PharMolix/UniProtQA huggingface dataset:
Protein: KDSA_XANCP
Sequence: MKLCDFEVGLDQPLFLIAGPCVIESMQLQLDVAGKLKEITGKLGINFIFKSSFDKANRTSGTSFRGPGLEEGLKVLDAVKKQIGVPVLTDVHEYTPMNEVAAVVDVLQTPAFLVRQTDFIKNVCAAGKPVNIKKGQFLAPWDMKPVVDKAKSTGNEQIMVCERGASFGYNNLVSDMRSLSVMRDTGCPVVFDATHSVQLPGGQGSSSGGQREFVPVLARAAVAVGISGLFAETHPDPSKALSDGPNAWPLDRMEELLETLMELDAVTKKHGFARFA
What are the official names of this protein?
2-dehydro-3-deoxyphosphooctonate aldolase, 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase, KDO-8-phosphate synthase, KDO 8-P synthase, KDOPS, Phospho-2-dehydro-3-deoxyoctonate aldolase.
What is the protein family that this protein belongs to?
Belongs to the KdsA family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RL29_LARHH
Sequence: MKASELRAKSVDELKTELLSLLKAQFGLRMQLATQQLAKTSELKKVRRDIARVRTILSEKAA
What are the official names of this protein?
50S ribosomal protein L29.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL29 family.
Protein: PANE_ARCFU
Sequence: MRVQRVQIMGAGALGSLVGALIQLAGYDVIFVARGKQLEALKKGLRVSGLKNAELKVYCTSQPEDADITFVTVKAYDTETVAKKLAEVDAGVVCSLQNGVGNEEILAKYCRKVLGGVTTYGANLKDYGHVVYAGEGYTYVGEMDGRVSGEAEMVAEVLRDAGMRAEAVNDIEFRIWAKAVVNAAINPITAICRVKNGEVVRNPHLWEVARAVADEGRQVMARMGYEFDAASEVRKVAEMTAENRSSMLQDLERGKRTEVEFINGAIVKKGEEFGIDCAVNRTLLNLVRGVESGL
What is the function of this protein?
Catalyzes the NAD(P)H-dependent reduction of ketopantoate into pantoic acid.
What are the official names of this protein?
2-dehydropantoate 2-reductase, Ketopantoate reductase, KPR.
What is the protein family that this protein belongs to?
Belongs to the ketopantoate reductase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: PANB_NEIMA
Sequence: MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVDVLLVGDSLGMAVQGRQSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECVPAELAKKVTESVSCPTIGIGAGVDCDGQVLVMHDMLGIFPGKTAKFVKNFMQGQSSIQAAVRAYVAEVKAKTFPAAEHIFAD
What is the function of this protein?
Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.
What are the official names of this protein?
3-methyl-2-oxobutanoate hydroxymethyltransferase, Ketopantoate hydroxymethyltransferase, KPHMT.
What is the protein family that this protein belongs to?
Belongs to the PanB family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: TAF4_LODEL
Sequence: MSEDLKRSASDIQDELAQSPKRVKFNDPPQIDDVNKYDANNVNANANVNANANVNANANDSNSNNFASIASNVTTNPIDFTVTQPQPVSPEIQNPITTLLQTDPGVGASKDLLTTNGSAINITKNADTNNIETNTASINPVSNTNTNTKPASVDTVDIKSVSANTADTATDTKPVSADNADTATDTKPVSADTADTADTDADAKPASANTSNTTNANTAGTGASNTDVANSSSATTSTGDAKPQVQGANETGSNQHDQRDSSKLNDAIAAAGVDIQKEEELLQQRQLNRKPGAPSEKQDGSKSQTQVPLLNPYHLSAFLAKVSKTHQIHQNFLEDGNLLNLISDACEDWLSHIASKALILSRHRRRGTQFSLKKGGLSSLTQLSQQRSAVSKELRNLALRQKEMEEKRVQKRIVLGLEKSSGNGTDDAANGKPGSEETLHRAANATAAMMATGKKKYSWMSSGGGGAGSIGSLGDDARGSGVGIGGGGVGGGDSKTKQSAILSARGDNGLRYRDLRSTNAIVLKDLLNALEGEKKGTQHAITKGYAKLRD
What is the function of this protein?
