PharMolix/UniProtQA huggingface dataset:
Protein: STABP_MOUSE
Sequence: MSDHGDVSLPPQDRVRILSQLGSAVELNEDIPPRRYYRSGVEIIRMASVYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAIIPEKKDAVKKLKSVAFPKAEELKTELLRRYTKEYEQYKERKKKEEEELARNIAIQQELEKEKQRVAQQKQKQLEQEQFHAFEEMIQRQELEKERLKIVQEFGKVDPGPCGPLLPDLEKPCVDVAPSSPFSPTQTPDCNTGMRPAKPPVVDRSLKPGALSVIENVPTIEGLRHIVVPRNLCSEFLQLASANTAKGIETCGVLCGKLMRNEFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPKFQETGFFKLTDYGLQEISTCRQKGFHPHGRDPPLFCDCSHVTVKDRIVTITDLR
What is the function of this protein?
Zinc metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains.  Does not cleave 'Lys-48'-linked polyubiquitin chains.  Plays a role in signal transduction for cell growth and MYC induction mediated by IL-2 and GM-CSF.  Potentiates BMP (bone morphogenetic protein) signaling by antagonizing the inhibitory action of SMAD6 and SMAD7.  Has a key role in regulation of cell surface receptor-mediated endocytosis and ubiquitin-dependent sorting of receptors to lysosomes.  Endosomal localization of STAMBP is required for efficient EGFR degradation but not for its internalization.  Involved in the negative regulation of PI3K-AKT-mTOR and RAS-MAP signaling pathways.
What are the official names of this protein?
STAM-binding protein, Associated molecule with the SH3 domain of STAM.
What is the protein family that this protein belongs to?
Belongs to the peptidase M67C family.
What are the subcellular locations of this protein?
Nucleus. Membrane; Peripheral membrane protein. Cytoplasm. Early endosome.
Protein: PGLR_PHACE
Sequence: MSIRLIAVLSAASIAVTSATPVADSSCTISSFDQVASVLAECTDIVVSNLEVPAGETLNLETKKKGVTITFEGKTTFAYKEWTGPLLRVKGKAITVVGAKGSVLDGQGQLYWDGKGGNGGIKKPKFFKIKATEGSHFKNINLLNCPVQVHSIDHSGPLTLSGWNIDVSQGDKDALGHNTDGFDINTTDQLTIEDTVVKNQDDCIAVNQGTNFLFNNLDCSGGHGLSLSVGTSHEIIKNTVRNVTFSNSVVRKSRNGIHIKTTYQFRGRYPWRMLTYSNIAMEGIWKYAVNVEQDYKKGKPTGIPVGNIPIKGLHLEKVTGTLTGEESTPVYIICADGACSNFNWSGVSFEGASHASNCSYVPTGYSC
What are the official names of this protein?
Polygalacturonase, PG, Pectinase.
What is the protein family that this protein belongs to?
Belongs to the glycosyl hydrolase 28 family.
What are the subcellular locations of this protein?
Secreted. Secreted, cell wall.
Protein: TUSA_PSET1
Sequence: MSFNNPDHQLDAIGLRCPEPVMMVRAAIRKMNDGETLLIIADDPSTTRDIPSFCTFMDHTLVAKDAEQAPYRYVVKKGL
What is the function of this protein?
Sulfur carrier protein which probably makes part of a sulfur-relay system.
What are the official names of this protein?
Sulfur carrier protein TusA.
What is the protein family that this protein belongs to?
Belongs to the sulfur carrier protein TusA family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: MAUG_METEA
Sequence: MRAILPIPVLIAWAMVVCGGAYAVTTCSGAATATADASQQDLAALKARFRRPESVPHPKANPLTPEKVALGKALFFDPRLSRSGSVSCATCHNPSLGWSDGLTRAVGFGMVPLPRRTPPVLNLAWGTAFQWDGRADSLEAQARMPITAPDEMNMSMDLVVERLKAVPGYAPLFRNAFGSEEPIGARHVTAALATFQRTLVSGEAPFDRWALGDESAIGADAKRGFALFTGKAGCAACHSTWRFTDDSFHDIGLKAGNDLGRGKFAPPSVTAMRYAFKTPSLRDLRMEGPYMHDGQLGSLEAVLDHYIKGGEKRPSLSFEMKPFEMSERERRDLVAFLETLKAEPAAITLPQLP
What is the function of this protein?
