### 3.3. DNA Damage Repair in Response to Ionizing Radiation

The biological consequences of IR are highly influenced by the activation of the DNA damage response mechanisms [195]. A high DDR capacity after IR has been described for CSCs in different tumor entities, including GBM and NSCLC [18,157,196]. Among the various types of DNA damages produced directly and indirectly by IR, such as single-strand breaks (SSBs), double-strand breaks (DSBs), and damaged nucleotide bases or abasic sites, DSBs represent the principal lesions that might lead to cell death or loss of reproductive capacity via activation of different pathways, such as mitotic catastrophe, apoptosis or senescence, if not adequately corrected [197–200]. It has been reported that about 1000 SSBs and 40 DSBs are produced per Gy/cell [201]. Two major mechanisms of DSBs repair have been extensively studied: error-prone non-homologous end joining (NHEJ) and error-free homology-directed recombination (HR) [202,203]. DSBs have been reported to activate three key phosphatidylinositol 3-kinase-related kinase (PIKK) family kinases: ataxia telangiectasia mutated kinase (ATM), ATM-related kinase (ATR), and DNA-dependent protein kinase (DNA-PK) [204,205]. NHEJ is initiated by the binding of the Ku70/Ku80 heterodimer to the end of the DSB [206], allowing the recruitment of catalytic subunit DNA-PKcs forming the protein complex DNA-PK [206]. DNA-bound DNA-PK is activated and phosphorylates numerous proteins, including histone H2AX (γ-H2AX) [207], Artemis [208], X-ray repair cross-complementing 4 (XRCC4), ligase IV complex [209], and XRCC4-like factor [210] that are aggregated on the site of IR-induced foci (IRIF) [211,212]. Inversely, HR uses undamaged homologous chromosome or sister chromatid as a template [213]. Consequently, this mechanism only functions in late S/G2 cell cycle phases [202] and requires the presence of breast cancer proteins [202]. NHEJ has been known to be an efficient and rapid process due to the avid end-binding ability of Ku and its high abundance [214], whereas HR is the least error-prone repair mechanism [202].

