, Raspé O et al. 2023a – Reviewing the contributions of macrofungi to forest ecosystem processes and services. Fungal Biology Reviews 44:100294.

Niego AGT, Lambert C, Mortimer P, Thongklang N et al. 2023b – The contribution of fungi to the global economy. Fungal Diversity 121, 95–137.

Nilsson RH, Larsson KH, Taylor AFS, Bengtsson-Palme J et al. 2019 – The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research 47(D1), D259–D264.

Nilsson RH, Ryberg M, Wurzbacher C, Tedersoo L et al. 2023 – How, not if, is the question mycologists should be asking about DNA-based typification. MycoKeys 96: 143–157.

Nobrega MA, Pennacchio LA. 2004 – Comparative genomic analysis as a tool for biological discovery. The Journal of Physiology 554, 31–39.

Nozaki H, Iseki M, Hasegawa M, Misawa K et al. 2007 – Phylogeny of primary photosynthetic eukaryotes as deduced from slowly evolving nuclear genes. Molecular Biology and Evolution 24, 1592–1595.

O’Brien HE, Parrent JL, Jackson JA, Moncalvo JM, Vilgalys R. 2005 – Fungal community analysis by large-scale sequencing of environmental samples. Applied and Environmental Microbiology 71, 5544–5550.

Opathy C, Gabaldón T. 2019 – Recent trends in molecular diagnostics of yeast infections: from PCR to NGS. FEMS Microbiol Reviews 43(5), 517–547.

Osono T. 2017 – Leaf litter decomposition of 12 tree species in a subtropical forest in Japan. Ecological Research 32, 413–422.

Parnmen S, Rangsiruji A, Mongkolsuk P, Boonpragob K et al. 2012 – Using phylogenetic and coalescent methods to understand the species diversity in the *Cladia aggregata* complex (*Ascomycota*, *Lecanorales*). PLoS One 7, e52245.

Patouillard NT. 1887 – Les Hyménomycètes d'Europe. Anatomie générale et classification des champignons supérieurs. Matériaux pour l'Histoire des Champignons I. P. Klinksieck, Paris, France.

Pem D, Hongsanan S, Doilom M, Tibpromma S et al. 2019 – https://www. dothideomycetes. org: an online taxonomic resource for the classification, identification, and nomenclature of *Dothideomycetes*. Asian Journal of Mycology 2(1), 287–297.

Pereira-Carvalho RC, Dianese JC, Sepulveda-Chavera G, Armando EAS. 2009 – An overlooked source of fungal diversity: novel hyphomycete genera on trichomes of Cerrado plants. Mycological Research 113, 261–274.
Pérez-Ortega S, Garrido-Benavent I, Grube M, Olmo R et al. 2016 – Hidden diversity of marine borderline lichens and a new order of fungi: *Collemopsidiales (Dothideomyceta)*. Fungal Diversity 80, 285–300.

Persoon CH. 1794 – Neuer Versuch einer systematischen Eintheilung der Schwämme // Neues Magazin für die Botanik. H. 1. – S. 63–80.

Persoon CH. 1801 – Synopsis methodica fungorum. Sistens enumerationem omnium huc usque detectarum specierum, cum brevibus descriptionibus nec non. Pars secunda. – Gottingae: Henricum Dieterich, 241–706 p.

Persoon CH. 1822–1828 – Mycologia europea seu completa omnium fungorum in variis europaeae regionibus detectorium enumeratio, methodo naturali disposita; descriptione succincta, synonymia selecta et observationibus criticus additis. Sectio prima [-tertia]. – Erlangae: Joann Jacob Palm.

Persoon CH. 1828 – Elenchus fungorum, sistens commentarium in Sistema mycologicum. vol. 1–2 Gryphiswaldiae: Sumptibus Ernesti Mauritii 1828.

Philippe H, Lopez P, Brinkmann H, Budin K et al. 2000 – Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions. Proceedings of the Royal Society B: Biological Sciences 267, 1213–1221.

Phillips WA. 1887 – Manual of the British *Discomycetes* with descriptions of all the species of fungi hitherto found in Britain, included in the family and illustrations of the genera. – London: Kegan Paul, Trench et Co., 462 p.

Phukhamsakda C, Hongsanan S, Ryberg M, Ariyawansa HA et al. 2016 – The evolution of *Massarineae* with *Longipedicellataceae* fam. nov. Mycosphere 7, 1713–1731.

