# Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Claude Rispe, Fabrice Legeai, Paul Nabity, Rosa Fernández, Arinder Arora, Patrice Baa-Puyoulet, Celeste Banfill, Leticia Bao, Miquel Barberà, Maryem Bouallegue, et al.

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Claude Rispe, Fabrice Legeai, Paul Nabity, Rosa Fernández, Arinder Arora, et al. Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. BMC Biology, 2020, 18 (1), pp.123. 10.1186/s12915-020-00864-7. hal-05190973

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https://hal.inrae.fr/hal-05190973v1

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# Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Claude Rispe<fnref n="1" />*†, Fabrice Legeai<fnref n="2" />*†, Paul D. Nabity³, Rosa Fernández⁴,⁵, Arinder K. Arora⁶, Patrice Baa-Puyoulet⁷, Celeste R. Banfill⁸, Leticia Bao⁹, Miquel Barberà¹⁰, Maryem Bouallègue¹¹, Anthony Bretaudieu<fnref n="2" />, Jennifer A. Brisson¹², Federica Calevro⁷, Pierre Capy¹³, Olivier Catrice¹⁴, Thomas Chertemps¹⁵, Carole Couture<fnref n="16" />, Laurent Delière<fnref n="16" />, Angela E. Douglas⁶,¹⁷, Keith Dufault-Thompson¹⁸, Paula Escuer¹⁹, Honglin Feng²⁰,²¹, Astrid Forneck²², Toni Gabaldón⁴,²³,²⁴, Roderic Guigó²⁵,²⁶, Frédérique Hilliou²⁷, Silvia Hinojosa-Alvarez¹⁹, Yi-min Hsiao²⁸,²⁹, Sylvie Hudaverdian<fnref n="30" />, Emmanuelle Jacquin-Joly³¹, Edward B. James⁸, Spencer Johnston³², Benjamin Joubard<fnref n="16" />, Gaëlle Le Goff³³, Gaël Le Trionnaire<fnref n="30" />, Pablo Librado³⁴, Shanlin Liu³⁵,³⁶,³⁷, Eric Lombaert³⁸, Hsiao-ling Lu³⁹, Martine Maïbèche¹⁵, Mohamed Makni¹¹, Marina Marcet-Houben⁴, David Martínez-Torres⁴⁰, Camille Meslin³¹, Nicolas Montagne⁴¹, Nancy A. Moran⁴², Daciana Papura<fnref n="16" />, Nicolas Parisot⁷, Yvan Rahbé⁴³, Mélanie Ribeiro Lopes⁷, Aida Ripoll-Cladellas²⁵, Stéphanie Robin⁴⁴, Céline Roques⁴⁵, Pascale Roux<fnref n="16" />, Julio Rozas¹⁹, Alejandro Sánchez-Gracia¹⁹, Jose F. Sánchez-Herrero¹⁹, Didac Santesmasses²⁵,⁴⁶, Iris Scatoni⁴⁷, Rémy-Félix Serre⁴⁵, Ming Tang³⁷, Wenhua Tian³, Paul A. Umina⁴⁸, Manuella van Munster⁴⁹, Carole Vincent-Monégat⁷, Joshua Wemmer³, Alex C. C. Wilson⁸, Ying Zhang¹⁸, Chaoyang Zhao³, Jing Zhao³⁵,³⁶, Serena Zhao⁴², Xin Zhou³⁷, François Delmotte<fnref n="16" />*† and Denis Tagu<fnref n="30" />*†

Correction to: BMC Biol 18, 90 (2020)

https://doi.org/10.1186/s12915-020-00820-5

Following publication of the original article [1], the au-
thors identified an error in Fig. 4. The error was made in
the x-axis labels of the three panels, which were noted

as “pairwise dN/dS”. The figure represents distributions
of dS, so the labels were corrected as “pairwise dS”. The
correct Fig. 4 is given below.

The original article can be found online at https://doi.org/10.1186/s12915-020-00820-5.

<footnote>* Correspondence: clau.de.rispe@inrae.fr; fabrice.legeai@inrae.fr; francois.delmotte@inrae.fr; denis.tagu@inrae.fr</footnote>

<footnote>†Claude Rispe and Fabrice Legeai are co-first authors.</footnote>

<footnote>†François Delmotte and Denis Tagu are co-last authors.</footnote>

<footnote n="1">¹BIOEPAR, INRAE, Oniris, Nantes, France</footnote>

<footnote n="2">²BIPAA, IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650 Le Rheu, France</footnote>

<footnote n="16">¹⁶SAVE, INRAE, Bordeaux Sciences Agro, Villenave d'Ornon, France</footnote>

<footnote n="30">³⁰IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650 Le Rheu, France</footnote>

<footnote>Full list of author information is available at the end of the article</footnote>
<figure><img src="image_4.png" /><figcaption>**Fig. 4** Distribution of synonymous distances among paralogs for grape vine phylloxera (panel a, *D. vitifoliae*), pea aphid (panel b, *A. pisum*), and fruit fly (panel c, *D. melanogaster*). Paralogs were identified as RBH pairs, with an iterative approach allowing to cover both recent duplications (terminal nodes in gene families) and more ancient duplications (internal nodes). For readability, the y-axis (number of dS classes) is truncated to 1500 (numbers above that threshold are indicated on the figures). For both *A. pisum* and *D. vitifoliae*, an arrowhead indicates the median dS between orthologs (RBH genes between the two species), dS = 2.83: this metric, a proxy of the age of separation between the two species allows to distinguish duplications that are more recent (left of the arrow, lower dS values) *or* more ancient (right of the arrowhead, higher dS) than the speciation event</figcaption></figure>
Author details

Published online: 11 September 2020

Reference

1. Rispe C, et al. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. BMC Biol. 2020;18:90. https://doi.org/10.1186/s12915-020-00820-5.

