Di Martino, Adriana, Chao-Gan Yan, Qingyang Li, Erin Denio, Francisco X Castellanos, Kaat Alaerts, Jeffrey S Anderson, Michal Assaf, Susan Y Bookheimer, Mirella Dapretto, et al. (2014). "The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism". In: *Molecular psychiatry* 19.6, pp. 659-667.

Eklund, Anders, Hans Knutsson, and Thomas E. Nichols (2018). "Cluster Failure Revisited: Impact of First Level Design and Data Quality on Cluster False Positive Rates". en. In: *bioRxiv*, p. 296798. DOI: 10.1101/296798. URL: https://www.biorxiv.org/content/10.1101/296798v2 (visited on 01/24/2019).

Eklund, Anders, Thomas E. Nichols, and Hans Knutsson (2016a). "Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates". en. In: *Proceedings of the National Academy of Sciences* 113.28, pp. 7900-7905. ISSN: 0027-8424, 1091-6490. DOI: 10.1073/pnas.1602413113. URL: http://www.pnas.org/lookup/doi/10.1073/pnas.1602413113 (visited on 01/31/2019).

- (2016b). "Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates". en. In: *Proceedings of the National Academy of Sciences* 113.28. Number: 28, pp. 7900-7905. ISSN: 0027-8424, 1091-6490. DOI: 10.1073/pnas.1602413113. URL: http://www.pnas.org/lookup/doi/10.1073/pnas.1602413113 (visited on 02/02/2021).

Esteban, Oscar, Christopher J. Markiewicz, Ross W. Blair, Craig A. Moodie, A. Ilkay Isik, Asier Erramuzpe, James D. Kent, Mathias Goncalves, Elizabeth DuPre, Madeleine Snyder, Hiroyuki Oya, Satrajit S. Ghosh, Jessey Wright, Joke Durnez, Russell A. Poldrack, and Krzysztof J. Gorgolewski (2019). "fMRIPrep: a robust preprocessing pipeline for functional MRI". en. In: *Nature Methods* 16.1, pp. 111-116. ISSN: 1548-7091, 1548-7105. DOI: 10.1038/s41592-018-0235-4. URL: http://www.nature.com/articles/s41592-018-0235-4 (visited on 01/31/2019).

Finn, Emily S., Xilin Shen, Dustin Scheinost, Monica D. Rosenberg, Jessica Huang, Marvin M. Chun, Xenophon Papademetris, and R. Todd Constable (2015). "Functional connectome fingerprinting: identifying individuals using patterns of brain connectivity". en. In: *Nature Neuroscience* 18.11. Number: 11 Publisher: Nature Publishing Group, pp. 1664-1671. ISSN: 1546-1726. DOI: 10.1038/nn.4135. URL: https://www.nature.com/articles/nn.4135 (visited on 12/02/2023).

Fisher, R.A. (1932). *Statistical Methods for Research Workers*. Oliver and Boyd, Edinburgh.

Flandin, Guillaume and Karl J Friston (2019). "Analysis of family-wise error rates in statistical parametric mapping using random field theory". In: *Human brain mapping* 40.7, pp. 2052-2054.

Ganz, Melanie, Sune H Holm, and Aasa Feragen (2021). "Assessing Bias in Medical AI". en. In.

Gau, Rémi, Stephanie Noble, Katja Heuer, Katherine L. Bottenhorn, Isil P. Bilgin, Yu-Fang Yang, Julia M. Huntenburg, Johanna M. M. Bayer, Richard A. I. Bethlehem, Shawn A. Rhoads, Christoph Vogelbacher, Valentina Borghesani, Elizabeth Levitis, Hao-Ting Wang, Sofie Van Den Bossche, Xenia Kobeleva, Jon Haitz Legarreta, Samuel Guay, Selim Melvin Atay, Gael P. Varoquaux, Dorien C. Huijser, Malin S. Sandström, Peer Herholz, Samuel A. Nastase, AmanPreet Badhwar, Guillaume Dumas, Simon Schwab, Stefano Moia, Michael Dayan, Yasmine Bassil, Paula P. Brooks, Matteo Mancini, James M. Shine, David O'Connor, Xihe Xie, Davide Poggiali, Patrick Friedrich, Anibal S. Heinsfeld, Lydia Riedl, Roberto Toro, César Caballero-Gaudes, Anders Eklund, Kelly G. Garner, Christopher R. Nolan, Damion V. Demeter, Fernando A. Barrios, Junaid S. Merchant, Elizabeth A. McDevitt, Robert Oostenveld, R. Cameron Craddock, Ariel Rokem, Andrew Doyle, Satrajit S. Ghosh, Aki Nikolaidis, Olivia W. Stanley, Eneko Uruñuela, and Brainhack Community
(2021). "Brainhack: Developing a culture of open, inclusive, community-driven neuroscience". eng. In: *Neuron* 109.11, pp. 1769-1775. ISSN: 1097-4199. DOI: 10.1016/j.neuron.2021.04.001.

Germani, Elodie, Elisa Fromont, and Camille Maumet (2022). *On the benefits of self-taught learning for brain decoding*. en. URL: https://hal.inria.fr/hal-03769993 (visited on 11/11/2022).

Germani, Elodie, Elisa Fromont, Pierre Maurel, and Camille Maumet (2023). "The HCP multi-pipeline dataset: an opportunity to investigate analytical variability in fMRI data analysis". working paper or preprint.

