PharMolix/UniProtQA huggingface dataset:
Protein: SYL_ALISL
Sequence: MQEQYNPQDLEQKIQKHWDDSKTFVVTEDASKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVSRYQRLQGKNVMQPIGWDAFGLPAENAAVKNKTAPAPWTYENIEYMKNQLKLLGFGYDWSREFATCTPEYYRWEQEFFTKLYNKGLVYKKTSSVNWCPNDQTVLANEQVEDGCCWRCDTPVEQKKIPQWFIKITEYAQELLDDLDTLDGWPDMVKTMQRNWIGRSEGVELSFAVNGEEAPLEVYTTRPDTLMGVTYVGIAAGHPLAEQAAAKNPELFAFTEECRNTKVAEAELATMEKKGMDTGLRAIHPLNGREVPIYVANFVLMDYGTGAVMAVPAHDQRDYEFATKYGLDIIPVIKPEDGSDVDVSDVAYTEKGVLFDSGEFDGLAFQDAFDAIAAKLEAEGKGKKTVNFRLRDWGVSRQRYWGAPIPMVTTEDGEVHPVPADQLPVILPEDVVMDGVTSPIKADKEWAKTTFNGEPALRETDTFDTFMESSWYYARYCSPQADDILDPEKANYWLPVDQYVGGIEHACMHLLYSRFFHKLLRDAGYVTSNEPFKQLLCQGMVLSDAFHHTNEKGTKEWIAPTDVTIERDAKGRIEKAVDDQGREVQHSGMIKMSKSKNNGIDPQEMVDKFGADTVRLFMMFAAPADMTLEWQESGVEGASRFLKRVWKLVHEHTTKGTTEALDVAALSGDQKALRRDVHKTIAKVSDDIGRRQTFNTAIAAIMELMNKLNKAPQGSAQDRALLDEALKAVVVMLYPMTPHASFAMWEALGESNIDTTAWPTFDEKALIEDEKTIVVMINGKLRAKLIVAADATEEQVKELGLNDENALKFLDGLTIRKVIYVPGKLLNIVAN
What are the official names of this protein?
Leucine--tRNA ligase, Leucyl-tRNA synthetase, LeuRS.
What is the protein family that this protein belongs to?
Belongs to the class-I aminoacyl-tRNA synthetase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: NDHK_PROMP
Sequence: MNNSLSPKAIRELREETCNPLGAPQVTTDLSENIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVANESILERNKSEQTHRYLTVDHEMNLVFSENTGEYLNKKSEKSIESSKLNPVEESSENIYETNSIDEVIK
What is the function of this protein?
NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain.  The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone.  Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.  Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
What are the official names of this protein?
NAD(P)H-quinone oxidoreductase subunit K, NAD(P)H dehydrogenase I subunit K, NDH-1 subunit K, NDH-K.
What is the protein family that this protein belongs to?
Belongs to the complex I 20 kDa subunit family.
What are the subcellular locations of this protein?
Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side.
Protein: SYL_EDWI9
Sequence: MQEQYRPEDIESHVQRHWDEQKTFQVTEDAGKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVISRYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYANIDYMKNQLKLLGFGYDWSREIATCKPDYYRWEQWFFTKLYEKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDSKVERKEIPQWFIKITDYADQLLNDLDRLEEWPEQVKTMQRNWIGRSEGVEITFHVADRDDTFAVYTTRPDTFMGVSYLAIAAAHPLAQQAATGNPALTQFIDECKNTKVAEADMATMEKKGMATGLYAIHPLNGERLPIWVANFVLMDYGTGAVMSVPAHDQRDWEFATRYDLPMKPVILTADGQAPDIRAAAMTDKGVLFNSGEFDGLDFSAAFDAVANRLIAAGVGERKVNYRLRDWGVSRQRYWGAPIPMMTLEDGSVIPTPEEQLPVILPEDVVMNGITSPIKADPSWAKTTVNGQPALRETDTFDTFMESSWYYARYTCPQFDQGMLDPQAANYWLPVDQYVGGIEHAIMHLMYFRFFHKLMRDAGLVDSDEPAKRLLCQGMVLADAFYYTGTNGERNWVSPVDVTVERDDKGRITQATDRDGRELVYAGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPAEMTLEWQESGVEGANRFLKRVWKLAFDHQQKGLASALDLTALNDDQKALRRDLHKTIAKVSDDIGRRQTFNTAIAAVMELMNKLTRAPQESEQDRALMQEALLAVVRMLYPFTPHVCFTLWRALGGAGDIDTAPWPVADDAAMVEDSKLIVVQVNGKVRGKITVAADASEEQVRALAAQEPLVAKYLDGVTVRKVIFVPGKLLNLVVG
What are the official names of this protein?
