PharMolix/UniProtQA huggingface dataset:
Protein: PSMD2_PONAB
Sequence: MEEGGRDKAPVQPQQSPAAALGGTDEKPSGKERRDAGDKDKEQELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIIPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNYDL
What is the function of this protein?
Binds to the intracellular domain of tumor necrosis factor type 1 receptor.  The binding domain of TRAP1 and TRAP2 resides outside the death domain of TNFR1.
What are the official names of this protein?
26S proteasome non-ATPase regulatory subunit 2.
What is the protein family that this protein belongs to?
Belongs to the proteasome subunit S2 family.
Protein: ARNF_SALG2
Sequence: MGVMWGLISVAIASLAQLSLGFAMMRLPSIAHPLAFISGLGALNAATLALFAGLAGYLVSVFCWHKTLHTLALSKAYALLSLSYVLVWVASMLLPGLQGAFSLKAMLGVLCIMAGVMLIFLPARS
What is the function of this protein?
Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane.
What are the official names of this protein?
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, L-Ara4N-phosphoundecaprenol flippase subunit ArnF, Undecaprenyl phosphate-aminoarabinose flippase subunit ArnF.
What is the protein family that this protein belongs to?
Belongs to the ArnF family.
What are the subcellular locations of this protein?
Cell inner membrane; Multi-pass membrane protein.
Protein: BBS4_BOVIN
Sequence: MAEEKLSARTQLPVSAESQKPVLKKAPEFPILEKQNWLIHLYYIQKDYEACKAVIKEQLQETHGLCEYAIYVQALIFRLEGNIQESLRLFQMCAFLSPQCADNLKQVARSLFLLGKHKAAIEVYNEAAKLNQKDWEICHNLGVCYIYLKQFDKAQDQLHNALHLNRHDLTYIMLGKIFLLKGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNTLTYDPTNYKAILAAGSMMQTHGDFDVALTKYKVVACAVIESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPLDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDSENAKRAYEEAVRLDKCNPLVNLNYAVLLYNQGEKRDALAQYQEMEKKVNLLKYSSSLEFDPEMVEVAQKLGAALQVGEALVWTKPVKDPKSKHQTASTSKAAGFQQPLGSNQALGQAMSSAATCRKLSSGAGGTSQLTKPPSLPLEPEPTVEAQPTEASAQTREK
What is the function of this protein?
May be required for the dynein-mediated transport of pericentriolar proteins to the centrosome.  Required for microtubule anchoring at the centrosome but not for microtubule nucleation.  The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.  This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome.  Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane.  Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane (By similarity).
What are the official names of this protein?
Bardet-Biedl syndrome 4 protein homolog.
What is the protein family that this protein belongs to?
Belongs to the BBS4 family.
What are the subcellular locations of this protein?
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Cell projection, cilium membrane. Cytoplasm. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriolar satellite. Cell projection, cilium, flagellum. Cell projection, cilium. Note=Localizes to the pericentriolar material. Centrosomal localization requires dynein (By similarity). Localizes to the connecting cilium of photoreceptor cells (By similarity).
Protein: HBEAG_WHV3
Sequence: MYLFHLCLVFACVPCPTFQASKLCLGWLWGMDIDPYKEFGSSYQLLNFLPLDFFPDLNALVDTATALYEEELTGREHCSPHHTAIRQALVCWDELTKLIAWMSSNITSEQVRTIIVNHVNDTWGLKVRQSLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPYRPPNAPILSTLPEHTVIRRRGGARASRSPRRRTPSPRRRRSQSPRRRRSQSPSANC
What is the function of this protein?
May regulate immune response to the intracellular capsid in acting as a T-cell tolerogen, by having an immunoregulatory effect which prevents destruction of infected cells by cytotoxic T-cells.  This immune regulation may predispose to chronicity during perinatal infections and prevent severe liver injury during adult infections.
What are the official names of this protein?
External core antigen, HBeAg, Precore protein, p25.
What is the protein family that this protein belongs to?
Belongs to the orthohepadnavirus precore antigen family.
What are the subcellular locations of this protein?
Secreted. Host nucleus.
Protein: RK14_EUCGG
Sequence: MIQPQSHLNVADNSGARELMCIRIIGASNRRYAHIGDIIVAVIKEALPNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
What is the function of this protein?
