PharMolix/UniProtQA huggingface dataset:
Protein: NDK_BRUA2
Sequence: MAIERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWFSGTEIVG
What is the function of this protein?
Major role in the synthesis of nucleoside triphosphates other than ATP.  The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
What are the official names of this protein?
Nucleoside diphosphate kinase, NDK, NDP kinase, Nucleoside-2-P kinase.
What is the protein family that this protein belongs to?
Belongs to the NDK family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RL13_RALSO
Sequence: MKTFSAKPHEVKRNWFVIDATDKVLGRVASEVALRLRGKHKPEFTPHVDTGDFIIVINAAKLRVTGAKTTDKKYYRHSGYPGGIYETTFGKMQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEGSHPHEAQQPQVLEI
What is the function of this protein?
This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself.  It is important during the early stages of 50S assembly.
What are the official names of this protein?
50S ribosomal protein L13.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL13 family.
Protein: RL6_MYCTO
Sequence: MSRIGKQPIPVPAGVDVTIEGQSISVKGPKGTLGLTVAEPIKVARNDDGAIVVTRPDDERRNRSLHGLSRTLVSNLVTGVTQGYTTKMEIFGVGYRVQLKGSNLEFALGYSHPVVIEAPEGITFAVQAPTKFTVSGIDKQKVGQIAANIRRLRRPDPYKGKGVRYEGEQIRRKVGKTGK
What is the function of this protein?
This protein binds to the 23S rRNA, and is important in its secondary structure.  It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
What are the official names of this protein?
50S ribosomal protein L6.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL6 family.
Protein: PSD_GEOUR
Sequence: MRNKNTPIAAEGYPFVAIAGFITVVLALLAWKVLAAFFLVVTLFVVFFFRNPQRITPGDENAVVSPADGVVIYLGNARESHLDEEMMKISIFMSVFNVHINRVPVSGRVVDRFYLPGKFLDVRDERATFENEQNGLVLETARGVKMVVVQVAGLIARRIVCYPKIGDMLQRGQRYGLIRFGSRLDVYLPKNVELRVSMGDKTVAGETILGILP
What is the function of this protein?
Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
What are the official names of this protein?
Phosphatidylserine decarboxylase proenzyme.
What is the protein family that this protein belongs to?
Belongs to the phosphatidylserine decarboxylase family. PSD-A subfamily.
What are the subcellular locations of this protein?
Cell membrane; Peripheral membrane protein.
Protein: ASP1_STAA8
Sequence: MKYFIPAWYDDQRWWQDTTVPYYQLQNKTEFDDMISLMGMHLENDLDYQLIVLNHAPNLRTFLHRYDLYETKYSSVFDEIQGFSHHAPQAINYHHLKWPDDVEFVYTPYLLKCVTSEQTYTNIYFSQEGYSIWFEEFERDQLQRRYIFDDRGYLSAIRYFDDQGEASYQEYLTINGDCVLHEDLKNGRVTVSKRYQHHYQQTEYNNMAQLIEEKFQAMIAQQIHEDDHVIVASDARHNRQIANHIPAKSLSYSFFKNRNETVSDEEYQSIVKNAHLIVDSVQLERDLISHQEKYQRENTMIRITPFETRQSPNISSQLMETFIGVWIDGMSDADLQQMMQRLVDYIAQEDYYRLILLSRHQNDIPMWLRECITSVNEEYQAKQNADVNVSALMTPEDQDDIIAVKTIHAEHDVVEALRTLRLVIDMSKEPDLYLQISAISAGIPQINGQQTDYVSDYDNGRIINTVDELDDALNYYLFYLKNWNYAYAYSLKLIDAYASKNIINQLDELIEGENDAT
What is the function of this protein?
Part of the accessory SecA2/SecY2 system specifically required to export SraP, a serine-rich repeat cell wall protein encoded upstream in the same operon.
What are the official names of this protein?
Accessory Sec system protein Asp1, Accessory secretory protein Asp1.
What is the protein family that this protein belongs to?
Belongs to the accessory Sec system protein Asp1 family.