### 3.4. Cancer Stem Cells in Glioblastoma

It has been reported that a single GBM can contain heterogeneous clones of GBM stem-like cells (referred to as GSCs) with different morphologies, self-renewal, aggressive phenotype, and proliferative capacities [49,215–219]. The similarity of the gene-expression profiles of GSCs and normal neural stem cells (NSCs) provides support to the idea that CSCs are malignant variants of normal neural stem cells [220,221]. It has been shown that GSCs are able to grow under serum-free culture conditions identical to normal neural stem cells [222], efflux fluorescent dyes [223], and generate progeny comprised of a mixture of stem cells and more restricted non-stem cells descendants through symmetrically dividing [1,49,224]. GSCs tend to be more tumorigenic, pro-angiogenic, and radioresistant than the majority of GBM cells [10,131,225]. Recent accumulating evidence has revealed that GSCs can enhance radioresistance in GBM through activation of DNA damage checkpoint proteins, including checkpoint kinase 1 (Chk1), checkpoint kinase 2 (Chk2), ATM, structural maintenance of chromosomes (SMC1), and p53 [226]. GSCs have been reported to express cell surface CSCs markers, such as stage-specific mouse embryonic antigen, CD34, CD44, α6-integrin, CD133, L1CAM (L1 Cell Adhesion Molecule), CD54, and A2B5 [97,217,227–235]; cytoskeleton proteins (also referred as; intermediate filaments or nanofilaments), such as glial fibrillary acidic protein (GFAP) [236], vimentin [237–239], and Nestin; transcription factors, such as SOX2, Nanog, Oct3/4 [240,241], nuclear factor erythroid 2-related factor 2 (Nrf2) [241,242], oligodendrocyte transcription factor (Olig2) [243], FoxM1 [244], and zinc finger protein 281 (ZNF281) [245], POU class 3 Homeobox 2 [246], and melanocyte inducing transcription factor (MITF) [247]; posttranscriptional factors, such as Musashi 1 [248] and microRNAs [249]; polycomb (Pc) transcriptional suppressors, such as enhancer of zeste homolog 2 and BMI 1 [248]; transcriptional co-activators, such as YAP/TAZ [171] and TRRAP [250], yet no single marker is able to define a general GSC population. It has been reported that GSCs metabolism undergoes different changes than that of traditional GBM tumor cells following IR [251]. Gene expression analyses of GBM cells treated by IR have revealed that many genes are modulated after treatment [252–254]. These genes
are closely involved in a variety of cellular processes, such as cell cycle, apoptosis, DNA
replication/damage repair, cytoskeleton organization, and metabolism [255]. There is a
growing body of evidence that the fraction of GSCs expressing CD133 increases after IR [80].
CD133+ GSCs have been reported to represent the cellular subpopulation that confers ra-
diosensitivity and drives GBM recurrence [225,229,256]. It has been observed that injection
of 10² CD133+ cells forms a tumor that regenerates a phenocopy of the patient's original
tumor upon transplantation, whereas transplantation of 10⁴ CD133- cells does not lead
to producing a tumor [225,229]. CD133+ GSCs radioresistance is attributed to preferential
activation of the DNA damage checkpoint proteins (e.g., Chk1 and Chk2 kinases) [225,257].
It has been found that the CD133+ subpopulation is able to repair IR-induced DNA damage
more efficiently and undergo less apoptosis compared to CD133- counterparts [225,258].
The CD133+ fraction among highly aggressive GBMs ranges from 0.1 to 50% [229]. It
should be emphasized that some GBM tumors do not contain any CD133+ cells [259–261].
For example, GBM xenografts irradiated in vivo have been reported to be enriched 3–5-fold
for CD133+ cells compared to untreated xenografts [225]. Bao et al. observed using a
colony-forming unit assay that CD133– non-GSCs cultures irradiated at a dose of 5 Gy
form fewer colonies compared to CD133+ GSC cultures [225]. Overexpression of Olig2 and
CD44 after exposure to 6 Gy of cobalt-60 has been found to be related to the proliferative
and invasive state of GBM [262]. Many authors have pointed out the role of α6-integrin
in GBM radioresistance by increasing the efficiency of DDR [263]. IR-treated GBM cells
have been reported to produce sICAM-1, resulting in a mesenchymal shift of GBM only
in vivo [235,264]. Side population cells have been identified in GBM cells [168]. In 2003,
Trog et al. first reported on the upregulation of the ABC-1 transporter in human GBM in
response to DNA-damaging agents in an IR-dose-dependent manner. They also found
that IR has a higher inducible effect on the ABC-1 expression rates depending on GBM cell
density [265]. A high expression of KLF4 has been shown to promote the proliferation of
the GSC population and the regrowth of GBM, even after aggressive radiotherapy [266]. An
increased expression of Nrf2 post-IR has been reported to protect GBM against IR-induced
oxidative stress by activating several downstream genes related to detoxification and an-
tioxidant response, such as glutathione peroxidase and superoxide dismutase [241,267–271].
It has been documented that a pronounced enrichment of BMI1 after IR at the chromatin
confers radioresistance in GBM through copurifying with NHEJ repair proteins, such as
DNA-PK, poly [ADP-ribose] polymerase 1 (PARP-1), hnRNP U, and histone H1 in CD133+
GSCs [272]. Epidermal growth factor receptor (EGFR) and epidermal growth factor receptor
variant III (EGFRvIII) have been shown to mediate radioresistance in GBM by maintaining
EMT and activating both NHEJ and HR [273,274]. IR-induced VEGF secretion enhances the
angiogenic potential of GBM [275]. Compelling preclinical proof has shown that anti-VEGF
growth therapy stimulates IR-induced cell death in U-87 under normoxic and hypoxic
conditions [276]. Maachani U. B. et al. demonstrated that both FOXM1 and STAT3 proteins
interact together and co-localize in the nucleus under radiotherapy, facilitating the DDR
processes [277]. It has been shown that GBM become more radioresistant through the over-
expression of proliferating cell nuclear antigen (PCNA)-associated factor, which facilitates
DNA damage bypass [278]. Accumulating evidence has pointed out the potential role of
antioxidant enzymes, such as superoxide dismutase, catalase, glutathione peroxidase, glu-
tathione reductase, in GBM radioresistance [279]. These enzymes have been reported to be
activated up to 5-fold in a radioresistant variant clone isolated from a human U251 cell line
compared to the parent cells after IR [279,280]. Enhanced expression of cyclooxygenase-2,
also known as prostaglandin endoperoxide/H synthase 2, in GSCs has been reported to be
potently involved in progressive GBM growth, as well as radioresistance [281,282]. It has
been evinced that overexpression of cathepsin L, a lysosomal endopeptidase enzyme, en-
hances GSCs' radioresistance through inducing expression of CD133 and phosphorylation
of DNA damage checkpoint proteins [283]. Cyclin-dependent kinase 2 (CDK2) expression
has been shown to be significantly enriched in GBM and is functionally required for their
proliferation and growth both in vitro and in vivo [284]. CDK2 has also been to induce
radioresistance in GBM cells, and its knockdown enhances cell apoptosis when combined with radiotherapy [284]. Histone deacetylase 4 and -6 have been shown to induce radioresistance in GBM by maintaining the GSC phenotype [285]. Many studies have reported that the radiosensitivity of GBM can be altered by targeting microRNAs. The expression of miR-1, miR-221/222, and miR-124 has been shown to effectively regulate IR-related signal transduction pathways in GBM [286]. Another study has revealed that miR-1, miR-125a, miR-150, and miR-425 induce radioresistance in GBM through upregulation of the cell cycle checkpoint response [287]. Many reports have stated that high Ki-67 is rigorously proportional to the high proliferative state of GBM cells [288,289]. It has been shown that the Ki-67 labeling index is significantly expressed in post-irradiated GBM cells compared to their respective pre-irradiated counterparts [290]. GSCs isolated from human LN18 cells with cell surface vimentin overexpression have been found to present 95% CD133 expression and 98% CD44 expression, suggesting that GSCs that express surface vimentin possess tumor-initiating properties [291]. Many studies have shown that vimentin regulates IR-induced migration of GBM cells [292]. Survivin has been reported to enhance GBM cell survival, regulate DSB repair capabilities, and contribute to a hypermetabolic state upon IR exposure [9,293]. Increased GFAP and insulin-like growth factor binding protein-2 (IGFBP-2) serum levels in GBM patients after radiotherapy have been shown to be correlated with the malignant degree and prognosis of GBM (wpr-669323). It has been indicated that overexpression of RCC2, a regulator of chromosome condensation 2, enhances proliferation and tumorigenesis, as well as confers radioresistance in GBM cells [294]. Alterations in several molecular and signaling pathways following IR have been shown to be closely involved in inducing radioresistance in GBM [295]. GSC functions are largely mediated by several deregulated signaling pathways, such as MEK/ERK [296], Notch [297], NF-κB [298], Hh [299], WNT/β-catenin [300], PI3K/AKT/mTOR [301], JAK-STAT [302,303], retinoblastoma protein (Rb), receptor tyrosine kinase (RTK) [304], transforming growth factor-β (TGF-β), platelet-derived growth factor [305,306], and PTEN [307], resulting in an aberrant expression of downstream signature molecules that drive radioresistance and recurrence of GBM. Marampon et al. showed that MEK/ERK pathway positively regulates HIF-1α protein activity through the sustained expression of DNA-PKcs, preserving GBM radioresistance in hypoxic conditions [296]. CD133 has been shown to promote the tumorigenic capacity of GCS by activation of the PI3K/Akt pathway by interacting with the p85 regulatory domain of PI3K [308]. It has been shown that Notch1 inhibition in GBM xenografts reduces the hypoxic fraction and delays tumor progression, suggesting a potential mechanism whereby Notch1 downregulation radiosensitizes GBM cells [309]. NF-κB signaling pathway has been found to be aberrantly activated in response to IR in GBM, where its IR-induced upregulation has been involved in GSC maintenance, invasion, mesenchymal identity promotion, and DNA damage repair through NHEJ and HR processes [49,310–316]. In GBM, the most common genetic lesions, including p53, PTEN, and P16 (also known as p16INK4A, cyclin-dependent kinase inhibitor 2A), have been reported to regulate the DNA damage response [10]. Around 40–50% of GBM has p53 mutations [317,318]. Indeed, it has been reported that the failure of p53 to induce p21<sup>BAX</sup> expression causes radioresistance in GBM [319]. Moreover, loss of PTEN contributes to an increase in the cellular motility of neural precursor cells, alteration in Chk1 localization, and genetic instability, conferring radioresistance in GBM cells [320,321]. It has been established that the radiosensitivity of GSCs can be increased by inhibiting Becline-1 and ATG5, autophagy-related proteins, indicating that the induction of autophagy contributes to radioresistance in GSC [322]. The PI3K/Akt/mTOR pathway has been suggested to play an important role in IR-induced autophagy in GBM cells [323].