Functions as a component of the DNA-binding general transcription factor complex TFIID.  Binding of TFIID to a promoter (with or without TATA element) is the initial step in pre-initiation complex (PIC) formation.  TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by TAF1), facilitation of DNA opening and initiation of transcription (By similarity).
What are the official names of this protein?
Transcription initiation factor TFIID subunit 4, TBP-associated factor 4.
What is the protein family that this protein belongs to?
Belongs to the TAF4 family.
What are the subcellular locations of this protein?
Nucleus.
Protein: NRDI_STACT
Sequence: MKVVYFSFTGNVRRFIARSGFENTLEITNDNCAEVRIDEPYILVTSTIGFGEVPDVVQTFLRHNGTMIRGVVGSGNRNWGQNFAKASDTISKDYMVPLLMKFEVQGTKKDVEEFKDKVGHFYEDNERKAI
What is the function of this protein?
Probably involved in ribonucleotide reductase function.
What are the official names of this protein?
Protein NrdI.
What is the protein family that this protein belongs to?
Belongs to the NrdI family.
Protein: RL29_RICAE
Sequence: MNDLKLLRSKLSTETIEELYKNLNLLKKELFNLRFQQALGDLKNTSRFSLVKKSIARIKTELTKRANSEEY
What are the official names of this protein?
50S ribosomal protein L29.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL29 family.
Protein: RS19_GEODF
Sequence: MARSIKKGPFVDAHLEAKVQAEGASSKKVIKTWSRRSTITPDFIGLTFAVHNGRKFIPVFVTENMVGHKMGEFAPTRTFFGHAADKKSKLKKK
What is the function of this protein?
Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
What are the official names of this protein?
30S ribosomal protein S19.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS19 family.
Protein: MDTJ_ECOLI
Sequence: MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKARKPELEVNHGAV
What is the function of this protein?
Catalyzes the excretion of spermidine.  Can also confer resistance to deoxycholate and SDS.
What are the official names of this protein?
Spermidine export protein MdtJ.
What is the protein family that this protein belongs to?
Belongs to the drug/metabolite transporter (DMT) superfamily. Small multidrug resistance (SMR) (TC 2.A.7.1) family. MdtJ subfamily.
What are the subcellular locations of this protein?
Cell inner membrane; Multi-pass membrane protein.
Protein: YBEY_PSEPW
Sequence: MLELDLQRATDAATPDDAALRAWCELALRQRSADSEMTIRLVDEAEGRELNHTYRHKDYATNVLSFPADVPDELLDIPLLGDLVICVPVVEREAAEQGKSLQAHWAHLVIHGCLHLLGYDHIEDDEAEEMEALERELLAELGHPDPYADDENDSITH
What is the function of this protein?
Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
What are the official names of this protein?
Endoribonuclease YbeY.
What is the protein family that this protein belongs to?
Belongs to the endoribonuclease YbeY family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: PYRE_XYLFT
Sequence: MSHYRQRFLQLALDSNALCFGEFTLKSGRISPYFFNAGHFNSGAKTAALAQCYADAIDAANMNFDLVFGPAYKGIPLATALACEYAQRERDLLLTFNRKEVKNHGEGGTLIGAPLNGRKILIIDDVITAGTAIREVLRIIRNAGGTPTGVAVALNRQEIASETNRQSSVQALMAETGIPVVAIATLNDLLAFVEENASLAKFYEPLLAYKTHYGTEAPD
What is the function of this protein?
Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
What are the official names of this protein?
Orotate phosphoribosyltransferase, OPRT, OPRTase.
What is the protein family that this protein belongs to?
Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.