Involved in methylamine metabolism.  Essential for the maturation of the beta subunit of MADH, presumably via a step in the biosynthesis of tryptophan tryptophylquinone (TTQ), the cofactor of MADH.
What are the official names of this protein?
Methylamine utilization protein MauG.
What are the subcellular locations of this protein?
Periplasm.
Protein: RS12_SHELP
Sequence: MATVNQLVRKPRSPKVIKTNVPALNACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCAGVSERRQGRSKYGAKRPKS
What is the function of this protein?
Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone.  Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together.  The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
What are the official names of this protein?
30S ribosomal protein S12.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS12 family.
Protein: DPO4_STAAB
Sequence: MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDP
What is the function of this protein?
Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis.  Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends.  These misaligned primers can be extended by PolIV.  Exhibits no 3'-5' exonuclease (proofreading) activity.  May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
What are the official names of this protein?
DNA polymerase IV, Pol IV.
What is the protein family that this protein belongs to?
Belongs to the DNA polymerase type-Y family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RF1_HALMA
Sequence: MSEQQEQEQSDKQKYEFRKVIEELKGYQGSGTQLVSIYIPEGKLISDVVAHVTQEHSEASNIKSKDTRTAVQDALTSIKDRLRYYDVRPPDNGLVVFSGAFDTGGGRTDMVTKVLESPPDPIESFRYHCDSEFLTEPLEHMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVAGMANDLFVADRHEIDGILVGGPSPTKDEFLDGDYLHHELQDMVLGKFDVAYTDESGLYDLVDAADDVLAEHEMLRDKELMEDFFKQLHNGDKATYGFDQTRQNLNMGAVEQLLISEDLRKDVVAYTCENGHDEYDLINSSAGTDDHECSRCGATVDADDGEREDAIDHLMELADQRGTETVFISTDFEKGEQLLTAFGGVAGLLRYSTGV
What is the function of this protein?
Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
What are the official names of this protein?
Peptide chain release factor subunit 1, Translation termination factor aRF1.
What is the protein family that this protein belongs to?
Belongs to the eukaryotic release factor 1 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: ATPB_BART1
Sequence: MAKAVTSSKGAEKSEKKKPAARSGVKKDASKSKDASKSQVNVKISSAPARSAAKDTPVKKEERAKGTVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLMRGQKVVDTGAQISVPVGEATLGRIMNVIGEPVDNVGPIASTKTRSIHQEAPEYVEQSTVSEILVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYYEMIESGVNVNPKENNGSTEGSKCALVYGQMNEPPGARARVALSGLTIAESFRDEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGALQERITSTKIGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSFSRMLDPLIVGEEHYTVACQVQTILQRYRALQDIIAILGMDELSEDDKLLVGRARKIERFLSQPFHVAEAFTGSPGKLVSLEDTIKGFKGLCAGDYDDLPEAAFYMVGSIDEALEKGKRLMAEAS
What is the function of this protein?
Produces ATP from ADP in the presence of a proton gradient across the membrane.  The catalytic sites are hosted primarily by the beta subunits.
What are the official names of this protein?
ATP synthase subunit beta, ATP synthase F1 sector subunit beta, F-ATPase subunit beta.
What is the protein family that this protein belongs to?
Belongs to the ATPase alpha/beta chains family.
What are the subcellular locations of this protein?
Cell inner membrane; Peripheral membrane protein.
Protein: FXR1A_XENLA
Sequence: MEDMTVEVRGSNGAFYKGFVKDVHEDSLTVVFENNWQPERQVPFDEVRMPPLPDIKKEITEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKTVTKNSFFKCTVDVPEDLRESCSNENVHKEFKKAVGACRVYFHAETNQLIILSACESTVKRVNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLASAFHEEFIVREDLMGLAIGTHGSNIQQARKVPGITAIELDEDSGTFRIYGESAEAVKKARSYLEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNETKLPREDGMVPFVFVGTKENIGNVQVLLEYHIAYLKEVEQLRMERLQIDEQLRQIGMGFRPSSSRGTEKEKGYATDESTASSVRGSRSYSGRGRGRRGPNYTSGYGTNSELSNPSETESERKEELSDWSLAGEDERESRQQRDSRRRPGGRGRSGSAGRGRGGSRGGKSSISSVLKDPDSNPYSLLDNTESDQTADTDASESHHNTNRRRRSRRRRTDEDSSLMDGMTESDNASVNENGLDDSEQKPQRRNRSRRRRFRGQAEDRQPVTVADYISRAESQSRQRNLPKETLAKGKKEKVKDVIEEHGPSEKVINGPRASSADKASNPQTASTERNQASCQDGSKQEAIMNGVS
What is the function of this protein?