### 3.5. *Cancer Stem Cells in Non-Small-Cell Lung Cancer*

It has been demonstrated that IR-Surviving NSCLC cells display CSCs [324]. The expression of CSC-related markers after radiotherapy is significantly correlated with a poor prognosis in patients with NSCLC [325]. There is a huge number of lung CSC
(LCSC) markers, including cell surface markers, such as EpCAM [326], CD 24 [327,328], CD34 [329], CD44, CD90 [57,330], CD133 [94], CD166 [83], ALDH1 [331,332], sICAM-1 [333], ABCG2 [334], and NCAM [335]; stemness related-TFs, such as Yamanaka factors (Oct-3/4) [336], SOX-2 [337], KLF4 [338], c-Myc [339], Stabilin 2 [340], MITF [341], STAT3 [342], and HIF-1α [343]; other stemness-related markers, such as miRNAs [344], Nestin [345], BMI1 [346], Musashi-1 [347], PARP-1 [348], matrix metalloproteinases (MMPs) [349,350], VEGF, epidermal Growth Factor (EGF) [351], and chemokines (e.g., CXCL12/CXCR-4) [352]. CD24 expression in NSCLC cells has been reported to be associated with disease progression and aggressive tumor behavior [327,353]. It has been observed that CD24 is upregulated only in IR-surviving NSCLC cells [324]. It has been reported that CD44 is dramatically upregulated in IR-surviving NSCLC cells [324]. Knockdown of CD44 expression in NSCLC cells has been shown to suppress cell proliferation and colony formation in vitro [354]. Tirino et al. proposed that CD133+ cells isolated from NSCLC cells can form tumors and act as CICs [355,356]. The injection of 10⁴ lung cancer CD133+ cells in immunocompromised mice has been reported to readily generate unlimited progeny phenotypically identical to the original tumor [94]. It has been observed that A549 but not H1299 cells expand their CD133+ population after exposure to 4 Gy IR, and isolated A549 CD133+ cells have been found to be radioresistant, and this resistance has been noted to correspond with upregulated expression of DSB repair genes in A549 cells [157]. Clinically relevant IR doses (1 or 3 Gy) have been reported to induce markedly HIF-1α expression in a subset of normoxic NSCLC lines in vitro, leading to modulating the cell viability and angiogenic activity [357] through the activation of anaerobic metabolism [358]. CXCR-4 has been found to use STAT3-mediated slug expression to maintain NSCLC radioresistance [359]. Many articles have proved that angiogenic factors, such as VEGF and EGF, are correlated with tumor growth, aggressiveness, survival, disease relapse, and radioresistance in NSCLC [360]. Some studies have focused on the clinical implications of miRNAs for radiotherapy in patients with NSCLC. miRNA-210 has been found to drive radioresistance in NSCLC via promoting HIF1α-induced glycolysis [361] and regulating IR-induced DSBs repair [362]. Furthermore, miRNA-25 has been known to lessen radiosensitivity by binding the B-cell translocation gene 2 in NSCLC cells [363], whereas miRNA-1323 has been reported to decrease radiosensitivity of NSCLC by inducing the expression of protein kinase, DNA-activated, catalytic polypeptide [364]. The reduced expression of tumor protein p53-inducible protein 3, a downstream mediator of the DDR, in IR-surviving H460R cells has been shown to be greatly involved in acquired RR [365]. MMPs has found to play an undeniable role in tumor extracellular matrix (ECM) invasion [366]. It has been demonstrated that IR-surviving NSCLC cells, after exposure to 10 Gy of, show increased motility and increased expression of MMP-2/-9 [367]. It has been suggested that the detaching soluble natural killer group 2 member D ligands in NCI-H23 cells can be a result of IR-induced MMP-2 [368]. Using a 3D NSCLC model, IR with a dose of 5 Gy has been found to increase the growth of tumor tissue analogs containing CSCs and enhance the expression of cytokines (regulated upon activation, normal T cell expressed, and secreted, epithelial-neutrophil activating peptide, and TGF-α) and factors (MMP, vimentin, and tissue inhibitors of metalloproteinase (TIMP)) [369]. It has been indicated that the level of IR-induced apoptosis decreases in those NSCLC cells exhibiting BCL-2 overexpression [370]. Our previous experimental data have reported that ABCG2 expression markedly increases in multifractionated radiotherapy-surviving NSCLC cells at a total dose of 60 Gy, conferring these cells a radioresistant phenotype [170]. Silencing MITF has been reported to promote migration, invasion, colony formation, metastasis, and tumorigenesis in CL1-0, CL1-1, and CL1-5 cell lines [341]. Overexpression of SOX2 in IR-surviving NSCLC cells has been revealed to stimulate cellular migration and anchorage-independent growth, while SOX-2 knockdown has been reported to impair their growth [324,371,372]. It has been demonstrated that inhibition of Poly (ADP-ribose) polymerase-1 (PARP-1), a well-known active candidate in DNA repair, separately diminishes proliferation, migration, EMT, phosphorylation of EGFR, Akt, p38, NF-kB, and ERK in treated NSCLC with ¹²C [373,374]. Several signaling pathways,
such as PI3K, MEK [375], Notch [376], Nrf2 [377], WNT/β-catenin [378], and Hh [379], have been described to regulate the behavior of LCSCs and contribute to radioresistance in NSCLC. It has been reported that PI3K kinase inhibition can play a role in boosting the radiosensitivity of NSCLC cells via immune evasion [380] and resistance to IR-induced apoptosis [381]. Overwhelming data have indicated that the dysregulated expression of the Notch signaling pathway is a frequent event in NSCLC [382,383]. It has been shown that high Notch pathway activity has an unequivocal role in survival, poor prognosis, and radioresistance in NSCLC patients through the inhibition of apoptosis, suggesting its potential as a therapeutic target [384,385]. Moreover, Notch-1 has been reported to increase NSCLC cells' survival under hypoxic conditions by activating the insulin-like growth factor (IGF) pathway [386]. Additionally, inhibiting IR-induced Notch-1 signaling has been found to enhance the radiotherapy efficacy in H1299 and H460 cell lines [376]. It has been reported that Nrf2 expression is significantly elevated in NSCLC cells at 4 h after IR exposure [387], as well as it has been observed to regulate the cellular antioxidant system and crosstalk with Notch1 signaling pathway in response to IR [387]. It was reviewed by Heavey et al. that inhibition of the Akt/mTOR/4EBP/eIF4E pathway in NSCLC cells might result in the development of radiotherapy and overcome radioresistance [388]. The Sonic Hh-Gli pathway has been found to promote the migrative and invasive abilities of NSCLC cells by regulating EMT [389]. The aberrant activation of the WNT/β-catenin signaling in NSCLC has been reported to correlate closely with self-renewal, proliferation, tumorigenesis, progression, and radioresistance [182,390]. Increased PI3K/AKT/mTOR activation has been shown to lead to radioresistance in NSCLC cells [301]. Previously, we have reported that residual γH2AX/53BP1 foci number decreases in multifractionated radiotherapy surviving NSCLC cells compared to parental cells post-IR at extra single doses of 2, 4, and 6 Gy. Furthermore, our previous data have detected that Rad51 protein expression might play a key role in enhancing DNA DSB repair by the HR pathway in multifractionated radiotherapy survival of p53 null NSCLC cells [391].

