PharMolix/UniProtQA huggingface dataset:
Protein: QUEF_VIBC1
Sequence: MSKYSDAKELAGLTLGKKTEYANQYDASLLQPVPRSLNRDDLELGDSLPFLGHDIWTLYELSWLNSKGLPQVAVGEVYIPATSANLIESKSFKLYLNSYNQTRFATWEEVTERLTQDLSACAGEAVLVEVNPVNHYTNQPIVTMEGECIDDQDIEITSYDFNAALLEGAAGDEQVEEILHSHLLKSNCLITNQPDWGSVEIRYQGAKLDREKLLRYLVSFREHNEFHEQCVERIFTDLMKYCQPTKLTVFARYTRRGGLDINPYRSTEQDKPAHNNRMARQ
What is the function of this protein?
Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
What are the official names of this protein?
NADPH-dependent 7-cyano-7-deazaguanine reductase, 7-cyano-7-carbaguanine reductase, NADPH-dependent nitrile oxidoreductase, PreQ(0) reductase.
What is the protein family that this protein belongs to?
Belongs to the GTP cyclohydrolase I family. QueF type 2 subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: DOHH_YEAST
Sequence: MSTNFEKHFQENVDECTLEQLRDILVNKSGKTVLANRFRALFNLKTVAEEFATKPEEAKKAIEYIAESFVNDKSELLKHEVAYVLGQTKNLDAAPTLRHVMLDQNQEPMVRHEAAEALGALGDKDSLDDLNKAAKEDPHVAVRETCELAINRINWTHGGAKDKENLQQSLYSSIDPAPPLPLEKDATIPELQALLNDPKQPLFQRYRAMFRLRDIGTDEAILALATGFSAESSLFKHEIAYVFGQIGSPAAVPSLIEVLGRKEEAPMVRHEAAEALGAIASPEVVDVLKSYLNDEVDVVRESCIVALDMYDYENSNELEYAPTAN
What is the function of this protein?
Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.
What are the official names of this protein?
Deoxyhypusine hydroxylase, DOHH, Deoxyhypusine dioxygenase, Deoxyhypusine monooxygenase, Ligand of eIF5A protein 1.
What is the protein family that this protein belongs to?
Belongs to the deoxyhypusine hydroxylase family.
What are the subcellular locations of this protein?
Cytoplasm. Nucleus.
Protein: MFF_BOVIN
Sequence: MAEISRIQYEMEYTEGISQRMRVPEKLKVAPPNADLEQGFQEGVSNASVIMQVPERIVVAGNNEDIPFSRPADLDLIQSTPFKPLALKTPPRVLTLSERPLDFLDLERPAPTPQNEEIRAVGRLKRERSMSENAVRQNGQLVKTDSMYGISNIDAMIEGTSEDMTVVDAASLRRQIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
What is the function of this protein?
Plays a role in mitochondrial and peroxisomal fission.  Promotes the recruitment and association of the fission mediator dynamin-related protein 1 (DNM1L) to the mitochondrial surface.  May be involved in regulation of synaptic vesicle membrane dynamics by recruitment of DNM1L to clathrin-containing vesicles.
What are the official names of this protein?
Mitochondrial fission factor.
What is the protein family that this protein belongs to?
Belongs to the Tango11 family.
What are the subcellular locations of this protein?
Mitochondrion outer membrane; Single-pass type IV membrane protein. Peroxisome. Cytoplasmic vesicle, secretory vesicle, synaptic vesicle.