Binds to 23S rRNA.
What are the official names of this protein?
50S ribosomal protein L14, chloroplastic.
What is the protein family that this protein belongs to?
Belongs to the universal ribosomal protein uL14 family.
What are the subcellular locations of this protein?
Plastid, chloroplast.
Protein: DNAJ_BORPA
Sequence: MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAGMGGGMGGGMGGGFADAFGDIFGEIFGAGRRGGGGPQVYRGADLKYALEITLEQAASGFDTEIRVPSWENCDTCHGSGAKAGTSPKTCRTCGGSGAVRMQQGFFSVQQTCPTCHGTGKEITDPCPSCDGVGRTRRNKTLQVKIPAGIDDGMRIRSSGNGEPGINGGPPGDLYVEIHIKQHKIFQRDGDDLHCELTIPFTTAALGGELQVPTLGGKAEISIPEGTQSGKTFRLRAKGIRGVRGSYPGDLYCHVVVETPVRLSDEQKAILRQFEASLNDGGDRHSPQSKSWTDRVKEFFS
What is the function of this protein?
Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion.  Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex.  GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle.  Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding.  Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
What are the official names of this protein?
Chaperone protein DnaJ.
What is the protein family that this protein belongs to?
Belongs to the DnaJ family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: G3PA_SPIOL
Sequence: MASNMLSIANPSLRVYNKGFSEFSGLHTSSLPFGRKGSDDLMAFVSFQTNAVGGKRSSQNGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ
What are the official names of this protein?
Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic, NADP-dependent glyceraldehydephosphate dehydrogenase subunit A.
What is the protein family that this protein belongs to?
Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
What are the subcellular locations of this protein?
Plastid, chloroplast.
Protein: RL14E_PYRAE
Sequence: MVKVIDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDIKRGASDDEVAKAIEAAGLVEYMRERVKPSFVGITKAETK
What are the official names of this protein?
50S ribosomal protein L14e.
What is the protein family that this protein belongs to?
Belongs to the eukaryotic ribosomal protein eL14 family.
Protein: IGLO5_HUMAN
Sequence: MPPPAPGARLRLLAAAALAGLAVISRGLLSQSLEFNSPADNYTVCEGDNATLSCFIDEHVTRVAWLNRSNILYAGNDRWTSDPRVRLLINTPEEFSILITEVGLGDEGLYTCSFQTRHQPYTTQVYLIVHVPARIVNISSPVTVNEGGNVNLLCLAVGRPEPTVTWRQLRDGFTSEGEILEISDIQRGQAGEYECVTHNGVNSAPDSRRVLVTVNYPPTITDVTSARTALGRAALLRCEAMAVPPADFQWYKDDRLLSSGTAEGLKVQTERTRSMLLFANVSARHYGNYTCRAANRLGASSASMRLLRPGSLENSAPRPPGLLALLSALGWLWWRM
What are the official names of this protein?
IgLON family member 5.
What is the protein family that this protein belongs to?
Belongs to the immunoglobulin superfamily. IgLON family.
What are the subcellular locations of this protein?
Secreted.
Protein: CT0C1_CONVE
Sequence: MLCLPVFIILLLLASPAAPNPLQTRIQSNLIRAGPEDANIKTDKRVISGLLASILVPLIDAIIG
What are the official names of this protein?
Conotoxin VnMLCL-033.
What is the protein family that this protein belongs to?
Belongs to the conotoxin T superfamily.
What are the subcellular locations of this protein?
Secreted.
Protein: RL29_PIG
Sequence: MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCRPKSQAKAQSKAKATAGGTAAAPVPPASAPKGAQAPTKAPQ
What is the function of this protein?
Component of the large ribosomal subunit.  The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.
What are the official names of this protein?
60S ribosomal protein L29.
What is the protein family that this protein belongs to?
