diff --git a/features/TCGA-2F-A9KO-01Z-00-DX1.195576CF-B739-4BD9-B15B-4A70AE287D3E.svs/features.npy b/features/TCGA-2F-A9KO-01Z-00-DX1.195576CF-B739-4BD9-B15B-4A70AE287D3E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d5ecfffb68353d5113fc38a3a857ffdb90c1cc89 --- /dev/null +++ b/features/TCGA-2F-A9KO-01Z-00-DX1.195576CF-B739-4BD9-B15B-4A70AE287D3E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:84f743ae05d79bbd5dc34605ec4698cb6a0b7f849cfe49a6ac08d46975c52cc5 +size 186025828 diff --git a/features/TCGA-2F-A9KO-01Z-00-DX1.195576CF-B739-4BD9-B15B-4A70AE287D3E.svs/mask.npy b/features/TCGA-2F-A9KO-01Z-00-DX1.195576CF-B739-4BD9-B15B-4A70AE287D3E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ad347bd382e7bdc688115f8a3840b0c06ff20f7d --- /dev/null +++ b/features/TCGA-2F-A9KO-01Z-00-DX1.195576CF-B739-4BD9-B15B-4A70AE287D3E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:424c7851cf5e701852e419bc168b14f8b5a8214460cbb55f3e719ed1036cfd06 +size 222756992 diff --git a/features/TCGA-2F-A9KO-01Z-00-DX1.195576CF-B739-4BD9-B15B-4A70AE287D3E.svs/metadata.json b/features/TCGA-2F-A9KO-01Z-00-DX1.195576CF-B739-4BD9-B15B-4A70AE287D3E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9a7bb5e6130c5afb522c8a5b6d2833e499dc5641 --- /dev/null +++ b/features/TCGA-2F-A9KO-01Z-00-DX1.195576CF-B739-4BD9-B15B-4A70AE287D3E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22675, "total_number_of_tiles": 22675, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135168, 105472], "tile_mpp": 0.4554, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [9, 7], "5": [17, 13], "6": [33, 26], "7": [66, 52], "8": [132, 103], "9": [264, 206], "10": [528, 412], "11": [1056, 824], "12": [2112, 1648], "13": [4224, 3296], "14": [8448, 6592], "15": [16896, 13184], "16": [33792, 26368], "17": [67584, 52736], "18": [135168, 105472]}, "level_mpp_mapping": {"0": 59690.1888, "1": 29845.0944, "2": 14922.5472, "3": 7461.2736, "4": 3730.6368, "5": 1865.3184, "6": 932.6592, "7": 466.3296, "8": 233.1648, "9": 116.5824, "10": 58.2912, "11": 29.1456, "12": 14.5728, "13": 7.2864, "14": 3.6432, "15": 1.8216, "16": 0.9108, "17": 0.4554, "18": 0.2277}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "97816938bcfac54f2f32ac2ae42d225201760d70ac45654a33a386fc4b071d72"} \ No newline at end of file diff --git a/features/TCGA-2F-A9KP-01Z-00-DX1.3CDF534E-958F-4467-AA7E-FD3C5A86AAAA.svs/features.npy b/features/TCGA-2F-A9KP-01Z-00-DX1.3CDF534E-958F-4467-AA7E-FD3C5A86AAAA.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..432eec64b40d3a8b11fea2cbb73bf25ae3149ebb --- /dev/null +++ b/features/TCGA-2F-A9KP-01Z-00-DX1.3CDF534E-958F-4467-AA7E-FD3C5A86AAAA.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3ed6c1993df63dd48d8b69e78bcdfe4283d15ad7440d1cd12503d863cce94021 +size 264521700 diff --git a/features/TCGA-2F-A9KP-01Z-00-DX1.3CDF534E-958F-4467-AA7E-FD3C5A86AAAA.svs/mask.npy b/features/TCGA-2F-A9KP-01Z-00-DX1.3CDF534E-958F-4467-AA7E-FD3C5A86AAAA.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3281e17c17ef6d3c27044bc1fb6078666ae5c34b --- /dev/null +++ b/features/TCGA-2F-A9KP-01Z-00-DX1.3CDF534E-958F-4467-AA7E-FD3C5A86AAAA.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5525edc5390a53c41271ac6977f834087b9f20b4afefffe36fab99b7ccd1e2ab +size 173424768 diff --git a/features/TCGA-2F-A9KP-01Z-00-DX1.3CDF534E-958F-4467-AA7E-FD3C5A86AAAA.svs/metadata.json b/features/TCGA-2F-A9KP-01Z-00-DX1.3CDF534E-958F-4467-AA7E-FD3C5A86AAAA.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1ef9ce1fc57a80a7eb7b7093db937f831ee89c76 --- /dev/null +++ b/features/TCGA-2F-A9KP-01Z-00-DX1.3CDF534E-958F-4467-AA7E-FD3C5A86AAAA.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32243, "total_number_of_tiles": 32243, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [118784, 93440], "tile_mpp": 0.4554, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 23], "6": [58, 46], "7": [116, 92], "8": [232, 183], "9": [464, 365], "10": [928, 730], "11": [1856, 1460], "12": [3712, 2920], "13": [7424, 5840], "14": [14848, 11680], "15": [29696, 23360], "16": [59392, 46720], "17": [118784, 93440]}, "level_mpp_mapping": {"0": 29845.0944, "1": 14922.5472, "2": 7461.2736, "3": 3730.6368, "4": 1865.3184, "5": 932.6592, "6": 466.3296, "7": 233.1648, "8": 116.5824, "9": 58.2912, "10": 29.1456, "11": 14.5728, "12": 7.2864, "13": 3.6432, "14": 1.8216, "15": 0.9108, "16": 0.4554, "17": 0.2277}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f0a26aa8b96a21f3c66ccfb163bb40f630ac1591aca693f0b5bbb5ca5195938c"} \ No newline at end of file diff --git a/features/TCGA-2F-A9KP-01Z-00-DX2.718C82A3-252B-498E-BFBE-F4E4EB431BF5.svs/features.npy b/features/TCGA-2F-A9KP-01Z-00-DX2.718C82A3-252B-498E-BFBE-F4E4EB431BF5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..82546c4a9f3c24677d8dbb87d6b700e308edd7d3 --- /dev/null +++ b/features/TCGA-2F-A9KP-01Z-00-DX2.718C82A3-252B-498E-BFBE-F4E4EB431BF5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b8ad5201bf233265d2082b7ce977f3fc7e27f706b1757d6823968bd5c125d25d +size 263159836 diff --git a/features/TCGA-2F-A9KP-01Z-00-DX2.718C82A3-252B-498E-BFBE-F4E4EB431BF5.svs/mask.npy b/features/TCGA-2F-A9KP-01Z-00-DX2.718C82A3-252B-498E-BFBE-F4E4EB431BF5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0fe0988fb7c3a3d4e5c748141a67590b04bee171 --- /dev/null +++ b/features/TCGA-2F-A9KP-01Z-00-DX2.718C82A3-252B-498E-BFBE-F4E4EB431BF5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e98b3c74aa3f8f2fb52575ec21dfed87adb177ae17c78157ceaf80e0341d8650 +size 180486272 diff --git a/features/TCGA-2F-A9KP-01Z-00-DX2.718C82A3-252B-498E-BFBE-F4E4EB431BF5.svs/metadata.json b/features/TCGA-2F-A9KP-01Z-00-DX2.718C82A3-252B-498E-BFBE-F4E4EB431BF5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e916f0b6ab5e574d67d7ebb32ed34229bba6a59c --- /dev/null +++ b/features/TCGA-2F-A9KP-01Z-00-DX2.718C82A3-252B-498E-BFBE-F4E4EB431BF5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32077, "total_number_of_tiles": 32077, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [110592, 104448], "tile_mpp": 0.4554, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 4], "3": [7, 7], "4": [14, 13], "5": [27, 26], "6": [54, 51], "7": [108, 102], "8": [216, 204], "9": [432, 408], "10": [864, 816], "11": [1728, 1632], "12": [3456, 3264], "13": [6912, 6528], "14": [13824, 13056], "15": [27648, 26112], "16": [55296, 52224], "17": [110592, 104448]}, "level_mpp_mapping": {"0": 29845.0944, "1": 14922.5472, "2": 7461.2736, "3": 3730.6368, "4": 1865.3184, "5": 932.6592, "6": 466.3296, "7": 233.1648, "8": 116.5824, "9": 58.2912, "10": 29.1456, "11": 14.5728, "12": 7.2864, "13": 3.6432, "14": 1.8216, "15": 0.9108, "16": 0.4554, "17": 0.2277}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bc9c4b913a7a338793b785bf073fdd81ed042aa71067a5bea60496dc0e870fdd"} \ No newline at end of file diff --git a/features/TCGA-2F-A9KQ-01Z-00-DX1.1C8CB2DD-5CC6-4E99-A0F9-32A0F598F5F9.svs/features.npy b/features/TCGA-2F-A9KQ-01Z-00-DX1.1C8CB2DD-5CC6-4E99-A0F9-32A0F598F5F9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ee9b09c4cf4eccb082abb9a7f623151286b0c717 --- /dev/null +++ b/features/TCGA-2F-A9KQ-01Z-00-DX1.1C8CB2DD-5CC6-4E99-A0F9-32A0F598F5F9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:865e3307d37bb81c7355594bf701bc7b508feac36dbe4db35eb8322d7645ce34 +size 132420892 diff --git a/features/TCGA-2F-A9KQ-01Z-00-DX1.1C8CB2DD-5CC6-4E99-A0F9-32A0F598F5F9.svs/mask.npy b/features/TCGA-2F-A9KQ-01Z-00-DX1.1C8CB2DD-5CC6-4E99-A0F9-32A0F598F5F9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..882890b08fe00e3bf4393ab6535b47e14e20b717 --- /dev/null +++ b/features/TCGA-2F-A9KQ-01Z-00-DX1.1C8CB2DD-5CC6-4E99-A0F9-32A0F598F5F9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:edc9a7294e693d1f741e8fdebb69ccb7446cbafad7f5c706065f20a704bfe560 +size 133595264 diff --git a/features/TCGA-2F-A9KQ-01Z-00-DX1.1C8CB2DD-5CC6-4E99-A0F9-32A0F598F5F9.svs/metadata.json b/features/TCGA-2F-A9KQ-01Z-00-DX1.1C8CB2DD-5CC6-4E99-A0F9-32A0F598F5F9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..53d973e9674be168a33f9fb7d6bf7b76657e539e --- /dev/null +++ b/features/TCGA-2F-A9KQ-01Z-00-DX1.1C8CB2DD-5CC6-4E99-A0F9-32A0F598F5F9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16141, "total_number_of_tiles": 16141, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [110592, 77312], "tile_mpp": 0.4554, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 19], "6": [54, 38], "7": [108, 76], "8": [216, 151], "9": [432, 302], "10": [864, 604], "11": [1728, 1208], "12": [3456, 2416], "13": [6912, 4832], "14": [13824, 9664], "15": [27648, 19328], "16": [55296, 38656], "17": [110592, 77312]}, "level_mpp_mapping": {"0": 29845.0944, "1": 14922.5472, "2": 7461.2736, "3": 3730.6368, "4": 1865.3184, "5": 932.6592, "6": 466.3296, "7": 233.1648, "8": 116.5824, "9": 58.2912, "10": 29.1456, "11": 14.5728, "12": 7.2864, "13": 3.6432, "14": 1.8216, "15": 0.9108, "16": 0.4554, "17": 0.2277}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "636ae4618bac90b25576e75f82fdc0eea978683f4dbbbd9d23ebfb3fbfb0467e"} \ No newline at end of file diff --git a/features/TCGA-2F-A9KR-01Z-00-DX1.D6A4BD2D-18F3-4FA6-8272-60392DDAF7B5.svs/features.npy b/features/TCGA-2F-A9KR-01Z-00-DX1.D6A4BD2D-18F3-4FA6-8272-60392DDAF7B5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7e3e49490f8c9475af8e3c165867fb5a60fbe0e3 --- /dev/null +++ b/features/TCGA-2F-A9KR-01Z-00-DX1.D6A4BD2D-18F3-4FA6-8272-60392DDAF7B5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4bd28f907b0035bcce39d439e0decd6418e4439a49ff3c30b53d1a359a9fc8d4 +size 308815096 diff --git a/features/TCGA-2F-A9KR-01Z-00-DX1.D6A4BD2D-18F3-4FA6-8272-60392DDAF7B5.svs/mask.npy b/features/TCGA-2F-A9KR-01Z-00-DX1.D6A4BD2D-18F3-4FA6-8272-60392DDAF7B5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1c179708d9e39075c581d8d46d23f7a5ad4ad414 --- /dev/null +++ b/features/TCGA-2F-A9KR-01Z-00-DX1.D6A4BD2D-18F3-4FA6-8272-60392DDAF7B5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85d5bfd6bebd95c6f82f7625315c2492e47062db4e4015bfbe4c63d536af9432 +size 198082688 diff --git a/features/TCGA-2F-A9KR-01Z-00-DX1.D6A4BD2D-18F3-4FA6-8272-60392DDAF7B5.svs/metadata.json b/features/TCGA-2F-A9KR-01Z-00-DX1.D6A4BD2D-18F3-4FA6-8272-60392DDAF7B5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ba4b7afe97a12401cff09b04141a77a3008fc163 --- /dev/null +++ b/features/TCGA-2F-A9KR-01Z-00-DX1.D6A4BD2D-18F3-4FA6-8272-60392DDAF7B5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 37642, "total_number_of_tiles": 37642, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [122880, 103168], "tile_mpp": 0.4554, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 4], "3": [8, 7], "4": [15, 13], "5": [30, 26], "6": [60, 51], "7": [120, 101], "8": [240, 202], "9": [480, 403], "10": [960, 806], "11": [1920, 1612], "12": [3840, 3224], "13": [7680, 6448], "14": [15360, 12896], "15": [30720, 25792], "16": [61440, 51584], "17": [122880, 103168]}, "level_mpp_mapping": {"0": 29845.0944, "1": 14922.5472, "2": 7461.2736, "3": 3730.6368, "4": 1865.3184, "5": 932.6592, "6": 466.3296, "7": 233.1648, "8": 116.5824, "9": 58.2912, "10": 29.1456, "11": 14.5728, "12": 7.2864, "13": 3.6432, "14": 1.8216, "15": 0.9108, "16": 0.4554, "17": 0.2277}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b42d17bb0c4373235e8d460918c667abc872a925786de1f5a613987e8c30a535"} \ No newline at end of file diff --git a/features/TCGA-2F-A9KT-01Z-00-DX1.ADD6D87C-0CC2-4B1F-A75F-108C9EB3970F.svs/features.npy b/features/TCGA-2F-A9KT-01Z-00-DX1.ADD6D87C-0CC2-4B1F-A75F-108C9EB3970F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b0265df32331b7220ec03575a35c2200bc653171 --- /dev/null +++ b/features/TCGA-2F-A9KT-01Z-00-DX1.ADD6D87C-0CC2-4B1F-A75F-108C9EB3970F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:446c6de8852bbe9657aa4fba429fd2235b303de94981dbff8e255f761115cf1a +size 371157292 diff --git a/features/TCGA-2F-A9KT-01Z-00-DX1.ADD6D87C-0CC2-4B1F-A75F-108C9EB3970F.svs/mask.npy b/features/TCGA-2F-A9KT-01Z-00-DX1.ADD6D87C-0CC2-4B1F-A75F-108C9EB3970F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..15a3c597baf9257a10e23677bf72331dc2fe6c58 --- /dev/null +++ b/features/TCGA-2F-A9KT-01Z-00-DX1.ADD6D87C-0CC2-4B1F-A75F-108C9EB3970F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:306951e894d854328d8b6a1a88e8ecadcf0082b960dabc2428bdfa4eb594f4b6 +size 213385344 diff --git a/features/TCGA-2F-A9KT-01Z-00-DX1.ADD6D87C-0CC2-4B1F-A75F-108C9EB3970F.svs/metadata.json b/features/TCGA-2F-A9KT-01Z-00-DX1.ADD6D87C-0CC2-4B1F-A75F-108C9EB3970F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c66bad6633ed69fd80828c433182af98e1ab29a1 --- /dev/null +++ b/features/TCGA-2F-A9KT-01Z-00-DX1.ADD6D87C-0CC2-4B1F-A75F-108C9EB3970F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 45241, "total_number_of_tiles": 45241, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [131072, 104192], "tile_mpp": 0.4554, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 4], "3": [8, 7], "4": [16, 13], "5": [32, 26], "6": [64, 51], "7": [128, 102], "8": [256, 204], "9": [512, 407], "10": [1024, 814], "11": [2048, 1628], "12": [4096, 3256], "13": [8192, 6512], "14": [16384, 13024], "15": [32768, 26048], "16": [65536, 52096], "17": [131072, 104192]}, "level_mpp_mapping": {"0": 29845.0944, "1": 14922.5472, "2": 7461.2736, "3": 3730.6368, "4": 1865.3184, "5": 932.6592, "6": 466.3296, "7": 233.1648, "8": 116.5824, "9": 58.2912, "10": 29.1456, "11": 14.5728, "12": 7.2864, "13": 3.6432, "14": 1.8216, "15": 0.9108, "16": 0.4554, "17": 0.2277}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1d43f33d38e28b01f8201fce812c48a882ba2a096b0a02f82d29bc215cff7d90"} \ No newline at end of file diff --git a/features/TCGA-2F-A9KT-01Z-00-DX2.A06896B2-FC9A-430D-8F59-C89EEA002C8B.svs/features.npy b/features/TCGA-2F-A9KT-01Z-00-DX2.A06896B2-FC9A-430D-8F59-C89EEA002C8B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5320f768db91682e4c5a817581dfba7760b3cf38 --- /dev/null +++ b/features/TCGA-2F-A9KT-01Z-00-DX2.A06896B2-FC9A-430D-8F59-C89EEA002C8B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:28f70e5e1fc9d970fcd02f3f74932719c32064457517251a481b1216472b2ec3 +size 392676384 diff --git a/features/TCGA-2F-A9KT-01Z-00-DX2.A06896B2-FC9A-430D-8F59-C89EEA002C8B.svs/mask.npy b/features/TCGA-2F-A9KT-01Z-00-DX2.A06896B2-FC9A-430D-8F59-C89EEA002C8B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..cbeae5301f0d69c1ffa9878377a5a8585d45e314 --- /dev/null +++ b/features/TCGA-2F-A9KT-01Z-00-DX2.A06896B2-FC9A-430D-8F59-C89EEA002C8B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:022d08235d9969722ecb40576bb943667c55f49c9bfcd2bdd6431a1468c7cdd3 +size 210763904 diff --git a/features/TCGA-2F-A9KT-01Z-00-DX2.A06896B2-FC9A-430D-8F59-C89EEA002C8B.svs/metadata.json b/features/TCGA-2F-A9KT-01Z-00-DX2.A06896B2-FC9A-430D-8F59-C89EEA002C8B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c4f3369e8d9f794d4af7dc6e46159dc29d2a145b --- /dev/null +++ b/features/TCGA-2F-A9KT-01Z-00-DX2.A06896B2-FC9A-430D-8F59-C89EEA002C8B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 47864, "total_number_of_tiles": 47864, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [131072, 102912], "tile_mpp": 0.4554, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 4], "3": [8, 7], "4": [16, 13], "5": [32, 26], "6": [64, 51], "7": [128, 101], "8": [256, 201], "9": [512, 402], "10": [1024, 804], "11": [2048, 1608], "12": [4096, 3216], "13": [8192, 6432], "14": [16384, 12864], "15": [32768, 25728], "16": [65536, 51456], "17": [131072, 102912]}, "level_mpp_mapping": {"0": 29845.0944, "1": 14922.5472, "2": 7461.2736, "3": 3730.6368, "4": 1865.3184, "5": 932.6592, "6": 466.3296, "7": 233.1648, "8": 116.5824, "9": 58.2912, "10": 29.1456, "11": 14.5728, "12": 7.2864, "13": 3.6432, "14": 1.8216, "15": 0.9108, "16": 0.4554, "17": 0.2277}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0b6d96a17aea7df2170e706bda6b97ccedc1f8d02d2a026a4a898b09ec935942"} \ No newline at end of file diff --git a/features/TCGA-2F-A9KW-01Z-00-DX1.CECFDA2E-2CE7-4115-B4E6-A3D75B130232.svs/features.npy b/features/TCGA-2F-A9KW-01Z-00-DX1.CECFDA2E-2CE7-4115-B4E6-A3D75B130232.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6228b920c08d5a5dfc3dee81630da6250236ff77 --- /dev/null +++ b/features/TCGA-2F-A9KW-01Z-00-DX1.CECFDA2E-2CE7-4115-B4E6-A3D75B130232.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8ea24e95d6e73faf718fedae0a2ac1a0c872c96de4275c452cd58e3865e1c4cc +size 294105324 diff --git a/features/TCGA-2F-A9KW-01Z-00-DX1.CECFDA2E-2CE7-4115-B4E6-A3D75B130232.svs/mask.npy b/features/TCGA-2F-A9KW-01Z-00-DX1.CECFDA2E-2CE7-4115-B4E6-A3D75B130232.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0fb8e215661bd6b523a10ad993a548a2980016ce --- /dev/null +++ b/features/TCGA-2F-A9KW-01Z-00-DX1.CECFDA2E-2CE7-4115-B4E6-A3D75B130232.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2407b1c6f8907f387fea77894f890d40c39130610b0cb4d07e3af4dd4a52f180 +size 228163712 diff --git a/features/TCGA-2F-A9KW-01Z-00-DX1.CECFDA2E-2CE7-4115-B4E6-A3D75B130232.svs/metadata.json b/features/TCGA-2F-A9KW-01Z-00-DX1.CECFDA2E-2CE7-4115-B4E6-A3D75B130232.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2155655aa5c065f679b075fa5cb982efccee13ba --- /dev/null +++ b/features/TCGA-2F-A9KW-01Z-00-DX1.CECFDA2E-2CE7-4115-B4E6-A3D75B130232.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 35849, "total_number_of_tiles": 35849, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135168, 108032], "tile_mpp": 0.4554, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [9, 7], "5": [17, 14], "6": [33, 27], "7": [66, 53], "8": [132, 106], "9": [264, 211], "10": [528, 422], "11": [1056, 844], "12": [2112, 1688], "13": [4224, 3376], "14": [8448, 6752], "15": [16896, 13504], "16": [33792, 27008], "17": [67584, 54016], "18": [135168, 108032]}, "level_mpp_mapping": {"0": 59690.1888, "1": 29845.0944, "2": 14922.5472, "3": 7461.2736, "4": 3730.6368, "5": 1865.3184, "6": 932.6592, "7": 466.3296, "8": 233.1648, "9": 116.5824, "10": 58.2912, "11": 29.1456, "12": 14.5728, "13": 7.2864, "14": 3.6432, "15": 1.8216, "16": 0.9108, "17": 0.4554, "18": 0.2277}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "dcc04411d1fca532cd3657d28e152bfe591b4478255afcc3da572d7d128794ca"} \ No newline at end of file diff --git a/features/TCGA-2F-A9KW-01Z-00-DX2.10D33B2F-631F-4E3D-BF53-24D40A1088A3.svs/features.npy b/features/TCGA-2F-A9KW-01Z-00-DX2.10D33B2F-631F-4E3D-BF53-24D40A1088A3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2145b1878561afdbdc4a920acca79d8421e39cdd --- /dev/null +++ b/features/TCGA-2F-A9KW-01Z-00-DX2.10D33B2F-631F-4E3D-BF53-24D40A1088A3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3431cbd5949fa6a864e5996d763b229a16e75fe3fdea56c5b5990673e5ba12b7 +size 139263028 diff --git a/features/TCGA-2F-A9KW-01Z-00-DX2.10D33B2F-631F-4E3D-BF53-24D40A1088A3.svs/mask.npy b/features/TCGA-2F-A9KW-01Z-00-DX2.10D33B2F-631F-4E3D-BF53-24D40A1088A3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..847df0a57c10a5f41500e20b6aa08aaae7a374f0 --- /dev/null +++ b/features/TCGA-2F-A9KW-01Z-00-DX2.10D33B2F-631F-4E3D-BF53-24D40A1088A3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:067f5f99fbd0fd31c94fb2ed39a531832b011cfb747c911415a2d7f42176e006 +size 128680064 diff --git a/features/TCGA-2F-A9KW-01Z-00-DX2.10D33B2F-631F-4E3D-BF53-24D40A1088A3.svs/metadata.json b/features/TCGA-2F-A9KW-01Z-00-DX2.10D33B2F-631F-4E3D-BF53-24D40A1088A3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a1f3e20a5d14aaa2f7cba838e90ca8a73773e3c3 --- /dev/null +++ b/features/TCGA-2F-A9KW-01Z-00-DX2.10D33B2F-631F-4E3D-BF53-24D40A1088A3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16975, "total_number_of_tiles": 16975, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [90112, 91392], "tile_mpp": 0.4554, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 12], "5": [22, 23], "6": [44, 45], "7": [88, 90], "8": [176, 179], "9": [352, 357], "10": [704, 714], "11": [1408, 1428], "12": [2816, 2856], "13": [5632, 5712], "14": [11264, 11424], "15": [22528, 22848], "16": [45056, 45696], "17": [90112, 91392]}, "level_mpp_mapping": {"0": 29845.0944, "1": 14922.5472, "2": 7461.2736, "3": 3730.6368, "4": 1865.3184, "5": 932.6592, "6": 466.3296, "7": 233.1648, "8": 116.5824, "9": 58.2912, "10": 29.1456, "11": 14.5728, "12": 7.2864, "13": 3.6432, "14": 1.8216, "15": 0.9108, "16": 0.4554, "17": 