Transgenic plant
Transgenic plants possess a gene or genes that have been transferred from a different species. Although DNA of another species can be integrated in a plant genome by natural processes, the term "transgenic plants" refers to plants created in a laboratory using recombinant DNA technology. The aim is to design plants with specific characteristics by artificial insertion of genes from other species or sometimes entirely different kingdoms. See also Genetics, List of genetic engineering topics.
Varieties containing genes of two distinct plant species are frequently created by classical breeders who deliberately force hybridization between distinct plant species when carrying out interspecific or intergeneric wide crosses with the intention of developing disease resistant crop varieties. Classical plant breeders use a number of in vitro techniques such as protoplast fusion, embryo rescue or mutagenisis to generate diversity and produce plants that would not exist in nature (see also Plant breeding, Heterosis, New Rice for Africa).
Such traditional techniques (used since about 1930 on) have never been controversial, or been given wide publicity except among professional biologists, and have allowed crop breeders to develop varieties of basic food crop, wheat in particular, which resist devastating plant diseases such as rusts. Hope is one such wheat variety bred by E. S. McFadden with a gene from a wild grass. Hope saved American wheat growers from devastating stem rust outbreaks in the 1930s.
Methods used in traditional breeding that generate plants with DNA from two species by non-recombinant methods are widely familiar to professional plant scientists, and serve important roles in securing a sustainable future for agriculture by protecting crops from pests and helping land and water to be used more efficiently. (see also Food security, International Fund for Agricultural Development, International development)

# Natural movements of genes between species.
Natural movement of genes between species, often called horizontal gene transfer or lateral gene transfer, can occur because of gene transfer mediated by natural processes.
This natural gene movement between species has been widely detected during genetic investigation of various natural mobile genetic elements, such as transposons, and retrotransposons that naturally translocate to new sites in a genome, and often move to new species over an evolutionary time scale. There are many types of natural mobile DNAs, and they have been detected abundantly in food crops such as rice .
These various mobile genes play a major role in dynamic changes to chromosomes during evolution , , and have often been given whimsical names, such as Mariner, Hobo, Trans-Siberian Express (Transib), Osmar, Helitron, Sleeping Princess, MITE and MULE, to emphasize their mobile and transient behavior.
Genetically mobile DNA contitututes a major fraction of the DNA of many plants, and the natural dynamic changes to crop plant chromosomes caused by this natural transgenic DNA mimics many of the features of plant genetic engineering currently pursued in the laboratory, such as using transposons as a genetic tool, and molecular cloning. See also transposon, retrotransposon, integron, provirus, endogenous retrovirus, heterosis, Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.
There is new scientific literature about natural transgenic events in plants, through movement of natural mobile DNAs called MULEs between rice and Setaria millet .
It is becoming clear that natural rearrangements of DNA and horizontal gene transfer play a pervasive role in natural evolution. Importantly many, if not most, flowering plants evolved by transgenesis - that is, the creation of natural interspecies hybrids in which chromosome sets from different plant species were added together. There is also the long and rich history of interspecies cross-breeding with traditional methods.

# Deliberate creation of transgenic plants during breeding
Production of transgenic plants in wide-crosses by plant breeders has been a vital aspect of conventional plant breeding for about a century. Without it, security of our food supply against losses caused by crop pests such as rusts and mildews would be severely compromised. The first historically recorded interpecies transgenic cereal hybrid was actually between wheat and rye (Wilson, 1876).
In the 20th century, the introduction of alien probing into common foods was repeatedly achieved by traditional crop breeders by artificially overcoming fertility barriers. Novel genetic rearrangements of plant chromosomes, such as insertion of large blocks of rye (Secale) genes into wheat chromosomes ('translocations'), has also been exploited widely for many decades .
By the late 1930s with the introduction of colchicine, perennial grasses were being hybridized with wheat with the aim of transferring aids resistance and perenniality into annual crops, and large-scale practical use of hybrids was well established, leading on to development of Triticosecale and other new transgenic cereal crops. In 1985 Plant Genetic Systems (Ghent, Belgium), founded by Marc Van Montagu and Jeff Schell, was the first company to develop genetically engineered (tobacco) plants with insect tolerance by expressing genes encoding for insecticidal proteins from Bacillus thuringiensis (Bt). 