Protein: SURA_PARXL
Sequence: MKKLRLATLAAGLAAAASFLSVAPVQAQALSGSGGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQLRQQVLNQMVLERIQLQKAKEDGITIDDATVQKTLERLAAANNLTLDVYRSRIEAQGVPWTTFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAPLNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSKLPPEFVKAASALRPGEVNPDLIRTSDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETVPEFERAMNSLQDGQISDPVRSEYGYHLIQVLGRRESEGSVAQQMDLARQAIGQRKAEQAYADWLRELRDTAYVEVKPTLSSTQ
What is the function of this protein?
Chaperone involved in the correct folding and assembly of outer membrane proteins.  Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins.  May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
What are the official names of this protein?
Chaperone SurA, Peptidyl-prolyl cis-trans isomerase SurA, PPIase SurA, Rotamase SurA.
What are the subcellular locations of this protein?
Periplasm. Note=Is capable of associating with the outer membrane.
Protein: CAPP_PHAVU
Sequence: MANRNLEKMASIDAQLRQLAPSKVSEDDKLIEYDALLLDRFLDILQNLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNVITSLDAGDSIVVAKSFSHMLNLANLAEEVQISRRRRNKLKKGDFADENNATTESDIEETLKKLVFELKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLSKLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWNGVPSFLRRVDTALNNIGIKERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYYSQIEDLMFELSMWRCNDELRVHADEVHRSSNKDEVAKHYIEFWKKVPTNEPYRVVLGEVRDRLYQTRERSRHLLSNGYSDIPEENTFTSVEEFLQPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSIVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQEWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVIAELPPDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSVDWYKNRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELVKVAKKFGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQCFGEQHLCFRTLQRFTAATLEHGMNPPISPKPEWRAMMDQMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVLDKNAKKNLSMLQEMYNQWPFFRVTLDLVEMVFAKGDPKIGALNDRLLVSKDLWPFGDQLRNKYEETKKLLLQVAGHKEILEGDPYLKQRLRLRHSPITTLNVFQAYTLKRIRDPNYKVKARPRISKESAEASKSADELIKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG
What is the function of this protein?
Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
What are the official names of this protein?
Phosphoenolpyruvate carboxylase, PEPC, PEPCase.
What is the protein family that this protein belongs to?
Belongs to the PEPCase type 1 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: OBG_PSEP1
Sequence: MKFVDEVSIRVKAGDGGNGCMSFRREKFIENGGPNGGDGGDGGSVYMIADENLNTLVDYRYTRHHEAQRGSNGGSTDCTGKKGEDLFLRVPVGTTVIDASTQEVIGDLVTPGQKLMVAQGGWHGLGNTRFKSSTNRAPRQTTPGKPGEQRDLKMEMKVLADVGLLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPNLGVVSVDRWKSFVIADIPGLIEGASEGAGLGIRFLKHLARTRVLLHLVDIAPLDESSPADAAEVIVNELTRFSPSLAERERWLVLNKADMVMDDERDERVQEVIDRLEWEGPVYVISAISKQGTDKLSHDLMRYLEDRADRLANDPAYAEELADLDQRIEDEARAQLQALDDARTLRRTGVKSVHDIGDDDGWDDDFEDDEDGPEIIYVRD
What is the function of this protein?
An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate.  Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.
What are the official names of this protein?
GTPase Obg, GTP-binding protein Obg.
What is the protein family that this protein belongs to?
Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: ZUPT_SALHS
Sequence: MLVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIMLLISLMEMLPAALDTEGMSPVLGYGMFIIGLLGYFGLDRLLPHAHPQDLMQKRQQPLPGSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAIFWAGISGMAEILGGVLAWLILGSLVSPIVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSIMGLSLVILQTIGIG
What is the function of this protein?
Mediates zinc uptake.  May also transport other divalent cations.
What are the official names of this protein?
Zinc transporter ZupT.
What is the protein family that this protein belongs to?
Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.
What are the subcellular locations of this protein?
Cell membrane; Multi-pass membrane protein.
Protein: YY1_ORYSJ
Sequence: MAVTRTALLVVLVAGAMTMTMRGAEAQQPSCAAQLTQLAPCARVGVAPAPGQPLPAPPAECCSALGAVSHDCACGTLDIINSLPAKCGLPRVTCQ
What are the official names of this protein?
Protein YY1.