0.2277}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4af8351dcd6dc4cf636e405e24813cd2fc9e7f37bde7458ae433e333f20d9f1b"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA7M-01Z-00-DX1.05317C75-A8F3-4124-95D2-F039BEFFE63A.svs/features.npy b/features/TCGA-4Z-AA7M-01Z-00-DX1.05317C75-A8F3-4124-95D2-F039BEFFE63A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..381e623631ce407d282353e0a9f8e289817526e2 --- /dev/null +++ b/features/TCGA-4Z-AA7M-01Z-00-DX1.05317C75-A8F3-4124-95D2-F039BEFFE63A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9754996902121e5f995c52a47e13bb89ac52009416a82558ee0ab42f4a6d6a3d +size 203689040 diff --git a/features/TCGA-4Z-AA7M-01Z-00-DX1.05317C75-A8F3-4124-95D2-F039BEFFE63A.svs/mask.npy b/features/TCGA-4Z-AA7M-01Z-00-DX1.05317C75-A8F3-4124-95D2-F039BEFFE63A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d07b116bc09b8908d3a426b93002cee77375c047 --- /dev/null +++ b/features/TCGA-4Z-AA7M-01Z-00-DX1.05317C75-A8F3-4124-95D2-F039BEFFE63A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e8972fbfadb08c08df1c0cf8d27f7efc27fc1f7e7f3d43a6892d74e51882900c +size 142272752 diff --git a/features/TCGA-4Z-AA7M-01Z-00-DX1.05317C75-A8F3-4124-95D2-F039BEFFE63A.svs/metadata.json b/features/TCGA-4Z-AA7M-01Z-00-DX1.05317C75-A8F3-4124-95D2-F039BEFFE63A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..05a74e01541bd1f77877f63362b5d1b832496cf4 --- /dev/null +++ b/features/TCGA-4Z-AA7M-01Z-00-DX1.05317C75-A8F3-4124-95D2-F039BEFFE63A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24828, "total_number_of_tiles": 24828, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [103584, 87901], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 22], "6": [51, 43], "7": [102, 86], "8": [203, 172], "9": [405, 344], "10": [810, 687], "11": [1619, 1374], "12": [3237, 2747], "13": [6474, 5494], "14": [12948, 10988], "15": [25896, 21976], "16": [51792, 43951], "17": [103584, 87901]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b7477558acd7cbdad640592d43b75ef6"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA7N-01Z-00-DX1.10AA3499-6678-4DB2-9466-9CB3EA25CBB6.svs/features.npy b/features/TCGA-4Z-AA7N-01Z-00-DX1.10AA3499-6678-4DB2-9466-9CB3EA25CBB6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..fb2afa9638fdbcc0e2883b5f9cf98afa49be2f55 --- /dev/null +++ b/features/TCGA-4Z-AA7N-01Z-00-DX1.10AA3499-6678-4DB2-9466-9CB3EA25CBB6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:346244c2bff48f14a46b70cb258d154a2371a30f2810a99975308181e7caaed5 +size 170594104 diff --git a/features/TCGA-4Z-AA7N-01Z-00-DX1.10AA3499-6678-4DB2-9466-9CB3EA25CBB6.svs/mask.npy b/features/TCGA-4Z-AA7N-01Z-00-DX1.10AA3499-6678-4DB2-9466-9CB3EA25CBB6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c1b1e8fe296ff6c4c84d870fc2c8502dea21db5e --- /dev/null +++ b/features/TCGA-4Z-AA7N-01Z-00-DX1.10AA3499-6678-4DB2-9466-9CB3EA25CBB6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a80634c9bbc97d1d691fc149adf946b67e97bc9736ca37409ad405edaeee97a +size 135885404 diff --git a/features/TCGA-4Z-AA7N-01Z-00-DX1.10AA3499-6678-4DB2-9466-9CB3EA25CBB6.svs/metadata.json b/features/TCGA-4Z-AA7N-01Z-00-DX1.10AA3499-6678-4DB2-9466-9CB3EA25CBB6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5936404716ff948e981c4e636e384cf85f2b683c --- /dev/null +++ b/features/TCGA-4Z-AA7N-01Z-00-DX1.10AA3499-6678-4DB2-9466-9CB3EA25CBB6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20794, "total_number_of_tiles": 20794, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107568, 80833], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 20], "6": [53, 40], "7": [106, 79], "8": [211, 158], "9": [421, 316], "10": [841, 632], "11": [1681, 1264], "12": [3362, 2527], "13": [6723, 5053], "14": [13446, 10105], "15": [26892, 20209], "16": [53784, 40417], "17": [107568, 80833]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "fdc177adb5b483d5c43a2c980f21bd5b"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA7O-01Z-00-DX1.A45C32E8-AA40-4182-8A6F-986DFE56A748.svs/features.npy b/features/TCGA-4Z-AA7O-01Z-00-DX1.A45C32E8-AA40-4182-8A6F-986DFE56A748.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2275cd8ef34a6b908e3437f18a9999878bf1ff38 --- /dev/null +++ b/features/TCGA-4Z-AA7O-01Z-00-DX1.A45C32E8-AA40-4182-8A6F-986DFE56A748.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4970858a750ae77486ebc2b32d8109327c7afad3173ef299848693fb3f79e45f +size 187256428 diff --git a/features/TCGA-4Z-AA7O-01Z-00-DX1.A45C32E8-AA40-4182-8A6F-986DFE56A748.svs/mask.npy b/features/TCGA-4Z-AA7O-01Z-00-DX1.A45C32E8-AA40-4182-8A6F-986DFE56A748.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d6defe3035c45d78ac20d2d67304208e00626717 --- /dev/null +++ b/features/TCGA-4Z-AA7O-01Z-00-DX1.A45C32E8-AA40-4182-8A6F-986DFE56A748.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3fed010adebfdb5baf1028c9a7706b90ef962659f75c0c1f26c8d0d48a22fade +size 141131480 diff --git a/features/TCGA-4Z-AA7O-01Z-00-DX1.A45C32E8-AA40-4182-8A6F-986DFE56A748.svs/metadata.json b/features/TCGA-4Z-AA7O-01Z-00-DX1.A45C32E8-AA40-4182-8A6F-986DFE56A748.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..323778d653233ad7cde749305d5f5da11a4f18cf --- /dev/null +++ b/features/TCGA-4Z-AA7O-01Z-00-DX1.A45C32E8-AA40-4182-8A6F-986DFE56A748.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22825, "total_number_of_tiles": 22825, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [117528, 76837], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [29, 19], "6": [58, 38], "7": [115, 76], "8": [230, 151], "9": [460, 301], "10": [919, 601], "11": [1837, 1201], "12": [3673, 2402], "13": [7346, 4803], "14": [14691, 9605], "15": [29382, 19210], "16": [58764, 38419], "17": [117528, 76837]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "722f48eac0c230d925bf80aad6a2dff1"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA7Q-01Z-00-DX1.9C30EAED-8DE3-437C-8852-0C64B415AFA8.svs/features.npy b/features/TCGA-4Z-AA7Q-01Z-00-DX1.9C30EAED-8DE3-437C-8852-0C64B415AFA8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cbaa21b88aa4be43bad87da3ed9bb2718de4b1f6 --- /dev/null +++ b/features/TCGA-4Z-AA7Q-01Z-00-DX1.9C30EAED-8DE3-437C-8852-0C64B415AFA8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c557fb03f88e309f00891ea413ef0c57f1bf3ddcefa577d8d036cd25f4bce0d8 +size 167328912 diff --git a/features/TCGA-4Z-AA7Q-01Z-00-DX1.9C30EAED-8DE3-437C-8852-0C64B415AFA8.svs/mask.npy b/features/TCGA-4Z-AA7Q-01Z-00-DX1.9C30EAED-8DE3-437C-8852-0C64B415AFA8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..fe4d2f6540a808b12870140541c21e65fb23cb80 --- /dev/null +++ b/features/TCGA-4Z-AA7Q-01Z-00-DX1.9C30EAED-8DE3-437C-8852-0C64B415AFA8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0bb586f8419ca56ac0ece1e24f0d0de203b9a69cd62a3367370381e1a90b2641 +size 130944480 diff --git a/features/TCGA-4Z-AA7Q-01Z-00-DX1.9C30EAED-8DE3-437C-8852-0C64B415AFA8.svs/metadata.json b/features/TCGA-4Z-AA7Q-01Z-00-DX1.9C30EAED-8DE3-437C-8852-0C64B415AFA8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ea1965f299e696b1c6a4859a3e653491da536975 --- /dev/null +++ b/features/TCGA-4Z-AA7Q-01Z-00-DX1.9C30EAED-8DE3-437C-8852-0C64B415AFA8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20396, "total_number_of_tiles": 20396, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93624, 89489], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [23, 22], "6": [46, 44], "7": [92, 88], "8": [183, 175], "9": [366, 350], "10": [732, 700], "11": [1463, 1399], "12": [2926, 2797], "13": [5852, 5594], "14": [11703, 11187], "15": [23406, 22373], "16": [46812, 44745], "17": [93624, 89489]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "fbc6a985cec4b410dbdc29aaf0c15a8d"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.svs/features.npy b/features/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7df338a32990d87462209b4c6bc1f317a0d23c8d --- /dev/null +++ b/features/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:32d5e98c8ca5e31a0e760d549a0b81727f8355e4a6d5d983f91abc67aca53846 +size 131846612 diff --git a/features/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.svs/mask.npy b/features/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ddf73f08474a16ac67070a1f1ea7dbddd37c2e3b --- /dev/null +++ b/features/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d67668a0f4297f3b7a493953c4deed00236ac0d806e79ff16284d8486aa1ee47 +size 97975288 diff --git a/features/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.svs/metadata.json b/features/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1ba14a10f67b8c257b6421d35a393c1623cbc75d --- /dev/null +++ b/features/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16071, "total_number_of_tiles": 16071, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [81672, 76761], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [10, 10], "5": [20, 19], "6": [40, 38], "7": [80, 75], "8": [160, 150], "9": [320, 300], "10": [639, 600], "11": [1277, 1200], "12": [2553, 2399], "13": [5105, 4798], "14": [10209, 9596], "15": [20418, 19191], "16": [40836, 38381], "17": [81672, 76761]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "48e7a87a4210001bd84975df4b3d1a4b"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA7S-01Z-00-DX1.35242781-51FD-4883-A347-6EADC40E39C2.svs/features.npy b/features/TCGA-4Z-AA7S-01Z-00-DX1.35242781-51FD-4883-A347-6EADC40E39C2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c938bbfc01f9b0ca7b51986b7e7241137bf0f10d --- /dev/null +++ b/features/TCGA-4Z-AA7S-01Z-00-DX1.35242781-51FD-4883-A347-6EADC40E39C2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7ba1ae09eff014fd82c5199566e07f73a08f81067689f756fa3aa777be62b387 +size 112050360 diff --git a/features/TCGA-4Z-AA7S-01Z-00-DX1.35242781-51FD-4883-A347-6EADC40E39C2.svs/mask.npy b/features/TCGA-4Z-AA7S-01Z-00-DX1.35242781-51FD-4883-A347-6EADC40E39C2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4ac707b576f5b308cb79910ae44df3b8e72e8d7e --- /dev/null +++ b/features/TCGA-4Z-AA7S-01Z-00-DX1.35242781-51FD-4883-A347-6EADC40E39C2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2d8a95a1497ff2d5533a2318e6ce92d23dac1b81f05910730550007654681a93 +size 97439804 diff --git a/features/TCGA-4Z-AA7S-01Z-00-DX1.35242781-51FD-4883-A347-6EADC40E39C2.svs/metadata.json b/features/TCGA-4Z-AA7S-01Z-00-DX1.35242781-51FD-4883-A347-6EADC40E39C2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9f164d80fab2b6c7391ba26488a31e9cfa116682 --- /dev/null +++ b/features/TCGA-4Z-AA7S-01Z-00-DX1.35242781-51FD-4883-A347-6EADC40E39C2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13658, "total_number_of_tiles": 13658, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [75696, 82376], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 6], "4": [10, 11], "5": [19, 21], "6": [37, 41], "7": [74, 81], "8": [148, 161], "9": [296, 322], "10": [592, 644], "11": [1183, 1288], "12": [2366, 2575], "13": [4731, 5149], "14": [9462, 10297], "15": [18924, 20594], "16": [37848, 41188], "17": [75696, 82376]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1c6e5a30f5223aaa339e2d83e9f8baaf"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA7W-01Z-00-DX1.9BE6DF4E-480F-483E-8299-D949B5C09B4B.svs/features.npy b/features/TCGA-4Z-AA7W-01Z-00-DX1.9BE6DF4E-480F-483E-8299-D949B5C09B4B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..71a3545097f751ce36594d97388a73028c951ced --- /dev/null +++ b/features/TCGA-4Z-AA7W-01Z-00-DX1.9BE6DF4E-480F-483E-8299-D949B5C09B4B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fcdb6b17d82a1234b27fdf31a803a5ee5498ffe114cdf9b19874c76b210c9dd7 +size 166984344 diff --git a/features/TCGA-4Z-AA7W-01Z-00-DX1.9BE6DF4E-480F-483E-8299-D949B5C09B4B.svs/mask.npy b/features/TCGA-4Z-AA7W-01Z-00-DX1.9BE6DF4E-480F-483E-8299-D949B5C09B4B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a3d20d6465f1fe88d2f4de724593cf3c66c8fdc3 --- /dev/null +++ b/features/TCGA-4Z-AA7W-01Z-00-DX1.9BE6DF4E-480F-483E-8299-D949B5C09B4B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a0c2da7c56f8baea2a38ae48ece6287a39066368be993d49f747c7eea3883d0 +size 128814352 diff --git a/features/TCGA-4Z-AA7W-01Z-00-DX1.9BE6DF4E-480F-483E-8299-D949B5C09B4B.svs/metadata.json b/features/TCGA-4Z-AA7W-01Z-00-DX1.9BE6DF4E-480F-483E-8299-D949B5C09B4B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e3f951a3b5a1f3a88b174f6e3520bf3960560f68 --- /dev/null +++ b/features/TCGA-4Z-AA7W-01Z-00-DX1.9BE6DF4E-480F-483E-8299-D949B5C09B4B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20354, "total_number_of_tiles": 20354, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93624, 88043], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [23, 22], "6": [46, 43], "7": [92, 86], "8": [183, 172], "9": [366, 344], "10": [732, 688], "11": [1463, 1376], "12": [2926, 2752], "13": [5852, 5503], "14": [11703, 11006], "15": [23406, 22011], "16": [46812, 44022], "17": [93624, 88043]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f86ba4cb3c77c4aa187c17a71b12e923"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA7Y-01Z-00-DX1.5771D5DA-5163-4F6C-A99A-DA682D3F059F.svs/features.npy b/features/TCGA-4Z-AA7Y-01Z-00-DX1.5771D5DA-5163-4F6C-A99A-DA682D3F059F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ab175ea5603ec54b33540f7ea9ac3c0d409746e7 --- /dev/null +++ b/features/TCGA-4Z-AA7Y-01Z-00-DX1.5771D5DA-5163-4F6C-A99A-DA682D3F059F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:233f292973f8e23057ccc9708f4419a0e3f03b4e741766215b761156b3efc0da +size 134192956 diff --git a/features/TCGA-4Z-AA7Y-01Z-00-DX1.5771D5DA-5163-4F6C-A99A-DA682D3F059F.svs/mask.npy b/features/TCGA-4Z-AA7Y-01Z-00-DX1.5771D5DA-5163-4F6C-A99A-DA682D3F059F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..167c17c559fec8718ad2b9ddb747e70f63276945 --- /dev/null +++ b/features/TCGA-4Z-AA7Y-01Z-00-DX1.5771D5DA-5163-4F6C-A99A-DA682D3F059F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f1d80376a5a783d5eafd3137665af512e220de6c398d53ab7b4b8d07e2999369 +size 110576048 diff --git a/features/TCGA-4Z-AA7Y-01Z-00-DX1.5771D5DA-5163-4F6C-A99A-DA682D3F059F.svs/metadata.json b/features/TCGA-4Z-AA7Y-01Z-00-DX1.5771D5DA-5163-4F6C-A99A-DA682D3F059F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9fac0808a53c7adbd9f6bdcd8d2205e5f6fd29b4 --- /dev/null +++ b/features/TCGA-4Z-AA7Y-01Z-00-DX1.5771D5DA-5163-4F6C-A99A-DA682D3F059F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16357, "total_number_of_tiles": 16357, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [79680, 88815], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 6], "4": [10, 11], "5": [20, 22], "6": [39, 44], "7": [78, 87], "8": [156, 174], "9": [312, 347], "10": [623, 694], "11": [1245, 1388], "12": [2490, 2776], "13": [4980, 5551], "14": [9960, 11102], "15": [19920, 22204], "16": [39840, 44408], "17": [79680, 88815]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "80fc7488eb663a97b7e8ef1607790d9f"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA80-01Z-00-DX1.303549D2-42A5-46C4-AD9D-D72337B416E5.svs/features.npy b/features/TCGA-4Z-AA80-01Z-00-DX1.303549D2-42A5-46C4-AD9D-D72337B416E5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e15d2e1cdf3c122ce8651c47264f822216075fe4 --- /dev/null +++ b/features/TCGA-4Z-AA80-01Z-00-DX1.303549D2-42A5-46C4-AD9D-D72337B416E5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:278156f407ee94b565c813f0105b8afbc76452fbf148bf7b45b3c3a6e7723621 +size 218341384 diff --git a/features/TCGA-4Z-AA80-01Z-00-DX1.303549D2-42A5-46C4-AD9D-D72337B416E5.svs/mask.npy b/features/TCGA-4Z-AA80-01Z-00-DX1.303549D2-42A5-46C4-AD9D-D72337B416E5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..dc88a48ceae0e12bb1bff477d71f9ee778dd1fde --- /dev/null +++ b/features/TCGA-4Z-AA80-01Z-00-DX1.303549D2-42A5-46C4-AD9D-D72337B416E5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bbd78828027b429a81edf5cc3945075139093f9b5dc20f5f283bb600c4aa23f4 +size 125350444 diff --git a/features/TCGA-4Z-AA80-01Z-00-DX1.303549D2-42A5-46C4-AD9D-D72337B416E5.svs/metadata.json b/features/TCGA-4Z-AA80-01Z-00-DX1.303549D2-42A5-46C4-AD9D-D72337B416E5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7c403fc434b589acf78e6cc2bc557c8d27091ef2 --- /dev/null +++ b/features/TCGA-4Z-AA80-01Z-00-DX1.303549D2-42A5-46C4-AD9D-D72337B416E5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26614, "total_number_of_tiles": 26614, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [89640, 89480], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 11], "5": [22, 22], "6": [44, 44], "7": [88, 88], "8": [176, 175], "9": [351, 350], "10": [701, 700], "11": [1401, 1399], "12": [2802, 2797], "13": [5603, 5593], "14": [11205, 11185], "15": [22410, 22370], "16": [44820, 44740], "17": [89640, 89480]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3467b2c8c3fb0014e36bdbe79120bf79"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA81-01Z-00-DX1.797432E9-56C6-4142-9AA4-233D7C565BF1.svs/features.npy b/features/TCGA-4Z-AA81-01Z-00-DX1.797432E9-56C6-4142-9AA4-233D7C565BF1.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c114859c79fbddf74c63222d574ab22219df44dd --- /dev/null +++ b/features/TCGA-4Z-AA81-01Z-00-DX1.797432E9-56C6-4142-9AA4-233D7C565BF1.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7b3a22c897beae1cbe333de9302be206e346969baf8a045744b7d659832b5152 +size 120869660 diff --git a/features/TCGA-4Z-AA81-01Z-00-DX1.797432E9-56C6-4142-9AA4-233D7C565BF1.svs/mask.npy b/features/TCGA-4Z-AA81-01Z-00-DX1.797432E9-56C6-4142-9AA4-233D7C565BF1.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f514f2ce5e4db1d65b349ea5f9a6ee1c54a977cd --- /dev/null +++ b/features/TCGA-4Z-AA81-01Z-00-DX1.797432E9-56C6-4142-9AA4-233D7C565BF1.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:15a751e9b92facb93352e3dc9a7395ce9c60d33221d59921242c4a29c795fd64 +size 122776652 diff --git a/features/TCGA-4Z-AA81-01Z-00-DX1.797432E9-56C6-4142-9AA4-233D7C565BF1.svs/metadata.json b/features/TCGA-4Z-AA81-01Z-00-DX1.797432E9-56C6-4142-9AA4-233D7C565BF1.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..35fe4c0ea02942244dcb3a30503cf9190644e87e --- /dev/null +++ b/features/TCGA-4Z-AA81-01Z-00-DX1.797432E9-56C6-4142-9AA4-233D7C565BF1.