PharMolix/UniProtQA huggingface dataset:
Protein: RADA_AQUAE
Sequence: MGKNKTAYVCQECGYKSVKWLGKCPSCGEWNTLVEEFEPQSFSLVKKEPSLVLPVTDWEKEEHERETTGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQISDRVANGKKVLYVSGEESGTQIALRAKRLGINNENLLVYPEVNLEKILQTLEKEKPSLLVLDSVQTIFSERLESSAGSVSQVREVTYRITEFCKEKNVPAFIVGQITKEGSIAGPKVLEHIVDTVLQFEGERFNFYRIVKVIKNRFGSTGEIAVFKMTDKGLEEVPEPSAFFISEKANAPGSVVFPHTEGSKPVLLEVQALVIPALYTTPQRRTQGFDPNRLALILAVLEKEAKIFTRDQDVFVNVAGGMSVKEPAADLAVAMAVVSSKKEKEVPKDFVIFGEVGLSGEIRAVHFGDLRLKEAKRFGFKKALIPKSLEIEIDGMEIYPVSHIQEAIEVLF
What is the function of this protein?
DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks.  Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster.  Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB.  Does not have RecA's homology-searching function.
What are the official names of this protein?
DNA repair protein RadA, Branch migration protein RadA.
What is the protein family that this protein belongs to?
Belongs to the RecA family. RadA subfamily.
Protein: Y2014_STAAR
Sequence: MTNGYIGSYTKKNGKGIYRFELNENQSRIDLLETGFELEASTYLVRNNEVLYGINKEGEQCGVASLKIDDNGELHLLNKCLSSKAGTGCYVSISEDKRYLFEAVYGAGIIRMYELNTHTGEIIRLIQELAHDFPTGTHERQDHPHAHYINQTPDGKYVAVTDLGADRIVTYKFDDNGFEFYKESLFKDSDGTRHIEFHDNGKFAYVVHELSNTVSVAEYNDGKFEELERHLTIPENFDGDTKLAAVRLSHDQQFLYVSNRGHDSIAIFKVLDNGQHLELVTITESGGQFPRDFNIASSDDLLVCAHEQGDSVVTVFERNKETGKITLCDNTRVASEGVCVIF
What are the official names of this protein?
Uncharacterized protein SAR2014.
What is the protein family that this protein belongs to?
Belongs to the cycloisomerase 2 family.
Protein: CYB_PANTI
Sequence: MTNIRKSHPLIKIINHSFIDLPAPSNISAWWNFGSLLGVCLILQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLYMHVGRGMYYGSYTFSETWNIGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFTLPFIVSALAAVHLLFLHETGSNNPSGMVSDSDKIPFHPYYTIKDILGLLVLVLTLMLLVLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAIIPALHTSKQRGMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIAIGQLASILYFFILLVLMPISGIIENRLLKW
What is the function of this protein?
Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain.  The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c.  Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis.
What are the official names of this protein?
Cytochrome b, Complex III subunit 3, Complex III subunit III, Cytochrome b-c1 complex subunit 3, Ubiquinol-cytochrome-c reductase complex cytochrome b subunit.
What is the protein family that this protein belongs to?
Belongs to the cytochrome b family.
What are the subcellular locations of this protein?
Mitochondrion inner membrane; Multi-pass membrane protein.
Protein: A22_LOXIN
Sequence: MLLRIALILGCWSILSEGAENDIAEREDRKRPIWNMAHMVNAISQIHEFGALGANSIETDVSFDKNAKPEYTFHGIPCDCFRNCMNWEYFNHFLEGLRNATTPGNPKYRDRMILVVFDLKSNGLYYDAQARDAGKNLALSLLQNYWNNGDNGGRAYIVLSVPLLKHYELFQGFRETLKEQGHEELLEKVGYDFSGNDDISDIEEAYRLAGISEHIWQSDGITNCIYRGFDRVIQAVNAREKFEGIIKKVYFWTADKPSTVKLALGESVDGIMTNYPNVVVDVLKIDEYQQRFRFATIDDNPWEKYKPYGK
What is the function of this protein?
