153. M. Alqahtani, M. Nopoush, M. Strickland, Quasiparticle anisotropic hydrodynamics for central collisions. Phys. Rev. C 95(3), 034906 (2017). https://doi.org/10.1103/PhysRevC.95.034906. arXiv:1605.02101 [nucl-th]

154. M. Alqahtani, M. Nopoush, M. Strickland, Relativistic anisotropic hydrodynamics. Prog. Part. Nucl. Phys. 101, 204–248 (2018). https://doi.org/10.1016/j.ppnp.2018.05.004. arXiv:1712.03282 [nucl-th]

155. M. Alqahtani, M. Nopoush, R. Ryblewski, M. Strickland, (3+1)D Quasiparticle Anisotropic Hydrodynamics for Ultrarelativistic Heavy-Ion Collisions. Phys. Rev. Lett. 119(4), 042301 (2017). https://doi.org/10.1103/PhysRevLett.119.042301. arXiv:1703.05808 [nucl-th]

156. M. Alqahtani, M. Nopoush, R. Ryblewski, M. Strickland, Anisotropic hydrodynamic modeling of 2.76 TeV Pb-Pb collisions. Phys. Rev. C 96(4), 044910 (2017). https://doi.org/10.1103/PhysRevC.96.044910. arXiv:1705.10191 [nucl-th]

157. M. Nopoush, R. Ryblewski, M. Strickland, Bulk viscous evolution within anisotropic hydrodynamics. Phys. Rev. C 90(1), 014908 (2014). https://doi.org/10.1103/PhysRevC.90.014908. arXiv:1405.1355 [hep-ph]

158. D. Almaalol, M. Alqahtani, M. Strickland, Anisotropic hydrodynamic modeling of 200 GeV Au-Au collisions. Phys. Rev. C 99(4), 044902 (2019). https://doi.org/10.1103/PhysRevC.99.044902. arXiv:1807.04337 [nucl-th]

159. M. Alqahtani, M. Strickland, Pion interferometry at 200 GeV using anisotropic hydrodynamics. Phys. Rev. C 102(6), 064902 (2020). https://doi.org/10.1103/PhysRevC.102.064902. arXiv:2007.04209 [nucl-th]

160. M. Alqahtani, M. Strickland, Bulk observables at 5.02 TeV using quasiparticle anisotropic hydrodynamics. Eur. Phys. J. C 81(11), 1022 (2021). https://doi.org/10.1140/epjc/s10052-021-09832-z. arXiv:2008.07657 [nucl-th]

161. A. Bazavov, An overview of (selected) recent results in finite-temperature lattice QCD. J. Phys. Conf. Ser. 446, 012011 (2013). https://doi.org/10.1088/1742-6596/446/1/012011. arXiv:1303.6294 [hep-lat]

162. G. Aad et al., Production of Υ(nS) mesons in Pb+Pb and pp collisions at 5.02 TeV. Phys. Rev. C 107(5), 054912 (2023). https://doi.org/10.1103/PhysRevC.107.054912. arXiv:2205.03042 [nucl-ex]

163. CMS Collaboration: Observation of the Υ(3S) meson and sequential suppression of Υ states in PbPb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV. Technical report, CERN, Geneva (2022). https://cds.cern.ch/record/2805926

164. S. Delorme, Theoretical description of quarkonia dynamics in the quark-gluon plasma with a quantum master equation approach. PhD thesis, École Nationale Supérieure Mines-Télécom Atlantique Bretagne Pays de la Loire - IMT Atlantique (2021)

165. S. Delorme, T. Gousset, R. Katz, P.B. Gossiaux, Heavy Quarkonium Dynamics in the QGP with a Quantum Master Equation Approach. Acta Phys. Pol. B Proc. Suppl. 16, 1–112 (2023)

166. R. Katz, S. Delorme, P.-B. Gossiaux, One-dimensional complex potentials for quarkonia in a quark-gluon plasma. Eur. Phys. J. A 58(10), 198 (2022). https://doi.org/10.1140/epja/s10050-022-00846-z. arXiv:2205.05154 [hep-ph]