Protein: EFG_RHIE6
Sequence: MAREYKIEDYRNFGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWKGRDGKMRRFNIIDTPGHVDFTIEVERSLRVLDGAIALLDANAGVEPQTETVWRQAEKYNVPRMIFCNKMDKTGADFYRSVEMIKTRLGATAVVMQLPIGAESDFKGVIDLVEMNALIWRDESLGAQWDVVEIPEDLKAKAEEYREKLIETVVEIDEAAMEAYLEGNMPDNDKIRELVRRGTIDVKFHPMFCGTAFKNKGVQPLLDAVVDYLPSPLDIPAIKGIDFKTEADIERHADDAEPLSMLAFKIMNDPFVGSLTFARIYSGKLEKGSSVLNTVKDKRERVGRMLQMHSNSREDIEEAFAGDIVALAGLKETTTGDTLCDPLKPVILERMEFPEPVIQIAIEPKSKGDQEKMGLALNRLAAEDPSFRVKTDQESGQTIIAGMGELHLDIIVDRMRREFKVEANVGAPQVAYRETITRQTEEDYTHKKQTGGTGQFARVKIIFEPNPEGEDFKFESKIVGGSVPKEYIPGVQKGIESVLSSGPLAGFPMLGVKATLIDGAFHDVDSSVLAFEIASRACFREAAKKAGAQLLEPMMKVEVVTPEDYVGDVIGDLNSRRGQIQGQETRGIAVVISANVPLANMFKYVDNLRSMSQGRAQYTMTFDHYAPVPSNVATEIQAKYSGQK
What is the function of this protein?
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation.  During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively.  Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.
What are the official names of this protein?
Elongation factor G, EF-G.
What is the protein family that this protein belongs to?
Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: Y4104_STRCO
Sequence: MSTEPAPLLALDLTGTFAFGLNGALTAVRAARLDVVGVVVLGMITALGGGVIRDVLIDSLPPAAFLDWRYYTLAAAGGLLAFAVSRHLRRLEPAITVLDAVGLSTFAVIGASKALDAGLAVVPAMLLGVITAVGGGTIRDTLVGRIPTVLRTGLYAIPALAGAAVTVATTETGVYGLPAALGAAAVCFLIRMLGLHFGINAPEPPETRPSGGGTRRQK
What are the official names of this protein?
UPF0126 membrane protein SCO4104.
What is the protein family that this protein belongs to?
Belongs to the UPF0126 family.
What are the subcellular locations of this protein?
Cell membrane; Multi-pass membrane protein.
Protein: PLAS_RUMOB
Sequence: IEIKLGGDDGALAFVPGSFTVAAGEKIVFKNNAGFPHNIVFDEDEVPAGVDASKISMSEEDLLNAPGETYAVTLSEKGTYSFYCSPHQGAGMVGKVTVQ
What is the function of this protein?
Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
What are the official names of this protein?
Plastocyanin.
What is the protein family that this protein belongs to?
Belongs to the plastocyanin family.
Protein: RSMG_NITSB
Sequence: MSTEEKLNIFTQKLLEWNKIHNLTGSKSEEEVQENIEDALFALQFLPDTIQNALDIGTGAGFPGLVLAIAMPKTQWILTEPRQKRASFLHYMKSILNLSNVIVYKKRVEQIEAVPMDLITSRAVMKTKDLIDLSKKFITPSTTLLFYKGENLGDELKGMEHYSIFERGKRKYLLLKGDDVI
What is the function of this protein?
Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
What are the official names of this protein?
Ribosomal RNA small subunit methyltransferase G, 16S rRNA 7-methylguanosine methyltransferase, 16S rRNA m7G methyltransferase.
What is the protein family that this protein belongs to?
Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: AROA_CLOD6
Sequence: MGSLKIYPSKLSGDVKIPPSKSMAHRAVICSSLSNGKSRISNIDFSDDIIATIRAMTSLGAIIEKKEDILEISGIFSKEGILNRENQLNQPKLTIDCNESGSTLRFLVPISLAFDGVKRFIGRGNLGKRPLDTYYEIFDRQNIKYSYKENQLDLIISGKLKPDEFRVKGNISSQFITGLLFILPTLESDSKIIITTELESKGYLDLTLSTIKDFGVEIINNNYKEFIIKGNQTYKARDYKVEGDYSQGAFYLSADAIGEDISILDLKEDSLQGDSEVVEILSRMGMEILREGNKIKGITNGLNGTLIDASQCPDIIPVLSVVASLSIGKTTIINAGRLRIKECDRLHAINVELSKLGANIEEKEDSLIIEGVSKLNGGVEVWSHKDHRIAMTLAIASCRCDKPIILKDFECVSKSYPHFFKDFKMLGGRIDEWNMGK
What is the function of this protein?
Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
What are the official names of this protein?
3-phosphoshikimate 1-carboxyvinyltransferase, 5-enolpyruvylshikimate-3-phosphate synthase, EPSP synthase, EPSPS.
What is the protein family that this protein belongs to?
Belongs to the EPSP synthase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: NQRA_CHLT2
Sequence: MKIVVSRGLDLSLKGAPKESGFCGKVDPTYVSVDLRPFAPLPLEVKVTPGDQVTAGSPLAEYKLFSGVFITSPVDGEVVEIRRGNKRALLEIVIKKKPGISQTKFSYDLQSLTQKDLLEVFKKEGLFALFKQRPFDIPALPTQSPRDVFINLADNRPFTPSVEKHLSLFSSKEDGYYIFVVGVQAIAKLFGLKPHIISTDRLTLPTQDLVSIAHLHTIDGPFPSGSPSTHIHHIARIRNERDVVFTISFQEVLSIGHLFLKGFVLGQQIVALAGSALPPSQRKYLITAKGASFSDLLPKDIFSSDEITLISGDPLTGRLCKKEENPCLGMRDHTITLLPNPKTRESFSFLRLGWNKLTVTRTYLSGFFKRKRVFMDMDTNMHGEKRPIIDAEIYERVSAIPVPVALIIKALETQNFEEACRLGLLEVAPEDFALPTFIDPSKTEMFSIVKESLLRYAKENVVTSS
What is the function of this protein?
NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm.  NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.
What are the official names of this protein?
Na(+)-translocating NADH-quinone reductase subunit A, Na(+)-NQR subunit A, Na(+)-translocating NQR subunit A, NQR complex subunit A, NQR-1 subunit A.
What is the protein family that this protein belongs to?
Belongs to the NqrA family.
Protein: DNAA_SHIB3
Sequence: MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDILLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS
What is the function of this protein?
Plays an important role in the initiation and regulation of chromosomal replication.  Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'.  DnaA binds to ATP and to acidic phospholipids.
What are the official names of this protein?
Chromosomal replication initiator protein DnaA.
What is the protein family that this protein belongs to?
Belongs to the DnaA family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: MJK1_METJA
Sequence: METYEKIELGIIVIILLILIESVILMTVEGWDFFTAFYTAVVTISTVGYGDYTPQTFLGKLSVIIYIFAGVGAVAYTMGNIASFFIEGHFRKYFRLRKMMDRIKKLNNHYIICGYGRLGKVIAEEFKKCNIPFVIIDSDEKLLEEALEKDPNLICIVGDATSDDILKKAKIEKAKGLISVVSSDAENVFITLSAKKLNPNIYIVAKAEKPSTLDKLIKAGADRAVCPYIVGGMEIARIAINPDIVEFIHSLVATEEDMEVRRYIVKNKELDNKLLKDSGIREKTGATILAVKKGDKTITSPPPDTVINIGDIIYAFGTKEQLEKLKRYVEGVE
What is the function of this protein?
Potassium channel protein.  Seems to conduct potassium at low membrane potentials.
What are the official names of this protein?
Potassium channel protein 1, MjK1.
What are the subcellular locations of this protein?
Cell membrane; Multi-pass membrane protein.