## 4. Epithelial-to-Mesenchymal Transition and Migratory Activity in Glioblastoma and Non-Small-Cell Lung Cancer

The heterogeneity of tumor cell populations allows for the movements of either individual cells or clusters of cells. EMT, a reversible molecular and cellular process, has been invoked as a mechanism by which immotile tumor cells can acquire a migratory, invasive, and motile phenotype by attenuating adherens junction and avoiding anoikis in the TME [392,393]. The reverse process is termed mesenchymal-to-epithelial transition (MET) [394]. MET and EMT have been closely linked to the acquisition of stemness characteristics in tumorigenesis [28,30,50,395-397]. Tumor cells undergoing EMT have been observed to lose their apical basal cell polarity and acquire a more spindle-shaped form [398], facilitating their dissemination into the blood circulation [28]. Moreover, EMT allows tumor cells to degrade basal extracellular matrix by MMPs activation to help these transformed cells to migrate [399,400]. A partial EMT observed among tumor cells can be explicated by the different tumorigenic capabilities of tumor cells from various niches inside tumor. Tumor cells with a partial EMT have been found to be more efficient in tumor budding, invasion, and metastasis because these processes evidently require both EMT and MET [401]. Loss of expression of tight junction proteins, including E-cadherin, and upregulation of mesenchymal markers, such as N-cadherin, Vimentin, and Fibronectin, have been considered as the key molecular events of EMT [402]. EMT-inducing TFs, such as basic helix-loop-helix (bHLH) factors (e.g., E2A, an inhibitor of DNA binding (Id2, Id3), and Twist 1/2), Snail family members (e.g., Snail and Slug), finger E-box-binding homeobox factor (ZEB) family members (e.g., ZEB1/2, SMAD interacting protein-1 (SIP1)) [403,404], Goosecoid [405], ZNF281 [406], Brachyury, sine oculis homeobox homolog 1 (SIX1), transcription factor 4, FOXC2, paired related homeobox 1 [407], and others, have been demonstrated to enhance the expression of genes associated with the mesenchymal state, such as N-cadherin, Vimentin, Fibronectin, β-integrins, and ECM-cleaving proteases [407] and directly
repress mediators of epithelial adhesion proteins, such as E-Cadherin, Occludins, Claudins, Desmosomes, and cytokeratins [274,403,404,408,409]. Several EMT-related signaling pathways have been identified, including signaling pathways mediated by TGF-β [410,411], bone morphogenetic proteins, WNT-β-catenin, Notch, Hh, RTKs [402], SMADs, STATs, PI3K/Akt, MAPKs [412,413], JAK/STAT3 [414], NFkB [415], Src, and Ras [407,416]. It has been reported that radiotherapy induces tumor cells to undergo EMT, resulting in marked radioresistance [417–419]. Moreover, EMT can be induced by TME stresses (e.g., hypoxia) [420,421]. EMT has been shown to confer tumor cells’ resistance to apoptotic stimuli [50]. EMT has known to be a motor of cellular plasticity [422] since it is accompanied by immunosuppressive TME [400,423,424], tumor-initiation potential [425], cell proliferation [426,427], and cellular senescence [428]. Furthermore, EMT has been shown to be associated with catabolic reprogramming for tumor cell survival during metabolic stress [429]. A high infiltrative nature and an increased migratory potential of GBM and NSCLC have been shown to be tightly associated with relapse [430,431]. EMT has been pointed out as one of the mechanisms that confer invasive and metastatic property to GBM and NSCLC after exposure to IR [432,433]. The most important adhesion and cell-cell contact factors, E-cadherin and β-catenin [434,435], have been found to be rarely expressed in GBM cells [50]. Sublethal doses of IR have been reported to induce cell migration and invasiveness of GBM [436]. Furthermore, multifractionated radiotherapy has been found to enhance the migratory capability of GBM cells in vivo [437]. STAT3/NF-κB and Slug signaling activation has been reported to enhance IR-induced tumor migration, invasion, and EMT properties in GBM via the upregulation of ICAM-1 [438]. NSCLC cells have been found to possess a spindle or rounded morphology and express high levels of EMT markers after prolonged exposure to IR [439]. It has been demonstrated that IR can increase EMT phenotype in NSCLC cells by regulating EMT markers via activating the JAK2 tyrosine kinase phosphorylates PAK1 (JAK2-PAK1)-Snail signaling pathway [440]. IR-surviving A549 and H460 cells at a dose of 5 Gy have been reported to express significantly higher levels of EMT markers (Snail1, Vimentin, and N-cadherin) compared to non-irradiated NSCLC cells [324]. Furthermore, it has been observed that the expression of Oct-4, SOX2, and β-catenin proteins markedly increases in adherent H460 cells maintained in a monolayer after IR at a dose of 5 Gy [324]. Our previous data have suggested that a fraction dose escalation regimen at a total dose of 60 Gy probably causes partial (or hybrid) EMT program activation in multifractionated radiotherapy surviving NSCLC cells through either Vimentin upregulation in p53null or an aberrant N-cadherin upregulation in p53wt cells [441]. Moreover, we have indicated previously that the hypofractionation regimen IR does not significantly influence horizontal 1D cell migration of multifractionated radiotherapy surviving NSCLC cells, though promoting their migration by 24 h after scratching [441].

**5. Radiation-Induced Dormancy**

Tumor niches, including metastatic, perivascular, and bone marrow cells, have been found to harbor dormant tumor cells [23]. Cellular dormancy can be reached in one of two ways: either each tumor cell arrests its cell cycling or the entire neoplasm exhibits balanced growth/apoptosis rates, but too often discussed in terms of two growth arrest mechanisms: **cellular quiescence** (G0), in which cells are in a non-proliferative/slow-cycling state with a reversible growth arrest [442,443], and **cellular senescence**, in which cell cycle arrest is largely irreversible [444–448]. Therefore, mechanisms of tumor relapse induced by the reactivation of dormant tumor cells depend on whether the cells became dormant via quiescence or senescence [449]. Many cues have been known to induce cellular dormancy, such as endoplasmic reticulum stress [450], angiogenic switching, immunological surveillance, anoikis, autophagy, senescence [23], TME (e.g., extracellular matrix, inflammatory signals, genetic, and epigenetics alterations) [445], and IR [24]. In tumor cells, including CSCs, dormancy has been shown to be critical for adaptation and protection against environmental stress and toxicity [451], leading to a tumor relapse [23]. However, several lines of evidence
have reported that CSCs can contain heterogeneous subpopulations that either include rapid-cycling or quiescent subpopulations [452].

### 5.1. Quiescence-Associated Radioresistance

Quiescence is defined as a sleep-like state in which cells cease to divide but retain their ability to re-enter a novel cell cycle readily and rapidly [453,454]. It has been reported that tumor cells switch between phases of growth and quiescence to gain the genetic and epigenetic modifications that are imperative for survival [451]. Cellular radiosensitivity shows a heterogeneous pattern through different cell cycle phases [455,456]. Quiescent cancer cells also referred to as slow-proliferating/slow-cycling cancer cells, are considered an attractive therapeutic target for tumor treatment since they are significantly resistant to conventional radiotherapy with a higher repair capacity than cycling cells [443,457–459]. It has been confirmed that Ki-67 is degraded constantly in G0/G1 and accumulates in S/M phases [460]. Moreover, Ki-67 levels during G0/G1 have been found to indicate how long a cell has spent in these phases [460]. It has been shown that the more protracted a cell has spent in quiescence, the lower the Ki-67 level will be upon re-entering the cell cycle [460]. Furthermore, quiescent cancer cells have been known to display a low rate of BrdU incorporation [461] and a low ERK 1/2: p38 MAPK ratio [462]. The entrance into the quiescence state allows tumor cells to hamper stress and toxic stimuli. After repairing the cellular damage, the cells may re-enter the cell cycle upon stimulation by specific growth factors, such as E2F and CDK2 [463]. It has been shown that, after IR, GSCs are more quiescent than GBM cells that express elevated levels of glycolysis and oxidative phosphorylation, the so-called “Warburg effect”, whereas GSCs show metabolic signs of quiescence, such as a diminished non-essential amino-acid synthesis, and unchanged levels of glycolytic and oxidative metabolites [251]. Earlier studies have demonstrated that Ras-related C3 botulinum toxin substrate 2 induces aberrant proliferation of quiescent NSCLC after IR exposure to a single dose of 2 Gy via promoting JUN-B expression through megakaryoblastic leukemia 1—serum response factor (MAL-SRF) pathway [464].