Not involved in somite development.
What are the official names of this protein?
RNA-binding protein fxr1-A, xFxr1p-A.
What is the protein family that this protein belongs to?
Belongs to the FMR1 family.
What are the subcellular locations of this protein?
Cytoplasm. Nucleus.
Protein: FIMG_ECOLI
Sequence: MKWCKRGYVLAAILALASATIQAADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS
What is the function of this protein?
Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae).  Involved in the integration of FimH in the fimbriae.
What are the official names of this protein?
Protein FimG.
What is the protein family that this protein belongs to?
Belongs to the fimbrial protein family.
What are the subcellular locations of this protein?
Fimbrium.
Protein: LIPB_PSEAE
Sequence: MGLELGFRELGEVPYEPTWHAMQRFVAERDKSVMDEAWLLQHPAVFTQGQAGKAEHVLFPGDIPVIQVDRGGQVTYHGPGQLVTYLLLDVRRLGLGVRELVSRIEQSLIGLLASYDVQAVAKPDAPGVYVDGAKIASLGLRIRNGCSFHGLALNLDMDLRPFQRINPCGYAGMPMTQLRDLVGPVDFAEVCTRLRAELVSRLGYAEQKTLTGGIELT
What is the function of this protein?
Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes.  Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
What are the official names of this protein?
Octanoyltransferase, Lipoate-protein ligase B, Lipoyl/octanoyl transferase, Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase.
What is the protein family that this protein belongs to?
Belongs to the LipB family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: ENO_EHRRW
Sequence: MANVKINNISARQILDSRGYPTIEVQITLSNNVFAKASIPSGASVGKFEAVELRDHDTNYYHGYGVTKAVNLINSEIGQKIIKLETLDQEKIDNALIEIDGTNNKSRVGANSILAISLAVAKAAASTLNIPLYQYLGGITAKILPTPLINIINGGMHADNNLDFQEFMIIPHGANSFEDAIRMSSEVFHTLKKILKQKQYNTNVGDEGGFAPNIKDNTEVFDIIIDAIEKSGYKVYKDFSLGLDVAASTFYKNEKYKFSDYQFSTHELVEYYKNIVTQYPIISLEDPIAEEDTLGWKMITKELGDKIQIVGDDLFVTNCKLIKNGIDNNMANAVLIKPNQIGTLTETLNAIRLAQKNNYNVILSHRSGETNDTTISHIAVAVNCGQIKTGSLSRSERLAKYNELLYIEKLLNTSAIYQGML
What is the function of this protein?
Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate.  It is essential for the degradation of carbohydrates via glycolysis.
What are the official names of this protein?
Enolase, 2-phospho-D-glycerate hydro-lyase, 2-phosphoglycerate dehydratase.
What is the protein family that this protein belongs to?
Belongs to the enolase family.
What are the subcellular locations of this protein?
Cytoplasm. Secreted. Cell surface. Note=Fractions of enolase are present in both the cytoplasm and on the cell surface. The export of enolase possibly depends on the covalent binding to the substrate; once secreted, it remains attached to the cell surface.
Protein: Y539_AQUAE
Sequence: MLRAYIFYRLVKNTLLTAFILSLILLTLQLTRLSNVLFGIPFKDFMGFLVVWNAYYTYFFIPEGVILSTFFLMKHFKDKKLLHVFYSFRISDFRIFLYCSIPFLTFFLISALLSNTLLEEKVAFTRKNMLFKLQEKFFSEVPAGTFVSFGAVVLHAEKREGNTLKEAFFKFGDITVLSEYLKYKGNGVFEFRRGTVITEEENYFVVKFNEYTLNLKQFQKKKLREKRLKESKVVNYVNVATLPLFFFLSFTVALKFCHGGLSYYAFASLFIVVHQLIIFVVKLML
What are the official names of this protein?
Uncharacterized protein aq_539.
What are the subcellular locations of this protein?