Belongs to the eukaryotic ribosomal protein eL29 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: MIG38_CAEEL
Sequence: MSYEEDDWFSYRTEFNKRADSPRAAGNYDFESGNIDNIPLNDDGPLSPSQDFDLAGTLEEYESYDLRLSPNGGLNREDQQPGPSGNNDGQYHVMQNNDSFAQHMQSSNTIEYNSFEMPTVINSNHDVGPYQDLGIDDPNSFYANQQPSTSQGNDMIINENYEMMGPSTSYMPQIDHMNPSGNSSSQINHQQGMIVPQVQQQPAKPKTTKKRPPPKKKTAAQAPDTVGTVLTKVNKLTQQIDNNNDNQEQKIETRISAEDLVRVSALLSRLDVYQKEQAQGNNTHDQDIEALQAEIAQVFTKNMAMSANDAPGNSILSQIQNLTSIGSSASSSAQPSQPAKKAAPKRKTVPNTAKNLAQNQQIMPPQAQITPTKLVMDPPTTTMVPSSSQSNHMYSNDGFTTYNQMDEPGTSQQQQYNDYRQPPSQESMQYGHQQIIQARVVPSMNQKTHNYRQAVVFASPNTNGPSSQLQRPQSGMDQMQDQQYHAQDLQGSQVQQTFVSVQHDGQIYQEVEPTLRDFVRQGRYQGPQDAPHLRQQLITNVNATTNKQMVHRSQDPTPSPGNLQQFGEPLQRHGSYPHSHDMRPNSHSQSQHSYSNHYDGATEFFDVSMQHQDSQMSQIQPGSQHYVQQQELYHPIGDQQQMVEPESEYPVPQVTNELSEEELRAIMEEKRQIRQKRLKDIMIDQLNRLEEPVDVTPFRNKMDVLERLLPYHHFANEEEPVSDFDSTFQRVMDNAVHQANSIGNRIRNIVLRDTMRSSTEWEENMILFLETESERRKLEDDKKLADQDLSTFLRNSDIIQNVRARRLDVERTRLRVPRIPAHLKELDLQNGQLSSLYREYEFDSYDENRPRGSPFVYEEPESESESEPEAEPEPKKDNFAEPEPARGDISPLIGFPQLSPIPSPSRYRNESESTFDWKDEDESPLLSPETEKINKAADQFRKEIFGTQEDLDKSEPFPFEQISEAARNQHLITAQPQLPRVDASSIGSLASSSSTVDHSPQSIHPVFSPKAAIQSSSVQVMKPPRSPSSVSCKLSTPCVEQSLPEESHYEGSPEIDEDYDMSPIRENEPAELISLPISVNMIKKEKEDSTPKLKLRIPAAVLQNGIVASEDESDVAVEETIPAIRKPLKLRFNLKDIKLEEPSPDRDVASSRPKSRTEPPPTPEKLHVKIKASPAETTPTKLQLKEKSPAKTPVFKTPLQTPIKMTPSPSESRKRRSAKIEDSPAQKKKLLNSGSSFVTPKNGLRAELDETVERPLRIMTDGRKIVMKISKVSRNINHFVTPRRDKKGNLHKDLSPTNYTRLTMKLMKKKGELSVEFTETPNKNSEEDDHKIPNIPSTSTSIPPASTVVSSVSVKGRPAPASRKSSIDTAGKDKKGQLAKNKAAFCNRFNPFANVPSSKPSTSSAVSATPSTSSAVSAKLPTGKTPGRPVALSTPRSSHKPPQAVVAPRPNLIRTAPVVPKITVTNASESSLPSKSHIPIEVKPKLSSLLPWVSDTDESPEQKHKLKKTMPSINLLKVKTEPPEADAVTSKPESPRASSSMSFFEDAFLRSPKRSNEPLPVVEFSDDEENDLAHSTFSHATDHLLGTSNMNSSTNGSSSGLPWSTDP
What is the function of this protein?
During gonad development, involved in distal tip cell (DTC) migration from the dorsal side of the hermaphrodite body to the midbody which allows for the formation of gonad arms.  Role in gonad DTC migration may be in association with integrin related proteins ina-1 and mig-15.
What are the official names of this protein?
Abnormal cell migration protein 38.
What are the subcellular locations of this protein?
Nucleus. Cytoplasm.
