# EOSC-Life: Build the Life Science European Science Cloud

Anne-Françoise Adam-Blondon

► To cite this version:

Anne-Françoise Adam-Blondon. EOSC-Life: Build the Life Science European Science Cloud. Eventement Tripartite de l'EOSC France, EOSC-France, Jun 2023, Montpellier, France. hal-04502934

HAL Id: hal-04502934

https://hal.inrae.fr/hal-04502934

Submitted on 13 Mar 2024

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# EOSC-Life : Build the Life Science European Science Cloud

A-F Adam-Blondon, deputy head of ELIXIR-FR, INRAE
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# EOSC-Life : Build the Life Science European Science Cloud

A-F Adam-Blondon, deputy head of ELIXIR-FR, INRAE
- Started in 2019 – ends in 2023

- 13 ESFRI in Life Sciences, 47 Partners and 17 linked 3rd parties

- 26 M€

- Two WPs added in 2020 in response to the COVID-19 crisis

European Open Science Cloud

<figure><img src="image_2.png" /></figure>

Enable researchers to access data, storage and compute ("cloud") via a Europe-wide federation of IT services ("e-infrastructure")

E-Infrastructure consolidation

<figure><img src="image_3.png" /></figure>

Drive the transition to Open Science (Open Data, Open Standards, Open Literature), to bring research benefits to European societies at large

Open Science

<figure><img src="image_4.png" /></figure>

Populate EOSC with the scientific data resources and computational tools from research infrastructures - drive usage by Europe's 1.7 million researchers

Scientific Communities' content and users

<figure><img src="image_5.png" /></figure>

<figure><img src="image_6.png" /></figure>

<figure><img src="image_7.png" /></figure>

This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 824087
- Started in 2019 – ends in 2023

- 13 ESFRI in Life Sciences, 47 Partners and 17 linked 3rd parties

- 26 M€

- Two WPs added in 2020 in response to the COVID-19 crisis

## European Open Science Cloud

<figure><img src="image_3.png" /></figure>

Enable researchers to access data, storage and compute ("cloud") via a Europe-wide federation of IT services ("e-infrastructure")

E-Infrastructure consolidation

<figure><img src="image_4.png" /></figure>

Drive the transition to Open Science (Open Data, Open Standards, Open Literature), to bring research benefits to European societies at large

Open Science

<figure><img src="image_5.png" /></figure>

Populate EOSC with the scientific data resources and computational tools from research infrastructures - drive usage by Europe's 1.7 million researchers

Scientific Communities' content and users

<figure><img src="image_6.png" /></figure>

<figure><img src="image_7.png" /></figure>

<figure><img src="image_8.png" /></figure>

This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 824087
<figure><img src="image_8.png" /></figure>

EOSC Life partners and solutions were quickly mobilized to:

- foster collaborations: International COVID-19 Biohackathon + Cloud resources

- Frontloading of open tools and workflows: https:// workflowhub.eu/, https://usegalaxy.eu/

- Build a repository for COVID-19 clinical trial data

- Extension of the COVID-19 Data Portal: https://www.covid19dataportal.org/

<figure><img src="image_9.png" /></figure>

<figure><img src="image_10.png" /></figure>

<figure><img src="image_11.png" /></figure>

COVID-19 Data Portal
<figure><img src="image_9.png" /></figure>

EOSC Life partners and solutions were quickly mobilized to:

- foster collaborations: International COVID-19 Biohackathon + Cloud resources

- Frontloading of open tools and workflows: https:// workflowhub.eu/, https://usegalaxy.eu/

- Build a repository for COVID-19 clinical trial data

- Extension of the COVID-19 Data Portal: https://www.covid19dataportal.org/

<figure><img src="image_10.png" /></figure>

<figure><img src="image_11.png" /></figure>

<figure><img src="image_12.png" /></figure>

COVID-19 Data Portal
<figure><img src="image_12.png" /></figure>

* **FAIRsharing EOSC-Life collection** with more than a 100 of datasets : https://fairsharing.org/3513

* **Provenance standard for life science data** (ISO 23494) describing all the history of the data, including sensitive data and compliant with the Nagoya protocole + EML technical implementation

<figure><img src="image_13.png" /></figure>
<figure><img src="image_13.png" /></figure>

* **FAIRsharing EOSC-Life collection** with more than a 100 of datasets : https://fairsharing.org/3513

* **Provenance standard for life science data** (ISO 23494) describing all the history of the data, including sensitive data and compliant with the Nagoya protocole + EML technical implementation

<figure><img src="image_14.png" /></figure>
* 2019 - 2023

* 5M€ + 4M€ pour 3 WP COVID 19

* Complement/in synergy with
EOSC Life

<figure><img src="image_14.png" /></figure>

elixir
CONVERGE

ELIXIR-Converge has received funding from the European Union's Horizon 2020 Research and Innovation programme under grant agreement No 871075.