167. J. Zhao, J. Aichelin, P.B. Gossiaux, K. Werner, Heavy flavor as a probe of hot QCD matter produced in proton-proton collisions (2023) arXiv:2310.08684 [hep-ph]

168. E.A. Remler, A.P. Sathe, Quasi-Classical Scattering Theory and Bound State Production Processes. Annals Phys. 91, 295–324 (1975). https://doi.org/10.1016/0003-4916(75)90223-7

169. E.A. Remler, Use of the Wigner Representation in Scattering Problems. Annals Phys. 95, 455–495 (1975). https://doi.org/10.1016/0003-4916(75)90065-2

170. E.A. Remler, Composite Particle Cross-sections From the Density Operator. Annals Phys. 136, 293 (1981). https://doi.org/10.1016/0003-4916(81)90100-7

171. M. Gyulassy, K. Frankel, E.A. Remler, DEUTERON FORMATION IN NUCLEAR COLLISIONS. Nucl. Phys. A 402, 596–611 (1983). https://doi.org/10.1016/0375-9474(83)90222-1

172. T. Song, J. Aichelin, E. Bratkovskaya, Charmonium production in a thermalizing heat bath. Phys. Rev. C 107(5), 054906 (2023). https://doi.org/10.1103/PhysRevC.107.054906. arXiv:2302.14001 [hep-ph]

173. T. Sjostrand, S. Mrenna, P.Z. Skands, PYTHIA 6.4 Physics and Manual. JHEP 05, 026 (2006). https://doi.org/10.1088/1126-6708/2006/05/026. arXiv:hep-ph/0603175

174. M. Cacciari, S. Frixione, N. Houdeau, M.L. Mangano, P. Nason, G. Ridolfi, Theoretical predictions for charm and bottom production at the LHC. JHEP 10, 137 (2012). https://doi.org/10.1007/JHEP10(2012)137. arXiv:1205.6344 [hep-ph]

175. T. Song, J. Aichelin, E. Bratkovskaya, Production of primordial $J/\psi$ in relativistic $p+p$ and heavy-ion collisions. Phys. Rev. C 96(1), 014907 (2017). https://doi.org/10.1103/PhysRevC.96.014907. arXiv:1705.00046 [nucl-th]

176. K.J. Eskola, H. Paukkunen, C.A. Salgado, EPS09: A New Generation of NLO and LO Nuclear Parton Distribution Functions. JHEP 04, 065 (2009). https://doi.org/10.1088/1126-6708/2009/04/065. arXiv:0902.4154 [hep-ph]

177. T. Song, J. Aichelin, J. Zhao, P.B. Gossiaux, E. Bratkovskaya, Botomonium production in pp and heavy-ion collisions. Phys. Rev. C 108(5), 054908 (2023). https://doi.org/10.1103/PhysRevC.108.054908. arXiv:2305.10750 [nucl-th]

178. H. Berrehrah, E. Bratkovskaya, W. Cassing, P.B. Gossiaux, J. Aichelin, M. Bleicher, Collisional processes of on-shell and off-shell heavy quarks in vacuum and in the Quark-Gluon-Plasma. Phys. Rev. C 89(5), 054901 (2014). https://doi.org/10.1103/PhysRevC.89.054901. arXiv:1308.5148 [hep-ph]

179. T. Song, H. Berrehrah, D. Cabrera, J.M. Torres-Rincon, L. Tolos, W. Cassing, E. Bratkovskaya, Tomography of the Quark-Gluon-Plasma by Charm Quarks. Phys. Rev. C 92(1), 014910 (2015). https://doi.org/10.1103/PhysRevC.92.014910. arXiv:1503.03039 [nucl-th]