### 5.2. Radiation-Induced Senescence

Therapy-induced senescence (TIS), a prolonged state of cell-cycle arrest, is reported in tumor cells treated by various therapeutic agents, including IR [465]. Senescent cells have been reported to contribute to the composition of pre-malignant [466–468] and malignant lesions [469]; thus, they play an indubitable role in tumor cell fate [470,471]. Cellular senescence can be triggered by short or dysfunctional telomeres, known as replicative senescence, but also prematurely, by a variety of stress signals [472]. Interestingly, IR prematurely promotes the same phenotypes as replicative senescence prior to the Hayflick limit. This process is known as stress-induced premature senescence (SIPS) [473]. Unlike in apoptosis, cells that enter senescence are not killed; they retain some metabolic activities and secretory activity despite not undergoing cell division [474]. TIS state is accompanied by induced lysosomal biogenesis [475], macromolecular [476,477] and transcriptomic alterations [478], often leading to the synthesis and secretion of a wide spectrum of mediators, a phenomenon termed the senescence-associated secretory phenotype (SASP) [479–482]. SASP-related biomarkers include: 1- soluble factors, such as growth factors (e.g., amphiregulin, epiregulin, heregulin, EGF, basic fibroblast growth factor (bFGF), FGF7, hepatocyte growth factor, VEGF, angiogenin, stem cell factor, stromal cell-derived factor-1, placental growth factor, nerve growth factor, IGFBP-2, -3, -4, -6, -7), cytokines (e.g., IL-6, IL-7, IL-1a, -1b, IL-13, IL-15), chemokines (e.g., IL-8, CXCL1, -b, -gc, monocyte chemoattractant protein 2 (MCP-2, MCP-4, MIP-1a, MIP-3a), hepatocellular carcinoma-4, Eotaxin, Eotaxin-3, epithelial neutrophil activating peptide, I-309, interferon-inducible T cell alpha chemoattractant), other inflammatory factors (e.g., interferon -γ, CXCL13, glycosylation-inhibiting factor), proteases and regulators (e.g., MMP-1, -3, -10, -12, -13, -14, TIMP-1, TIMP-2, serpin E1) [482], receptors shedding or ligands (e.g., ICAM-1, -3, osteoprotegerin, soluble tumor necrosis factor receptor I, CD263, CD120, CD95, urokinase plasminogen activator surface receptor,
soluble gp130, EGF-R), nonprotein soluble factors (e.g., prostaglandin E2, nitric oxide, ROS); 2- insoluble factors (ECM) (Fibronectin, Collagens, Laminin) [482]. Upon secretion from senescent cells, these SASP factors usually act in a paracrine manner to stimulate the proliferation and/or transformation of adjacent immortalized cancer cells or even can trigger the senescence of other cells in the TME [483]. This SASP induces an EMT and invasiveness, hallmarks of malignancy, by a paracrine mechanism that depends largely on the SASP factors IL-6 and IL-8 [484]. Senescent cells have been reported to show morphological alterations, such as an enlarged, flattened, and irregular shape with increased cytoplasmic granularity bearing more vacuoles, an increase in senescence-associated -galactosidase (SA-Gal) activity, altered mitochondria in terms of both morphology (e.g., increased mass [485]) and function [486], the expression of the pH-restricted (pH 6) [487–489], and an altered chromatin organization known as senescence-associated heterochromatin foci (SAHF) [490] contributing to the silencing of proliferation-promoting genes, including E2F target genes, such as cyclin A [491]. Senescence-associated cell enlargement is ascribed to several mechanisms, and one of them is cellular hypertrophy, in which a cell gets bigger due to an accumulation of proteins [492]. Senescent cells also lose monolayer integrity, which may result from the downregulation of intercellular junctions [493,494]. Unfortunately, TIS is reversible state for only some subsets of the senescent cell population, leading to cellular re-proliferation and, ultimately, tumor progression [444,495,496]. For example, several studies on various tumor types, including GBM and NSCLC, have shown that therapy-induced senescent cells can re-enter the cell cycle to trigger relapse [465,497–499]. It has been demonstrated that, after IR, senescent non-CSCs secrete chemokines contributing to the maintenance and migration of CSCs [499]. It has been noted that the long-term G2 arrest and subsequent senescence by G2-slippage are more preponderate at a high dose of IR than at a moderate dose [500,501]. TIS has a profound influence on the radiotherapeutic outcome, particularly in multifractionated regimens where the IR dose is increased incrementally. Because every single dose of IR will convert some tumor cells into senescent cells, thus treatment may not contribute to the anticipated antitumor effect by the time a patient receives the highest doses of IR. An emerging body of evidence has also confirmed that “irreversible” senescence can be overcome following radiotherapy. Of note, tumor suppressor proteins, such as PTEN, p53, or hypo-phosphorylated Rb, can be used to detect cellular senescence. Even the absence of markers can be used, including the absence of Ki-67 or the lack of bromodeoxyuridine (BrdU) incorporation [483]. It has been reported that the conditional expression of p53, p16<sup>INK4A</sup>, or p21<sup>waf1/cip1</sup> alone in neoplastic cell lines results in irreversible growth arrest and senescence phenotype [502]. It is worth emphasizing that at present, the list of reliable markers reflecting the causes and features of cellular senescence in vitro and in vivo goes far beyond SA-β-Gal expression, including high expression levels of the CDK inhibitor, p16<sup>INK4A</sup>, p21<sup>cip1</sup> [503], SASP [484,504], Lipofuscin [505], Lamin B1 downregulation [488], γ-H2A.X, as well as SAHF [473]. The radiation-induced senescent cancer cells express SASP that is required for triggering the proliferation, invasion, and migration of surrounding cells in vitro [484,506]. Tumor cells can undergo senescence following radiotherapy in vitro and in vivo [507]. Further investigations have revealed that the increase in SASP-expressing senescent GBM cells is likely one of the main reasons for GBM recurrence post-radiotherapy [482,508]. It has been observed that <sup>137</sup>Cs γ-ray IR at single acute doses (0, 2, 5, 10, and 20 Gy) renders 17–20% of U87MG and LN229 cells dead but gives rise to 60–80% of growth-arrested GBM cells with elevation of senescence markers, such as SA-β-Gal+ cells, H3K9me3+ cells, and p53-p21<sup>cip1</sup> + cells. Furthermore, it has been reported that 24 h after IR with a total dose of 20 Gy, expression of SIPS factors, such as IL6, IL8, IL1α, IL1β, chemokine (C-C motif) ligand 2 (CCL2), CXCL1, SASP mRNAs, and p21<sup>cip1</sup>, increases significantly in irradiated U87MG and LN229 cells compared to non-irradiated counterpart cells. It has been suggested that IR likely triggers SASP induction in GBM cells via activation of NFκB signaling [508]. Upon treatment by IR, the primary response of GBM cells has been reported to be proliferation arrest. The arrested GBM cells then undergo premature senescence within 4–8 days following IR as alternative
responses to apoptosis [509]. It has been demonstrated that PARP-1 activity in GBM during radiotherapy is required for residual GBM cells to escape from TIS [498]. IR has been shown to induce primarily premature senescence rather than apoptosis in human NSCLC in a dose-dependent manner [510]. The antitumor effect of IR doses (0–6 Gy) has been reported to correlate well with IR-induced premature senescence, as evidenced by increased SA-β-Gal staining, decreased BrdU incorporation, and elevated expression of p16INK4A in irradiated NSCLC [510]. Previous studies have shown that IR-induced senescence in NSCLC cells is associated with p53 and p21 expression [471,511]. It has been demonstrated that IR induces the expression of phosphorylated p53 and p21 in a dose-dependent manner in H460 cells [510]. It has been reported that escape from TIS in both a p53 null NSCLC in vitro and in primary tumors is due to overexpression of CDK1 [512] and survivin [513] and that aberrant expression of CDK1 promotes the formation of polyploid senescent cells, which are an important intermediary through which escape preferentially occurs [495]. It has been demonstrated that the concurrent radiotherapy with the blockade of DNA-PK and PARP-1 enhances the senescence of irradiated H460 cells in vitro and in vivo further than that accomplished with IR alone [514].