Leucine--tRNA ligase, Leucyl-tRNA synthetase, LeuRS.
What is the protein family that this protein belongs to?
Belongs to the class-I aminoacyl-tRNA synthetase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: LTOR4_DROME
Sequence: MLKMDREKLIVPNQIGYLILKEDGAVLESGGDLKNDERSANVIMGLLNLTETIDESFMPSSSCERITIDYEHHYYSICMSNRRIYIIKISKSQNGVTTTTSSSSSNSVYNDASDSGAVLA
What is the function of this protein?
Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids.  As part of the Ragulator complex, may activate the TOR signaling cascade in response to amino acids.
What are the official names of this protein?
Ragulator complex protein LAMTOR4 homolog, Late endosomal/lysosomal adaptor and MAPK and MTOR activator 4.
What is the protein family that this protein belongs to?
Belongs to the LAMTOR4 family.
What are the subcellular locations of this protein?
Lysosome.
Protein: RS17_STRA1
Sequence: MERNQRKTLYGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKKYKAHDENNVAKEGDIVRIMETRPLSATKRFRLVEVVEKAVII
What is the function of this protein?
One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
What are the official names of this protein?
30S ribosomal protein S17.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS17 family.
Protein: GCSP_JANSC
Sequence: MPWTTTDYDPTDFANRRHIGPSPAEMAEMLEFVGADSLDALIDDTVPASIRQAGALDWAAMSEAELLDHMRAIADKNKPMVSMIGQGYFGTHTPPAIQRNVLENPAWYTAYTPYQPEIAQGRLEALLNFQTMVADLTGLPVANASLLDEATAAAEAMVMAQRASKSKARTFFVDETCHPQTIAVIQTRAEPLGIEVRVGDAAMLDADAVFGAIFQYPCTFGGLRDPSAQIEALHEAKAIAVVATDLLALTVLKEPGAMGADIAVGSAQRFGVPLGYGGPHAAFMSCRDALKRSLPGRIVGVSVDSHGQNAYRLSLQTREQHIRREKATSNVCTAQALLAVMASFYAVFHGPKGLRAIAERVHMRAVRLAASLSAGGFAPDNDTFFDTLTVHVGDKQSRIMAAAVARGINLRDVGADRIGISVDEVTTDAHIEAVCRAFGVLKAPAPKAPAISDDLLRMSDYLTHPIFHMNRAESEMMRYMRRLSDRDLALDRAMIPLGSCTMKLNAAVEMMPITWPEFGNLHPFAPADQAEGYAEMLEDLSAKLCDITGYDAMSMQPNSGAQGEYAGLLTIAAYHRARGETRNICLIPVSAHGTNPASAQMAGMQVVVVKSQEDGDIDLVDFRAKAEAAGDKLAACMITYPSTHGVFEESVREVCEITHELGGQVYLDGANLNAMVGLSKPGELGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPHLPGHPETGGTQGPVSAAPYGSASILPISYAYVHLMGGSGLTQATKVAILGANYIAKRLEGDYGVLFKGKTGRVAHECILDTRPFAEAGITVDDIAKRLMDHGFHAPTMSWPVAGTLMVEPTESETKAELDRFITAMQAIRAEIAEVEDGLPAGDSPLHHAPHTMEDLVRDWDRAYTREQGCFPPGAFRVDKYWPPVNRVDNVAGDRNLICTCPPLEEYLDAAE
What is the function of this protein?
The glycine cleavage system catalyzes the degradation of glycine.  The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.
What are the official names of this protein?
Glycine dehydrogenase (decarboxylating), Glycine cleavage system P-protein, Glycine decarboxylase, Glycine dehydrogenase (aminomethyl-transferring).