Glatard, Tristan, Lindsay B. Lewis, Rafael Ferreira da Silva, Reza Adalat, Natacha Beck, Claude Lepage, Pierre Rioux, Marc-Etienne Rousseau, Tarek Sherif, Ewa Deelman, Najmeh Khalili-Mahani, and Alan C. Evans (2015). "Reproducibility of neuroimaging analyses across operating systems". en. In: *Frontiers in Neuroinformatics* 9. ISSN: 1662-5196. DOI: 10.3389/fninf.2015.00012. URL: http://journal.frontiersin.org/article/10.3389/fninf.2015.00012/abstract (visited on 02/06/2021).

Goble, Carole (2016). "Keynote: What is Reproducibility? The R* Brouhaha". en-us. In: DOI: osf.io/g7sx4.

Gorgolewski, Krzysztof, Daniel Margulies, and Michael Milham (2013). "Making Data Sharing Count: A Publication-Based Solution". In: *Frontiers in Neuroscience* 7. ISSN: 1662-453X. URL: https://www.frontiersin.org/articles/10.3389/fnins.2013.00009 (visited on 11/27/2023).

Gorgolewski, Krzysztof J., Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M Mallar Chakravarty, Nathan W Churchill, Alexander Li Cohen, R Cameron Craddock, Gabriel A Devenyi, et al. (2017). "BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods". In: *PLoS computational biology* 13.3, e1005209.

Gorgolewski, Krzysztof J., Tibor Auer, Vince D. Calhoun, R. Cameron Craddock, Samir Das, Eugene P. Duff, Guillaume Flandin, Satrajit S. Ghosh, Tristan Glatard, Yaroslav O. Halchenko, Daniel A. Handwerker, Michael Hanke, David Keator, Xiangrui Li, Zachary Michael, Camille Maumet, B. Nolan Nichols, Thomas E. Nichols, John Pellman, Jean-Baptiste Poline, Ariel Rokem, Gunnar Schaefer, Vanessa Sochat, William Triplett, Jessica A. Turner, Gaël Varoquaux, and Russell A. Poldrack (2016). "The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments". en. In: *Scientific Data* 3.1. Number: 1 Publisher: Nature Publishing Group, p. 160044. ISSN: 2052-4463. DOI: 10.1038/sdata.2016.44. URL: https://www.nature.com/articles/sdata201644 (visited on 08/11/2020).

Gorgolewski, Krzysztof J., Gael Varoquaux, Gabriel Rivera, Yannick Schwartz, Vanessa V. Sochat, Satrajit S. Ghosh, Camille Maumet, Thomas E. Nichols, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies, and Russell A. Poldrack (2015a). "NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain". In: *NeuroImage* 124.Pt B. Publisher: Elsevier, pp. 1242-1244. DOI: 10.1016/j.neuroimage.2015.04.016. URL: https://www.hal.inserm.fr/inserm-01148969.

Gorgolewski, Krzysztof J., Gael Varoquaux, Gabriel Rivera, Yannick Schwarz, Satrajit S. Ghosh, Camille Maumet, Vanessa V. Sochat, Thomas E. Nichols, Russell A. Poldrack, Jean-Baptiste Poline, Tal Yarkoni, and Daniel S. Margulies (2015b). "NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain". In: *Frontiers*
in *Neuroinformatics* 9.8. Publisher: Frontiers. DOI: 10.3389/fninf.2015.00008. URL: https://www.hal.inserm.fr/inserm-01134573.

Greene, WH William H. (2012). *Econometric analysis*. Vol. 97, p. 1189. ISBN: 9780131395381. DOI: 10.1198/jasa.2002.s458. arXiv: arXiv:1011.1669v3. URL: http://www.mendeley.com/research/econometric-analysis-195/$%5Cbackslash$nhttps://scholar.google.com/scholar?hl=en%7B%5C&%7Dq=econometric+analysis%7B%5C&%7DbtnG=%7B%5C&%7Das%7B%5C_%7Dsdt=1,10%7B%5C&%7Das%7B%5C_%7Dsdtp=%7B%5C#%7D1.

Hoffmann, Sabine, Felix Schönbrodt, Ralf Elsas, Rory Wilson, Ulrich Strasser, and Anne-Laure Boulesteix (2021). "The multiplicity of analysis strategies jeopardizes replicability: lessons learned across disciplines". en. In: *Royal Society Open Science* 8.4, rsos.201925, 201925. ISSN: 2054-5703. DOI: 10.1098/rsos.201925. URL: https://royalsocietypublishing.org/doi/10.1098/rsos.201925 (visited on 08/24/2021).

Hofstra, Bas, Vivek V. Kulkarni, Sebastian Munoz-Najar Galvez, Bryan He, Dan Jurafsky, and Daniel A. McFarland (2020). "The Diversity–Innovation Paradox in Science". en. In: *Proceedings of the National Academy of Sciences* 117.17. ISBN: 9781915378118 Publisher: National Academy of Sciences Section: Social Sciences, pp. 9284–9291. ISSN: 0027-8424, 1091-6490. DOI: 10.1073/pnas.1915378117. URL: https://www.pnas.org/content/117/17/9284 (visited on 06/29/2020).

Holdgraf, Christopher, Stefan Appelhoff, Stephan Bickel, Kristofer Bouchard, Sasha D'Ambrosio, Olivier David, Orrin Devinsky, Benjamin Dichter, Adeen Flinker, Brett L Foster, et al. (2019). "iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology". In: *Scientific data* 6.1, p. 102.

