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# IWGSC data repository news and overview of the plans for the WheatIS

Michael Alaux

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## To cite this version:

Michael Alaux. IWGSC data repository news and overview of the plans for the WheatIS. PAG XXX - Plant and Animal Genome Conference, Jan 2023, San Diego, United States. hal-04537219

HAL Id: hal-04537219

https://hal.inrae.fr/hal-04537219

Submitted on 8 Apr 2024

HAL is a multi-disciplinary open access
archive for the deposit and dissemination of sci-
entific research documents, whether they are pub-
lished or not. The documents may come from
teaching and research institutions in France or
abroad, or from public or private research centers.

L'archive ouverte pluridisciplinaire HAL, est
destinée au dépôt et à la diffusion de documents
scientifiques de niveau recherche, publiés ou non,
émanant des établissements d'enseignement et de
recherche français ou étrangers, des laboratoires
publics ou privés.

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Distributed under a Creative Commons Attribution 4.0 International License
# IWGSC data repository news and overview of the plans for the WheatIS

Michael Alaux

<figure><img src="image_1.png" /></figure>

## To cite this version:

Michael Alaux. IWGSC data repository news and overview of the plans for the WheatIS. PAG XXX - Plant and Animal Genome Conference, Jan 2023, San Diego, United States. [https://hal.inrae.fr/hal-04537219](https://hal.inrae.fr/hal-04537219v1)

HAL Id: hal-04537219

https://hal.inrae.fr/hal-04537219v1

Submitted on 8 Apr 2024

HAL is a multi-disciplinary open access archive for the deposit and dissemination of scientific research documents, whether they are published or not. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers.

L'archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d'enseignement et de recherche français ou étrangers, des laboratoires publics ou privés.

<figure><img src="image_2.png" /></figure>

Distributed under a Creative Commons Attribution 4.0 International License
# IWGSC Data Repository news and WheatIS overview

## IWGSC Business Meeting

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# IWGSC Data Repository news and WheatIS overview

## IWGSC Business Meeting

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> IWGSC Data Repository news

February 2022:

* Data from the reference sequence of the Turkish elite cultivar Sonmez are now available to download (IWGSC news).

April 2021:

* **IWGSC RefSeq v2.1 assembly** and annotation is available in open access to download, BLAST and display in a browser (IWGSC announcement).

July 2020:

* Chromatin accessibility data are available in open access (E. Akhunov).

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> IWGSC Data Repository news

February 2022:

* Data from the reference sequence of the Turkish elite cultivar Sonmez are now available to download (IWGSC news).

April 2021:

* **IWGSC RefSeq v2.1** assembly and annotation is available in open access to download, BLAST and display in a browser (IWGSC announcement).

July 2020:

* Chromatin accessibility data are available in open access (E. Akhunov).

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> IWGSC Data Repository news

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> IWGSC Data Repository news

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IWGSC Data Repository metrics

<table><thead><tr><th>IWGSC Data Repository resources</th><th>2020</th><th>2021</th><th>2022</th></tr></thead><tbody><tr><td>Data Repository website visits</td><td>34525</td><td>30249</td><td>29160</td></tr><tr><td>Downloads</td><td>34236</td><td>36309</td><td>25240</td></tr><tr><td>Genome browsers visits</td><td>82834</td><td>31261</td><td>34171</td></tr><tr><td>BLAST searches</td><td>82968</td><td>94920</td><td>54029</td></tr></tbody></table>

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> IWGSC Data Repository metrics

<table><thead><tr><th>IWGSC Data Repository resources</th><th>2020</th><th>2021</th><th>2022</th></tr></thead><tbody><tr><td>Data Repository website visits</td><td>34525</td><td>30249</td><td>29160</td></tr><tr><td>Downloads</td><td>34236</td><td>36309</td><td>25240</td></tr><tr><td>Genome browsers visits</td><td>82834</td><td>31261</td><td>34171</td></tr><tr><td>BLAST searches</td><td>82968</td><td>94920</td><td>54029</td></tr></tbody></table>

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> WheatIS news

* New version of the WheatIS Data Discovey tool

* Ontologies

* BrAPI sources

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> WheatIS news

* New version of the WheatIS Data Discovey tool

* Ontologies

* BrAPI sources

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> WheatIS news

* Short demo

https://urgi.versailles.inrae.fr/wheatis/

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> WheatIS news

* Short demo

https://urgi.versailles.inrae.fr/wheatis/

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INRAO

IWGSC Business Meeting
Michael Alaux

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> WheatIS plan

* Data updates of existing sources

* Ensembl, GrainGenes, Gramene

* Addition of new IWGSC sources

* Apollo from Australia

* Promotion of the WheatIS Data Discovey tool

* Talks

* Videos

* Workshop to support the use of the wheat gene nomenclature and guidelines

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> WheatIS plan

* Data updates of existing sources

* Ensembl, GrainGenes, Gramene

* Addition of new IWGSC sources

* Apollo from Australia

* Promotion of the WheatIS Data Discovey tool

* Talks

* Videos

* Workshop to support the use of the wheat gene nomenclature and guidelines

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