What is the protein family that this protein belongs to?
Belongs to the A9/FIL1 family.
What are the subcellular locations of this protein?
Secreted.
Protein: RECX_FINM2
Sequence: MIIQKIEFNDKKDKFVIETDTKESFLLSYNDFEKFKIHNEMIIDDELYAHLLNISKFGEAFDISLNFLSYKLRTEKEIITKLKSKKFSTEIIDDVITKLKNLDLLDDYNYAKIFINDKINLTNYSKRRIINDLYQKGIDKKIYEDYLEEVFGYNMELDKATLIVETKINIWKEKYEGYELKNKIFTFLLQKGFSYDVAKQISGMY
What is the function of this protein?
Modulates RecA activity.
What are the official names of this protein?
Regulatory protein RecX.
What is the protein family that this protein belongs to?
Belongs to the RecX family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: NANA_SALAR
Sequence: MAKALQGVMAALLTPFDHQQQLDSESLRRLVRFNIEQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAGSQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQTSGDLFQMEQIRRAHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVQALREGDVAKAQRLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFAPVDEKYLPELKALAQQLLEEKA
What is the function of this protein?
Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate.
What are the official names of this protein?
N-acetylneuraminate lyase, NAL, Neu5Ac lyase, N-acetylneuraminate pyruvate-lyase, N-acetylneuraminic acid aldolase, Sialate lyase, Sialic acid aldolase, Sialic acid lyase.
What is the protein family that this protein belongs to?
Belongs to the DapA family. NanA subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: HUTU_CAEEL
Sequence: MNIPSLFVDPFSPLLEHPTEQRAKNVAHAPKRPCNLTQTEKMLAVRNALRYIPKEHHVLLATEFAEELNTYGHIYGYRFMPNFDLFAPPVSEIGAHCEQASAIILMILNNLDKRVAQFPQELVTYGGNGQVFSNWIQFRLVLRYLYTMTDHQTLVLYSGHPLGLFPSTPDSPRMTVTNGMMIPSYSTKELYDKYFALGVTQYGQMTAGSFCYIGPQGIVHGTTITVLNAGRRMGLDSLAGKVFVTAGLGGMSGAQPKAAKIAGCIGVIAEISDTALLKRHQQGWLDVYSKDLEEIVNWIKEYREKKEAISIGYLGNVVDLWERLAEEPECLVELGSDQTSLHNPFLGGFYPAGLTFEQSNQMMTSDPVKFKKLVQNSLIRQIAAIDKIAAKGMYFWDYGNAFLLECQRAGANLLREDAQDDKSFRYPSYMQDIMGDIFSMGFGPFRWVCTSGKPEDLRLTDQTACKIIDELKDTDVPEYVKQQYLDNKKWIEEAEKNKLVVGSQARILYSDRAGRVALASAFNELVKSGKVSAAIVISRDHHDVSGTDSPFRETSNVYDGSAFTADMAVQNCIGDSFRGATWVALHNGGGVGWGDVINGGFGIVLDGSSDAARRAEGMLNWDVPNGVTRRSWSGNAKAQEAIQRAEKQVDGLRVTLPVEADEELLKKLKF
What are the official names of this protein?
Probable urocanate hydratase, Urocanase, Imidazolonepropionate hydrolase.
What is the protein family that this protein belongs to?
Belongs to the urocanase family.
Protein: GPMA_THEPX
Sequence: MHKVVLLRHGESLWNMENRFTGWTDVDLSPKGIEEARESGKTLKAEGYTFDCAFTSVLKRAIRTLWIVLDELDRMWIPVYKSWRLNERHYGALQGLNKAETAKKYGEEQVKIWRRSADVRPPALEKDDPRYPGFDPRYADLSEEEIPLTENLIDTINRVIPYWESTIAPTIKSGKKVLIVAHGNSLRGLVKYLDNLSKQEIMELNIPTGIPLVYELDDDLKPIRHYYLADEEKVKEKKELVENQGKIQGNS
What is the function of this protein?
Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.
What are the official names of this protein?
