PharMolix/UniProtQA huggingface dataset:
Protein: FIXC_SALTI
Sequence: MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLERIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNVVQRDGKVVGVEADGDILEAKVVILADGVNSLLAEKLGMAKRVEASHVAVGVKELIELPKSVIEDRFQLQGNEGAACLFAGAPTDGLMGGGFLYTNETTLSLGLVCGLHHLKDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYAAHVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAAAKTVLSAMKRDDFSKQSLGEYRQHLDEGPMRDMRMYQKLPAFLDNPRMFTAYPEMAVSIARDLFTVDGSAPVPMRKKILRHAKKVGFINLMKDGLKGVTVL
What is the function of this protein?
Could be part of an electron transfer system required for anaerobic carnitine reduction.
What are the official names of this protein?
Protein FixC.
What is the protein family that this protein belongs to?
Belongs to the ETF-QO/FixC family.
Protein: PHOU1_METTH
Sequence: MEKKYPRILFRKRLKDLRKDMEEVSQKTLKTHKLAVDLLMEYDEEKKEKVIKNSRAIDDMVFNLERKAISLIAAEQPVAGDLRFIEACIKVGSHLKRIGYLAANIAEAAEKLKDEEIPRRPLEDLKHMSDFVQMMLSKGIYAFLDQNMEMARELRHDDDKVDDLFDQTLEHVTRSMFEDKESISYLVNLLFIARFLERVGDRAVSIADRTIFMITCEKP
What is the function of this protein?
Plays a role in the regulation of phosphate uptake.
What are the official names of this protein?
Phosphate-specific transport system accessory protein PhoU homolog 1, Pst system accessory protein PhoU 1 homolog.
What is the protein family that this protein belongs to?
Belongs to the PhoU family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: FTSH2_SYNY3
Sequence: MKFSWRTALLWSLPLLVVGFFFWQGSFGGADANLGSNTANTRMTYGRFLEYVDAGRITSVDLYENGRTAIVQVSDPEVDRTLRSRVDLPTNAPELIARLRDSNIRLDSHPVRNNGMVWGFVGNLIFPVLLIASLFFLFRRSSNMPGGPGQAMNFGKSKARFQMDAKTGVMFDDVAGIDEAKEELQEVVTFLKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAITLLEIDDAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAIVGTLLKDHDPVQKVTLIPRGQAQGLTWFTPNEEQGLTTKAQLMARIAGAMGGRAAEEEVFGDDEVTTGAGGDLQQVTEMARQMVTRFGMSNLGPISLESSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRLVDLLIEKETIDGEEFRQIVAEYAEVPVKEQLIPQL
What is the function of this protein?
Plays a role in the selective replacement of photosystem II (PSII) protein D1 in the PSII repair cycle following visible-light and UV-B induced damage.  If damaged D1 is not removed then new D1 cannot be inserted to restore the PSII reaction center.  Seems to also degrade damaged and/or unassembled PSII proteins D2 and PsbB (CP47).  May recognize D1 via its first 20 amino acids, as deletion of these prevents the PSII repair cycle.  Also seems to degrade cytoplasmic GGPS, glucosylglycerol-phosphate synthase.
What are the official names of this protein?
ATP-dependent zinc metalloprotease FtsH 2.
What is the protein family that this protein belongs to?
In the C-terminal section; belongs to the peptidase M41 family.
What are the subcellular locations of this protein?
Cellular thylakoid membrane; Multi-pass membrane protein; Stromal side. Note=A fraction is found associated with PSII. Localization to the cell inner membrane has been specifically tested and not seen.
Protein: SDF1_HUMAN
Sequence: MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKRFKM
What is the function of this protein?