Holmes, A. P., R. C. Blair, G. J.D. Watson, and I. Ford (1996). "Nonparametric Analysis of Statis- tic Images from Functional Mapping Experiments". In: *Journal of Cerebral Blood Flow and Metabolism* 16, pp. 7–22. DOI: 10.1097/00004647.

Jenkinson, Mark, Christian F Beckmann, Timothy EJ Behrens, Mark W Woolrich, and Stephen M Smith (2012). "Fsl". In: *Neuroimage* 62.2, pp. 782–790.

Kabbara, Aya, Nina Forde, Camille Maumet, and Mahmoud Hassan (2023). "Successful reproduction of a large EEG study across software packages". In: *Neuroimage: Reports*. Publisher: Elsevier, pp. 1–37. DOI: 10.1101/2022.08.03.502683. URL: https://www.hal.inserm.fr/inserm-03747289.

Keator, D.B., K. Helmer, J. Steffener, J.A. Turner, T.G.M. Van Erp, S. Gadde, N. Ashish, G.A. Burns, and B.N. Nichols (2013). "Towards structured sharing of raw and derived neuroimaging data across existing resources". en. In: *NeuroImage* 82, pp. 647–661. ISSN: 10538119. DOI: 10.1016/j.neuroimage.2013.05.094. URL: https://linkinghub.elsevier.com/retrieve/pii/S105381191300596X (visited on 06/11/2019).

Kennedy, David N, Christian Haselgrove, Jon Riehl, Nina Preuss, and Robert Buccigrossi (2016). "The NITRC image repository". In: *NeuroImage* 124, pp. 1069–1073.

Kiar, Gregory, Yohan Chatelain, Pablo de Oliveira Castro, Eric Petit, Ariel Rokem, Gaël Varoquaux, Bratislav Misic, Alan C. Evans, and Tristan Glatard (2020). "Numerical Instabilities in Analytical Pipelines Lead to Large and Meaningful Variability in Brain Networks". en. In: *bioRxiv*. Publisher: Cold Spring Harbor Laboratory Section: New Results, p. 2020.10.15.341495. DOI: 10.1101/2020.10.15.341495. URL: https://www.biorxiv.org/content/10.1101/2020.10.15.341495v3 (visited on 11/13/2020).
Knight, Christopher G., Sylvia H. E. Knight, Neil Massey, Tolu Aina, Carl Christensen, Dave J. Frame, Jamie A. Kettleborough, Andrew Martin, Stephen Pascoe, Ben Sanderson, David A. Stainforth, and Myles R. Allen (2007). "Association of parameter, software, and hardware variation with large-scale behavior across 57,000 climate models". In: *Proceedings of the National Academy of Sciences* 104.30. Publisher: Proceedings of the National Academy of Sciences, pp. 12259-12264. DOI: 10.1073/pnas.0608144104. URL: https://www.pnas.org/doi/10.1073/pnas.0608144104 (visited on 03/28/2022).

Larrazabal, Agostina J., Nicolás Nieto, Victoria Peterson, Diego H. Milone, and Enzo Ferrante (2020). "Gender imbalance in medical imaging datasets produces biased classifiers for computer-aided diagnosis". In: *Proceedings of the National Academy of Sciences* 117.23. Publisher: Proceedings of the National Academy of Sciences, pp. 12592-12594. DOI: 10.1073/pnas.1919012117. URL: https://www.pnas.org/doi/full/10.1073/pnas.1919012117 (visited on 11/10/2022).

Longo, Dan L. and Jeffrey M. Drazen (2016). "Data Sharing". In: *New England Journal of Medicine* 374.3. Publisher: Massachusetts Medical Society _eprint_ : https://doi.org/10.1056/NEJMe1516564, pp. 276-277. ISSN: 0028-4793. DOI: 10.1056/NEJMe1516564. URL: https://doi.org/10.1056/NEJMe1516564 (visited on 11/27/2023).

Lundgren, Anders and Upulee Kanewala (2016). "Experiences of testing bioinformatics programs for detecting subtle faults". en. In: *Proceedings of the International Workshop on Software Engineering for Science*. Austin Texas: ACM, pp. 16-22. ISBN: 978-1-4503-4167-7. DOI: 10.1145/2897676.2897678. URL: https://dl.acm.org/doi/10.1145/2897676.2897678 (visited on 09/27/2022).

Markiewicz, Christopher J, Krzysztof J Gorgolewski, Franklin Feingold, Ross Blair, Yaroslav O Halchenko, Eric Miller, Nell Hardcastle, Joe Wexler, Oscar Esteban, Mathias Goncavles, et al. (2021). "The OpenNeuro resource for sharing of neuroscience data". In: *Elife* 10, e71774.

Maumet, Camille, Tibor Auer, Alexander Bowring, Gang Chen, Samir Das, Guillaume Flandin, Satrajit Ghosh, Tristan Glatard, Krzysztof J Gorgolewski, Karl G Helmer, Mark Jenkinson, David B Keator, B. Nolan Nichols, Jean-Baptiste Poline, Richard Reynolds, Vanessa Sochat, Jessica Turner, and Thomas E Nichols (2016). "Sharing brain mapping statistical results with the neuroimaging data model". In: *Scientific Data* 3. Publisher: Nature Publishing Group. DOI: 10.1038/sdata.2016.102. URL: https://www.hal.inserm.fr/inserm-01411025.