What is the protein family that this protein belongs to?
Belongs to the GcvP family.
Protein: TRMB_XANOR
Sequence: MTDPFTSDGAKMPPKPFTIEAGRRQVRSFVLRQGRFTSAQQRAFDELWPRFGLEYLGTPRDLAATFGRDTHKVLEIGFGNGAALRFAAQQDPSRDYIGIEVHAPGVGRLLNALEEDGSTHVRLYHHDAVEVLEHEIADGALDEVRIYFPDPWHKKRHNKRRLIQPAFAQLLVRKLRDGGRLHAATDWADYAEQMWDVLDATPGLVNRAGPRGHVERPAWRPQTHFETRGQKLGHGVWDLVYDRDPGVGSGDA
What is the function of this protein?
Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
What are the official names of this protein?
tRNA (guanine-N(7)-)-methyltransferase, tRNA (guanine(46)-N(7))-methyltransferase, tRNA(m7G46)-methyltransferase.
What is the protein family that this protein belongs to?
Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
Protein: RS11_RIPO1
Sequence: MARPTKKTGTKKQKKNVPNGIAHIQSTFNNTIVTIADTKGDVVSWASAGSSGFKGAKKGTPFAAQTAADAAARRAIDQGMRQIEVMVSGPGAGRETAIRALQGAGLEITLIRDVTPIPHNGCRPPKRRRV
What is the function of this protein?
Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA.  Forms part of the Shine-Dalgarno cleft in the 70S ribosome.
What are the official names of this protein?
30S ribosomal protein S11.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS11 family.
Protein: ATP9_CANGA
Sequence: MQLALAAKYIGAGISTIGLIGAGIGIGIVFAALINGVSRNPSLKDTLFSYSILGMALSEATGLFCLMISFMLLFAV
What is the function of this protein?
Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain.  F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk.  During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.  Part of the complex F(0) domain.  A homomeric c-ring of probably 10 subunits is part of the complex rotary element.
What are the official names of this protein?
ATP synthase subunit 9, mitochondrial, Lipid-binding protein.
What is the protein family that this protein belongs to?
Belongs to the ATPase C chain family.
What are the subcellular locations of this protein?
Mitochondrion membrane; Multi-pass membrane protein.
Protein: RS13_STRMK
Sequence: MARIAGVNLPAQKHVWVGLQSIYGIGRTRSKKVCEVAGVASTTKIRDLSEPEIERLRAEVGKYIVEGDLRREIGIAIKRLMDLGCYRGLRHRRGLPLRGQRTRTNARTRKGPRKAIKK
What is the function of this protein?
Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA.  In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement.  Contacts the tRNAs in the A and P-sites.
What are the official names of this protein?
30S ribosomal protein S13.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS13 family.
Protein: SDHC_MYCTU
Sequence: MNTTATTVSRGRRPPRTLYRGDPGMWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLFHALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR
What is the function of this protein?
Membrane-anchoring subunit of succinate dehydrogenase 2 (Sdh2).  Sdh2 may catalyze the two-electron oxidation of succinate to fumarate with a corresponding reduction of quinone to quinol under low oxygen conditions, when the primary aerobic succinate dehydrogenase (Sdh1) is inhibited.  Sdh2 seems to be the generator of the proton motive force (PMF) under hypoxia.
What are the official names of this protein?
Succinate dehydrogenase 2 membrane subunit SdhC.
What is the protein family that this protein belongs to?
Belongs to the cytochrome b560 family.
What are the subcellular locations of this protein?
Cell membrane; Multi-pass membrane protein.
Protein: FEOC_YERE8
Sequence: MASLVQLRDAIALSGSADANQLSHQLAMPLPLVEAMLEKLTAMGKIERIEQDNSGCLTGSCKSCPEGKNQCSTVIYQLKNHR
What is the function of this protein?
May function as a transcriptional regulator that controls feoABC expression.
What are the official names of this protein?
Probable [Fe-S]-dependent transcriptional repressor.
What is the protein family that this protein belongs to?
Belongs to the FeoC family.