Protein: NCMP_SACSY
Sequence: MVFDRLAGIYDATGVEFFRPVARRLLDLVDPRPGVDLLDVGCGRGAVLFPAAERVGPGGTVVGIDIAEPMVRATAAEAAERGLGTVSVRLGDGADPAFPAGSFDVVTASMSAALFPDLPAVAARYARLLRPDGRIGLTGPVPPPSLREWALGPLRVGAVVDAIAPEAVAATHPRIAALLGAHPFGAPGAVADALRAAGFVEVRELHEDLELRAPSAEALVGWTWSNGLRVYWELVEPDRRAAVAAELVRDLTAHAAGGPITATYPVAYVTGRLRPAGGTP
What is the function of this protein?
Involved in the biosynthesis of nocamycin I and nocamycin II (PubMed:28818448).  Catalyzes the methylation of nocamycin E to yield nocamycin I (PubMed:28818448).
What are the official names of this protein?
Nocamycin O-methyltransferase, Carboxylate O-methyltransferase.
What is the protein family that this protein belongs to?
Belongs to the methyltransferase superfamily.
Protein: YCCJ_SHIFL
Sequence: MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
What are the official names of this protein?
Uncharacterized protein YccJ.
Protein: GUAA_PROMP
Sequence: MSKKLLKKERDPSILILDFGSQYSELIARRIREADVFSLVVSNFTSVKEIQDINPKGIILSGGPSSVYEDNAPKCDAKIFDLGIPILGICYGMQLMVKELGGEVTPAINKAEYGRAPINIDCESDLLSNVQDKSIMWMSHGDSINNLPEGFIKISHTENTLHAAISNKQKKLFGVQFHPEVIHSEFGMTVIKNFVYSIAKCKADWTTETFLEETIPRIKQQVGDKRVLLALSGGVDSSTLAFLLNKAIGKKLTCMFIDQGFMRKGEPEFLMEFFDKKFHIKVEYINARERFIDKLNGITDPEEKRKIIGREFIRVFEEESNRLGPFQYLAQGTLYPDVIESAGTNLDPKTGERIAVKIKSHHNVGGLPKDLQFKLVEPLRKLFKDEVRKVGGALGLPDEIIKRHPFPGPGLAIRILGDVSHEKLNCLRDADWIVRDEIKKAGLYNDIWQAFAVLLPVKTVGVMGDKRTYAWPIVLRCVSSEDGMTADWSRIPYETLERISNRIVNEVEQVNRVVFDITSKPPGTIEWE
What is the function of this protein?
Catalyzes the synthesis of GMP from XMP.
What are the official names of this protein?
GMP synthase [glutamine-hydrolyzing], GMP synthetase, Glutamine amidotransferase.
Protein: RECF_ECO24
Sequence: MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD
What is the function of this protein?
The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility.  RecF binds preferentially to single-stranded, linear DNA.  It also seems to bind ATP.
What are the official names of this protein?
DNA replication and repair protein RecF.
What is the protein family that this protein belongs to?
Belongs to the RecF family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: YTF2_SACSH
Sequence: MECPVCGSNEIVWDNKNGEVVCSNCGIIIDNIYYSGQNESESTDTIIISNTFYKDEILIKELRIKNFLKKNRIKNKKTDQYEIILRSMLVDAQYKKIYKVLYDEGILSGLKAKSKLGLLIYFRFALNDRYLHQLKEFNIKNENLRKILKRIGRKRLTLIFDKLNEESDRI
What are the official names of this protein?
Uncharacterized protein ORF2 in thsB 5'region.
Protein: BAM_DROME
Sequence: MLNARDVCPEGNDDQQLDHNFKQMEEHLALMVEGNENEDPRKATCEYEDTNEDGATCTSGVLSEIQENFGRLRLCDVTAPLLEFHGLDCLQQIQKRSRHFAFDGSPAKKSRSGGVLVTGPKQKQLQKENVWNRKSKGSASADNIEKLPITIEKLHMIGLHGDCLEHNAVLRLMNLFRSLHDHLTADLGFSRQNSMPSDYLFDMPVKSTMPKSLNVRYQLQVLCTKVERFLVQQRRTLEANRHFDFEKYDECDKLLKGFASYLDNFKLLLKPKMRNRNGNSGSNADKFHTQRMERLLIGLRDWIKAAHLSVHVFNWEMDLEHRYSGAMTESHKSLNERAILLSGAELRAAEARGISAEDLFIAQRYKLGGPIYCVLEQHEFLSALIANPETYFPPSVVAICGPQKLGAVSMEQPSASEEEFEETEEVPSSPPRHTGRVPRFRS
What is the function of this protein?
