# Self-assembled tetrazine cryptophane for ion pair recognition and guest release by cage disassembly

Louise Miton, Elise Antonetti, Marie Poujade, Jean-Pierre Dutasta, Paola

Nava, Alexandre Martinez, Yoann Cotelle

► To cite this version:

Louise Miton, Elise Antonetti, Marie Poujade, Jean-Pierre Dutasta, Paola Nava, et al. Self-assembled tetrazine cryptophane for ion pair recognition and guest release by cage disassembly. Chemical Communications, 2024, 60, pp.5217-5220. 10.1039/D4CC01421A. hal-04562553

HAL Id: hal-04562553

https://amu.hal.science/hal-04562553v1

Submitted on 14 Nov 2024

HAL is a multi-disciplinary open access
archive for the deposit and dissemination of sci-
entific research documents, whether they are pub-
lished or not. The documents may come from
teaching and research institutions in France or
abroad, or from public or private research centers.

L'archive ouverte pluridisciplinaire HAL, est
destinée au dépôt et à la diffusion de documents
scientifiques de niveau recherche, publiés ou non,
émanant des établissements d'enseignement et de
recherche français ou étrangers, des laboratoires
publics ou privés.

<figure><img src="image_1.png" /></figure>

Distributed under a Creative Commons Attribution 4.0 International License
<figure><img src="image_2.png" /></figure>

Check for updates

Cite this: *Chem. Commun.*, **2024**,
*60*, 5217

Received 28th March 2024
Accepted 16th April 2024

DOI: 10.1039/d4cc01421a

rsc.li/chemcomm

# Self-assembled tetrazine cryptophane for ion pair recognition and guest release by cage disassembly†

Louise Miton,ª Elise Antonetti,ª Marie Poujade,ª Jean-Pierre Dutasta,ᵇ

Paola Nava,ª and Yoann Cotelleª

Hereby, we describe the synthesis of a self-assembled syn-cryptophane using dynamic nucleophilic aromatic substitution of tetrazines. ¹H NMR cage titrations reveal that the tetramethylammonium cation binds under slow exchange conditions while counter-anions show a fast exchange regime. Finally, the cryptophane can be disassembled by the addition of thiols allowing guest release.

Cryptophanes are a class of cage molecules that are built from two cyclotriveratrylene (CTV) moieties usually linked by alkylene-dioxy arms,¹ although other linkers such as disulfide bridges,² *p*-phenylene groups³ or triazole rings⁴ have been reported. These molecular hosts attract great interest as they display remarkable recognition properties toward small molecules like epoxides,⁵ methane and halogenomethane,²ᵃ,⁶ anions,⁷ cations,⁸ or even atoms like radon or xenon.⁷ᵇ,⁹ However, cryptophanes have not yet been used for ion-pair recognition due to their homotopicity. Promising related applications are currently being investigated; for instance, the development of hyperpolarized ¹²⁹Xe biosensors for MRI,¹⁰ the design of devices for methane sensing,¹¹ and the trapping of radioactive Cs⁺ found in nuclear waste.¹² Both covalent and self-assembled cryptophane cages¹³ have been reported and the photoswitching of metallo cryptophanes has also been described; however, without the release of a guest.¹⁴ Nevertheless, controlled guest release triggered by the disassembly of a cryptophane host remains unexplored. To avoid the possible dissociation of cryptophane-like coordination cages at low concentrations, which could limit their applications, we turned our attention to the construction of covalent cryptophane cages by subcomponent self-assembly using reversible covalent bonds. We