Protein: OPR3_ORYSJ
Sequence: MVQAQAAAKEAAAAAIPLMAPYKMGRFELSHRVVLAPLTRCRSYDHVPQPHAALYYSQRATNGGLLISEATGVSATGEGYPEIPGVWTRQQVKAWKPIVDAVHRKGALFFCQLAHVGRASTNDQQPNGQAPISSTDKQITPDDSHTVYSKPRRLRTDEIPHVVDDFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDSANGRTDQYGGSLENRCRFAVEVIDAVVAEVGADRVGIRLSPYIDFMDCFDSNPEALGSYMVRQLNKHPELLYCHMVEPRMATVEGRRKINHGLLPFRKQFNGTFIASGGYDREEGNKVVDDGYADLVAYGRLFLANPDLPRRFELNAPLNKYDGSTFYTHDPVVGYTDYPFLEEKKEDSATVIV
What is the function of this protein?
Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules.
What are the official names of this protein?
Putative 12-oxophytodienoate reductase 3, OPDA-reductase 3, OsOPR3.
What is the protein family that this protein belongs to?
Belongs to the NADH:flavin oxidoreductase/NADH oxidase family.
Protein: RL16_ANAPZ
Sequence: MLFVPRKTKHSKSFKGRISGNTKGGSELAFGQCGLKALEPCRLTSKQIESARRSISRSLRRVGKVWIRVFCHVPVSKKPVDVRMGKGKGSTEMWVCKVQPGRILFEIGGVSVELAREAFRKAQSKLPIKCSFVEEGF
What is the function of this protein?
Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.
What are the official names of this protein?
50S ribosomal protein L16.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL16 family.
Protein: GREM1_MOUSE
Sequence: MNRTAYTVGALLLLLGTLLPTAEGKKKGSQGAIPPPDKAQHNDSEQTQSPPQPGSRTRGRGQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCISIDLD
What is the function of this protein?
Cytokine that may play an important role during carcinogenesis and metanephric kidney organogenesis, as BMP a antagonist required for early limb outgrowth and patterning in maintaining the FGF4-SHH feedback loop (PubMed:12808456, PubMed:15201225).  Down-regulates the BMP4 signaling in a dose-dependent manner (PubMed:15133038).  Antagonist of BMP2; inhibits BMP2-mediated differentiation of osteoblasts (in vitro) (By similarity).  Acts as inhibitor of monocyte chemotaxis (By similarity).
What are the official names of this protein?
Gremlin-1, Cysteine knot superfamily 1, BMP antagonist 1, Down-regulated in Mos-transformed cells protein.
What is the protein family that this protein belongs to?
Belongs to the DAN family.
What are the subcellular locations of this protein?
Secreted.
Protein: TDH_LEGPC
Sequence: MKSLVKAKKEPGIWMQDVPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRPGCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGEDVLITGAGPIGIMAAAIVRHIGARHVVITDVNDHRLELARQMGVSRAVNVKYQKLSDVANELGMLEGFDVGLEMSGNPMALNDMMKAMNHGGHVALLGIPPQETPIDWNQVIFKGLVIKGIYGREMFETWYKMIAMLQSGLNISPVITHNFPVDEYQHAFQIMASGQSGKVILNW
What is the function of this protein?
Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate.
What are the official names of this protein?
L-threonine 3-dehydrogenase, TDH.
What is the protein family that this protein belongs to?
