# PHENET-EMPHASIS Data Management Training

Cyril Pommier, Isabelle Alic, Sylvain Poque, Sebastian Beier, Farzaneh Kazemipour-Ricci, Salvatore Cuomo, Sven Warris, Yin Chen, Carla I.C. Pinheiro, Peter Selby

► To cite this version:

Cyril Pommier, Isabelle Alic, Sylvain Poque, Sebastian Beier, Farzaneh Kazemipour-Ricci, et al. PHENET-EMPHASIS Data Management Training. Doctoral. Data Management training, Paris, France. 2024, 1 p. hal-04822964

HAL Id: hal-04822964

https://hal.inrae.fr/hal-04822964v1

Submitted on 6 Dec 2024

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PHENET
PHENOTYPING & ENVIROTYPING
SOLUTIONS FOR AGROECOLOGY

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EMPHASIS

# PHENET-EMPHASIS Data Management Training

## Paris - 04, 05 & 06 December

## Final Agenda

<table><thead><tr><th></th><th>Wednesday 4/12</th><th>Thursday 5/12</th><th>Friday 6/12</th></tr></thead><tbody><tr><td>09:00</td><td></td><td>First hands On, <strong>bring your own data</strong> : File template</td><td></td></tr><tr><td>09:30</td><td></td><td>Variable building in the MIAPPE template</td><td>Sequence data management</td></tr><tr><td>10:00</td><td></td><td><em>Isabelle Alic, Farzaneh Kazemipour, Cyril Pommier (INRAe)</em></td><td><strong>Bring Your Own Data!!</strong></td></tr><tr><td>10:30</td><td></td><td><em>Cyril Pommier</em></td><td>Hands on submission @ EBI</td></tr><tr><td>11:00</td><td></td><td><em>Break</em></td><td>Sebastian Beier (FZ Juelich)</td></tr><tr><td>11:30</td><td></td><td>PHIS: introduction to the Phenotyping Hybrid Information System - <em>Isabelle Alic</em></td><td></td></tr><tr><td>12:00</td><td>Welcome &amp; Lunch</td><td>Lunch</td><td>15' Break &amp; Menti</td></tr><tr><td>13:00</td><td>Introduction &amp; organisation</td><td></td><td>Cloud infrastructure: deploy your own analysis workflow</td></tr><tr><td>13:30</td><td>FAIR data and metadata</td><td></td><td><em>Yin Chen (EGI)</em></td></tr><tr><td>14:00</td><td><em>Farzaneh Kazemipour, Cyril Pommier (INRAe)</em></td><td></td><td></td></tr><tr><td>14:30</td><td>Data standards for biologists</td><td>Hands On, <strong>Bring Your Own Data (PHIS, File, ...)</strong></td><td>Lunch</td></tr><tr><td>15:00</td><td>(MIAPPE &amp; Crop Ontology)</td><td><em>Isabelle Alic, Farzaneh Kazemipour</em></td><td>Helsinki Feedback: data traceability, image and data management</td></tr><tr><td>15:30</td><td><em>Cyril Pommier</em></td><td>Submission in Dataverse &amp; Zenodo</td><td><em>Sylvain Poque (University of Helsinki)</em></td></tr><tr><td>16:00</td><td><strong>Break</strong></td><td><em>Cyril Pommier</em></td><td></td></tr><tr><td>16:30</td><td>Workflows (AGENT) &amp; DMP pragmatic and usefull usage for RDM</td><td></td><td>WUR ISA Based File solution (presentation + hands on)</td></tr><tr><td>17:00</td><td>Data standards for computer scientists</td><td></td><td><em>Sven Warris (WU, NPEC)</em></td></tr><tr><td>17:30</td><td><em>Peter Selby (Cornell University) - S2A</em></td><td>Images information extraction and management using AI</td><td>Wrap up, questions, last hands on, Menti closing</td></tr><tr><td>18:00</td><td><em>Cyril Pommier, Isabelle Alic</em></td><td><em>Salvatore Cuomo (University of Naples)</em></td><td></td></tr><tr><td></td><td></td><td>Feedback / discussion introduction / Menti</td><td></td></tr><tr><td></td><td></td><td><em>Carla Pinheiro (NOVA-FCT)</em></td><td></td></tr><tr><td></td><td>Dinner on your own</td><td>Social Diner</td><td></td></tr></tbody></table>