Hippocampus anatomy
The hippocampus is a neural structure in the medial temporal lobe. It has a distinctive, curved, shape that has been likened to the sea horse monster of Greek mythology and the ram's horns of Amun in Egyptian mythology. This general layout holds across the full range of mammalian species, from hedgehog to human, although the details vary. For example, in the rat, the two hippocampi look similar to pair of bananas, joined at the stems.  In primate brains, including humans, the portion of the hippocampus near the base of the temporal lobe is much broader than the part at the top. Due to the three-dimensional curvature of this structure, two-dimensional sections such as are commonly seen in preserved specimens or neuroimaging pictures can show a number of different shapes, depending on the angle and location of the cut.
Topologically, one can think of the surface of a cerebral hemisphere as a sphere with an indentation where it attaches to the midbrain. The structures that line the edge of the hole collectively make up the so-called limbic system (Latin limbus =
border), with the hippocampus lining the posterior edge of this hole. These limbic include the hippocampus, cingulate cortex, olfactory cortex, and amygdala. Paul MacLean once suggested, as part of his triune brain theory, that the limbic structures comprise the neural basis of emotion.  While most neuroscientists no longer believe in the concept of a unified "limbic system", these regions are highly interconnected and do interact with one another.

# Basic Hippocampal Circuit
Starting at the dentate gyrus and working inward along the S-curve of the hippocampus means traversing a
series of narrow zones.  The first of these, the dentate gyrus (DG), is actually a separate
structure, a tightly packed layer of small granule cells wrapped around the end of the hippocampus
proper, forming a pointed wedge in some cross-sections, a semicircle in others. Next
come a series of Cornu Ammonis areas:  first CA4 (which underlies the dentate gyrus), then CA3, then
a very small zone called CA2, then CA1.  The CA areas are all filled with densely packed pyramidal cells resembling those of the cortex.  After CA1 comes an area called the subiculum.  After this come a pair of ill-defined areas called the presubiculum and parasubiculum, then a
transition to the cortex proper (mostly the entorhinal area of the cortex).  Most anatomists
use the term "hippocampus proper" to refer to the four CA fields, and "hippocampal formation"
to refer to the hippocampus proper plus dentate gyrus and subiculum.
The major pathways of signal flow through the hippocampus combine to form a loop.  Most external input comes from the adjoining entorhinal cortex, via the axons of the so-called perforant path.  These axons arise from layer 2 of the EC, and terminate in the dentate gyrus and CA3.  There is also a distinct pathway from layer 3 of the EC directly to CA1.  Granule cells of the DG send their axons (called "mossy fibers") to CA3.  Pyramidal cells of CA3 send their axons to CA1.  Pyramidal cells of CA1 send their axons to the subiculum and deep layers of the EC.  Subicular neurons send their axons mainly to the EC. The perforant path-to-dentate gyrus-to-CA3-to-CA1 was called the trisynaptic circuit by Per Andersen, who noted that thin slices could be cut out of the hippocampus perpendicular to its long axis, in a way that preserves all of these connections.  This observation was the basis of his lamellar hypothesis, which proposed that the hippocampus can be thought of as a series of parallel strips, operating in a functionally independent way..  The lamellar concept is still sometimes considered to be a useful organizing principle, but more recent data, showing extensive longitudinal connections within the hippocampal system, have required it to be substantially modified.
Perforant path input from EC layer II enters the dentate gyrus and is relayed to region CA3 (and to mossy cells, located in the hilus of the dentate gyrus, which then send information to distant portions of the dentate gyrus where the cycle is repeated). Region CA3 combines this input with signals from EC layer II and sends extensive connections within the region and also sends connections to region CA1 through a set of fibers called the Schaffer collaterals. Region CA1 receives input from the CA3 subfield, EC layer III and the nucleus reuniens of the thalamus (which project only to the terminal apical dendritic tufts in the stratum lacunosum-moleculare). In turn, CA1 projects to the subiculum as well as sending information along the aforementioned output paths of the hippocampus. The subiculum is the final stage in the pathway, combining information from the CA1 projection and EC layer III to also send information along the output pathways of the hippocampus.
