Pdr1,3p gene transcriptions

# Human genes

# Interactions

# Consensus sequences
The upstream activating sequence (UAS) for the Pdr1p/Pdr3p is 5'-TCCGCGGA-3'.
Pdr1p binds to sequence TCCGYGGR (TCCG(C/T)GG(A/G)) of PDRE, which is located within the promoter sequences of its target genes.

# Pdr samplings
Copying TCCGCGGA in "F" yields none between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.
For the Basic programs testing consensus sequence TCCGCGGA (starting with SuccessablesPdr.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
- negative strand, negative direction, looking for TCCGCGGA, 0.
- positive strand, negative direction, looking for TCCGCGGA, 0.
- positive strand, positive direction, looking for TCCGCGGA, 0.
- negative strand, positive direction, looking for TCCGCGGA, 0.
- complement, negative strand, negative direction, looking for AGGCGCCT, 0.
- complement, positive strand, negative direction, looking for AGGCGCCT, 0.
- complement, positive strand, positive direction, looking for AGGCGCCT, 0.
- complement, negative strand, positive direction, looking for AGGCGCCT, 0.
- inverse complement, negative strand, negative direction, looking for TCCGCGGA, 0.
- inverse complement, positive strand, negative direction, looking for TCCGCGGA, 0.
- inverse complement, positive strand, positive direction, looking for TCCGCGGA, 0.
- inverse complement, negative strand, positive direction, looking for TCCGCGGA, 0.
- inverse negative strand, negative direction, looking for AGGCGCCT, 0.
- inverse positive strand, negative direction, looking for AGGCGCCT, 0.
- inverse positive strand, positive direction, looking for AGGCGCCT, 0.
- inverse negative strand, positive direction, looking for AGGCGCCT, 0.

# Pdr1 (Salin) samplings
Copying a responsive elements consensus sequence TCCG(C/T)GG(A/G) and putting the sequence in "F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.
For the Basic programs testing consensus sequence TCCG(C/T)GG(A/G) (starting with SuccessablesPdrS.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
- Negative strand, negative direction: 0.
- Positive strand, negative direction: 0.
- Negative strand, positive direction: 0.
- Positive strand, positive direction: 0.
- inverse complement, negative strand, negative direction: 3, CCCACGGA at 3198, CCCACGGA at 2335, CCCACGGA at 1256.
- inverse complement, positive strand, negative direction: 0.
- inverse complement, negative strand, positive direction: 1, TCCACGGA at 300.
- inverse complement, positive strand, positive direction: 0.

## PdrS (4560-2846) UTRs
- Negative strand, negative direction: CCCACGGA at 3198.

## PdrS negative direction (2596-1) distal promoters
- Negative strand, negative direction: CCCACGGA at 2335, CCCACGGA at 1256.

## PdrS positive direction (4050-1) distal promoters
- Negative strand, positive direction: TCCACGGA at 300.

# Pdr (Salin 2008) random dataset samplings
- PdrSr0: 0.
- PdrSr1: 1, TCCGTGGG at 661.
- PdrSr2: 2, TCCGCGGA at 3565, TCCGCGGA at 3371.
- PdrSr3: 0.
- PdrSr4: 0.
- PdrSr5: 0.
- PdrSr6: 0.
- PdrSr7: 0.
- PdrSr8: 0.
- PdrSr9: 0.
- PdrSr0ci: 1, CCCGCGGA at 1894.
- PdrSr1ci: 0.
- PdrSr2ci: 3, CCCGCGGA at 3875.
- PdrSr3ci: 0.
- PdrSr4ci: 0.
- PdrSr5ci: 0.
- PdrSr6ci: 0.
- PdrSr7ci: 0.
- PdrSr8ci: 0.
- PdrSr9ci: 0.

## PdrSr arbitrary (evens) (4560-2846) UTRs
- PdrSr2: TCCGCGGA at 3565, TCCGCGGA at 3371.
- PdrSr2ci: CCCGCGGA at 3875.

## PdrSr arbitrary negative direction (evens) (2596-1) distal promoters
- PdrSr0ci: CCCGCGGA at 1894.

## PdrSr alternate negative direction (odds) (2596-1) distal promoters
- PdrSr1: TCCGTGGG at 661.

## PdrSr arbitrary positive direction (odds) (4050-1) distal promoters
- PdrSr1: TCCGTGGG at 661.

## PdrSr alternate positive direction (evens) (4050-1) distal promoters
- PdrSr2: TCCGCGGA at 3565, TCCGCGGA at 3371.
- PdrSr0ci: CCCGCGGA at 1894.
- PdrSr2ci: CCCGCGGA at 3875.

# PdrS analysis and results
Pdr1p binds to sequence TCCGYGGR (TCCG(C/T)GG(A/G)) of PDRE, which is located within the promoter sequences of its target genes.
Comparison:
The occurrences of real PdrS UTRs and distals are greater than the randoms. This suggests that the real PdrSs are likely active or activable.

# Acknowledgements
The content on this page was first contributed by: Henry A. Hoff.