Mycobacterium

# Overview
Mycobacterium is a genus of Actinobacteria, given its own family, the Mycobacteriaceae.  The genus includes pathogens known to cause serious diseases in mammals, including tuberculosis and leprosy. The Latin prefix "myco" means both fungus and wax; its use here relates to the "waxy" compounds in the cell wall.

# Microbiologic characteristics
Mycobacteria are aerobic and nonmotile bacteria (except for the species Mycobacterium marinum which has been shown to be motile within macrophages) that are characteristically acid-alcohol fast.  Mycobacteria do not contain endospores or capsules, and are usually considered Gram-positive. While mycobacteria do not seem to fit the Gram-positive category from an empirical standpoint (i.e. they do not retain the crystal violet stain), they are classified as an acid-fast Gram-positive bacterium due to their lack of an outer cell membrane. All Mycobacterium species share a characteristic cell wall, thicker than in many other bacteria, which is hydrophobic, waxy, and rich in mycolic acids/mycolates. The cell wall makes a substantial contribution to the hardiness of this genus.
Many Mycobacterium species adapt readily to growth on very simple subtrates, using ammonia or amino acids as nitrogen sources and glycerol as a carbon source in the presence of mineral salts.  Optimum growth temperatures vary widely according to the species and range from 25 C to over 50 C.
Some species can be very difficult to culture (i.e. they are fastidious), sometimes taking over two years to develop in culture. Further, some species also have extremely long reproductive cycles  M. leprae, may take more than 20 days to proceed through one division cycle (for comparison, some E. coli strains take only 20 minutes), making laboratory culture a slow process.
A natural division occurs between slowly and rapidlygrowing species.  Mycobacteria that form colonies clearly visible to the naked eye within 7 days on subculture are termed rapid growers, while those requiring longer periods are termed slow growers. Mycobacteria are slightly curved or straight rods between 0.2-0.6 m wide by 1.0-10 m long.

## Pigmentation
Some mycobacteria produce carotenoid pigments without light.  Others require photoactivation for pigment production.  Photochromogens produce nonpigmented colonies when grown in the dark and pigmented colonies only after exposure to light and reincubation.  Scotochromogens produce deep yellow to orange colonies when grown in either the light or dark.  Nonphotochromogens are nonpigmented in the light and dark or have only a pale yellow, buff or tan pigment that does not intensify after light exposure.

## Staining characteristics
Mycobacteria are classical acid-fast organisms.  Stains used in evaluation of tissue specimens or microbiological specimens include Fite's stain, Ziehl-Neelsen stain, and Kinyoun stain.
Mycobacteria appear phenotypically most closely related to members of Nocardia, Rhodococcus and Corynebacterium.

# Ecological characteristics
Mycobacteria are widespread organisms, typically living in water (including tap water treated with chlorine) and food sources. Some, however, including the tuberculosis and the leprosy organisms, appear to be obligate parasites and are not found as free-living members of the genus.

# Pathogenicity
Mycobacteria can colonize their hosts without the hosts showing any adverse signs.   For example, billions of people around the world are infected with M. tuberculosis but will never know it because they will not develop symptoms.
Mycobacterial infections are notoriously difficult to treat.  The organisms are hardy due to their cell wall, which is neither truly Gram negative nor positive, and unique to the family, they are naturally resistant to a number of antibiotics that work by destroying cell walls, such as penicillin. Also, because of this cell wall, they can survive long exposure to acids, alkalis, detergents, oxidative bursts, lysis by complement and antibiotics which naturally leads to antibiotic resistance. Most mycobacteria are susceptible to the antibiotics clarithromycin and rifamycin, but antibiotic-resistant strains are known to exist.

## Medical classification
Mycobacteria can be classified into several major groups for purpose of diagnosis and treatment: M. tuberculosis complex which can cause tuberculosis: M. tuberculosis, M. bovis, M. africanum, and M. microti; M. leprae which causes Hansen's disease or leprosy; Nontuberculous mycobacteria (NTM) are all the other mycobacteria which can cause pulmonary disease resembling tuberculosis, lymphadenitis, skin disease, or disseminated disease.