The hippocampus also receives a number of subcortical inputs. In Macaca fascicularis, these inputs include the amygdala (specifically the anterior amygdaloid area, the basolateral nucleus, and the periamygdaloid cortex), the medial septum and the diagonal band of Broca, the claustrum, the substantia innominata and the basal nucleus of Meynert, the thalamus (including the anterior nuclear complex, the laterodorsal nucleus, the paraventricular and parataenial nuclei, the nucleus reuniens, and the nucleus centralis medialis), the lateral preoptic and lateral hypothalamic areas, the supramammillary and retromammillary regions, the ventral tegmental area, the tegmental reticular fields, the raphe nuclei (the nucleus centralis superior and the dorsal raphe nucleus), the nucleus reticularis tegementi pontis, the central gray, the dorsal tegmental nucleus, and the locus coeruleus.
The hippocampus also receives direct monosynaptic projections from the cerebellar fastigial nucleus (Heath and Harper 1974).

# Hippocampal Cells and Layers
The hippocampus is composed of multiple subfields. Though terminology varies among authors, the terms most frequently used are dentate gyrus and the cornu ammonis (literally "Amun's horns", abbreviated CA). The dentate gyrus contains the fascia dentata and the hilus, while CA is differentiated into fields CA1, CA2, and CA3.
Cut in cross section, the hippocampus is a C-shaped structure that resembles a ram's horns. The name cornu ammonis refers to the Egyptian deity Amun, who has the head of a ram. The horned appearance of the hippocampus is caused by cell density differentials and the existence of varying degrees of neuronal fibers.
In rodents, the hippocampus is positioned so that, roughly, one end is near the top of the head (the dorsal or septal end) and one end near the bottom of the head (the ventral or temporal end). As shown in the figure, the structure itself is curved and subfields or regions are defined along the curve, from CA4 through CA1 (only CA3 and CA1 are labeled). The CA regions are also structured depthwise in clearly defined strata (or layers):
- The alveus is the most superficial layer and contains the axons from pyramidal neurons, passing on toward the fimbria/fornix, one of the major outputs of the hippocampus.
- Stratum oriens (str. oriens) is the next layer below the alveus. The cell bodies of inhibitory basket cells and horizontal trilaminar cells are located in this stratum. The basal dendrites of pyramidal neurons are also found here, where they receive input from other pyramidal cells (recurrent connections, especially in CA3 and CA2), septal fibers and commissural fibers from the contralateral hippocampus. In rodents the two hippocampi are highly connected, but in primates this commissural connection is much sparser.
- Stratum pyramidale (str. pyr.) contains the cell bodies of the pyramidal neurons which are the principal excitatory neurons of the hippocampus. This stratum tends to be one of the more visible strata to the naked eye. In region CA3, this stratum contains synapses from the mossy fibers which course through stratum lucidum. This stratum also contains the cell bodies of many interneurons, including axo-axonic cells, bistratified cells, and radial trilaminar cells.
- Stratum lucidum (str. luc.) is one of the thinnest strata in the hippocampus. Mossy fibers from the dentate gyrus granule cells course through this stratum in CA3, though synapses from these fibers can be found in str. pyr.
- Stratum radiatum (str. rad.), like str. oriens, contains septal and commissural fibers. It also contains Schaffer collateral fibers which are the projection forward from CA3 to CA1. Some interneurons that can be found in more superficial layers can also be found here, including basket cells, bistratified cells, and radial trilaminar cells.
- Stratum lacunosum (str. lac.) is a thin stratum that too contains Schaffer collateral fibers, but it also contains perforant path fibers from the superficial layers of entorhinal cortex. Due to its small size, it is often grouped together with stratum moleculare into a single stratum called stratum lacunosum-moleculare (str. l-m.).
- Stratum moleculare (str. mol.) is the deepest stratum in the hippocampus. Here the perforant path fibers form synapses onto the distal, apical dendrites of pyramidal cells.
- The hippocampal sulcus (sulc.) or fissure is a cell-free region that separates the CA1 field from the dentate gyrus. Because the phase of recorded theta rhythm varies systematically through the strata, the fissure is often used as a fixed reference point for recording EEG as it is easily identifiable.