Protein: GCSP_BRUO2
Sequence: MTEFLPFVARHIGPRHEDERAMLAALGLPSMETLITQAVPASIRLNRALNLPAALSEADALAELGTIMGRNVVKKSFIGAGYHGVHTPPVIQRNLFENPAWYTAYTPYQSEISQGRLELLFHFQTLVAELTGLPVACASLLDEATAVAEAIGVACRHHRDKRSRILLAGELHPQTVDVVNTRAEPLGWEIATGSDVDDNTAAIVVPWPDTRGVYGDFAKVIADAKAKGALVIAVADPLALTIMEAPARWGADMAVGSMQRYGVPMGFGGPHAAYLAVSEVLTRIIPGRIVGQSVDAHGRAAYRLALQTREQHIRRDKATSNICTAQALLANMAAAFAIWHGPAGLQAIAMRVAALAARFAAALKAAGVEIAGESLFDTVTAKVPGKAAAIAAEADKGGRLIRIIDTDTVGVTFDETSTEEDLTALASLFGTKPVGGDTVLVPGKERGEGFLTQEVFHSHRSETEMMRFLRRLADKDLALDRAMIPLGSCTMKLNAAAEMMPVSWNTVANLHPFAPAEQVQGYAKMTSDLEAWLCEITGFAGVSLQPNAGSQGEYAGLMAIRHYHQARGQGHRNICLIPSSAHGTNPASASMAGMSVVVVNCRPDGDIDIDDLKAKAEKHRDNLAAFMITYPSTYGVFEEGIKAFCEIVHDNGGQVYFDGANLNALVGLARPADIGADVCHMNLHKTFCIPHGGGGPGVGPIGVAKHLVPYLPGHVEAGSEHAVAAAQFGSASILVITWMYIRMMGGAGLKKATEAAILNANYIAHRLKGVYPILYTGAHDRVAHECIVDTRVLKDSAGITVEDVAKRLIDYGFHAPTMSWPVAGTLMIEPTESEPKLEIDRLCDAMIAIAGEAKKVADGVWPADDNPLANAPHTASDTLATEWKHPYTRAEAIFPGGAFDPTAKYWPPVSRVDNVGGDRNLICSCPPVAAYG
What is the function of this protein?
The glycine cleavage system catalyzes the degradation of glycine.  The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.
What are the official names of this protein?
Glycine dehydrogenase (decarboxylating), Glycine cleavage system P-protein, Glycine decarboxylase, Glycine dehydrogenase (aminomethyl-transferring).
What is the protein family that this protein belongs to?
Belongs to the GcvP family.
Protein: AMP3_STEME
Sequence: VGPGGECGGRFGGCAGGQCCSRFGFCGSGPKYCAH
What is the function of this protein?
Has antifungal activity against A. niger (IC(50)=5. 4 uM), B. sorokiniana (IC(50)=2. 0 uM), B. cinerea (IC(50)=1. 6 uM), F. solani (IC(50)=3. 7 uM) and A. alternata (IC(50)=5. 0 uM).  Binds chitin in vitro.  Has no antibacterial activity at concentrations up to 10 uM.
What are the official names of this protein?
Antimicrobial peptide 3, SmAMP3.
Protein: SSO1_YEAST
Sequence: MSYNNPYQLETPFEESYELDEGSSAIGAEGHDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSARKARKNKIRCWLIVFAIIVVVVVVVVVPAVVKTR
What is the function of this protein?
Required for vesicle fusion with the plasma membrane.
What are the official names of this protein?
Protein SSO1.
What is the protein family that this protein belongs to?
Belongs to the syntaxin family.
What are the subcellular locations of this protein?
Membrane; Single-pass type IV membrane protein.
Protein: FGFR2_CHICK
Sequence: MVSWDSGCLICLVVVTMAGLSLARPSFNLVVEDATLEPEEPPTKYQISQPDVHSALPGEPLELRCQLKDAVMISWTKDGVPLGPDNRTVIIGEYLQIKDASPRDSGLYACTAIRTLDSDTLYFIVNVTDALSSGDDEDDNDGSEDFVNDSNQMRAPYWTHTDKMEKRLHAVPAANTVKFRCPAMGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCIVENQYGSINHTYHLDVVERSPHRPILQAGLPANASAVVGGDVEFVCKVYSDAQPHIQWIKHVERNGSKYGPDGLPYLQVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHTAWLTVLPAPEKEKEFPTSPDYLEIAIYCIGVFLIACMVLTVILCRMKNTTKKPDFSSQPAVHKLTKRIPLRRQVTVSADSSSSMNSNTPLVRITTRLSSTADAPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDRPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSFDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWQAVPSQRPTFKQLVEDLDRILTLTTNEEYLDLSGPLEQYSPSYPDTRSSCSSGDDSVFSPDPMPYEPCLPKYQHMNGSVKT
What is the function of this protein?
Tyrosine-protein kinase that acts as cell-surface receptor for fibroblast growth factors and plays an essential role in the regulation of cell proliferation, differentiation, migration and apoptosis, and in the regulation of embryonic development.  Required for normal embryonic patterning, limb bud development, lung morphogenesis, osteogenesis and skin development.  Plays an essential role in the regulation of osteoblast differentiation, proliferation and apoptosis, and is required for normal skeleton development.  Promotes cell proliferation in keratinocytes and immature osteoblasts, but promotes apoptosis in differentiated osteoblasts.  Phosphorylates PLCG1, FRS2 and PAK4.  Ligand binding leads to the activation of several signaling cascades.  Activation of PLCG1 leads to the production of the cellular signaling molecules diacylglycerol and inositol 1,4,5-trisphosphate.  Phosphorylation of FRS2 triggers recruitment of GRB2, GAB1, PIK3R1 and SOS1, and mediates activation of RAS, MAPK1/ERK2, MAPK3/ERK1 and the MAP kinase signaling pathway, as well as of the AKT1 signaling pathway.  FGFR2 signaling is down-regulated by ubiquitination, internalization and degradation.  Mutations that lead to constitutive kinase activation or impair normal FGFR2 maturation, internalization and degradation lead to aberrant signaling.  Over-expressed FGFR2 promotes activation of STAT1 (By similarity).
What are the official names of this protein?
Fibroblast growth factor receptor 2, FGFR-2, Tyrosine kinase receptor CEK3.
What is the protein family that this protein belongs to?
Belongs to the protein kinase superfamily. Tyr protein kinase family. Fibroblast growth factor receptor subfamily.
What are the subcellular locations of this protein?
Cell membrane; Single-pass type I membrane protein. Golgi apparatus. Cytoplasmic vesicle. Note=Detected on osteoblast plasma membrane lipid rafts. After ligand binding, the activated receptor is rapidly internalized and degraded (By similarity).
Protein: VL1_HPV50
Sequence: MAHWSSTSGKLYLPPSTPVARVLSTDEYVKETDVYFHARSERLLIVGHPYYDIEDGGDIKVPKVSANQYRVFRCELPDPNKFALIDTTLYNSDTERLVWKLVGIEVGRGGPLGVGSTGHPLFNKVGDTENPSFYLGPQEKDERQNLSIDPKQTQLLIVGCKPAVGEYWDLAEPCDKNSLNNGKCPPIQLVNSYIQDGDMGDIGFGNANFPKLQQDRAGVPLDIVDSISLWPDLLKMTKDVYGDHVFFYAKQEQLYARHLFTHAGPIGEPIPNVSGVYNYAVNPNQPEQNRRTNIGSYLYFTTPSGSLNTSSSQLFNRPYWIRRAQGTNNCICWGNEVFVTVFDNTRNINFNISVKKDVNPLDPLNVASSYMYSKDDFNQYSRHTEEYELEFIFQLCKVGLDADILAHLNVMDPRILENWQLAYVPPAPSGIGDTYRYLKSDATKCPAKDSSAEVVDPYKEYTFWNVNLTEKFSSELDQYALGRKFLFQTGLLKRRVRTDYTVATVSKPNKRKRTR
What is the function of this protein?
Forms an icosahedral capsid with a T=7 symmetry and a 50 nm diameter.  The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with L2 proteins.  Binds to heparan sulfate proteoglycans on cell surface of basal layer keratinocytes to provide initial virion attachment.  This binding mediates a conformational change in the virus capsid that facilitates efficient infection.  The virion enters the host cell via endocytosis.  During virus trafficking, L1 protein dissociates from the viral DNA and the genomic DNA is released to the host nucleus.  The virion assembly takes place within the cell nucleus.  Encapsulates the genomic DNA together with protein L2.