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14733, "total_number_of_tiles": 14733, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97608, 80491], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [24, 20], "6": [48, 40], "7": [96, 79], "8": [191, 158], "9": [382, 315], "10": [763, 629], "11": [1526, 1258], "12": [3051, 2516], "13": [6101, 5031], "14": [12201, 10062], "15": [24402, 20123], "16": [48804, 40246], "17": [97608, 80491]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c3b501703f92471562d1944910b6da75"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.svs/features.npy b/features/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ea8d442d31a685efa3bb4abda480f173db37ef8e --- /dev/null +++ b/features/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a2d4d95298f975cff9d5ef7b84e1838b51d5c46eb818142677dc49b1e6ad9f2 +size 192646456 diff --git a/features/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.svs/mask.npy b/features/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..70513206ffcb7c2b041ae86c43ad51fb082a39f1 --- /dev/null +++ b/features/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cea8a2b2b316797adba2154498a96f7083139b1ea31c45f8a4bbe88c01e949ca +size 136516104 diff --git a/features/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.svs/metadata.json b/features/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..64892f52c4c5f75396b5b3e83bda5eb708dd69dc --- /dev/null +++ b/features/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23482, "total_number_of_tiles": 23482, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97608, 89498], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [24, 22], "6": [48, 44], "7": [96, 88], "8": [191, 175], "9": [382, 350], "10": [763, 700], "11": [1526, 1399], "12": [3051, 2797], "13": [6101, 5594], "14": [12201, 11188], "15": [24402, 22375], "16": [48804, 44749], "17": [97608, 89498]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f18e0257728ff31a482f17d3e52a83b4"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA83-01Z-00-DX1.432ADCAA-36B5-4F9F-B4AE-6D755805FEF5.svs/features.npy b/features/TCGA-4Z-AA83-01Z-00-DX1.432ADCAA-36B5-4F9F-B4AE-6D755805FEF5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..56e17d7baf969ed2730ed21e2e231cb636be4b67 --- /dev/null +++ b/features/TCGA-4Z-AA83-01Z-00-DX1.432ADCAA-36B5-4F9F-B4AE-6D755805FEF5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:13a283533c83e895f7f884b3629c6bc4c0c102d6db5010235ee33b498b924bb2 +size 163973476 diff --git a/features/TCGA-4Z-AA83-01Z-00-DX1.432ADCAA-36B5-4F9F-B4AE-6D755805FEF5.svs/mask.npy b/features/TCGA-4Z-AA83-01Z-00-DX1.432ADCAA-36B5-4F9F-B4AE-6D755805FEF5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6a4611c794b06ecdad05b5d23169746de3f98c4f --- /dev/null +++ b/features/TCGA-4Z-AA83-01Z-00-DX1.432ADCAA-36B5-4F9F-B4AE-6D755805FEF5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:072f73a738959ba4ca2ac70d9b4205ce34401346ba2f0ac9396d327317367b85 +size 109456544 diff --git a/features/TCGA-4Z-AA83-01Z-00-DX1.432ADCAA-36B5-4F9F-B4AE-6D755805FEF5.svs/metadata.json b/features/TCGA-4Z-AA83-01Z-00-DX1.432ADCAA-36B5-4F9F-B4AE-6D755805FEF5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..016d45283a5cbce4085c3608260b63dce49058f9 --- /dev/null +++ b/features/TCGA-4Z-AA83-01Z-00-DX1.432ADCAA-36B5-4F9F-B4AE-6D755805FEF5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19987, "total_number_of_tiles": 19987, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [95616, 73252], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 9], "5": [24, 18], "6": [47, 36], "7": [94, 72], "8": [187, 144], "9": [374, 287], "10": [747, 573], "11": [1494, 1145], "12": [2988, 2290], "13": [5976, 4579], "14": [11952, 9157], "15": [23904, 18313], "16": [47808, 36626], "17": [95616, 73252]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "75bf8a072bb5377a5da9aebb9aebf9ba"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA84-01Z-00-DX1.604B60F3-1E19-4335-9F8D-0D6920B1ACF8.svs/features.npy b/features/TCGA-4Z-AA84-01Z-00-DX1.604B60F3-1E19-4335-9F8D-0D6920B1ACF8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f5e2a68992c2b2f8d2d54899b19d403cb4df2a55 --- /dev/null +++ b/features/TCGA-4Z-AA84-01Z-00-DX1.604B60F3-1E19-4335-9F8D-0D6920B1ACF8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1cd97d9aaa0fe473e1561b80ead088abe614027564765b329f21ea007b499332 +size 172800980 diff --git a/features/TCGA-4Z-AA84-01Z-00-DX1.604B60F3-1E19-4335-9F8D-0D6920B1ACF8.svs/mask.npy b/features/TCGA-4Z-AA84-01Z-00-DX1.604B60F3-1E19-4335-9F8D-0D6920B1ACF8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..33ae410a20030c5894417e6fae89a75aa49ed41d --- /dev/null +++ b/features/TCGA-4Z-AA84-01Z-00-DX1.604B60F3-1E19-4335-9F8D-0D6920B1ACF8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0aeb9dd776be853aa769b851cd257bf514321a675b92c886bbfd5e741d21b131 +size 129590928 diff --git a/features/TCGA-4Z-AA84-01Z-00-DX1.604B60F3-1E19-4335-9F8D-0D6920B1ACF8.svs/metadata.json b/features/TCGA-4Z-AA84-01Z-00-DX1.604B60F3-1E19-4335-9F8D-0D6920B1ACF8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d9992b34e262e6bc7b11973a50a66b6516bfcf12 --- /dev/null +++ b/features/TCGA-4Z-AA84-01Z-00-DX1.604B60F3-1E19-4335-9F8D-0D6920B1ACF8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21063, "total_number_of_tiles": 21063, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101592, 81627], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [25, 20], "6": [50, 40], "7": [100, 80], "8": [199, 160], "9": [397, 319], "10": [794, 638], "11": [1588, 1276], "12": [3175, 2551], "13": [6350, 5102], "14": [12699, 10204], "15": [25398, 20407], "16": [50796, 40814], "17": [101592, 81627]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "117f7625b9920a90a46d6ce614ed5f76"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA86-01Z-00-DX1.C4DC6342-85A3-4F8A-BA6E-B63C554880B4.svs/features.npy b/features/TCGA-4Z-AA86-01Z-00-DX1.C4DC6342-85A3-4F8A-BA6E-B63C554880B4.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..09437e284983ad44db0c9ba571ea9abc71879148 --- /dev/null +++ b/features/TCGA-4Z-AA86-01Z-00-DX1.C4DC6342-85A3-4F8A-BA6E-B63C554880B4.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8054f90bec3c1042404a54dc89eed1e9f33c32d65d55c129932f1822c77c725f +size 131764572 diff --git a/features/TCGA-4Z-AA86-01Z-00-DX1.C4DC6342-85A3-4F8A-BA6E-B63C554880B4.svs/mask.npy b/features/TCGA-4Z-AA86-01Z-00-DX1.C4DC6342-85A3-4F8A-BA6E-B63C554880B4.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4ae125ef53c05b763a5700a0cf11bfe69adeba89 --- /dev/null +++ b/features/TCGA-4Z-AA86-01Z-00-DX1.C4DC6342-85A3-4F8A-BA6E-B63C554880B4.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a0cd9cfb7d95209653bd70a38eb1f42fc239fd53b0c36c79332a6e033aebece3 +size 114188768 diff --git a/features/TCGA-4Z-AA86-01Z-00-DX1.C4DC6342-85A3-4F8A-BA6E-B63C554880B4.svs/metadata.json b/features/TCGA-4Z-AA86-01Z-00-DX1.C4DC6342-85A3-4F8A-BA6E-B63C554880B4.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9fa6b7506e0f15fe017348ababdc5e0abafe00bc --- /dev/null +++ b/features/TCGA-4Z-AA86-01Z-00-DX1.C4DC6342-85A3-4F8A-BA6E-B63C554880B4.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16061, "total_number_of_tiles": 16061, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [81672, 89463], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 6], "4": [10, 11], "5": [20, 22], "6": [40, 44], "7": [80, 88], "8": [160, 175], "9": [320, 350], "10": [639, 699], "11": [1277, 1398], "12": [2553, 2796], "13": [5105, 5592], "14": [10209, 11183], "15": [20418, 22366], "16": [40836, 44732], "17": [81672, 89463]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "54563bcb9038a96e2f6003014efa8f04"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA87-01Z-00-DX1.84170458-631E-49C5-9D7F-70126388ADE3.svs/features.npy b/features/TCGA-4Z-AA87-01Z-00-DX1.84170458-631E-49C5-9D7F-70126388ADE3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f4132a51475220db8defc50904eae961bd4c87ed --- /dev/null +++ b/features/TCGA-4Z-AA87-01Z-00-DX1.84170458-631E-49C5-9D7F-70126388ADE3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:523a60e4f6e6f7b457d974ed1c9ab279b2edfb7a9c016deda264a5467a4a46cb +size 144620240 diff --git a/features/TCGA-4Z-AA87-01Z-00-DX1.84170458-631E-49C5-9D7F-70126388ADE3.svs/mask.npy b/features/TCGA-4Z-AA87-01Z-00-DX1.84170458-631E-49C5-9D7F-70126388ADE3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..af35391e365eb46f8e0bf1cd10bfc823249c899f --- /dev/null +++ b/features/TCGA-4Z-AA87-01Z-00-DX1.84170458-631E-49C5-9D7F-70126388ADE3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5c752f98abe406bf434e4a36176e3bfe80bd1b952979ae3f722bdcccfb0bb365 +size 97489184 diff --git a/features/TCGA-4Z-AA87-01Z-00-DX1.84170458-631E-49C5-9D7F-70126388ADE3.svs/metadata.json b/features/TCGA-4Z-AA87-01Z-00-DX1.84170458-631E-49C5-9D7F-70126388ADE3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4ad8a5d9b78c6a092a1101ee6bffaa735e176548 --- /dev/null +++ b/features/TCGA-4Z-AA87-01Z-00-DX1.84170458-631E-49C5-9D7F-70126388ADE3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17628, "total_number_of_tiles": 17628, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [77688, 80292], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [10, 10], "5": [19, 20], "6": [38, 40], "7": [76, 79], "8": [152, 157], "9": [304, 314], "10": [607, 628], "11": [1214, 1255], "12": [2428, 2510], "13": [4856, 5019], "14": [9711, 10037], "15": [19422, 20073], "16": [38844, 40146], "17": [77688, 80292]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a69a43260938b9c28a52485da6d31505"} \ No newline at end of file diff --git a/features/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.svs/features.npy b/features/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b2b9418f7e3af5543c8a208065b08c9302074025 --- /dev/null +++ b/features/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fc9244a8209f168d06e1dbc277e5fad5ebde32c604666cd8d6e245a212f1a6da +size 226750484 diff --git a/features/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.svs/mask.npy b/features/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e278e8de240e578684303fc2c68b1328976dc6c3 --- /dev/null +++ b/features/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:54cba25c61f582037e43da69ea76a83be5c266925234677dcf9f2f6a4c9bddfd +size 132156328 diff --git a/features/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.svs/metadata.json b/features/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7e16b365b9fcb3b94d4cf72818da2e4e44790cec --- /dev/null +++ b/features/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 27639, "total_number_of_tiles": 27639, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101592, 83233], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [25, 21], "6": [50, 41], "7": [100, 82], "8": [199, 163], "9": [397, 326], "10": [794, 651], "11": [1588, 1301], "12": [3175, 2602], "13": [6350, 5203], "14": [12699, 10405], "15": [25398, 20809], "16": [50796, 41617], "17": [101592, 83233]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7fcf15fb375dfed5a4810f25f43b0c0b"} \ No newline at end of file diff --git a/features/TCGA-5N-A9KI-01Z-00-DX1.1BAE5EFF-859F-4D0A-8DDC-527E2901F7D4.svs/features.npy b/features/TCGA-5N-A9KI-01Z-00-DX1.1BAE5EFF-859F-4D0A-8DDC-527E2901F7D4.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1e36600778863dae1951507f506fa6630038769e --- /dev/null +++ b/features/TCGA-5N-A9KI-01Z-00-DX1.1BAE5EFF-859F-4D0A-8DDC-527E2901F7D4.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f604514d0db67ed96873387f5fb33e4964fe63471df83fe2e3b58c57e619ef9 +size 300389588 diff --git a/features/TCGA-5N-A9KI-01Z-00-DX1.1BAE5EFF-859F-4D0A-8DDC-527E2901F7D4.svs/mask.npy b/features/TCGA-5N-A9KI-01Z-00-DX1.1BAE5EFF-859F-4D0A-8DDC-527E2901F7D4.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b13058f85fa3dfb6d697a46dce77be2c11364cd7 --- /dev/null +++ b/features/TCGA-5N-A9KI-01Z-00-DX1.1BAE5EFF-859F-4D0A-8DDC-527E2901F7D4.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e72da4030549b2f5bf482c30854c7b748f362fd77236b5db2e995e36ab47341e +size 260885632 diff --git a/features/TCGA-5N-A9KI-01Z-00-DX1.1BAE5EFF-859F-4D0A-8DDC-527E2901F7D4.svs/metadata.json b/features/TCGA-5N-A9KI-01Z-00-DX1.1BAE5EFF-859F-4D0A-8DDC-527E2901F7D4.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..26c254e901e11dee80a7c279f6b933bb46672784 --- /dev/null +++ b/features/TCGA-5N-A9KI-01Z-00-DX1.1BAE5EFF-859F-4D0A-8DDC-527E2901F7D4.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 36615, "total_number_of_tiles": 36615, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111872, 149248], "tile_mpp": 0.38896, "level_dimensions": {"0": [1, 1], "1": [1, 2], "2": [2, 3], "3": [4, 5], "4": [7, 10], "5": [14, 19], "6": [28, 37], "7": [55, 73], "8": [110, 146], "9": [219, 292], "10": [437, 583], "11": [874, 1166], "12": [1748, 2332], "13": [3496, 4664], "14": [6992, 9328], "15": [13984, 18656], "16": [27968, 37312], "17": [55936, 74624], "18": [111872, 149248]}, "level_mpp_mapping": {"0": 50981.76512, "1": 25490.88256, "2": 12745.44128, "3": 6372.72064, "4": 3186.36032, "5": 1593.18016, "6": 796.59008, "7": 398.29504, "8": 199.14752, "9": 99.57376, "10": 49.78688, "11": 24.89344, "12": 12.44672, "13": 6.22336, "14": 3.11168, "15": 1.55584, "16": 0.77792, "17": 0.38896, "18": 0.19448}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0215464a97c116bd3eac54fdd06d41a6485ae75fb679d9e318de473d5315c61c"} \ No newline at end of file diff --git a/features/TCGA-5N-A9KM-01Z-00-DX1.5197F750-D17F-459B-B74D-846F5F50F7B7.svs/features.npy b/features/TCGA-5N-A9KM-01Z-00-DX1.5197F750-D17F-459B-B74D-846F5F50F7B7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1990868f82af1c996dd8caa7495f5253096b8fcf --- /dev/null +++ b/features/TCGA-5N-A9KM-01Z-00-DX1.5197F750-D17F-459B-B74D-846F5F50F7B7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e922af712fb46dc2377919a5112ac36efc66e9a051a4ed6b9f4c486c00946e32 +size 91474728 diff --git a/features/TCGA-5N-A9KM-01Z-00-DX1.5197F750-D17F-459B-B74D-846F5F50F7B7.svs/mask.npy b/features/TCGA-5N-A9KM-01Z-00-DX1.5197F750-D17F-459B-B74D-846F5F50F7B7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..302b1a844786186b8ce6fd6434288eb5f37529b8 --- /dev/null +++ b/features/TCGA-5N-A9KM-01Z-00-DX1.5197F750-D17F-459B-B74D-846F5F50F7B7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b31b552438270c01c3c49dfe714e82ab8c2639fe82aeb58ca9b6b10cd0773c79 +size 284267648 diff --git a/features/TCGA-5N-A9KM-01Z-00-DX1.5197F750-D17F-459B-B74D-846F5F50F7B7.svs/metadata.json b/features/TCGA-5N-A9KM-01Z-00-DX1.5197F750-D17F-459B-B74D-846F5F50F7B7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..74a43cb0e21af3e93b905ce745f8d8d2cff7ad8a --- /dev/null +++ b/features/TCGA-5N-A9KM-01Z-00-DX1.5197F750-D17F-459B-B74D-846F5F50F7B7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11150, "total_number_of_tiles": 11150, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119040, 152832], "tile_mpp": 0.38896, "level_dimensions": {"0": [1, 1], "1": [1, 2], "2": [2, 3], "3": [4, 5], "4": [8, 10], "5": [15, 19], "6": [30, 38], "7": [59, 75], "8": [117, 150], "9": [233, 299], "10": [465, 597], "11": [930, 1194], "12": [1860, 2388], "13": [3720, 4776], "14": [7440, 9552], "15": [14880, 19104], "16": [29760, 38208], "17": [59520, 76416], "18": [119040, 152832]}, "level_mpp_mapping": {"0": 50981.76512, "1": 25490.88256, "2": 12745.44128, "3": 6372.72064, "4": 3186.36032, "5": 1593.18016, "6": 796.59008, "7": 398.29504, "8": 199.14752, "9": 99.57376, "10": 49.78688, "11": 24.89344, "12": 12.44672, "13": 6.22336, "14": 3.11168, "15": 1.55584, "16": 0.77792, "17": 0.38896, "18": 0.19448}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9d16759348deffee515ebcceb6bf52d641f7cc280e2ce0fed0959df6d7a198f8"} \ No newline at end of file diff --git a/features/TCGA-BL-A0C8-01Z-00-DX1.E7FC7156-EF0C-4C79-93D1-1345ADB36A45.svs/features.npy b/features/TCGA-BL-A0C8-01Z-00-DX1.E7FC7156-EF0C-4C79-93D1-1345ADB36A45.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f1dfd4a04eeb079b8135861895144109f00d21ef --- /dev/null +++ b/features/TCGA-BL-A0C8-01Z-00-DX1.E7FC7156-EF0C-4C79-93D1-1345ADB36A45.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:15e10f72cdc3c3904516301088f911b7b4c4aff42d7b132e43a20e89939a286c +size 66731464 diff --git a/features/TCGA-BL-A0C8-01Z-00-DX1.E7FC7156-EF0C-4C79-93D1-1345ADB36A45.svs/mask.npy b/features/TCGA-BL-A0C8-01Z-00-DX1.E7FC7156-EF0C-4C79-93D1-1345ADB36A45.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..27b1945c6884979f7bfa95a5a48dd2dbae0939e1 --- /dev/null +++ b/features/TCGA-BL-A0C8-01Z-00-DX1.E7FC7156-EF0C-4C79-93D1-1345ADB36A45.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3a603528f13cbaf014ac0f99d5885854c4196e49069b376c1109cd83289af78b +size 133347600 diff --git a/features/TCGA-BL-A0C8-01Z-00-DX1.E7FC7156-EF0C-4C79-93D1-1345ADB36A45.svs/metadata.json b/features/TCGA-BL-A0C8-01Z-00-DX1.E7FC7156-EF0C-4C79-93D1-1345ADB36A45.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e063e21657eb085f5d52623049169f5348da2479 --- /dev/null +++ b/features/TCGA-BL-A0C8-01Z-00-DX1.E7FC7156-EF0C-4C79-93D1-1345ADB36A45.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 8134, "total_number_of_tiles": 8134, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [122808, 69483], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 9], "5": [30, 17], "6": [60, 34], "7": [120, 68], "8": [240, 136], "9": [480, 272], "10": [960, 543], "11": [1919, 1086], "12": [3838, 2172], "13": [7676, 4343], "14": [15351, 8686], "15": [30702, 17371], "16": [61404, 34742], "17": [122808, 69483]}, "level_mpp_mapping": {"0": 32309.248, "1": 16154.624, "2": 8077.312, "3": 4038.656, "4": 2019.328, "5": 1009.664, "6": 504.832, "7": 252.416, "8": 126.208, "9": 63.104, "10": 31.552, "11": 15.776, "12": 7.888, "13": 3.944, "14": 1.972, "15": 0.986, "16": 0.493, "17": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "877bb5e9583ce6cef5aedda64dcca14ff366c430f22a0b554df75778ebd23814"} \ No newline at end of file diff --git a/features/TCGA-BL-A0C8-01Z-00-DX2.1D788C7B-801F-4957-B1DE-43DCAA82A16A.svs/features.npy b/features/TCGA-BL-A0C8-01Z-00-DX2.1D788C7B-801F-4957-B1DE-43DCAA82A16A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e09a7445bd409d15d9ecb6be06c4638b14ba063e --- /dev/null +++ b/features/TCGA-BL-A0C8-01Z-00-DX2.1D788C7B-801F-4957-B1DE-43DCAA82A16A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d9dace942b3163c3bf85c541b96d6da006d051544c7f1023a17b6788481b23da +size 62046980 diff --git a/features/TCGA-BL-A0C8-01Z-00-DX2.1D788C7B-801F-4957-B1DE-43DCAA82A16A.svs/mask.npy b/features/TCGA-BL-A0C8-01Z-00-DX2.1D788C7B-801F-4957-B1DE-43DCAA82A16A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4b20625b39467298e433052b553a8b46281b429f --- /dev/null +++ b/features/TCGA-BL-A0C8-01Z-00-DX2.1D788C7B-801F-4957-B1DE-43DCAA82A16A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:064cd889fba057399ce2e96fe8b07bb34cf439e9f581e7b28a5e7f5b97c82a27 +size 145763228 diff --git a/features/TCGA-BL-A0C8-01Z-00-DX2.1D788C7B-801F-4957-B1DE-43DCAA82A16A.svs/metadata.json b/features/TCGA-BL-A0C8-01Z-00-DX2.1D788C7B-801F-4957-B1DE-43DCAA82A16A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..964778b8989445d567b0faeb866ec9d8d70b3bd1 --- /dev/null +++ b/features/TCGA-BL-A0C8-01Z-00-DX2.1D788C7B-801F-4957-B1DE-43DCAA82A16A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 7563, "total_number_of_tiles": 7563, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [142800, 65326], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [9, 4], "5": [18, 8], "6": [35, 16], "7": [70, 32], "8": [140, 64], "9": [279, 128], "10": [558, 256], "11": [1116, 511], "12": [2232, 1021], "13": [4463, 2042], "14": [8925, 4083], "15": [17850, 8166], "16": [35700, 16332], "17": [71400, 32663], "18": [142800, 65326]}, "level_mpp_mapping": {"0": 64618.496, "1": 32309.248, "2": 16154.624, "3": 8077.312, "4": 4038.656, "5": 2019.328, "6": 1009.664, "7": 504.832, "8": 252.416, "9": 126.208, "10": 63.104, "11": 31.552, "12": 15.776, "13": 7.888, "14": 3.944, "15": 1.972, "16": 0.986, "17": 0.493, "18": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9640fc81ec12c6dbd7c3e6848b104acdafa2732f207d5c1b044e45708120efe1"} \ No newline at end of file diff --git a/features/TCGA-BL-A13I-01Z-00-DX1.D08284EF-2E42-44FE-A3B9-BEF64076A86E.svs/features.npy b/features/TCGA-BL-A13I-01Z-00-DX1.D08284EF-2E42-44FE-A3B9-BEF64076A86E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..98c7e7c63a3caf6e0d617287e71924f245832ad7 --- /dev/null +++ b/features/TCGA-BL-A13I-01Z-00-DX1.D08284EF-2E42-44FE-A3B9-BEF64076A86E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4aba2141037edd003faee71a0ab23320ce4ff4e731217977cb0acb73c382c03 +size 65681352 diff --git a/features/TCGA-BL-A13I-01Z-00-DX1.D08284EF-2E42-44FE-A3B9-BEF64076A86E.svs/mask.npy b/features/TCGA-BL-A13I-01Z-00-DX1.D08284EF-2E42-44FE-A3B9-BEF64076A86E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ec736ce858e855c4e51b9c3ac6807fae741a3a42 --- /dev/null +++ b/features/TCGA-BL-A13I-01Z-00-DX1.D08284EF-2E42-44FE-A3B9-BEF64076A86E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:34b6e869ac24efdd62bd622741b5fe9dbf7f99d8bd53a332df2a38addeaad499 +size 146852288 diff --git a/features/TCGA-BL-A13I-01Z-00-DX1.D08284EF-2E42-44FE-A3B9-BEF64076A86E.svs/metadata.json b/features/TCGA-BL-A13I-01Z-00-DX1.D08284EF-2E42-44FE-A3B9-BEF64076A86E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..27be7a5012296d795858ef2d753b580dbb9d55b9 --- /dev/null +++ b/features/TCGA-BL-A13I-01Z-00-DX1.D08284EF-2E42-44FE-A3B9-BEF64076A86E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 8006, "total_number_of_tiles": 8006, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107576, 87353], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 22], "6": [53, 43], "7": [106, 86], "8": [211, 171], "9": [421, 342], "10": [841, 683], "11": [1681, 1365], "12": [3362, 2730], "13": [6724, 5460], "14": [13447, 10920], "15": [26894, 21839], "16": [53788, 43677], "17": [107576, 87353]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "44f169f830c85835c1c10068392d8e28949ad95ea25c54b5a0b68a7411a483d5"} \ No newline at end of file diff --git a/features/TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs/features.npy b/features/TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c4b1e18b1aeccbe54a1afc18e446a51961b92962 --- /dev/null +++ b/features/TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bf2cd7ccf8f27a05a160bfa458e90b4a1d4c199017a9fab097598ca08ad9da9a +size 29329428 diff --git a/features/TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs/mask.npy b/features/TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..45390d20a398c26fe62e6e905ce57308d5ee627f --- /dev/null +++ b/features/TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7bdec0416165d903c3db29280c4081dcce29c4f519975834dcff6ec175dc8922 +size 139458608 diff --git a/features/TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs/metadata.json b/features/TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2b76d8fd6a4d71500d845d89d8989ce089c58e4a --- /dev/null +++ b/features/TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 3575, "total_number_of_tiles": 3575, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [114240, 78125], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [28, 20], "6": [56, 39], "7": [112, 77], "8": [224, 153], "9": [447, 306], "10": [893, 611], "11": [1785, 1221], "12": [3570, 2442], "13": [7140, 4883], "14": [14280, 9766], "15": [28560, 19532], "16": [57120, 39063], "17": [114240, 78125]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2d29251de8b4f83a2eb28bbab1644758a18fc173ae0ad904d5f521a12d595dc9"} \ No newline at end of file diff --git a/features/TCGA-BL-A13J-01Z-00-DX1.F2AFDD81-C88A-45EA-AC10-D9B38E878019.svs/features.npy b/features/TCGA-BL-A13J-01Z-00-DX1.F2AFDD81-C88A-45EA-AC10-D9B38E878019.