180. T. Song, H. Berrehrah, J.M. Torres-Rincon, L. Tolos, D. Cabrera, W. Cassing, E. Bratkovskaya, Single electrons from heavy-flavor mesons in relativistic heavy-ion collisions. Phys. Rev. C 96(1), 014905 (2017). https://doi.org/10.1103/PhysRevC.96.014905. arXiv:1605.07887 [nucl-th]

181. T. Song, P. Moreau, J. Aichelin, E. Bratkovskaya, Exploring non-equilibrium quark-gluon plasma effects on charm transport coefficients. Phys. Rev. C 101(4), 044901 (2020). https://doi.org/10.1103/PhysRevC.101.044901. arXiv:1910.09889 [nucl-th]

182. E.L. Bratkovskaya, W. Cassing, H. Stoecker, Open charm and charmonium production at RHIC. Phys. Rev. C 67, 054905 (2003). https://doi.org/10.1103/PhysRevC.67.054905. arXiv:nucl-th/0301083

183. M. Cacciari, P. Nason, R. Vogt, QCD predictions for charm and bottom production at RHIC. Phys. Rev. Lett. 95, 122001 (2005). https://doi.org/10.1103/PhysRevLett.95.122001. arXiv:hep-ph/0502203

184. T. Song, H. Berrehrah, D. Cabrera, W. Cassing, E. Bratkovskaya, Charm production in Pb + Pb collisions at energies available at the CERN Large Hadron Collider. Phys. Rev. C 93(3), 034906 (2016). https://doi.org/10.1103/PhysRevC.93.034906. arXiv:1512.00891 [nucl-th]

185. W. Cassing, E.L. Bratkovskaya, Parton transport and hadronization from the dynamical quasiparticle point of view. Phys. Rev. C 78, 034919 (2008). https://doi.org/10.1103/PhysRevC.78.034919. arXiv:0808.0022 [hep-ph]
186. W. Cassing, From Kadanoff-Baym dynamics to off-shell parton transport. Eur. Phys. J. ST **168**, 3–87 (2009). https://doi.org/10.1140/epjst/e2009-00959-x. arXiv:0808.0715 [nucl-th]

187. W. Cassing, E.L. Bratkovskaya, Parton-Hadron-String Dynamics: an off-shell transport approach for relativistic energies. Nucl. Phys. A **831**, 215–242 (2009). https://doi.org/10.1016/j.nuclphysa.2009.09.007. arXiv:0907.5331 [nucl-th]

188. E.L. Bratkovskaya, W. Cassing, V.P. Konchakovski, O. Linnyk, Parton-Hadron-String Dynamics at Relativistic Collider Energies. Nucl. Phys. A **856**, 162–182 (2011). https://doi.org/10.1016/j.nuclphysa.2011.03.003. arXiv:1101.5793 [nucl-th]

189. O. Linnyk, E.L. Bratkovskaya, W. Cassing, Effective QCD and transport description of dilepton and photon production in heavy-ion collisions and elementary processes. Prog. Part. Nucl. Phys. **87**, 50–115 (2016). https://doi.org/10.1016/j.ppnp.2015.12.003. arXiv:1512.08126 [nucl-th]

190. J.-P. Blaizot, M.A. Escobedo, Approach to equilibrium of a quarkonium in a quark-gluon plasma. Phys. Rev. D **98**(7), 074007 (2018). https://doi.org/10.1103/PhysRevD.98.074007. arXiv:1803.07996 [hep-ph]

191. J.-P. Blaizot, M.A. Escobedo, Phenomenological study of quarkonium suppression and the impact of the energy gap between singlets and octets. Phys. Rev. D **104**(5), 054034 (2021). https://doi.org/10.1103/PhysRevD.104.054034. arXiv:2106.15371 [hep-ph]

192. A. Capella, A. Kaidalov, A. Kouider Akil, C. Gerschel, J / psi and psi-prime suppression in heavy ion collisions. Phys. Lett. B **393**, 431–436 (1997). https://doi.org/10.1016/S0370-2693(96)01650-4. arXiv:hep-ph/9607265