The dentate gyrus is composed of a similar series of strata:
- The polymorphic layer (poly. lay.) is the most superficial layer of the dentate gyrus and is often considered a separate subfield (see CA4/hilus below). This layer contains many interneurons and the axons of the dentate granule cells pass through this stratum on the way to CA3.
- Stratum granulosum (str. gr.) contains the cell bodies of the dentate granule cells.
- Stratum moleculare, inner third (str. mol. 1/3) is where both commissural fibers from the contralateral dentate gyrus run and form synapses as well as where inputs from the medial septum terminate, both on the proximal dendrites of the granule cells.
- Stratum moleculare, external two thirds (str. mol. 2/3) is the deepest of the strata, sitting just superficial to the hippocampal fissure across from stratum moleculare in the CA fields. The perforant path fibers run through this strata, making excitatory synapses onto the distal apical dendrites of granule cells.

# Subfields
- The fascia dentata is the earliest stage of the hippocampal circuit. Its primary input is the perforant path from the superficial layers of entorhinal cortex. Its principal neurons are tiny granule cells which give rise to unmyelinated axons called the mossy fibers which project to the hilus and CA3. The fascia dentata of the rat contains approximately 1,000,000 granule cells. It receives feedback connections from mossy cells in the hilus at distant levels in the septal and temporal directions. The fascia dentata and the hilus together make up the dentate gyrus. As with all regions of the hippocampus, the dentate gyrus also receives GABAergic and cholinergic input from the medial septum and the diagonal band of Broca.
- Region CA4 (often called the hilus or hilar region when considered part of the dentate gyrus, as neurons here do not have pyramidal morphology like those of areas CA1 & CA3 (suggested by Lorente de No & verified by David G. Amaral)) contains mossy cells that primarily receive inputs from granule cells located nearby in the dentate gyrus in the form of mossy fibers. They also receive a small number of connections from pyramidal cells located in CA3. They, in turn, project back into the dentate gyrus at distant septotemporal levels.
- Region CA3 receives input along the mossy fibers from granule cells in the dentate gyrus (DG) and from projection cells in entorhinal cortex along the perforant path. The mossy fiber pathway terminates in stratum lucidum while the perforant path passes through stratum lacunosum and terminates in stratum moleculare. The inputs from the medial septum and diagonal band of Broca terminate in stratum radiatum, along with commisural connections from the contralateral hippocampus. The pyramidal cells in CA3 (of which there are approximately 200,000 in each hemisphere in the rat) send some axons back to the hilus, but the majority project to regions CA2 and CA1 (a pathway called the Schaffer collaterals), in addition to a significant number of connections that terminate within CA3 (called recurrent connections). Both the recurrent connections and the Schaffer collaterals terminate preferentially in the septal or dorsal direction from the originating cells. CA3 also sends a small set of output fibers to the lateral septum.
- Region CA2 is a small region located between CA3 and CA1. Anatomically, in the rat, it is best defined as the strip of cells that receive perforant path input from EC layer II but do not receive mossy fiber connections from DG. Its pyramidal cells are more similar to those in CA3 than those in CA1, so it is grouped as a separate region. Due to its small size, it is often ignored in discussions of the hippocampus, but its high resistance to epileptic damage makes it notable.
- Region CA1 is the first region in the hippocampal circuit that yields a significant output pathway, which goes to entorhinal cortex layer V. It also sends significant output forward to the subiculum. Like CA3, it receives input from superficial entorhinal cortex along the perforant pathway (note that some authors only consider the input to DG and CA3 to be the perforant pathway, referring to the input to CA1 as the temporoammonic pathway). Unlike CA3, however, it contains very few recurrent connections. In the rat, CA1 contains approximately 250,000 pyramidal cells.
- The subiculum is the end point of the hippocampal circuit. Its primary inputs are axons from region CA1 and from layer III of entorhinal cortex. As with CA1, it sends output to layer V of entorhinal cortex (primarily to medial entorhial cortex), but it also projects to many other areas, including the nucleus accumbens, the anterior thalamic nuclei, the medial mammillary nucleus, the lateral septum, and the presubiculum.

# Notes
-  Amaral and Lavenex, 2006
-  Andersen et al., 1971
-  Andersen et al., 2000