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..831f06e004ea6c02b9a179c039d9b9f08275769f --- /dev/null +++ b/features/TCGA-BL-A13J-01Z-00-DX1.F2AFDD81-C88A-45EA-AC10-D9B38E878019.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:af22ca0a35d3d4891e1920c234c6bc511e56bfacb1e115e1fc6e56352aab6f23 +size 32135196 diff --git a/features/TCGA-BL-A13J-01Z-00-DX1.F2AFDD81-C88A-45EA-AC10-D9B38E878019.svs/mask.npy b/features/TCGA-BL-A13J-01Z-00-DX1.F2AFDD81-C88A-45EA-AC10-D9B38E878019.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ad78f0015e2226f7109f564b0c67766a255a554e --- /dev/null +++ b/features/TCGA-BL-A13J-01Z-00-DX1.F2AFDD81-C88A-45EA-AC10-D9B38E878019.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c664b0062ada13d57027b2a0094d0faa6dcda276815a6b9a854301c3576ddcdf +size 124902528 diff --git a/features/TCGA-BL-A13J-01Z-00-DX1.F2AFDD81-C88A-45EA-AC10-D9B38E878019.svs/metadata.json b/features/TCGA-BL-A13J-01Z-00-DX1.F2AFDD81-C88A-45EA-AC10-D9B38E878019.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..be60b4f9422fe429728a74af9a8724d682d55396 --- /dev/null +++ b/features/TCGA-BL-A13J-01Z-00-DX1.F2AFDD81-C88A-45EA-AC10-D9B38E878019.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 3917, "total_number_of_tiles": 3917, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121856, 65599], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 9], "5": [30, 17], "6": [60, 33], "7": [119, 65], "8": [238, 129], "9": [476, 257], "10": [952, 513], "11": [1904, 1025], "12": [3808, 2050], "13": [7616, 4100], "14": [15232, 8200], "15": [30464, 16400], "16": [60928, 32800], "17": [121856, 65599]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ac52f783003aadb0e99bb5347b39d4dfdabff2bdd308b51b1c83009c885af2b0"} \ No newline at end of file diff --git a/features/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.svs/features.npy b/features/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1025bd677b25c5ab3716ce847268fb75225caeac --- /dev/null +++ b/features/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:689f350e374c693daec4a2a85ed988c5edf90abe4cc8c52aa820bbb265a77092 +size 11707236 diff --git a/features/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.svs/mask.npy b/features/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..00375f067c60d674a7a8544d58ac178fe8312d7a --- /dev/null +++ b/features/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:11e2c5363f4c1c6c5ed1d6ae67fc1a13b284825d402027feae721b5f06ab9a8d +size 14184928 diff --git a/features/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.svs/metadata.json b/features/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..de08e64748289dbdc5c931136b58d665211ecfa4 --- /dev/null +++ b/features/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 1427, "total_number_of_tiles": 1427, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [38080, 23829], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [19, 12], "6": [38, 24], "7": [75, 47], "8": [149, 94], "9": [298, 187], "10": [595, 373], "11": [1190, 745], "12": [2380, 1490], "13": [4760, 2979], "14": [9520, 5958], "15": [19040, 11915], "16": [38080, 23829]}, "level_mpp_mapping": {"0": 16095.6416, "1": 8047.8208, "2": 4023.9104, "3": 2011.9552, "4": 1005.9776, "5": 502.9888, "6": 251.4944, "7": 125.7472, "8": 62.8736, "9": 31.4368, "10": 15.7184, "11": 7.8592, "12": 3.9296, "13": 1.9648, "14": 0.9824, "15": 0.4912, "16": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f45c85d0adac310eb9e261dd057208739fdee9933b6090abc093e0f1c82c1335"} \ No newline at end of file diff --git a/features/TCGA-BL-A3JM-01Z-00-DX1.33E53972-CEA4-4D84-A5D2-7DAD7B0C27F8.svs/features.npy b/features/TCGA-BL-A3JM-01Z-00-DX1.33E53972-CEA4-4D84-A5D2-7DAD7B0C27F8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c61c208fc9a654f69524ce2c7710aea774a6bbf1 --- /dev/null +++ b/features/TCGA-BL-A3JM-01Z-00-DX1.33E53972-CEA4-4D84-A5D2-7DAD7B0C27F8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e4e5bac266904d076416cbbdca72132d299a9d48d977f145c32b8f2812861c9b +size 11764664 diff --git a/features/TCGA-BL-A3JM-01Z-00-DX1.33E53972-CEA4-4D84-A5D2-7DAD7B0C27F8.svs/mask.npy b/features/TCGA-BL-A3JM-01Z-00-DX1.33E53972-CEA4-4D84-A5D2-7DAD7B0C27F8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..147f34d6c2ef35443ae46d9a1b639b078493aac5 --- /dev/null +++ b/features/TCGA-BL-A3JM-01Z-00-DX1.33E53972-CEA4-4D84-A5D2-7DAD7B0C27F8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a54a62d13c190796ea363f93e507a8d569ebda13bd13ee014cfa45cb38ec5cd7 +size 33915128 diff --git a/features/TCGA-BL-A3JM-01Z-00-DX1.33E53972-CEA4-4D84-A5D2-7DAD7B0C27F8.svs/metadata.json b/features/TCGA-BL-A3JM-01Z-00-DX1.33E53972-CEA4-4D84-A5D2-7DAD7B0C27F8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..68329872c1e761c1ac69a68a00272f01c481cb53 --- /dev/null +++ b/features/TCGA-BL-A3JM-01Z-00-DX1.33E53972-CEA4-4D84-A5D2-7DAD7B0C27F8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 1434, "total_number_of_tiles": 1434, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [36176, 59996], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 4], "3": [5, 8], "4": [9, 15], "5": [18, 30], "6": [36, 59], "7": [71, 118], "8": [142, 235], "9": [283, 469], "10": [566, 938], "11": [1131, 1875], "12": [2261, 3750], "13": [4522, 7500], "14": [9044, 14999], "15": [18088, 29998], "16": [36176, 59996]}, "level_mpp_mapping": {"0": 16095.6416, "1": 8047.8208, "2": 4023.9104, "3": 2011.9552, "4": 1005.9776, "5": 502.9888, "6": 251.4944, "7": 125.7472, "8": 62.8736, "9": 31.4368, "10": 15.7184, "11": 7.8592, "12": 3.9296, "13": 1.9648, "14": 0.9824, "15": 0.4912, "16": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "369196e943a680ecc5670dfdd351e27cf81ff541170dac39b8f25f570470b750"} \ No newline at end of file diff --git a/features/TCGA-BL-A5ZZ-01Z-00-DX1.4CF32B22-118E-4570-B341-0F35258329E6.svs/features.npy b/features/TCGA-BL-A5ZZ-01Z-00-DX1.4CF32B22-118E-4570-B341-0F35258329E6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..fa66b6d7daad0eba9192537b6bfe381d92d46f3c --- /dev/null +++ b/features/TCGA-BL-A5ZZ-01Z-00-DX1.4CF32B22-118E-4570-B341-0F35258329E6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fcdc1b69af7894f2477652ee09a1516649f3cd25d67b3e03702b960bdf1c52ca +size 83902436 diff --git a/features/TCGA-BL-A5ZZ-01Z-00-DX1.4CF32B22-118E-4570-B341-0F35258329E6.svs/mask.npy b/features/TCGA-BL-A5ZZ-01Z-00-DX1.4CF32B22-118E-4570-B341-0F35258329E6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..04403f8c9fc5dc70520d344db40ab1f1636400cd --- /dev/null +++ b/features/TCGA-BL-A5ZZ-01Z-00-DX1.4CF32B22-118E-4570-B341-0F35258329E6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:44b67e8cee4248d105aea8ff67606cee447baa80a711dcdba90e96cea9de8d77 +size 122104520 diff --git a/features/TCGA-BL-A5ZZ-01Z-00-DX1.4CF32B22-118E-4570-B341-0F35258329E6.svs/metadata.json b/features/TCGA-BL-A5ZZ-01Z-00-DX1.4CF32B22-118E-4570-B341-0F35258329E6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0f0e96c1458eef0139c04d40a24533b4226dc7a5 --- /dev/null +++ b/features/TCGA-BL-A5ZZ-01Z-00-DX1.4CF32B22-118E-4570-B341-0F35258329E6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10227, "total_number_of_tiles": 10227, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [189448, 41237], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [6, 2], "4": [12, 3], "5": [24, 6], "6": [47, 11], "7": [93, 21], "8": [186, 41], "9": [371, 81], "10": [741, 162], "11": [1481, 323], "12": [2961, 645], "13": [5921, 1289], "14": [11841, 2578], "15": [23681, 5155], "16": [47362, 10310], "17": [94724, 20619], "18": [189448, 41237]}, "level_mpp_mapping": {"0": 64382.5664, "1": 32191.2832, "2": 16095.6416, "3": 8047.8208, "4": 4023.9104, "5": 2011.9552, "6": 1005.9776, "7": 502.9888, "8": 251.4944, "9": 125.7472, "10": 62.8736, "11": 31.4368, "12": 15.7184, "13": 7.8592, "14": 3.9296, "15": 1.9648, "16": 0.9824, "17": 0.4912, "18": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9a23a72743517977efe4e053e6df21531af1e0552ae62667f8e37be30295821a"} \ No newline at end of file diff --git a/features/TCGA-BL-A5ZZ-01Z-00-DX2.BB151354-01C6-43DE-ABCC-0B03468D54FF.svs/features.npy b/features/TCGA-BL-A5ZZ-01Z-00-DX2.BB151354-01C6-43DE-ABCC-0B03468D54FF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2e90aa30b7da1dc13a362002a260d1cb0386fb81 --- /dev/null +++ b/features/TCGA-BL-A5ZZ-01Z-00-DX2.BB151354-01C6-43DE-ABCC-0B03468D54FF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:98b444b41e73e014b17ccace0a88bd232c1972a0f28082c4137ac1786100597c +size 69151644 diff --git a/features/TCGA-BL-A5ZZ-01Z-00-DX2.BB151354-01C6-43DE-ABCC-0B03468D54FF.svs/mask.npy b/features/TCGA-BL-A5ZZ-01Z-00-DX2.BB151354-01C6-43DE-ABCC-0B03468D54FF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e7c0ba1ae5255a20fb111ec519f396a5e4007179 --- /dev/null +++ b/features/TCGA-BL-A5ZZ-01Z-00-DX2.BB151354-01C6-43DE-ABCC-0B03468D54FF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6dd5452fe4f5675ea557c783109521dbf0bffdafe31d5f927d4b2a10b47d8965 +size 119167952 diff --git a/features/TCGA-BL-A5ZZ-01Z-00-DX2.BB151354-01C6-43DE-ABCC-0B03468D54FF.svs/metadata.json b/features/TCGA-BL-A5ZZ-01Z-00-DX2.BB151354-01C6-43DE-ABCC-0B03468D54FF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..08177053f2cfc70df9120bde279d2061ff2ca95b --- /dev/null +++ b/features/TCGA-BL-A5ZZ-01Z-00-DX2.BB151354-01C6-43DE-ABCC-0B03468D54FF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 8429, "total_number_of_tiles": 8429, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [189448, 40247], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [6, 2], "4": [12, 3], "5": [24, 5], "6": [47, 10], "7": [93, 20], "8": [186, 40], "9": [371, 79], "10": [741, 158], "11": [1481, 315], "12": [2961, 629], "13": [5921, 1258], "14": [11841, 2516], "15": [23681, 5031], "16": [47362, 10062], "17": [94724, 20124], "18": [189448, 40247]}, "level_mpp_mapping": {"0": 64382.5664, "1": 32191.2832, "2": 16095.6416, "3": 8047.8208, "4": 4023.9104, "5": 2011.9552, "6": 1005.9776, "7": 502.9888, "8": 251.4944, "9": 125.7472, "10": 62.8736, "11": 31.4368, "12": 15.7184, "13": 7.8592, "14": 3.9296, "15": 1.9648, "16": 0.9824, "17": 0.4912, "18": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3a2b8dbb3973bc77707d22e9ee48338b41c2033a727b7fbdb496cc0f8234fe75"} \ No newline at end of file diff --git a/features/TCGA-BT-A0S7-01Z-00-DX1.32588823-EE4E-4F55-B586-29E8E9D98EDE.svs/features.npy b/features/TCGA-BT-A0S7-01Z-00-DX1.32588823-EE4E-4F55-B586-29E8E9D98EDE.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..351b81a0d5929199d88802b108f80e50c51dec26 --- /dev/null +++ b/features/TCGA-BT-A0S7-01Z-00-DX1.32588823-EE4E-4F55-B586-29E8E9D98EDE.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0021be25e5b8fec2480372279a3caa63b4c1edbe2f5d9b109ffa95bf4799a5f3 +size 259025020 diff --git a/features/TCGA-BT-A0S7-01Z-00-DX1.32588823-EE4E-4F55-B586-29E8E9D98EDE.svs/mask.npy b/features/TCGA-BT-A0S7-01Z-00-DX1.32588823-EE4E-4F55-B586-29E8E9D98EDE.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b0dbcee798a0e680ad0d74d2ff9b9a4c0c462f80 --- /dev/null +++ b/features/TCGA-BT-A0S7-01Z-00-DX1.32588823-EE4E-4F55-B586-29E8E9D98EDE.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9e71d3e3148dc1cdaed9061f7c22a0cd61d6c6581547ade69e01d5a12c34b325 +size 156739804 diff --git a/features/TCGA-BT-A0S7-01Z-00-DX1.32588823-EE4E-4F55-B586-29E8E9D98EDE.svs/metadata.json b/features/TCGA-BT-A0S7-01Z-00-DX1.32588823-EE4E-4F55-B586-29E8E9D98EDE.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9e86cc914d9883c0af34e20ffda903b6c0900240 --- /dev/null +++ b/features/TCGA-BT-A0S7-01Z-00-DX1.32588823-EE4E-4F55-B586-29E8E9D98EDE.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31573, "total_number_of_tiles": 31573, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [110122, 91073], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [54, 45], "7": [108, 89], "8": [216, 178], "9": [431, 356], "10": [861, 712], "11": [1721, 1424], "12": [3442, 2847], "13": [6883, 5693], "14": [13766, 11385], "15": [27531, 22769], "16": [55061, 45537], "17": [110122, 91073]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d7925f58b6049e9636c1482aa94f2cab"} \ No newline at end of file diff --git a/features/TCGA-BT-A0YX-01Z-00-DX1.B28C49EA-BF1C-44D8-B9A0-DC0A6172702E.svs/features.npy b/features/TCGA-BT-A0YX-01Z-00-DX1.B28C49EA-BF1C-44D8-B9A0-DC0A6172702E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..bd09dc0616e120e87a1bd851eaa50cfec45f2b95 --- /dev/null +++ b/features/TCGA-BT-A0YX-01Z-00-DX1.B28C49EA-BF1C-44D8-B9A0-DC0A6172702E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:14dd6b69e0726b94fdb3de6f58b25fc0b86831f219f7e79d43faa6338b5d5d53 +size 188798780 diff --git a/features/TCGA-BT-A0YX-01Z-00-DX1.B28C49EA-BF1C-44D8-B9A0-DC0A6172702E.svs/mask.npy b/features/TCGA-BT-A0YX-01Z-00-DX1.B28C49EA-BF1C-44D8-B9A0-DC0A6172702E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0f86d787be6cc3cfd89fbbe4da265aa69b162df5 --- /dev/null +++ b/features/TCGA-BT-A0YX-01Z-00-DX1.B28C49EA-BF1C-44D8-B9A0-DC0A6172702E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5b7dc94c708cbea2638181ed8b977ff51bcaf3a9525584f29d9768e23cb8bfb4 +size 162535064 diff --git a/features/TCGA-BT-A0YX-01Z-00-DX1.B28C49EA-BF1C-44D8-B9A0-DC0A6172702E.svs/metadata.json b/features/TCGA-BT-A0YX-01Z-00-DX1.B28C49EA-BF1C-44D8-B9A0-DC0A6172702E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..de11a08ff57083d342d5516d212a11f5198f5da8 --- /dev/null +++ b/features/TCGA-BT-A0YX-01Z-00-DX1.B28C49EA-BF1C-44D8-B9A0-DC0A6172702E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23013, "total_number_of_tiles": 23013, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109479, 94998], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 24], "6": [54, 47], "7": [107, 93], "8": [214, 186], "9": [428, 372], "10": [856, 743], "11": [1711, 1485], "12": [3422, 2969], "13": [6843, 5938], "14": [13685, 11875], "15": [27370, 23750], "16": [54740, 47499], "17": [109479, 94998]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "201f9e7a6783acdea77c24e875445099"} \ No newline at end of file diff --git a/features/TCGA-BT-A20J-01Z-00-DX1.EB1BC7DB-9BF1-467D-B897-9BA2130320CB.svs/features.npy b/features/TCGA-BT-A20J-01Z-00-DX1.EB1BC7DB-9BF1-467D-B897-9BA2130320CB.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ba632e1c2373c3c7740922fdd558a7d4492b8ed9 --- /dev/null +++ b/features/TCGA-BT-A20J-01Z-00-DX1.EB1BC7DB-9BF1-467D-B897-9BA2130320CB.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e0f2afd27db695e1cbb6eb25d35e412710e1d9719b41b703a57e0281fff6189e +size 84681816 diff --git a/features/TCGA-BT-A20J-01Z-00-DX1.EB1BC7DB-9BF1-467D-B897-9BA2130320CB.svs/mask.npy b/features/TCGA-BT-A20J-01Z-00-DX1.EB1BC7DB-9BF1-467D-B897-9BA2130320CB.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1f065f0599446876182b6c3d8df583b5d7ebb11a --- /dev/null +++ b/features/TCGA-BT-A20J-01Z-00-DX1.EB1BC7DB-9BF1-467D-B897-9BA2130320CB.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:332767cc84e776ccbcb02f5b84ebb3b9b74a670c2c9586f7ec053df260616599 +size 116136512 diff --git a/features/TCGA-BT-A20J-01Z-00-DX1.EB1BC7DB-9BF1-467D-B897-9BA2130320CB.svs/metadata.json b/features/TCGA-BT-A20J-01Z-00-DX1.EB1BC7DB-9BF1-467D-B897-9BA2130320CB.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9236292dab502d15fe33c5c4328ba1e67f66a0ed --- /dev/null +++ b/features/TCGA-BT-A20J-01Z-00-DX1.EB1BC7DB-9BF1-467D-B897-9BA2130320CB.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10322, "total_number_of_tiles": 10322, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97104, 76531], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [24, 19], "6": [48, 38], "7": [95, 75], "8": [190, 150], "9": [380, 299], "10": [759, 598], "11": [1518, 1196], "12": [3035, 2392], "13": [6069, 4784], "14": [12138, 9567], "15": [24276, 19133], "16": [48552, 38266], "17": [97104, 76531]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e176ebf560328384a8cdb3e23d2d17d4"} \ No newline at end of file diff --git a/features/TCGA-BT-A20N-01Z-00-DX1.0FB9D7FF-BDF5-4768-A6F3-D8D16A899772.svs/features.npy b/features/TCGA-BT-A20N-01Z-00-DX1.0FB9D7FF-BDF5-4768-A6F3-D8D16A899772.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0c737e73abd07fcc47cabf5464f5de83179ce623 --- /dev/null +++ b/features/TCGA-BT-A20N-01Z-00-DX1.0FB9D7FF-BDF5-4768-A6F3-D8D16A899772.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9a3cc3be9dd95adeb43ff784b9a7cd8acb88f361ab579f4d4c320b0f74d20cd8 +size 163899640 diff --git a/features/TCGA-BT-A20N-01Z-00-DX1.0FB9D7FF-BDF5-4768-A6F3-D8D16A899772.svs/mask.npy b/features/TCGA-BT-A20N-01Z-00-DX1.0FB9D7FF-BDF5-4768-A6F3-D8D16A899772.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a15d5a77f5292fa8a5f15cac37c7ad56d66e3fee --- /dev/null +++ b/features/TCGA-BT-A20N-01Z-00-DX1.0FB9D7FF-BDF5-4768-A6F3-D8D16A899772.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ae59557318961a2b8815348217fb8fc6e55f2c17006f868b2ebb2427eddd5e18 +size 156485788 diff --git a/features/TCGA-BT-A20N-01Z-00-DX1.0FB9D7FF-BDF5-4768-A6F3-D8D16A899772.svs/metadata.json b/features/TCGA-BT-A20N-01Z-00-DX1.0FB9D7FF-BDF5-4768-A6F3-D8D16A899772.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bfb3b06e053f18b3fcbec2c71e4c76e6a6d09341 --- /dev/null +++ b/features/TCGA-BT-A20N-01Z-00-DX1.0FB9D7FF-BDF5-4768-A6F3-D8D16A899772.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19978, "total_number_of_tiles": 19978, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105672, 94758], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [26, 24], "6": [52, 47], "7": [104, 93], "8": [207, 186], "9": [413, 371], "10": [826, 741], "11": [1652, 1481], "12": [3303, 2962], "13": [6605, 5923], "14": [13209, 11845], "15": [26418, 23690], "16": [52836, 47379], "17": [105672, 94758]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "039ee2b5cf8bb9bf5336716624ab0fa2"} \ No newline at end of file diff --git a/features/TCGA-BT-A20O-01Z-00-DX1.BD64154E-5CB0-4088-94CC-C48C036E3715.svs/features.npy b/features/TCGA-BT-A20O-01Z-00-DX1.BD64154E-5CB0-4088-94CC-C48C036E3715.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1ed9d3736c20e35742efe1cb7479d5d8b581f915 --- /dev/null +++ b/features/TCGA-BT-A20O-01Z-00-DX1.BD64154E-5CB0-4088-94CC-C48C036E3715.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:36e9e24cb29982b564f53f4a8110986ad50b26d865166af14eb79967c1e47754 +size 115340164 diff --git a/features/TCGA-BT-A20O-01Z-00-DX1.BD64154E-5CB0-4088-94CC-C48C036E3715.svs/mask.npy b/features/TCGA-BT-A20O-01Z-00-DX1.BD64154E-5CB0-4088-94CC-C48C036E3715.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8f66228ae8c0110348fc34dab1ea4cd7068e4fa8 --- /dev/null +++ b/features/TCGA-BT-A20O-01Z-00-DX1.BD64154E-5CB0-4088-94CC-C48C036E3715.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:59b7481f2e93c204ae6e58779f7bcb222f0a7cb32e6d4c4ef65d9595795dd9ee +size 114656628 diff --git a/features/TCGA-BT-A20O-01Z-00-DX1.BD64154E-5CB0-4088-94CC-C48C036E3715.svs/metadata.json b/features/TCGA-BT-A20O-01Z-00-DX1.BD64154E-5CB0-4088-94CC-C48C036E3715.