193. N. Armesto, A. Capella, A Quantitative reanalysis of J / psi suppression in nuclear collisions. Phys. Lett. B **430**, 23–31 (1998). https://doi.org/10.1016/S0370-2693(98)00487-0. arXiv:hep-ph/9705275

194. N. Armesto, A. Capella, E.G. Ferreiro, Charmonium suppression in lead-lead collisions: Is there a break in the J / psi cross-section? Phys. Rev. C **59**, 395–404 (1999). https://doi.org/10.1103/PhysRevC.59.395. arXiv:hep-ph/9807258

195. A. Capella, E.G. Ferreiro, A.B. Kaidalov, Nonsaturation of the J / psi suppression at large transverse energy in the comovers approach. Phys. Rev. Lett. **85**, 2080–2083 (2000). https://doi.org/10.1103/PhysRevLett.85.2080. arXiv:hep-ph/0002300

196. E.G. Ferreiro, J.-P. Lansberg Is bottomonium suppression in proton-nucleus and nucleus-nucleus collisions at LHC energies due to the same effects? JHEP **10**, 094 (2018). https://doi.org/10.1007/JHEP10(2018)094. arXiv:1804.04474 [hep-ph]. [Erratum: JHEP 03, 063 (2019)]

197. A. Capella, L. Bravina, E.G. Ferreiro, A.B. Kaidalov, K. Tywo-niuk, E. Zabrodin, Charmonium dissociation and recombination at RHIC and LHC. Eur. Phys. J. C **58**, 437–444 (2008). https://doi.org/10.1140/epjc/s10052-008-0772-6. arXiv:0712.4331 [hep-ph]

198. E.G. Ferreiro, Charmonium dissociation and recombination at LHC: Revisiting comovers. Phys. Lett. B **731**, 57–63 (2014). https://doi.org/10.1016/j.physletb.2014.02.011. arXiv:1210.3209 [hep-ph]

199. E.G. Ferreiro, Excited charmonium suppression in proton-nucleus collisions as a consequence of comovers. Phys. Lett. B **749**, 98–103 (2015). https://doi.org/10.1016/j.physletb.2015.07.066. arXiv:1411.0549 [hep-ph]

200. P. Braun-Munzinger, J. Stachel, (Non)thermal aspects of charmonium production and a new look at J / psi suppression. Phys. Lett. B **490**, 196–202 (2000). https://doi.org/10.1016/S0370-2693(00)00991-6. arXiv:nucl-th/0007059

201. A. Andronic, P. Braun-Munzinger, K. Redlich, J. Stachel, Statistical hadronization of heavy quarks in ultra-relativistic nucleus-nucleus collisions. Nucl. Phys. A **789**, 334–356 (2007). https://doi.org/10.1016/j.nuclphysa.2007.02.013. arXiv:nucl-th/0611023

202. A. Andronic, P. Braun-Munzinger, M.K. Köhler, A. Mazelauskas, K. Redlich, J. Stachel, V. Vislavicius, The multiple-charm hierarchy in the statistical hadronization model. JHEP **07**, 035 (2021). https://doi.org/10.1007/JHEP07(2021)035. arXiv:2104.12754 [hep-ph]

203. A. Andronic, P. Braun-Munzinger, K. Redlich, J. Stachel, Charmonium and open charm production in nuclear collisions at SPS/FAIR energies and the possible influence of a hot hadronic medium. Phys. Lett. B **659**, 149–155 (2008). https://doi.org/10.1016/j.physletb.2007.10.064. arXiv:0708.1488 [nucl-th]

204. S. Acharya et al., Prompt $D^0$, $D^+$, and $D^{*+}$ production in Pb-Pb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV. JHEP **01**, 174 (2022). https://doi.org/10.1007/JHEP01(2022)174. arXiv:2110.09420 [nucl-ex]