hypothesized that a cryptophane bearing tetrazine units as linkers should solve both issues, i.e. heterotopicity and controlled guest release, simultaneously. Indeed, 1,2,4,5-tetrazines are known to bind cations¹⁵ by nitrogen lone pairs and anions¹⁶ through anion-π interactions. Thus, their embedment in a receptor should raise ion pair recognition. Moreover, the dynamic nucleophilic aromatic substitution of tetrazines (S<sub>N</sub>Tz), recently reported by the group of Carrillo, facilitates their assembly into a functional receptor and the subsequent addition of thiols was shown to promote their disassembly.¹⁷ Intrigued by the versatility of such a simple building block, we therefore set out to investigate its incorporation into a heteroditopic self-assembled cryptophane for ion pair recognition, capable of guest release using a simple chemical stimulus. The dynamic nature of dative bonds has already been employed for guest release in metallacages;¹⁸ however, this is the first example of a covalent cage using S<sub>N</sub>Tz. In this communication, we describe the synthesis of a tris-tetrazine syn-cryptophane 3, the binding of the tetramethylammonium cation in slow exchange, together with the recognition of a counter anion in fast exchange harnessed by anion-π and coulombic interactions. Finally, on-demand guest release was achieved by the disassembly of the receptor using alkanethiols (Scheme 1).

The synthesis of cryptophane 3 is straightforward and involves the reaction of two equivalents of rac-CTV-OH 1 and three equivalents of dichloro-s-tetrazine 2 in acetonitrile in the presence of triethylamine at room temperature for 3.5 h (15% yield) (Scheme 2). Cryptophane 3 was fully characterized by NMR and HRMS techniques (see ESI†). The ¹H NMR spectrum of 3 in acetonitrile-d₃ displays OMe protons (c) as a singlet at 3.58 ppm, two AB doublets for the H<sub>e</sub> and H<sub>a</sub> protons at 3.73 and 4.87 ppm, respectively, and finally aromatic protons (b) at 7.08 ppm and (a) at 7.42 ppm (Fig. 2(b), 0.0 equiv.). It is important to note that cryptophane 3 was obtained exclusively as the achiral syn-diastereomer after silica gel chromatography. Experiments starting from enantiopure CTV 1 did not give any trace of anti-cryptophane, but led to the formation of oligomers. Single crystals

<footnote>ªAix Marseille Université, CNRS, Centrale Marseille, iSm2, UMR 7313, 13397 Marseille, France. E-mail: alexandre.martinez@centrale-marseille.fr, yoann.cotelle@univ-amu.fr</footnote>

<footnote>ᵇENS Lyon, CNRS, Laboratoire de Chimie, UMR 5182, 46 Allée d'Italie, 69364 Lyon, France</footnote>

<footnote>†Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4cc01421a</footnote>
<figure><img src="image_3.png" /><figcaption>Scheme 1 Self-assembly of cryptophane **3** using CTV-OH **1** and dichloro-s-tetrazine **2**. Receptor **3** is then able to recognize ion pairs with different exchange dynamics and finally the disassembly is made possible using alkanethiols.</figcaption></figure>

<figure><img src="image_4.png" /><figcaption>Scheme 2 Synthesis of cryptophane **3**. (a) Conditions: Et₃N, acetonitrile, r.t., 3.5 h, 15% yield.</figcaption></figure>

of **3** were grown from slow evaporation of an acetonitrile solution at 4 °C. The resolution is only partial, as the crystals degrade due to fast desolvation and the cif file could not pass the checkif process. However, the resolution was sufficient enough to assess the stereochemistry of cryptophane **3** (Fig. 1). Optimization of the syn-cryptophane **3** was also performed by DFT calculations in the gas phase (Fig. S2, ESI†) and is in accordance with the partial structure determined by X-ray analysis.

Next, we evaluated the affinity of cryptophane **3** for the tetramethylammonium chloride (NMe₄Cl) ion pair. A solution of 3 (0.79 mM) was titrated by aliquots of an NMe₄Cl solution (19 mM) in acetonitrile-d₃ followed by ¹H NMR (Fig. 2(b)). From this titration, we first observed the appearance of a new set of signals corresponding to the formation of a complex in slow exchange compared to the NMR time scale. Such behavior is expected for the recognition of tetramethylammonium by cryptophanes.¹c Cryptophane **3** can interact with cations, not only through the usual cation-π interactions with the CTV unit, but also engage in

