Staphylococcus

# Overview
Staphylococcus (from the Template:Lang-el, staphyle, "grape" and , kokkos, "granule") is a genus of Gram-positive bacteria. Under the microscope, they appear round (cocci), and form in grape-like clusters.
The Staphylococcus genus includes at least 40 species. Of these, nine have two subspecies and one has three subspecies. Most are harmless and reside normally on the skin and mucous membranes of humans and other organisms. Found worldwide, they are a small component of soil microbial flora.

# Taxonomy
The taxonomy is based on 16s rRNA sequences, and most of the staphylococcal species fall into 11 clusters:
- S. aureus group  S. aureus, S. simiae
- S. auricularis group  S. auricularis
- S. carnosus group  S. carnosus, S. condimenti, S. massiliensis, S. piscifermentans, S. simulans
- S. epidermidis group  S. capitis, S. caprae, S. epidermidis, S. saccharolyticus
- S. haemolyticus group  S. devriesei, S. haemolyticus, S. hominis
- S. hyicus-intermedius group  S. chromogenes, S. felis, S. delphini, S. hyicus, S. intermedius, S. lutrae, S. microti, S. muscae, S. pseudintermedius, S. rostri, S. schleiferi
- S. lugdunensis group  S. lugdunensis
- S. saprophyticus group  S. arlettae, S. cohnii, S. equorum, S. gallinarum, S. kloosii, S. leei, S. nepalensis, S. saprophyticus, S. succinus, S. xylosus
- S. sciuri group  S. fleurettii, S. lentus, S. sciuri, S. stepanovicii, S. vitulinus
- S. simulans group  S. simulans
- S. warneri group  S. pasteuri, S. warneri
A twelfth group  that of S. caseolyticus  has now been moved to a new genus Macrococcus, the species of which are currently the closest known relatives of the Staphylococci.

## Subspecies
S. aureus subsp. aureus
S. aureus subsp. anaerobius
S. capitis subsp. capitis
S. capitis subsp. urealyticus
S. carnosus subsp. carnosus
S. carnosus subsp. utilis
S. cohnii subsp. cohnii
S. cohnii subsp. urealyticus
S. equorum subsp. equorum 
S. equorum subsp. linens
S. hominis subsp. hominis
S. hominis subsp. novobiosepticus
S. saprophyticus subsp. bovis
S. saprophyticus subsp. saprophyticus
S. schleiferi subsp. coagulans
S. schleiferi subsp. schleiferi
S. sciuri subsp. carnaticus 
S. sciuri subsp. rodentium
S. sciuri subsp. sciuri
S. succinus subsp. casei
S. succinus subsp. succinus

## Notes
As with all generic names in binomial nomenclature, Staphylococcus is capitalized when used alone or with a specific species. Also, the abbreviations Staph and S. when used with a species (S. aureus) are correctly italicized and capitalized (though often errors in this are seen in popular literature). However, Staphylococcus is not capitalized or italicized when used in adjectival forms, as in a staphylococcal infection, or as the plural (staphylococci).
The S. saprophyticus and S. sciuri groups are generally novobiocin-resistant, as is S. hominis subsp. novobiosepticus.
Members of the S. sciuri group are oxidase-positive due to their possession of the enzyme cytochrome c oxidase. This group is the only clade within the Staphylococci to possess this gene.
The S. sciuri group appears to be the closest relations to the genus Macrococcus.
Staphylococcus pulvereri has been shown to be a junior synonym of Staphylococcus vitulinus.
Within these clades, the S. haemolyticus and S. simulans groups appear to be related, as do the S. aureus and S. epidermidis groups.
S. lugdunensis appears to be related to the S. haemolyticus group.
S. croceolyticus may be related to S. haemolyticus, but this needs to be confirmed.
The taxonomic position of S. croceolyticus, S. leei, S. lyticans and S. pseudolugdunensis has yet to be clarified. The published descriptions of these species do not appear to have been validly published to date (2010).

# Biochemical identification
Assignment of a strain to the genus Staphylococcus requires it to be a Gram-positive coccus that forms clusters, produces catalase, has an appropriate cell wall structure (including peptidoglycan type and teichoic acid presence) and G + C content of DNA in a range of 3040 mol%.
Staphylococcus species can be differentiated from other aerobic and facultative anaerobic, Gram-positive cocci by several simple tests. Staphylococcus spp. are facultative anaerobes (capable of growth both aerobically and anaerobically).  All species grow in the presence of bile salts.
It was believed that all species were coagulase-positive however it is now known that not all Staphylococcus are coagulase positive.
Growth can also occur in a 6.5% NaCl solution. On Baird Parker medium, Staphylococcus spp. grow fermentatively, except for S. saprophyticus, which grows oxidatively. Staphylococcus spp. are resistant to bacitracin (0.04 U disc: resistance = < 10 mm zone of inhibition) and susceptible to furazolidone (100 g disc: resistance = < 15 mm zone of inhibition). Further biochemical testing is needed to identify to the species level.
When the bacterium divides it divides along two axes, so forming clumps of bacteria. This is as opposed to streptococci which divide along one axis and so form chains (strep. meaning twisted or pliant).