205. B. Schenke, S. Jeon, C. Gale, Elliptic and triangular flow in event-by-event (3+1)D viscous hydrodynamics. Phys. Rev. Lett. **106**, 042301 (2011). https://doi.org/10.1103/PhysRevLett.106.042301. arXiv:1009.3244 [hep-ph]

206. S. Floerchinger, E. Grossi, J. Lion, Fluid dynamics of heavy ion collisions with mode expansion. Phys. Rev. C **100**(1), 014905 (2019). https://doi.org/10.1103/PhysRevC.100.014905. arXiv:1811.01870 [nucl-th]

207. A. Andronic, P. Braun-Munzinger, H. Brunßen, J. Crkovská, J. Stachel, V. Vislavicius, M. Vökl, Transverse dynamics of charmed hadrons in ultra-relativistic nuclear collisions (2023) arXiv:2308.14821 [hep-ph]

208. A. Andronic, P. Braun-Munzinger, K. Redlich, J. Stachel, Statistical Hadronization of b-quarks in Pb-Pb Collisions at LHC Energy: A Case for Partial Equilibration of b-quarks? Acta Phys. Polon. Supp. **16**(1), 107 (2023). https://doi.org/10.5506/APhysPolBSupp.16.1-A107. arXiv:2209.14562 [hep-ph]

209. X. Zhao, R. Rapp, Medium Modifications and Production of Charmonia at LHC. Nucl. Phys. A **859**, 114–125 (2011). https://doi.org/10.1016/j.nuclphysa.2011.05.001. arXiv:1102.2194 [hep-ph]

210. X. Du, R. Rapp, Sequential Regeneration of Charmonia in Heavy-Ion Collisions. Nucl. Phys. A **943**, 147–158 (2015). https://doi.org/10.1016/j.nuclphysa.2015.09.006. arXiv:1504.00670 [hep-ph]

211. L. Grandchamp, S. Lumpkins, D. Sun, H. Hees, R. Rapp, Bottomonium production at RHIC and CERN LHC. Phys. Rev. C **73**, 064906 (2006). https://doi.org/10.1103/PhysRevC.73.064906. arXiv:0507314 [hep-ph]

212. B. Wu, Z. Tang, M. He, R. Rapp, Recombination of Bc mesons in ultrarelativistic heavy-ion collisions. Phys. Rev. C **109**(1), 014906 (2024). https://doi.org/10.1103/PhysRevC.109.014906. arXiv:2302.11511 [nucl-th]

213. B. Wu, X. Du, M. Sibila, R. Rapp, X (3872)transport in heavy-ion collisions. Eur. Phys. J. A **57**(4), 122 (2021). https://doi.org/10.1140/epja/s10050-021-00623-4. arXiv:2006.09945 [nucl-th]. [Erratum: Eur.Phys.J.A 57, 314 (2021)]

214. F. Riek, R. Rapp, Selfconsistent Evaluation of Charm and Charmonium in the Quark-Gluon Plasma. New J. Phys. **13**, 045007 (2011). https://doi.org/10.1088/1367-2630/13/4/045007. arXiv:1012.0019 [nucl-th]

215. M. He, R.J. Fries, R. Rapp, Ideal Hydrodynamics for Bulk and Multistrange Hadrons in $\sqrt{s_{NN}}$=200 AGeV Au-Au Collisions. Phys. Rev. C **85**, 044911 (2012). https://doi.org/10.1103/PhysRevC.85.044911. arXiv:1112.5894 [nucl-th]

216. S.Y.F. Liu, R. Rapp, Heavy-light susceptibilities in a strongly coupled quark-gluon plasma. Phys. Rev. C **106**(5), 055201 (2022). https://doi.org/10.1103/PhysRevC.106.055201. arXiv:2111.13620 [hep-ph]

217. A. Andronic et al., Heavy-flavour and quarkonium production in the LHC era: from proton-proton to heavy-ion collisions.
Eur. Phys. J. C **76**(3), 107 (2016). https://doi.org/10.1140/epjc/s10052-015-3819-5. arXiv:1506.03981 [nucl-ex]