additional interactions with the lone pair of the tetrazine's nitrogens.¹⁵ Protons corresponding to [3·NMe₄]⁺ can be observed at 3.50 ppm for protons (c), at 3.76 and 4.89 ppm for protons Hₐ and Hₐ respectively and at 7.09 and 7.48 ppm for aromatic protons (b) and (a), after the addition of one equivalent of NMe₄Cl. A binding constant of Kₐ = 460 was calculated for the recognition of the tetramethylammonium cation considering a 1:1 stoichiometry. Following the addition of more aliquots (Fig. 2(b)), the signals (a) and (b) corresponding to the complex [3·NMe₄]⁺ are shifted towards lower fields, corresponding to the formation of a second species, a ternary complex with chloride [3·NMe₄Cl]. These shifts are modest; however, they support the recognition of the anion. By plotting the variation of the [3·NMe₄Cl] chemical shifts against the host guest ratio, we obtained a binding constant of Kₐ = 124 considering a 1:1 stoichiometry (Fig. S9, ESI†). This behavior is remarkable as it accounts for following the recognition of ion pairs using two different ¹H NMR probes and thus allows the determination of the two binding constants separately without additional experiments. In addition, the DFT optimized structure of [3·NMe₄Cl] gives valuable information on the interactions stabilizing the complex. Multiple short contacts are observed between the tetramethylammonium guest and the aromatic rings of the CTVs, which can be described as cation π-interactions (dₕ-C = 2.74 and 2.78 Å), as well as with the nitrogen of the tetrazines (dₕ-N = 2.14, 2.44 and 2.38 Å) (Fig. S3, ESI†). An additional interaction between the chloride and the tetrazine (dₘ-N = 3.27 Å) can be observed characteristic of an anion-π interaction (Fig. 3).

In order to get more insights into the two equilibria, we decided to titrate cryptophane **3** with tetramethylammonium acetate (NMe₄OAc), providing a counter anion with a trigonal geometry. Satisfyingly, the ¹H NMR titration also shows a slow exchange compared to the NMR time scale characterized by the appearance of a new set of signals upon the addition of the titrating solution (Fig. 2(c)). Integration of the chemical shifts corresponding to the complex and the free cryptophane **3** gives a binding constant of Kₐ = 2000 for NMe₄⁺ (1:1 stoichiometry). The difference with the binding constant obtained with NMe₄Cl probably arises from a less tight ion pair in NMe₄OAc. After the addition of more aliquots, the signals of protons (a) and (b) shift downfield, corresponding to an ion pair ternary complex [3·NMe₄OAc]. At the early stage of the titration, the chemical shift of the methyl of the acetate moiety is deshielded (1.76 ppm) due to the formation of the ternary complex, but will eventually match the chemical shift of acetate in solution

<figure><img src="image_5.png" /><figcaption>Fig. 1 X-ray diffraction structure of **3**. H atoms are omitted.</figcaption></figure>

<figure><img src="image_6.png" /></figure>
<figure><img src="image_7.png" /><figcaption>Fig. 2 (a) Equilibria for the recognition of ion pairs by cryptophane 3 and proton assignment. (b) Titration of 3 (0.79 mM) by NMe₄Cl (19 mM); inset shows the enlargement of the chemical shifts between 7.05 and 7.10 ppm and (c) titration of 3 (1 mM) by NMe₄OAc (24 mM) (500 MHz, acetonitrile-d₃, 298 K).</figcaption></figure>

<figure><img src="image_8.png" /><figcaption>Fig. 3 DFT optimized structures of [3·Me₄NCl].</figcaption></figure>

(1.65 ppm) due to the large number of equivalents added (14 equiv.). The binding constant $K_a = 67$ of [3·NMe₄]⁺ for acetate was determined from the variation of the chemical shift of proton (a) assuming a 1:1 stoichiometry (Fig. S8, ESI†). Hence, tetramethylammonium ion pairs are recognized by cryptophane 3, which exhibit different exchange rates depending on the nature of the ion.

Tetrazines are good acceptors for anion-π interactions, we thus decided to evaluate if the concomitant complexation of the tetramethylammonium cation was necessary for the complexation of the anion by the cryptophane cage or if the affinity of cryptophane 3 for anions remains without tetramethylammonium trapped inside. Titrations of 3 with tetrabutylammonium chloride or acetate did not show any binding event in acetonitrile-d₃ (Fig. S6 and S7, ESI†). Since anions are recognized by the cationic

complex [3·NMe₄]⁺ but not by 3 alone, we have clear evidence for a positive allosteric effect which could be attributed to synergistic coulombic and anion-π interactions.