Maumet, Camille, Satrajit Ghosh, Yaroslav O. Halchenko, Dorota Jarecka, Nolan B. Nichols, Jean-Baptiste Poline, and Michael Hanke (2019). "The best of both worlds: using semantic web with JSON-LD. An example with NIDM-Results & Datalad". In: *OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping*. Rome, Italy. URL: https://www.hal.inserm.fr/inserm-01972649.

McKiernan, Erin C, Philip E Bourne, C Titus Brown, Stuart Buck, Amye Kenall, Jennifer Lin, Damon McDougall, Brian A Nosek, Karthik Ram, Courtney K Soderberg, Jeffrey R Spies, Kaitlin Thaney, Andrew Updegrove, Kara H Woo, and Tal Yarkoni (2016). "How open science helps researchers succeed". In: *eLife* 5. Ed. by Peter Rodgers. Publisher: eLife Sciences Publications, Ltd, e16800. ISSN: 2050-084X. DOI: 10.7554/eLife.16800. URL: https://doi.org/10.7554/eLife.16800 (visited on 11/27/2023).
Menuet, Romuald, Raphael Meudec, Jérôme Dockès, Gael Varoquaux, and Bertrand Thirion (2022). "Comprehensive decoding mental processes from Web repositories of functional brain images". In: *Scientific Reports* 12.1, p. 7050.

Milham, Michael P., R. Cameron Craddock, Jake J. Son, Michael Fleischmann, Jon Clucas, Helen Xu, Bonhwang Koo, Anirudh Krishnakumar, Bharat B. Biswal, F. Xavier Castellanos, Stan Colcombe, Adriana Di Martino, Xi-Nian Zuo, and Arno Klein (2018). "Assessment of the impact of shared brain imaging data on the scientific literature". en. In: *Nature Communications* 9.1, pp. 1-7. ISSN: 2041-1723. DOI: 10.1038/s41467-018-04976-1. URL: https://www.nature.com/articles/s41467-018-04976-1 (visited on 12/16/2019).

Miller, Karla L., Fidel Alfaro-Almagro, Neal K. Bangerter, David L. Thomas, Essa Yacoub, Junqian Xu, Andreas J. Bartsch, Saad Jbabdi, Stamatios N. Sotiropoulos, Jesper L. R. Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Thomas W. Okell, Peter Weale, Iulius Dragonu, Steve Garratt, Sarah Hudson, Rory Collins, Mark Jenkinson, Paul M. Matthews, and Stephen M. Smith (2016). "Multimodal population brain imaging in the UK Biobank prospective epidemiological study". en. In: *Nature Neuroscience* 19.11, pp. 1523-1536. ISSN: 1546-1726. DOI: 10.1038/nn.4393. URL: https://www.nature.com/articles/nn.4393 (visited on 11/08/2018).

Moran, Joseph M, Eshin Jolly, and Jason P Mitchell (2012). "Social-cognitive deficits in normal aging". In: *Journal of neuroscience* 32.16, pp. 5553-5561.

Mumford, J. A. and T. E. Nichols (2009a). "Simple group fMRI modeling and inference." In: *NeuroImage* 47.4, pp. 1469-75. ISSN: 1095-9572. DOI: 10.1016/j.neuroimage.2009.05.034.

Mumford, Jeanette A. and Thomas Nichols (2009b). "Simple group fMRI modeling and inference". en. In: *NeuroImage* 47.4, pp. 1469-1475. ISSN: 10538119. DOI: 10.1016/j.neuroimage.2009.05.034. URL: https://linkinghub.elsevier.com/retrieve/pii/S1053811909005473 (visited on 03/25/2020).

Nichols, T. E. and A. P Holmes (2002). "Nonparametric permutation tests for functional neuroimaging: a primer with examples." In: *Human brain mapping* 15.1, pp. 1-25. ISSN: 1065-9471.

Nichols, Thomas (2012). *SPM plot units*. en. URL: https://blog.nisox.org/2012/07/31/spm-plot-units/ (visited on 12/11/2023).

Nichols, Thomas E, Samir Das, Simon B Eickhoff, Alan C Evans, Tristan Glatard, Michael Hanke, Nikolaus Kriegeskorte, Michael P Milham, Russell A Poldrack, Jean-baptiste Poline, Erika Proal, Bertrand Thirion, David C Van Essen, Tonya White, and B T Thomas Yeo (2017a). "Best practices in data analysis and sharing in neuroimaging using MRI". In: *Nature Neuroscience* 20.3, pp. 299-303. ISSN: 1097-6256. DOI: 10.1038/nn.4500. arXiv: arXiv: 1011.1669v3. URL: http://www.nature.com/doifinder/10.1038/nn.4500.

Nichols, Thomas E., Samir Das, Simon B. Eickhoff, Alan C. Evans, Tristan Glatard, Michael Hanke, Nikolaus Kriegeskorte, Michael P. Milham, Russell A. Poldrack, Jean-Baptiste Poline, Erika Proal, Bertrand Thirion, David C. Van Essen, Tonya White, and B. T. Thomas Yeo (2017b). "Best practices in data analysis and sharing in neuroimaging using MRI". en. In: *Nature Neuroscience* 20.3. Number: 3 Publisher: Nature Publishing Group, pp. 299-303. ISSN: 1546-1726. DOI: 10.1038/nn.4500. URL: https://www.nature.com/articles/nn.4500 (visited on 10/11/2022).