Dermonecrotic toxins cleave the phosphodiester linkage between the phosphate and headgroup of certain phospholipids (sphingolipid and lysolipid substrates), forming an alcohol (often choline) and a cyclic phosphate (By similarity).  This toxin acts on sphingomyelin (SM) (By similarity).  It may also act on ceramide phosphoethanolamine (CPE), lysophosphatidylcholine (LPC) and lysophosphatidylethanolamine (LPE), but not on lysophosphatidylserine (LPS), and lysophosphatidylglycerol (LPG) (By similarity).  It acts by transphosphatidylation, releasing exclusively cyclic phosphate products as second products (By similarity).  Induces dermonecrosis, hemolysis, increased vascular permeability, edema, inflammatory response, and platelet aggregation (By similarity).
What are the official names of this protein?
Dermonecrotic toxin LiSicTox-alphaII2, Loxtox i5, Phospholipase D, PLD, Sphingomyelin phosphodiesterase D, SMD, SMase D, Sphingomyelinase D.
What is the protein family that this protein belongs to?
Belongs to the arthropod phospholipase D family. Class II subfamily.
What are the subcellular locations of this protein?
Secreted.
Protein: CYB_EIRBA
Sequence: MTNIRKTHPLAKIINNSFIDLPAPSNISAWWNFGSLLGVCLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLFLHIGRGLYYGSYMYLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIVSALAAVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGTLLLVLTLMVLVLFSPDLLGDPDNYIPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAIVPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFAILLVLMPTISIIENNLLKW
What is the function of this protein?
Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain.  The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c.  Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis.
What are the official names of this protein?
Cytochrome b, Complex III subunit 3, Complex III subunit III, Cytochrome b-c1 complex subunit 3, Ubiquinol-cytochrome-c reductase complex cytochrome b subunit.
What is the protein family that this protein belongs to?
Belongs to the cytochrome b family.
What are the subcellular locations of this protein?
Mitochondrion inner membrane; Multi-pass membrane protein.
Protein: PON1E_ANOEM
Sequence: GVGCSSGCHKVGGQCRCG
What are the official names of this protein?
U1-poneritoxin-Ae1e, U1-PONTX-Ae1e, Poneratoxin.
What is the protein family that this protein belongs to?
Belongs to the poneritoxin-Ae1 family.
What are the subcellular locations of this protein?
Secreted.
Protein: DCUP_SULDN
Sequence: MSKIFVDACFGKETPYTPVWMMRQAGRYLPEYMRVRAEAGNFLNLCHDPKKACEVTLQPVDIVGVDAAILFSDILVVPLEMGMDLKFVTGEGPKFDDPIKNEADLDRLFGGDEAASKLTYVYDTIKLIKEQLAEDKALIGFTGAPWTLATYMIEGEGTKTYNICKKMMYSNPKLLHKILSKVTEVVKFYMEKQIEAGIDVVQIFDSWAAAIEPSKYDEFSWKYMVEIADYLKAKYPHIPIIMFPKGIPAFLDKVYGNFEVFGVDWSTPMDLAKEKLGERYVLQGNMEPCRLYSKEETTESVESIQKIMGGKRHIFNLGHGILPDVPVENAKHFIKECHRVSKK
What is the function of this protein?
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
What are the official names of this protein?
Uroporphyrinogen decarboxylase, UPD, URO-D.
What is the protein family that this protein belongs to?