## 6. Polyploid Giant Cancer Cells/Multinucleated Giant Cancer Cells in Glioblastoma and Non-Small-Cell Lung Cancer

Aneuploidy is a ubiquitous characteristic of tumors. Over 90% of human solid tumors are aneuploid [515]. A large amount of data has been provided irrefutable evidence that IR can activate cell cycle checkpoints that inhibit entrance into or progression through mitosis [516,517]. The frequency of polyploid giant cancer cells (PGCCs) and multinucleated giant cancer cells (MNGCs) have been reported to be positively correlated with high tumor recurrence, malignancy grade [518,519], poor prognosis, and resistance to tumor therapy [520–525]. PGCCs/MNGCs have been shown to contribute to solid tumor heterogeneity [526] and to be an integral part of the tumor cell life cycle [526]. PGCCs/MNGCs are not dormant as formerly thought [13,526,527]. It has been revealed that tumor cells can escape cell death following IR by endopolyploidization [41], as well as PGCCs/MNGCs have been observed to be more radioresistant than their diploid counterparts [528,529]. Polyploid tumor cells formed through IR-induced mitotic catastrophe have been demonstrated to be able to survive long enough to establish a growing population of cells (for weeks) post-IR [530–533]. PGCCs/MNGCs have been described as flattened tumor cells with extremely enlarged or multiple nuclei with an elevated genomic content when compared to other tumor cells in the same tumor [525,534,535], which confer on them the ability to generate the functions of different cell types via genetic and epigenetic modifications [40]. These cells have been shown to cease to proliferate or proliferate very slowly such that they are often considered as dead cells in the traditional colony formation assay, also referred to as “clonogenic survival”, the gold standard for assessing radiosensitivity of human cells in vitro [40,42]. Several studies involving various tumor cell types have demonstrated that these giant cells are highly adaptable to hypoxic stress and acquire a mesenchymal phenotype with increased expression of CSCs markers, such as CD44, CD133, Oct4, stage-specific embryonic antigen-1 (SSEA-1), NANOG, and SOX2 [526] and ZEB1 [39,522,526,536–538]. The main mechanisms responsible for the formation of PGCCs/MNGCs appear to be associated with cell fusion [539], endoreplication/mitotic bypass [540,541], cytokinesis failure [540,541], and cell cannibalism by entosis [542]. Of note, polyploidy can either be reversible and irreversible [543]. Irreversible polyploidy has been known to occur through DNA re-replication in the absence of mitosis and can reach very high levels of genome duplication up to several thousand or more [544], while PGCCs/MNGCs, which typically do not exceed 32 n, can revert to mitosis and initial paradiploidy [38,533,545]. While most of these cells will undergo cell death following mitotic catastrophe [546], some of them can release continuously small rapidly proliferating viable para-diploid tumor cells termed “Raju, RJ” with extended mitotic life span via “neosis” or “de-polyploidization” [514,546–549]. Neosis, a novel manner of cell division in tumors,
was first reported by Sundaram et al. in 2003 [548]. This peculiar parasexual pattern of somatic reduction division of PGCCs/MNGCs is characterized by karyokinesis through efficient mechanisms, such as nuclear budding/bursting, giving rise to small daughter nuclei; these nuclei then acquire cytoplasm, desperate from the giant mother cells, and exhibit long-term proliferation. The authors referred to this process as the “giant cell cycle” [550]. Additionally, it has been shown that this process involves nuclei remodeling, telomere clustering, and chromosome double loop formation [530,533]. The giant cell cycle is controlled by key regulators of stemness (e.g., Oct4), mitosis (e.g., cyclin B1 and aurora B kinase), and meiosis (e.g., MOS) [537,543,551]. Reduction division of polyploidy cells has been shown to express features of meiotic divisions in a disordered fashion and contribute to genetic diversity rendering tumor cells more apt to survive following antitumor treatments [530,552]. Several studies have demonstrated that RJ cells give rise to transformed cell lines with genomic instability and also display a phenotype and transcriptome different from the mother cell [548]. Compared to diploid cancer cells, RJ cells have been shown to express fewer epithelial markers and gain a mesenchymal phenotype [524]; thus, these cells can stimulate migration, invasion, and anchorage-independent growth [548]. Although their depolyploidization processes can occur at any time post-treatment, it can take several weeks or months until a stable population of daughter cells appears [42,526,553]. It has been found that the retreatment of the recovered cells causes the same process again [41]. In addition, the newly formed RJ cells have been reported to play a role in self-renewal in tumors [554,555] due to their stem-like traits [526,536,556]. Diaz-Carballo et al. [557] documented that PGCCs/MNGCs can confer the surrounding cells’ stemness properties through lateral transfer of a sub-genome, in which PGCCs/MNGCs form intra-cytoplasmic daughter cells that express increased levels of CSCs markers and then transmit into neighboring cells via cytoplasmic tunnels [40]. It has been demonstrated that p53 deficiency is permissive for multipolar and asymmetric divisions of tetraploid cells, resulting in ample alterations in cell cycle progression and formation of aneuploid cells [41,552,553]. It has been shown that the response of radioresistant p53 mutated tumors to genotoxic damage is characterized by a failure to arrest in the G1 phase and induction of mitotic catastrophe [549]. Data on the enrichment of PGCCs/MNGCs following IR exposure were published first by Puck and Marcus for the human HeLa cervical carcinoma cell lines in 1956 [558]. The authors observed using CFA that a large proportion of HeLa cells lost their ability to produce macroscopic colonies (≥50 cells) within 9 days post-IR at a single dose of 7 Gy [558]. Furthermore, they also showed that these cells remained metabolically active for long times post-IR (e.g., 3 weeks), indicating their ability to change medium pH, if the medium was periodically changed. Genotoxic treatment-induced PGCCs/MNGCs have been demonstrated to exhibit increased resistance to DNA damage [41,42,548,553]. Increasing evidence has shown that curbing the genotoxic insults is clearly linked to reversible polyploidy, which itself is associated to a stemness phenotype induction [543]. It has been reported by Weihua et al. that grafting only a single MNGC was sufficient to produce metastatic lung tumors in murine fibrosarcoma model [13]. We have previously demonstrated that hypofractionation regimen causes an increase in the proportion of polyploidy in both p53-null and p53-wt radiotherapy surviving NSCLC sublines compared to parental cells [441]. They provide a powerful survival advantage to cells carrying DNA damage [543]. Polyploidization cycle has been shown to continue on days 3–5, ultimately leading to a polyploidization phase (8–32n). On days 5–6 post-IR, the switch from polyploidization to ploidy reduction divisions emerges [41]. Mirzayans et al. found that the lowest frequency of PGCCs/MNGCs in low-passage primary GBM cell lines was 1 in 20 cells (~5% of total cells) [40]. Based on such observation, the authors evaluated that each ~1 cm³ of brain tumor contains at least 5 million of MNGCs/PGCCs [40]. It has been pointed out that PGCCs/MNGCs are not pre-existing giant cells from the parent population but generate via IR-induced homotypic cell fusion among radioresistant GBM cells [547]. Data from our very recent study have suggested the significance of TP53wt/PTENmut status in the maintenance of in vitro cycling and migration of radioresistant GBM cells to
produce a high number of PGCCs/MNGCs in response to therapeutic IR doses (2–6 Gy). Our current general data have revealed that some TP53wt/PTENmutGBM cells-derived PGCCs/MNGCs can generate RJ cells and finally form large colonies 24 h post-IR (Figure 4). In addition, this work has indicated that differences in the proliferative activity, colony formation, and GBM cell lines radioresistance seem to be related to aneuploidy and neosis and not to a mutant p53 expression (Lina Alhaddad et al., 2022, unpublished data).