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d77b510f909c3a50f5dd9b58fb81c5ad6c0331c4 --- /dev/null +++ b/features/TCGA-BT-A20O-01Z-00-DX1.BD64154E-5CB0-4088-94CC-C48C036E3715.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14059, "total_number_of_tiles": 14059, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [89488, 81985], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 11], "5": [22, 21], "6": [44, 41], "7": [88, 81], "8": [175, 161], "9": [350, 321], "10": [700, 641], "11": [1399, 1282], "12": [2797, 2563], "13": [5593, 5125], "14": [11186, 10249], "15": [22372, 20497], "16": [44744, 40993], "17": [89488, 81985]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "341ac75f5aafe3b364c7cfeb2473879f"} \ No newline at end of file diff --git a/features/TCGA-BT-A20P-01Z-00-DX1.721A7D6B-C9F3-4A70-8E84-EA2556349AE1.svs/features.npy b/features/TCGA-BT-A20P-01Z-00-DX1.721A7D6B-C9F3-4A70-8E84-EA2556349AE1.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..092790ad890505a0d926efd9c4e5897dbce30969 --- /dev/null +++ b/features/TCGA-BT-A20P-01Z-00-DX1.721A7D6B-C9F3-4A70-8E84-EA2556349AE1.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d723f9594391134b1ec769d47b8a746a6ee7460e554f99aa03b92c013068ddaa +size 155203400 diff --git a/features/TCGA-BT-A20P-01Z-00-DX1.721A7D6B-C9F3-4A70-8E84-EA2556349AE1.svs/mask.npy b/features/TCGA-BT-A20P-01Z-00-DX1.721A7D6B-C9F3-4A70-8E84-EA2556349AE1.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8749a2189279d22ca7f5e184339f4d1ae38dd395 --- /dev/null +++ b/features/TCGA-BT-A20P-01Z-00-DX1.721A7D6B-C9F3-4A70-8E84-EA2556349AE1.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c07bf485008f32ac2be7cf60b8362cf1a81c6262b569524a715a94834905c404 +size 130782080 diff --git a/features/TCGA-BT-A20P-01Z-00-DX1.721A7D6B-C9F3-4A70-8E84-EA2556349AE1.svs/metadata.json b/features/TCGA-BT-A20P-01Z-00-DX1.721A7D6B-C9F3-4A70-8E84-EA2556349AE1.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bb82fae7f0163e19ae92bf1e721250cc95a61bfb --- /dev/null +++ b/features/TCGA-BT-A20P-01Z-00-DX1.721A7D6B-C9F3-4A70-8E84-EA2556349AE1.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18918, "total_number_of_tiles": 18918, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [100912, 82930], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [25, 21], "6": [50, 41], "7": [99, 81], "8": [198, 162], "9": [395, 324], "10": [789, 648], "11": [1577, 1296], "12": [3154, 2592], "13": [6307, 5184], "14": [12614, 10367], "15": [25228, 20733], "16": [50456, 41465], "17": [100912, 82930]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1c6e670f6a1b252a339010eabe8c7a0e"} \ No newline at end of file diff --git a/features/TCGA-BT-A20Q-01Z-00-DX1.BFF3D35C-CB0C-49C3-8D35-D5C84E133B49.svs/features.npy b/features/TCGA-BT-A20Q-01Z-00-DX1.BFF3D35C-CB0C-49C3-8D35-D5C84E133B49.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cf7be2bb9fc065ed7c34e5e90f56fdc5badbf4d5 --- /dev/null +++ b/features/TCGA-BT-A20Q-01Z-00-DX1.BFF3D35C-CB0C-49C3-8D35-D5C84E133B49.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f301542c77f8331b997d514aa68b0cfec15f01e01755a567b3c65720943d744c +size 184590128 diff --git a/features/TCGA-BT-A20Q-01Z-00-DX1.BFF3D35C-CB0C-49C3-8D35-D5C84E133B49.svs/mask.npy b/features/TCGA-BT-A20Q-01Z-00-DX1.BFF3D35C-CB0C-49C3-8D35-D5C84E133B49.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1d734dc1cc03fda429bd4cf9b239d384a5a6e002 --- /dev/null +++ b/features/TCGA-BT-A20Q-01Z-00-DX1.BFF3D35C-CB0C-49C3-8D35-D5C84E133B49.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:08b4fada004a91093abb192343ae0cacbd0dfdf45d0b5294aafeec454ec5ff3b +size 156097664 diff --git a/features/TCGA-BT-A20Q-01Z-00-DX1.BFF3D35C-CB0C-49C3-8D35-D5C84E133B49.svs/metadata.json b/features/TCGA-BT-A20Q-01Z-00-DX1.BFF3D35C-CB0C-49C3-8D35-D5C84E133B49.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..56a48f300e90557c6a6620e1dbeaf9172c8039bc --- /dev/null +++ b/features/TCGA-BT-A20Q-01Z-00-DX1.BFF3D35C-CB0C-49C3-8D35-D5C84E133B49.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22500, "total_number_of_tiles": 22500, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [116144, 86001], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [29, 21], "6": [57, 42], "7": [114, 84], "8": [227, 168], "9": [454, 336], "10": [908, 672], "11": [1815, 1344], "12": [3630, 2688], "13": [7259, 5376], "14": [14518, 10751], "15": [29036, 21501], "16": [58072, 43001], "17": [116144, 86001]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "52c17b38a2c659497dcfadf73f54184a"} \ No newline at end of file diff --git a/features/TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs/features.npy b/features/TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7f19651f59b636b3eb29193688c90cdc5bc60a67 --- /dev/null +++ b/features/TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:24a57d475711135781b03ff11f9c09398aa1c255062e49aecde3e040eb05762b +size 141379660 diff --git a/features/TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs/mask.npy b/features/TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ee16c7ad9c8f7f66c37731878029bd471265b544 --- /dev/null +++ b/features/TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:115866fe46639fce1e1e4704d74477a7f218a4f481d7b9ac14465aa429be0865 +size 125450880 diff --git a/features/TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs/metadata.json b/features/TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..64f9f5e74d4d579f8b154c0676aeba06e3708641 --- /dev/null +++ b/features/TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17233, "total_number_of_tiles": 17233, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [110432, 72699], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 9], "5": [27, 18], "6": [54, 36], "7": [108, 71], "8": [216, 142], "9": [432, 284], "10": [863, 568], "11": [1726, 1136], "12": [3451, 2272], "13": [6902, 4544], "14": [13804, 9088], "15": [27608, 18175], "16": [55216, 36350], "17": [110432, 72699]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ea3b5bcd06b2d6a0d9ef6e81aedbc368"} \ No newline at end of file diff --git a/features/TCGA-BT-A20T-01Z-00-DX1.96460E53-65E0-425F-B079-939D7AA537BE.svs/features.npy b/features/TCGA-BT-A20T-01Z-00-DX1.96460E53-65E0-425F-B079-939D7AA537BE.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..50d2983199238108ea44d7371df20f5fa246715b --- /dev/null +++ b/features/TCGA-BT-A20T-01Z-00-DX1.96460E53-65E0-425F-B079-939D7AA537BE.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1f46a481cccbe6f1767ffc5904f0e54369cc933091ab3ed996c8511b426ce604 +size 149936432 diff --git a/features/TCGA-BT-A20T-01Z-00-DX1.96460E53-65E0-425F-B079-939D7AA537BE.svs/mask.npy b/features/TCGA-BT-A20T-01Z-00-DX1.96460E53-65E0-425F-B079-939D7AA537BE.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..edbb256304463ee31a88fcbe99fc39440cfe5186 --- /dev/null +++ b/features/TCGA-BT-A20T-01Z-00-DX1.96460E53-65E0-425F-B079-939D7AA537BE.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a87ae792371571e05ca7337ed2fdd8f6b724f3f9bbbb7a48fefab1e5f3989d50 +size 134898528 diff --git a/features/TCGA-BT-A20T-01Z-00-DX1.96460E53-65E0-425F-B079-939D7AA537BE.svs/metadata.json b/features/TCGA-BT-A20T-01Z-00-DX1.96460E53-65E0-425F-B079-939D7AA537BE.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..db1588016aac2ae5a6233f6c17ee6e15bfd58d95 --- /dev/null +++ b/features/TCGA-BT-A20T-01Z-00-DX1.96460E53-65E0-425F-B079-939D7AA537BE.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18276, "total_number_of_tiles": 18276, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [95200, 90682], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 12], "5": [24, 23], "6": [47, 45], "7": [93, 89], "8": [186, 178], "9": [372, 355], "10": [744, 709], "11": [1488, 1417], "12": [2975, 2834], "13": [5950, 5668], "14": [11900, 11336], "15": [23800, 22671], "16": [47600, 45341], "17": [95200, 90682]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b05a12a850957f9462a9bdef9fbdeb23"} \ No newline at end of file diff --git a/features/TCGA-BT-A20U-01Z-00-DX1.C2FDF7E9-3391-44E8-9E84-C5EA8EB4AB4C.svs/features.npy b/features/TCGA-BT-A20U-01Z-00-DX1.C2FDF7E9-3391-44E8-9E84-C5EA8EB4AB4C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..59c27983926759ea591603e87c04fc86660323d8 --- /dev/null +++ b/features/TCGA-BT-A20U-01Z-00-DX1.C2FDF7E9-3391-44E8-9E84-C5EA8EB4AB4C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7b4c670596b4cbf55deec672fd568efd345482dace7d4d2c494ccdb0a2e9a6c9 +size 279764732 diff --git a/features/TCGA-BT-A20U-01Z-00-DX1.C2FDF7E9-3391-44E8-9E84-C5EA8EB4AB4C.svs/mask.npy b/features/TCGA-BT-A20U-01Z-00-DX1.C2FDF7E9-3391-44E8-9E84-C5EA8EB4AB4C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a70e46d13fbd3f2b7ba33beee725aa38ed820ea8 --- /dev/null +++ b/features/TCGA-BT-A20U-01Z-00-DX1.C2FDF7E9-3391-44E8-9E84-C5EA8EB4AB4C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4fdf2e4f35a1f4ec27177e199fd6f38c327083bb4744a94a849b50f96c8badec +size 261491204 diff --git a/features/TCGA-BT-A20U-01Z-00-DX1.C2FDF7E9-3391-44E8-9E84-C5EA8EB4AB4C.svs/metadata.json b/features/TCGA-BT-A20U-01Z-00-DX1.C2FDF7E9-3391-44E8-9E84-C5EA8EB4AB4C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c2662b92108b0c6487408ea75d818bad1eaa929e --- /dev/null +++ b/features/TCGA-BT-A20U-01Z-00-DX1.C2FDF7E9-3391-44E8-9E84-C5EA8EB4AB4C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 34101, "total_number_of_tiles": 34101, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [177072, 94498], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [11, 6], "5": [22, 12], "6": [44, 24], "7": [87, 47], "8": [173, 93], "9": [346, 185], "10": [692, 370], "11": [1384, 739], "12": [2767, 1477], "13": [5534, 2954], "14": [11067, 5907], "15": [22134, 11813], "16": [44268, 23625], "17": [88536, 47249], "18": [177072, 94498]}, "level_mpp_mapping": {"0": 64697.1392, "1": 32348.5696, "2": 16174.2848, "3": 8087.1424, "4": 4043.5712, "5": 2021.7856, "6": 1010.8928, "7": 505.4464, "8": 252.7232, "9": 126.3616, "10": 63.1808, "11": 31.5904, "12": 15.7952, "13": 7.8976, "14": 3.9488, "15": 1.9744, "16": 0.9872, "17": 0.4936, "18": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4bece54bc7f8409f48133f54253254c8e474c77319417f3421b0bf49e284b0ac"} \ No newline at end of file diff --git a/features/TCGA-BT-A20W-01Z-00-DX1.26F73765-704B-4D81-923D-F20860A3EFFC.svs/features.npy b/features/TCGA-BT-A20W-01Z-00-DX1.26F73765-704B-4D81-923D-F20860A3EFFC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..746788f435fe97e8193947c8e74dd4a9ccd829e0 --- /dev/null +++ b/features/TCGA-BT-A20W-01Z-00-DX1.26F73765-704B-4D81-923D-F20860A3EFFC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f7c8adafb5b160136ede823f2445902ea312f2451cef041ef5a443e7af6be7c6 +size 180315844 diff --git a/features/TCGA-BT-A20W-01Z-00-DX1.26F73765-704B-4D81-923D-F20860A3EFFC.svs/mask.npy b/features/TCGA-BT-A20W-01Z-00-DX1.26F73765-704B-4D81-923D-F20860A3EFFC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e777a7c891e7eba8ee604993249aaf836df4451c --- /dev/null +++ b/features/TCGA-BT-A20W-01Z-00-DX1.26F73765-704B-4D81-923D-F20860A3EFFC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e128c22601e5e2ccbace1cce7bba8fa369667bf32e576fec55215a16fe457089 +size 167540228 diff --git a/features/TCGA-BT-A20W-01Z-00-DX1.26F73765-704B-4D81-923D-F20860A3EFFC.svs/metadata.json b/features/TCGA-BT-A20W-01Z-00-DX1.26F73765-704B-4D81-923D-F20860A3EFFC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..baaa3db1f8e454a4d0d55b9e017407b62dc6e92c --- /dev/null +++ b/features/TCGA-BT-A20W-01Z-00-DX1.26F73765-704B-4D81-923D-F20860A3EFFC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21979, "total_number_of_tiles": 21979, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123760, 86633], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 22], "6": [61, 43], "7": [121, 85], "8": [242, 170], "9": [484, 339], "10": [967, 677], "11": [1934, 1354], "12": [3868, 2708], "13": [7735, 5415], "14": [15470, 10830], "15": [30940, 21659], "16": [61880, 43317], "17": [123760, 86633]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e0b984ebef0640303f085a55d356e8dd"} \ No newline at end of file diff --git a/features/TCGA-BT-A2LA-01Z-00-DX1.B76379CE-99AB-4598-B55B-0FA800B8DB74.svs/features.npy b/features/TCGA-BT-A2LA-01Z-00-DX1.B76379CE-99AB-4598-B55B-0FA800B8DB74.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1301d3270534b6678a8390efa0d3f38cb45c7102 --- /dev/null +++ b/features/TCGA-BT-A2LA-01Z-00-DX1.B76379CE-99AB-4598-B55B-0FA800B8DB74.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4bd1e17596fc08e4d982002b699ef1f732fc25b72417935d79cd2551ff239e86 +size 133323332 diff --git a/features/TCGA-BT-A2LA-01Z-00-DX1.B76379CE-99AB-4598-B55B-0FA800B8DB74.svs/mask.npy b/features/TCGA-BT-A2LA-01Z-00-DX1.B76379CE-99AB-4598-B55B-0FA800B8DB74.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f1847a6e0201702d4a941bdf62550dca098b1a7a --- /dev/null +++ b/features/TCGA-BT-A2LA-01Z-00-DX1.B76379CE-99AB-4598-B55B-0FA800B8DB74.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:852b60b2e2e2d8adfdaeaaeef9bb3da0b1c60dd24128f6d5e77212c511abadb2 +size 160594436 diff --git a/features/TCGA-BT-A2LA-01Z-00-DX1.B76379CE-99AB-4598-B55B-0FA800B8DB74.svs/metadata.json b/features/TCGA-BT-A2LA-01Z-00-DX1.B76379CE-99AB-4598-B55B-0FA800B8DB74.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9adb8c42fff40efda8c7fa69f1b15af887042b06 --- /dev/null +++ b/features/TCGA-BT-A2LA-01Z-00-DX1.B76379CE-99AB-4598-B55B-0FA800B8DB74.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16251, "total_number_of_tiles": 16251, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [108528, 94698], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 24], "6": [53, 47], "7": [106, 93], "8": [212, 185], "9": [424, 370], "10": [848, 740], "11": [1696, 1480], "12": [3392, 2960], "13": [6783, 5919], "14": [13566, 11838], "15": [27132, 23675], "16": [54264, 47349], "17": [108528, 94698]}, "level_mpp_mapping": {"0": 32309.248, "1": 16154.624, "2": 8077.312, "3": 4038.656, "4": 2019.328, "5": 1009.664, "6": 504.832, "7": 252.416, "8": 126.208, "9": 63.104, "10": 31.552, "11": 15.776, "12": 7.888, "13": 3.944, "14": 1.972, "15": 0.986, "16": 0.493, "17": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "96e427d2c6e397486e4f5935f3833872"} \ No newline at end of file diff --git a/features/TCGA-BT-A2LB-01Z-00-DX1.046294E0-4665-41B8-9B95-1A166163EC99.svs/features.npy b/features/TCGA-BT-A2LB-01Z-00-DX1.046294E0-4665-41B8-9B95-1A166163EC99.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..99a4688a201af5a48469905e3529bda11a76e377 --- /dev/null +++ b/features/TCGA-BT-A2LB-01Z-00-DX1.046294E0-4665-41B8-9B95-1A166163EC99.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:17d78dd283afeb29f5993032c97c5c720a3852c399a016c5c992da9a349f5134 +size 157656396 diff --git a/features/TCGA-BT-A2LB-01Z-00-DX1.046294E0-4665-41B8-9B95-1A166163EC99.svs/mask.npy b/features/TCGA-BT-A2LB-01Z-00-DX1.046294E0-4665-41B8-9B95-1A166163EC99.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a074aacdb1f71ee1a359e2530b8b8a890af7b5ee --- /dev/null +++ b/features/TCGA-BT-A2LB-01Z-00-DX1.046294E0-4665-41B8-9B95-1A166163EC99.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3134a659c840113985ea39af3d2e2b6559ee32b45845e8992e62e50777daf115 +size 155085688 diff --git a/features/TCGA-BT-A2LB-01Z-00-DX1.046294E0-4665-41B8-9B95-1A166163EC99.svs/metadata.json b/features/TCGA-BT-A2LB-01Z-00-DX1.046294E0-4665-41B8-9B95-1A166163EC99.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..46f12802bb4819ea0df9fc4a0249a433c5b8a49d --- /dev/null +++ b/features/TCGA-BT-A2LB-01Z-00-DX1.046294E0-4665-41B8-9B95-1A166163EC99.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19217, "total_number_of_tiles": 19217, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [118048, 84080], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [29, 21], "6": [58, 42], "7": [116, 83], "8": [231, 165], "9": [462, 329], "10": [923, 657], "11": [1845, 1314], "12": [3689, 2628], "13": [7378, 5255], "14": [14756, 10510], "15": [29512, 21020], "16": [59024, 42040], "17": [118048, 84080]}, "level_mpp_mapping": {"0": 32309.248, "1": 16154.624, "2": 8077.312, "3": 4038.656, "4": 2019.328, "5": 1009.664, "6": 504.832, "7": 252.416, "8": 126.208, "9": 63.104, "10": 31.552, "11": 15.776, "12": 7.888, "13": 3.944, "14": 1.972, "15": 0.986, "16": 0.493, "17": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "232bf5255be9f0629e0c319fde3fd127"} \ No newline at end of file diff --git a/features/TCGA-BT-A2LD-01Z-00-DX1.A2AEDD2E-481A-401B-BDD7-5D680B5E36E9.svs/features.npy b/features/TCGA-BT-A2LD-01Z-00-DX1.A2AEDD2E-481A-401B-BDD7-5D680B5E36E9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f03104ce0f4db996c5abe759c195538ddbbb9728 --- /dev/null +++ b/features/TCGA-BT-A2LD-01Z-00-DX1.A2AEDD2E-481A-401B-BDD7-5D680B5E36E9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:327ac3c596172a5b7440b4ae882d859eed2b6997c1f077334bb63b153c421384 +size 141953940 diff --git a/features/TCGA-BT-A2LD-01Z-00-DX1.A2AEDD2E-481A-401B-BDD7-5D680B5E36E9.svs/mask.npy b/features/TCGA-BT-A2LD-01Z-00-DX1.A2AEDD2E-481A-401B-BDD7-5D680B5E36E9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..357bc9872a297a8bac3836f8378f7b9c6c328483 --- /dev/null +++ b/features/TCGA-BT-A2LD-01Z-00-DX1.A2AEDD2E-481A-401B-BDD7-5D680B5E36E9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ca5629edc85905a8bb2c55cdc9e29a77bf283c0149bbd040333724f502de409b +size 144528008 diff --git a/features/TCGA-BT-A2LD-01Z-00-DX1.A2AEDD2E-481A-401B-BDD7-5D680B5E36E9.svs/metadata.json b/features/TCGA-BT-A2LD-01Z-00-DX1.A2AEDD2E-481A-401B-BDD7-5D680B5E36E9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..dfd03b6f5df638da172a9d6930de1a43fe84dd66 --- /dev/null +++ b/features/TCGA-BT-A2LD-01Z-00-DX1.A2AEDD2E-481A-401B-BDD7-5D680B5E36E9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17303, "total_number_of_tiles": 17303, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [110432, 83752], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 21], "6": [54, 41], "7": [108, 82], "8": [216, 164], "9": [432, 328], "10": [863, 655], "11": [1726, 1309], "12": [3451, 2618], "13": [6902, 5235], "14": [13804, 10469], "15": [27608, 20938], "16": [55216, 41876], "17": [110432, 83752]}, "level_mpp_mapping": {"0": 32309.248, "1": 16154.624, "2": 8077.312, "3": 4038.656, "4": 2019.328, "5": 1009.664, "6": 504.832, "7": 252.416, "8": 126.208, "9": 63.104, "10": 31.552, "11": 15.776, "12": 7.888, "13": 3.944, "14": 1.972, "15": 0.986, "16": 0.493, "17": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b3f514e373d4a1abbc6da55668cdd896"} \ No newline at end of file diff --git a/features/TCGA-BT-A3PH-01Z-00-DX1.18FB196C-9F66-4676-81DC-F58A0A5577D8.svs/features.npy b/features/TCGA-BT-A3PH-01Z-00-DX1.18FB196C-9F66-4676-81DC-F58A0A5577D8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6b95a12433cd34693d1d9bb164ef10c9a126ab68 --- /dev/null +++ b/features/TCGA-BT-A3PH-01Z-00-DX1.18FB196C-9F66-4676-81DC-F58A0A5577D8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:124d7bcdad3f13a9ca1a5537a13941d870303dc3172f304d5e12504df037b023 +size 95757216 diff --git a/features/TCGA-BT-A3PH-01Z-00-DX1.18FB196C-9F66-4676-81DC-F58A0A5577D8.svs/mask.npy b/features/TCGA-BT-A3PH-01Z-00-DX1.18FB196C-9F66-4676-81DC-F58A0A5577D8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a39906e4502d6e941309063e8b9bbfb0bd238716 --- /dev/null +++ b/features/TCGA-BT-A3PH-01Z-00-DX1.18FB196C-9F66-4676-81DC-F58A0A5577D8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b81a1cd0a034f19860a7bfefa41e65dbca8c7c42000dbf8d1c3feeddbfd5b46a +size 92684468 diff --git a/features/TCGA-BT-A3PH-01Z-00-DX1.18FB196C-9F66-4676-81DC-F58A0A5577D8.svs/metadata.json b/features/TCGA-BT-A3PH-01Z-00-DX1.18FB196C-9F66-4676-81DC-F58A0A5577D8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ea01fb787babfe9bc90b2c5f7bf2a35a4ed5bf6a --- /dev/null +++ b/features/TCGA-BT-A3PH-01Z-00-DX1.18FB196C-9F66-4676-81DC-F58A0A5577D8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11672, "total_number_of_tiles": 11672, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [85679, 69224], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 9], "5": [21, 17], "6": [42, 34], "7": [84, 68], "8": [168, 136], "9": [335, 271], "10": [670, 541], "11": [1339, 1082], "12": [2678, 2164], "13": [5355, 4327], "14": [10710, 8653], "15": [21420, 17306], "16": [42840, 34612], "17": [85679, 69224]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e8b3f573642f01aaa12130f81bcf5b8ddd7c130e809834fb7d2c939e96aa8071"} \ No newline at end of file diff --git a/features/TCGA-BT-A3PJ-01Z-00-DX1.C730AD35-81DF-4758-97B5-1E9F58E67A2B.svs/features.npy b/features/TCGA-BT-A3PJ-01Z-00-DX1.C730AD35-81DF-4758-97B5-1E9F58E67A2B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a19c07ee59ca6eec469e06b8276af1b9a181049c --- /dev/null +++ b/features/TCGA-BT-A3PJ-01Z-00-DX1.C730AD35-81DF-4758-97B5-1E9F58E67A2B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:98c38a3126b3e6e8134c50027ea1e4e92a73ef6f5ed4d80cce23073ea93a50de +size 202704560 diff --git a/features/TCGA-BT-A3PJ-01Z-00-DX1.C730AD35-81DF-4758-97B5-1E9F58E67A2B.svs/mask.npy b/features/TCGA-BT-A3PJ-01Z-00-DX1.C730AD35-81DF-4758-97B5-1E9F58E67A2B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3619d28b9201e292317e0ee840254072616718a0 --- /dev/null +++ b/features/TCGA-BT-A3PJ-01Z-00-DX1.C730AD35-81DF-4758-97B5-1E9F58E67A2B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6b693200d6cf59c08a0aff416e8648e565552db9904041672662dd72d61ae232 +size 126736376 diff --git a/features/TCGA-BT-A3PJ-01Z-00-DX1.C730AD35-81DF-4758-97B5-1E9F58E67A2B.svs/metadata.json b/features/TCGA-BT-A3PJ-01Z-00-DX1.C730AD35-81DF-4758-97B5-1E9F58E67A2B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0e14773e969e278131392158e6436515ba09f8e7 --- /dev/null +++ b/features/TCGA-BT-A3PJ-01Z-00-DX1.C730AD35-81DF-4758-97B5-1E9F58E67A2B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24708, "total_number_of_tiles": 24708, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111384, 72806], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 9], "5": [28, 18], "6": [55, 36], "7": [109, 72], "8": [218, 143], "9": [436, 285], "10": [871, 569], "11": [1741, 1138], "12": [3481, 2276], "13": [6962, 4551], "14": [13923, 9101], "15": [27846, 18202], "16": [55692, 36403], "17": [111384, 72806]}, "level_mpp_mapping": {"0": 32309.248, "1": 16154.624, "2": 8077.312, "3": 4038.656, "4": 2019.328, "5": 1009.664, "6": 504.832, "7": 252.416, "8": 126.208, "9": 63.104, "10": 31.552, "11": 15.776, "12": 7.888, "13": 3.944, "14": 1.972, "15": 0.986, "16": 0.493, "17": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "311be48f71856f52ac98d1aca06e1013"} \ No newline at end of file diff --git a/features/TCGA-BT-A3PK-01Z-00-DX1.0C10EB75-B766-47DB-8BD0-853F81074355.svs/features.npy b/features/TCGA-BT-A3PK-01Z-00-DX1.0C10EB75-B766-47DB-8BD0-853F81074355.