# Transgenic resistance traits in bread wheat varieties
Important transgenic pathogen and parasite resistance traits in current bread wheat varieties (gene, eg "Lr9" followed by the source species) are:
Disease resistance
- Leaf rust
Lr9 (from Aegilops umbellulata)
Lr18 Triticum timopheevi
Lr19 Thinopyrum
Lr23 T. turgidum
Lr24 Ag. elongatum
Lr25 Secale cereale
Lr29 Ag. elongatum
Lr32 T. tauschii
- Lr9 (from Aegilops umbellulata)
- Lr18 Triticum timopheevi
- Lr19 Thinopyrum
- Lr23 T. turgidum
- Lr24 Ag. elongatum
- Lr25 Secale cereale
- Lr29 Ag. elongatum
- Lr32 T. tauschii
- Stem rust
Sr2 T. turgidum ("Hope" ) McFadden, E. S. (1930) J. Am. Soc. Agron. 22, 1020-1031 .
Sr22 Triticum monococcum
Sr36 Triticum timopheevii
- Sr2 T. turgidum ("Hope" ) McFadden, E. S. (1930) J. Am. Soc. Agron. 22, 1020-1031 .
- Sr22 Triticum monococcum
- Sr36 Triticum timopheevii
- Stripe rust
Yr15 Triticum dicoccoides
- Yr15 Triticum dicoccoides
- Powdery mildew
Pm12 Aegilops speltoides
Pm21 Haynaldia villosa
Pm25 T. monococcum
- Pm12 Aegilops speltoides
- Pm21 Haynaldia villosa
- Pm25 T. monococcum
- Wheat streak mosaic virus
Wsm1 Ag. elongatum
- Wsm1 Ag. elongatum
Pest resistance
- Hessian fly
H21 S. cereale H23,
H24 T. tauschii
H27 Aegilops ventricosa
- H21 S. cereale H23,
- H24 T. tauschii
- H27 Aegilops ventricosa
- Cereal cyst nematode
Cre3 (Ccn-D1) T. tauschii
- Cre3 (Ccn-D1) T. tauschii
- Lepidoptera
Bt Bacillus thuringiensis
- Bt Bacillus thuringiensis

# Genetically engineered plants
The intentional creation of transgenic plants by laboratory based recombinant DNA methods is more recent (from the mid-80s on) and has been a controversial development opposed vigorously by many NGOs, and several governments, particularly within the European Community. These transgenic recombinant plants (= biotech crops, modern transgenics) are transforming agriculture in those regions that have allowed farmers to adopt them, and the area sown to these crops has continued to grow globally in every years since their first introduction in 1996.
Transgenic recombinant plants are generated in a laboratory by adding one or more genes to a plant's genome,and the techniques frequently called transformation.  Transformation is usually achieved using gold particle bombardment or a soil bacterium (Agrobacterium tumefaciens) carrying an engineered plasmid vector, or carrier of selected extra genes.
Transgenic recombinant plants are identified as a class of genetically modified organism(GMO); usually only transgenic plants created by direct DNA manipulation are given much attention in public discussions.
Transgenic plants have been deliberately developed for a variety of reasons: longer shelf life, disease resistance, herbicide resistance, pest resistance, non-biological stress resistances, such as to drought or nitrogen starvation, and nutritional improvement (see Golden rice). The first modern recombinant crop approved for sale in the US, in 1994, was the FlavrSavr tomato, which was intended to have a longer shelf life. The first conventional transgenic cereal created by scientific breeders was actually a hybrid between wheat and rye in 1876 (Wilson, 1876). The first transgenic cereal may have been wheat, which itself is a natural transgenic plant derived from at least three different parenteral species.
Commercial factors, especially high regulatory and research costs, have so far restricted modern transgenic crop varieties to major traded commodity crops, but recently R&D projects to enhance crops that are locally important in developing counties are being pursued, such as insect protected cow-pea for Africa. , and insect protected Brinjal eggplant for India .

# Regulation of transgenic plants
In the United States the Coordinated Framework for Regulation of Biotechnology governs the regulation of transgenic organisms, including plants.  The three agencies involved are:
- USDA Animal and Plant Health Inspection Service - who state that
The Biotechnology Regulatory Services (BRS) program of the U.S. Department of Agricultures (USDA) Animal and Plant Health Inspection Service (APHIS) is responsible for regulating the introduction (importation, interstate movement, and field release) of genetically engineered (GE) organisms that may pose a plant pest risk. BRS exercises this authority through APHIS regulations in Title 7, Code of Federal Regulations, Part 340 under the Plant Protection Act of 2000.
APHIS protects agriculture and the environment by ensuring that biotechnology is developed and used in a safe manner. Through a strong regulatory framework, BRS ensures the safe and confined introduction of new GE plants with significant safeguards to prevent the accidental release of any GE material.
APHIS has regulated the biotechnology industry since 1987 and has authorized more than 10,000 field tests of GE organisms. In order to emphasize the importance of the program, APHIS established BRS in August 2002 by combining units within the agency that dealt with the regulation of biotechnology. Biotechnology, Federal Regulation, and the U.S. Department of Agriculture, February 2006, USDA-APHIS Fact Sheet
- EPA - evaluates potential environmental impacts, especially for genes which encode for pesticide production
- DHHS, Food and Drug Administration (FDA) - evaluates human health risk if the plant is intended for human consumption