Protein: 4HYPE_BRUC2
Sequence: MARHSFFCVDGHTCGNPVRLVAGGGPNLNGSTMMEKRAHFLAEYDWIRTGLMFEPRGHDMMSGSILYPPTRPDCDVAVLFIETSGCLPMCGHGTIGTVTMAIEQGLVTPKTPGKLNLDTPAGLVAIEYEQDGQYVERVRLTNVPAFLYAEGLEVECPDLGPIKVDVAYGGNFYAIVEPQENYTDMDDYSALQLIAWSPVLRQRLNEKYKFQHPELPDINRLSHILWTGKPKHPQAHARNAVFYGDKAIDRSPCGTGTSARMAQLAAKGKLKPGDEFIHESIIGSLFHGRVERAAEVAGRPAIVPSIAGWARMTGYNTIFIDDRDPFAHGFSVA
What is the function of this protein?
Allows intracellular utilization of 4-hydroxyproline, one of the major constituents of host collagen, by converting 4-hydroxy-L-proline to 4-hydroxy-D-proline, which can be further metabolized by intracellular 4-hydroxy-D-proline oxidases.  Strong B-cell mitogen.  Plays an important role in the regulation of intra- and extracellular amino acid pools, allowing the bacterium to profit from host precursors and enzymatic pathways (By similarity).
What are the official names of this protein?
4-hydroxyproline epimerase, Hydroxyproline-2-epimerase, HyPRE.
What is the protein family that this protein belongs to?
Belongs to the proline racemase family.
Protein: MNMG_ECO27
Sequence: MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTSLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGMLRRSA
What is the function of this protein?
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.
What are the official names of this protein?
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, Glucose-inhibited division protein A.
What is the protein family that this protein belongs to?
Belongs to the MnmG family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: UVRC_PORG3
Sequence: MMTRDELNIILPTLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVDSEGDALLLENSLIKEYQPRYNVLLKDGKTYPSIVIKREPFPRIFATRDIKKDGSEYFGPYPGALIAKGMLRLVKEIYPIRTCKLDLREEKIRQGRYRVCLQYHIKKCKGPCIGNQTSNEYESNVSEIRDLLRGNLHRLVRMYRDRMQAYSEELRFEEAQICKERIELLERYEAKHTVVPRNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQRFESNAHEIVLPFDTGWQTGESITTTIPRRGDKRKLLELSEKNVAQYKLDKLKRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSNIQGTSPVAACVVFKMGKPSKKDYRKFHVKTVEGPNDFASMREIISRHYTRLTEENLPLPDLIVVDGGKGQLSAAYETLDKLGLIGKIPIIGLAERLEEIFFPKDPVPLILDKKSETLKVIQHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKEDLLRHFKSVKRIRSAEEEELSALIGRNKAKLLYEGLRKK
What is the function of this protein?
The UvrABC repair system catalyzes the recognition and processing of DNA lesions.  UvrC both incises the 5' and 3' sides of the lesion.  The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
What are the official names of this protein?
UvrABC system protein C, Protein UvrC, Excinuclease ABC subunit C.
What is the protein family that this protein belongs to?
Belongs to the UvrC family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: CLPP_HELPY
Sequence: MMGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQKNVK
What is the function of this protein?
Cleaves peptides in various proteins in a process that requires ATP hydrolysis.  Has a chymotrypsin-like activity.  Plays a major role in the degradation of misfolded proteins.
What are the official names of this protein?
ATP-dependent Clp protease proteolytic subunit, Endopeptidase Clp.
What is the protein family that this protein belongs to?
Belongs to the peptidase S14 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: NUOB1_GLUDA
Sequence: MRWSLTRPGEEPGTPRDATMTETVKRNLVMGRLQDFVSWGQKNSIWPFNFGLSCCYVEMATAFTSKYDIARFGSEVLRATPREADLIVISGTVFVKMAPIVKYLYDQMLEPRWVISMGSCANSGGMYDIYSVVQGVDSFLPVDVYVPGCPPRPDALLEGLMLLQDSVGTQRRPLSWMVGPQGVERVTPPSLRDAKRDQRRAAQTLRSPDTI
What is the function of this protein?
NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.  The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone.  Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
What are the official names of this protein?
NADH-quinone oxidoreductase subunit B 1, NADH dehydrogenase I subunit B 1, NDH-1 subunit B 1.
What is the protein family that this protein belongs to?
Belongs to the complex I 20 kDa subunit family.
What are the subcellular locations of this protein?
Cell inner membrane; Peripheral membrane protein; Cytoplasmic side.