Lastly, we investigated the disassembly of the cryptophane 3 taking advantage of the dynamic nucleophilic aromatic substitution of tetrazines. In the presence of alkanethiols and a base, the group of Carrillo demonstrated the disassembly of tetrazine cages.¹⁷ However, this has never been achieved on an inclusion complex. To this end, 1-hexanethiol (10 equiv.) and triethylamine (10 equiv.) were added to an equimolar mixture of 3 and NMe₄OAc (Fig. 4). After stirring for one hour at room temperature, we observed the ¹H NMR signals of the CTV 1 confirming the disassembly of cryptophane 3. In addition, the chemical shift of NMe₄⁺ is at 3.00 ppm, close to the 3.15 ppm observed for NMe₄⁺ in acetonitrile-d₃. This experiment demonstrates the possibility of disassembling cryptophane 3 in the presence of alkanethiol and a base leading to the release of the tetramethylammonium cation.

In conclusion, a self-assembled tetrazine cryptophane receptor 3 was obtained in one step. This achiral heteroditopic molecular cage forms an inclusion complex with the tetramethylammonium cation, which can simultaneously bind anionic species to provide [3·NMe₄Anion] complexes. No affinity for anionic guests without a cation inside the cavity was measured, suggesting a positive allosteric effect. This result can be explained by a synergy between anion-π, cation-π and coulombic interactions. Moreover, the slow and fast exchange kinetics observed, respectively, with cationic and anionic guests, allowed the determination of both binding constants in a single titration. Cryptophane disassembly was achieved by

<figure><img src="image_9.png" /></figure>
<figure><img src="image_10.png" /><figcaption>Fig. 4 Superposition of the ¹H NMR spectra (400 MHz, acetonitrile-d₃, 298 K) of (a) CTV **1** (see atom labelling on Fig. 1), (b) the mixture obtained after one hour of stirring of an equimolar solution of **3** (1.6 mM, acetonitrile-d₃) and NMe₄OAc (1.6 mM, acetonitrile-d₃) in the presence of 1-hexanethiol (10 equivalents) and triethylamine (10 equivalents) and (c) the [3·NMe₄OAc] complex.</figcaption></figure>

exchange reaction in the presence of thiols and a base, triggering the release of the encapsulated guest molecule. Finally, post-functionalization of the tetrazine units *via* inverse electron demand Diels-Alder [4+2] cycloadditions would be of interest to modify the cryptophane structure. Studies are currently in progress in our group.

This work was supported by the ANR, grant ANR-19-CE07-0024 and ANR-21-CE07-0011.

## Conflicts of interest

There are no conflicts to declare.

## Notes and references

1. (a) J. Gabard and A. Collet, *J. Chem. Soc., Chem. Commun.*, 1981, 1137; (b) A. Collet, *Tetrahedron*, 1987, **43**, 5725; (c) T. Brotin and J.-P. Dutasta, *Chem. Rev.*, 2009, **109**, 88; (d) S. Kancherla and J. H. Hansen, *Eur. J. Org. Chem.*, 2024, e202301050.

2. (a) M. A. Little, J. Donkin, J. Fisher, M. A. Halcrow, J. Loder and M. J. Hardie, *Angew. Chem., Int. Ed.*, 2012, **51**, 764; (b) F. Brégier, O. Hudeček, F. Chaux, M.-J. Penouilh, J.-C. Chambron, P. Lhoták, E. Aubert and E. Espinosa, *Eur. J. Org. Chem.*, 2017, 3795.

3. F. L. Thorp-Greenwood, M. J. Howard, L. T. Kuhn and M. J. Hardie, *Chem. – Eur. J.*, 2019, **25**, 3536.

4. P. Satha, G. T. Illa, S. Hazra and C. S. Purohit, *ChemistrySelect*, 2017, **2**, 10699.

5. (a) A. Bouchet, T. Brotin, M. Linares, H. Ågren, D. Cavagnat and T. Buffeteau, *J. Org. Chem.*, 2011, **76**, 4178; (b) N. De Rycke, M. Jean, N. Vanthuyne, T. Buffeteau and T. Brotin, *Eur. J. Org. Chem.*, 2018, 1601.