Chemoattractant active on T-lymphocytes and monocytes but not neutrophils.  Activates the C-X-C chemokine receptor CXCR4 to induce a rapid and transient rise in the level of intracellular calcium ions and chemotaxis.  SDF-1-beta(3-72) and SDF-1-alpha(3-67) show a reduced chemotactic activity.  Binding to cell surface proteoglycans seems to inhibit formation of SDF-1-alpha(3-67) and thus to preserve activity on local sites.  Also binds to atypical chemokine receptor ACKR3, which activates the beta-arrestin pathway and acts as a scavenger receptor for SDF-1.  Binds to the allosteric site (site 2) of integrins and activates integrins ITGAV:ITGB3, ITGA4:ITGB1 and ITGA5:ITGB1 in a CXCR4-independent manner (PubMed:29301984).  Acts as a positive regulator of monocyte migration and a negative regulator of monocyte adhesion via the LYN kinase.  Stimulates migration of monocytes and T-lymphocytes through its receptors, CXCR4 and ACKR3, and decreases monocyte adherence to surfaces coated with ICAM-1, a ligand for beta-2 integrins.  SDF1A/CXCR4 signaling axis inhibits beta-2 integrin LFA-1 mediated adhesion of monocytes to ICAM-1 through LYN kinase.  Inhibits CXCR4-mediated infection by T-cell line-adapted HIV-1.  Plays a protective role after myocardial infarction.  Induces down-regulation and internalization of ACKR3 expressed in various cells.  Has several critical functions during embryonic development; required for B-cell lymphopoiesis, myelopoiesis in bone marrow and heart ventricular septum formation.  Stimulates the proliferation of bone marrow-derived B-cell progenitors in the presence of IL7 as well as growth of stromal cell-dependent pre-B-cells (By similarity).
What are the official names of this protein?
Stromal cell-derived factor 1, SDF-1, hSDF-1, C-X-C motif chemokine 12, Intercrine reduced in hepatomas, IRH, hIRH, Pre-B cell growth-stimulating factor, PBSF.
What is the protein family that this protein belongs to?
Belongs to the intercrine alpha (chemokine CxC) family.
What are the subcellular locations of this protein?
Secreted.
Protein: OB76A_DROME
Sequence: MKHWKRRSSAVFAIVLQVLVLLLPDPAVAMTMEQFLTSLDMIRSGCAPKFKLKTEDLDRLRVGDFNFPPSQDLMCYTKCVSLMAGTVNKKGEFNAPKALAQLPHLVPPEMMEMSRKSVEACRDTHKQFKESCERVYQTAKCFSENADGQFMWP
What is the function of this protein?
Odorant-binding protein required for olfactory behavior and for activity of pheromone-sensitive neurons.  Binds to alcohols and mediates avoidance behavior to high concentrations of alcohols, the alcohol-binding possibly resulting in activation of receptors on T2B neurons, the activation of these receptors inhibiting these neurons.  Acts in concert with Snmp and lush to capture cVA molecules on the surface of Or67d expressing olfactory dendrites and facilitate their transfer to the odorant-receptor Orco complex.  Required for cVA response, probably by binding to VA.  May act by serving as an adapter that bridges the presence of gaseous pheromone molecules, cVA, to activation of specific neuronal receptors expressed on T1 olfactory neurons, possibly via a specific conformational change induced by cVA that in turn activates T1 receptors.  T1 neurons are excited by the pheromone VA, while T2 neurons are inhibited by alcohols.  Also binds to phthalates.
What are the official names of this protein?
General odorant-binding protein lush.
What is the protein family that this protein belongs to?
Belongs to the PBP/GOBP family.
What are the subcellular locations of this protein?
Secreted.
Protein: HLDD_FUSNN
Sequence: MIIVTGGAGMIGSAFVWKLNEMGIKDILIVDKLRKEDKWLNIRKREYYDWIDKDNLKEWLVCKENADNIEAVIHMGACSATTETDADFLMDNNFGYTKFLWNFCAEKNIKYIYASSAATYGMGELGYNDDVSPEELQKLMPLNKYGYSKKFFDDWAFKQKNQPKQWNGLKFFNVYGPQEYHKGRMASMVFHTYNQYKENGYVKLFKSYKEGFKDGEQLRDFVYVKDVVDIMYFMLVNDVKSGIYNIGTGKARSFMDLSMATMRAASHNDNLDKNEVVKLIEMPEDLQGRYQYFTEAKINKLREIGYTKEMHSLEEGVKDYVQNYLAKEDSYL
What is the function of this protein?
Catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose.
What are the official names of this protein?
ADP-L-glycero-D-manno-heptose-6-epimerase, ADP-L-glycero-beta-D-manno-heptose-6-epimerase, ADP-glyceromanno-heptose 6-epimerase, ADP-hep 6-epimerase, AGME.
What is the protein family that this protein belongs to?
Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
Protein: Y1547_MYCBO
Sequence: MSIVSISYNQEEYIREALDGFAAQRTEFPVEVIIADDASTDATPRIIGEYAARYPQLFRPILRQTNIGVHANFKDVLSAARGEYLALCEGDDYWTDPLKLSKQVKYLDRHPETTVCFHPVRVIYEDGAKDSEFPPLSWRRDLSVDALLARNFIQTNSVVYRRQPSYDDIPANVMPIDWYLHVRHAVGGEIAMLPETMAVYRRHAHGIWHSAYTDRRKFWETRGHGMAATLEAMLDLVHGHREREAIVGEVSAWVLREIGKTPGRQGRALLLKSIADHPRMTMLSLQHRWAQTPWRRFKRRLSTELSSLAALAYATRRRALEGRDGGYRETTSPPTGRGRNVRGSHA
What are the official names of this protein?
Uncharacterized protein Mb1547.
Protein: DEF_PELTS
Sequence: MAVYKIVELGDRILKERAKEVPKINQNIIKLLDNMAETMYHARGVGLAAPQIGVSKRVIVVDVGEGLLEMINPVITSCAGHETDSEGCLSIPGIVGDVTRASVIEVKGLDRRGKPLEVKAKGYLARALQHEIDHLDGILFIEKAKNIRKLVPKED
What is the function of this protein?
Removes the formyl group from the N-terminal Met of newly synthesized proteins.  Requires at least a dipeptide for an efficient rate of reaction.  N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
What are the official names of this protein?
Peptide deformylase, PDF, Polypeptide deformylase.
What is the protein family that this protein belongs to?
Belongs to the polypeptide deformylase family.
Protein: RL40_PYRHO
Sequence: MARFPEAEARIFKKYICLRCGATNPWGAEKCRKCGYKRLRPKAREPRGGGR
What are the official names of this protein?
50S ribosomal protein L40e.
What is the protein family that this protein belongs to?
Belongs to the eukaryotic ribosomal protein eL40 family.
Protein: RLMKL_XYLF2
Sequence: MRFFVSCAKGLEYLLVDEVLALGAAGATATVAGVNVEGGLCDAQRLVLWSRLASRVLWPLAAFACADEDALYAGVAALPWVEHVLPGQTLAVDAHVSGEAITHARYAAQRVKDAVVDTLRDAGVVRPSVDVEHPDVRLNLSLRKGRATLSVDLGGRALHHRGWRQAPHAASLKEHLAAAVLLRAGWAKVYAEGGGLLDPMCGSGTLLIEGALMVADVAPGLSRYADPDAMSHVSVAERPVLLPSRWRGFDVVAWEALVVDAQQRARRGLAELRPVLHGSDIDPRALGAAFANARAAGVQDAIEFVVAGIDVLPAVSEPHGVVVCNAPYDVRLAADPGLYRHLGDALRRVVPRWRAALVCGSSTLAFATGLRADKKYQFFNGALECVLIVCDPVVPLAREAGGAQALSEGAQMAANRLRKNVQRLKKWRIRAGVECYRVYDADLPEYAAAIDVYQEVDGARRLFLHVQEYAAPASIPEGDVRRRRHELLAAVRAVFDVSVAQVALKTRQRGKGGSQYGCFAQRGEFFHVCEHGALLRVNLFDYLDTGLFLDHRPLRGRMAREAVGKRFLNVFCYTGVASVEAAVAGAAATTSVDLSSTYLHWCTDNFALNGQGGVRHRLVQADALAWLEAERGQYDVIFCDPPTFSNSARADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFAQCEEISPVTIDLDFSRNTRIHRTWLLWR
What is the function of this protein?
Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA.
What are the official names of this protein?
Ribosomal RNA large subunit methyltransferase K/L.
What is the protein family that this protein belongs to?
Belongs to the methyltransferase superfamily. RlmKL family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: TYSY2_BACSU
Sequence: MKQYKDFCRHVLEHGEKKGDRTGTGTISTFGYQMRFNLREGFPMLTTKKLHFKSIAHELLWFLKGDTNVRYLQENGVRIWNEWADENGELGPVYGSQWRSWRGADGETIDQISRLIEDIKTNPNSRRLIVSAWNVGEIDKMALPPCHCLFQFYVSDGKLSCQLYQRSADVFLGVPFNIASYALLTMIIAHVTGLEPGEFIHTFGDVHIYQNHIEQVNLQLERDVRPLPQLRFARKVDSIFNFAFEDFIIEDYDPHPHIKGAVSV
What is the function of this protein?
Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product.  This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
What are the official names of this protein?
Thymidylate synthase 2, TS 2, TSase 2, Thymidylate synthase A, TS A, TSase A.
What is the protein family that this protein belongs to?
Belongs to the thymidylate synthase family. Bacterial-type ThyA subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: FENR_CHLCH
Sequence: MTLNHFYCSIEEEIRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAAGLVDTLWKQAERHHPEIILNETVMRYHKRDNGMFEVSVSSGHTYVSRAVLIAAGLGAFTPRKLPQLENIEALEGKSIFYAVKNVADFTGKHVVIVGGGDSALDWSVGLLKSAASVTLVHRMHEFQGHGKTAHEVMEARDAGRLNVMLDTEVMGIDVENEELKAVHVQSKNGKTRTFPADRLLLLIGFKSNIGPLAEWGLEIVDNALVVDSHMKTSVDGLYAAGDIAYYTGKLKIIQTGLSDATMAVRHSLHYIKPGEKIKHTFSSVKMAKEKKKGMQNG
What are the official names of this protein?
Ferredoxin--NADP reductase, FNR, Fd-NADP(+) reductase.
What is the protein family that this protein belongs to?
Belongs to the ferredoxin--NADP reductase type 2 family.
Protein: RK32_PANGI
Sequence: MAVPKKRTSISKKRIRKNIWKRKGYWAALKALSLGKSLSTGNSKGFFVRQTNKS
What are the official names of this protein?
50S ribosomal protein L32, chloroplastic.
What is the protein family that this protein belongs to?
Belongs to the bacterial ribosomal protein bL32 family.
What are the subcellular locations of this protein?
Plastid, chloroplast.
Protein: RL14_LACP7
Sequence: MIQSESRLKVADNSGAKELLCIRVMGGSTRRYANIGDIIVASVKDATPGGVVKKGDVVKAVVVRTVKGARRKDGSYIRFDENAAVIIKDDKNPKGTRIFGPVARELREKQFMKIVSLAPEVL
What is the function of this protein?
Binds to 23S rRNA.  Forms part of two intersubunit bridges in the 70S ribosome.
What are the official names of this protein?
50S ribosomal protein L14.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL14 family.
Protein: RNPH_BACCZ
Sequence: MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALGDIVSHIE
What is the function of this protein?
Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation.  Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important.  Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
What are the official names of this protein?
Ribonuclease PH, RNase PH, tRNA nucleotidyltransferase.
What is the protein family that this protein belongs to?
Belongs to the RNase PH family.
Protein: DMD4_CAEEL
Sequence: MMIGNLHVFPNGRIERERKPKCARCRNHGLVSWLKGHKRHCKYKECACEKCNLIAERQRVMAAQVALKRRQATEDAIALGLRVVAGQAIDRLPQGPVWNTAGGEDEDMDYLDEEIEEKPPTPVSEELVPLKRKKVEETYELSSFSPIELLMTLFCEHEKHVLELVLEACHGNVLQAIEHFANVRRVKNINQMKLFAAATRMDHVFPNMTNFILPKQSFLIDSLLEQPTFPVSSQASTSTKTCDSSSVDSISPNSSTFESS
What is the function of this protein?
Probable transcription factor, involved in regulation of sexually dimorphic synaptic connectivity and behavior (PubMed:33021200).  Promotes pruning of phasmid neuron synaptic connections in hermaphrodite animals during sexual maturation (PubMed:33021200).
What are the official names of this protein?
Doublesex- and mab-3-related transcription factor dmd-4.
What is the protein family that this protein belongs to?
Belongs to the DMRT family.
What are the subcellular locations of this protein?
Nucleus.
Protein: RS3_ACAM1
Sequence: MGQKIHPTGFRLGITQDHWSRWFADTDRYPELLQEDFKVRNYVNKNLSNAGIAGVRIERKADQIDLEVRTARPGVVVGRGGSGIESLRVGLQKELGDDRPIRINVVEVARVDAEATLIAEYIVQQLVRRVSFRRVVRQAIQRAQRAGVEGIKIQVGGRLNGAEIARSEWTREGRVPLHTLRANIDYSYRTASTTYGILGVKVWVFKGEVIPGADEQPTNREPQQRRRQQQRRRQQFEDRSE
What is the function of this protein?
Binds the lower part of the 30S subunit head.  Binds mRNA in the 70S ribosome, positioning it for translation.