Belongs to the zinc-containing alcohol dehydrogenase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: LON_MYCSM
Sequence: MAEAKTVPVLFLNDSIVLPGMVVPIELDDAARAAVDAARASESGELLIAPRLEDRYPAYGVLASIVQIGRLPNGDAAAVVRGERRAHIGSGTSGPGAALWVQVEEVTDPEPTDETKKLAGEYKKLLLAMLQRRDAWQIVDMVNKITDPSALADTAGYASYLTGTQKRELLETTDVDRRLSLLIGWTGDHLAETEVNDKIAEDVRTGMEKQQKEFLLRQQLAAIRKELGELDDNGDGSSDDYRARIEQADLPEKVREAALREVGKLERASDQSPEGGWIRTWLDTVLDLPWNVRTEDSTDLARAREILDTDHHGLSDVKDRIVEYLAVRGAAPQRGMAVVGGRGSGAVMVLAGPPGVGKTSLGESVARALDRKFVRVALGGVRDEAEIRGHRRTYVGALPGRIVRAIGEAGSMNPVVLLDEIDKVGSDYRGDPAAALLEVLDPAQNHTFRDHYLDLDLDLSDVVFLVTANVIENIPSALLDRMELVEIDGYTADDKLAIAQGFLLPRQRERGGLTSDEVTVTEAALRKIAADYTREPGVRQFERLLAKAMRKAATKLADHPQAAPITIDEPDLVEYLGRPRFLPESAERTAVPGVATGLAVTGLGGDVLYIEANSTEGEPGLQLTGQLGDVMKESAQIAMSYVRAHAKQLGVDPEALNRRIHIHVPAGAVPKDGPSAGVTMVTALVSMATGRKVRGDVGMTGEVTLNGRVLPIGGVKQKLLAAQRAGLSTVFIPQRNQPDLDDVPADVLDALDVRPMTDVADIIAAALEPAHEASTAAAA
What is the function of this protein?
ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins.  Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress.  Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long.  Binds to DNA in a double-stranded, site-specific manner.
What are the official names of this protein?
Lon protease, ATP-dependent protease La.
What is the protein family that this protein belongs to?
Belongs to the peptidase S16 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: DHX16_PIG
Sequence: MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLSGPARDFALKLWNKVPRKAVAEKPARAAEREARALLEKNRSYRLLEDSEESSEEAVGRAGSSLQKKRKKRKHLRKKRQEEEEEEEEEEVPEKGKKTTGGNKPQTEKPESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNRYHMPEETRGQPTRAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPAAPPAPTQAQQKESIQAVRRSLPVFPFREELLAAVANHQILIIEGETGSGKTTQIPQYLFEEGYTQKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKTGKTREELG
What is the function of this protein?
Required for pre-mRNA splicing as component of the spliceosome.  Contributes to pre-mRNA splicing after spliceosome formation and prior to the first transesterification reaction.  As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs.  Plays also a role in innate antiviral response by acting as a pattern recognition receptor sensing splicing signals in viral RNA.  Mechanistically, TRIM6 promotes the interaction between unanchored 'Lys-48'-polyubiquitin chains and DHX16, leading to DHX16 interaction with RIGI and ssRNA to amplify RIGI-dependent innate antiviral immune responses.
What are the official names of this protein?
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, DEAH-box protein 16.
What is the protein family that this protein belongs to?
Belongs to the DEAD box helicase family. DEAH subfamily. DDX16/PRP8 sub-subfamily.
What are the subcellular locations of this protein?
Nucleus. Nucleus, nucleoplasm.
Protein: RPOE_STRP2
Sequence: MELEVFAGQEKSELSMIEVARAILELRGRDHEMHFSDLVNEIQNYLGTSNSDIREALPLFYTELNFDGSFISLGDNKWGLRSWYGVDEIDEEIIALEENDDDEVAPKAKKKRVNAFMDGDSDAIDYNADDPEDEDAYEADPALSYDDENPDDEKNEVEAYDAEINEIAPDDLGEDVDLNEDDDEFSDDDAETSEE
What is the function of this protein?
Participates in both the initiation and recycling phases of transcription.  In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling.
What are the official names of this protein?
Probable DNA-directed RNA polymerase subunit delta, RNAP delta factor.
What is the protein family that this protein belongs to?
Belongs to the RpoE family.