Niso, Guiomar, Krzysztof J Gorgolewski, Elizabeth Bock, Teon L Brooks, Guillaume Flandin, Alexandre Gramfort, Richard N Henson, Mainak Jas, Vladimir Litvak, Jeremy T Moreau, et al.
(2018). "MEG-BIDS, the brain imaging data structure extended to magnetoencephalography". In: *Scientific data* 5.1, pp. 1–5.

Nooner, Kate Brody, Stanley J Colcombe, Russell H Tobe, Maarten Mennes, Melissa M Benedict, Alexis L Moreno, Laura J Panek, Shaquanna Brown, Stephen T Zavitz, Qingyang Li, et al. (2012). "The NKI-Rockland sample: a model for accelerating the pace of discovery science in psychiatry". In: *Frontiers in neuroscience* 6, p. 152.

Norgaard, Martin, Granville J Matheson, Hanne D Hansen, Adam Thomas, Graham Searle, Gaia Rizzo, Mattia Veronese, Alessio Giacomel, Maqsood Yaqub, Matteo Tonietto, et al. (2022). "PET-BIDS, an extension to the brain imaging data structure for positron emission tomography". In: *Scientific data* 9.1, p. 65.

Obungoloch, Johnes, Joshua R Harper, Steven Consevage, Igor M Savukov, Thomas Neuberger, Srinivas Tadigadapa, and Steven J Schiff (2018). "Design of a sustainable prepolarizing magnetic resonance imaging system for infant hydrocephalus". In: *Magnetic Resonance Materials in Physics, Biology and Medicine* 31, pp. 665–676.

Open Brain Consent working group (2021). "The Open Brain Consent : Informing research participants and obtaining consent to share brain imaging data". In: *Human Brain Mapping* 42.7, pp. 1945–1951. DOI: 10.1002/hbm.25351.

Open Science Collaboration (2015). "Estimating the reproducibility of psychological science". In: *Science* 349.6251. Publisher: American Association for the Advancement of Science, aac4716. DOI: 10.1126/science.aac4716. URL: https://www.science.org/doi/10.1126/science.aac4716 (visited on 04/05/2023).

Padmanabhan, Aarthi, Charles F Geier, Sarah J Ordaz, Theresa Teslovich, and Beatriz Luna (2011). "Developmental changes in brain function underlying the influence of reward processing on inhibitory control". In: *Developmental cognitive neuroscience* 1.4, pp. 517–529.

Pauli, Ruth, Alexander Bowring, Richard Reynolds, Gang Chen, Thomas E Nichols, and Camille Maumet (2016). "Exploring fMRI results space: 31 variants of an fMRI analysis in AFNI, FSL, and SPM". In: *Frontiers in neuroinformatics* 10, p. 24.

Penny, William D, Karl J Friston, John T Ashburner, Stefan J Kiebel, and Thomas E Nichols (2011). *Statistical parametric mapping: the analysis of functional brain images*. Elsevier.

Pereira, Juliana Alves, Mathieu Acher, Hugo Martin, Jean-Marc Jézéquel, Goetz Botterweck, and Anthony Ventresque (2021). "Learning software configuration spaces: A systematic literature review". In: *Journal of Systems and Software* 182, p. 111044.

Perkel, Jeffrey M. (2020). "Challenge to scientists: does your ten-year-old code still run?" en. In: *Nature* 584.7822. Bandiera_abtest: a Cg_type: Technology Feature Number: 7822 Publisher: Nature Publishing Group Subject_term: Computational biology and bioinformatics, Computer science, Research data, Software, pp. 656–658. DOI: 10.1038/d41586-020-02462-7. URL: https://www.nature.com/articles/d41586-020-02462-7 (visited on 11/28/2023).

Pernet, Cyril (2014). "Misconceptions in the use of the General Linear Model applied to functional MRI: a tutorial for junior neuro-imagers". In: *Frontiers in Neuroscience* 8. ISSN: 1662-453X. URL: https://www.frontiersin.org/articles/10.3389/fnins.2014.00001 (visited on 12/11/2023).

Pernet, Cyril, Marta I Garrido, Alexandre Gramfort, Natasha Maurits, Christoph M Michel, Elizabeth Pang, Riitta Salmelin, Jan Mathijs Schoffelen, Pedro A Valdes-Sosa, and Aina Puce (2020).
"Issues and recommendations from the OHBM COBIDAS MEEG committee for reproducible EEG and MEG research". In: *Nature neuroscience* 23.12, pp. 1473-1483.

Pernet, Cyril R, Stefan Appelhoff, Krzysztof J Gorgolewski, Guillaume Flandin, Christophe Phillips, Arnaud Delorme, and Robert Oostenveld (2019). "EEG-BIDS, an extension to the brain imaging data structure for electroencephalography". In: *Scientific data* 6.1, p. 103.

Pinho, Ana Lui sa, Alexis Amadon, Torsten Ruest, Murielle Fabre, Elvis Dohmatob, Isabelle Denghien, Chantal Ginisty, Séverine Becuwe-Desmidt, Séverine Roger, Laurence Laurier, et al. (2018). "Individual Brain Charting, a high-resolution fMRI dataset for cognitive mapping". In: *Scientific data* 5.1, pp. 1-15.

Piwowar, Heather A and Todd J Vision (2013). "Data reuse and the open data citation advantage". In: *PeerJ* 1, e175.

Poldrack, Russell A, Deanna M Barch, Jason Mitchell, Tor Wager, Anthony D Wagner, Joseph T Devlin, Chad Cumba, Oluwasanmi Koyejo, and Michael Milham (2013a). "Toward open sharing of task-based fMRI data: the OpenfMRI project". In: *Frontiers in neuroinformatics* 7, p. 12.