What are the official names of this protein?
30S ribosomal protein S3.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS3 family.
Protein: TFDD1_CUPPJ
Sequence: MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYSEGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTDAFNVSGALQTMARAVTGNASAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIEQPVGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKVRQYARVS
What are the official names of this protein?
Chloromuconate cycloisomerase, Muconate cycloisomerase II.
What is the protein family that this protein belongs to?
Belongs to the mandelate racemase/muconate lactonizing enzyme family.
Protein: IRT3_ARATH
Sequence: MFFVDVLWKLVPLYLFGSETKSLSATESILQIVPEAMAATSSNVLCNASESDLCRDDSAAFLLKFVAIASILLAGAAGVTIPLIGRNRRFLQTDGNLFVTAKAFAAGVILATGFVHMLAGGTEALKNPCLPDFPWSKFPFPGFFAMIAALITLFVDFMGTQYYERKQEREASESVEPFGREQSPGIVVPMIGEGTNDGKVFGEEDSGGIHIVGIHAHAAHHRHSHPPGHDSCEGHSKIDIGHAHAHGHGHGHGHGHVHGGLDAVNGARHIVVSQVLELGIVSHSIIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFALTTPIGIGIGTAVASSFNSHSVGALVTEGILDSLSAGILVYMALVDLIAADFLSTKMRCNFRLQIVSYVMLFLGAGLMSSLAIWA
What is the function of this protein?
May play a role in the transport of iron in the plastids.
What are the official names of this protein?
Fe(2+) transport protein 3, chloroplastic, Fe(II) transport protein 3, Iron-regulated transporter 3.
What is the protein family that this protein belongs to?
Belongs to the ZIP transporter (TC 2.A.5) family.
What are the subcellular locations of this protein?
Plastid, chloroplast thylakoid membrane; Multi-pass membrane protein.
Protein: HUTH_SALG2
Sequence: MNTMTLTPGQLSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGVGDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARWQGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHKVQDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEPVAMAADNLALAIAEIGALSERRIALMMDKHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALAHPHSVDSLPTSANQEDHVSMAPAAGRLLWEMAANTRGIIAVEWLAACQGIDLREGLTSSPLLEQARQTLREQVAHYTQDRFFAPDIECATALLAQGALQRLVPDFM
What are the official names of this protein?
Histidine ammonia-lyase, Histidase.
What is the protein family that this protein belongs to?
Belongs to the PAL/histidase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RS12_AGRRK
Sequence: MPTVNQLIRKPRQAQVKRNKVPALQENPQKRGVCTRVYTTTPKKPNSALRKVAKIRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVKNRKQRRSKYGAKRPK
What is the function of this protein?
Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone.  Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together.  The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
What are the official names of this protein?
30S ribosomal protein S12.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS12 family.
Protein: RL3_STAAN
Sequence: MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKKGNK
What is the function of this protein?
One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
What are the official names of this protein?
50S ribosomal protein L3.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL3 family.
Protein: USF2_HUMAN
Sequence: MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVGVDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTAVSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEGTRQ
What is the function of this protein?
Transcription factor that binds to a symmetrical DNA sequence (E-boxes) (5'-CACGTG-3') that is found in a variety of viral and cellular promoters.
What are the official names of this protein?
Upstream stimulatory factor 2, Class B basic helix-loop-helix protein 12, bHLHb12, FOS-interacting protein, FIP, Major late transcription factor 2, Upstream transcription factor 2.
Protein: EFP_PAEAT
Sequence: MATTNDIKNGTVLKLEGQLWNIIEFQHVKPGKGGAFVRTKMRNVMSGKVVDKTFNAGLKIETATVDRRDYQYLYQDGEDFVFMDTQDYDQITVSGATVGDATNFMLENQMVNIAIHEGTPLYIELPPSVVLEITYTEPGLQGDRSSAGTKPATVETGYEIQVPLFVEQGTKVKVDTRDGSYLGRVND
What is the function of this protein?
Involved in peptide bond synthesis.  Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro.  Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
What are the official names of this protein?
Elongation factor P, EF-P.
What is the protein family that this protein belongs to?