Phukhamsakda C, McKenzie EHC, Phillips AJL, Jones EBG et al. 2020 – Microfungi associated with *Clematis* (*Ranunculaceae*) with an integrated approach to delimiting species boundaries. Fungal Diversity 102, 1–203.

Phukhamsakda C, Nilsson RH, Bhunjun CS, Gomes de Farias AR et al. 2022 – The numbers of fungi; contributions from traditional taxonomic studies and challenges of metabarcoding. Fungal Diversity 114, 327–386.

Pietsch KA, Eichenberg D, Nadrowski K, Bauhus J et al. 2019 – Wood decomposition is more strongly controlled by temperature than by tree species and decomposer diversity in highly species rich subtropical forests. Oikos, 128(5), 701–715.

Pizarro D, Divakar PK, Grewe F Leavitt SD et al. 2018 – Phylogenomic analysis of 2556 single-copy protein-coding genes resolves most evolutionary relationships for the major clades in the most diverse group of lichen-forming fungi. Fungal Diversity 92, 31–41.

Põlme S, Abarenkov K, Henrik Nilsson R et al. 2020 – FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles. Fungal Diversity 105, 1–16.

Porter TM, Schadt CW, Rizvi L Martin AP et al. 2008 – Widespread occurrence and phylogenetic placement of a soil clone group add a prominent new branch to the fungal tree of life. Molecular Phylogenetics and Evolution 46, 635–644.

Posch AE, Spadiut O, Herwig C. 2012 – A novel method for fast and statistically verified morphological characterization of filamentous fungi. Fungal Genetics and Biology, 49(7), 499–510.

Prakash PY, Irinyi L, Halliday C, Chen S et al. 2017 – Online databases for taxonomy and identification of pathogenic fungi and proposal for a cloud-based dynamic data network platform. Journal of Clinical Microbiology 55(4), 1011–1024.

Puchkov E. 2016 – Image analysis in microbiology: A review. Journal of Computer and Communications 4(15), 8.

Purahong W, Tanunchai B, Muszynski S, Maurer F et al. 2022 – Cross-kingdom interactions and functional patterns of active microbiota matter in governing deadwood decay. Proceedings of the Royal Society B, 289, 20220130.

Quélet L. 1886 – Enchiridion fungorum in Europa media et præsertim in Gallia vigentium. – Lutetiæ: Octavii Doin, 352 p.
Raja HA, Miller AN, Pearce CJ, Oberlies NH. 2017 – Fungal identification using molecular tools: a primer for the natural products research community. Journal of Natural Products 80, 756–770.

Rédou V, Vallet M, Meslet-Cladière L, Kuma A et al. 2016 – Marine fungi. The Marine Microbiome: an Untapped Source of Biodiversity and Biotechnological Potential, 99–153.

Regier JC, Shultz JW, Ganley ARD, Hussey A et al. 2008 – Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Systematic Biology 57, 920–938.

Reich M, Labes A. 2017 – How to boost marine fungal research: a first step towards a multidisciplinary approach by combining molecular fungal ecology and natural products chemistry. Marine Genomics 36, 57–75.

Rinkel J, Babczyk A, Wang T, Stadler M, Dickschat JS. 2018 – Volatiles from the hypoxylaceous fungi *Hypoxylon griseobrunneum* and *Hypoxylon macrocarpum*. Beilstein Journal of Organic Chemistry 14, 2974–2990.

Robert V, Vu D, Amor ABH, de Wiele NV et al. 2013 – MycoBank gearing up for new horizons. IMA Fungus 4, 371–379.

Ronikier A, Janik P, de Haan M, Kuhnt A, Zankowicz M. 2022 – Importance of type specimen study for understanding genus boundaries – taxonomical clarifications in *Lepidoderma* based on integrative taxonomy approach leading to resurrection of the old genus *Polyschismium*. Mycologia 114, 1008–1031.

Ryberg M, Nilsson RH. 2018 – New light on names and naming of dark taxa. MycoKeys 23, 31–39.

Saag L, Saag A, Randlane T. 2009 – World survey of the genus *Lepraria* (*Stereocaulaceae*, lichenized *Ascomycota*). Lichenologist 41, 25–60.

Saccardo PA. 1904 – De Diagnostica et nomenclatura mycologica, Admonita quaedam. Annales Mycologici 2, 195–198. [English translation by Clements FE (1904) J Mycol 10, 109–112.