Protein: KU80_ASPOR
Sequence: MADKEATVYIVDVGRSMGECRNGRSVTDLEWAMQYVWDRITGTVATGRKTAMMGVIGLRTDETSNELEDDVHFSHIAVLSNLKQFLMPDIRKLEDELKPSKTDKGDAISAIILAIQMIITHCKKLKYRRKIVLVTNGQGRMSDEDLGEIVKKVKEDNIELVVMGIDFDDPEYGYKEEDKDPHKAENETLLRTLVEDCDGVYGTFEQAVAELDIPRVKSVRSVASFKGYLQLGNPEEYDSALRIPVERYYRTYPAKPPTASSFVLRSEPEAGQEEAESSEAAAATQKGSQSGDAGLTTVRTMRTYQVEDKSAPGGKIDIERDELAKGYEYGRTAVHISETDENITILDTFAGLELMGFIQTDQYQRYMHMSNTNIIIAQRANDKAALALSSFIHALFELECYAVARLVVKENKPPVIVLLAPSIEPEYECLLEVQLPFAEDVRTYRFPPLDKVITVSGKVVTQHRNLPSDDLLDVMGKYVNSMELVDADEDGDPVETFPIDDSYSPVLHRIDAAIRARAIHPDQPIPPPSERLTKFSHPREDLIEKSQKHLEKLIEIADVKKVPPKAKGRKRTRETEKPLSGLDVDALLHHEKRVKISPNNAIPEFKQTLAQAENIEAIKDATKQMMVIVEDQIKHSLGNANYDRVIEALGTMRDELVSYEEPASYNDFLGQLKDKLLQEKLGGDRQELWWLVRRNKLGLVTQRESDQSRVTDTEAKEVSLTKMKE
What is the function of this protein?
Single-stranded DNA-dependent ATP-dependent helicase.  Involved in non-homologous end joining (NHEJ) DNA double strand break repair.  DNA-binding is sequence-independent but has a high affinity to nicks in double-stranded DNA and to the ends of duplex DNA.  Binds to naturally occurring chromosomal ends, and therefore provides chromosomal end protection.  Required also for telomere recombination to repair telomeric ends in the absence of telomerase.  ku70, of the ku70/ku80 heterodimer, binds to the stem loop of tlc1, the RNA component of telomerase.  Involved in telomere maintenance.  Interacts with telomeric repeats and subtelomeric sequences thereby controlling telomere length and protecting against subtelomeric rearrangement.  Maintains telomeric chromatin, which is involved in silencing the expression of genes located at the telomere.  Required for mating-type switching.
What are the official names of this protein?
ATP-dependent DNA helicase II subunit 2, ATP-dependent DNA helicase II subunit Ku80.
What is the protein family that this protein belongs to?
Belongs to the ku80 family.
What are the subcellular locations of this protein?
Nucleus. Chromosome, telomere.
Protein: FBK8_ARATH
Sequence: MGSVMSLSCSKRKATSQDVECSSESRKRRKISSENDEEECCRLIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTKGHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGRRDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSCVWRFDPILNSWSEVSSMLASRAYSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAGTKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIGEVPVYDLTDSESPYLLAGFHGKLHFITRDPNHNVTVLRADVPNIPVSSSSSSSSSVSIPHLKTNAPNKSDTVTWKLIATKDFGAAELVSCQVIDI
What are the official names of this protein?
F-box/kelch-repeat protein At1g22040.
Protein: LIPA_ZYGRC
Sequence: MIRVRTSLKKCDVSLGLRLISTTRTNPTTPTTPRKRRATVFKDTLNKGPSFEDFVSGRAAEVSLDPLERARSTVEENQRLPKWLKTPIPKGSNFHKLKEDVRDLKLSTVCEEARCPNIGDCWGGNDKSKATATIMLLGDTCTRGCRFCSVKTNRKPGAPDPMEPENTAEAISRWGLGYVVLTTVDRDDLIDGGSHHLAETVRKIKQKAPNTLVETLAGDFRGDFQAVDVMAQSGLDVYAHNLETVESLTPHVRDRRATYRQSLNVLKRAKQTVPTLVTKTSLMLGLGETHEEVIQTLRDLREIKCDVVTFGQYMRPTKRHMKVVEYVTPEKFEFWKEQALEMGFLYCASGPLVRSSYKAGEAFIENVLRKRKPLEQQQESLSAFRI
What is the function of this protein?
Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
What are the official names of this protein?
Lipoyl synthase, mitochondrial, Lipoate synthase, LS, Lip-syn, Lipoic acid synthase.
What is the protein family that this protein belongs to?
Belongs to the radical SAM superfamily. Lipoyl synthase family.
What are the subcellular locations of this protein?