<figure><img src="image_98.png" /><figcaption>**Figure 4.** PGCC/MNGC-cell-derived RJ cells in X-ray irradiated GBM U-87 cells.</figcaption></figure>

7. Tumor Microenvironment (TME)

Because the sites of recurrence in GBM and NSCLC following radiotherapy are located
around the radiation-treated areas, it has been suggested that IR may contribute to the
induction of the TME [559,560]. The TME is comprised of a variety of cell types, including
proliferating tumor cells, non-neoplastic stromal cells, endothelial cells (EC), ECM, blood
vessels, infiltrating immune/inflammatory cells, cancer-associated fibroblasts, myeloid sup-
pressor cells (MSCs), regulatory T cells (T<sub>reg</sub>), tumor-associated macrophages (TAMs) [137],
and tumor-infiltrating lymphocytes (TILs). Furthermore, the TME also consists of various
immunosuppressive factors released by all cell types within the tumor to support its growth,
progression, and malignancy, such as prostaglandin E2 [561], adenosine [562], NF-κB, tumor
necrosis factor-alpha (TNF-α) [563], tumor-associated gangliosides [564], immunosuppres-
sive cytokines (for example TGF-β [565], IL-8 [566], and others [567]. All these networks of
various cells and biomolecules in the TME have been shown to contribute to the radiation
response [568]. The defective function of dendritic cells (DCs) has been known to represent
one of the mechanisms of tumor evasion from immune system control [569]. Natural killer
cells, which mediate the innate immune system and engage in reciprocal interactions with
macrophages, DCs, T cells, and endothelial cells, are conspicuously absent from most tumor
infiltrates [570,571]. Recent studies have pointed to the potential of the TME to initiate SC
programs. TILs, containing various proportions of CD3+CD4+ and CD3+CD8+ T cells, are
usually a major component of the TME [572]. TAMs have been known to be involved in
inducing angiogenesis, tumor growth, migration, metastasis, invasion, immunosuppres-
sion, and resistance against radiotherapy through secreting many inhibitory chemokines
and cytokines, such as IL-6, IL-8, IL-10, IL-34, colony-stimulating factor 1 (CSF-1), tumor
necrosis factor, prostaglandin E2, MMPs, and CCL2, CCL5, and CCL18 [573,574]. It has
been well documented that MSCs regulate the immune response under normal physiologic
conditions by interacting with various immune cells [575] and the maturation, differentia-
tion, proliferation, and functional activation of peripheral blood mononuclear cells [576], but in the tumor, presence are subverted to induce its escape [577,578]. MSCs have been shown to be increased in the peripheral blood of patients with various tumors [579]. MSCs present in the TME have been found to promote tumor growth and suppress immune cell functions, as well as display radioprotective activity through copious production of an arginase 1, an enzyme involved in the metabolism of L-arginine, which synergizes with nitric oxide synthase to increase superoxide and nitric oxide production, blunting lymphocyte responses [580,581]. MSCs also suppress T-cell responses in the TME. Tumors release TGF-β or promote TGF-β secretion from MSCs [582]. In addition, indoleamine-2,3-dioxygenase (IDO) secreted by MSCs has been reported to be involved in the breaking down of tryptophan, an essential amino acid for differentiation and T-cell proliferation [583]. Tumors produce ample factors, including IL-6, IL-10, CSF-1, granulocyte- macrophage CSF (GM-CSF), VEGF, which elicit MSC recruitment and block lymphocyte functions, as well as DCs maturation [582]. Polymorphonuclear leukocytes have been infrequently seen in tumor infiltrates [584]. Inflammatory cells present in the TME have been reported to contribute to tumor progression [577]. Tregs are a characteristic feature of the TME and represent potent mediators of dominant self-tolerance in the periphery [585,586]. Accumulations of Tregs in the TME characterized by the expression of the forkhead/winged helix transcription factor (Foxp3) have been reported to promote tumor progression and prognosis, as well as downregulate effective antitumor immune responses in tumor-bearing hosts, thereby deterring tumor immune surveillance [587–589]. In the process of tumor immune escape, Tregs have been shown to suppress antigen presentation by myeloid-derived suppressor cells [590], DCs, CD4+ T helper (Th) cells and generate tumor-specific CD8+ cytotoxic T lymphocytes through TGF-β, IL-10, and IL-35 secretion (epstein-barr virus induced 3-IL-12α heterodimer) [586,591]. Treg-expressing cytotoxic T lymphocytes associated antigen 4 have been found to combine with CD80 and CD86 on the surface of DCs, leading to reduced DCs maturation [592], as well as Tregs promote the immunosuppressive capacity of myeloid-derived suppressor cells via the programmed cell death ligand 1 (PD-L1) pathway [590]. Furthermore, it has been suggested that Tregs interfere with cell metabolism mainly in two ways: (a) IL-2 deficiency in the TME, thus inhibiting the growth of effector T cells [593]; (b) CD39 and CD73, which are constitutionally expressed in human Tregs, can hydrolyze extracellular ATP or ADP into AMP and produce adenosine [594]. Several Tregs subsets have been recognized in tumors: (a) natural Tregs (nTregs), which obstruct the proliferation of other T cells in the TME through contact-dependent mechanisms involving the CD95 or granzyme B/perforin pathways, and they have been found to be responsible for maintaining peripheral tolerance to self [595]; (b) inducible Tregs (iTregs) also referred to as type 1 regulatory T cells (Tr1), which are induced in the periphery following chronic antigenic stimulation in the presence of IL-10 derived from tolerogenic antigen-presenting cells [596]. Additionally, FOXP3+CD3+CD4+CD25+ phenotype has been found to occur in nTreg [597], while CD4+CD25lowCD132+TGF-β+IL-10+IL-4- phenotype has been considered to be a classical combined marker of Tr1 [586]. The GBM TME has been shown to be more immunosuppressive compared to other malignancies due to the release of potent immunosuppressive cytokines (e.g., IL-10 and TGF-β) [598]), negative regulators of effector cell functions (e.g., programmed death-ligand 1 and IDO), and oncometabolites (e.g., (R)-2-hydroxyglutarate6 and O6-methylguanine-DNA methyltransferase promoter methylation) [599]. It has been demonstrated that tumor-infiltrating neutrophils facilitate GSCs accumulation through S100A1 upregulation [600]. It has been shown that soluble factors secreted by endothelial cells maintain the self-renewal of GSCs and facilitate the initiation and growth of tumors [601]. It has been indicated that IR enhances the invasiveness of NSCLC via GM-CSF [602]. The expression level of IL-23 has been reported to be elevated in NSCLC patients after radiotherapy in response to the secretion of growth factors, signaling molecules, and anti-apoptosis factors compared to non-irradiated serum samples [333].
## 8. The Potential Treatment of Radioresistance in Glioblastoma and Non-Small-Cell Lung Cancer

