Cat8p gene transcriptions

# Human genes

# Interactions

# Consensus sequences
The upstream activating sequence (UAS) for Cat8p is 5'-CGGNBNVMHGGA-3', where N = A, C, G, T, B = C, G, T, V = A, C, G, M = A, C, and H = A, C, T; i.e. 5'-CGG(A/C/G/T)(C/G/T)(A/C/G/T)(A/C/G)(A/C)(A/C/T)GGA-3'.

# Hypotheses
- A1BG has no Cat8ps in either promoter.
- A1BG is not transcribed by a Cat8p.
- Cat8p does not participate in the transcription of A1BG.

# Cat8p samplings
Copying CGGTCCGC in "F" yields none between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.
For the Basic programs testing consensus sequence CGG(A/C/G/T)(C/G/T)(A/C/G/T)(A/C/G)(A/C)(A/C/T)GGA (starting with SuccessablesCat8p.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
- negative strand, negative direction, looking for CGG(A/C/G/T)(C/G/T)(A/C/G/T)(A/C/G)(A/C)(A/C/T)GGA: 0.
- negative strand, positive direction, looking for CGG(A/C/G/T)(C/G/T)(A/C/G/T)(A/C/G)(A/C)(A/C/T)GGA: 0.
- positive strand, negative direction, looking for CGG(A/C/G/T)(C/G/T)(A/C/G/T)(A/C/G)(A/C)(A/C/T)GGA: 0.
- positive strand, positive direction, looking for CGG(A/C/G/T)(C/G/T)(A/C/G/T)(A/C/G)(A/C)(A/C/T)GGA: 0.
- inverse complement, negative strand, negative direction: 2, TCCGTGCCACCG at 2528, TCCGTGCCACCG at 657.
- inverse complement, negative strand, positive direction: 0.
- inverse complement, positive strand, negative direction: 0.
- inverse complement, positive strand, positive direction: 0.

## Cat8 negative direction (2596-1) distal promoters
- Negative strand, negative direction: 2, TCCGTGCCACCG at 2528, TCCGTGCCACCG at 657.

# Cat8 random dataset samplings
- Cat8r0: 0.
- Cat8r1: 1, CGGGTTGATGGA at 1079.
- Cat8r2: 0.
- Cat8r3: 0.
- Cat8r4: 0.
- Cat8r5: 1, CGGCTCAACGGA at 575.
- Cat8r6: 1, CGGGCCAATGGA at 743.
- Cat8r7: 0.
- Cat8r8: 0.
- Cat8r9: 0.
- Cat8r0ci: 0.
- Cat8r1ci: 0.
- Cat8r2ci: 1, TCCTGTACACCG at 1210.
- Cat8r3ci: 0.
- Cat8r4ci: 1, TCCTGGGCGCCG at 2629.
- Cat8r5ci: 0.
- Cat8r6ci: 1, TCCAGTTGTCCG at 2642.
- Cat8r7ci: 1, TCCATCCGGCCG at 1909.
- Cat8r8ci: 1, TCCTGTTGCCCG at 3455.
- Cat8r9ci: 0.

## Cat8r arbitrary (evens) (4560-2846) UTRs
- Cat8r8ci: TCCTGTTGCCCG at 3455.

## Cat8r arbitrary negative direction (evens) (2811-2596) proximal promoters
- Cat8r4ci: TCCTGGGCGCCG at 2629.
- Cat8r6ci: TCCAGTTGTCCG at 2642.

## Cat8r arbitrary negative direction (evens) (2596-1) distal promoters
- Cat8r6: CGGGCCAATGGA at 743.
- Cat8r2ci: TCCTGTACACCG at 1210.

## Cat8r alternate negative direction (odds) (2596-1) distal promoters
- Cat8r1: CGGGTTGATGGA at 1079.
- Cat8r5: CGGCTCAACGGA at 575.
- Cat8r7ci: TCCATCCGGCCG at 1909.

## Cat8r arbitrary positive direction (odds) (4050-1) distal promoters
- Cat8r1: CGGGTTGATGGA at 1079.
- Cat8r5: CGGCTCAACGGA at 575.
- Cat8r7ci: TCCATCCGGCCG at 1909.

## Cat8r alternate positive direction (evens) (4050-1) distal promoters
- Cat8r6: CGGGCCAATGGA at 743.
- Cat8r2ci: TCCTGTACACCG at 1210.
- Cat8r4ci: TCCTGGGCGCCG at 2629.
- Cat8r6ci: TCCAGTTGTCCG at 2642.
- Cat8r8ci: TCCTGTTGCCCG at 3455.

# Cat8 analysis and results
The upstream activating sequence (UAS) for Cat8p is 5'-CGGNBNVMHGGA-3', where N = A, C, G, T, B = C, G, T, V = A, C, G, M = A, C, and H = A, C, T; i.e. 5'-CGG(A/C/G/T)(C/G/T)(A/C/G/T)(A/C/G)(A/C)(A/C/T)GGA-3'.
Comparison:
The occurrences of real Cat8s are greater than the randoms. This suggests that the real Cat8s are likely active or activable.

# Acknowledgements
The content on this page was first contributed by: Henry A. Hoff.