# BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme

Karine Massau, Byte-Sea Consortium, Erwan Corre

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## To cite this version:

Karine Massau, Byte-Sea Consortium, Erwan Corre. BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme. JOBIM 2024 - Journées ouvertes en biologie, informatique et mathématiques, Jun 2024, Toulouse, France. pp.1-1, 2024. hal-04693601

HAL Id: hal-04693601

https://hal.science/hal-04693601v1

Submitted on 10 Sep 2024

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# BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme

Karine MASSAU<fnref n="1" />, BYTE-Sea consortium<fnref n="2" /> and Erwan CORRE<fnref n="1" />,<fnref n="3" />

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Priority research programs
and equipment (PEPR)

Funded by the France 2030 framework
program. Administered by ANR

Led by CNRS and CEA

Associated to the international ERGA
and EBP projects

5 academic partners:
Ifremer, MNHN, Aix-Marseille
University, Paris Sciences & Lettres and
Sorbonne University.

3 French infrastructures:
France génomique, IFB, EMBRC-Fr

## ATLASea Programme - an atlas of marine genomes
genome sequences of 4500 marine organisms along the French coast

### WHEEL-Sea (CNRS):

improve and support teaching and training in the field of biodiversity.

**DIVE-Sea (MNHN):**
sampling expeditions
along the French
mainland and overseas
coasts and interactions
with marine stations.
Banking of samples.

**SEQ-Sea (CEA):**
preparation of high
quality DNA,
sequencing, assembly
and annotation of
genomes at
Genoscope.

**BYTE-Sea (IFB):**
IT infrastructure for
data storage,
integration, display and
sharing. Functional and
expert annotation and
comparative genomic

### Calls for expressions of interest (2026)

Study of metabolic
pathways

Study of
ecosystems subject
to invasions

## BYTE-Sea Work packages (WP)

### WP1: Infrastructure for storage, computing and software

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### WP2: ATLASea database

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### WP4: Automatic functional annotation and expert annotation

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### WP3: ATLASea portals for data and analysis tools

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### WP5: Comparative Marine Genomics

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<footnote n="1">¹ ABiMS bioinformatic platform, FR2424, CNRS/Sorbonne Université, Station Biologique de Roscoff (SBR), 29680, Roscoff, France</footnote>

<footnote n="2">² BYTE-Sea Consortium : https://gitlab.com/pepr-atlasea/byte-sea_consortium</footnote>

<footnote n="3">³ IFB - Institut Français de Bioinformatique, CNRS UAR 3601, France</footnote>