218. K. Zhou, N. Xu, Z. Xu, P. Zhuang, Medium effects on charmonium production at ultrarelativistic energies available at the CERN Large Hadron Collider. Phys. Rev. C **89**(5), 054911 (2014). https://doi.org/10.1103/PhysRevC.89.054911. arXiv:1401.5845 [nucl-th]

219. B. Chen, Thermal production of charmonia in Pb-Pb collisions at $\sqrt{s_{NN}}$ = 502 TeV. Chin. Phys. C **43**(12), 124101 (2019). https://doi.org/10.1088/1674-1137/43/12/124101. arXiv:1811.11393 [nucl-th]

220. B. Chen, T. Guo, Y. Liu, P. Zhuang, Cold and Hot Nuclear Matter Effects on Charmonium Production in p+Pb Collisions at LHC Energy. Phys. Lett. B **765**, 323-327 (2017). https://doi.org/10.1016/j.physletb.2016.12.021. arXiv:1607.07927 [nucl-th]

221. J. Zhao, P. Zhuang, Effects of cold and hot nuclear matter on $J/\psi$ production at energies selected for the beam energy scan at the BNL Relativistic Heavy Ion Collider. Phys. Rev. C **105**(6), 064907 (2022). https://doi.org/10.1103/PhysRevC.105.064907

222. J. Zhao, K. Zhou, S. Chen, P. Zhuang, Heavy flavors under extreme conditions in high energy nuclear collisions. Prog. Part. Nucl. Phys. **114**, 103801 (2020). https://doi.org/10.1016/j.ppnp.2020.103801. arXiv:2005.08277 [nucl-th]

223. B. Chen, L. Jiang, X.-H. Liu, Y. Liu, J. Zhao, X(3872) production in relativistic heavy-ion collisions. Phys. Rev. C **105**(5), 054901 (2022). https://doi.org/10.1103/PhysRevC.105.054901. arXiv:2107.00969 [hep-ph]

224. M.E. Peskin, Short Distance Analysis for Heavy Quark Systems. 1. Diagrammatics. Nucl. Phys. B **156**, 365-390 (1979). https://doi.org/10.1016/0550-3213(79)90199-8

225. G. Bhanot, M.E. Peskin, Short Distance Analysis for Heavy Quark Systems. 2. Applications. Nucl. Phys. B **156**, 391-416 (1979). https://doi.org/10.1016/0550-3213(79)90200-1

226. P. Petreczky, Quarkonium in Hot Medium. J. Phys. G **37**, 094009 (2010). https://doi.org/10.1088/0954-3899/37/9/094009. arXiv:1001.5284 [hep-ph]

227. Z.-W. Lin, C.M. Ko, A Model for J / psi absorption in hadronic matter. Phys. Rev. C **62**, 034903 (2000). https://doi.org/10.1103/PhysRevC.62.034903. arXiv:nucl-th/9912046

228. J. Huefner, P.-F. Zhuang, Time structure of anomalous J / psi and psi-prime suppression in nuclear collisions. Phys. Lett. B **559**, 193-200 (2003). https://doi.org/10.1016/S0370-2693(03)00347-2. arXiv:nucl-th/0208004

229. P.-F. Zhuang, X.L. Zhu, Leakage effect on J / psi p(t) distributions in different centrality bins for Pb Pb collisions at E / A = 160 GeV. Phys. Rev. C **67**, 067901 (2003). https://doi.org/10.1103/PhysRevC.67.067901. arXiv:nucl-th/0304019

230. D. Kharzeev, M. Nardi, Hadron production in nuclear collisions at RHIC and high density QCD. Phys. Lett. B **507**, 121-128 (2001). https://doi.org/10.1016/S0370-2693(01)00457-9. arXiv:nucl-th/0012025

231. M. Tanabashi et al., Review of Particle Physics. Phys. Rev. D **98**(3), 030001 (2018). https://doi.org/10.1103/PhysRevD.98.030001