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cd36e0bab42796e9f22f02e58d54d8fc1d67ad06 --- /dev/null +++ b/features/TCGA-BT-A3PK-01Z-00-DX1.0C10EB75-B766-47DB-8BD0-853F81074355.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:239f5d330ea06e866492cbf157f9beb984813a971eecbccc9fb31d32233ee359 +size 239417460 diff --git a/features/TCGA-BT-A3PK-01Z-00-DX1.0C10EB75-B766-47DB-8BD0-853F81074355.svs/mask.npy b/features/TCGA-BT-A3PK-01Z-00-DX1.0C10EB75-B766-47DB-8BD0-853F81074355.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..59552021eb14748593bcc7082df36e9728ed805b --- /dev/null +++ b/features/TCGA-BT-A3PK-01Z-00-DX1.0C10EB75-B766-47DB-8BD0-853F81074355.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:59f2a183fa5bcbd90d4df6e244b671a003ec36976dd418cf3bddb7404a9f293d +size 172154572 diff --git a/features/TCGA-BT-A3PK-01Z-00-DX1.0C10EB75-B766-47DB-8BD0-853F81074355.svs/metadata.json b/features/TCGA-BT-A3PK-01Z-00-DX1.0C10EB75-B766-47DB-8BD0-853F81074355.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c9ee1b913654410c7e642cc5db75b5bd416bb2bd --- /dev/null +++ b/features/TCGA-BT-A3PK-01Z-00-DX1.0C10EB75-B766-47DB-8BD0-853F81074355.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29183, "total_number_of_tiles": 29183, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [116143, 94850], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 24], "6": [57, 47], "7": [114, 93], "8": [227, 186], "9": [454, 371], "10": [908, 742], "11": [1815, 1483], "12": [3630, 2965], "13": [7259, 5929], "14": [14518, 11857], "15": [29036, 23713], "16": [58072, 47425], "17": [116143, 94850]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "64068845d1ccc778694a34090c3a7006"} \ No newline at end of file diff --git a/features/TCGA-BT-A42B-01Z-00-DX1.00FCBDE2-728B-4024-A515-64A366DAB307.svs/features.npy b/features/TCGA-BT-A42B-01Z-00-DX1.00FCBDE2-728B-4024-A515-64A366DAB307.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ff6fbadf57a35cdb63338ecb6bd38cb85da9241c --- /dev/null +++ b/features/TCGA-BT-A42B-01Z-00-DX1.00FCBDE2-728B-4024-A515-64A366DAB307.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ddcbf1234079c13c9c9feeafa052d0c390265d37dea3f7407c78e733e0b028f +size 176115396 diff --git a/features/TCGA-BT-A42B-01Z-00-DX1.00FCBDE2-728B-4024-A515-64A366DAB307.svs/mask.npy b/features/TCGA-BT-A42B-01Z-00-DX1.00FCBDE2-728B-4024-A515-64A366DAB307.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0d5346c3861fb763b30a5ba1c2e4223a7c35784d --- /dev/null +++ b/features/TCGA-BT-A42B-01Z-00-DX1.00FCBDE2-728B-4024-A515-64A366DAB307.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9a332db9a7ef043e21deb84f2f001fea36367f9aa46f423c38c63c8c20dc909c +size 168496036 diff --git a/features/TCGA-BT-A42B-01Z-00-DX1.00FCBDE2-728B-4024-A515-64A366DAB307.svs/metadata.json b/features/TCGA-BT-A42B-01Z-00-DX1.00FCBDE2-728B-4024-A515-64A366DAB307.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0eae1373848c74e2ef17c0a788db84c3a808bd85 --- /dev/null +++ b/features/TCGA-BT-A42B-01Z-00-DX1.00FCBDE2-728B-4024-A515-64A366DAB307.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21467, "total_number_of_tiles": 21467, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [116144, 92834], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 23], "6": [57, 46], "7": [114, 91], "8": [227, 182], "9": [454, 363], "10": [908, 726], "11": [1815, 1451], "12": [3630, 2902], "13": [7259, 5803], "14": [14518, 11605], "15": [29036, 23209], "16": [58072, 46417], "17": [116144, 92834]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "871de9843ea2d157e30ba381a1798c4a"} \ No newline at end of file diff --git a/features/TCGA-BT-A42C-01Z-00-DX1.49949E15-B218-4E43-947C-5D73B87B1CA9.svs/features.npy b/features/TCGA-BT-A42C-01Z-00-DX1.49949E15-B218-4E43-947C-5D73B87B1CA9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..67e6c7003284e4f99341272bb0b03b16440391f1 --- /dev/null +++ b/features/TCGA-BT-A42C-01Z-00-DX1.49949E15-B218-4E43-947C-5D73B87B1CA9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1288a00535107dd6c3849ba57725de67fa36135a909c4842fe18dd22aab2e951 +size 126973436 diff --git a/features/TCGA-BT-A42C-01Z-00-DX1.49949E15-B218-4E43-947C-5D73B87B1CA9.svs/mask.npy b/features/TCGA-BT-A42C-01Z-00-DX1.49949E15-B218-4E43-947C-5D73B87B1CA9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f6337f6917102e76871bf0c4430cbfcc5ad1ee71 --- /dev/null +++ b/features/TCGA-BT-A42C-01Z-00-DX1.49949E15-B218-4E43-947C-5D73B87B1CA9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5b8fadfeabbdc63b58966dbb4f0cd3808001511b430651c2dab012265b52ddf7 +size 124367232 diff --git a/features/TCGA-BT-A42C-01Z-00-DX1.49949E15-B218-4E43-947C-5D73B87B1CA9.svs/metadata.json b/features/TCGA-BT-A42C-01Z-00-DX1.49949E15-B218-4E43-947C-5D73B87B1CA9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e74734e07c899a18af7de7a8f67ed75505169b03 --- /dev/null +++ b/features/TCGA-BT-A42C-01Z-00-DX1.49949E15-B218-4E43-947C-5D73B87B1CA9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15477, "total_number_of_tiles": 15477, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107576, 73973], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 19], "6": [53, 37], "7": [106, 73], "8": [211, 145], "9": [421, 289], "10": [841, 578], "11": [1681, 1156], "12": [3362, 2312], "13": [6724, 4624], "14": [13447, 9247], "15": [26894, 18494], "16": [53788, 36987], "17": [107576, 73973]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bf2e46f799c7d6ccade1d9d054741cbd"} \ No newline at end of file diff --git a/features/TCGA-BT-A42E-01Z-00-DX1.7DAF02FF-70D0-412D-8EE3-03AC04E83300.svs/features.npy b/features/TCGA-BT-A42E-01Z-00-DX1.7DAF02FF-70D0-412D-8EE3-03AC04E83300.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4d4b21a3bc6234ec3bcb8db00419f18c3535db63 --- /dev/null +++ b/features/TCGA-BT-A42E-01Z-00-DX1.7DAF02FF-70D0-412D-8EE3-03AC04E83300.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7ec6922574cd908cb5f02c6a4a290c592fba95342d15e865378a8d4cabc6dcc7 +size 160634448 diff --git a/features/TCGA-BT-A42E-01Z-00-DX1.7DAF02FF-70D0-412D-8EE3-03AC04E83300.svs/mask.npy b/features/TCGA-BT-A42E-01Z-00-DX1.7DAF02FF-70D0-412D-8EE3-03AC04E83300.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..79d58949a84fd01e6044c87af9c78d58a5eb2f3f --- /dev/null +++ b/features/TCGA-BT-A42E-01Z-00-DX1.7DAF02FF-70D0-412D-8EE3-03AC04E83300.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a278fe902c5411d731e30d9e73b01cd5b9fc7e704cd9fbfd1106c2dd09c049f5 +size 115350160 diff --git a/features/TCGA-BT-A42E-01Z-00-DX1.7DAF02FF-70D0-412D-8EE3-03AC04E83300.svs/metadata.json b/features/TCGA-BT-A42E-01Z-00-DX1.7DAF02FF-70D0-412D-8EE3-03AC04E83300.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..82478adcd5edb7adc092b4e2d07fc961e6e43f44 --- /dev/null +++ b/features/TCGA-BT-A42E-01Z-00-DX1.7DAF02FF-70D0-412D-8EE3-03AC04E83300.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19580, "total_number_of_tiles": 19580, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [89488, 82494], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 11], "5": [22, 21], "6": [44, 41], "7": [88, 81], "8": [175, 162], "9": [350, 323], "10": [700, 645], "11": [1399, 1289], "12": [2797, 2578], "13": [5593, 5156], "14": [11186, 10312], "15": [22372, 20624], "16": [44744, 41247], "17": [89488, 82494]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "fd1a85a3bcb66a3f9a753bc1ff0793b0"} \ No newline at end of file diff --git a/features/TCGA-BT-A42F-01Z-00-DX1.B934B6A1-C16E-4796-A297-9E92DD74763F.svs/features.npy b/features/TCGA-BT-A42F-01Z-00-DX1.B934B6A1-C16E-4796-A297-9E92DD74763F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..370ee953ce0bf92f8e300718e6b2f471bff92207 --- /dev/null +++ b/features/TCGA-BT-A42F-01Z-00-DX1.B934B6A1-C16E-4796-A297-9E92DD74763F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cb9ebde56c9c52e4d1f7474863ccf6c538c24ee1f3a836a54f167b5f3cb41b45 +size 119712896 diff --git a/features/TCGA-BT-A42F-01Z-00-DX1.B934B6A1-C16E-4796-A297-9E92DD74763F.svs/mask.npy b/features/TCGA-BT-A42F-01Z-00-DX1.B934B6A1-C16E-4796-A297-9E92DD74763F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5691184db33d8f7eaabb8af7a1127541cbb094bd --- /dev/null +++ b/features/TCGA-BT-A42F-01Z-00-DX1.B934B6A1-C16E-4796-A297-9E92DD74763F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:93983187cc450c8d1c42fcae445f166bda6d6edbb997df456af2363ccc782513 +size 171258264 diff --git a/features/TCGA-BT-A42F-01Z-00-DX1.B934B6A1-C16E-4796-A297-9E92DD74763F.svs/metadata.json b/features/TCGA-BT-A42F-01Z-00-DX1.B934B6A1-C16E-4796-A297-9E92DD74763F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8c642def7c9696b432b324d7d0dea73758c1e400 --- /dev/null +++ b/features/TCGA-BT-A42F-01Z-00-DX1.B934B6A1-C16E-4796-A297-9E92DD74763F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14592, "total_number_of_tiles": 14592, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [118048, 92842], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 23], "6": [58, 46], "7": [116, 91], "8": [231, 182], "9": [462, 363], "10": [923, 726], "11": [1845, 1451], "12": [3689, 2902], "13": [7378, 5803], "14": [14756, 11606], "15": [29512, 23211], "16": [59024, 46421], "17": [118048, 92842]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3da22fd051d97dc5aa235741545c6cd4"} \ No newline at end of file diff --git a/features/TCGA-C4-A0EZ-01Z-00-DX1.993A12F0-9687-4E56-B887-13C9453A7E63.svs/features.npy b/features/TCGA-C4-A0EZ-01Z-00-DX1.993A12F0-9687-4E56-B887-13C9453A7E63.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..169bb17de2126cc0c40ee983dfdac3f90a49df46 --- /dev/null +++ b/features/TCGA-C4-A0EZ-01Z-00-DX1.993A12F0-9687-4E56-B887-13C9453A7E63.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:acbbc66f79bbe7b88e33913520b7c8f0e89508ffb38ab7f38cc8ad7dfe13d1d4 +size 32348500 diff --git a/features/TCGA-C4-A0EZ-01Z-00-DX1.993A12F0-9687-4E56-B887-13C9453A7E63.svs/mask.npy b/features/TCGA-C4-A0EZ-01Z-00-DX1.993A12F0-9687-4E56-B887-13C9453A7E63.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ceb189338619224a19366f9ed377cbcd1afce3bf --- /dev/null +++ b/features/TCGA-C4-A0EZ-01Z-00-DX1.993A12F0-9687-4E56-B887-13C9453A7E63.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:019bce3316c08c6c9ae5cd999d0d8ecf2c1a592e083001ad10d174d77e2bcebb +size 28359808 diff --git a/features/TCGA-C4-A0EZ-01Z-00-DX1.993A12F0-9687-4E56-B887-13C9453A7E63.svs/metadata.json b/features/TCGA-C4-A0EZ-01Z-00-DX1.993A12F0-9687-4E56-B887-13C9453A7E63.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e90005b19e382f46bb796228c7c6a3595d8b9c4b --- /dev/null +++ b/features/TCGA-C4-A0EZ-01Z-00-DX1.993A12F0-9687-4E56-B887-13C9453A7E63.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 3943, "total_number_of_tiles": 3943, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [37120, 48896], "tile_mpp": 0.465, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 6], "4": [10, 12], "5": [19, 24], "6": [37, 48], "7": [73, 96], "8": [145, 191], "9": [290, 382], "10": [580, 764], "11": [1160, 1528], "12": [2320, 3056], "13": [4640, 6112], "14": [9280, 12224], "15": [18560, 24448], "16": [37120, 48896]}, "level_mpp_mapping": {"0": 15237.12, "1": 7618.56, "2": 3809.28, "3": 1904.64, "4": 952.32, "5": 476.16, "6": 238.08, "7": 119.04, "8": 59.52, "9": 29.76, "10": 14.88, "11": 7.44, "12": 3.72, "13": 1.86, "14": 0.93, "15": 0.465, "16": 0.2325}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "70cbab0944b6e8542d3c227fdbb6e3b7"} \ No newline at end of file diff --git a/features/TCGA-C4-A0F0-01Z-00-DX1.8EBBC2EF-DA6F-4901-838D-C1AC80E83E92.svs/features.npy b/features/TCGA-C4-A0F0-01Z-00-DX1.8EBBC2EF-DA6F-4901-838D-C1AC80E83E92.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..534c9cb959cde426330efb5a8c16d2221d437247 --- /dev/null +++ b/features/TCGA-C4-A0F0-01Z-00-DX1.8EBBC2EF-DA6F-4901-838D-C1AC80E83E92.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a804505bd3b5048f93ae8f4bcd7e6526e4c6dd6d6788fc230edbffd801cb2013 +size 42923456 diff --git a/features/TCGA-C4-A0F0-01Z-00-DX1.8EBBC2EF-DA6F-4901-838D-C1AC80E83E92.svs/mask.npy b/features/TCGA-C4-A0F0-01Z-00-DX1.8EBBC2EF-DA6F-4901-838D-C1AC80E83E92.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8c51b3b11d85f8c573498e3f23920e8652b66353 --- /dev/null +++ b/features/TCGA-C4-A0F0-01Z-00-DX1.8EBBC2EF-DA6F-4901-838D-C1AC80E83E92.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:21a1b2806f1208e4152bfca912966c69a059c452280660232e642342043b8ba4 +size 49210496 diff --git a/features/TCGA-C4-A0F0-01Z-00-DX1.8EBBC2EF-DA6F-4901-838D-C1AC80E83E92.svs/metadata.json b/features/TCGA-C4-A0F0-01Z-00-DX1.8EBBC2EF-DA6F-4901-838D-C1AC80E83E92.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c52ebd366c22dcdabbfece5b2b4f4febc4bc1f48 --- /dev/null +++ b/features/TCGA-C4-A0F0-01Z-00-DX1.8EBBC2EF-DA6F-4901-838D-C1AC80E83E92.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 5232, "total_number_of_tiles": 5232, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [49408, 63744], "tile_mpp": 0.465, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 4], "3": [7, 8], "4": [13, 16], "5": [25, 32], "6": [49, 63], "7": [97, 125], "8": [193, 249], "9": [386, 498], "10": [772, 996], "11": [1544, 1992], "12": [3088, 3984], "13": [6176, 7968], "14": [12352, 15936], "15": [24704, 31872], "16": [49408, 63744]}, "level_mpp_mapping": {"0": 15237.12, "1": 7618.56, "2": 3809.28, "3": 1904.64, "4": 952.32, "5": 476.16, "6": 238.08, "7": 119.04, "8": 59.52, "9": 29.76, "10": 14.88, "11": 7.44, "12": 3.72, "13": 1.86, "14": 0.93, "15": 0.465, "16": 0.2325}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "beac494873eaec0190b7811643789ebeb008b93f79263ea01cfe1ec2697411f0"} \ No newline at end of file diff --git a/features/TCGA-C4-A0F1-01Z-00-DX1.C29436CC-B584-4898-8168-97B5552B1B24.svs/features.npy b/features/TCGA-C4-A0F1-01Z-00-DX1.C29436CC-B584-4898-8168-97B5552B1B24.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..51c9e94cde3ff7cf0fcfbb63565079820dfec441 --- /dev/null +++ b/features/TCGA-C4-A0F1-01Z-00-DX1.C29436CC-B584-4898-8168-97B5552B1B24.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e6cb08e3ac951dcb15589cffd5fcb44cf244c236cf3cd21060c42cca8b84d013 +size 63695984 diff --git a/features/TCGA-C4-A0F1-01Z-00-DX1.C29436CC-B584-4898-8168-97B5552B1B24.svs/mask.npy b/features/TCGA-C4-A0F1-01Z-00-DX1.C29436CC-B584-4898-8168-97B5552B1B24.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1ed021bcdbb18b50e9476a48d8dab3d20e119e7e --- /dev/null +++ b/features/TCGA-C4-A0F1-01Z-00-DX1.C29436CC-B584-4898-8168-97B5552B1B24.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8a7440cf5174ea1e0a46a505633ef631e53bdf0b20472d4cb8e639202cceacc7 +size 101910656 diff --git a/features/TCGA-C4-A0F1-01Z-00-DX1.C29436CC-B584-4898-8168-97B5552B1B24.svs/metadata.json b/features/TCGA-C4-A0F1-01Z-00-DX1.C29436CC-B584-4898-8168-97B5552B1B24.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..321f397d3c8cbb2ea725dc375b4a3ad777e01384 --- /dev/null +++ b/features/TCGA-C4-A0F1-01Z-00-DX1.C29436CC-B584-4898-8168-97B5552B1B24.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 7764, "total_number_of_tiles": 7764, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [87552, 74496], "tile_mpp": 0.465, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 10], "5": [22, 19], "6": [43, 37], "7": [86, 73], "8": [171, 146], "9": [342, 291], "10": [684, 582], "11": [1368, 1164], "12": [2736, 2328], "13": [5472, 4656], "14": [10944, 9312], "15": [21888, 18624], "16": [43776, 37248], "17": [87552, 74496]}, "level_mpp_mapping": {"0": 30474.24, "1": 15237.12, "2": 7618.56, "3": 3809.28, "4": 1904.64, "5": 952.32, "6": 476.16, "7": 238.08, "8": 119.04, "9": 59.52, "10": 29.76, "11": 14.88, "12": 7.44, "13": 3.72, "14": 1.86, "15": 0.93, "16": 0.465, "17": 0.2325}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b39d62958fbdae04eebc41a2cbc9fd1af9fa248fa8927c5a4f7f1899aac4717c"} \ No newline at end of file diff --git a/features/TCGA-C4-A0F6-01Z-00-DX1.05FAB26A-4BE9-42B4-95F0-6BD15EBE8792.svs/features.npy b/features/TCGA-C4-A0F6-01Z-00-DX1.05FAB26A-4BE9-42B4-95F0-6BD15EBE8792.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a181579f08913110db8016731032c559d75e0cda --- /dev/null +++ b/features/TCGA-C4-A0F6-01Z-00-DX1.05FAB26A-4BE9-42B4-95F0-6BD15EBE8792.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7d600e14c88be422439a0130c55b1541503db141e4006f0213137d6d96e99278 +size 17786400 diff --git a/features/TCGA-C4-A0F6-01Z-00-DX1.05FAB26A-4BE9-42B4-95F0-6BD15EBE8792.svs/mask.npy b/features/TCGA-C4-A0F6-01Z-00-DX1.05FAB26A-4BE9-42B4-95F0-6BD15EBE8792.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7603cff3188c0b45c70ed4960ca598fd694bd58b --- /dev/null +++ b/features/TCGA-C4-A0F6-01Z-00-DX1.05FAB26A-4BE9-42B4-95F0-6BD15EBE8792.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:66b8b79678f61ace766f2fc3518fd5ca87ff3630ab12ca913c849cd2821fa10e +size 23905408 diff --git a/features/TCGA-C4-A0F6-01Z-00-DX1.05FAB26A-4BE9-42B4-95F0-6BD15EBE8792.svs/metadata.json b/features/TCGA-C4-A0F6-01Z-00-DX1.05FAB26A-4BE9-42B4-95F0-6BD15EBE8792.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2c333a8499171ee4436f9d9d57ced34e9de6a625 --- /dev/null +++ b/features/TCGA-C4-A0F6-01Z-00-DX1.05FAB26A-4BE9-42B4-95F0-6BD15EBE8792.