* Major outputs:

* ELIXIR RDM community

* RDMkit: collaboratif knowledge
    portal in support to Data
    Management Planning

<figure><img src="image_15.png" /></figure>

Best practices

Tools

Bio.tools

Services

Data Stewardship
Wizard

Resources

FAIRcookbook

Standards

FAIRsharing

Training

TeSS
* 2019 - 2023

* 5M€ + 4M€ pour 3 WP COVID 19

* Complement/in synergy with
EOSC Life

<figure><img src="image_15.png" /></figure>

elixir
CONVERGE

ELIXIR-Converge has received funding from the European Union's Horizon 2020 Research and Innovation programme under grant agreement No 871075.

* Major outputs:

* ELIXIR RDM community

* RDMkit: collaboratif knowledge
    portal in support to Data
    Management Planning

<figure><img src="image_16.png" /></figure>

Best practices

Tools

Bio.tools

Services

Data Stewardship
Wizard

Resources

FAIRcookbook

Standards

FAIRsharing

Training

TeSS
<figure><img src="image_16.png" /></figure>

* **WorkflowHub**

* a registry of scientific workflows to make them more findable

* Adoption par Australia
  BioCommons

* **RO-Crate**
  (https://www.researchobject.org/ro-crate/)

* formalize packaging of research data with structured metadata (including provenance) using schema.org.

* Integrated in workflowhub and Galaxy.

* Adopted by projects/infrastructures to create FAIR digital objects (e.g. DISSCO SYNTHESIS +, Bidiversity Genome Europe)

<figure><img src="image_17.png" /></figure>
<figure><img src="image_17.png" /></figure>

* **WorkflowHub**

* a registry of scientific workflows to make them more findable

* Adoption par Australia
  BioCommons

* **RO-Crate**
  (https://www.researchobject.org/ro-crate/)

* formalize packaging of research data with structured metadata (including provenance) using schema.org.

* Integrated in workflowhub and Galaxy.

* Adopted by projects/infrastructures to create FAIR digital objects (e.g. DISSCO SYNTHESIS +, Bidiversity Genome Europe)

<figure><img src="image_18.png" /></figure>
* Cloud deployment and cloud resources + identification of suitable providers for sensitive resources

<figure><img src="image_18.png" /></figure>

* Providing access: **LS LOGIN system**

* Connecting, informing and training users

<figure><img src="image_19.png" /></figure>
* Cloud deployment and cloud resources + identification of suitable providers for sensitive resources

<figure><img src="image_19.png" /></figure>

* Providing access: **LS LOGIN** system

* Connecting, informing and training users

<figure><img src="image_20.png" /></figure>
<figure><img src="image_20.png" /></figure>

<figure><img src="image_21.png" /></figure>

EOSC-Life has received funding from the
European Union's Horizon 2020 programme
under grant agreement number 824087.

<figure><img src="image_22.png" /></figure>

INSTITUT FRANÇAIS DE BIOINFORMATIQUE

IFB

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FRANCE

Thank you!

Sources:

* https://www.eosc-life.eu/wp-content/uploads/2021/03/eosc-life-achievements-brochure-Final.pdf

* Romano P, Rosato A & EOSC-Life project Consortium (2022) https://doi.org/10.5281/zenodo.7853116

<figure><img src="image_24.png" /></figure>
<figure><img src="image_21.png" /></figure>

<figure><img src="image_22.png" /></figure>

EOSC-Life has received funding from the
European Union's Horizon 2020 programme
under grant agreement number 824087.

<figure><img src="image_23.png" /></figure>

INSTITUT FRANÇAIS DE BIOINFORMATIQUE

IFB

<figure><img src="image_24.png" /></figure>

FRANCE

Thank you!

Sources:

* https://www.eosc-life.eu/wp-content/uploads/2021/03/eosc-life-achievements-brochure-Final.pdf

* Romano P, Rosato A & EOSC-Life project Consortium (2022) https://doi.org/10.5281/zenodo.7853116

<figure><img src="image_25.png" /></figure>