Protein: PLSX_PSESM
Sequence: MSAPIIAIDAMGGDFGPRNIVQASLACLTATPSLHLALVGQASLIEELIASHAAVDRSRLRVVNATESIAMDERPSQALRGKSDSSMRVALELVSSGQAQACVSAGNTGALMALSRYVLKTLPGIDRPAMIAAIPTRTGHCQLLDLGANVDCSAEALYQFAVMGSVLAETLGVTKPRVALLNVGTEDIKGNQQVKLAAGLLQAAAGLNYIGYVEGDGVYRGEADVVVCDGFVGNVLLKSSEGLATMIAARIDALFNRNLLSRAVGALALPLLRRLQIDLAPARHNGASLLGLQGVVVKSHGSASVSGFQSAIQRAIVESREDLPQRLKGRLEVMFADGRT
What is the function of this protein?
Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP).  This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
What are the official names of this protein?
Phosphate acyltransferase, Acyl-ACP phosphotransacylase, Acyl-[acyl-carrier-protein]--phosphate acyltransferase, Phosphate-acyl-ACP acyltransferase.
What is the protein family that this protein belongs to?
Belongs to the PlsX family.
What are the subcellular locations of this protein?
Cytoplasm. Note=Associated with the membrane possibly through PlsY.
Protein: HSLU_BORPD
Sequence: MSASTMTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVEEPLRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQAEDAAEDRILDALVPPSRGTSGEPERGEDSNARQTFRKRLREGKCDDLEIEIEIAQPVPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKPKKMKVKEAFKLIVEEEAAKRINEDDLRTAAIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHILFIASGAFHLSRPSDLIPELQGRFPIRVELESLTAQDFVRILSDTDASLIKQYSALLGTEDVQLDFKPDGIERLAELAFSVNERTENIGARRLYTVMEKLLEELSFDATASSGKTITIDAAYVDAQLSEAASSQDLARYVL
What is the function of this protein?
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.  The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV.  HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
What are the official names of this protein?
ATP-dependent protease ATPase subunit HslU, Unfoldase HslU.
What is the protein family that this protein belongs to?
Belongs to the ClpX chaperone family. HslU subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: HDA6_ARATH
Sequence: MEADESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPLNDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETRPKPRIWSGTATYESDSDDDDKPLHGYSCRGGATTDRDSTGEDEMDDDNPEPDVNPPSS
What is the function of this protein?
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4).  Might remove acetyl residues only from specific targets, such as rDNA repeats or complex transgenes.  Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.  Histone deacetylases act via the formation of large multiprotein complexes.  Required for rRNA gene silencing in nucleolar dominance.  Plays a role in transgene silencing, but this effect seems to bee independent of the histone deacetylase activity (PubMed:11340181, PubMed:12486004, PubMed:15037732, PubMed:16648464).  Part of the AS1 repressor complex to regulate the KNOX expression in leaf development (PubMed:23271976).  Binds to KNAT1, KNAT2, and KNATM chromatin (PubMed:23271976).  Involved in the regulation of flowering time (PubMed:21398257, PubMed:25922987).  Forms a histone deacetylase complex with HDA5, FLD and MSI4/FVE that represses FLC gene expression to control flowering time (PubMed:21398257, PubMed:25922987).
What are the official names of this protein?
Histone deacetylase 6, AtHDA6.
What is the protein family that this protein belongs to?
Belongs to the histone deacetylase family. HD type 1 subfamily.
What are the subcellular locations of this protein?
Nucleus, nucleolus. Nucleus.
Protein: RPE_PONAB
Sequence: MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYAFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
What is the function of this protein?
Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
What are the official names of this protein?
Ribulose-phosphate 3-epimerase, Ribulose-5-phosphate-3-epimerase.
What is the protein family that this protein belongs to?
Belongs to the ribulose-phosphate 3-epimerase family.