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 2168, "total_number_of_tiles": 2168, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [29440, 51968], "tile_mpp": 0.465, "level_dimensions": {"0": [1, 1], "1": [1, 2], "2": [2, 4], "3": [4, 7], "4": [8, 13], "5": [15, 26], "6": [29, 51], "7": [58, 102], "8": [115, 203], "9": [230, 406], "10": [460, 812], "11": [920, 1624], "12": [1840, 3248], "13": [3680, 6496], "14": [7360, 12992], "15": [14720, 25984], "16": [29440, 51968]}, "level_mpp_mapping": {"0": 15237.12, "1": 7618.56, "2": 3809.28, "3": 1904.64, "4": 952.32, "5": 476.16, "6": 238.08, "7": 119.04, "8": 59.52, "9": 29.76, "10": 14.88, "11": 7.44, "12": 3.72, "13": 1.86, "14": 0.93, "15": 0.465, "16": 0.2325}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "36a1120f2fd21642c1e26c473eac5b25cd786a21030db40e7dc77c574814bd33"} \ No newline at end of file diff --git a/features/TCGA-C4-A0F7-01Z-00-DX1.606C3AFA-F93D-4226-AA49-41B5916F9018.svs/features.npy b/features/TCGA-C4-A0F7-01Z-00-DX1.606C3AFA-F93D-4226-AA49-41B5916F9018.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..19eb6ff7cff4feefe5017f6d2f1368c9e91d440d --- /dev/null +++ b/features/TCGA-C4-A0F7-01Z-00-DX1.606C3AFA-F93D-4226-AA49-41B5916F9018.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:efdbf05e1917f1a03b1c4be1c5b87f92c9531cd60bea631cc592e98ad1a16846 +size 22503700 diff --git a/features/TCGA-C4-A0F7-01Z-00-DX1.606C3AFA-F93D-4226-AA49-41B5916F9018.svs/mask.npy b/features/TCGA-C4-A0F7-01Z-00-DX1.606C3AFA-F93D-4226-AA49-41B5916F9018.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c72bffa7cc4e7e44b96f95ae85a22bda7de22b0f --- /dev/null +++ b/features/TCGA-C4-A0F7-01Z-00-DX1.606C3AFA-F93D-4226-AA49-41B5916F9018.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c71360601fd7df4b572f3411e7fd5481669b7a0e0da77e1dee4a5ad750ab1aeb +size 28953728 diff --git a/features/TCGA-C4-A0F7-01Z-00-DX1.606C3AFA-F93D-4226-AA49-41B5916F9018.svs/metadata.json b/features/TCGA-C4-A0F7-01Z-00-DX1.606C3AFA-F93D-4226-AA49-41B5916F9018.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8feafd3bbf6b11d344504b539b19db45d932426a --- /dev/null +++ b/features/TCGA-C4-A0F7-01Z-00-DX1.606C3AFA-F93D-4226-AA49-41B5916F9018.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 2743, "total_number_of_tiles": 2743, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [37120, 49920], "tile_mpp": 0.465, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 4], "3": [5, 7], "4": [10, 13], "5": [19, 25], "6": [37, 49], "7": [73, 98], "8": [145, 195], "9": [290, 390], "10": [580, 780], "11": [1160, 1560], "12": [2320, 3120], "13": [4640, 6240], "14": [9280, 12480], "15": [18560, 24960], "16": [37120, 49920]}, "level_mpp_mapping": {"0": 15237.12, "1": 7618.56, "2": 3809.28, "3": 1904.64, "4": 952.32, "5": 476.16, "6": 238.08, "7": 119.04, "8": 59.52, "9": 29.76, "10": 14.88, "11": 7.44, "12": 3.72, "13": 1.86, "14": 0.93, "15": 0.465, "16": 0.2325}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "cd6bb0891d7f952c43d4a744aa1112c56817c42fce4db63b99341c538b386193"} \ No newline at end of file diff --git a/features/TCGA-CF-A1HR-01Z-00-DX1.C56E4296-EB85-4DBA-B0A0-9D6FA097A74F.svs/features.npy b/features/TCGA-CF-A1HR-01Z-00-DX1.C56E4296-EB85-4DBA-B0A0-9D6FA097A74F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5786d7cdb58dc5f6a44eb47d81b4fd1f47bdf11e --- /dev/null +++ b/features/TCGA-CF-A1HR-01Z-00-DX1.C56E4296-EB85-4DBA-B0A0-9D6FA097A74F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8304dd562e6fa45a23cdc312bb08a7b19eecbef34bd2c5549c94d52988f750a2 +size 101746136 diff --git a/features/TCGA-CF-A1HR-01Z-00-DX1.C56E4296-EB85-4DBA-B0A0-9D6FA097A74F.svs/mask.npy b/features/TCGA-CF-A1HR-01Z-00-DX1.C56E4296-EB85-4DBA-B0A0-9D6FA097A74F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3b6eaec65171267294a53efa5b6dccfd756888bf --- /dev/null +++ b/features/TCGA-CF-A1HR-01Z-00-DX1.C56E4296-EB85-4DBA-B0A0-9D6FA097A74F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ff7a89b568da75bd318de3eaa666562b93baf5c6fed1ced00bad193333fe0341 +size 67828224 diff --git a/features/TCGA-CF-A1HR-01Z-00-DX1.C56E4296-EB85-4DBA-B0A0-9D6FA097A74F.svs/metadata.json b/features/TCGA-CF-A1HR-01Z-00-DX1.C56E4296-EB85-4DBA-B0A0-9D6FA097A74F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..508c6173f3cb8d7a30dd6d3f2ca46347e942cf04 --- /dev/null +++ b/features/TCGA-CF-A1HR-01Z-00-DX1.C56E4296-EB85-4DBA-B0A0-9D6FA097A74F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12402, "total_number_of_tiles": 12402, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [60928, 71234], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [1, 2], "2": [2, 3], "3": [4, 5], "4": [8, 9], "5": [15, 18], "6": [30, 35], "7": [60, 70], "8": [119, 140], "9": [238, 279], "10": [476, 557], "11": [952, 1114], "12": [1904, 2227], "13": [3808, 4453], "14": [7616, 8905], "15": [15232, 17809], "16": [30464, 35617], "17": [60928, 71234]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "745dac93cd0c57ce0dd8c7562c6fffedff64b2ffff89bc329919a2e7054373d4"} \ No newline at end of file diff --git a/features/TCGA-CF-A1HS-01Z-00-DX1.CA67D874-12C9-49AB-ACA1-92C202E27083.svs/features.npy b/features/TCGA-CF-A1HS-01Z-00-DX1.CA67D874-12C9-49AB-ACA1-92C202E27083.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ed3688e09f39dc7198de8c4aea94ea5f64c61305 --- /dev/null +++ b/features/TCGA-CF-A1HS-01Z-00-DX1.CA67D874-12C9-49AB-ACA1-92C202E27083.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b9d6665c8103f6111a65466b836830028799566d0e282b6ac19622c25b5c56df +size 101040592 diff --git a/features/TCGA-CF-A1HS-01Z-00-DX1.CA67D874-12C9-49AB-ACA1-92C202E27083.svs/mask.npy b/features/TCGA-CF-A1HS-01Z-00-DX1.CA67D874-12C9-49AB-ACA1-92C202E27083.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ef18362619683a1d7eb182357d023a4cda16b160 --- /dev/null +++ b/features/TCGA-CF-A1HS-01Z-00-DX1.CA67D874-12C9-49AB-ACA1-92C202E27083.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:854841ea321ba399cef4079c1b622bb9c4b5c6c4e0f5cc1388d963a623535606 +size 63388220 diff --git a/features/TCGA-CF-A1HS-01Z-00-DX1.CA67D874-12C9-49AB-ACA1-92C202E27083.svs/metadata.json b/features/TCGA-CF-A1HS-01Z-00-DX1.CA67D874-12C9-49AB-ACA1-92C202E27083.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6aae575984618db226e5fd55f0b90f9f51ccbc46 --- /dev/null +++ b/features/TCGA-CF-A1HS-01Z-00-DX1.CA67D874-12C9-49AB-ACA1-92C202E27083.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12316, "total_number_of_tiles": 12316, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [59976, 67617], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [1, 2], "2": [2, 3], "3": [4, 5], "4": [8, 9], "5": [15, 17], "6": [30, 34], "7": [59, 67], "8": [118, 133], "9": [235, 265], "10": [469, 529], "11": [938, 1057], "12": [1875, 2114], "13": [3749, 4227], "14": [7497, 8453], "15": [14994, 16905], "16": [29988, 33809], "17": [59976, 67617]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b83712a9c309247f80518d8aca4400100ee5396f7d28b2ec19287a547e3c5ee5"} \ No newline at end of file diff --git a/features/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.svs/features.npy b/features/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..15be60eb3801e42fd4e6b1a767694df9ead5e5cd --- /dev/null +++ b/features/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a39efb58de8a37d143ea151346a8c9143cc233fd2f5d91c8abeaf3c77ab5b83c +size 75624600 diff --git a/features/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.svs/mask.npy b/features/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8d1fffec2b3d0e90270487d1b50083b1660162dc --- /dev/null +++ b/features/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7e2d3130ea001aba4ba1d794e4343827670b55c3716e2ed4d827c05245d68572 +size 57925996 diff --git a/features/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.svs/metadata.json b/features/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c7fee0d17b18b155683ac66a6b2b8775f6093dfe --- /dev/null +++ b/features/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 9218, "total_number_of_tiles": 9218, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [70448, 52609], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [9, 7], "5": [18, 13], "6": [35, 26], "7": [69, 52], "8": [138, 103], "9": [276, 206], "10": [551, 412], "11": [1101, 823], "12": [2202, 1645], "13": [4403, 3289], "14": [8806, 6577], "15": [17612, 13153], "16": [35224, 26305], "17": [70448, 52609]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "825ac1bbc9ff7b456d7cd5badfd93f70b795462e4c7db2838e5be8b735e59c2f"} \ No newline at end of file diff --git a/features/TCGA-CF-A3MF-01Z-00-DX1.91768C26-5BB1-4DE6-9737-AA26BD687A75.svs/features.npy b/features/TCGA-CF-A3MF-01Z-00-DX1.91768C26-5BB1-4DE6-9737-AA26BD687A75.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..eac8cb7b575f009297b2e5c5b6ce6e20a8b489ef --- /dev/null +++ b/features/TCGA-CF-A3MF-01Z-00-DX1.91768C26-5BB1-4DE6-9737-AA26BD687A75.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb083e9e51cbc8a09f671cbb3243a49e7953152c2874e35ce4c35b7a4c10789f +size 203959772 diff --git a/features/TCGA-CF-A3MF-01Z-00-DX1.91768C26-5BB1-4DE6-9737-AA26BD687A75.svs/mask.npy b/features/TCGA-CF-A3MF-01Z-00-DX1.91768C26-5BB1-4DE6-9737-AA26BD687A75.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..49f2c03c54bb93264cd86c07538c652d84c01a2c --- /dev/null +++ b/features/TCGA-CF-A3MF-01Z-00-DX1.91768C26-5BB1-4DE6-9737-AA26BD687A75.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e1217f639d539a7b57d926ef67c95b7507328b1138b445dc8840883c4d0b7ac5 +size 131510104 diff --git a/features/TCGA-CF-A3MF-01Z-00-DX1.91768C26-5BB1-4DE6-9737-AA26BD687A75.svs/metadata.json b/features/TCGA-CF-A3MF-01Z-00-DX1.91768C26-5BB1-4DE6-9737-AA26BD687A75.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0b42be3493decdbee23386a585b5145d57252684 --- /dev/null +++ b/features/TCGA-CF-A3MF-01Z-00-DX1.91768C26-5BB1-4DE6-9737-AA26BD687A75.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24861, "total_number_of_tiles": 24861, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [88536, 95047], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 12], "5": [22, 24], "6": [44, 47], "7": [87, 93], "8": [173, 186], "9": [346, 372], "10": [692, 743], "11": [1384, 1486], "12": [2767, 2971], "13": [5534, 5941], "14": [11067, 11881], "15": [22134, 23762], "16": [44268, 47524], "17": [88536, 95047]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "63aea5a7f9a88a84225d37499130b237"} \ No newline at end of file diff --git a/features/TCGA-CF-A3MG-01Z-00-DX1.49D55C73-735B-496E-82DA-1F6BFE88D607.svs/features.npy b/features/TCGA-CF-A3MG-01Z-00-DX1.49D55C73-735B-496E-82DA-1F6BFE88D607.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..59d248a295c5b57e23c838fd9c72e67ea4424a5f --- /dev/null +++ b/features/TCGA-CF-A3MG-01Z-00-DX1.49D55C73-735B-496E-82DA-1F6BFE88D607.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4098e587ac151f3dafe636af854c2c5fc01658cbff39fa6eb1a078c862aa037 +size 54860276 diff --git a/features/TCGA-CF-A3MG-01Z-00-DX1.49D55C73-735B-496E-82DA-1F6BFE88D607.svs/mask.npy b/features/TCGA-CF-A3MG-01Z-00-DX1.49D55C73-735B-496E-82DA-1F6BFE88D607.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ad8046d22aac1e889e15ab7f81636c8e6e9012f1 --- /dev/null +++ b/features/TCGA-CF-A3MG-01Z-00-DX1.49D55C73-735B-496E-82DA-1F6BFE88D607.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:51686aad97d10cab674a651f291eb2f1a2c7865c71553a71638f64bfc3f45181 +size 67249408 diff --git a/features/TCGA-CF-A3MG-01Z-00-DX1.49D55C73-735B-496E-82DA-1F6BFE88D607.svs/metadata.json b/features/TCGA-CF-A3MG-01Z-00-DX1.49D55C73-735B-496E-82DA-1F6BFE88D607.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c07bac510aa720ce0b2000cc7dc00857892e213f --- /dev/null +++ b/features/TCGA-CF-A3MG-01Z-00-DX1.49D55C73-735B-496E-82DA-1F6BFE88D607.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 6687, "total_number_of_tiles": 6687, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [76160, 56510], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [10, 7], "5": [19, 14], "6": [38, 28], "7": [75, 56], "8": [149, 111], "9": [298, 221], "10": [595, 442], "11": [1190, 883], "12": [2380, 1766], "13": [4760, 3532], "14": [9520, 7064], "15": [19040, 14128], "16": [38080, 28255], "17": [76160, 56510]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "50ae56e08667848843866e1cdf45e85de930490151f2652446933d0f816ff9b5"} \ No newline at end of file diff --git a/features/TCGA-CF-A3MH-01Z-00-DX1.4A6F7BDC-B7D2-4203-AA8E-7BA5DB8BF3AC.svs/features.npy b/features/TCGA-CF-A3MH-01Z-00-DX1.4A6F7BDC-B7D2-4203-AA8E-7BA5DB8BF3AC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3856ae77d0842129a9ab5dd4a651961f70680c92 --- /dev/null +++ b/features/TCGA-CF-A3MH-01Z-00-DX1.4A6F7BDC-B7D2-4203-AA8E-7BA5DB8BF3AC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:66c2751bd47bfb27521d9f6f64e2881fb56d2da66b9b960e847a2c99686af163 +size 111902688 diff --git a/features/TCGA-CF-A3MH-01Z-00-DX1.4A6F7BDC-B7D2-4203-AA8E-7BA5DB8BF3AC.svs/mask.npy b/features/TCGA-CF-A3MH-01Z-00-DX1.4A6F7BDC-B7D2-4203-AA8E-7BA5DB8BF3AC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..683e65c0c6103502c27c9766a8492451e5aa4b10 --- /dev/null +++ b/features/TCGA-CF-A3MH-01Z-00-DX1.4A6F7BDC-B7D2-4203-AA8E-7BA5DB8BF3AC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c1e227626ea220c5094df3e18e1b9455693c355835792dd0a0e5fcfe210bc023 +size 79370272 diff --git a/features/TCGA-CF-A3MH-01Z-00-DX1.4A6F7BDC-B7D2-4203-AA8E-7BA5DB8BF3AC.svs/metadata.json b/features/TCGA-CF-A3MH-01Z-00-DX1.4A6F7BDC-B7D2-4203-AA8E-7BA5DB8BF3AC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a98398b37eaf54ef3c7ba70cbf94873a30b4dcc8 --- /dev/null +++ b/features/TCGA-CF-A3MH-01Z-00-DX1.4A6F7BDC-B7D2-4203-AA8E-7BA5DB8BF3AC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13640, "total_number_of_tiles": 13640, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [72352, 70208], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [9, 9], "5": [18, 18], "6": [36, 35], "7": [71, 69], "8": [142, 138], "9": [283, 275], "10": [566, 549], "11": [1131, 1097], "12": [2261, 2194], "13": [4522, 4388], "14": [9044, 8776], "15": [18088, 17552], "16": [36176, 35104], "17": [72352, 70208]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "25d07d5a79ed13c5f28569ef5443ec32e6a7c2b6f7bf5d103ef80ce7633b9782"} \ No newline at end of file diff --git a/features/TCGA-CF-A3MI-01Z-00-DX1.5619CA1A-F772-44CC-BBE2-F2C365E2699D.svs/features.npy b/features/TCGA-CF-A3MI-01Z-00-DX1.5619CA1A-F772-44CC-BBE2-F2C365E2699D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6f46026c6c6bd047b8ac284e906919fef17fc920 --- /dev/null +++ b/features/TCGA-CF-A3MI-01Z-00-DX1.5619CA1A-F772-44CC-BBE2-F2C365E2699D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b589c2c8899a9ef12265bbc84a30e034039099be4707d7d80615edf957c7a80 +size 162660836 diff --git a/features/TCGA-CF-A3MI-01Z-00-DX1.5619CA1A-F772-44CC-BBE2-F2C365E2699D.svs/mask.npy b/features/TCGA-CF-A3MI-01Z-00-DX1.5619CA1A-F772-44CC-BBE2-F2C365E2699D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0ca81f0f9e47480b13063fc7f9f561e618e3fd92 --- /dev/null +++ b/features/TCGA-CF-A3MI-01Z-00-DX1.5619CA1A-F772-44CC-BBE2-F2C365E2699D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ea9713c18f8da28d4012d1f859bad874e7e1042ec9322c35f510e624584a83ca +size 157691376 diff --git a/features/TCGA-CF-A3MI-01Z-00-DX1.5619CA1A-F772-44CC-BBE2-F2C365E2699D.svs/metadata.json b/features/TCGA-CF-A3MI-01Z-00-DX1.5619CA1A-F772-44CC-BBE2-F2C365E2699D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..19cc704fb6834e8d6fd74dc53d152ce7ff8c791a --- /dev/null +++ b/features/TCGA-CF-A3MI-01Z-00-DX1.5619CA1A-F772-44CC-BBE2-F2C365E2699D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19827, "total_number_of_tiles": 19827, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107576, 93795], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [53, 46], "7": [106, 92], "8": [211, 184], "9": [421, 367], "10": [841, 733], "11": [1681, 1466], "12": [3362, 2932], "13": [6724, 5863], "14": [13447, 11725], "15": [26894, 23449], "16": [53788, 46898], "17": [107576, 93795]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2f3c9ff7cf264583bfb64eda22accfe4"} \ No newline at end of file diff --git a/features/TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs/features.npy b/features/TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c970ecd4dad84a9a095f01928815c365b3da944d --- /dev/null +++ b/features/TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fd878ba9111572b7232f55a56c6d029f7f7ea4d48d40ed6e2d9d931549e94573 +size 141297620 diff --git a/features/TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs/mask.npy b/features/TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5769fa96d03b5fc2a4de3519d37cf5f947431905 --- /dev/null +++ b/features/TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c37118ccbf190f366ac0d0b2490a246fbad7cedc430941043d8165bda7762c2e +size 119558952 diff --git a/features/TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs/metadata.json b/features/TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9eb44d5102dfeb04e8a8961cf82a92476bd375cc --- /dev/null +++ b/features/TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17223, "total_number_of_tiles": 17223, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93296, 82012], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [23, 21], "6": [46, 41], "7": [92, 81], "8": [183, 161], "9": [365, 321], "10": [729, 641], "11": [1458, 1282], "12": [2916, 2563], "13": [5831, 5126], "14": [11662, 10252], "15": [23324, 20503], "16": [46648, 41006], "17": [93296, 82012]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "80532a9e9fb95ff9f76c786e6e1e14e9"} \ No newline at end of file diff --git a/features/TCGA-CF-A47T-01Z-00-DX1.2AFA4BB3-B97C-4C0D-86F4-53A5F3317129.svs/features.npy b/features/TCGA-CF-A47T-01Z-00-DX1.2AFA4BB3-B97C-4C0D-86F4-53A5F3317129.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..86b092e9b368da7005b18dd83c7959510068f261 --- /dev/null +++ b/features/TCGA-CF-A47T-01Z-00-DX1.2AFA4BB3-B97C-4C0D-86F4-53A5F3317129.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c2a6a85d8f92b29b9e4b64284546da1327ea3fcf31ca83f191b96e7b617280b7 +size 135062580 diff --git a/features/TCGA-CF-A47T-01Z-00-DX1.2AFA4BB3-B97C-4C0D-86F4-53A5F3317129.svs/mask.npy b/features/TCGA-CF-A47T-01Z-00-DX1.2AFA4BB3-B97C-4C0D-86F4-53A5F3317129.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..21a5f509e4cf28d49c76c304d79e21c81e043c84 --- /dev/null +++ b/features/TCGA-CF-A47T-01Z-00-DX1.2AFA4BB3-B97C-4C0D-86F4-53A5F3317129.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:93b925d849e69b2291d176784bfb274c8023da0fe7d6726465b0364a3762f47d +size 117654476 diff --git a/features/TCGA-CF-A47T-01Z-00-DX1.2AFA4BB3-B97C-4C0D-86F4-53A5F3317129.svs/metadata.json b/features/TCGA-CF-A47T-01Z-00-DX1.2AFA4BB3-B97C-4C0D-86F4-53A5F3317129.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..99b18d1d37c1f265991f2dcc80105f6d391912b4 --- /dev/null +++ b/features/TCGA-CF-A47T-01Z-00-DX1.2AFA4BB3-B97C-4C0D-86F4-53A5F3317129.