Saccardo PA, Sydow P. 1899 – Supplementum Universale, Pars IV. Sylloge Fungorum 14, 1–1316.

Samarakoon MC, Hyde KD, Promputtha I, Hongsanan S et al. 2016 – Evolution of *Xylariomycetidae* (*Ascomycota: Sordariomycetes*). Mycosphere 7, 1746–1761.

Samarakoon MC, Hyde KD, Maharachchikumbura SSN, Stadler M et al. 2022 – Taxonomy, phylogeny, molecular dating and ancestral state reconstruction of *Xylariomycetidae* (*Sordariomycetes*). Fungal Diversity 112, 1–88.

Sánchez-Ramírez S, Tulloss RE, Guzmán-Dávalos L, Cifuentes-Blanco J et al. 2015 – In and out of refugia: historical patterns of diversity and demography in the North American Caesar’s mushroom species complex. Molecular Ecology 24, 5938–5956.

Schoch CL, Seifert KA, Huhndorf S, Robert V et al. 2012 – Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi. Proceedings of the National Academy of Sciences 109, 6241–6246.

Senanayake IC, Jeewon R, Chomnunti P, Wanasinghe DW et al. 2018 – Taxonomic circumscription of *Diaporthales* based on multigene phylogeny and morphology. Fungal Diversity 93, 241–443.

Senanayake IC, Pem D, Rathnayaka AR, Wijesinghe SN et al. 2022 – Predicting global numbers of teleomorphic ascomycetes. Fungal Diversity 114(1), 237–278.

Shen XX, Zhou XF, Kominek J, Kurtzman CP et al. 2016 – Reconstructing the backbone of the *Saccharomycotina* yeast phylogeny using genome-scale data. G3 6: 3927–3939.

Shen XX, Opulente DA, Kominek J, Zhou X et al. 2018 – Tempo and mode of genome evolution in the budding yeast subphylum. Cell 175(6), 1533–1545.

Shen XX, Steenwyk JL, LaBella AL, Opulente DA et al. 2020 – Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum *Ascomycota*. Science Advances 6, 45.

Simões MF, Pereira L, Santos C, Lima N. 2013 – Polyphasic identification and preservation of fungal diversity: concepts and applications. Management of microbial resources in the environment, Springer, 91–117.
Sobel JM, Chen GF, Watt LR, Schemske DW. 2010 – The biology of speciation. Evolution 64, 295–315.

Spatafora JW, Chang Y, Benny GL, Lazarus K et al. 2016 – A phylum-level phylogenetic classification of Zygomycete fungi based on genome-scale data. Mycologia 108, 1028–1046.

Spring O, Haas K. 2002 – The fatty acid composition of *Plasmopara halstedii* and its taxonomic significance. European Journal of Plant Pathology 108, 263–267.

Spring O, Haas K, Lamla I, Thurnhofer S, Vetter W. 2005 – The composition and taxonomic significance of fatty acid patterns in three white rust species: *Albugo amaranthi*, *A. candida* and *A. tragopogonis* (*Peronosporales*, *Albuginaceae*). Mycological Progress 4, 179–184.

Stadler M, Tichy HV, Katsiou E, Hellwig V. 2003 – Chemotaxonomy of *Pochonia* and other conidial fungi with verticillium-like anamorphs. Mycological Progress 2, 95–122.

Stadler M, Hawksworth DL, Fournier J. 2014 – The application of the name *Xylaria hypoxylon*, based on *Clavaria hypoxylon* of Linnaeus. IMA Fungus 5, 57–66.

Steele PR, Pires JC. 2011 – Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification. American Journal of Botany 98, 415–425.

Steenwyk JL, Shen XX, Lind AL, Goldman GH et al. 2019 – A robust phylogenomic time tree for biotechnologically and medically important fungi in the genera *Aspergillus* and *Penicillium*. MBio 10, 1–25.

Strassert JFH, Wurzbacher C, Hervé V, Antany T et al. 2021 – Long rDNA amplicon sequencing of insect-infecting nephridiophagids reveals their affiliation to the *Chytridiomycota* and a potential to switch between hosts. Scientific Reports 11, 396.

Strassert JFH, Monaghan MT. 2022 – Phylogenomic insights into the early diversification of fungi. Current Biology 32, 3628–3635.e3

Stukenbrock E, Gurr S. 2023 – Address the growing urgency of fungal disease in crops. Nature, 617(7959), 31–34.