What are the official names of this protein?
Major capsid protein L1.
What is the protein family that this protein belongs to?
Belongs to the papillomaviridae L1 protein family.
What are the subcellular locations of this protein?
Virion. Host nucleus.
Protein: AMP3_PARCM
Sequence: MGPMKVLLVMLVVMVAAPHIADARSQPGPTCPSSVQAILCDNRCGRSACSYYIERCACCAKCNRIPYYGASNHPGR
What is the function of this protein?
Has antibacterial activity, mainly against marine Gram-positive bacteria like C. maltaromaticum (MIC=25 uM), C. mobile (MIC=12. 5 uM), C. divergens (MIC=25 uM) and C. funditum (MIC=12. 5 uM) but also against C. glutamicum (MIC=12. 5 uM).  Has very little or no activity against Gram-negative bacteria.
What are the official names of this protein?
Paralithocin 3, P34.
What is the protein family that this protein belongs to?
Belongs to the paralithocin family.
Protein: Y2806_VIBCM
Sequence: MGRSFEVRKASMAKTQGAKIKVYSKYGKEIYVCAKNGGTDPDMNLSLRHLITKAKKDQVPAHVIEKALDKASGGAGEDYQPARYEGFGPGGASVIVDCLTDNGNRTYQDVRQCFVKTGAKIGTPGVVAHMFDHQAVFQFQGDDEEAILEALMMADAEVTDIEHEDGVITVFAPNTEFFKVKTALNEAFPDLTLDVEEITFVPQNRTVVSGEDAEKFQKFLDMLDDCDDVQQVYHNADIE
What are the official names of this protein?
Probable transcriptional regulatory protein VCM66_A0006.
What is the protein family that this protein belongs to?
Belongs to the TACO1 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RL18_SYNC1
Sequence: MNAALKRRQARLKRQVRVRRKLRGTPEMPRLCVFRSAKHIYAQIIEDVTGKTLVSASTVNSDVVEGLENTGNVEAAKAVGKAIAQKALGMDIKNVVFDRNGFLYHGRVKTLAEAAREAGLSF
What is the function of this protein?
This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
What are the official names of this protein?
50S ribosomal protein L18.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL18 family.
Protein: EX7L_RICTY
Sequence: MIDNDIANQVPKEFSVSEISNKIKELIENNFGHIKVKGEISGLKISSSGHAYFNLKENTAILACTCWRPILVKIKFPLNDGMEVVIGGKLSSYSGNSRYQLSVDNLQPAGLGAMIQILNERKIRLEKEGLFNKKRIPIPFLPDKIGVITSITGAVIKDIIHRIRERCPTRIIIWQVSVQGENSSHEMAEAIEGFNNLEEIHKPSVIIVARGGGSIEDLWSFNDEILVRAAYNSKIPIISAVGHEADYTLIDLAVDKRAPTPTAAAEFAVPVRSILNNTIQSYEKILLNNTNRLIKYHEQSIVNYDKIHRYFAYYINNRQQLLDETGFNLLDVLIRCIALKETKLKSFAKERINYAKIINYKILELTHQTAYLLKSVNNTLKNFEYKLELNSTLLASLDYHNVLKRGFAIVTGDAGNFLSSKSTATNEQSLNIKFFDGEINVVLSSHDLNARSS
What is the function of this protein?
Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.
What are the official names of this protein?
Exodeoxyribonuclease 7 large subunit, Exodeoxyribonuclease VII large subunit, Exonuclease VII large subunit.
What is the protein family that this protein belongs to?
Belongs to the XseA family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: Y1152_STRP8
Sequence: MNIMEIEKTNRMNALFEFYAALLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHMYSDYVVRSEIFDDMIAHYPHDEYLQEKISILTSIDNRE
What is the function of this protein?
Might take part in the signal recognition particle (SRP) pathway.  This is inferred from the conservation of its genetic proximity to ftsY/ffh.  May be a regulatory protein (By similarity).
What are the official names of this protein?
UPF0122 protein spyM18_1152.
What is the protein family that this protein belongs to?
Belongs to the UPF0122 family.