Required to initiate both male and female gametogenesis.  May regulate cystoblast cell divisions.
What are the official names of this protein?
Protein bag-of-marbles.
Protein: ACP_SHIB3
Sequence: MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA
What is the function of this protein?
Carrier of the growing fatty acid chain in fatty acid biosynthesis.
What are the official names of this protein?
Acyl carrier protein, ACP.
What is the protein family that this protein belongs to?
Belongs to the acyl carrier protein (ACP) family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RUVA_MYCMM
Sequence: MISSLRGEVLEVALDHVVIEAAGVGYRVNATPSTLATLRQGTDARLITAMIVREDSMTLYGFVDGETRDLFLTLLSVSGVGPRLAMATLSVHDANGLRQALADGDVTALTRVPGIGKRGAERMVVELRDKVGPAGSAATAPAVNGHTVRAPVVEALVGLGFAAKQAEEATDKVLAGDGEATTSSALRAALSLLGKAR
What is the function of this protein?
The RuvA-RuvB-RuvC complex processes Holliday junction (HJ) DNA during genetic recombination and DNA repair, while the RuvA-RuvB complex plays an important role in the rescue of blocked DNA replication forks via replication fork reversal (RFR).  RuvA specifically binds to HJ cruciform DNA, conferring on it an open structure.  The RuvB hexamer acts as an ATP-dependent pump, pulling dsDNA into and through the RuvAB complex.  HJ branch migration allows RuvC to scan DNA until it finds its consensus sequence, where it cleaves and resolves the cruciform DNA.
What are the official names of this protein?
Holliday junction branch migration complex subunit RuvA.
What is the protein family that this protein belongs to?
Belongs to the RuvA family.
Protein: MNMA_VIBPA
Sequence: MSDNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEYCTAAEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADYIAMGHYVRRSFPENGEKPQMLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNIETPEGEVIGQHQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHWVDREPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYKDDVCLGGGIIEQRIKYSQA
What is the function of this protein?
Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
What are the official names of this protein?
tRNA-specific 2-thiouridylase MnmA.
What is the protein family that this protein belongs to?
Belongs to the MnmA/TRMU family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: CDPAS_THEKO
Sequence: MGWLSSIFWAFWYILPAYFANASPVLVGGGRPIDGGRVWRDGRRLLGDGKTWRGFIGGVLIGTLVGIVQYFITPDFYGSLETAVKLAFLLSFGALIGDLVGSFIKRRANLPRGYPAIGLDQLGFLISALAFAYPVKTLSSGQIIFLLVVSPFIHWGANYFAYRMGWKSVPW
What is the function of this protein?
Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1-phosphate (DGGGP) and CTP.  This reaction is the third ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
What are the official names of this protein?
CDP-archaeol synthase, CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase.
What is the protein family that this protein belongs to?
Belongs to the CDP-archaeol synthase family.
What are the subcellular locations of this protein?
Cell membrane; Multi-pass membrane protein.
Protein: SYV_XANCP
Sequence: MTQLASSYDPSSFESRLYAQWESAGHFKPSGSGEPYTVLLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNLALEGKGETRDTLGREGFIAKVWEWKAQSGDTIERQMRRLGTSSDWSRSTFTMDPQPSAAVTEAFVRWYEQGLIYRGQRLVNWDPVLKTAISDLEVENVEEDGFLWSIRYPLADGVTYEHVEHDADGVETLRETRDYLVVATTRPETMLGDTAVMVHPDDARYATLHAAQIVLPLTGRLVPVITDDYVDRAFGTGVVKVTPAHDFNDYQVGVRHDLPLINLFTVTAAINDNAPERYRGLDRYDARKLVLSELEDLGLLVETKPHKLQVPRGDRTGQVIEPYLTDQWFVKMDALAKRGLELVESGQVKFVPPNWINTYRHWMENIQDWCISRQLWWGHRIPAWFDEAGKCYVGHDEAQVRATHGLGAEVALHQDSDVLETWFSSQLWPFSTLGWPDAQAMDERGFARYLPSSVLVTGFDIIFFWVARMIMATDSFTGQVPFRDVYITGLIRDAQGQKMSKSKGNVLDPLDIIDGISIEDLVAKRTSGLMQPRMAEKIEKATRKEFPDGIIAHGADALRFTIAALATHGRDIKFDLGRAEGYKNFCNKLWNATRFALMNTEGAQFSGVPQPQTETERWILARLDAVAAEAQAHYANYRFDLLAQTLYEFAWNAFCDWFVELAKPALNGAVQDAADSTRHTLLYVLEALLRLLHPLTPFVTEELWQQVAPRLGITGDTISLQAFPQRGDVDTSGYAGAEADIEWLKAMVSALRRVRSELNVPPSKQVRLWLQAGSSDDRARVARFASQLAFLLKLEAIDWLAAGQEAPPAAAAIVGELTLLVPLEGLVDMDAERTRLDKEIKRVENEIGKCNGKLGNATFVQNAPAAVVEQERARLNDWTTQLTGLREQRAKL
What is the function of this protein?