Protein: TOLB_PHOLL
Sequence: MRQAFKVVLSILMLWVTVAHAEVRIEITQGVDSARPIGVVPFKWTGAGNAPEEIGAIVGADLRNSGKFNPIDISRMPQQPTTTSEVTPAAWSALGIDAVVVGQIQPSADGGFLISYQLVDTASAPGTVLAQDQFKVTKQWLRYAAHTASDQVFEKLTGIKGAFRTRLAYIVKTNGGKYPYELRVSDYDGYNQFTVHRSPEPLMSPAWSPDGAKLAYVTFESGRSALVIQTLASGEVRQVASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMDLGSAQIRQITDGRSNNTEPSWMPDNQTLVYTSDQGGRPQLYKTDINGGAPQRLTWEGTQNQDADVSADGNFVMMVSSESGKQHIAKQDLATGAVQILTDTFLDETPSIAPNGTMVIYSSTQGLGTVLQLVSTDGRFKARLPATDGQVKFPAWSPYL
What is the function of this protein?
Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.  TolB occupies a key intermediary position in the Tol-Pal system because it communicates directly with both membrane-embedded components, Pal in the outer membrane and TolA in the inner membrane.
What are the official names of this protein?
Tol-Pal system protein TolB.
What is the protein family that this protein belongs to?
Belongs to the TolB family.
What are the subcellular locations of this protein?
Periplasm.
Protein: ASTB_BURPS
Sequence: MNAKEANFDGLVGPTHNYAGLSFGNVASLSNEKSDANPKAAAKQGLRKMKQLADLGFAQGVLPPQERPSLRLLRELGFSGKDADVIAKAARQAPELLAAASSASAMWTANAATVSPSADTSDARVHFTPANLCSKLHRAIEHESTRRTLAAIFADEARFAVHDALPGTPALGDEGAANHTRFCAEYGAPGVEFFVYGRAEYRRGPEPTRFPARQTFEASRAVAHRHGLREEATIYAQQRPDVIDAGVFHNDVIAVGNRDTLFCHEHAFVDRQAVYDALAASLGALGAQLNVIEVPDRAVSVADAVGSYLFNSQLLAREDGTQMLVVPQECRENANVAAYLDALVAGNGPIRDVRVFDLRESMKNGGGPACLRLRVVLNDAERAAVKPNVWIGDALFASLDAWIDKHYRDRLSPVDLADPALLDESRTALDELTQILGLGSLYDFQR
What is the function of this protein?
Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)-succinylornithine, ammonia and CO(2).
What are the official names of this protein?
N-succinylarginine dihydrolase.
What is the protein family that this protein belongs to?
Belongs to the succinylarginine dihydrolase family.
Protein: C518B_DICDI
Sequence: MLTNIIILIILYLFYDFCYKNFKYRNYGSPWALPVIGHFIHVINQPHLVVHNDRMKYNNGRFVNYWFGDYLSIAITDPILYKKIYLNFPKQINSRLKSPTVLNISERFRGIISSNENNWDFHHGILSKLFNGHKAKINNFLFEKETKFIIEYMKKISKSGENFDTRSNFLYFYSNILFDYILGKRVENIYENELRKDRKKFMVSIQEVMDSVGLIKFLNYLILSYPFLSIYLRYFTYTTFNLKKILKQYYDEHLETIDLNKPRDVLDNLIMEYKNQNAIECDKSFVAIAIELLAAGTDTNSSTSEWFLTYLVNNPIYQDKIYDELIGALKINKPLKGSDVLINLSHRPLTPLFNATLKEVLRLIPATPFSVPRMSNEGFEVDGIKIPKGTYLFPSMYSIFRDEKYWGENANKFYPERFLTDSHSNNYFPYGVGKRMCLGSNFSQHELYICLTNIVLNFKIKSIDGKPLNEIPNYGITFRPNIFEVKLENR
What are the official names of this protein?
Probable cytochrome P450 518B1.
What is the protein family that this protein belongs to?
Belongs to the cytochrome P450 family.
What are the subcellular locations of this protein?
Membrane; Single-pass membrane protein.