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, BPG-dependent PGAM, PGAM, Phosphoglyceromutase, dPGM.
What is the protein family that this protein belongs to?
Belongs to the phosphoglycerate mutase family. BPG-dependent PGAM subfamily.
Protein: UBIB_ECO55
Sequence: MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWMPNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAFKEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGATLVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR
What is the function of this protein?
Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
What are the official names of this protein?
Probable protein kinase UbiB, Ubiquinone biosynthesis protein UbiB.
What is the protein family that this protein belongs to?
Belongs to the ABC1 family. UbiB subfamily.
What are the subcellular locations of this protein?
Cell inner membrane; Multi-pass membrane protein.
Protein: PPK5_CRYKY
Sequence: EGSGSGETSGMWFGPRL
What is the function of this protein?
Myoactive.
What are the official names of this protein?
Pyrokinin-5, CryKy-Capa-PK, FXPRL-amide.
What is the protein family that this protein belongs to?
Belongs to the pyrokinin family.
What are the subcellular locations of this protein?
Secreted.
Protein: RECA_LACDB
Sequence: MAKDEKKAALEAALKKIEKNFGKGAVMRMGEKVDTQISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGRENAKKYLEEHPDVSEDIQTQVRKAYGIDAESLEEKEDPEKVKEQRAKKAAPGEEKPAEPASPEKTDK
What is the function of this protein?
Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs.  It interacts with LexA causing its activation and leading to its autocatalytic cleavage.
What are the official names of this protein?
Protein RecA, Recombinase A.
What is the protein family that this protein belongs to?
Belongs to the RecA family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: IAA7_ARATH
Sequence: MIGQLMNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS
What is the function of this protein?
Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.  Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE).  Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
What are the official names of this protein?
Auxin-responsive protein IAA7, Auxin resistant 2, Indoleacetic acid-induced protein 7.
What is the protein family that this protein belongs to?
Belongs to the Aux/IAA family.
What are the subcellular locations of this protein?
Nucleus.
Protein: TRHDE_HUMAN
Sequence: MGEDDAALRAGSRGLSDPWADSVGVRPRTTERHIAVHKRLVLAFAVSLVALLAVTMLAVLLSLRFDECGASATPGADGGPSGFPERGGNGSLPGSARRNHHAGGDSWQPEAGGVASPGTTSAQPPSEEEREPWEPWTQLRLSGHLKPLHYNLMLTAFMENFTFSGEVNVEIACRNATRYVVLHASRVAVEKVQLAEDRAFGAVPVAGFFLYPQTQVLVVVLNRTLDAQRNYNLKIIYNALIENELLGFFRSSYVLHGERRFLGVTQFSPTHARKAFPCFDEPIYKATFKISIKHQATYLSLSNMPVETSVFEEDGWVTDHFSQTPLMSTYYLAWAICNFTYRETTTKSGVVVRLYARPDAIRRGSGDYALHITKRLIEFYEDYFKVPYSLPKLDLLAVPKHPYAAMENWGLSIFVEQRILLDPSVSSISYLLDVTMVIVHEICHQWFGDLVTPVWWEDVWLKEGFAHYFEFVGTDYLYPGWNMEKQRFLTDVLHEVMLLDGLASSHPVSQEVLQATDIDRVFDWIAYKKGAALIRMLANFMGHSVFQRGLQDYLTIHKYGNAARNDLWNTLSEALKRNGKYVNIQEVMDQWTLQMGYPVITILGNTTAENRIIITQQHFIYDISAKTKALKLQNNSYLWQIPLTIVVGNRSHVSSEAIIWVSNKSEHHRITYLDKGSWLLGNINQTGYFRVNYDLRNWRLLIDQLIRNHEVLSVSNRAGLIDDAFSLARAGYLPQNIPLEIIRYLSEEKDFLPWHAASRALYPLDKLLDRMENYNIFNEYILKQVATTYIKLGWPKNNFNGSLVQASYQHEELRREVIMLACSFGNKHCHQQASTLISDWISSNRNRIPLNVRDIVYCTGVSLLDEDVWEFIWMKFHSTTAVSEKKILLEALTCSDDRNLLNRLLNLSLNSEVVLDQDAIDVIIHVARNPHGRDLAWKFFRDKWKILNTRYGEALFMNSKLISGVTEFLNTEGELKELKNFMKNYDGVAAASFSRAVETVEANVRWKMLYQDELFQWLGKALRH
What is the function of this protein?