232. D.C. McGlinchey, A.D. Frawley, R. Vogt, Impact parameter dependence of the nuclear modification of $J/\psi$ production in d+Au collisions at $\sqrt{s_{NN}}$ = 200 GeV. Phys. Rev. C **87**(5), 054910 (2013). https://doi.org/10.1103/PhysRevC.87.054910. arXiv:1208.2667 [nucl-th]

233. R. Vogt, Energy dependence of intrinsic charm production: Determining the best energy for observation. Phys. Rev. C **106**(2), 025201 (2022). https://doi.org/10.1103/PhysRevC.106.025201. arXiv:2207.04347 [hep-ph]

234. F. Arleo, R. Kolevatov, S. Peigné, M. Rustamova, Centrality and pT dependence of J/psi suppression in proton-nucleus collisions

from parton energy loss. JHEP **05**, 155 (2013). https://doi.org/10.1007/JHEP05(2013)155. arXiv:1304.0901 [hep-ph]

235. C. Lourenco, R. Vogt, H.K. Woehri, Energy dependence of J/psi absorption in proton-nucleus collisions. JHEP **02**, 014 (2009). https://doi.org/10.1088/1126-6708/2009/02/014. arXiv:0901.3054 [hep-ph]

236. J. Ftacinik, P. Lichard, J. Pisut, An Alternative Mechanism of $J/\psi$ Suppression in Heavy Ion Collisions. Phys. Lett. B **207**, 194-198 (1988). https://doi.org/10.1016/0370-2693(88)91415-3

237. S. Gavin, M. Gyulassy, A. Jackson, Hadronic J/psi Suppression in Ultrarelativistic Nuclear Collisions. Phys. Lett. B **207**, 257-262 (1988). https://doi.org/10.1016/0370-2693(88)90571-0

238. R. Vogt, M. Prakash, P. Koch, T.H. Hansson, $J/\psi$ Interactions With Hot Hadronic Matter. Phys. Lett. B **207**, 263-268 (1988). https://doi.org/10.1016/0370-2693(88)90572-2

239. S. Gavin, R. Vogt, $J/\psi$ Suppression From Hadron - Nucleus to Nucleus-nucleus Collisions. Nucl. Phys. B **345**, 104-124 (1990). https://doi.org/10.1016/0550-3213(90)90610-P

240. Y.-Q. Ma, R. Vogt, Quarkonium Production in an Improved Color Evaporation Model. Phys. Rev. D **94**(11), 114029 (2016). https://doi.org/10.1103/PhysRevD.94.114029. arXiv:1609.06042 [hep-ph]

241. R.L. Thews, M.L. Mangano, Momentum spectra of charmonium produced in a quark-gluon plasma. Phys. Rev. C **73**, 014904 (2006). https://doi.org/10.1103/PhysRevC.73.014904. arXiv:nucl-th/0505055

242. R.E. Nelson, R. Vogt, A.D. Frawley, Narrowing the uncertainty on the total charm cross section and its effect on the $J/\psi$ cross section. Phys. Rev. C **87**(1), 014908 (2013). https://doi.org/10.1103/PhysRevC.87.014908. arXiv:1210.4610 [hep-ph]

243. R. Vogt, Shadowing effects on $J/\psi$ and $\Upsilon$ production at energies available at the CERN Large Hadron Collider. Phys. Rev. C **92**(3), 034909 (2015). https://doi.org/10.1103/PhysRevC.92.034909. arXiv:1507.04418 [hep-ph]

244. V. Cheung, R. Vogt, Production and polarization of prompt $J/\psi$ in the improved color evaporation model using the $k_T$-factorization approach. Phys. Rev. D **98**(11), 114029 (2018). https://doi.org/10.1103/PhysRevD.98.114029. arXiv:1808.02909 [hep-ph]