<footnote n="1">¹BIOEPAR, INRAE, Oniris, Nantes, France. ²BIPAA, IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650 Le Rheu, France. ³Department of Botany and Plant Sciences, University of California, Riverside, USA.</footnote>

<footnote n="4">⁴Bioinformatics and Genomics Unit, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Dr. Aiguader, 88, 08003 Barcelona, Spain. ⁵Present address: Institute of Evolutionary Biology (CSIC-UPF), Passeig marítim de la Barceloneta 37-49, 08003 Barcelona, Spain.</footnote>

<footnote n="6">⁶Department of Entomology, Cornell University, Ithaca, NY 14853, USA. ⁷Univ Lyon, INSA-Lyon, INRAE, BF2I, UMR0203, F-69621 Villeurbanne, France.</footnote>

<footnote n="8">⁸Department of Biology, University of Miami, Coral Gables, FL 33146, USA.</footnote>

<footnote n="9">⁹Facultad de Agronomía, Montevideo, Uruguay. ¹⁰Institut de Biologia Integrativa de Sistemes, Parc Científic Universitat de Valencia, C/ Catedrático José Beltrán n° 2, 46980 Paterna, València, Spain. ¹¹Université de Tunis El Manar, Faculté des Sciences de Tunis, LR01ES05 Biochimie et Biotechnologie, 2092 Tunis, Tunisia. ¹²Department Biol, Univ Rochester, Rochester, NY 14627, USA. ¹³Laboratoire Evolution, Génomes, Comportement, Ecologie CNRS, Univ. Paris-Sud, IRD, Université Paris-Saclay, Gif-sur-Yvette, France. ¹⁴LIPM, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France. ¹⁵Sorbonne Université, UPEC, Université Paris 7, INRAE, CNRS, IRD, Institute of Ecology and Environmental Sciences, Paris, France. ¹⁶SAVE, INRAE, Bordeaux Sciences Agro, Villenave d'Ornon, France. ¹⁷Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA. ¹⁸Department of Cell and Molecular Biology, College of the Environment and Life Sciences, University of Rhode Island, Kingston, RI, USA. ¹⁹Departament de Genètica, Microbiologia i Estadística and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, 08028 Barcelona, Spain. ²⁰Department of Biology, University of Miami, Coral Gables, USA. ²¹Current affiliation: Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, USA. ²²Universität für Bodenkultur (BOKU), Vienna, Austria. ²³Universitat Pompeu Fabra, 08003 Barcelona, Spain.</footnote>

<footnote n="24">²⁴Institució Catalana de Recerca i Estudis Avançats (ICREA), Pg. Lluís Companys 23, 08010 Barcelona, Spain. ²⁵Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.</footnote>

<footnote n="26">²⁶Universitat Pompeu Fabra (UPF), Barcelona, Spain. ²⁷Université Côte d'Azur, INRAE, CNRS, Institut Sophia Agrobiotech, Sophia-Antipolis, France. ²⁸Institute of Biotechnology and Department of Entomology, College of Bioresources and Agriculture, National Taiwan University, Taipei, Taiwan. ²⁹Present affiliation: Bone and Joint Research Center, Chang Gung Memorial Hospital, Taoyuan, Taiwan. ³⁰IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650 Le Rheu, France. ³¹INRAE, Institute of Ecology and Environmental Sciences, Versailles, France. ³²Department of Entomology, Texas A&M University, College Station, TX 77843, USA. ³³Université Côte d'Azur, INRAE, CNRS, Institut Sophia Agrobiotech, Sophia-Antipolis, France. ³⁴Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, Université de Toulouse, Université Paul Sabatier, Toulouse, France. ³⁵China National GeneBank-Shenzhen, BGI-Shenzhen, Shenzhen 518083, Guangdong Province, People's Republic of China. ³⁶BGI-Shenzhen, Shenzhen 518083, Guangdong Province, People's Republic of China. ³⁷Department of Entomology, College of Plant Protection, China Agricultural University, Beijing 100193, People's Republic of China. ³⁸Université Côte d'Azur, INRAE, CNRS, ISA, Sophia Antipolis, France. ³⁹Department of Post-Modern Agriculture, MingDao University, Changhua, Taiwan. ⁴⁰Institut de Biologia Integrativa de Sistemes, Parc Científic Universitat de Valencia, C/ Catedrático José Beltrán n° 2, 46980 Paterna, València, Spain. ⁴¹Sorbonne Université, Institute of Ecology and Environmental Sciences, Paris, France. ⁴²Department of Integrative Biology, University of Texas at Austin, Austin, USA. ⁴³Univ Lyon, INRAE, INSA-Lyon, CNRS, UCBL, UMR5240 MAP, F-69622 Villeurbanne, France.</footnote>

<footnote n="44">⁴⁴BIPAA IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650 Le Rheu, France. ⁴⁵Plateforme Génomique Get-PlaGe, Centre INRAE de Toulouse Midi-Pyrénées, 24 Chemin de Borde Rouge, Auzeville, CS 52627, 31326 Castanet-Tolosan Cedex, France. ⁴⁶Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston,</footnote>

<footnote>MA 02115, USA. ⁴⁷Facultad de Agronoía, Montevideo, Uruguay. ⁴⁸School of BioSciences, The University of Melbourne, Parkville, VIC, Australia. ⁴⁹BGPI, Université Montpellier, CIRAD, INRAE, Montpellier SupAgro, Montpellier, France.</footnote>