6. (a) L. Garel, J. P. Dutasta and A. Collet, *Angew. Chem., Int. Ed. Engl.*, 1993, **32**, 1169; (b) J. Crassous, F. Monier, J.-P. Dutasta, M. Ziskind, C. Daussy, C. Grain and C. Chardonnet, *ChemPhysChem*, 2003, **4**, 541; (c) E. Chaffee, H. Fogarty, T. Brotin, B. M. Goodson and J.-P. Dutasta, *J. Phys. Chem. A*, 2009, **113**, 1367.

7. (a) R. M. Fairchild and K. T. Holman, *J. Am. Chem. Soc.*, 2005, **127**, 16364; (b) R. M. Fairchild, A. I. Joseph, K. T. Holman, H. A. Fogarty, T. Brotin, J.-P. Dutasta, C. Boutin, G. Huber and P. Berthault, *J. Am. Chem. Soc.*, 2010, **132**, 15505.

8. (a) T. Brotin, R. Montserret, A. Bouchet, D. Cavagnat, M. Linares and T. Buffeteau, *J. Org. Chem.*, 2012, **77**, 1198; (b) D. Zhang, T. K. Ronson, J. L. Greenfield, T. Brotin, P. Berthault, E. Léonce, J.-L. Zhu, L. Xu and J. R. Nitschke, *J. Am. Chem. Soc.*, 2019, **141**, 8339.

9. (a) D. R. Jacobson, N. S. Khan, R. Colle, R. Fitzgerald, L. Laureano-Perez, Y. Bai and I. J. Dmochowski, *Proc. Natl. Acad. Sci. U. S. A.*, 2011, **108**, 10969; (b) K. Bartik, M. Luhmer, J.-P. Dutasta, A. Collet and J. Reisse, *J. Am. Chem. Soc.*, 1998, **120**, 784; (c) R. M. Fairchild, A. I. Joseph, K. T. Holman, H. A. Fogarty, T. Brotin, J.-P. Dutasta, C. Boutin, G. Huber and P. Berthault, *J. Am. Chem. Soc.*, 2010, **132**, 15505; (d) A. I. Joseph, G. El-Ayle, C. Boutin, E. Léonce, P. Berthault and K. T. Holman, *Chem. Commun.*, 2014, **50**, 15905; (e) A. I. Joseph, S. H. Lapidus, C. M. Kane and K. T. Holman, *Angew. Chem., Int. Ed.*, 2015, **54**, 1471; (f) C. Vigier, D. Fayolle, H. El Siblani, J. Sopkova de Oliveira Santos, F. Fabis, T. Cailly and E. Dubost, *Angew. Chem., Int. Ed.*, 2022, **61**, e202208580.

10. (a) S. D. Zemerov, Y. Lin and I. J. Dmochowski, *Anal. Chem.*, 2021, **93**, 1507; (b) H. Zhang, Q. Yu, Y. Li, Z. Yang, X. Zhou, S. Chen and Z.-X. Jiang, *Chem. Commun.*, 2020, **56**, 3617; (c) E. Mari, Y. Bousmah, C. Boutin, E. Léonce, G. Milanole, T. Brotin, P. Berthault and M. Erard, *ChemBioChem*, 2019, **20**, 1450; (d) H. Zhang, S. Chen, Y. Yuan, Y. Li, Z. Jiang and X. Zhou, *ACS Appl. Bio Mater.*, 2019, **2**, 27; (e) E. Mari and P. Berthault, *Analyst*, 2017, **142**, 3298; (f) Y. Wang and I. J. Dmochowski, *Acc. Chem. Res.*, 2016, **49**, 2179; (g) G. K. Seward, Y. Bai, N. S. Khan and I. J. Dmochowski, *Chem. Sci.*, 2011, **2**, 1103; (h) G. K. Seward, Q. Wei and I. J. Dmochowski, *Bioconjugate Chem.*, 2008, **19**, 2129.