Su W, Xu R, Bhunjun CS, Tian S et al. 2022 – Diversity of *Ascomycota* in Jilin: introducing novel woody litter taxa in *Cucurbitariaceae*. Journal of Fungi 8, 905.

Sun J, Yu S, Lu Y, Liu H et al. 2022 – Proposal of a new family *Pseudodiploösporeaceae* fam. nov. (*Hypocreales*) based on phylogeny of *Diploöspora longispora* and *Paecilomyces penicillatus*. Mycology 14, 60–73.

Sun S, Coelho MA, Heitman J, Nowrousian M. 2019 – Convergent evolution of linked mating-type loci in basidiomycete fungi. PLOS Genetics 15(9), e1008365.

Surup F, Kuhnert E, Lehmann E, Heitkämper S et al. 2014 – Sporothriolide derivatives as chemotaxonomic markers for *Hypoxylon monticulosum*. Mycology 5, 110–119.

Sutton BC. 1980 – The *Coelomycetes* (CAB, IMI) Kew, Surrey, U.K. pp. 696.

Taylor JW, Jacobson DJ, Kroken S, Kasuga T et al. 2000 – Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31, 21–32.

Tedersoo L, Sánchez-Ramírez S, Kõljalg U, Bahram M et al. 2018 – High-level classification of the fungi and a tool for evolutionary ecological analyses. Fungal Diversity 90, 135–159.

Thiyagaraja V, Lücking R, Ertz D, Wanasinghe DN et al. 2020 – Evolution of non-lichenized, saprotrophic species of *Arthonia* (*Ascomycota*, *Arthoniales*) and resurrection of *Naevia*, with notes on *Mycoporum*. Fungal Diversity 102, 205–224.

Truong C, Mujic AB, Healy R, Kuhar F et al. 2017 – How to know the fungi: combining field inventories and DNA-barcoding to document fungal diversity. New Phytologist 214, 913–919.

Tsui CKM, Baschien C, Goh TK. 2016 – Biology and ecology of freshwater fungi. Biology of Microfungi 285-313.

Turland NJ, Wiersema JH, Barrie FR, Greuter W et al. 2018 – International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum Vegetabile 159. Glashütten: Koeltz Botanical Books.

Ullah S, Rahman W, Ullah F, Jehan R et al. 2022 – FDBC: a comprehensive platform of the fungi databases collection. Journal of Biology 11(3), 001–006.
Van Caenegem W, Blondelle A, Dumolein I, Santamaria B et al. 2023 – Five new species of *Gloeandromyces* (*Fungi*, *Laboulbeniales*) from tropical American bat flies (*Diptera*, *Streblidae*), revealed by morphology and phylogenetic reconstruction. *Mycologia* 115(5), 714–737.

Vicente MF, Basilio A, Cabello A, Pelaez F. 2003 – Microbial natural products as a source of antifungals. Clinical Microbiology and Infection 9, 15–32.

Voglmayr H, Friebes G, Gardiennet A, Jaklitsch WM. 2018 – *Barrmaelia* and *Entosordaria* in *Barrmaeliaceae* (fam. nov., *Xylariales*) and critical notes on *Anthostomella*-like genera based on multigene phylogenies. *Mycological Progress* 17, 155–177.

Walker GM, White NA. 2017 – Introduction to fungal physiology. *Fungi: Biology and Applications*, 1–35.

Weete JD, Gandhi SR. 1999 – Sterols and fatty acids of the *Mortierellaceae*: taxonomic implications. *Mycologia* 91, 642–649.

Wei DP, Gentekaki E, Hyde KD, Xiao YP et al. 2022 – https://invertebratefungi.org: an expert-curated web-based platform for the identification and classification of invertebrate-associated fungi and fungus-like organisms. Database, article ID baac021.

Whiston E, Taylor JW. 2016 – Comparative phylogenomics of pathogenic and nonpathogenic species. *G3 Genes, Genomes, Genetics* 6, 235–244.

White TJ, Bruns T, Lee SJ, Taylor J. 1990 – Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 18(1), 315–322.

Wibberg D, Stadler M, Lambert C, Bunk B et al. 2021 – High quality genome sequences of thirteen *Hypoxylaceae* (*Ascomycota*) strengthen the phylogenetic family backbone and enable the discovery of new taxa. *Fungal Diversity* 106, 7–28.