# Phenotypic testing
Various phenotypic tests can be used to indentify and distinguish different Mycobacteria species and strains.
Phenotypic testing of Mycobacteria

# Mycosides
Mycosides are phenolic alcohols (such as phenolphthiocerol) that were shown to be components of mycobacterium glycolipids which are termed glycosides of phenolphthiocerol dimycocerosate (Smith DW et al., Nature 1960, 186, 887)  There are 18 and 20 carbon atoms in mycosides A, and B, respectively.

# Species
- M. abscessus
- M. africanum
- M. agri
- M. aichiense
- M. alvei
- M. arupense
- M. asiaticum
- M. aubagnense
- M. aurum
- M. austroafricanum
- Mycobacterium avium complex (MAC), is a group of species which are a significant cause of death in AIDS patients.  Species in this complex include:
M. avium
M. avium paratuberculosis, which has been implicated in Crohn's disease in humans and Johne's disease in sheep
M. avium silvaticum
M. avium "hominissuis"
- M. boenickei
- M. bohemicum
- M. bolletii
- M. botniense
- M. bovis
- M. branderi
- M. brisbanense
- M. brumae
- M. canariasense
- M. caprae
- M. celatum
- M. chelonae,
- M. chimaera
- M. chitae
- M. chlorophenolicum
- M. chubuense
- M. colombiense
- M. conceptionense
- M. confluentis
- M. conspicuum
- M. cookii
- M. cosmeticum
- M. diernhoferi
- M. doricum
- M. duvalii
- M. elephantis
- M. fallax
- M. farcinogenes
- M. flavescens
- M. florentinum
- M. fluoroanthenivorans
- M. fortuitum
- M. fortuitum subsp. acetamidolyticum
- M. frederiksbergense
- M. gadium
- M. gastri
- M. genavense
- M. gilvum
- M. goodii
- M. gordonae
- M. haemophilum
- M. hassiacum
- M. heckeshornense
- M. heidelbergense
- M. hiberniae
- M. hodleri
- M. holsaticum
- M. houstonense
- M. immunogen
- M. interjectum
- M. intermedium
- M. intracellulare
- M. kansasii
- M. komossense
- M. kubicae
- M. kumamotonense
- M. lacus
- M. lentiflavum
- M. leprae, which causes leprosy
- M. lepraemurium
- M. madagascariense
- M. mageritense
- M. malmoense
- M. marinum
- M. massiliense
- M. microti
- M. monacense
- M. montefiorense
- M. moriokaense
- M. mucogenicum
- M. murale
- M. nebraskense
- M. neoaurum
- M. neworleansense
- M. nonchromogenicum
- M. novocastrense
- M. obuense
- M. palustre
- M. parafortuitum
- M. parascrofulaceum
- M. parmense
- M. peregrinum
- M. phlei
- M. phocaicum
- M. pinnipedii
- M. porcinum
- M. poriferae
- M. pseudoshottsii
- M. pulveris
- M. psychrotolerans
- M. pyrenivorans
- M. rhodesiae
- M. saskatchewanense
- M. scrofulaceum
- M. senegalense
- M. seoulense
- M. septicum
- M. shimoidei
- M. shottsii
- M. simiae
- M. smegmatis
- M. sphagni
- M. szulgai
- M. terrae
- M. thermoresistibile
- M. tokaiense
- M. triplex
- M. triviale
- Mycobacterium tuberculosis complex (MTBC),members are causative agents of human and animal tuberculosis.  Species in this complex include:
M. tuberculosis, the major cause of human tuberculosis
M. bovis
M. bovis BCG
M. africanum
M. canetti
M. caprae
M. pinnipedii'
- M. tusciae
- M. ulcerans, which causes the "Buruli", or "Bairnsdale, ulcer"
- M. vaccae
- M. vanbaalenii
- M. wolinskyi
- M. xenopi