Belongs to the uroporphyrinogen decarboxylase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: SYL_BACFR
Sequence: MEYNFREIEKKWQKIWVDNHTYQVNEDASKQKFYVLNMFPYPSGAGLHVGHPLGYIASDIYARYKRLQGFNVLNPMGYDAYGLPAEQYAIQTGQHPAITTVNNINRYREQLDKIGFSFDWNREIRTCDPEYYHWTQWAFIKMFNSYYCNDEKQARPIEELIEAFSTNGTQGMNVACGEEMDFTADEWNAKSEKEQQEILMNYRIAYLGNTMVNWCPALGTVLANDEVVDGVSERGGYPVIQKVMRQWCLRVSAYAQRLLDGLETVEWTDSLKETQRNWIGRSEGAEMNFKVKDSDIEFTIFTTRADTVFGVTFMVLAPESELVAKLTTPEQKAEVDAYLDRTKKRTERERIADRSVSGVFSGSYAINPLTNEPIPVWISDYVLAGYGTGAIMAVPAHDSRDYAFAKHFNLEIRPLIEGCDVSEESFDAKEGIMMNSPRPGAPEGGLVLNGLTVKEAIAKTKEYIKATGLGRVKVNFRLRDAIFSRQRYWGEPFPVYYKDGMPYMIDESCLPLELPEVAKFLPTETGEPPLGHATKWAWDTVNKCVTDNENIDNRTIFPLELNTMPGFAGSSAYYLRYMDPRNHEALVSPAVDQYWKNVDLYVGGTEHATGHLIYSRFWNKFLHDWGISVAEEPFQKLVNQGMIQGRSNFVYRIKDTNTFVSLNLKDQYEVTPIHVDVNIVSNDILDLEAFKAWRPEYETAEFILEDGKYICGWAVEKMSKSMFNVVNPDMIVEKYGADTLRMYEMFLGPVEQSKPWDTNGIDGVHRFIKKFWSLFYDRNGEYLVKDEPATKEELKALHKLIKKVTGDIEQFSYNTSVSAFMICVNELSSLKCNKKEVLEQLIVVLAPFAPHVCEELWDTLGNTTSVCDAQWPTFNEQYLVEDTVNYTISFNGKARFNMEFPADAASDAIQATVLADERSLKWTEGKTPKKVIVVPKKIVNIVI
What are the official names of this protein?
Leucine--tRNA ligase, Leucyl-tRNA synthetase, LeuRS.
What is the protein family that this protein belongs to?
Belongs to the class-I aminoacyl-tRNA synthetase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: TF65_XENLA
Sequence: MDGFHWTDIVSSMPPSIPPVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTSKTHPTIKINNYQGPARIRISLVTKDSPHKPHPHELVGKDCKDGYYEAELSPDRSIHSFQNLGIQCVKKREVEDAVAHRIRTNNNPFNVSPEELKADYDLNTVCLCFQVFIPDQAAGRMLPLPFVVSQPIYDNRAPNTAELKICRVNKNSGSCLGGDEIFLLCDKVQKEDIEVIFGLGNWEARGIFSQADVHRQVAIVFRTPAFQDTKIRQSVKVQMQLRRPSDKEVSEPMEFQYLPDEGDPHHIDEKRKRTLDNFKHYVKNNPFAGGETRPQRRIAVANRNVPTKSEPIRPSIPVPNPVVSCLPFSMPVLKAENVTSPSTLLSTVNISDFSNLGFSSQPPSQSDHDRLESMLNYPSFPGDANLDLVEMLPHENESRCTSLSSIDNSDFSQLLSESQSSGTLSAALQEPGTSQGTFMAYPESIARLMTNRPNEDEGGERIDSGLINGMFDISREEIHLTSLFELDFSSLLSNMK
What is the function of this protein?
NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis.  NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins.  The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity.  Different dimer combinations act as transcriptional activators or repressors, respectively.  NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors.  NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family.  In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus.  RELA shows a weak DNA-binding site which could contribute directly to DNA binding in the NF-kappa-B complex.
What are the official names of this protein?
Putative transcription factor p65 homolog, XRel1.
What are the subcellular locations of this protein?
Nucleus. Cytoplasm. Note=Nuclear, but also found in the cytoplasm in an inactive form complexed to an inhibitor (I-kappa-B).
