PharMolix/UniProtQA huggingface dataset:
Protein: RRP43_YEAST
Sequence: MAESTTLETIEIHPITFPPEVLARISPELSLQRHLSLGIRPCLRKYEEFRDVAIENNTLSRYADAGNIDTKNNILGSNVLKSGKTIVITSITGGIIEETSAAIKDLDDFGEEELFEVTKEEDIIANYASVYPVVEVERGRVGACTDEEMTISQKLHDSILHSRILPKKALKVKAGVRSANEDGTFSVLYPDELEDDTLNETNLKMKRKWSYVLYAKIVVLSRTGPVFDLCWNSLMYALQSVKLPRAFIDERASDLRMTIRTRGRSATIRETYEIICDQTKSVPLMINAKNIAFASNYGIVELDPECQLQNSDNSEEEEVDIDMDKLNTVLIADLDTEAEETSIHSTISILAAPSGNYKQLTLVGGGAKITPEMIKRSLLLSRVRADDLSTRFNI
What is the function of this protein?
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events.  In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm.  In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and in RNA surveillance pathways, preventing translation of aberrant mRNAs.  The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes.  RRP43 is part of the hexameric ring of RNase PH domain-containing subunits proposed to form a central channel which threads RNA substrates for degradation.
What are the official names of this protein?
Exosome complex component RRP43, Ribosomal RNA-processing protein 43.
What is the protein family that this protein belongs to?
Belongs to the RNase PH family.
What are the subcellular locations of this protein?
Cytoplasm. Nucleus, nucleolus.
Protein: PCP_YERE8
Sequence: MKSVLITGFEPFGGERVNPSWEVVKQLNDFMLGGVKVVARQLPCAFGEALTALNAAIDEIQPVLVLAIGQAGGRADISIERVAINVDDARIADNLGNQPIDQPIVENGPAAYFTRLPIKAMVQGIREAGIPASVSQTAGTYVCNHVMYGLLHRLHQTNDEIKGGFIHIPYLPEQAVNHPGAPSMSAHSVVIALELAISIALQIDHDSHIAGGAIH
What is the function of this protein?
Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
What are the official names of this protein?
Pyrrolidone-carboxylate peptidase, 5-oxoprolyl-peptidase, Pyroglutamyl-peptidase I, PGP-I, Pyrase.
What is the protein family that this protein belongs to?
Belongs to the peptidase C15 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: TIG_POLAQ
Sequence: MAVQIENLGSVDRKTTLEFARADLAKLREARLAKVGKTMKVAGFRPGKVPKSMVEKQYGMQVDFELQFDKASDLFYELCQKEGIPLAGQPRLEPKSELEAETIAFDVFFEVLPEVKMGDFSAAEVTKYTTEIGEAEIDRAIDVLRKQQVHYHARGEAGAHGDGGANTAAQNGDQVVIDFVGKLDGVEFAGGKAENFEFVLGEGRMLPEFEAAALGLKVGESKSFPLTFPADYHGKDVAGKTAEFTITVKSVNWAHMPVVDDAFALSLGVAEGGVAKMREEVKENLDREVKRRITSLLKSEVMDKLNALCELDVPKSLVTSEQERLVQSARQDLMQRGVPNAKDAPIPAEIFAEQATKRVRLGLILGELVKKQNLAATTDQIKAEIEEQAATYEDPKEVVRWYYSNPSRLKDIENLVLEDNVIKHFTSLAKVVDKAITFEELSKLN
What is the function of this protein?
Involved in protein export.  Acts as a chaperone by maintaining the newly synthesized protein in an open conformation.  Functions as a peptidyl-prolyl cis-trans isomerase.
What are the official names of this protein?
Trigger factor, TF, PPIase.
What is the protein family that this protein belongs to?
Belongs to the FKBP-type PPIase family. Tig subfamily.
What are the subcellular locations of this protein?
Cytoplasm. Note=About half TF is bound to the ribosome near the polypeptide exit tunnel while the other half is free in the cytoplasm.
Protein: Y020_GEOSW
Sequence: MMRGGMGNMQKMMKQMQKMQKEMQKAQEQLAEKTVEGTAGGGMVTVIANGHKQILEVKIKEEVVDPEDIEMLQDLVLAATNDALKKADELAAEMMGQFTKGLNIPGLF
What is the function of this protein?
Binds to DNA and alters its conformation.  May be involved in regulation of gene expression, nucleoid organization and DNA protection.
What are the official names of this protein?
Nucleoid-associated protein GWCH70_0020.
What is the protein family that this protein belongs to?
Belongs to the YbaB/EbfC family.
What are the subcellular locations of this protein?
Cytoplasm, nucleoid.
Protein: RDRP_HASV
Sequence: MYAKATDVARVYAAADVAYANVLQQRAVKLDFAPPLKALETLHRLYYPLRFKGGTLPPTQHPILAGHQRVAEEVLHNFARGRSTVLEIGPSLHSALKLHGAPNAPVADYHGCTKYGTRDGSRHITALESRSVATGRPEFKADASLLANGIASRTFCVDGVGSCAFKSRVGIANHSLYDVTLEELANAFENHGLHMVRAFMHMPEELLYMDNVVNAELGYRFHVIEEPMAVKDCAFQGGDLRLHFPELDFINESQERRIERLAARGSYSRRAVIFSGDDDWGDAYLHDFHTWLAYLLVRNYPTPFGFSLHIEVQRRHGSSIELRITRAPPGDRMLAVVPRTSQGLCRIPNIFYYADASGTEHKTILTSQHKVNMLLNFMQTRPEKELVDMTVLMSFARARLRAIVVASEVTESSWNISPADLVRTVVSLYVLHIIERRRAAVAVKTAKDDVFGETSFWESLKHVLGSCCGLRNLKGTDVVFTKRVVDKYRVHSLGDIICDVRLSPEQVGFLPSRVPPARVFHDREELEVLREAGCYNERPVPSTPPVEEPQGFDADLWHATAASLPEYRATLQAGLNTDVKQLKITLENALKTIDGLTLSPVRGLEMYEGPPGSGKTGTLIAALEAAGGKALYVAPTRELREAMDRRIKPPSASRTQHVALAILRRATAEGAPFATVVIDECFMFPLVYVAIVHALSPSSRIVLVGDVHQIGFIDFQGTSANMPLVRDVVKQCRRRTFNQTKRCPADVVATTFFQSLYPGCTTTSGCVASISHVAPDYRNSQAQTLCFTQEEKSRHGAEGAMTVHEAQGRTFASVILHYNGSTAEQKLLAEKSHLLVGITRHTNHLYIRDPTGDIERQLNHSAKAEVFTDIPAPLEITTVKPSEEVQRNEVMATIPPQSPTPHGAIHLLRKNFGDQPDCGCVALAKTGYEVFGGRAKINVELAEPDATPKPHRAFQEGVQWVKVTNASNKHQALQTLLSRYTKRSADLPLHEAKEDVKRMLNSLDRHWDWTVTEDARDRAVFETQLKFTQRGGTVEDLLEPDDPYIRDIDFLMKTQQKVSPKPINTGKVGQGIAAHSKSLNFVLAAWIRILEEILRTGSRTVRYSNGLPDEEEAMLLEAKINQVPHATFVSADWTEFDTAHNNTSELLFAALLERIGTPAAAVNLFRERCGKRTLRAKGLGSVEVDGLLDSGAAWTPCRNTIFSAAVMLTLFRGVKFAAFKGDDSLLCGSHYLRFDASRLHMGERYKTKHLKVEVQKIVPYIGLLVSAEQVVLDPVRSALKIFGRCYTSELLYSKYVEAVRDITKGWSDARYHSLLCHMSACYYNYAPESAAYIIDAVVRFGRGDFPFEQLRVVRAHVQAPDAYSSTYPANVRASCLDHVFEPRQAAAPAGFVATCAKPETPSSLTAKAGVSATTSHVATGTAPPESPWDAPAANSFSELLTPETPSTSSSAVIVFIGLLYIVWKVAQWWRHRKRTEDLNSRKPPSQDRQSRSSECLDRSGERTGSSLTAPTAPSPSFSFSERARLATGPTVAAATSPSATPSCATDQVAARTTPDFAPFLGSQSARAVSKPYRPPTTARWKEVTPLHAWKGVTGDRPEVREDPETAAVVQALISGRYPQKTKLSSDASKGYSRTKGCSQSTSFPAPSADYQARDCQTVRVCRAAAEMARSCIHEPLASSAASADLKRIRSTSDSVPDVKISKSA
What is the function of this protein?
RNA-dependent RNA polymerase replicates the viral genome composed of 2 RNA segments, RNA1 and RNA2.
What are the official names of this protein?
Methyltransferase/helicase/RNA-directed RNA polymerase.
What is the protein family that this protein belongs to?
Belongs to the ssRNA positive-strand viruses RNA-directed RNA polymerase family.
What are the subcellular locations of this protein?
Host cytoplasm. Note=Localizes to punctate structures partially overlapping late endosomes.
Protein: YQGF_BACMK
Sequence: MRILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGLPKNMNGTIGPRGEACQQFAENLRNLLQLEVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAAVVILQGFLDSK
What is the function of this protein?
Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.
What are the official names of this protein?
Putative pre-16S rRNA nuclease.
What is the protein family that this protein belongs to?
Belongs to the YqgF nuclease family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: MTR1A_PIG
Sequence: YCYICHSLKYDRWYSNRNSLCCVFLICVLTLVAIVPNLCMGTLQYDPRIYSCTFAQSVSSAYTIAVVVFHFLVPMVIVIFRYLRIWVLVLQIRWRAKPENNPRLKPQDFRNFVTMFVVFVLFAICWAPLNFIGLAVASDPASMAPRIPEWLFVA
What is the function of this protein?
High affinity receptor for melatonin.  Likely to mediate the reproductive and circadian actions of melatonin.  The activity of this receptor is mediated by pertussis toxin sensitive G proteins that inhibit adenylate cyclase activity.
What are the official names of this protein?
Melatonin receptor type 1A, Mel-1A-R, Mel1a receptor.
What is the protein family that this protein belongs to?
Belongs to the G-protein coupled receptor 1 family.
What are the subcellular locations of this protein?
Cell membrane; Multi-pass membrane protein.
Protein: 3HIDH_RAT
Sequence: MAASLGFRGAASGLRYWSGRRRPVGSLAAVCSRSMASKTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQYLREEETF
What are the official names of this protein?
3-hydroxyisobutyrate dehydrogenase, mitochondrial, HIBADH.
What is the protein family that this protein belongs to?
Belongs to the HIBADH-related family. 3-hydroxyisobutyrate dehydrogenase subfamily.
What are the subcellular locations of this protein?
Mitochondrion.
Protein: RL22_BURTA
Sequence: MEVKAIHRGARISAQKTRLVADQIRGLPVDKALNVLTFSPKKAAGIVKKVVLSAIANAEHNEGADIDELKIKSIYVDKAASLKRFTARAKGRGNRIEKQSCHITVTVGN
What is the function of this protein?
The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
What are the official names of this protein?
50S ribosomal protein L22.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL22 family.
Protein: LEXA_KLEP7
Sequence: MKALTTRQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGAIEIVSGASRGIRLLTEEEQGLPLIGRVAAGEPLLAQQHIEGHYQVDPSMFKPNADFLLRVSGMSMKDIGILDGDLLAVHKTQDVRNGQVVVARIDEEVTVKRLKKQGNVVELLPENSEFSPIVVDLRQQSFTIEGLAVGVIRNGEWL
What is the function of this protein?
Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA.  Binds to the 16 bp palindromic sequence 5'-CTGTATATATATACAG-3'.  In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
What are the official names of this protein?
LexA repressor.
What is the protein family that this protein belongs to?
Belongs to the peptidase S24 family.
Protein: RS13_BACLD
Sequence: MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQILKEAGVSEDTRVRDLTEEELGKIRDVIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK
What is the function of this protein?
Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA.  In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement.  Contacts the tRNAs in the A and P-sites.
What are the official names of this protein?
30S ribosomal protein S13.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS13 family.
Protein: RR8_SPIMX
Sequence: MSNDIISNMITSIRNAILSKTKTVDILATTTTRSIAKILLQEGFIDGLRERQENGRRLLLLTLHYERKNKSKITTSLRRISKPGLRVYSNHQEIPKVLGGIGIVILSTSKGIMVDREARHKKIGGEIICYVS
What is the function of this protein?
One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.
What are the official names of this protein?
30S ribosomal protein S8, chloroplastic.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS8 family.
What are the subcellular locations of this protein?
Plastid, chloroplast.
Protein: TELO2_MOUSE
Sequence: MDPALSAVRLTVQEAIHILSSSEDAGHILSTLGTLKRYLGGTEDPVLPEEKEEFATVHFSAVLRCLVSKLSPGWLELSPGGQLERLWESFFLDGPPDQAFLVLMEAIESTAGPSFRLMKMAQLLDTFLSTGRVAALMEEQCRPQTKPSFPLFQETLLSKVVGLPDLLGNCLQRDNLTQFFPQNYFPLLGQEVVQALKAVVNFLQDGLDCSVSFVSRVLGKVCIQGRKREILSVLVPQLTVLTQDSCLWQRVCWRLVEQVPDRAVEAVLTGLVEAAPRPEVLSRLLGNLVVKNKKARFVVTRKLLLLQYQHTTPMVQSLLGYLALDSQRRPLLIQVLKELLETWGCSSAVRHTPLEQQCYISKAILVCLAHLGEPELQDIRDELLASMMAGVKCRLDSSLPPVRRLGMIVAEVISSRIHPEGPLLKFQYEDDEMSRELLALATPEPAGDCSSVSRGPSPAPVDTESPVEMPEKAVESDVPPTQPQGSDSELDSDDEFIPYDMSGDRELKSSKEPLYIRDCVEALTTSEDMERWEASLKGLEGLVYRSPTATREVSVELAKVLLHLEEKTCVAEFEQLRQSALVAVTVTDPEQVAKYLTSQFYGLNYSLRQRMDILDVLVLAAQALSRPKSLQRRSQHGPPVPGTMCSPALAVSQTGNVAAPDWQVVVEERIRSKTRRFSKGCPQRELSGVPNEFSSVAGYFFFPLLQHFDRPLVTFDLLGDDQLVLGRLTHTLASLMYLAVNTTVAVPMGKALLEFVWALRFHVDIYVRRGLLSAVSSVLLSVPTERLLGDLPDELLEARSWLADVAEKDVDEDCRELAVRALLLLERLKDKLLSSSSPQP
What is the function of this protein?
Regulator of the DNA damage response (DDR).  Part of the TTT complex that is required to stabilize protein levels of the phosphatidylinositol 3-kinase-related protein kinase (PIKK) family proteins.  The TTT complex is involved in the cellular resistance to DNA damage stresses, like ionizing radiation (IR), ultraviolet (UV) and mitomycin C (MMC).  Together with the TTT complex and HSP90 may participate in the proper folding of newly synthesized PIKKs.  Promotes assembly, stabilizes and maintains the activity of mTORC1 and mTORC2 complexes, which regulate cell growth and survival in response to nutrient and hormonal signals.  May be involved in telomere length regulation (By similarity).
What are the official names of this protein?
Telomere length regulation protein TEL2 homolog.
What is the protein family that this protein belongs to?
Belongs to the TEL2 family.
What are the subcellular locations of this protein?
Cytoplasm. Membrane. Nucleus. Chromosome, telomere.
Protein: RL10_FLAPJ
Sequence: MTREEKSIAIGDLTEKLAGTNILYVADISGLNAETTSNLRRACFKAGIKLEVVKNTLLVKAMEASDKDFGDLPLTLKGNTSIFFADVANGPAKIIKDFRKKSDKPLLKGAFINDEIYIGDNLLDSLVNLKSRDEVIGEIIGLLQSPAKRVIAALLNNAESKGEVAE
What is the function of this protein?
Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.
What are the official names of this protein?
50S ribosomal protein L10.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL10 family.
Protein: VES_ECO7I
Sequence: MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIAANGEFSLFPGMERIVTLLEGGEMFLESTDRFNHTLKPLQPFAFAADQVVKAKLTAGQMSMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFDGRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ
What are the official names of this protein?
Protein Ves.
What is the protein family that this protein belongs to?
Belongs to the Ves family.
Protein: ITR1_CUCMA
Sequence: RVCPRILMECKKDSDCLAECVCLEHGYCG
What is the function of this protein?
Inhibits trypsin.
What are the official names of this protein?
Trypsin inhibitor 1, CMTI-I, ITD-I, Trypsin inhibitor I.
What is the protein family that this protein belongs to?
Belongs to the protease inhibitor I7 (squash-type serine protease inhibitor) family.
What are the subcellular locations of this protein?
Secreted.
Protein: RUVB_RHOBA
Sequence: MIDRLMAREAIYQQSNPDPGGDPPEDGPPHGKNAADGGDEPDRGPDPDVTLRPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIPSEMKTTVQMANGAGLKAPRDLLPYLTNVSRGSVLFIDEIHRVPRAIEEYLYTAMEDFRIDIVLGEGVNARTLNLSLEPFTLIGATTRAGMLTAPLRDRFQIREHLGWYTRKELAEIVLRNSKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVCEAALDMIGIDHLGLDKQDRNYLDTLMRVFLGGPAGLDAIAHTMNVSSDTLEDEVEPFLLRSELLVRTRRGRLATPKAFEHMKRQMPDRPLS
What is the function of this protein?
The RuvA-RuvB-RuvC complex processes Holliday junction (HJ) DNA during genetic recombination and DNA repair, while the RuvA-RuvB complex plays an important role in the rescue of blocked DNA replication forks via replication fork reversal (RFR).  RuvA specifically binds to HJ cruciform DNA, conferring on it an open structure.  The RuvB hexamer acts as an ATP-dependent pump, pulling dsDNA into and through the RuvAB complex.  RuvB forms 2 homohexamers on either side of HJ DNA bound by 1 or 2 RuvA tetramers; 4 subunits per hexamer contact DNA at a time.  Coordinated motions by a converter formed by DNA-disengaged RuvB subunits stimulates ATP hydrolysis and nucleotide exchange.  Immobilization of the converter enables RuvB to convert the ATP-contained energy into a lever motion, pulling 2 nucleotides of DNA out of the RuvA tetramer per ATP hydrolyzed, thus driving DNA branch migration.  The RuvB motors rotate together with the DNA substrate, which together with the progressing nucleotide cycle form the mechanistic basis for DNA recombination by continuous HJ branch migration.  Branch migration allows RuvC to scan DNA until it finds its consensus sequence, where it cleaves and resolves cruciform DNA.
What are the official names of this protein?
Holliday junction branch migration complex subunit RuvB.
What is the protein family that this protein belongs to?
Belongs to the RuvB family.
Protein: TRMB_POLSJ
Sequence: MIENPSPSAANLPEHPSTDASHPRNIRSFVRRTGRTTVGQAKAFADVGPRFLLAYKAEPLDFAAAFGRVAPTILEIGFGMGEATAHIAALSPDKNFLCCEVHTPGVGALLKRIQEQTLGNIRILQHDAVEVIDNMLPAGSLDGVHIFFPDPWHKKKHNKRRLIQAPLIAKLAARLKPGGYLHCATDWQPYAEQILEVLSAEALLKNTADASGGGYAPKPDYRPLTKFENRGIKLGHGVWDVVFTRV
What is the function of this protein?
Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
What are the official names of this protein?
tRNA (guanine-N(7)-)-methyltransferase, tRNA (guanine(46)-N(7))-methyltransferase, tRNA(m7G46)-methyltransferase.
What is the protein family that this protein belongs to?
Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
Protein: Y508_MYCTU
Sequence: MSRPQVELLTRAGCAICVRVAEQLAELSSELGFDMMTIDVDVAASTGNPGLRAEFGDRLPVVLLDGREHSYWEVDEHRLRADIARSTFGSPPDKRLP
What are the official names of this protein?
Uncharacterized protein Rv0508.
Protein: KN1_SOLLC
Sequence: MENNNYNNHVSGENSGGQRGHFFYGGNQVLGGAAPIYGRGGDCYDPMIVKTEGGGSTSHHNHTFHYPSIIRNHHHDSTETSGGGAGAGEVIEALKAKIIAHPQCSNLLDAYMDCQKVGAPPEVAARLSAVRQEFEARQRRSLTDRDVSKDPELDQFMEAYYDMLVKYREELTRPLQEAMEFMQKIEAQLNMLGNAPVRIFNSEDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLITWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAAALYMEGHYMGEGPFRLGQ
What is the function of this protein?
Appears to be involved in meristem formation and in the regulation of leaf morphology.  Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants.  Probably binds to the DNA sequence 5'-TGAC-3'.
What are the official names of this protein?
Homeotic protein knotted-1, TKN1.
What is the protein family that this protein belongs to?
Belongs to the TALE/KNOX homeobox family.
What are the subcellular locations of this protein?
Nucleus.
Protein: ATPF2_XANP2
Sequence: MVAQAAPPAGTAGQGTHEAASAAHGAAAAHGAAEEGHGKKSHFPPFDATTFASQLLWLVLSFGLLYLLMSRVALPRIGRILEERHDRIADDLEEAAKHKAESEAAQASYEKALAEARAKANAIAGETRNRLAADSEANRKSLEAGLAVKLATAEQSIASTKTEALTHVRGIAVDATHAIVSTLIGSSPAQSDVEKAVDVALVKKDAA
What is the function of this protein?
Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).
What are the official names of this protein?
ATP synthase subunit b 2, ATP synthase F(0) sector subunit b 2, ATPase subunit I 2, F-type ATPase subunit b 2, F-ATPase subunit b 2.
What is the protein family that this protein belongs to?
Belongs to the ATPase B chain family.
What are the subcellular locations of this protein?
Cell inner membrane; Single-pass membrane protein.
Protein: RS19_RALPJ
Sequence: MTRSVKKGPFIDAHLLKKVEAAVQTKDKKPIKTWSRRSTILPDFIGLTIAVHNGRQHVPVYVTENMVGHKLGEFALTRTFKGHAADKKAKR
What is the function of this protein?
Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
What are the official names of this protein?
30S ribosomal protein S19.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS19 family.
Protein: PEX3_BOVIN
Sequence: MFRSTWNFLKRHKKKCIFLGTVLGGVYILGKYGQKKIREIQEREAAEYIAQARRQYHFESNQRTCNMTVLSMLPTLREALMQQLNSESLTALLKTRPSNKLEIWEDLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNAAVGKNGTTVLAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDLVEQHKSSSWINNDGSKSLLCHYMMPDEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFSTVLNTCLSRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVCSETPSHFVQDLLMMEQVKDFAANVYEAFSTPQQLEK
What is the function of this protein?
Involved in peroxisome biosynthesis and integrity.  Assembles membrane vesicles before the matrix proteins are translocated.  As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes (By similarity).
What are the official names of this protein?
Peroxisomal biogenesis factor 3, Peroxin-3, Peroxisomal assembly protein PEX3.
What is the protein family that this protein belongs to?
Belongs to the peroxin-3 family.
What are the subcellular locations of this protein?
Peroxisome membrane; Multi-pass membrane protein.
Protein: SMTA_ASTBI
Sequence: MSSPLITDFLHQAGRAAVIAGGLGTELQRHGADLNDPLWSAKCLLSCPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDSRILKQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAESCDKVVAVGINCTPPRFIHDLILLLKKVTAKPIVIYPNSGETYDAIRKEWGQNSGVTDEDFVSYVDKWCESGASLVGGCCRTTPDTIRGIYKILSSGQSPTFSAK
What is the function of this protein?
Catalyzes the methylation of selenocysteine with S-methylmethionine as donor.  Does not methylate cysteine.
What are the official names of this protein?
Selenocysteine methyltransferase, SECYS-MT, SECYS-methyltransferase.
Protein: RUVA_MYCS5
Sequence: MTLYKIGEIVYKNNNNIILESKGEGNLVTICDNSRYSKGEKLKLYLYEVKNDYIQQTYGFKTFKERLLFTDLISIDKIGPKTAMLILDQNWELVANLIAEGDWKEISKINYISDKSAKLICVELKDKWAKIIQNKEVKKFDDITNIKELKQTLNKLGFKASDIDYAVNNISSTKELDLMVEESINLITTQMHANNQTT
What is the function of this protein?
The RuvA-RuvB-RuvC complex processes Holliday junction (HJ) DNA during genetic recombination and DNA repair, while the RuvA-RuvB complex plays an important role in the rescue of blocked DNA replication forks via replication fork reversal (RFR).  RuvA specifically binds to HJ cruciform DNA, conferring on it an open structure.  The RuvB hexamer acts as an ATP-dependent pump, pulling dsDNA into and through the RuvAB complex.  HJ branch migration allows RuvC to scan DNA until it finds its consensus sequence, where it cleaves and resolves the cruciform DNA.
What are the official names of this protein?
Holliday junction branch migration complex subunit RuvA.
What is the protein family that this protein belongs to?
Belongs to the RuvA family.
Protein: ATPD_FRATT
Sequence: MTNISVIAKPYAKAAFEFANEHNLLQQWSKLLQTFSELIKDKSVAAIVSSPTISQIEVVDALKKQLDENFFNFLALIAENKKMLIMPEIADQFESIKNIHNNVRVADVTLAYATDKNILDSLKTSLEKKFGCTIDMHINIDPAIIGGAVVKVGDTVIDSSVSGHLEKLKSILLS
What is the function of this protein?
This protein is part of the stalk that links CF(0) to CF(1).  It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.
What are the official names of this protein?
ATP synthase subunit delta, ATP synthase F(1) sector subunit delta, F-type ATPase subunit delta, F-ATPase subunit delta.
What is the protein family that this protein belongs to?
Belongs to the ATPase delta chain family.
What are the subcellular locations of this protein?
Cell inner membrane; Peripheral membrane protein.
Protein: MHPC_KLEP7
Sequence: MSYQPQTEAATSRFLNVDEGGRTLRIHINDCGDGKETVVMLHGSGPGATGWANFSRNIDPLVEAGYRVLLLDCPGWGKSDAIVNSGSRSDLNARILKSVVDQLGIDKVHLLGNLMGGHSAVAFTLSWPERVAKLVLMGGGTGGMSLFTPMPTEGIKLLNALYREPTIENLKKMMSIFVFDTRDLTEALFEARLNNMLSRRDHLDNFVKSLEANPKQFPDFGPRLGEISAPTLIVWGRNDRFVPMDAGLRLLAGIAGSELHIYRDCGHWAQWEHADSFNQLVLNFLARA
What is the function of this protein?
Catalyzes the cleavage of the C5-C6 bond of 2-hydroxy-6-oxononadienedioate and 2-hydroxy-6-oxononatrienedioate, a dienol ring fission product of the bacterial meta-cleavage pathway for degradation of phenylpropionic acid.
What are the official names of this protein?
2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase, 2-hydroxy-6-ketonona-2,4-diene-1,9-dioic acid 5,6-hydrolase, 2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioic acid 5,6-hydrolase, 2-hydroxy-6-oxonona-2,4-diene-1,9-dioic acid 5,6-hydrolase.
What is the protein family that this protein belongs to?
Belongs to the AB hydrolase superfamily. MhpC family.
Protein: NADA_THEP1
Sequence: MVDEILKLKKEKGYIILAHNYQIPELQDIADFVGDSLQLARKAMELSEKKILFLGVDFMAELVKILNPDKKVIVPDKSATCPMANRLTPEIIREYREKFPGAPVVLYVNSTSECKTLADVICTSANAVEVVKRLDSSVVIFGPDRNLGEYVAEKTGKKVITIPENGHCPVHQFNAESIDAVRKKYPDAKVIVHPESPKPVRDKADYVGSTGQMEKIPEKDPSRIFVIGTEIGMIHKLKKKFPDREFVPLEMAVCVNMKKNTLENTLHALQTESFEVILPKEVIEKAKKPILRMFELMG
What is the function of this protein?
Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
What are the official names of this protein?
Quinolinate synthase.
What is the protein family that this protein belongs to?
Belongs to the quinolinate synthase family. Type 2 subfamily.
What are the subcellular locations of this protein?
Cytoplasm.