Poldrack, Russell A., Deanna M. Barch, Jason P. Mitchell, Tor D. Wager, Anthony D. Wagner, Joseph T. Devlin, Chad Cumba, Oluwasanmi Koyejo, and Michael P. Milham (2013b). "Toward open sharing of task-based fMRI data: the OpenfMRI project". eng. In: *Frontiers in Neuroinformatics* 7, p. 12. ISSN: 1662-5196. DOI: 10.3389/fninf.2013.00012.

Poldrack, Russell A., Timothy O. Laumann, Oluwasanmi Koyejo, Brenda Gregory, Ashleigh Hover, Mei-Yen Chen, Krzysztof J. Gorgolewski, Jeffrey Luci, Sung Jun Joo, Ryan L. Boyd, Scott Hunicke-Smith, Zack Booth Simpson, Thomas Caven, Vanessa Sochat, James M. Shine, Evan Gordon, Abraham Z. Snyder, Babatunde Adeyemo, Steven E. Petersen, David C. Glahn, D. Reese Mckay, Joanne E. Curran, Harald H. H. Göring, Melanie A. Carless, John Blangero, Robert Dougherty, Alexander Leemans, Daniel A. Handwerker, Laurie Frick, Edward M. Marcotte, and Jeanette A. Mumford (2015). "Long-term neural and physiological phenotyping of a single human". In: *Nature Communications* 6, p. 8885. URL: https://doi.org/10.1038/ncomms9885.

Poline, Jean-Baptiste, Janis L. Breeze, Satrajit Ghosh, Krzysztof Gorgolewski, Yaroslav O. Halchenko, Michael Hanke, Christian Haselgrove, Karl G. Helmer, David B. Keator, Daniel S. Marcus, Russell A. Poldrack, Yannick Schwartz, John Ashburner, and David N. Kennedy (2012). "Data sharing in neuroimaging research". In: *Frontiers in Neuroinformatics* 6. ISSN: 1662-5196. DOI: 10.3389/fninf.2012.00009. URL: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3319918/ (visited on 11/08/2018).

Queder, Nazek, Vivian B Tien, Sanu Ann Abraham, Sebastian Georg Wenzel Urchs, Karl G Helmer, Derek Chaplin, Theo GM van Erp, David N Kennedy, Jean-Baptiste Poline, Jeffrey S Grethe, et al. (2023). "NIDM-Terms: community-based terminology management for improved neuroimaging dataset descriptions and query". In: *Frontiers in Neuroinformatics* 17.

Rae, Charlotte L., Martin Farley, Kate J. Jeffery, and Anne E. Urai (2022). "Climate crisis and ecological emergency: Why they concern (neuro)scientists, and what we can do". en. In: *Brain and Neuroscience Advances* 6. Publisher: SAGE Publications Ltd STM, p. 23982128221075430. ISSN: 2398-2128. DOI: 10.1177/23982128221075430. URL: https://doi.org/10.1177/23982128221075430 (visited on 11/27/2023).
*Research Parasite Award* (2023). en. Page Version ID: 1184064738. URL: https://en.wikipedia.org/w/index.php?title=Research_Parasite_Award&oldid=1184064738 (visited on 11/27/2023).

Ricci Lara, María Agustina, Rodrigo Echeveste, and Enzo Ferrante (2022). "Addressing fairness in artificial intelligence for medical imaging". en. In: *Nature Communications* 13.1, p. 4581. ISSN: 2041-1723. DOI: 10.1038/s41467-022-32186-3. URL: https://www.nature.com/articles/s41467-022-32186-3 (visited on 08/22/2022).

Rolland, Xavier, Pierre Maurel, and Camille Maumet (2022). "Towards efficient fmri data re-use: can we run between-group analyses with datasets processed differently with spm ?" In: *ISBI 2022 - IEEE International Symposium on Biomedical Imaging*. Calcutta, India: IEEE, pp. 1-4. URL: https://hal.archives-ouvertes.fr/hal-03607384 (visited on 11/11/2022).

Salimi-Khorshidi, Gholamreza, Stephen M Smith, John R Keltner, Tor D Wager, and Thomas E Nichols (2009). "Meta-analysis of neuroimaging data: a comparison of image-based and coordinate-based pooling of studies". In: *Neuroimage* 45.3, pp. 810-823.

Schonberg, Tom, Craig R Fox, Jeanette A Mumford, Eliza Congdon, Christopher Trepel, and Russell A Poldrack (2012). "Decreasing ventromedial prefrontal cortex activity during sequential risk-taking: an fMRI investigation of the balloon analog risk task". In: *Frontiers in neuroscience* 6, p. 80.

Silberzahn, R, E L Uhlmann, D P Martin, P Anselmi, F Aust, E Awtrey, Š Bahník, F Bai, C Bannard, E Bonnier, R Carlsson, F Cheung, G Christensen, R Clay, M A Craig, A Dalla Rosa, L Dam, M H Evans, I Flores Cervantes, N Fong, M Gamez-Djokic, A Glenz, S Gordon-McKeon, T J Heaton, K Hederos, M Heene, A J Hofelich Mohr, F Högden, K Hui, M Johannesson, J Kalodimos, E Kaszubowski, D M Kennedy, R Lei, T A Lindsay, S Liverani, C R Madan, D Molden, E Molleman, R D Morey, L B Mulder, B R Nijstad, N G Pope, B Pope, J M Prenoveau, F Rink, E Robusto, H Roderique, A Sandberg, E Schlüter, F D Schönbrodt, M F Sherman, S A Sommer, K Sotak, S Spain, C Spörlein, T Stafford, L Stefanutti, S Tauber, J Ullrich, and M Vianello (2018). "Many Analysts, One Data Set: Making Transparent How Variations in Analytic Choices Affect Results". en. In: *PSYCHOLOGICAL SCIENCE*, p. 21.