Belongs to the elongation factor P family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: HBX6_DICDI
Sequence: MDKCVITGHHFSVENMNHNNNNYDFDNKNNSIGGGGGGGGSSSSRSSSSRSSSNRSSSGSSGGSGSNSSSSINNIINSDNDFKTERKQTKSPPLTLPNIKTTTTTTTTTTTTTTTTTKNENISSSESENSSSRVGSPNCNKKVKKTKTITISPTGYNINSKDDINKFTTYGYTNEKSNARRDPKWINDIIERYNRLKSESLNNNYNGSSSNNNNINNINNNSNNTTSPCQSPSSNTATITSISSPTSSSSSLSSPSFSINNIVNQDVDENDGCDRMNYTLLSQNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTNNNGDECIVKPISLIQNKKSGQRSLKTKEHKEILEALYRVTLYPTSEETKTISQILGMTFGQVKSSFRHRREKLSKSGLFSYAKNLKNCGKSTAPLDNFFENCKYLTTKETEEFAAAYDVSFEQIKNYFKGKRAKLNKLSSKAIQDKDNQDNDNNNSNNNENNDDSYSDEGLF
What is the function of this protein?
Putative transcription factor.
What are the official names of this protein?
Homeobox protein 6, DdHbx-6.
What are the subcellular locations of this protein?
Nucleus.
Protein: OPGH_RALSO
Sequence: MELPATSGLNAQPGNAEGTTASTRPATALSVAERYLEALPLPAEARAALRREAGIEPADKDAVALAKLHRALARLDAAQTASIEGSVPAYASIGSRLDAAYGTPHAGTATPEPAPPLEHDTAGRIHLDTGPEPARRSMVPWPWVLGPIWRARRAIGRLFSGGTAPVPYEQPDSPDPKGIWRFVGARRRLTLLALMIAQTVAATWAMSSVLPYHGHDWLEAIIIALFALLFCWVSAGFWTAITGFLLLAFHGDRFVISRRAAPNAPIPDDARTAIVMPICNEDVQRVFAGLRATYESLQRTGHLEHFDFFVLSDSGDPDIRTAEADAWLHVCRALDGFGRVFYRWRRHRVKRKSGNIDDFCRRWGGRYRYMIVLDADSVMSGDCLTRLVQLMEGAPSAGIIQTAPLAAGRDTLYARIQQFATRVYGPLFTAGLHYWQLGESHYWGHNAIIRLEPFIKHCALAPIPGKGSLSGEIMSHDFVEAALMRRAGWAVWIAYDLDGSYEEMPPNLLDELGRDRRWCHGNLMNFRLFGSPGFHPVHRAVFVTGVMAYLSAPLWFLFLLLSTALLAKHTLIAPEYFTQPRQLFPIWPEWHPEKAAALFSATATVLFLPKILSVLVLWAKGPRRFGGAVHLALSMVIEAVFSVLAAPVRMLFHTRFVTAAFLGWKVHWKSPPRDDAQTHWGDAVRRHGLHTLLGLGWAALVYWLNPSFLWWLSPVVGALIVSILLSVFSSRVTLGRGMRRWRLFMIPEEVRPPRELRAMRKHLRQAPPTPDFRLAVVDPVTNALMCAIGTARFPHDPKLLEVRDATVLQALAAGPDKLTSKQKLVLLSDPLALSALHLAVWSSDVHRAAWLPANALASKAAA
What is the function of this protein?
Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
What are the official names of this protein?
Glucans biosynthesis glucosyltransferase H.
What is the protein family that this protein belongs to?
Belongs to the glycosyltransferase 2 family. OpgH subfamily.
What are the subcellular locations of this protein?
Cell inner membrane; Multi-pass membrane protein.
Protein: RECR_STAAR
Sequence: MHYPEPISKLINSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRSVICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLVKPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM
What is the function of this protein?
May play a role in DNA repair.  It seems to be involved in an RecBC-independent recombinational process of DNA repair.  It may act with RecF and RecO.
What are the official names of this protein?
Recombination protein RecR.
What is the protein family that this protein belongs to?
Belongs to the RecR family.
Protein: SCPB_STAA1
Sequence: MDNHGILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSHGLMIQRFGTTYVLTTKKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLIAKGLVEAKVVNEQRSQQLITTDLFLNVFGISNIEDLPTTEEDDEEMDAFFSNLVNQKGENND
What is the function of this protein?
Participates in chromosomal partition during cell division.  May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
What are the official names of this protein?
Segregation and condensation protein B.
What is the protein family that this protein belongs to?
Belongs to the ScpB family.
What are the subcellular locations of this protein?
Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells.