PharMolix/UniProtQA huggingface dataset:
Protein: LPQH_MYCTA
Sequence: MKRGLTVAVAGAAILVAGLSGCSSNKSTTGSGETTTAAGTTASPGAASGPKVVIDGKDQNVTGSVVCTTAAGNVNIAIGGAATGIAAVLTDGNPPEVKSVGLGNVNGVTLGYTSGTGQGNASATKDGSHYKITGTATGVDMANPMSPVNKSFEIEVTCS
What is the function of this protein?
Might be involved in ligand transport (By similarity).  A host TLR2 agonist (toll-like receptor), shown experimentally for human and mouse (PubMed:16547269, PubMed:19362712).  Acts in host macrophages to modify the expression of different subsets of interferon-gamma-induced (IFN-g) genes, possibly by chromatin remodeling (PubMed:19362712).  Represses IFN-g induction of mouse macrophage MHC class II transactivator (Ciita), greatly enhances IFN-g induction of mouse macrophage inducible nitric oxide synthase (iNOS, Nos2) (PubMed:19362712).  At least for Ciita repression, acts via mouse TLR2 and MAPK to inhibit IFN-g-induced enrichment of acetylated histones H3 and H4 at the host Ciita but not at Nos2 loci (PubMed:19362712).  Host Ciita regulates the expression of MHC-II and other genes involved in Ag processing and presentation, thus its repression contributes to immune envasion by M. tuberculosis (PubMed:19362712).  Requires both host TLR1 and TLR2 as coreceptors to elicit host response in mouse, although TLR6 may play a redundant role, and a partial requirement for CD14 as an accessory receptor (PubMed:19362712).
What are the official names of this protein?
Lipoprotein LpqH, 19 kDa lipoprotein, Putative transporter LpqH.
What is the protein family that this protein belongs to?
Belongs to the mycobacterial 19 kDa antigen family.
What are the subcellular locations of this protein?
Cell membrane; Lipid-anchor. Extracellular vesicle, bacterial extracellular vesicle. Note=Found in bacterial extracytoplasmic vesicles both in culture supernatant and isolated from infected mouse macrophages: there is almost no co-localization of mouse and M.tuberculosis markers in the vesicles, suggesting they do not mix (PubMed:26109643).
Protein: Y5110_BACLD
Sequence: MQNRIEITEANLRNDRLVLTSEINDGAERKPAGRMLTDSDHFAFVYILEQDESFEYVILNEGIWSDLKAALDAGLPVFLHIGNTELELNGFHDELGYLIENIKDNANYGEEMEERVKRIFL
What are the official names of this protein?
UPF0738 protein BLi01253/BL05110.
What is the protein family that this protein belongs to?
Belongs to the UPF0738 family.
Protein: NUOB2_ACICJ
Sequence: MRFTFGKGATGQQLSTTAPLLRGLGTAGQPAAPSPGGGTFTDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSCCYVEMATAFTSKFDIARFGSEVLRATPREADLIVISGTVFVKMAPVIKYLYDQMLEPRWVISMGACANSGGMYDIYAVVQGADSFLPVDVYVPGCPPRPDALLEGLMLLQNSIGSERRPLSWLVGPNGAEKIERPSFRDLKHQERQAAGSLPTPDSV
What is the function of this protein?
NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.  The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone.  Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
What are the official names of this protein?
NADH-quinone oxidoreductase subunit B 2, NADH dehydrogenase I subunit B 2, NDH-1 subunit B 2.
What is the protein family that this protein belongs to?
Belongs to the complex I 20 kDa subunit family.
What are the subcellular locations of this protein?
Cell inner membrane; Peripheral membrane protein; Cytoplasmic side.
Protein: 5HT1B_SPAEH
Sequence: MEEPGARCAPPPPAGSQTQTPSSNLSHNCSADSYIYQDSIALPWKVLLVALLALITLATTLSNAFVIATVYRTRKLHTPANYLIASLAVTDLLVSILVMPISTMYTVTGRWTLGQVVCDFWLSSDITCCTASIMHLCVIALDRYWAITDAVEYSAKRTPRRAAVMIALVWVFSISISLPRFFWRQAKAEEEVLDCLVNTDHVLYTVYSTVGAFYLPTLLLIALYGRIYVEARSRILKQTPNKTGKRLSRAQLISDSPGSTSSVTSINSRVPDVPSESGSPVYVNQVKVRVSDALLEKKKLMAARERKATKTLGIILGAFIVCWLPFFIISLVMPICKDACWFHMAIFDFFNWLGYLNSLINPIIYTMPNEDFKQAFHKLIRFKCTG
What is the function of this protein?
G-protein coupled receptor for 5-hydroxytryptamine (serotonin).  Also functions as a receptor for various alkaloids and psychoactive substances.  Ligand binding causes a conformation change that triggers signaling via guanine nucleotide-binding proteins (G proteins) and modulates the activity of down-stream effectors, such as adenylate cyclase.  Signaling inhibits adenylate cyclase activity.  Arrestin family members inhibit signaling via G proteins and mediate activation of alternative signaling pathways.  Regulates the release of 5-hydroxytryptamine, dopamine and acetylcholine in the brain, and thereby affects neural activity, nociceptive processing, pain perception, mood and behavior.  Besides, plays a role in vasoconstriction of cerebral arteries (By similarity).
What are the official names of this protein?
5-hydroxytryptamine receptor 1B, 5-HT-1B, 5-HT1B, Serotonin receptor 1B.
What is the protein family that this protein belongs to?
Belongs to the G-protein coupled receptor 1 family.
What are the subcellular locations of this protein?
Cell membrane; Multi-pass membrane protein.
Protein: TIG_LATSS
Sequence: MSAKWEKKGANDGELTFEIDLDKISEGLDVAFKRVRKNINTPGFRKGKMPRQIFNKMYGEEALYEDALNAVLPEAYEAAVAEAGIDPVDQPQINVEKMEKGEAWVLTAQVTVKPEVKLGDYKGLEVPKQSRRITIKDVEQELETRRERQAELVLKEDAAAENGDTVVIDYAGSVDGVPFDGGQADNYSLELGSNSFIPGFEDQLVGHKAEEDVDVTVTFPKDYQAEELAGKEAIFKVKIHEVKGKELPELDDEFAKDIDEDVDSLDELKEKIREELKQQKNDAADAAIQDTAVAKATENATIPELPQAMIDEEINSQLQQYLGNMQQQGINPEMYYQITGTTEDDLKKQFAGDADKRVKTSLVLEAVVEAEKIEATDEEVAAELKSLAEQYNMEESAVRSVLSDDMLKHDIGVKKAIEVIADSAVEVKDAK
What is the function of this protein?
Involved in protein export.  Acts as a chaperone by maintaining the newly synthesized protein in an open conformation.  Functions as a peptidyl-prolyl cis-trans isomerase.
What are the official names of this protein?
Trigger factor, TF, PPIase.
What is the protein family that this protein belongs to?
Belongs to the FKBP-type PPIase family. Tig subfamily.
What are the subcellular locations of this protein?
Cytoplasm. Note=About half TF is bound to the ribosome near the polypeptide exit tunnel while the other half is free in the cytoplasm.
Protein: YLO4_SCHPO
Sequence: MFLFLPIPLNVQDIWKVNSKYKHVLLTCPVCQNKTVRVYRLVKSLALIVLPVLPVYTSKVLRCSHCGWYEPVDSAMIDQRRRREDLPTPERPEASAQQHAFFPGSSSQQTDIPNVRPQPHIPPPRKSDEAPPPYSYK
What are the official names of this protein?
UPF0768 protein C1952.04c.
What is the protein family that this protein belongs to?
Belongs to the UPF0768 family.
Protein: COFA1_MOUSE
Sequence: MTHRRTAQGRRPRWLLSIISALLSAVLQTRAATGSASQVHLDLTVLIGVPLPSSVSFTTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAIGVAVKPNSAQGGVLFAITDAFQKVIYLGLRLSSVEDGRQRVILYYTEPGSHVSREAAVFSVPVMTNRWNRFAVTVQGEEVALFMDCEEQSQVRFQRSSWPLTFEPSAGIFVGNAGAMGLERFTGSIQQLTIYSDPRTPEELCEAQESSASGEASGFQEMDEVAEIMEAVTYTQAPPKESHVDPISVPPTSSSPAEDSELSGEPVPEGTPETNLSIIGHSSPEQGSGEILNDTLEVHAMDGDPGTDDGSGDGALLNVTDGQGLSATATGEASVPVTTVLEAENGSMPTGSPTLAMFTQSIREVDTPDPENLTTTASGDGEVPTSTDGDTEADSSPTGGPTLKPREEATLGSHGEEWLTPAVSKMPLKAFEEEEASGTAIDSLDVIFTPTVVLEQVSRRPTDIQATFTPTVVLEETSGAPTDTQDALTPTVAPEQMFTAEPTDGGDLVASTEEAEEEGSGSMPPSGPPLPTPTVTPKRQVTLVGVEAEGSGPVGGLDEGSGSGDIVGNEDLLRGPPGPPGPPGSPGIPGKPGTDVFMGPPGSPGEDGAPGEPGPQGPEGQPGLDGASGQQGMKGEKGARGPNGSAGEKGDPGNRGLPGPPGKNGEVGTPGVMGPPGPPGPPGPPGPGCTTELGFEIEGSGDVRLLSKPTISGPTSPSGPKGEKGEQGAKGERGADGTSTMGPPGPRGPPGHVEVLSSSLINITNGSMNFSDIPELMGPPGPDGVPGLPGFPGPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDVPLEMMKGRKGEPGIHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVTLPGPPGLPGPPGPPGPPGAVVNIKGAVFPIPARPHCKTPVGTAHPGDPELVTFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENEDASFRGESSNNLFVSGPPGLPGYPGLVGQKGEAVVGPQGPPGIPGLPGPPGFGRPGVPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTALSDMGDMLQKAHLVIEGTFIYLRDSGEFFIRVRDGWKKLQLGELIPIPADSPPPPALSSNPYQPQPPLNPILSANYERPVLHLVALNTPVAGDIRADFQCFQQARAAGLLSTFRAFLSSHLQDLSTVVRKAERFGLPIVNLKGQVLFNNWDSIFSGDGGQFNTHIPIYSFDGRDVMTDPSWPQKVVWHGSNPHGVRLVDKYCEAWRTTDMAVTGFASPLSTGKILDQKAYSCANRLIVLCIENSFMTDTRK
What is the function of this protein?
Restin potently inhibits angiogenesis.
What are the official names of this protein?
Collagen alpha-1(XV) chain.
What is the protein family that this protein belongs to?
Belongs to the multiplexin collagen family.
What are the subcellular locations of this protein?
Secreted, extracellular space, extracellular matrix.
Protein: PUR3_YEAST
Sequence: MARIVVLISGSGSNLQALIDAQKQGQLGEDAHIVSVISSSKKAYGLTRAADNNIPTKVCSLYPYTKGIAKEDKAARAKARSQFENDLAKLVLEEKPDVIICAGWLLILGSTFLSQLQSVPILNLHPALPGCFDGTTHAIEMAWRKCQDENKPLTAGCMVHYVIEEVDKGEPLVVKKLEIIPGEETLEQYEQRVHDAEHIAIVEATYKVLQQLHK
What are the official names of this protein?
Phosphoribosylglycinamide formyltransferase, 5'-phosphoribosylglycinamide transformylase, GAR transformylase, GART.
What is the protein family that this protein belongs to?
Belongs to the GART family.
Protein: CHEA_RHIME
Sequence: MDMNEIKEIFFQECEEQLAELESGLLKLNDGDRDPETVNAVFRAVHSIKGGAGAFGLDDLVSFAHVFETTLDCVRSNRLEPNQDVLKVMLRSADVLADLTNAARDGGGVDEARSRQLIKELEALANGELPQAAAESAPKTTPAGVAPAAPVVNEEGFQPVAFSFDDFETGDEPTIEPSTYEIVFKPKSDLYSKGNDATLLLRDLSRLGEMSIHCNMDTLPPLDRMNPEEAYFSWKISLKTDKGEEAIRSVFEFAEWDCELDVALAGGTVGMDEDLPMQPVPFDLSILEDEAQAPAGEEDRAAASEGDSRNAAVAAAQTASNVLQMAQSTARVSPENARNSQSASAAQAAAQQAASAATPTIRVDLDRVDRLINLVGELVINQAMLSQSVIENDTNGTSSINMGLEELQQLTREIQDSVMAIRAQPVKPVFQRMSRIVREIADMTGKSVRLITEGENTEVDKTVIDKLAEPLTHMIRNAVDHGLETPEKRVAAGKNPEGTVRLTAKHRSGRIVIELADDGAGINREKVRQKAIDNDLIAADANLSDEEVDNLIFHAGFSTADKISDISGRGVGMDVVKRSIQALGGRINISSKPGQGSIFTMSLPLTLAVLDGMVVTVANQTLVVPLTAIVETLQPEASAIHSFGSSQRLISIRDSFCPLVDVGRILNFRGAQANPVEGVALLVESEGGGQRALMVDAIQGQRQVVIKSLEANYTHVPGIAAATILGDGRVALILDVDAIVAASRGQSLKPEMSLAAAG
What is the function of this protein?
Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors.  CheA is autophosphorylated; it can transfer its phosphate group to either CheB or CheY (By similarity).
What are the official names of this protein?
Chemotaxis protein CheA.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: CP303_DROME
Sequence: MFYTVIWIFCATLLAILFGGVRKPKRFPPGPAWYPIVGSALQVSQLRCRLGMFCKVIDVFARQYVNPYGFYGLKIGKDKVVIAYTNDAISEMMTNEDIDGRPDGIFYRLRTFNSRLGVLLTDGEMWVEQRRFILRHLKNFGFARSGMMDIVHNEATCLLQDLKDKVLKSGGKQTRIEMHDLTSVYVLNTLWCMLSGRRYEPGSPEITQLLETFFELFKNIDMVGALFSHFPLLRFIAPNFSGYNGFVESHRSLYTFMSKEIELHRLTYKNYDEPRDLMDSYLRAQDEGNDEKGMFSDQSLLAICLDMFLAGSETTNKSLGFCFMHLVLQPEIQERAFQEIKEVVGLERIPEWSRDRTKLPYCEAITLEAVRMFMLHTFGIPHRAVCDTRLSGYEIPKDTMVIACFRGMLINPVDFPDPESFNPDRYLFDGHLKLPEAFNPFGFGRHRCMGDLLGRQNLFMFTTTVLQNFKMVAIPGQVPEEVPLEGATAAVKPYDIMLVAREQ
What is the function of this protein?
May be involved in the metabolism of insect hormones and in the breakdown of synthetic insecticides.
What are the official names of this protein?
Probable cytochrome P450 303a1, CYPCCCIIIA1.
What is the protein family that this protein belongs to?
Belongs to the cytochrome P450 family.
What are the subcellular locations of this protein?
Endoplasmic reticulum membrane; Peripheral membrane protein. Microsome membrane; Peripheral membrane protein.
Protein: DGOD_ECO45
Sequence: MKITKITTYRLPPRWMFLKIETDEGVVGWGEPVIEGRARTVEAAVHELSDYLIGQDPSRINDLWQVMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGIKTLREIGFDTFKLNGCEELGLIDNSRAVDAAVNTVAQIREAFGNQIEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEEPVLAEQAEYYPKLAAQTHIPLAAGERMFSRFDFKRVLEAGGISILQPDLSHAGGITECYKIAGMAEAYDVTLAPHCPLGPIALAACLHIDFVSYNAVLQEQSMGIHYNKGAELLDFVKNKEDFSMVGGFFKPLTKPGLGVEIDEAKVIEFSKNAPDWRNPLWRHEDNSVAEW
What is the function of this protein?
Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy-D-galactonate.
What are the official names of this protein?
D-galactonate dehydratase, GalD.
What is the protein family that this protein belongs to?
Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily.
Protein: EIF3J_XENTR
Sequence: MAENDSWDADDFEPEVSNQKGAVSGPPPAGRDRWEGEDEEEDVKDNWDDEEEAEAATKQEAQKTVEPKVSEKKKLLEKIREKEKLHKKRQEEVNQQEKEGTAPELSPEEQLAEKLRLKKLQEDSDLELAKEAFGDNVTVTGIDAMNPSSREDFTEFGKLLKEKITQYERSLFYPGFLEVLVREVCVSLEVDDLKKINNSLTVLCFEKQKQEKQQSKAKKKKKGVVPGGGLKANMKNDLEDYGGMDEGYGREYDDFM
What is the function of this protein?
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.  The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
What are the official names of this protein?
Eukaryotic translation initiation factor 3 subunit J, eIF3j, Eukaryotic translation initiation factor 3 subunit 1, eIF-3-alpha, eIF3 p35.
What is the protein family that this protein belongs to?
Belongs to the eIF-3 subunit J family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: SCX38_TITCO
Sequence: MKRMILFTSCLLLIDIVVGGKEGYPADSKGCKVTCFLTAAGYCNTECKLQKASSGYCAWPACYCYGLPDSASVWDSATNKCGKK
What is the function of this protein?
This protein is not toxic.  It induces an immune response similar to that induced by whole venom.  Thus, polyclonal antibodies raised against this protein can neutralize the effects of the venom (By similarity).
What are the official names of this protein?
Toxin-like TcoNTxP1, Insect-like toxic peptide Tco 38.32-2, PT-alpha* NaTx4.5.
What is the protein family that this protein belongs to?
Belongs to the long (4 C-C) scorpion toxin superfamily. Sodium channel inhibitor family. Alpha subfamily.
What are the subcellular locations of this protein?
Secreted.
Protein: SRC1_XENLA
Sequence: MGATKSKPREGGPRSRSLDIVEGSHQPFTSLSASQTPNKSLDSHRPPAQPFGGNCDLTPFGGINFSDTITSPQRTGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLARSLSSGQTGYIPSNYVAPSDSIQAEEWYLGKITRREAERLLLSLENPRGTFLVRESETTKGAYCLSVSDYDANRGLNVKHYKIRKLDSGGFYITSRTQFISLQQLVAYYSKHADGLCHRLTTVCPTAKPQTQGLSRDAWEIPRDSLRLELKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYISKGSLLDFLKGEMGRYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPDCPESLHDLMFQCWRKDPEERPTFEYLQAFLEDYFTATEPQYQPGDNL
What are the official names of this protein?
Tyrosine-protein kinase Src-1, p60-Src-1.
What is the protein family that this protein belongs to?
Belongs to the protein kinase superfamily. Tyr protein kinase family. SRC subfamily.
What are the subcellular locations of this protein?
Cell membrane.