Simmons, Joseph P., Leif D. Nelson, and Uri Simonsohn (2011). "False-positive psychology: undisclosed flexibility in data collection and analysis allows presenting anything as significant". eng. In: *Psychological Science* 22.11, pp. 1359-1366. ISSN: 1467-9280. DOI: 10.1177/0956797611417632.

Simonsohn, Uri, Joseph P. Simmons, and Leif D. Nelson (2020). "Specification curve analysis". en. In: *Nature Human Behaviour* 4.11, pp. 1208-1214. ISSN: 2397-3374. DOI: 10.1038/s41562-020-0912-z. URL: http://www.nature.com/articles/s41562-020-0912-z (visited on 01/04/2021).

Steegen, Sara, Francis Tuerlinckx, Andrew Gelman, and Wolf Vanpaemel (2016). "Increasing Transparency Through a Multiverse Analysis". en. In: *Perspectives on Psychological Science* 11.5, pp. 702-712. ISSN: 1745-6916, 1745-6924. DOI: 10.1177/1745691616658637. URL: http://journals.sagepub.com/doi/10.1177/1745691616658637 (visited on 11/06/2020).

Stouffer, S., L. DeVinney, and E. Suchmen (1949). *The American Soldier: Adjustment During Army Life*. Vol. 1. Princeton University Press, Princeton, NJ.

Strother, Stephen, Stephen La Conte, Lars Kai Hansen, Jon Anderson, Jin Zhang, Sujit Pulapura, and David Rottenberg (2004). "Optimizing the fMRI data-processing pipeline using prediction and reproducibility performance metrics: I. A preliminary group analysis". en. In: *NeuroImage*. Math-
ematics in Brain Imaging 23, S196-S207. ISSN: 1053-8119. DOI: 10.1016/j.neuroimage.2004.07.022. URL: https://www.sciencedirect.com/science/article/pii/S1053811904003945 (visited on 10/14/2022).

Tom, Sabrina M, Craig R Fox, Christopher Trepel, and Russell A Poldrack (2007). "The neural basis of loss aversion in decision-making under risk". In: *Science* 315.5811, pp. 515-518.

Turing Way, The, Becky Arnold, Louise Bowler, Sarah Gibson, Patricia Herterich, Rosie Higman, Anna Krystalli, Alexander Morley, Martin O'Reilly, and Kirstie Whitaker (2019). "The Turing Way: A Handbook for Reproducible Data Science". In: *Zenodo*. ADS Bibcode: 2019zndo...3233986W. DOI: 10.5281/zenodo.3233986. URL: https://ui.adsabs.harvard.edu/abs/2019zndo...3233986W (visited on 11/28/2023).

UNESCO (2021). *UNESCO Recommendation on Open Science*. Tech. rep. UNESCO. DOI: 10.54677/MNMH8546. URL: https://unesdoc.unesco.org/ark:/48223/pf0000379949 (visited on 12/02/2023).

Van Essen, David C., Stephen M. Smith, Deanna M. Barch, Timothy E. J. Behrens, Essa Yacoub, Kamil Ugurbil, and WU-Minn HCP Consortium (2013). "The WU-Minn Human Connectome Project: an overview". eng. In: *NeuroImage* 80, pp. 62-79. ISSN: 1095-9572. DOI: 10.1016/j.neuroimage.2013.05.041.

Van Horn, John Darrell and Michael S. Gazzaniga (2013). "Why share data? Lessons learned from the fMRIDC". In: *NeuroImage* 82, pp. 677-682. ISSN: 1053-8119. DOI: 10.1016/j.neuroimage.2012.11.010. URL: https://www.sciencedirect.com/science/article/pii/S1053811912011068 (visited on 10/24/2023).

Varoquaux, Gaël, Yannick Schwartz, Russell A. Poldrack, Baptiste Gauthier, Danilo Bzdok, Jean-Baptiste Poline, and Bertrand Thirion (2018). "Atlases of cognition with large-scale human brain mapping". en. In: *PLOS Computational Biology* 14.11. Ed. by Jörn Diedrichsen, e1006565. ISSN: 1553-7358. DOI: 10.1371/journal.pcbi.1006565. URL: https://dx.plos.org/10.1371/journal.pcbi.1006565 (visited on 10/25/2023).

Whitaker, Kirstie and Olivia Guest (2020). "#bropenscience is broken science". en. In: p. 4.

White, Tonya, Elisabet Blok, and Vince D. Calhoun (2022). "Data sharing and privacy issues in neuroimaging research: Opportunities, obstacles, challenges, and monsters under the bed". en. In: *Human Brain Mapping* 43.1. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/hbm.25120, pp. 278-291. ISSN: 1097-0193. DOI: 10.1002/hbm.25120. URL: https://onlinelibrary.wiley.com/doi/abs/10.1002/hbm.25120 (visited on 11/27/2023).