Cell membrane; Multi-pass membrane protein.
Protein: CTXL8_LEIHE
Sequence: RCSPCFTTDQQMTKKCYDCCGGKGKGKCYGPQCICAPY
What is the function of this protein?
Toxin with unknown function in healthy organisms.  On glioma cells, interacts with chloride channels (probably ClC-3/CLCN3) and MMP2 at the surface of glioma cells.  This complex is then internalized via caveolae, thus inhibiting the chloride channels necessary for cell shrinkage and tumor propagation.
What are the official names of this protein?
Toxin Lqh 8/6.
What is the protein family that this protein belongs to?
Belongs to the short scorpion toxin superfamily. Chloride channel inhibitor family.
What are the subcellular locations of this protein?
Secreted.
Protein: MINE_YERPA
Sequence: MALLDFFLSRKKPTANIAKERLQIIVAERRRGDSEPHYLPDLKRDILAVICKYIQIDPEMLHVQFEQKGDDISVLELNVTLPETEETPK
What is the function of this protein?
Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites.  This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
What are the official names of this protein?
Cell division topological specificity factor.
What is the protein family that this protein belongs to?
Belongs to the MinE family.
Protein: UPPP_SULIM
Sequence: MDYILIGVILGIVQGISEWIPISSKTQVLIVSSSLLGLSFSVAYSFGLFMEIGTIAAAIIYFRREISGLLKALVRMSSRREDYLLLKFLVIVTIITGLMGVPLYLFVISLPILGLPMTVLGVVLLTDGIIIYLSRKNYISRKGLHDLRLRDIIIVGIAQGLAALPGVSRSGITTSALILLGVKPEEAFKLSFISLIPAALGAIGVTVLFSKHEVSQAVHSVSLSGLLISIVVATFVSIFFINALLRFARTNKVVVLVIILGIIAIISGILSGIAKGFY
What is the function of this protein?
Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP).
What are the official names of this protein?
Undecaprenyl-diphosphatase, Undecaprenyl pyrophosphate phosphatase.
What is the protein family that this protein belongs to?
Belongs to the UppP family.
What are the subcellular locations of this protein?
Cell membrane; Multi-pass membrane protein.
Protein: PARP3_CHICK
Sequence: MAPKRRAPPASQPADGGKKAKGGQEEEEDAWSSALNALKTAPREKPPATIDGQCPLSAGPDAKVYEDYDCTLNQTNISANNNKFYIIQLIEHGGTYSTWNRWGRVGEVGQSKLLPFTSLEAAKKDFEKKFWEKTKNRWAARDNFVAQPGKYTLIEVQPGAGQEVALRVDGAGDEKVSKRRVLPCALDETTQKLVALIFSSDMFRHAMQAMNIDVKKMPLGKLSKQQIARGFEALEELEAALGEQPRSMSRLEELSSRFYTIVPHNFGRARPPPIDSPELLRAKKDMLLVLADIEVAQSLQAQKVEEEEVVAHPLDRDYALLCCQLTLLEDTSQEYEMILNYVAQTGGQVYVLNVWRVAREGEDKLFQAHDHLEHRRLLWHGTNVAVVAAILKNGLRIMPHSGGRVGKGIYFASENSKSACYVGCTSKRVGLMFLTEVALGKPYCITRDEPTLQQPPNGYDSVQACGRTEPDPAQDVEVTLDGKKVLVCQGKPIPMPAYKDSSFFQSEYLIYQESQCRIRYLVQLHF
What is the function of this protein?
Mono-ADP-ribosyltransferase that mediates mono-ADP-ribosylation of target proteins and plays a key role in the response to DNA damage (PubMed:27530147).  Mediates mono-ADP-ribosylation of glutamate, aspartate or lysine residues on target proteins (By similarity).  In contrast to PARP1 and PARP2, it is not able to mediate poly-ADP-ribosylation (By similarity).  Involved in DNA repair by mediating mono-ADP-ribosylation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism, such as histone H2B, XRCC5 and XRCC6 (By similarity).  ADP-ribosylation follows DNA damage and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity).  Involved in single-strand break repair by catalyzing mono-ADP-ribosylation of histone H2B on 'Glu-2' (H2BE2ADPr) of nucleosomes containing nicked DNA (PubMed:27530147).  Cooperates with the XRCC5-XRCC6 (Ku80-Ku70) heterodimer to limit end-resection thereby promoting accurate NHEJ (By similarity).  Associates with a number of DNA repair factors and is involved in the response to exogenous and endogenous DNA strand breaks (By similarity).  Together with APLF, promotes the retention of the LIG4-XRCC4 complex on chromatin and accelerate DNA ligation during non-homologous end-joining (NHEJ) (By similarity).  In addition to proteins, also able to ADP-ribosylate DNA: mediates DNA mono-ADP-ribosylation of DNA strand break termini via covalent addition of a single ADP-ribose moiety to a 5'- or 3'-terminal phosphate residues in DNA containing multiple strand breaks (By similarity).