Protein: UBID_ALKEH
Sequence: MKYRDLRDFISKLEADGELRRVDVEVDPRLEMTEVCDRTLRAEGPAILFQKPKGYRMPVLGNLFGTPRRVALGMGAEDVSALREIGELLAFLRQPEPPKGLRDAWSQLPVFRKVLDMGPKKVRRAACQEVVVEGDDVDLGRLPVQTCWPGDAGPLITWALVVTRGPEKERQNLGIYRNQVIGRNRTIMRWLAHRGGALDFRDWQRERPGEPFPVAIALGADPATILGAVTPVPDSLSEYGFAGLLRGSKTELVKCLGPDLQVPASAEIVLEGHIHPDDTAPEGPFGDHTGYYNEVDHFPVFTVDRITHRRDPIYHSTYTGRPPDEPAILGVALNEVFVPILRKQFPEISDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVTDDDVNARDWKDVIWAMTTRMDPKRDTVMIDNTPIDYLDFASPVSGLGSKIGFDATHKWPGETDREWGRPIVMDDETRARVDALWPKLGLD
What is the function of this protein?
Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.
What are the official names of this protein?
3-octaprenyl-4-hydroxybenzoate carboxy-lyase, Polyprenyl p-hydroxybenzoate decarboxylase.
What is the protein family that this protein belongs to?
Belongs to the UbiD family.
What are the subcellular locations of this protein?
Cell membrane; Peripheral membrane protein.
Protein: RNH_DESRM
Sequence: MNTNQNTNLKEITMYTDGACSGNPGPGGYGVVMLYKGHRKELSAGFRDTTNNRMELLATIVGLETLKEKCNVNLYTDSQYVVNAIEKGWAKKWRANGWMRNKKEPALNPDLWERLLKLCEFHNVKFNWVKGHAGHPENERCDQLAVAAAKQPNLPLDVR
What is the function of this protein?
Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
What are the official names of this protein?
Ribonuclease H, RNase H.
What is the protein family that this protein belongs to?
Belongs to the RNase H family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: HRCA_BARHE
Sequence: MKHKLIDDELKYLDERSRDIFRHIVEAYLNDGGPVGSRNLSRLLRQTLSPATIRNVMSDLEHLGLIYAPHVSAGRMPTQSGLRFFVDAFMEAGDLPNEERENIEAQVKEAGHAQSVEHFLVQASQVLSDLSRGAGLVLATKHEGTLKHIEFVRLDGEHALAVLVTQQGGVENRIVHLPEGVTHAQLTEATNFLNAHIQGLTLSEAKEEIARLCSETRAALDHLSHHLVETGLALWGGEGADHKIRLIVRGRSNLLEDVKAEEDLKRLRHLFDDLETRESMAQLLDLTDEGSGVRIFIGSENKLFSLSGSSLVVAPYRDSQQKVIGALGVIGPTRLNYARIVPMVDYTAQLVSQLLR
What is the function of this protein?
Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons).  Prevents heat-shock induction of these operons.
What are the official names of this protein?
Heat-inducible transcription repressor HrcA.
What is the protein family that this protein belongs to?
Belongs to the HrcA family.
Protein: FER3_TRIV2
Sequence: MATLTGLTFGGQVWTPQFVEAVNQDKCIGCGRCFKACGRNVLILQALNENGEFVEDEEGEEIERKVMSIIHPEYCIGCQACARACPKNCYTHSPLEHN
What is the function of this protein?
Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
What are the official names of this protein?
Ferredoxin-3, Ferredoxin III, FdIII.
Protein: RHAT_PECCP
Sequence: MSNPILLGIFWHFIGAASAACFYAPFKQVKNWSWETMWSLGGFFSWIILPWCISWWLLPDFWRYYGSFDMATLLPIFLFGAMWGIGNINYGLTMRYLSMSMGIGIAIGVTLIIGTLMTPVLQGKFSVLFGSAGGRMTLLGVLVAVIGVAIVSYAGLLKERVLGIRAEEFNLKKGLILAVMCGIFSAGMSFAMDAAKPMHAAAQAQGINALYVALPSYVVIMGGGAVVNLGFCFMRLATCKGISLKADLAQAKPLLIANALFAILGGVMWYLQFFFYAWGHANIPADYTYISWMLHMSFYVLCGGIVGLLFKEWKSVGQKPVRTLVLGCMVIILAANVVGLGMAA
What is the function of this protein?
