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<table class="table gn-sextant-view-table">
<tr class="md-network-link-description">
<td><span xml:lang="eng">Data access Data access</span><span xml:lang="fre">Chemin d'accÃ¨s Chemin d'accÃ¨s</span></td>
<td>sg2m/apinov<br/></td>
</tr>
<tr>
<td><span xml:lang="eng">Date(s)</span><span xml:lang="fre">Date de la donnÃ©e</span></td>
<td>
<dl>
<dd>02-03-2026
                                          (
                                          <div title="Date identifies when the resource was issued" xml:lang="fre">Publication</div>
<div title="Date identifies when the resource was issued" xml:lang="eng">Publication</div>)
                                       </dd>
</dl>
<dl>
<dd>30-06-2023
                                          (
                                          <div title="Date identifies when the resource was brought into
        existence
      " xml:lang="fre">CrÃ©ation</div>
<div title="Date identifies when the resource was brought into
        existence
      " xml:lang="eng">Creation</div>)
                                       </dd>
</dl>
<dl>
<dd> 01-11-2020<i class="fa fa-fw fa-arrow-right"> </i> 30-04-2022
                                           
                                          
                                          (<span xml:lang="eng">Temporal coverage</span><span xml:lang="fre">Couverture temporelle</span>)
                                          <br/></dd>
</dl>
</td>
</tr>
<tr>
<td><span xml:lang="eng">Author(s)</span><span xml:lang="fre">Auteur(s)</span></td>
<td class="" data-gn-read-more="" data-line-number="10"><a href="https://annuaire.ifremer.fr/cv/16703/" target="_blank">Hubert Francoise
                                       (IFREMER)
                                       </a> 
                                    <a href="mailto:,Francoise.Hubert@ifremer.fr" title="Email"><i class="fa fa-fw fa-envelope"> </i></a><br/><a href="https://annuaire.ifremer.fr/cv/17097/" target="_blank">Veron Antoine
                                       (IFREMER)
                                       </a> 
                                    <a href="https://orcid.org/0000-0002-5914-8347" title="ORCID"><img src="https://sextant.ifremer.fr/geonetwork/sextant/style/orcid.svg" style="width:18px;margin-left: 4px;"/> </a><a href="mailto:,Antoine.Veron@ifremer.fr" title="Email"><i class="fa fa-fw fa-envelope"> </i></a><br/><a href="https://annuaire.ifremer.fr/cv/26219/" target="_blank">Noel Cyril
                                       (IFREMER)
                                       </a> 
                                    <a href="https://orcid.org/0000-0002-7139-4073" title="ORCID"><img src="https://sextant.ifremer.fr/geonetwork/sextant/style/orcid.svg" style="width:18px;margin-left: 4px;"/> </a><a href="mailto:,Cyril.Noel@ifremer.fr" title="Email"><i class="fa fa-fw fa-envelope"> </i></a><br/><a href="https://annuaire.ifremer.fr/cv/17043/" target="_blank">Schaeffer Julien
                                       (IFREMER)
                                       </a> 
                                    <a href="mailto:,Julien.Schaeffer@ifremer.fr" title="Email"><i class="fa fa-fw fa-envelope"> </i></a><br/><a href="https://annuaire.ifremer.fr/cv/23485/" target="_blank">Desdouits Marion
                                       (IFREMER)
                                       </a> 
                                    <a href="https://orcid.org/0000-0002-2625-1575" title="ORCID"><img src="https://sextant.ifremer.fr/geonetwork/sextant/style/orcid.svg" style="width:18px;margin-left: 4px;"/> </a><a href="mailto:,Marion.Desdouits@ifremer.fr" title="Email"><i class="fa fa-fw fa-envelope"> </i></a><br/><a href="https://annuaire.ifremer.fr/cv/16962/" target="_blank">Ollivier Joanna
                                       (IFREMER)
                                       </a> 
                                    <a href="mailto:,Joanna.Ollivier@ifremer.fr" title="Email"><i class="fa fa-fw fa-envelope"> </i></a><br/><a href="https://annuaire.ifremer.fr/cv/17679/" target="_blank">Garry Pascal
                                       (IFREMER)
                                       </a> 
                                    <a href="https://orcid.org/0000-0003-3261-2004" title="ORCID"><img src="https://sextant.ifremer.fr/geonetwork/sextant/style/orcid.svg" style="width:18px;margin-left: 4px;"/> </a><a href="mailto:,Pascal.Garry@ifremer.fr" title="Email"><i class="fa fa-fw fa-envelope"> </i></a><br/><a href="https://annuaire.ifremer.fr/cv/16262/" target="_blank">Le Guyader Soizick
                                       (IFREMER)
                                       </a> 
                                    <a href="mailto:,Soizick.Le.Guyader@ifremer.fr" title="Email"><i class="fa fa-fw fa-envelope"> </i></a><br/></td>