Mitochondrion.
Protein: RSMH_GLUDA
Sequence: MSTIPTSGHIPVMLAEVLEMLCPRDGATYLDGTFGGGGYARAILGAARCTLWAIDRDPAAIRRGQALQAELRDAEGGMRLHMLQGGFGDMQGLLAESGVHSLDGVVLDLGVSSFQLDEVERGFSFRTDGPLDMRMGDTGPTAADIVNTMGESDLADIIYEYGEERMSRRVARAIVAARAQAPITTTFQLADIIRSVVPGDRSGIDPATRSFQGIRIHVNDELGQIVTGLEQALALLAPGGRLVVVSFHSLEDRLVKQALNRAAGRMPGPSRHDPRSMRAEQAAPDFRLLTSRALRPGETECRANPRARSARLRAAERLAVPDTQNSTHNNTSPQERRP
What is the function of this protein?
Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
What are the official names of this protein?
Ribosomal RNA small subunit methyltransferase H, 16S rRNA m(4)C1402 methyltransferase, rRNA (cytosine-N(4)-)-methyltransferase RsmH.
What is the protein family that this protein belongs to?
Belongs to the methyltransferase superfamily. RsmH family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: MAP1_CHLMU
Sequence: MKRNDPCWCGSQKKWKHCHYPTKPERPSDNLRQLYASRYDIIIKTPDQIEKIRKACQVTARILDALCKAAKEGVTTNELDQLSCNLHKQYNAIPAPLNYGQPPFPKTICTSLNEVICHGIPNDTPLQNGDIMNIDVSCIVDGFYGDCSRMVMIGEVPEIKKKVCEASLEALNAAIAILEPNLPLYEIGEVIENCAARYGFSVVDQFVGHGVGVRFHENPYVAHHRNSCKIPLAPGMTFTIEPMINVGKKEGFIDPTNHWEARTCDHQPSAQWEHTVLITDSGYEILTLLDN
What is the function of this protein?
Removes the N-terminal methionine from nascent proteins.  The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val).  Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.
What are the official names of this protein?
Methionine aminopeptidase, MAP, MetAP, Peptidase M.
What is the protein family that this protein belongs to?
Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
Protein: PPE30_MYCBO
Sequence: MDFGVLPPEINSGRMYAGPGSGPMLAAAAAWDGLATELQSTAADYGSVISVLTGVWSGQSSGTMAAAAAPYVAWMSATAALAREAAAQASAAAAAYEAAFAATVPPPVVAANRAELAVLAATNIFGQNTGAIAAAEARYAEMWAQDAAAMYGYAGSSSVATQVTPFAAPPPTTNAAGLATQGVAVAQAVGASAGNARSLVSEVLEFLATAGTNYNKTVASLMNAVTGVPYASSVYNSMLGLGFAESKMVLPANDTVISTIFGMVQFQKFFNPVTPFNPDLIPKSALGAGLGLRSAISSGLGSTAPAISAGASQAGSVGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVPAAAISEGSLLSQMALASVAGGALGGAAARATGGFLGGGRVTAVKKSLKDSDSPDKLRRVVAHMMEKPESVQHWHTDEDGLDDLLAELKKKPGIHAVHMAGGNKAEIAPTISESG
What are the official names of this protein?
Uncharacterized PPE family protein PPE30.
What is the protein family that this protein belongs to?
Belongs to the mycobacterial PPE family.
Protein: MDTH_SHIDS
Sequence: MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLVSIRFVDQMGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLLWFSCLLSGLGGTLFDPPRSALVVKLMPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTIRTPVREGMTRVMRDKRFVTYVLTLAGYYMLAVQVMLMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHRLMAGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLAIGGTIGYIGGGWLFDLGKSAHQPELPWMMLGIIGIFTFLALGWQFSQKRAARRLLERDA
What are the official names of this protein?
Multidrug resistance protein MdtH.
What is the protein family that this protein belongs to?
Belongs to the major facilitator superfamily. DHA1 family. MdtH (TC 2.A.1.2.21) subfamily.
What are the subcellular locations of this protein?
Cell inner membrane; Multi-pass membrane protein.
Protein: GPDA_SALPA
Sequence: MNQSNASMTVIGAGSYGTALAITLARNGHQVVLWGHDPKHIATLEHDRCNVAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFSDVLRQIKPLMRPDARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTDETFADDLQQLLHCGKSFRVYINADFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLTEMSRLGAALGADPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVKGAQDKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKEELSRH
What are the official names of this protein?