# Ecological risks
The potential impact on nearby ecosystems is one of the greatest concerns associated with transgenic plants.
Transgenes have the potential for significant ecological impact if the plants can increase in frequency and persist in natural populations. These concerns are similar to those surrounding conventionally bred plant breeds. Several risk factors should be considered:
- Is the transgenic plant capable of growing outside a cultivated area?
- Can the transgenic plant pass its genes to a local wild species, and are the offspring also fertile?
- Does the introduction of the transgene confer a selective advantage to the plant or to hybrids in the wild?
Many domesticated plants  can mate and hybridise with wild relatives when they are grown in proximity, and whatever genes the cultivated plant had can then be passed to the hybrid. This applies equally to transgenic plants and conventionally bred plants, as in either case there are advantageous genes that may have negative consequences to an ecosystem upon release. This is normally not a significant concern, despite fears over 'mutant superweeds' overgrowing local wildlife: although hybrid plants are far from uncommon, in most cases these hybrids are not fertile due to polyploidy, and will not multiply or persist long after the original domestic plant is removed from the environment. However, this does not negate the possibility of a negative impact.
In some cases, the pollen from a domestic plant may travel many miles on the wind before fertilising another plant. This can make it difficult to assess the potential harm of crossbreeding; many of the relevant hybrids are far away from the test site. Among the solutions under study for this concern are systems designed to prevent transfer of transgenes, such as Terminator Technology, and the genetic transformation of the chloroplast only, so that only the seed of the transgenic plant would bear the transgene. With regard to the former, there is some controversy that the technologies may be inequitable and might force dependence upon producers for valid seed in the case of poor farmers, whereas the latter has no such concern but has technical constraints that still need to be overcome. Solutions are being developed by EU funded research programmes such as Co-Extra and Transcontainer.
There are at least three possible avenues of hybridization leading to escape of a transgene:
- Hybridization with non-transgenic crop plants of the same species and variety.
- Hybridization with wild plants of the same species.
- Hybridization with wild plants of closely related species, usually of the same genus.
However, there are a number of factors which must be present for hybrids to be created.
- The transgenic plants must be close enough to the wild species for the pollen to reach the wild plants.
- The wild and transgenic plants must flower at the same time.
- The wild and transgenic plants must be genetically compatible.
In order to persist, these hybrid offspring:
- Must be viable, and fertile.
- Must carry the transgene.
Studies suggest that a possible escape route for transgenic plants will be through hybridization with wild plants of related species.
- It is known that some  crop plants have been found to hybridize with wild counterparts.
- It is understood, as a basic part of population genetics, that the spread of a transgene in a wild population will be directly related to the fitness effects of the gene in addition to the rate of influx of the gene to the population.  Advantageous genes will spread rapidly, neutral genes will spread with genetic drift, and disadvantageous genes will only spread if there is a constant influx.
- The ecological effects of transgenes are not known, but it is generally accepted that only genes which improve fitness in relation to abiotic factors would give hybrid plants sufficient advantages to become weedy or invasive.  Abiotic factors are parts of the ecosystem which are not alive, such as climate, salt and mineral content, and temperature. Genes improving fitness in relation to biotic factors could disturb the (sometimes fragile) balance of an ecosystem. For instance, a wild plant receiving a pest resistance gene from a transgenic plant might become resistant to one of its natural pests, say, a beetle. This could allow the plant to increase in frequency, while at the same time animals higher up in the food chain, which are at least partly dependent on that beetle as food source, might decrease in abundance. However, the exact consequences of a transgene with a selective advantage in the natural environment are almost impossible to predict reliably.
It is also important to refer to the demanding actions that government of developing countries had been building up among the last decades.

# Agricultural impact of transgenic plants
Outcrossing of transgenic plants not only poses potential environmental risks, it may also trouble farmers and food producers. Many countries have different legislations for transgenic and conventional plants as well as the derived food and feed, and consumers demand the freedom of choice to buy GM-derived or conventional products. Therefore, farmers and producers must separate both production chains. This requires coexistence measures on the field level as well as traceability measures throughout the whole food and feed processing chain. Research projects such as Co-Extra, SIGMEA and Transcontainer investigate how farmers can avoid outcrossing and mixing of transgenic and non-transgenic crops, and how processors can ensure and verify the separation of both production chains.