Radiotherapy is a modality of oncologic treatment that can be used to treat about 50% of all cancer patients either alone or in combination with other treatment modalities such as chemotherapy, surgery, immunotherapy, and therapeutic targeting. Standard radiotherapy for GBM and NSCLC malignancies is not target-specific against them and is often not fully effective. The need to improve additional strategies for the treatment of these cancers is urgent. As mentioned previously, a major factor related to radioresistance is the existence of CSCs inside tumors, which are responsible for metastases, relapses, and radiotherapy failure. The intrinsic radioresistance of CSCs reveals the need to reassess the underlying mechanisms of the response of tumors to conventional and novel radiotherapy with a specific focus on CSCs. The identification of molecular targets that control CSCs can contribute to the development of novel chemotherapeutic drugs able to eliminate and prevent new CSCs growth in patients. This will help prevent metastasis and tumor relapse with a reduction of morbidity and toxicity, ultimately improving the outcomes in cancer patients. In order to conquer CSCs' radioresistance to conventional radiotherapy, different strategies such as immunotherapy, gene therapy, molecular inhibition, and combination therapy have been widely investigated. Moreover, although many patients are still treated with conventional radiotherapy, other modern radiotherapy techniques have been developed, such as stereotactic body radiotherapy, hadron, and ultra-high dose-rate radiation therapy, which delivers precise high doses of radiation to target local tumors.

## 9. Conclusions and Perspectives

Collectively, the unique proprieties of CSCs, such as the ability to sustain a pool of undifferentiated stem cells through self-renewal, a high level of plasticity due to their adaptation to the TME pressures, including oxidative stress and immunosuppression, remarkable tumorigenic and metastatic capabilities, and an efficient DNA damage repair, make them the root of tumor relapse. The identification of CSCs within GBM and NSCLC may therefore be critical to hinder tumor radioresistance. IR-induced proliferation arrest and polyploidy can favor the emergence of highly tolerable stem-like phenotype and self-renewal potential in these tumors, thereby targeting quiescent cancer cells, prematurely senescent, and PGCCs/MNGCs in conjunction with radiotherapy for patients diagnosed with GBM and NSCLC may also represent an attractive avenue to circumvent their advanced malignancy and recurrence.

**Author Contributions:** Conceptualization, L.A.; data acquisition, L.A.; writing—original draft preparation, L.A.; visualization, L.A.; writing—review and editing, L.A., S.L., and A.N.O.; supervision S.L. and A.N.O. All authors have read and agreed to the published version of the manuscript.

**Funding:** The studies were supported by the Russian Foundation for Basic Research (RFBR) project # 20-34-90035. The S.L. work was supported by the strategic academic leadership program 'Priority 2030' (Agreement 075-02-2021-1316 30 September 2021).

**Institutional Review Board Statement:** Not applicable.

**Informed Consent Statement:** Not applicable.

**Data Availability Statement:** Not applicable.

**Conflicts of Interest:** The authors declare no conflict of interest.

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<figure><img src="image_99.png" /></figure>

Article

# Radiation-Induced Bystander Effect Mediated by Exosomes Involves the Replication Stress in Recipient Cells

Mateusz Smolarz <fnref n="1" />, Łukasz Skoczylas <fnref n="1" />,*, Marta Gawin <fnref n="1" />,*, Monika Krzyżowska <fnref n="1" />, Monika Pietrowska <fnref n="1" />,* and Piotr Widlak <fnref n="2" />,*,†

<figure><img src="image_100.png" /></figure>

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**Citation:** Smolarz, M.; Skoczylas, Ł.; Gawin, M.; Krzyżowska, M.; Pietrowska, M.; Widlak, P. Radiation-Induced Bystander Effect Mediated by Exosomes Involves the Replication Stress in Recipient Cells. *Int. J. Mol. Sci.* **2022**, *23*, 4169.
https://doi.org/10.3390/ijms23084169

Academic Editor: François Chevalier

Received: 8 March 2022

Accepted: 7 April 2022

Published: 10 April 2022

**Publisher's Note:** MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations.

<figure><img src="image_101.png" /></figure>

**Copyright:** © 2022 by the authors.
Licensee MDPI, Basel, Switzerland.
This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).

**Abstract:** Exosomes released by irradiated cells mediate the radiation-induced bystander effect, which is manifested by DNA breaks detected in recipient cells; yet, the specific mechanism responsible for the generation of chromosome lesions remains unclear. In this study, naive FaDu head and neck cancer cells were stimulated with exosomes released by irradiated (a single 2 Gy dose) or mock-irradiated cells. Maximum accumulation of gamma H2A.X foci, a marker of DNA breaks, was detected after one hour of stimulation with exosomes from irradiated donors, the level of which was comparable to the one observed in directly irradiated cells (a weaker wave of the gamma H2A.X foci accumulation was also noted after 23 h of stimulation). Exosomes from irradiated cells, but not from control ones, activated two stress-induced protein kinases: ATM and ATR. Noteworthy is that while direct irradiation activated only ATM, both ATM and ATR were activated by two factors known to induce the replication stress: hydroxyurea and camptothecin (with subsequent phosphorylation of gamma H2A.X). One hour of stimulation with exosomes from irradiated cells suppressed DNA synthesis in recipient cells and resulted in the subsequent nuclear accumulation of RNA:DNA hybrids, which is an indicator of impaired replication. Interestingly, the abovementioned effects were observed before a substantial internalization of exosomes, which may suggest a receptor-mediated mechanism. It was observed that after one hour of stimulation with exosomes from irradiated donors, phosphorylation of several nuclear proteins, including replication factors and regulators of heterochromatin remodeling as well as components of multiple intracellular signaling pathways increased. Hence, we concluded that the bystander effect mediated by exosomes released from irradiated cells involves the replication stress in recipient cells.

**Keywords:** bystander effect; exosomes; ionizing radiation; non-targeted effects of radiation; replication stress

## 1. Introduction

The radiation-induced bystander effect (RIBE) is a phenomenon in which non-irradiated cells exhibit several molecular and cellular features typical for a response to ionizing radiation. Such effects, which include changes in gene and protein expression, proliferation, genetic instability, and cell death, are the results of different signals received from nearby (or distant) directly irradiated cells. Clastogenic effects, including DNA strand breaks, chromosome aberrations, and mutations, are the most characteristic features of RIBE. Therefore, it is postulated that local irradiation (e.g., during radiotherapy) may cause systemic cytotoxic and genotoxic damages outside of the radiation field and can even lead to carcinogenic effects beyond the therapy field. Although there is no generally accepted direct evidence yet, it has been suggested that RIBE (and other potential "non-targeted"

<footnote n="1">¹ Maria Skłodowska-Curie National Research Institute of Oncology, 44-102 Gliwice, Poland; mateusz.smolarz@io.gliwice.pl (M.S.); lukasz.skoczylas@io.gliwice.pl (Ł.S.); marta.gawin@io.gliwice.pl (M.G.); monikaxx41@interia.pl (M.K.)</footnote>

<footnote n="2">² Clinical Research Support Centre, Medical University of Gdańsk, 80-210 Gdańsk, Poland</footnote>

<footnote>* Correspondence: monika.pietrowska@io.gliwice.pl (M.P.); piotr.widlak@gumed.edu.pl (P.W.); Tel.: +48-32-278-9627 (M.P.); +48-58-349-2767 (P.W.)</footnote>