245. V. Cheung, R. Vogt, Production and polarization of prompt $\Upsilon(nS)$ in the improved color evaporation model using the $k_T$-factorization approach. Phys. Rev. D **99**(3), 034007 (2019). https://doi.org/10.1103/PhysRevD.99.034007. arXiv:1811.11570 [hep-ph]

246. V. Cheung, R. Vogt, Production and polarization of direct $J/\psi$ to $O(\alpha s^3)$ in the improved color evaporation model in collinear factorization. Phys. Rev. D **104**(9), 094026 (2021). https://doi.org/10.1103/PhysRevD.104.094026. arXiv:2102.09118 [hep-ph]

247. V. Cheung, R. Vogt, Polarized Heavy Quarkonium Production in the Color Evaporation Model. Phys. Rev. D **95**(7), 074021 (2017). https://doi.org/10.1103/PhysRevD.95.074021. arXiv:1702.07809 [hep-ph]

248. V. Cheung, R. Vogt, Polarization of prompt $J/\psi$ and $\Upsilon(1S)$ production in the color evaporation model. Phys. Rev. D **96**(5), 054014 (2017). https://doi.org/10.1103/PhysRevD.96.054014. arXiv:1706.07686 [hep-ph]

249. V. Cheung, R. Vogt, Quarkonium polarization in Pb+Pb collisions in the improved color evaporation model. Phys. Rev. C **105**(5), 055202 (2022). https://doi.org/10.1103/PhysRevC.105.055202. arXiv:2203.10154 [hep-ph]

250. N. Brambilla et al., QCD and Strongly Coupled Gauge Theories: Challenges and Perspectives. Eur. Phys. J. C **74**(10), 2981 (2014). https://doi.org/10.1140/epjc/s10052-014-2981-5. arXiv:1404.3723 [hep-ph]

251. Y.-Q. Ma, R. Venugopalan, Comprehensive Description of $J/\psi$ Production in Proton-Proton Collisions at Collider Energies.
Phys. Rev. Lett. 113(19), 192301 (2014). https://doi.org/10.1103/PhysRevLett.113.192301. arXiv:1408.4075 [hep-ph]

252. F. Maltoni et al., Analysis of charmonium production at fixed-target experiments in the NRQCD approach. Phys. Lett. B 638, 202–208 (2006). https://doi.org/10.1016/j.physletb.2006.05.010. arXiv:hep-ph/0601203

253. Y. Feng, J.-P. Lansberg, J.-X. Wang, Energy dependence of direct-quarkonium production in pp collisions from fixed-target to LHC energies: complete one-loop analysis. Eur. Phys. J. C 75(7), 313 (2015). https://doi.org/10.1140/epjc/s10052-015-3527-1. arXiv:1504.00317 [hep-ph]

254. A. Bazavov et al., Chiral crossover in QCD at zero and non-zero chemical potentials. Phys. Lett. B 795, 15–21 (2019). https://doi.org/10.1016/j.physletb.2019.05.013. arXiv:1812.08235 [hep-lat]

255. S. Borsanyi, Z. Fodor, J.N. Guenther, R. Kara, S.D. Katz, P. Parotto, A. Pasztor, C. Ratti, K.K. Szabo, QCD Crossover at Finite Chemical Potential from Lattice Simulations. Phys. Rev. Lett. 125(5), 052001 (2020). https://doi.org/10.1103/PhysRevLett.125.052001. arXiv:2002.02821 [hep-lat]

256. B. Schenke, S. Jeon, C. Gale, (3+1)D hydrodynamic simulation of relativistic heavy-ion collisions. Phys. Rev. C 82, 014903 (2010). https://doi.org/10.1103/PhysRevC.82.014903. arXiv:1004.1408 [hep-ph]

257. T. Song, Y. Park, S.H. Lee, C.-Y. Wong, The Thermal width of heavy quarkonia moving in quark gluon plasma. Phys. Lett. B 659, 621–627 (2008). https://doi.org/10.1016/j.physletb.2007.11.084. arXiv:0709.0794 [hep-ph]