What are the official names of this protein?
Protein mono-ADP-ribosyltransferase PARP3, cPARP3, ADP-ribosyltransferase diphtheria toxin-like 3, ARTD3, DNA ADP-ribosyltransferase PARP3, NAD(+) ADP-ribosyltransferase 3, ADPRT-3.
What is the protein family that this protein belongs to?
Belongs to the ARTD/PARP family.
Protein: PIMT_ECO81
Sequence: MVSRRVQALLDQLRAQGIQDELVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA
What is the function of this protein?
Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues.  It plays a role in the repair and/or degradation of damaged proteins.
What are the official names of this protein?
Protein-L-isoaspartate O-methyltransferase, L-isoaspartyl protein carboxyl methyltransferase, Protein L-isoaspartyl methyltransferase, Protein-beta-aspartate methyltransferase, PIMT.
What is the protein family that this protein belongs to?
Belongs to the methyltransferase superfamily. L-isoaspartyl/D-aspartyl protein methyltransferase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: Y516_MACCJ
Sequence: MSNEDTYKRLVVVTGMSGAGKSVAIQCLEDLGYFCVDNLPPILLPKFIELMNNNTESLSRVAIGIDLRGKDFFNSLQEEIQNIINLNEVLVQVLFVEASDHILVSRYKETRRTHPLQDNISLIDAIQEERKLLADLRGVATHIIDSSESKPKALRSKVIEIFGSGKDNIFTINVMSFGFKHGLPIDADIVFDVRFLPNPYYIEEMRKLTGLDPLVYDYVMKWKETEMFYQKLIDLLKFVIPGYMREGKSQVVIAIGCTGGQHRSVALSERISNELKDFFDFELHTRHRDALIEGTINEKA
What is the function of this protein?
Displays ATPase and GTPase activities.
What are the official names of this protein?
Nucleotide-binding protein MCCL_0516.
What is the protein family that this protein belongs to?
Belongs to the RapZ-like family.
Protein: RL1_SALSV
Sequence: MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVDQAGLSASAN
What is the function of this protein?
Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.
What are the official names of this protein?
50S ribosomal protein L1.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL1 family.
Protein: HA34_BRELC
Sequence: MKFSQILVLAAIAVAAISAQDAAPATTPDTATATTPAAATTTTTTTTPAADAGTASTEQTTTAGPEAAGATNGTTTTPPADGTQTATAPLDATATEESSASGEMTPTVGTDTSDQVSDSTAAGPSTPEGSMTGTSTPKASDSSSSATDTTSGASHTTMAVACATVMTVGAYFL
What is the function of this protein?
Could be a structural protein required for the infection process of B. lactucae.
What are the official names of this protein?
HAM34 protein.
Protein: DDL_LEVBA
Sequence: METKTKLHVGLLFGGNSSEHDVSKRSAHNIYDAMDKDRYNVSLFLLTRDGFVLSDAASRRVFDGEDEATVAAEEQAKVDASNPLAPIWNLSQAKDIDVFFPIIHGNLGEDGTIQGLFRLLKKPFVGSGVLASAVSFDKDMTKQVLTAHGIRNTKYVVLTPDNRADFDYATIQSRLGDNVFIKPANQGSSVGIHKASNVQEYLDGVADAFRYDYKVLVEQTIDGPQEVEISILGNEQPQASKLGAIRVPESDVFYDYNNKFVDASGVTFEVPVKLSDELTQEITQMGLQTYAALGLKGMARIDYLVSKDGVPYVGEVNTLPGFTNISLYPQLWQATGINYADLIDRLIELALSEFHYQDELAYDFIPLDDHSAASTYKPKA
What is the function of this protein?
Cell wall formation.