Catalyzes the attachment of valine to tRNA(Val).  As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.
What are the official names of this protein?
Valine--tRNA ligase, Valyl-tRNA synthetase, ValRS.
What is the protein family that this protein belongs to?
Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: Y1956_ALKCK
Sequence: MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAARQGEPDPELNQALKAVLERAKTYNVPKSIIDRAIEKAKGGSDESYEERRYEGFGPNGAMVIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDRVAVIGFEGKTADEALEILMDADVDAKDIIEEDDTVIVYAEPDQFHAVQEAFRNAGIEEFSVAEFSMIAHNEVTLSEDVQAQFEKMIDAIEDLEDVQQVYHNVDLA
What are the official names of this protein?
Probable transcriptional regulatory protein ABC1956.
What is the protein family that this protein belongs to?
Belongs to the TACO1 family. YeeN subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RSMA_PROM0
Sequence: MNSKNYHQKKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLNSEIKKLHAIELDKDLINLLNDKFNNNDKFSLQQGDILSVNLDSINKKITKVIANIPYNITGPILDIFIGRLGIIRKYNYEKIIFLMQKDVVDRILSKEGSPNAGALSIRMQLLSKIKRICDVPPSSFSPPPKVFSSLVVFEPIKNDLRLDISLEKYIDKLLRISFNSRRKMLRNTLNTILSNEEINELSESSKVCFNLRPQDISIDQWIKLAENCIKIKK
What is the function of this protein?
Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle.  May play a critical role in biogenesis of 30S subunits.
What are the official names of this protein?
Ribosomal RNA small subunit methyltransferase A, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase, 16S rRNA dimethyladenosine transferase, 16S rRNA dimethylase, S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase.
What is the protein family that this protein belongs to?
Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: RHA1B_ARATH
Sequence: MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLALSTSATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFLPEEKSTPFDWGTSDWFRDEVESTN
What is the function of this protein?
Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro.
What are the official names of this protein?
E3 ubiquitin-protein ligase RHA1B, RING-H2 finger A1b, RING-H2 zinc finger protein RHA1b, RING-type E3 ubiquitin transferase RHA1B.
Protein: TSR3_SULIK
Sequence: MKVYVIDYHKDDPKKCTGRKLVKLKLAELTRVGRGIILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRLPILFAGNPIHYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAYRNKDEEEIKKIEKEIIEKILRK
What is the function of this protein?
Aminocarboxypropyltransferase that catalyzes the aminocarboxypropyl transfer on pseudouridine corresponding to position 914 in M. jannaschii 16S rRNA.  It constitutes the last step in biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi).
What are the official names of this protein?
16S rRNA aminocarboxypropyltransferase.
What is the protein family that this protein belongs to?
Belongs to the TDD superfamily. TSR3 family.
What are the subcellular locations of this protein?
Cytoplasm.
Protein: APAG_METC4
Sequence: MYKAETRGIMVTVEPRFVEEESSPGESRYFFAYTVEIVNNGSEQVQLRSRHWRIIDGRGACQEVRGAGVVGKQPVLEPGESFSYTSGCPLTTPDGLMAGSYTMSTIGGESFEAEIPAFSLDSPHLRRVVH
What are the official names of this protein?
Protein ApaG.