Glycerol-3-phosphate dehydrogenase [NAD(P)+], NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.
What is the protein family that this protein belongs to?
Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RNPH_BREBN
Sequence: MRVDGRAHDQLRPVTITRNYIKHAEGSCLIEVGDTKVICTATLEERVPPFMRGGGKGWITAEYSMLPRATATRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDCDVIQADGGTRTASITGAFVAMVDAMQKLVDSGTWKQLPLNDFLAATSVGVVGEEAVLDLNYKEDSTAIVDMNVVMTGKGKFVELQGTGEDAPFSPEQLQEMISLAKVGIDNLIHSQKEALADVTLSFAQSVAEESHA
What is the function of this protein?
Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation.  Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important.  Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
What are the official names of this protein?
Ribonuclease PH, RNase PH, tRNA nucleotidyltransferase.
What is the protein family that this protein belongs to?
Belongs to the RNase PH family.
Protein: RL6_HALSA
Sequence: MARVEIEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDAVVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDVEGEEVVIQNFLGEKAARRTQIRGDTDVVVDDEEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEKPAKGGA
What is the function of this protein?
This protein binds to the 23S rRNA, and is important in its secondary structure.  It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
What are the official names of this protein?
50S ribosomal protein L6, HL10.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL6 family.
Protein: HSLO_STRPQ
Sequence: MDKIIKSIAQSGAFRAYVLDSTETVALAQEKHNTLSSSTVALGRTLIANQILAANQKGDSKITVKVIGDSSFGHIISVADTKGHVKGYIQNTGVDIKKTATGEVLVGPFMGNGHFVTIIDYGTGNPYTSTTPLITGEIGEDFAYYLTESEQTPSAIGLNVLLDENDKVKVAGGFMVQVLPGASEEEIARYEKRLQEMPAISHLLASKNHVEALLEAIYGDEPYKRLSEEPLSFQCDCSRERFEAALMTLPKADLQAMIDEDKGAEIVCQFCGTKYQFNESDLEALINDKA
What is the function of this protein?
Redox regulated molecular chaperone.  Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation.  Plays an important role in the bacterial defense system toward oxidative stress.
What are the official names of this protein?
33 kDa chaperonin, Heat shock protein 33 homolog, HSP33.
What is the protein family that this protein belongs to?
Belongs to the HSP33 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: VG452_BPT4
Sequence: MEYSTGQHLLTIPEIKRYILRNNFSNEEHIVTESMLRNAFKAEYTKIMSNRNEAWTVTDYYD
What is the function of this protein?
May participate in replication-dependent transcriptional events during viral growth.
What are the official names of this protein?
Protein gp45.2, Gene product 45.2, gp45.2.
Protein: MTOX_SALTY
Sequence: MKYDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHHGDTRLIRHAYGEGEKYVPLVLRAQTLWDELSTHNEEPIFVRSGVVNLGPADSAFLANVARSAQQWQLNVERLDATALMTRWPEIRVPDNYIGLFEADSGFLRSELAITTWLRLAREAGCAQLFNSPVSHIHHDDNGVTIETSEGCYHASKALISAGTWVKALVPELPVQPVRKVFAWFKADGRYSTKNRFPAFTGEMPNGDQYYGFPAENDELKIGKHNGGQLIQAPEERKPFAAVASDGAEAFPFLRNVLPGIGGCLHGAACTYDNSPDEDFIIDTLPGHENTLVITGLSGHGFKFAPVLGEIAADFALGKTPSFDLTPFRLSRFSQ
What is the function of this protein?
Catalyzes the oxidative demethylation of N-methyl-L-tryptophan.
What are the official names of this protein?
N-methyl-L-tryptophan oxidase, MTOX.
What is the protein family that this protein belongs to?
Belongs to the MSOX/MTOX family. MTOX subfamily.
Protein: PRMA_LISMF
Sequence: MEWSEVEVHTTNEAVEPVANVLTEFGAAGVSIEDVADFLREREDKFGEIYALRREDYPEDGVIIKAYFLKTTEFVEQIPEIEQTLKNLSTFDIPLGKFQFVVNDVDDEEWATAWKKYYHPVQITDRITIVPSWESYTPSANEIIIELDPGMAFGTGTHPTTQLCIRALSDYLQPGDEVIDVGTGSGVLSIASAKLGAKSILATDLDEIATRAAEENITLNKTEHIITVKQNNLLQDINKTDVDIVVANILAEVILLFPEDVYKALKPGGIFIASGIIEDKAKVVEEALKKAGLVIEKMEQQGDWVAIISKRGVE
What is the function of this protein?