## Coagulase production
One of the most important phenotypical features used in the classification of staphylococci is their ability to produce coagulase, an enzyme that causes blood clot formation.
Six species are currently recognised as being coagulase-positive: S. aureus, S. delphini, S. hyicus, S. intermedius, S. lutrae,S. pseudintermedius and S. schleiferi subsp. coagulans. These species belong to two separate groups  the S. aureus (S. aureus alone) group and the S. hyicus-intermedius group (the remaining five). S. aureus can also be found as being coagulase-negative.
A seventh species has also been described  Staphylococcus leei  from patients with gastritis.
S. aureus is coagulase-positive, meaning it produces coagulase. However, while the majority of S. aureus strains are coagulase-positive, some may be atypical in that they do not produce coagulase. S. aureus is catalase-positive (meaning that it can produce the enzyme catalase) and able to convert hydrogen peroxide (H2O2) to water and oxygen, which makes the catalase test useful to distinguish staphylococci from enterococci and streptococci.
S. pseudintermedius inhabits and sometimes infects the skin of domestic dogs and cats. This organism, too, can carry the genetic material that imparts multiple bacterial resistance. It is rarely implicated in infections in humans, as a zoonosis.

### Coagulase-Negative Staphylococcus
S. epidermidis, a coagulase-negative species, is a commensal of the skin, but can cause severe infections in immune-suppressed patients and those with central venous catheters.
S. saprophyticus, another coagulase-negative species that is part of the normal vaginal flora, is predominantly implicated in genitourinary tract infections in sexually active young women.
In recent years, several other Staphylococcus species have been implicated in human infections, notably S. lugdunensis, S. schleiferi, and S. caprae.
- Staphylococcus epidermidis
- Staphylococcus haemolyticus
- Staphylococcus lugdunensis
- Staphylococcus saprophyticus
- Staphylococcus auricularis
- Staphylococcus capitis
- Staphylococcus caprae
- Staphylococcus carnosus
- Staphylococcus cohnii
- Staphylococcus hominis
- Staphylococcus pasteuri
- Staphylococcus pettenkoferi
- Staphylococcus pulvereri
- Staphylococcus saccharolyticus
- Staphylococcus simulans
- Staphylococcus schleiferi
- Staphylococcus warneri
- Staphylococcus xylosus

# Genomics and molecular biology
The first S. aureus genomes to be sequenced were those of N315 and Mu50 in 2001. Many more complete S. aureus genomes have been submitted to the public databases, making it one of the most extensively sequenced bacteria. The use of genomic data is now widespread and provides a valuable resource for researchers working with S. aureus. Whole genome technologies, such as sequencing projects and microarrays, have shown an enormous variety of S. aureus strains. Each contains different combinations of surface proteins and different toxins. Relating this information to pathogenic behaviour is one of the major areas of staphylococcal research. The development of molecular typing methods has enabled the tracking of different strains of S. aureus. This may lead to better control of outbreak strains. A greater understanding of how the staphylococci evolve, especially due to the acquisition of mobile genetic elements encoding resistance and virulence genes is helping to identify new outbreak strains and may even prevent their emergence.
The widespread incidence of antibiotic resistance across various strains of S. aureus, or across different species of Staphylococcus has been attributed to horizontal gene transfer of genes encoding antibiotic/metal resistance and virulence. A recent study demonstrated the extent of horizontal gene transfer among Staphylococcus to be much greater than previously expected, and encompasses genes with functions beyond antibiotic resistance and virulence, and beyond genes residing within the mobile genetic elements.
Various strains of Staphylococcus are available from biological research centres, such as the National Collection of Type Cultures (NCTC).

# Host range
Members of the genus Staphylococcus frequently colonize the skin and upper respiratory tracts of mammals and birds. Some species specificity has been observed in host range, such that the Staphylococcus species observed on some animals appear more rarely on more distantly related host species.
Some of the observed host specificity includes:
S. arlattae  chickens, goats
S. auricularis  deer, dogs, humans 
S. capitis  humans
S. caprae  goats, humans
S. cohnii  chickens, humans
S. delphini  dolphins
S. devriesei  cattle
S. epidermiditis  humans
S. equorum  horses
S. felis  cats
S. fleurettii  goats
S. gallinarum  chickens, goats, pheasants 
S. haemolyticus  humans, Cercocebus, Erythrocebus, Lemur, Macca, Microcebus, Pan
S. hyicus  pigs
S. leei  humans
S. lentus  goats, rabbits, sheep
S. lugdunensis  humans, goats
S. lutrae  otters
S. microti  voles (Microtus arvalis)
S. nepalensis  goats
S. pasteuri  humans, goats
S. pettenkoferi  humans
S. pseudintermedius  dogs
S. rostri  pigs
S. schleiferi  humans
S. sciuri  humans, dogs, goats
S. simiae  South American squirrel monkeys (Saimiri sciureus)
S. simulans  humans
S. warneri  humans, Cercopithecoidea, Pongidae
S. xylosus  humans

# Clinical
Staphylococcus can cause a wide variety of diseases in humans and animals through either toxin production or penetration. Staphylococcal toxins are a common cause of food poisoning, as they can be produced by bacteria growing in improperly stored food items. 
The most common sialadenitis is caused by staphylococci, as bacterial infections.