What are the official names of this protein?
D-alanine--D-alanine ligase, D-Ala-D-Ala ligase, D-alanylalanine synthetase.
What is the protein family that this protein belongs to?
Belongs to the D-alanine--D-alanine ligase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: MSRP_HISS2
Sequence: MKKLTSNDVTPEEIFYQRRKIIKAFGLSAVATALPTFSFAQESSDLKALEYKKSTESTLILTPENKVTGYNNFYEFGVDKGSPAHYAKKFQVNPWKLEIGGEVENPFTLNYDQLFTQFPLEERIYRFRCVEAWAMVVPWIGFELNKLLEKAKPTSKAKYVVFHTLYDPEQMPGQKNHFFGGGIHYPYVEALTLAEAMHSLTLMSVGLYGKALAPQNGAPIRLVVPWKYGFKSIKSIVKITLSETRPRTTWESLAPNEYGFYANVNPKVDHPRWSQASERVIGAGGLLRVKRQPTLMFNGYEREVAHLYKGLDLRINY
What is the function of this protein?
Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons.  Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms.  MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation.  The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide.
What are the official names of this protein?
Protein-methionine-sulfoxide reductase catalytic subunit MsrP.
What is the protein family that this protein belongs to?
Belongs to the MsrP family.
What are the subcellular locations of this protein?
Periplasm. Note=Is attached to the inner membrane when interacting with the MsrQ subunit.
Protein: EFP_CROS8
Sequence: MATYSSNDFRAGLKIMMDGEPYAVESSEFVKPGKGQAFARVKLRRLLTGSRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLAADAKAVGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK
What is the function of this protein?
Involved in peptide bond synthesis.  Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome.  Modification of Lys-34 is required for alleviation.
What are the official names of this protein?
Elongation factor P, EF-P.
What is the protein family that this protein belongs to?
Belongs to the elongation factor P family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: PARB_XYLFA
Sequence: MNKPSPPLKKRGLGRGLEALLGSKGGSSVPPTVAEGQLPGEVLRTLQITQLQPSKYQPRREMSEPKLAELADSIKAQGVIQPIIVRELDVDMFEIVAGERRWRASQLAGLTEVPVLVRELDDRTVVAMALIENIQREDLNPLEEAQALQRLIDEFSLTHAEAAEAVGRSRAAVSNLLRLLELPLGIRTLLQSRRLEMGHARALLTLAPELADKLAKEAADQGWSVREVEHRAQQFAAGKVPDIRDKKSKSPASAPAQPDIASLETELSEHLGTKVAINHGRAGKGKLVIHYTDLDVLDGVLERLRARVAD
What is the function of this protein?
Involved in chromosome partition.  Localize to both poles of the predivisional cell following completion of DNA replication.  Binds to the DNA origin of replication (By similarity).
What are the official names of this protein?
Probable chromosome-partitioning protein ParB.
What is the protein family that this protein belongs to?
Belongs to the ParB family.
Protein: Y035_HIS1I
Sequence: MQVIEHKKSGKVHIPPENGKGLVLCGSRMIQDCQEMATFRDSQWLDDFPEDYGDSQKDCEKCAKITDFNE
What are the official names of this protein?
Uncharacterized protein ORF35.
Protein: COX5A_PLEDO
Sequence: MLGAALRRCAVAAAARAGPRGLLHSAPTPGPAAAIQSVRCYSHGSSETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDLVPEPKIIDAALRACRRLNDFASTVRILEAVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV
What is the function of this protein?
Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation.  The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol-cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and the ATP synthase.  Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water.  Electrons originating from reduced cytochrome c in the intermembrane space (IMS) are transferred via the dinuclear copper A center (CU(A)) of subunit 2 and heme A of subunit 1 to the active site in subunit 1, a binuclear center (BNC) formed by heme A3 and copper B (CU(B)).  The BNC reduces molecular oxygen to 2 water molecules using 4 electrons from cytochrome c in the IMS and 4 protons from the mitochondrial matrix.
What are the official names of this protein?
Cytochrome c oxidase subunit 5A, mitochondrial, Cytochrome c oxidase polypeptide Va.
What is the protein family that this protein belongs to?
Belongs to the cytochrome c oxidase subunit 5A family.
What are the subcellular locations of this protein?
Mitochondrion inner membrane; Peripheral membrane protein; Matrix side.