Wijayawardene DN, McKenzie EH, Hyde KD. 2012 – Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2011. *Mycosphere* 3(2), 157–228.

Wijayawardene NN, Hyde KD, Tibpromma S, Wanasinghe DN et al. 2017 – Towards incorporating asexual fungi in a natural classification: checklist and notes 2012–2016. *Mycosphere* 8, 1457–1555.

Wijayawardene NN, Hyde KD, Al-Ani LK, Tedersoo L et al. 2020a – Outline of *Fungi* and fungus-like taxa. *Mycosphere* 11, 1060–1456

Wijayawardene NN, Hyde KD, Dai DQ, Tang LZ et al. 2020b – A dynamic portal for a community-driven, continuously updated classification of *Fungi* and fungus-like organisms: *outlineoffungi.org*. *Mycosphere* 11, 1514–1526.

Wijayawardene NN, Hyde KD, Anand G, Dissanayake LS et al. 2021 – Towards incorporating asexually reproducing fungi in the natural classification and notes for pleomorphic genera. *Mycosphere* 12, 238–405.

Wijayawardene NN, Hyde KD, Dai DQ, Sánchez-García M et al. 2022a – Outline of *Fungi* and fungus-like taxa – 2021. *Mycosphere* 13, 53–453.

Wijayawardene NN, Phillips AJL, Pereira DS, Dai DQ et al. 2022b – Forecasting the number of species of asexually reproducing fungi (*Ascomycota* and *Basidiomycota*). *Fungal Diversity* 114, 463–490.

Wołczańska A, Christie WW, Fuchs B, Galuska CE et al. 2021– Fatty acid composition and lipid profiles as chemotaxonomic markers of phytopathogenic fungi *Puccinia malvacearum* and *P. glechomatis*. *Fungal Biology* 125, 869–878.

Wu B, Hussain M, Zhang W, Stadler M et al. 2019 – Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi. *Mycology* 10(3), 127–140.

Wu NA, Dissanayake AJ, Manawasinghe IS, Rathnayaka AR et al. 2021 – https://botryosphaeriales.org/, an online platform for up-to-date classification and account of taxa of *Botryosphaeriales*. Database, article ID baab061.
Wurzbacher C, Larsson E, Bengtsson-Palme J, Van den Wyngaert S et al. 2019 – Introducing ribosomal tandem repeat barcoding for fungi. Molecular Ecology Resources 19(1), 118–127.

Xu J. 2016 – Fungal DNA barcoding. Genome 59, 913–932.

Xu J. 2020 – Fungal species concepts in the genomics era. Genome 63, 459–468.

Zamora JC, Svensson M, Kirschner R, Olariaga I et al. 2018 – Considerations and consequences of allowing DNA sequence data as types of fungal taxa. IMA Fungus 9(1), 167–175.

Zanne AE, Abarenkov K, Afkhami ME, Aguilar-Trigueros CA et al. 2020 – Fungal functional ecology: bringing a trait-based approach to plant-associated fungi. Biological Reviews 95(2), 409–433.

Zhang N, Li Y, Wubet T, Bruelheide H et al. 2018a – Tree species richness and fungi in freshly fallen leaf litter: unique patterns of fungal species composition and their implications for enzymatic decomposition. Soil Biology and Biochemistry 127, 120–126.

Zhang ZF, Zhao P, Cai L. 2018b – Origin of cave fungi. Frontiers in Microbiology 9, 1407.

Zhao P, Liu F, Li YM, Cai L. 2016b – Inferring phylogeny and speciation of *Gymnosporangium* species and their coevolution with host plants. Scientific Reports 6(1), 29339.

Zhao RL, Zhou JL, Chen J, Margaritescu S et al. 2016a – Towards standardizing taxonomic ranks using divergence times – a case study with reconstruction of *Agaricus* taxonomic system. Fungal Diversity 78, 239–292.

Zhao RL, Li GJ, Sánchez-Ramírez S, Stata M et al. 2017 – A six-genes phylogenetic overview of *Basidiomycota* and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective. Fungal Diversity 84, 43–74.

Zhou LW, May TW. 2022 – Fungal taxonomy: current status and research agendas for the interdisciplinary and globalisation era. Mycology 14, 52–59.

Zhou LW. 2023 – Microbial taxonomy with DNA sequence data as nomenclatural type: How far should we go? The Innovation Life 1, 100017.