Protein: GPDA1_LACDA
Sequence: MTKISALGAGSWGSVLASMLADNGHEVALYAHRQVIADEINQDHTNLHYMKDWTLNPSVWASTDMGQVLKDCDVILFAVPTSAIRSVAKAVRQVLDENGRQPYLVSATKGIESGTKKLVLQIFKDEIYPDGFDKMIVLSGPSHAENTAQKDLTAITLASTSLDNAAKMQKIFSNDYVRFYTSNDPIGVQVGGAVKNVIAIAAGILAGLGYGDNAKAALMTRGLAEITRLGVAFGGQPWTFSGLSGIGDLIVTCTSVNSRNWRCGYQLGQGKPLDEVLANMGQVVEGATTVKAVYEICDKYSLDMPISASIYKVLYEGAKIDDEIKLMMSRQLGPEIRI
What are the official names of this protein?
Glycerol-3-phosphate dehydrogenase [NAD(P)+] 1, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1.
What is the protein family that this protein belongs to?
Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: METK2_PETHY
Sequence: METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTSMVMVFGEITTKATVDYEKIVRDTCRGIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYRNDNGAMIPLRVHTILISTQHDETVTNDQIAQDLKEHVIKPVVPAEYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPGKDVLTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVLNPQA
What is the function of this protein?
Catalyzes the formation of S-adenosylmethionine from methionine and ATP.  The reaction comprises two steps that are both catalyzed by the same enzyme: formation of S-adenosylmethionine (AdoMet) and triphosphate, and subsequent hydrolysis of the triphosphate.
What are the official names of this protein?
S-adenosylmethionine synthase 2, AdoMet synthase 2, Methionine adenosyltransferase 2, MAT 2.
What is the protein family that this protein belongs to?
Belongs to the AdoMet synthase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: NUOB_ACIBT
Sequence: MKYTLTRANPDADQYPLQDRQIVTDPLEEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERRPLSAVIGDDLQPVYKPKMMPERDRKNAQRIAVKNLRSMDEIK
What is the function of this protein?
NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.  The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone.  Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
What are the official names of this protein?
NADH-quinone oxidoreductase subunit B, NADH dehydrogenase I subunit B, NDH-1 subunit B.
What is the protein family that this protein belongs to?
Belongs to the complex I 20 kDa subunit family.
What are the subcellular locations of this protein?
Cell inner membrane; Peripheral membrane protein; Cytoplasmic side.
Protein: RPOZ_ECOLI
Sequence: MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR
What is the function of this protein?
Part of the processive rRNA transcription and antitermination complex (rrnTAC).  The complex forms an RNA-chaperone ring around the RNA exit tunnel of RNAP.  It supports rapid transcription and antitermination of rRNA operons, cotranscriptional rRNA folding, and annealing of distal rRNA regions to allow correct ribosome biogenesis.
What are the official names of this protein?
DNA-directed RNA polymerase subunit omega, RNAP omega subunit, RNA polymerase omega subunit, Transcriptase subunit omega.
What is the protein family that this protein belongs to?
Belongs to the RNA polymerase subunit omega family.
Protein: RL16_ECO81
Sequence: MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM
What is the function of this protein?
Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.
What are the official names of this protein?
50S ribosomal protein L16.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL16 family.
Protein: SYY_BUCAP
Sequence: MDLINELHQRNLIFHITNENKLKELIKNKYISLYCGFDPTEDSLHVGHLLPLITLKRFQVLGHKPIVLIGGATSLIGDPSFKTKERLLKSDSFVEKCTLKISQQISFFLDFNSNFNSAIILNNNLWFKKINILQFLRDVGKYFSVNALINREAVKKRIKRSDQGISFTEFSYNLLQAYDFFILNQKNQVSLQIGGSDQWGNISSGMHLIHRISKKEAYGLTLPLLMQSNGIKFGKTESGTVWLDPQKTTPYRFYQFWMNIEDSNVYRFLKLFTFIDIHEINEREKNSYKKNQIVSDKVLLAKHMTRLVHGDEKLSAAERITNILFFKNINDIQISDLEQLRKDGVPVVETYKIKDLQEALVLSSLAQSRTQAKNMIISNSISINTKKIVNKNYIIDDNDKLFNQFTLLSRGKKNHCLIYWNK
What is the function of this protein?
Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).
What are the official names of this protein?
Tyrosine--tRNA ligase, Tyrosyl-tRNA synthetase, TyrRS.
What is the protein family that this protein belongs to?
Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RR7_HYDMC
Sequence: MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLAASRKRPGRNMAFKLSSELMDAAKGSGDAIRKKEETHRMAEANRAFAHFR
What is the function of this protein?
One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit.
What are the official names of this protein?
30S ribosomal protein S7, chloroplastic.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS7 family.
What are the subcellular locations of this protein?
Plastid, chloroplast.
Protein: RS12_BUCCC
Sequence: MSTINQLVRFSRVRKVTKSNVPALSKCPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGHEVTAYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHVIRGALDCSGVKDRKKGRSKYGVKKLKV
What is the function of this protein?
Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone.  Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together.  The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
What are the official names of this protein?
30S ribosomal protein S12.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uS12 family.
Protein: SYA_COXBU
Sequence: MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRAVSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLPPQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGPTISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGVHDNYDIDLFQYLLKALRTLLKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYVLRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSNTLTKGLKILDHEMAGLPSRQIPGNLIFQLYDTYGFPPDLTADIARERDFVMDYAGFDKAMERQREQSQQAHQFVANYAQKASIGGETQFVGYETLNSQANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGSFRVKDTKKQGDIYLHIGEMLQGHLNVKDKVRAEVDVSRFDIMRNHSATHLLHEALRRVLGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAKKKGALALFGERYGKEVRVLEMGDFSTEICGGTHTERTGEIGLFKIVSESGCAAGIRRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQRLASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATIEEGRIQLVAGVTKNCLEHFNATELLAPIAEKVGGRSGGRPDLAQGAGERPENLEAALAAVPKWIEKKLKE
What is the function of this protein?
Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala).  Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
What are the official names of this protein?
Alanine--tRNA ligase, Alanyl-tRNA synthetase, AlaRS.
What is the protein family that this protein belongs to?
Belongs to the class-II aminoacyl-tRNA synthetase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: SOT7_ARATH
Sequence: MDETKIPKKLQSDDEENISLISSLPFDVDFDSTKLFKYQGCWYDDKTLQGVLNFQRGFEPQDTDIIIASFPKSGTTWLKALTVALLERSKQKHSSDDHPLLLDNPHGLVPFLELRLFTETSKPDLTSISSSPRLFSTHVAFQTLREALKNSPCKIVYVWRNVKDVLVSFWYFNSAKLKIEEERSILDSMFESFCRGVINYGPSWEHVLNYWRASLEDSKNVLFLKYEELKTEPRVQLKRLAEFLDCPFTVEEEERGSVEEILDLCSLRNLKNLEINKTGKTLRGADHKIFFRKGEVGDSKNHLTPEMEKIIDMITEEKFEGSDLKF
What is the function of this protein?
Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.
What are the official names of this protein?
Cytosolic sulfotransferase 7, AtSOT7.
What is the protein family that this protein belongs to?
Belongs to the sulfotransferase 1 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: YK065_YEAST
Sequence: MRSNILKLLQRTSRRYVSSKDFEPVIGSNPKKQTSRLMVGSVGVMIPVLLYLFYKNDSKHSEIKKIYQNEKKI
What are the official names of this protein?
Uncharacterized protein YKL065W-A.
What are the subcellular locations of this protein?
Endoplasmic reticulum. Membrane; Single-pass membrane protein.
Protein: RNJ2_STAAW
Sequence: MSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTIALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
What is the function of this protein?
An RNase that has 5'-3' exonuclease and possibly endoonuclease activity.  Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity).
What are the official names of this protein?
Ribonuclease J 2, RNase J2.
What is the protein family that this protein belongs to?
Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily.
What are the subcellular locations of this protein?
Cytoplasm.