Methylates ribosomal protein L11.
What are the official names of this protein?
Ribosomal protein L11 methyltransferase, L11 Mtase.
What is the protein family that this protein belongs to?
Belongs to the methyltransferase superfamily. PrmA family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: YGDR_ECOL6
Sequence: MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
What are the official names of this protein?
Uncharacterized lipoprotein YgdR.
What is the protein family that this protein belongs to?
To E.coli YgdI.
What are the subcellular locations of this protein?
Cell membrane; Lipid-anchor.
Protein: ARC_STRGG
Sequence: MAAHDDDINRGTRPARGSEDPAGQVAYLEQEIAVLRRKLADSPRHTRILEERIVELQTNLAGVSAQNERLANTLREARDQIVALKEEVDRLAQPPAGFGVFLQANEDGTCDIFTGGRKLRVNVSPSVELDDLRRGQEVMLNEALNVVEAMQFERAGDIVTLKEILEDGERALVVGHTDEERVVRLAEPLLDITIRSGDALLLDSRSGYVYEVVPKSEVEELVLEEVPDIDYDKIGGLGDQIELIRDAVELPYLHPDLFKEHELRPPKGILLYGPPGCGKTLIAKAVANSLAKKVAEVTGQPAGKSYFLNIKGPELLNKYVGETERHIRLVFQRAREKASEGTPVIVFFDEMESLFRTRGSGVSSDVENTIVPQLLAEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAKDIFAKYLTPGLPLHADDLSEHTGSREAAAHAMIQSVVERMYTESEENRFLEVTYANGDKEVLYFKDFNSGAMIQNIVDRAKKMAIKAFLEQGQKGLRVAHLLQACVDEFKENEDLPNTTNPDDWARISGKKGERIVFIRTLVTGKQGADTGRSIDTVANTGQYL
What is the function of this protein?
ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle.  May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis.  Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.
What are the official names of this protein?
Proteasome-associated ATPase, AAA ATPase forming ring-shaped complexes, ARC, Proteasomal ATPase.
What is the protein family that this protein belongs to?
Belongs to the AAA ATPase family.
Protein: PSAB_PROMM
Sequence: MATKFPSFSQGLAQDPTTRRIWYGIATAHDFESHDGMTEERLYQKLFSTHFGHLAVIGLWVAGNLFHIAWQGNFEQWVADPQNVQPIAHAIWDPHFGQGITDALTQAGASRPVNICYSGLYHWWYTIGMRTNTELYQGAIFIDILVAWLLFGGWLHLQPKFRPSLAWFKNAEAMMNHHLAVLFGFTNIAWTGHLVHVAIPESRGQHVGWDNFLTVLPHPEGLTPFFTGNWGAYAQNPDSLNHAFGTSEGAGTAILTFLGGVHPQSGALWLTDISHHHIAIGVFMIIGGHMYRNSFGIGHTFKEITDGHNTNHPNDPHKDGFREKIGHYGLNHNGITDTINNSLHFQLGLALACLGTAASLVAHHMGALPSYAFIAQDYTTQAALYTHHQYIAIFLMCGAFSHGAIFFVRDYDPEANKDNVLARVLETKEALISHLSWVCMLLGFHTLALYLHNDVVIAFGTPEKQILVEPIFAQFIQAASGKVMYGLDVLLANANSAPSLAAAGMPGDHYWMDLINASPEVSNFMPIGPGDFLVHHGIALGLHTTALILIKGALDARGSKLMPDKKDFGYAFACDGPGRGGTCDISAWDSTYMAIFWALNTIAWATYYWHWKHLAAWQGNMAQFNESSTHLMGWFRDYLWINSSQIINGYNPFGINNLSPWAYMFLAGHLVWATGFMFLISWRGYWQELIETLVWAHQRSPIANLVGWRDKPVALSIVQARLVGVTHFAVGNIFTFGAFVIASTASKFG
What is the function of this protein?
PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX.  PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn.  Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.
What are the official names of this protein?
Photosystem I P700 chlorophyll a apoprotein A2, PsaB.
What is the protein family that this protein belongs to?
Belongs to the PsaA/PsaB family.
What are the subcellular locations of this protein?
Cellular thylakoid membrane; Multi-pass membrane protein.