Protein: SPZ11_ORYSJ
Sequence: MDQCLQVAWIAGSDAITEQSNFIFSPMCLRAGLALLATGADGETLRQMLAFLGSEHIHQLNATSAGLLAEMQAWPQLVFAAGIFVDRSLRLRPEFKSTAAAAHGGIHAICGLPEPDHEGALNQRHPPWHLEQRHDVRPCERHALQGEVGSDVRVVEHHAGNVPPPRRHDGAGAVPVGPRDALRRQGAKFEFHGLEFKVLQLFYKMVGRDGQVDFGFGAPCFCMLVFLPIKRDGLRHLLRMAVTEPDFVTRCVPRSRQIVTPCKVPKFKFSSQLDAGGALAQLGLGAPFDPDAADLSRMAVNTPPAGLYVSTMRQKCAVEVDEEGTTAVEAMYSPSSPGYSPGYQPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLGHVMDPSKEDQ
What are the official names of this protein?
Putative non-inhibitory serpin-Z11, OrysaZ11.
What is the protein family that this protein belongs to?
Belongs to the serpin family.
Protein: GATB_ANAMF
Sequence: MAANTGIIKGNTHEWEMVIGLEVHAQVISNSKLFSGASTGFCSEPNTQVALFDVAMPGTLPVLNARCVEQAVRTSLALSCEVHKYSVFDRKNYFYPDLASGYQITQFYFPIATDGHITLDECCSKDVRISRIHLEQDAGKSMHVGDKTYLDFNRAGVALMEIVSAPDFRSPEEAAEYIKKLRIILRAIGTCDGDMENGSLRCDANVSVRKVGDSNLGARSEIKNLNSIKHLAQAIRHEACRQVEVLESGGVVSQSTMLFDVDTCTTRSMREKEDACDYRYFPDPDLLPLELTTAFIDNIRASLPELPSEKKRRYMQDIGLSRYDADILSSDKDVSAYFESVVAKHAPDLAVPWITGELFGALNKRGSSIADSPVSAGRLVELLDLVADGTISGKMAKQVFALMFETEKSASDIVREQGLCQITSEETLAPIVDRIISESPDEVAEYRQGKTKLLGYFVGKVMKETNGQANPGLVNTLIKRRLAED
What is the function of this protein?
Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases.  The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).
What are the official names of this protein?
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Asp/Glu-ADT subunit B.
What is the protein family that this protein belongs to?
Belongs to the GatB/GatE family. GatB subfamily.
Protein: HXC6A_TAKRU
Sequence: MNSYFANPSLSCHLSGGQDVLPNVPLNSTTYDTVRHFSSYGAAVTQNRIYAPFYSPQDNVVFGSGRAQYDYGSNVFLQDKDVLPSCRQTNMGLSTQSHIAQEYSLDQGRTGTQEQKSNIPIYPWMQRMNSHSGVGYGTDRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTVTGSEQTGGSQEEREDRGGATEEGKDEDKKKE
What is the function of this protein?
Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
What are the official names of this protein?
Homeobox protein Hox-C6a, FrHOXC-6.
What is the protein family that this protein belongs to?
Belongs to the Antp homeobox family.
What are the subcellular locations of this protein?
Nucleus.
Protein: COBS_THEVB
Sequence: MKSLWQEWLGAIAFYTCLPISPRWPIQLAGAAKWCPWVGLVLGGMLWGVQWLLDFLQVPSPVASAVLVALWLALTGGLHLDGAMDTADGLAVRDQQRRLEVMADSRAGAFGVMAAMVILLLKVTSLSSLEKGSVLVWVLVLGRLAQVWAIARYPYLKPQGTGQIHKTSGVFPRDFWPSGLLVLLLSFLLPLPLGQLLFGLLLILLIPAWFQSQLGGHTGDSYGAVVEWTEALLLVAFTVGSAS
What is the function of this protein?
Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin).  Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate.
What are the official names of this protein?
Adenosylcobinamide-GDP ribazoletransferase, Cobalamin synthase, Cobalamin-5'-phosphate synthase.
What is the protein family that this protein belongs to?
Belongs to the CobS family.
What are the subcellular locations of this protein?
Cell inner membrane; Multi-pass membrane protein.