Uptake of L-rhamnose across the cytoplasmic membrane with the concomitant transport of protons into the cell (symport system).
What are the official names of this protein?
L-rhamnose-proton symporter, L-rhamnose-H(+) transport protein.
What is the protein family that this protein belongs to?
Belongs to the L-rhamnose transporter (TC 2.A.7.6) family.
What are the subcellular locations of this protein?
Cell inner membrane; Multi-pass membrane protein.
Protein: PNP_DESDA
Sequence: MSQDIFTPTRVTCQVGGKEIIIESGRMANQAHGEVWIQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIPGSFFRREIGRPSERETLVARLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVLALTGASAALMLSPLPFEGPVAGGRIARVGGQFVLNPTFEQQAQSDLNIVFAASGDALTMVEGDARFISEDVIIEALEWGRLQILPLVEIQHKLRELCGKPKMNFTPHQDDEALVACVHELALANGMEEALRVPEKMARKDARKAVKDKVMETLKADPAWAENEAALKAVSDILGGLEKKLVRARIVNEGTRIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETKSLVVATLGSSTDEQRMDSLTGDVTKRFMLHYNFPPFSVGEVKPVRVSRREIGHGALAEKSLRPVLPADADFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLIKEGEKFIVLTDILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTEIMRTAMQQAREGRLHILEEMAKAIASPRKELSRYAPQHAEVFVNPDIIRLIIGPGGKNIKAITAATGASVDIEDSGRVSIFAPTAEALEKAREMVSYYDQRPDLGKNYNAKVRKIMEIGAIVEVLPNVEALVHVSQLDVNRVEQPGDVARLGEDMLVKVIEINGDRIRASRKAVLLEEQGHPWNPEDTARPQRSDRGDRGDRRGDRGGRDRRDRGDRR
What is the function of this protein?
Involved in mRNA degradation.  Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.
What are the official names of this protein?
Polyribonucleotide nucleotidyltransferase, Polynucleotide phosphorylase, PNPase.
What is the protein family that this protein belongs to?
Belongs to the polyribonucleotide nucleotidyltransferase family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: NUON_RHIWR
Sequence: MSMTASLALTVPELILSVGALLLLLVAAFGGDGFARAIGWGAVALFAAAGFSLTGPAGNGGPGFDGLYIADSFAAFAKLLIYIAAAVSVAVAPGFFSRTGGGYRAEYPVLILLSGVGMGMMVSAGDLLTLYVGLELQSLSAYVLASFMRRDTRSAEAGLKYFVLGALASGILLYGISLLYGFTGTTLFAGISDSLAKGMGTGQMFGMVFVFAGLAFKISAVPFHMWTPDVYEGAPTPVTAFFASAPKVAGMALLLRVAIEAMGSGTDTWRQIVVFAALASTILGAVAAIGQTSMKRLLAYSSINNVGFALFGLAAGSADGVAATMTYMAVYVAMTLGSFICVLQMRGQDGQPVETIASLSGLSRSRPGLAAAFAIFMFSLAGIPPLFGFWPKFLVFDALVRAGFWPLAMVGIATSVIGAFYYLKIVKTIYFDDPAPAEFAPAASKLEGGLITLAALAVSPLGYLAIPLLDATSMAAARSLF
What is the function of this protein?
NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.  The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone.  Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
What are the official names of this protein?
NADH-quinone oxidoreductase subunit N, NADH dehydrogenase I subunit N, NDH-1 subunit N.
What is the protein family that this protein belongs to?
Belongs to the complex I subunit 2 family.