Specific inactivation of TRH after its release.
What are the official names of this protein?
Thyrotropin-releasing hormone-degrading ectoenzyme, TRH-DE, TRH-degrading ectoenzyme, Pyroglutamyl-peptidase II, PAP-II, TRH-specific aminopeptidase, Thyroliberinase.
What is the protein family that this protein belongs to?
Belongs to the peptidase M1 family.
What are the subcellular locations of this protein?
Membrane; Single-pass type II membrane protein.
Protein: MED21_DEBHA
Sequence: MTDRLTQLQVCLDQLVEQFNATVNYVNTNSEPGLLDEDPSSVSNLAANAPIPGVQQQPSQGSGGGSNKQTNAGNSVSNQPSAKAEAESNFENTINELSTDIILKSRQITMLIDSLPGIGVSPESQLNMVEDLAKQLEEVEKERIKKIEEKDKLLKWCESLIVEVATGISESRE
What is the function of this protein?
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes.  Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery.  Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
What are the official names of this protein?
Mediator of RNA polymerase II transcription subunit 21, Mediator complex subunit 21.
What is the protein family that this protein belongs to?
Belongs to the Mediator complex subunit 21 family.
What are the subcellular locations of this protein?
Nucleus.
Protein: AMPA_EDWI9
Sequence: MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKVGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVVQKTINTLNDTGSMEAVCFLTELHVKGRNTYWKVRQAVETAKETLYTFDQLKSNKVEARRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAGYLASQARQLADNYAGAVTTRVIGEQQMKELGMNAYLAVGQGSQNESLMSVIEYKGNPNPDARPIVLVGKGLTFDAGGISLKPGEGMDEMKYDMCGAASVYGVMRMAAELRLPLNIVGVLAGCENMPGGRAYRPGDILTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPELVVDVATLTGACVIALGHHLTGLMANHNPLASELLNAAEQAGDRAWRLPLGEEFQEQLDSNFADMANIGGRPGGAITAACFLARFTRKYNWAHLDIAGTAWRSGKAKGATGRPVAMLSQFLLNRAGLNGEE
What is the function of this protein?
Presumably involved in the processing and regular turnover of intracellular proteins.  Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides.
What are the official names of this protein?
Probable cytosol aminopeptidase, Leucine aminopeptidase, LAP, Leucyl aminopeptidase.
What is the protein family that this protein belongs to?
Belongs to the peptidase M17 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: EIF3E_BOVIN
Sequence: MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKLNQNSRSEAPNWAAQDSGFY
What is the function of this protein?
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis.  The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC).  The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition.  The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation.  The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression.  Required for nonsense-mediated mRNA decay (NMD); may act in conjunction with UPF2 to divert mRNAs from translation to the NMD pathway.  May interact with MCM7 and EPAS1 and regulate the proteasome-mediated degradation of these proteins.
What are the official names of this protein?
Eukaryotic translation initiation factor 3 subunit E, eIF3e, Eukaryotic translation initiation factor 3 subunit 6, eIF-3 p48.
What is the protein family that this protein belongs to?
Belongs to the eIF-3 subunit E family.
What are the subcellular locations of this protein?
Cytoplasm. Nucleus, PML body.
Protein: RL13_WOLSU
Sequence: MNMTKMAKANEIKREWVVLDAEGKTFGRLMTQVATLLRGKHRPDYTPHVDCGDFVVIVNASKVVFSGLKLEAKEYFTHSGYFGSTKSQTLQELLEKNPEKLFRLAARGMLPKTKLGRAMLKKLKVYAGAEHPHTAQVTK
What is the function of this protein?
This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself.  It is important during the early stages of 50S assembly.
What are the official names of this protein?
50S ribosomal protein L13.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL13 family.