11. (a) F. T. Dullo, S. Lindecrantz, J. Jågerskå, J. H. Hansen, M. Engqvist, S. A. Solbø and O. G. Hellesø, *Opt. Express*, 2015, **23**, 31564; (b) A. Estelmann and R. Prien, *IEEE Sens. J.*, 2023, **23**, 4785; (c) J. Yang, L. Zhou, X. Che, J. Huang, X. Li and W. Chen, *Sens. Actuators, B*, 2016, **235**, 717; (d) C. Boulart, M. C. Mowlem, D. P. Connelly, J.-P. Dutasta and Ch. R. German, *Opt. Express*, 2008, **16**, 12607; (e) M. Benounis, N. Jaffreiz-Renault, J.-P. Dutasta, K. Cherif and A. Abdelghani, *Sens. Actuators, B*, 2005, **107**, 32; (f) T. Hong, J. T. Culp, K.-J. Kim, J. Devkota, C. Sun and P. R. Ohodnicki, *TrAC, Trends Anal. Chem.*, 2020, **125**, 115820.

12. (a) T. Brotin, P. Berthault, D. Pitrat and J.-C. Mulatier, *J. Org. Chem.*, 2020, **85**, 9622; (b) L.-L. Chapellet, J.-P. Dognon, M. Jean, N. Vanthuyne, P. Berthault, T. Buffeteau and T. Brotin, *ChemistrySelect*, 2017, **2**, 5292.

13. (a) M. J. Hardie, *Chem. Lett.*, 2016, **45**, 1336; (b) J. J. Henkelis and M. J. Hardie, *Chem. Commun.*, 2015, **51**, 11929; (c) S. Kai, T. Kojima, F. L. Thorp-Greenwood, M. J. Hardie and S. Hiraoka, *Chem. Sci.*, 2018, **9**, 4104; (d) V. E. Pritchard, D. Rota Martir, S. Oldknow, S. Kai, S. Hiraoka, N. J. Cookson, E. Zysman-Colman and M. J. Hardie, *Chem. – Eur. J.*, 2017, **23**, 6290; (e) J. J. Henkelis, C. J. Carruthers, S. E. Chambers, R. Clowes, A. I. Cooper, J. Fisher and M. J. Hardie, *J. Am. Chem. Soc.*, 2014, **136**, 14393; (f) A. Schaly, Y. Rousselin, J.-C. Chambron, E. Aubert and E. Espinosa, *Eur. J. Inorg. Chem.*, 2016, 832; (g) A. Schaly, M. Meyer, J.-C. Chambron, M. Jean, N. Vanthuyne, E. Aubert, E. Espinosa, N. Zorn and E. Leize-Wagner, *Eur. J. Inorg. Chem.*, 2019, 2691.

14. (a) E. Britton, R. J. Ansell, M. J. Howard and M. J. Hardie, *Inorg. Chem.*, 2021, **60**, 12912; (b) S. Oldknow, D. R. Martir, V. E. Pritchard, M. A. Blitz, C. W. G. Fishwick, E. Zysman-Colman and M. J. Hardie, *Chem. Sci.*, 2018, **9**, 8150.

15. O. Stetsiuk, A. Abhervé and N. Avarvari, *Dalton Trans.*, 2020, **49**, 5759.

16. M. Savastano, C. Bazzicalupi, C. Giorgi, C. García-Gallarín, M. D. López de la Torre, F. Pichierri, A. Bianchi and M. Melguizo, *Inorg. Chem.*, 2016, **55**, 8013.

17. T. Santos, D. S. Rivero, Y. Pérez-Pérez, E. Martín-Encinas, J. Pasán, A. H. Daranas and R. Carrillo, *Angew. Chem., Int. Ed.*, 2021, **60**, 18783.

18. (a) T. Y. Kim, R. A. S. Vasdev, D. Preston and J. D. Crowley, *Chem. – Eur. J.*, 2018, **24**, 14878; (b) A. J. McConnell, C. S. Wood, P. P. Neelakandan and J. R. Nitschke, *Chem. Rev.*, 2015, **115**, 7729.

<figure><img src="image_11.png" /></figure>