What are the subcellular locations of this protein?
Cell inner membrane; Multi-pass membrane protein.
Protein: RL1_ECO8A
Sequence: MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASVN
What is the function of this protein?
Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.
What are the official names of this protein?
50S ribosomal protein L1.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL1 family.
Protein: EX7L_VIBC3
Sequence: MSSSLANRNIYTVSRLNSEVRLLLENEMGIVWLVGEISNFSAPVSGHWYLTLKDSQAQVKCAMFKGNNRLVNFKPQNGQQVLVKARLSLYEPRGDYQIILESMQPEGDGRLQQQFEQLKMQLAAEGLFAQTRKKPLPENPRCVGIITSRTGAALHDILHVLKRRDPNLPVVIYPTLVQGEEAAIQIAQAIGRANTRAECDVLIVGRGGGSLEDLWCFNHEIVARTIAASEIPIISAVGHEIDVTIADFVADVRAPTPSAAAELVSRDHRHKQQALHQWQAKLASTMRHYLAQQETQFARLQHKLDKQHPQARLERQQQQLDELSLRLEQKMQQRLATQQQRWDRLSHKIELHSPIHLIRQQRFNLIQQEQRINQSIQRYLIQSRHQLALLSEKLDAVSPLAALARGYSVTRTTQGELVRQSAQVKPGDTLVTQLMDGEILSTVNSR
What is the function of this protein?
Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.
What are the official names of this protein?
Exodeoxyribonuclease 7 large subunit, Exodeoxyribonuclease VII large subunit, Exonuclease VII large subunit.
What is the protein family that this protein belongs to?
Belongs to the XseA family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: REN3A_HUMAN
Sequence: MRSEKEGAGGLRAAVAARGPSGREKLSALEVQFHRDSQQQEAETPPTSSSGCGGGAGKPREEKRTALSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGEEPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEKREEAE
What is the function of this protein?
Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons by associating with the nuclear exon junction complex (EJC) and serving as link between the EJC core and NMD machinery.  Recruits UPF2 at the cytoplasmic side of the nuclear envelope and the subsequent formation of an UPF1-UPF2-UPF3 surveillance complex (including UPF1 bound to release factors at the stalled ribosome) is believed to activate NMD.  However, UPF3A is shown to be only marginally active in NMD as compared to UPF3B.  Binds spliced mRNA upstream of exon-exon junctions.  In vitro, weakly stimulates translation.
What are the official names of this protein?
Regulator of nonsense transcripts 3A, Nonsense mRNA reducing factor 3A, Up-frameshift suppressor 3 homolog A, hUpf3.
What is the protein family that this protein belongs to?
Belongs to the RENT3 family.
Protein: RL30_BUCAI
Sequence: MKNIKITQIKSAIGRLPKHKKTLIGLGLRYIGHTVIREDTPSIQGMVKKISYILKIQEE
What are the official names of this protein?
50S ribosomal protein L30.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL30 family.
Protein: PYRDA_STRU0
Sequence: MVSTATQIAGFNFDNCLMNAAGVYCMSKEELLEIETSAAGSFVTKTGTLEAREGNPEPRYAPTPLGSINSMGLPNMGYDYYLDVVLDLEKEENSKNHFISVVGLSPEDTHTILKTLHSSAYQGLVELNLSCPNVPGKPQIAYDFETTEQLLTEIFSYYTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNSVNSIGNGLVIDDETVIIKPKNGFGGIGGDYIKPTALANVHAFYQRLNPSIQIIGTGGVKSGRDAFEHILCGASMVQIGTALQEEGPEIFTRITEELKQIMVEKGYQRLDDFRGKLHYLD
What is the function of this protein?
Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor.
What are the official names of this protein?
Putative dihydroorotate dehydrogenase A (fumarate), DHOD A, DHODase A, DHOdehase A.
What is the protein family that this protein belongs to?
Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: NUOH_FLAPJ
Sequence: MDSAFIIEKSVVIVAVFALTMLMAMYSTWAERKVAAFLQDRVGPNRAGWGGLLQPLADGLKLFSKEEFEPNTPNKFLFVVGPAIAMSTALMTSAVIPWGDKLHLFGRDILLQATDIDNALLYIFAVVSVGVYGIMIGGWASNNKFSLMGAVRAASQMVSYEVAMGLSMIALLMMTGTLSLKEISAQQSGMNWNVFYQPVSFLIFLICAFAETNRTPFDLAECESELIGGYHTEYSSMKMGFYLFAEYANMFISSAILAILFFGGYNYPGMQWMVENVGVNTANILGFLALFIKICGFIFFYMWVRWTIPRFRYDQLMHLGWRILIPLAILNIMVTGICLLLFK
What is the function of this protein?
NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.  The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone.  Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.  This subunit may bind ubiquinone.
What are the official names of this protein?
NADH-quinone oxidoreductase subunit H, NADH dehydrogenase I subunit H, NDH-1 subunit H.
What is the protein family that this protein belongs to?
Belongs to the complex I subunit 1 family.
What are the subcellular locations of this protein?
Cell inner membrane; Multi-pass membrane protein.
Protein: FLAG_VIBCH
Sequence: MEIPSYASNIQPYGSQSGTKIASENDNAKSVSLSGDNSRSVSRTDKLSEHFSEQVRARQQESAETAMAQAKQRQRLNEEQLAKMVEQMNEFVKSINKGLSFRLDRESGREVVTIYEASTGDIIRQIPEEEMLEVLRRLAREQDHRSGLLMAKV
What are the official names of this protein?
Protein FlaG.
What is the protein family that this protein belongs to?
To FlaG in other Vibrio species.
Protein: RL1_BEII9
Sequence: MTHVGKRVVKNREGIDRVKLYPVDEAVKLIKERANAKFDETVEIAMNLGVDPKHADQMVRGVVNLPNGTGRTLRVAVFARGAKADEALAAGADIVGAEDLVATVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIIQGSVGKASFETEKLLENIAAFVDAVAKAKPQGAKGTYIQRVALSSTMGPGVKIDPATVTA
What is the function of this protein?
Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.
What are the official names of this protein?
50S ribosomal protein L1.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL1 family.
Protein: YR599_MIMIV
Sequence: MLFKKIDDINPLILLIDSCQYTNQIMNSYRHRNQTTSFIRKETIDCNIQLPRKIESDLLLSLSSNTDDYIPIINSLSNEDHINILKYTIVIDNVNYLEKILNCTSIDLSVNDDILLCTAIINCSSECLLYLLDKGIPIDFCDNYAIRACCIRLEKYIYTTRKNKSSCDMLKIVIDRGGNVNTHNYEPLYSAVNDNNFDKIKLLVENGANKLSDFKRKITNTNLEIFQYLIDNRVELEVNFDDIFLQSIINDDSECMKLFIELGANINSIPTLELTKIIINARHEILEILINYGLDINNINDKINNEINDNRCEDYDETIKTVELVSNAGIDIINLLKVVIQNALSVYNFTYPKYSI
What are the official names of this protein?
Putative ankyrin repeat protein R599.
Protein: RSMG_BACMK
Sequence: MNIEQFQSMLEEKGISLSSRQLEQFGIYFETLVEWNEKMNLTAITEKEEVYLKHFFDSVTAAFYYDFSKPFSICDVGAGAGFPSIPLKICFPHLKVKIVDSLQKRINFLNHLAQKLELSDVAFCHDRAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGELKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPIEK
What is the function of this protein?
Specifically methylates the N7 position of guanine in position 535 of 16S rRNA.
What are the official names of this protein?
Ribosomal RNA small subunit methyltransferase G, 16S rRNA 7-methylguanosine methyltransferase, 16S rRNA m7G methyltransferase.
What is the protein family that this protein belongs to?
Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
What are the subcellular locations of this protein?
Cytoplasm.