Wilkinson, Mark D., Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, Jan-Willem Boiten, Luiz Bonino da Silva Santos, Philip E. Bourne, Jildau Bouwman, Anthony J. Brookes, Tim Clark, Mercè Crosas, Ingrid Dillo, Olivier Dumon, Scott Edmunds, Chris T. Evelo, Richard Finkers, Alejandra Gonzalez-Beltran, Alasdair J. G. Gray, Paul Groth, Carole Goble, Jeffrey S. Grethe, Jaap Heringa, Peter A. C. 't Hoen, Rob Hooft, Tobias Kuhn, Ruben Kok, Joost Kok, Scott J. Lusher, Maryann E. Martone, Albert Mons, Abel L. Packer, Bengt Persson, Philippe Rocca-Serra, Marco Roos, Rene van Schaik, Susanna-Assunta Sansone, Erik Schultes, Thierry Sengstag, Ted Slater, George Strawn, Morris A. Swertz, Mark Thompson, Johan van der Lei, Erik van Mulligen, Jan Velterop, Andra Waagmeester, Peter Wittenburg, Katherine Wolstencroft, Jun Zhao, and Barend Mons (2016). "The FAIR Guiding Principles for scientific data management and stewardship". en. In: *Scientific Data* 3.1. Number:
1 Publisher: Nature Publishing Group, p. 160018. ISSN: 2052-4463. DOI: 10.1038/sdata.2016.18.
URL: https://www.nature.com/articles/sdata201618 (visited on 11/27/2023).

Williams, Chad C., Thomas D. Ferguson, Cameron D. Hassall, Wande Abimbola, and Olave E. Krigolson (2021). "The ERP, frequency, and time-frequency correlates of feedback processing: Insights from a large sample study". en. In: *Psychophysiology* 58.2. ISSN: 0048-5772, 1469-8986. DOI: 10.1111/psyp.13722. URL: https://onlinelibrary.wiley.com/doi/10.1111/psyp.13722 (visited on 11/15/2021).

Yarkoni, Tal (2019). *The Generalizability Crisis*. Tech. rep. type: article. PsyArXiv. DOI: 10.31234/osf.io/jqw35. URL: https://psyarxiv.com/jqw35/ (visited on 03/11/2021).

Yarkoni, Tal, Russell A. Poldrack, Thomas E. Nichols, David C. Van Essen, and Tor D. Wager (2011). "Large-scale automated synthesis of human functional neuroimaging data". en. In: *Nature Methods* 8.8, pp. 665–670. ISSN: 1548-7105. DOI: 10.1038/nmeth.1635. URL: https://www.nature.com/articles/nmeth.1635 (visited on 11/08/2018).

Zaykin, D V (2011). "Optimally weighted Z-test is a powerful method for combining probabilities in meta-analysis." In: *Journal of evolutionary biology* 24.8, pp. 1836–41. ISSN: 1420-9101. DOI: 10.1111/j.1420-9101.2011.02297.x.

Zuo, Xi-Nian, Jeffrey S Anderson, Pierre Bellec, Rasmus M Birn, Bharat B Biswal, Janusch Blautzik, John Breitner, Randy L Buckner, Vince D Calhoun, F Xavier Castellanos, et al. (2014). "An open science resource for establishing reliability and reproducibility in functional connectomics". In: *Scientific data* 1.1, pp. 1–13.
List of Acronyms

**BEP** BIDS extension proposal. 15, 38

**BIDS** Brain Imaging Data Structure. 14, 15, 16, 37, 38, 59

**FAIR** Findable, Accessible, Interoperable and Reusable. 12, 37, 39, 59

**FGLS** feasible generalized least squares. 43

**FWHM** full width at half maximum. 48

**GDPR** European General Data Protection Rule. 13, 22, 23

**GLM** General Linear Model. 25, 26, 42, 48

**HCP Young Adult** Human Connectome Project: Young Adult. 12, 47, 50

**HRF** Hemodynamic Response Function. 20, 31, 48

**IBMA** Image-Based Meta-Analyses. 42

**INCF** International Neuroinformatics Coordinating Facility. 10, 14

**INDI** International Neuroimaging Data-sharing Initiative. 11, 39

**MRI** Magnetic Resonance Imaging. 5, 6, 7, 8, 14, 15, 16, 54, 61

**NIDASH** NeuroImaging Data Sharing task force. 14, 18

**NIDM** Neuroimaging Data Model. 14, 15, 16, 37

**OHBM** Organization for Human Brain Mapping. 10, 54

**task-fMRI** task-based functional Magnetic Resonance Imaging. 5, 6, 11, 13, 15, 18, 19, 20, 21, 25, 26, 29, 30, 31, 32, 33, 34, 37, 40, 41, 42, 45, 47, 49, 50, 59
# Credits

The LATEX template used in this manuscript was adapted from an original template by Pierre Maurel. The credits for the icons used for each section of the contributions are:

* Context: Creative Commons *brain side* by tezar tantular on the noun project.

* Data: Creative Commons MRI by LAFS on the noun project.

* Contributions: Creative Commons *Light* by Numero Uno on the noun project.

* Results: Creative Commons *Graph* by Nisa Varma on the noun project, the noun project.

* Publications: Creative Commons *Book* by Yayat Dayat on the noun project.

* Talks: Creative Commons *presentation* by Gregor Cresnar on the noun project.

* Open artefacts: Creative Commons *Omnichannel* by sevgenjory on the noun project.

Icons used in Fig. 4 are from the CC BY 4.0 Deed Olivia template from Slide Carnival. Other image credits are included within the caption of each figure.

February 14, 2024