</tr>
<tr>
<td><span xml:lang="eng">Contact(s)</span><span xml:lang="fre">Contact(s)</span></td>
<td data-gn-read-more="" data-line-number="10">IFREMER 
                                    <a href="mailto:sismer@ifremer.fr" title="Email"><i class="fa fa-fw fa-envelope"> </i></a><br/></td>
</tr>
<tr>
<td><span xml:lang="eng">Source</span><span xml:lang="fre">Source</span></td>
<td>
<div xml:lang="eng">
<p xmlns:xs="http://www.w3.org/2001/XMLSchema">LSEM</p>
</div><br/></td>
</tr>
<tr>
<td><span xml:lang="eng">Lineage</span><span xml:lang="fre">GÃ©nÃ©alogie</span></td>
<td data-gn-read-more="">
<div xml:lang="eng">
<p xmlns:xs="http://www.w3.org/2001/XMLSchema">The objective of the Apinov project is to identify the sub-catchment areas contributing to norovirus contamination in a catchment
                                          area upstream of oyster farming sites. Nylon membranes are known for their ability to adsorb microorganisms present in water,
                                          and oysters also accumulate these microorganisms through filtration. These two models are therefore relevant for assessing
                                          viral contamination in water. Over a period of 18 months, water samples were collected by passive sampling at 12 sites (freshwater
                                          river and coastal seawater), and oyster samples were collected at two sites from batches raised in cages submerged in seawater
                                          for at least two months. GI and GII noroviruses were detected by RT-qPCR in both types of samples. The genomic sequences of
                                          GI and GII noroviruses, encoding the capsid (VP1) and polymerase (RdRp), were amplified and sequenced by Illumina MiSeq sequencing
                                          in norovirus-positive water and oyster samples.
                                       </p>
</div>
<div xml:lang="fre">
<p xmlns:xs="http://www.w3.org/2001/XMLSchema">L'objectif du projet APINOV est de dÃ©terminer quels sont les sous-bassins contribuant Ã  la contamination en norovirus d'un
                                          bassin versant situÃ© en amont de sites ostrÃ©icoles. Des Ã©chantillons d'eau ont Ã©tÃ© collectÃ©s par Ã©chantillonnage passif sur
                                          12 sites et des Ã©chantillons d'huÃ®tres ont Ã©tÃ© collectÃ©s sur 2 sites pendant 18 mois. La dÃ©tection des norovirus GI et GII
                                          a Ã©tÃ© rÃ©alisÃ©e par RT-qPCR dans les deux types d'Ã©chantillons. Les sÃ©quences du gÃ©nome des norovirus GI et GII codant pour
                                          la capside et la polymerase ont Ã©tÃ© amplifiÃ©es et sÃ©quencÃ©es par sÃ©quenÃ§age MiSeq dans les Ã©chantillons d'eau et d'huÃ®tre
                                          positif en norovirus.
                                       </p>
</div>
</td>
</tr>
<tr>
<td><span xml:lang="eng">Constraints</span><span xml:lang="fre">Contraintes</span></td>
<td class="gn-record-view_tablecell_aerate">
<dl class="gn-useLimitation">
<dt>
<div xml:lang="fre">Limitation d'utilisation</div>
<div xml:lang="eng">Use limitation</div>
</dt>
<dd><a href="https://creativecommons.org/licenses/by/4.0/">
<div xml:lang="eng">CC-BY (Creative Commons - Attribution)</div>
<div xml:lang="fre">CC-BY (Creative Commons - Attribution)</div></a></dd>
</dl>
<dl class="gn-useConstraints">
<dt>
<div xml:lang="fre">Contraintes d'utilisation</div>
<div xml:lang="eng">Use constraints</div>
</dt>
<dd>
<div title="Formal permission to do something" xml:lang="fre">Licence</div>
<div title="Formal permission to do something" xml:lang="eng">License</div>
</dd>
</dl>
</td>
</tr>
<tr>
<td><span xml:lang="eng">Spatial informations</span><span xml:lang="fre">Informations gÃ©ographiques</span></td>
<td>
<dl>
<dt><span xml:lang="eng">Data type</span><span xml:lang="fre">Type de donnÃ©es</span></dt>
<dd>
<div title="Vector data is used to represent geographic data
      " xml:lang="fre">Vecteur</div>
<div title="Vector data is used to represent geographic data
      " xml:lang="eng">Vector</div>
</dd>
</dl>
</td>
</tr>
</table>

> Citation proposalCiter la ressource Hubert Francoise, Veron Antoine, Noel Cyril, Schaeffer Julien, Desdouits Marion, Ollivier Joanna, Garry Pascal, Le Guyader Soizick (2026). Norovirus GI and GII metabarcoding sequencing of water and Pacific oyster (Magallana gigas) digestive tract samples for the apinov project, 2021-2022 Analyse de la diversitÃ© en norovirus par mÃ©tagÃ©nomique ciblÃ©e sur dans des Ã©chantillons d'eau et d'huÃ®tre.IFREMER https://doi.org/10.12770/6de13934-ec66-4ef9-9305-157642e916be

### accessData

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