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16463, "total_number_of_tiles": 16463, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [89487, 84141], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 11], "5": [22, 21], "6": [44, 42], "7": [88, 83], "8": [175, 165], "9": [350, 329], "10": [700, 658], "11": [1399, 1315], "12": [2797, 2630], "13": [5593, 5259], "14": [11186, 10518], "15": [22372, 21036], "16": [44744, 42071], "17": [89487, 84141]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "62c928c26d9d7168d5d4250ab42b5a88"} \ No newline at end of file diff --git a/features/TCGA-CF-A47V-01Z-00-DX1.DCDFBB74-48BC-434A-ABD3-55367C56F2FD.svs/features.npy b/features/TCGA-CF-A47V-01Z-00-DX1.DCDFBB74-48BC-434A-ABD3-55367C56F2FD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a653937a3a7fb5c7fa1ce71dbc92a0e70cc461cb --- /dev/null +++ b/features/TCGA-CF-A47V-01Z-00-DX1.DCDFBB74-48BC-434A-ABD3-55367C56F2FD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:340cc94af874e5b89b7d794aff7bb31307089132bc713559e3d84a3ad8c734b6 +size 113543488 diff --git a/features/TCGA-CF-A47V-01Z-00-DX1.DCDFBB74-48BC-434A-ABD3-55367C56F2FD.svs/mask.npy b/features/TCGA-CF-A47V-01Z-00-DX1.DCDFBB74-48BC-434A-ABD3-55367C56F2FD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6aa3c599fc9ce088c1ec5a9a759ccfce8840c82a --- /dev/null +++ b/features/TCGA-CF-A47V-01Z-00-DX1.DCDFBB74-48BC-434A-ABD3-55367C56F2FD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5b03dbbdd3641d8b9472bf32d06451ea6a8878784fd6eae013e858d91e78706b +size 113202248 diff --git a/features/TCGA-CF-A47V-01Z-00-DX1.DCDFBB74-48BC-434A-ABD3-55367C56F2FD.svs/metadata.json b/features/TCGA-CF-A47V-01Z-00-DX1.DCDFBB74-48BC-434A-ABD3-55367C56F2FD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7f35d268f12b3c584af828c66511aa34c333435e --- /dev/null +++ b/features/TCGA-CF-A47V-01Z-00-DX1.DCDFBB74-48BC-434A-ABD3-55367C56F2FD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13840, "total_number_of_tiles": 13840, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111383, 65025], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [7, 4], "4": [14, 8], "5": [28, 16], "6": [55, 32], "7": [109, 64], "8": [218, 128], "9": [436, 255], "10": [871, 509], "11": [1741, 1017], "12": [3481, 2033], "13": [6962, 4065], "14": [13923, 8129], "15": [27846, 16257], "16": [55692, 32513], "17": [111383, 65025]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7c5969638426e753ef773e3fb512f388fd66f8e1d68cf344b912745835a0739e"} \ No newline at end of file diff --git a/features/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.svs/features.npy b/features/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..235b7f2b2efa2ac0f3d2be61af39fd59eb8162f9 --- /dev/null +++ b/features/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b231ec2c91c6eea05a6525aec65472482fc2c23440c1f4c2a18b13016ace2520 +size 125841284 diff --git a/features/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.svs/mask.npy b/features/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..cd747cdacab0faf2d4c72aff14a86397d5511d4f --- /dev/null +++ b/features/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f9ab9d86d4a196c8adc1b5b142020318f7b60357e9ddee7e7b64f45b22a4ae7b +size 100168760 diff --git a/features/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.svs/metadata.json b/features/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..74e4eaeec484767dbfa6215cd71738b79203d478 --- /dev/null +++ b/features/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15339, "total_number_of_tiles": 15339, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [80919, 79208], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [10, 10], "5": [20, 20], "6": [40, 39], "7": [80, 78], "8": [159, 155], "9": [317, 310], "10": [633, 619], "11": [1265, 1238], "12": [2529, 2476], "13": [5058, 4951], "14": [10115, 9901], "15": [20230, 19802], "16": [40460, 39604], "17": [80919, 79208]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "02edda831ff2350fd680c8d13bfd0c79a6385280584a6b6b4c1d66d1d663fac9"} \ No newline at end of file diff --git a/features/TCGA-CF-A47X-01Z-00-DX1.1FA2C95C-CFB9-47AA-9BA8-2C2D391BA5D7.svs/features.npy b/features/TCGA-CF-A47X-01Z-00-DX1.1FA2C95C-CFB9-47AA-9BA8-2C2D391BA5D7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..14cdb6f68e14ec3f5c7f759798c393cc18730f13 --- /dev/null +++ b/features/TCGA-CF-A47X-01Z-00-DX1.1FA2C95C-CFB9-47AA-9BA8-2C2D391BA5D7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c195389d5a1259424cff0ed05e7fe5bd2870832cbc939811afc29bd22b346f34 +size 162734672 diff --git a/features/TCGA-CF-A47X-01Z-00-DX1.1FA2C95C-CFB9-47AA-9BA8-2C2D391BA5D7.svs/mask.npy b/features/TCGA-CF-A47X-01Z-00-DX1.1FA2C95C-CFB9-47AA-9BA8-2C2D391BA5D7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..89b54a28ad7f29ab9c5485ae667c6c8bbc8205e6 --- /dev/null +++ b/features/TCGA-CF-A47X-01Z-00-DX1.1FA2C95C-CFB9-47AA-9BA8-2C2D391BA5D7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:576b7892f5e405e132bddd55cd2f40aca9c02049e445063072988b7c084ffad5 +size 118026128 diff --git a/features/TCGA-CF-A47X-01Z-00-DX1.1FA2C95C-CFB9-47AA-9BA8-2C2D391BA5D7.svs/metadata.json b/features/TCGA-CF-A47X-01Z-00-DX1.1FA2C95C-CFB9-47AA-9BA8-2C2D391BA5D7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3c3dfb94f21fc3b7f6c6898014f9d1aa46263d7c --- /dev/null +++ b/features/TCGA-CF-A47X-01Z-00-DX1.1FA2C95C-CFB9-47AA-9BA8-2C2D391BA5D7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19836, "total_number_of_tiles": 19836, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99589, 75830], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [25, 19], "6": [49, 38], "7": [98, 75], "8": [195, 149], "9": [390, 297], "10": [779, 593], "11": [1557, 1185], "12": [3113, 2370], "13": [6225, 4740], "14": [12449, 9479], "15": [24898, 18958], "16": [49795, 37915], "17": [99589, 75830]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e0c8c361b1794a13b2ed46026a89f290"} \ No newline at end of file diff --git a/features/TCGA-CF-A47Y-01Z-00-DX1.1D4B8964-E7AB-4C6F-80AC-AF84B80B80C2.svs/features.npy b/features/TCGA-CF-A47Y-01Z-00-DX1.1D4B8964-E7AB-4C6F-80AC-AF84B80B80C2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2b5c1a9496aaddf49630776e044925208816b4b0 --- /dev/null +++ b/features/TCGA-CF-A47Y-01Z-00-DX1.1D4B8964-E7AB-4C6F-80AC-AF84B80B80C2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5608284340dd3a26ee5cd98446420a3de25690d75767ec2c5241067ce9451fa2 +size 149920024 diff --git a/features/TCGA-CF-A47Y-01Z-00-DX1.1D4B8964-E7AB-4C6F-80AC-AF84B80B80C2.svs/mask.npy b/features/TCGA-CF-A47Y-01Z-00-DX1.1D4B8964-E7AB-4C6F-80AC-AF84B80B80C2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..608f79f717c39a567c38c4f12d5177acc946607f --- /dev/null +++ b/features/TCGA-CF-A47Y-01Z-00-DX1.1D4B8964-E7AB-4C6F-80AC-AF84B80B80C2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6896ff22a8ac5040441cc19424ca1260acbd6002908958ac655289470ef637b7 +size 111350016 diff --git a/features/TCGA-CF-A47Y-01Z-00-DX1.1D4B8964-E7AB-4C6F-80AC-AF84B80B80C2.svs/metadata.json b/features/TCGA-CF-A47Y-01Z-00-DX1.1D4B8964-E7AB-4C6F-80AC-AF84B80B80C2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..712bb58d1f7a27551ea24c763467dca95bd3e864 --- /dev/null +++ b/features/TCGA-CF-A47Y-01Z-00-DX1.1D4B8964-E7AB-4C6F-80AC-AF84B80B80C2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18274, "total_number_of_tiles": 18274, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101504, 70205], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 9], "5": [25, 18], "6": [50, 35], "7": [100, 69], "8": [199, 138], "9": [397, 275], "10": [793, 549], "11": [1586, 1097], "12": [3172, 2194], "13": [6344, 4388], "14": [12688, 8776], "15": [25376, 17552], "16": [50752, 35103], "17": [101504, 70205]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "aa88308be0959d95d2cd99225acf44341197981a22bedb81e372420b2a9bc4f3"} \ No newline at end of file diff --git a/features/TCGA-CF-A5U8-01Z-00-DX1.D0385BD3-3128-41C6-889D-4EC916B2B228.svs/features.npy b/features/TCGA-CF-A5U8-01Z-00-DX1.D0385BD3-3128-41C6-889D-4EC916B2B228.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1f9f0db6848b3ef8dbe329202271836aee50ddcb --- /dev/null +++ b/features/TCGA-CF-A5U8-01Z-00-DX1.D0385BD3-3128-41C6-889D-4EC916B2B228.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cfd7623cce532d3c099678b214e566e09d81cfe4c8f334f85b948a081c495291 +size 104264764 diff --git a/features/TCGA-CF-A5U8-01Z-00-DX1.D0385BD3-3128-41C6-889D-4EC916B2B228.svs/mask.npy b/features/TCGA-CF-A5U8-01Z-00-DX1.D0385BD3-3128-41C6-889D-4EC916B2B228.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0e75e4b832f1003ab2ac4b7231e268bc7869bfca --- /dev/null +++ b/features/TCGA-CF-A5U8-01Z-00-DX1.D0385BD3-3128-41C6-889D-4EC916B2B228.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:768a5d8fb4b1f5372f6fc931368ce61a8489b40db6534c575fb5c5ee5ba27f14 +size 107049824 diff --git a/features/TCGA-CF-A5U8-01Z-00-DX1.D0385BD3-3128-41C6-889D-4EC916B2B228.svs/metadata.json b/features/TCGA-CF-A5U8-01Z-00-DX1.D0385BD3-3128-41C6-889D-4EC916B2B228.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..82d155fb9c08242b31ecaea1817837c7c2fbee6f --- /dev/null +++ b/features/TCGA-CF-A5U8-01Z-00-DX1.D0385BD3-3128-41C6-889D-4EC916B2B228.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12709, "total_number_of_tiles": 12709, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [88536, 77369], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 10], "5": [22, 19], "6": [44, 38], "7": [87, 76], "8": [173, 152], "9": [346, 303], "10": [692, 605], "11": [1384, 1209], "12": [2767, 2418], "13": [5534, 4836], "14": [11067, 9672], "15": [22134, 19343], "16": [44268, 38685], "17": [88536, 77369]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5c8dad94e5727701da3d421ab663187d"} \ No newline at end of file diff --git a/features/TCGA-CF-A5UA-01Z-00-DX1.7352D4EB-46F5-4EAA-95B9-1D869E8291C3.svs/features.npy b/features/TCGA-CF-A5UA-01Z-00-DX1.7352D4EB-46F5-4EAA-95B9-1D869E8291C3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0d12b9c44340efa7bcc1227f6b0854f08dddd2da --- /dev/null +++ b/features/TCGA-CF-A5UA-01Z-00-DX1.7352D4EB-46F5-4EAA-95B9-1D869E8291C3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6a3da506f2c1251ab6f70aaa9d4191111b52779dbbb2a0c46d2b631e3c5e67f8 +size 99038816 diff --git a/features/TCGA-CF-A5UA-01Z-00-DX1.7352D4EB-46F5-4EAA-95B9-1D869E8291C3.svs/mask.npy b/features/TCGA-CF-A5UA-01Z-00-DX1.7352D4EB-46F5-4EAA-95B9-1D869E8291C3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b3f57c555e0f7eba64f2de54dc85dcee722a37c6 --- /dev/null +++ b/features/TCGA-CF-A5UA-01Z-00-DX1.7352D4EB-46F5-4EAA-95B9-1D869E8291C3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:518d507be272e01389b29341863cea07b9ff776553106dbacafeeb24bf6f54df +size 76271808 diff --git a/features/TCGA-CF-A5UA-01Z-00-DX1.7352D4EB-46F5-4EAA-95B9-1D869E8291C3.svs/metadata.json b/features/TCGA-CF-A5UA-01Z-00-DX1.7352D4EB-46F5-4EAA-95B9-1D869E8291C3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6624fc68cdb2f79d7bbce9ceddd051c8ba802338 --- /dev/null +++ b/features/TCGA-CF-A5UA-01Z-00-DX1.7352D4EB-46F5-4EAA-95B9-1D869E8291C3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12072, "total_number_of_tiles": 12072, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [77112, 63288], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [10, 8], "5": [19, 16], "6": [38, 31], "7": [76, 62], "8": [151, 124], "9": [302, 248], "10": [603, 495], "11": [1205, 989], "12": [2410, 1978], "13": [4820, 3956], "14": [9639, 7911], "15": [19278, 15822], "16": [38556, 31644], "17": [77112, 63288]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ce089256a9a35737da21300e58ea2df2ece78942fad0650cbe40a69bd5c42bda"} \ No newline at end of file diff --git a/features/TCGA-CF-A7I0-01Z-00-DX1.9920A024-B523-4CB6-992F-0BD80D9E11C9.svs/features.npy b/features/TCGA-CF-A7I0-01Z-00-DX1.9920A024-B523-4CB6-992F-0BD80D9E11C9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..67578f3da3f4d4dc211cfcbb4ccaf4eb8630897e --- /dev/null +++ b/features/TCGA-CF-A7I0-01Z-00-DX1.9920A024-B523-4CB6-992F-0BD80D9E11C9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4ea3c5409f4d2c9c358308ca9a68cdd52916d54d28fe42a56dcc7f8261a7bf38 +size 87676276 diff --git a/features/TCGA-CF-A7I0-01Z-00-DX1.9920A024-B523-4CB6-992F-0BD80D9E11C9.svs/mask.npy b/features/TCGA-CF-A7I0-01Z-00-DX1.9920A024-B523-4CB6-992F-0BD80D9E11C9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..2732e598c92c3bc6a804f1a230e8ba20de3cf04a --- /dev/null +++ b/features/TCGA-CF-A7I0-01Z-00-DX1.9920A024-B523-4CB6-992F-0BD80D9E11C9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5e04c17036d9c82ce11dc6dfe792e22e03d006d91c5661042fb70abbeb2cfcac +size 61443908 diff --git a/features/TCGA-CF-A7I0-01Z-00-DX1.9920A024-B523-4CB6-992F-0BD80D9E11C9.svs/metadata.json b/features/TCGA-CF-A7I0-01Z-00-DX1.9920A024-B523-4CB6-992F-0BD80D9E11C9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..db3eae77ee6b9edf7939acb6104e03e62a98a48f --- /dev/null +++ b/features/TCGA-CF-A7I0-01Z-00-DX1.9920A024-B523-4CB6-992F-0BD80D9E11C9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10687, "total_number_of_tiles": 10687, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [81672, 48143], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [20, 12], "6": [40, 24], "7": [80, 48], "8": [160, 95], "9": [320, 189], "10": [639, 377], "11": [1277, 753], "12": [2553, 1505], "13": [5105, 3009], "14": [10209, 6018], "15": [20418, 12036], "16": [40836, 24072], "17": [81672, 48143]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bd4d179e33801191d28e797f277b13382a01f9ffa148284ab1a2d2f5dee9341e"} \ No newline at end of file diff --git a/features/TCGA-CF-A8HX-01Z-00-DX1.92B22756-3D98-4DE6-A077-36C9F1AF1EC2.svs/features.npy b/features/TCGA-CF-A8HX-01Z-00-DX1.92B22756-3D98-4DE6-A077-36C9F1AF1EC2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e9a174b84fd7113a83e426eb29d2f31ee1363d9b --- /dev/null +++ b/features/TCGA-CF-A8HX-01Z-00-DX1.92B22756-3D98-4DE6-A077-36C9F1AF1EC2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:963aaa01c952d611ab1cc92e8e4b7eb2852a9ac2217d95aa6477d5095b222c3b +size 59848308 diff --git a/features/TCGA-CF-A8HX-01Z-00-DX1.92B22756-3D98-4DE6-A077-36C9F1AF1EC2.svs/mask.npy b/features/TCGA-CF-A8HX-01Z-00-DX1.92B22756-3D98-4DE6-A077-36C9F1AF1EC2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7c61f06fa755da547ec4cd69e7a041a35ead4dd5 --- /dev/null +++ b/features/TCGA-CF-A8HX-01Z-00-DX1.92B22756-3D98-4DE6-A077-36C9F1AF1EC2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c7741a82579b10b4b0e0b02a63351b4a2cd45b60182406d2aad5f9e518e9c1c1 +size 72747968 diff --git a/features/TCGA-CF-A8HX-01Z-00-DX1.92B22756-3D98-4DE6-A077-36C9F1AF1EC2.svs/metadata.json b/features/TCGA-CF-A8HX-01Z-00-DX1.92B22756-3D98-4DE6-A077-36C9F1AF1EC2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cb46c8fcd160a2d9e2e3c9660a485da0cb5154f2 --- /dev/null +++ b/features/TCGA-CF-A8HX-01Z-00-DX1.92B22756-3D98-4DE6-A077-36C9F1AF1EC2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 7295, "total_number_of_tiles": 7295, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [63744, 73029], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [1, 2], "2": [2, 3], "3": [4, 5], "4": [8, 9], "5": [16, 18], "6": [32, 36], "7": [63, 72], "8": [125, 143], "9": [249, 286], "10": [498, 571], "11": [996, 1142], "12": [1992, 2283], "13": [3984, 4565], "14": [7968, 9129], "15": [15936, 18258], "16": [31872, 36515], "17": [63744, 73029]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b2d12a2ee15e943641047ef55a1add8f8e4366a3b93b64aa5f9bd36ca73aa649"} \ No newline at end of file diff --git a/features/TCGA-CF-A8HY-01Z-00-DX1.53F599FE-3A6D-4BAC-92B2-CBE3F183BB71.svs/features.npy b/features/TCGA-CF-A8HY-01Z-00-DX1.53F599FE-3A6D-4BAC-92B2-CBE3F183BB71.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..726b3b112f740b1c40568692a1647a2fc2251b29 --- /dev/null +++ b/features/TCGA-CF-A8HY-01Z-00-DX1.53F599FE-3A6D-4BAC-92B2-CBE3F183BB71.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fe8e6e7ae1d83ffd7ee83f2c51053e3033aee8fb58be26a213b755a9d76b5bbe +size 91121956 diff --git a/features/TCGA-CF-A8HY-01Z-00-DX1.53F599FE-3A6D-4BAC-92B2-CBE3F183BB71.svs/mask.npy b/features/TCGA-CF-A8HY-01Z-00-DX1.53F599FE-3A6D-4BAC-92B2-CBE3F183BB71.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e31768a0d3ff5c40af8203ef3c9aa6f8a5bf5fb7 --- /dev/null +++ b/features/TCGA-CF-A8HY-01Z-00-DX1.53F599FE-3A6D-4BAC-92B2-CBE3F183BB71.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:79ebbbfd4401944e21b6467bca7c6ae269484d6c27c01d1237e09382bda7b229 +size 70819712 diff --git a/features/TCGA-CF-A8HY-01Z-00-DX1.53F599FE-3A6D-4BAC-92B2-CBE3F183BB71.svs/metadata.json b/features/TCGA-CF-A8HY-01Z-00-DX1.53F599FE-3A6D-4BAC-92B2-CBE3F183BB71.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..479fba27c1f40e474d1f65a04b9d0f77822945a8 --- /dev/null +++ b/features/TCGA-CF-A8HY-01Z-00-DX1.53F599FE-3A6D-4BAC-92B2-CBE3F183BB71.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11107, "total_number_of_tiles": 11107, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [63744, 71097], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [1, 2], "2": [2, 3], "3": [4, 5], "4": [8, 9], "5": [16, 18], "6": [32, 35], "7": [63, 70], "8": [125, 139], "9": [249, 278], "10": [498, 556], "11": [996, 1111], "12": [1992, 2222], "13": [3984, 4444], "14": [7968, 8888], "15": [15936, 17775], "16": [31872, 35549], "17": [63744, 71097]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d3424a0e3fa4e10db7061b45817c0886e131b50cf7bb9c7506e88303e658a11c"} \ No newline at end of file diff --git a/features/TCGA-CF-A9FF-01Z-00-DX1.69267287-0015-4BC2-A965-CEE9D0CFC5AA.svs/features.npy b/features/TCGA-CF-A9FF-01Z-00-DX1.69267287-0015-4BC2-A965-CEE9D0CFC5AA.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e77069e1472703afd3a7536d9c969981139db811 --- /dev/null +++ b/features/TCGA-CF-A9FF-01Z-00-DX1.69267287-0015-4BC2-A965-CEE9D0CFC5AA.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2dfa006b03419634f552f6f4dfc7f343dbb79bd8015db47febe7be71bea10873 +size 52284220 diff --git a/features/TCGA-CF-A9FF-01Z-00-DX1.69267287-0015-4BC2-A965-CEE9D0CFC5AA.svs/mask.npy b/features/TCGA-CF-A9FF-01Z-00-DX1.69267287-0015-4BC2-A965-CEE9D0CFC5AA.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ec1e446179ec175e82e37a4e18c57c6b4ba54953 --- /dev/null +++ b/features/TCGA-CF-A9FF-01Z-00-DX1.69267287-0015-4BC2-A965-CEE9D0CFC5AA.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:40b079d3e589a40c294eaa0f7ee99f3812755962118960cd3b4ddea098a5833b +size 44875904 diff --git a/features/TCGA-CF-A9FF-01Z-00-DX1.69267287-0015-4BC2-A965-CEE9D0CFC5AA.svs/metadata.json b/features/TCGA-CF-A9FF-01Z-00-DX1.69267287-0015-4BC2-A965-CEE9D0CFC5AA.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..47c5bc7c20fe5c1ab10849f06c39cbb27a0d008a --- /dev/null +++ b/features/TCGA-CF-A9FF-01Z-00-DX1.69267287-0015-4BC2-A965-CEE9D0CFC5AA.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 6373, "total_number_of_tiles": 6373, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [63744, 45049], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 22], "6": [63, 44], "7": [125, 88], "8": [249, 176], "9": [498, 352], "10": [996, 704], "11": [1992, 1408], "12": [3984, 2816], "13": [7968, 5632], "14": [15936, 11263], "15": [31872, 22525], "16": [63744, 45049]}, "level_mpp_mapping": {"0": 16547.84, "1": 8273.92, "2": 4136.96, "3": 2068.48, "4": 1034.24, "5": 517.12, "6": 258.56, "7": 129.28, "8": 64.64, "9": 32.32, "10": 16.16, "11": 8.08, "12": 4.04, "13": 2.02, "14": 1.01, "15": 0.505, "16": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "af48dc2496319a5786c149ba66a96f3e"} \ No newline at end of file diff --git a/features/TCGA-CF-A9FH-01Z-00-DX1.26AACDC9-1C0B-4AD4-A484-E093515F42B1.svs/features.npy b/features/TCGA-CF-A9FH-01Z-00-DX1.26AACDC9-1C0B-4AD4-A484-E093515F42B1.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..88ec28a63d282e9f16cb67e73923310e6b7f0744 --- /dev/null +++ b/features/TCGA-CF-A9FH-01Z-00-DX1.26AACDC9-1C0B-4AD4-A484-E093515F42B1.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fd9d3ffff395a2d8151ae51b169240e82d2867c3a7eff7273e147953afa071b8 +size 130722664 diff --git a/features/TCGA-CF-A9FH-01Z-00-DX1.26AACDC9-1C0B-4AD4-A484-E093515F42B1.svs/mask.npy b/features/TCGA-CF-A9FH-01Z-00-DX1.26AACDC9-1C0B-4AD4-A484-E093515F42B1.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9c1032d180cbe72ae6a08683828abc8049d75daa --- /dev/null +++ b/features/TCGA-CF-A9FH-01Z-00-DX1.26AACDC9-1C0B-4AD4-A484-E093515F42B1.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:93690eab679393db3194f9a0f15c86e0f898dc91993042ec1f0f613f907971be +size 129429332 diff --git a/features/TCGA-CF-A9FH-01Z-00-DX1.26AACDC9-1C0B-4AD4-A484-E093515F42B1.svs/metadata.json b/features/TCGA-CF-A9FH-01Z-00-DX1.26AACDC9-1C0B-4AD4-A484-E093515F42B1.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4d10364cb0aaa1d18b929c8967cd0cbfe29aa9f5 --- /dev/null +++ b/features/TCGA-CF-A9FH-01Z-00-DX1.26AACDC9-1C0B-4AD4-A484-E093515F42B1.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15934, "total_number_of_tiles": 15934, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115536, 71686], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 9], "5": [29, 18], "6": [57, 36], "7": [113, 71], "8": [226, 141], "9": [452, 281], "10": [903, 561], "11": [1806, 1121], "12": [3611, 2241], "13": [7221, 4481], "14": [14442, 8961], "15": [28884, 17922], "16": [57768, 35843], "17": [115536, 71686]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "91ad228baa35dd563ba69653db0a9758"} \ No newline at end of file diff --git a/features/TCGA-CF-A9FL-01Z-00-DX1.711B523B-E033-41ED-AE06-6233C89DCC57.svs/features.npy b/features/TCGA-CF-A9FL-01Z-00-DX1.711B523B-E033-41ED-AE06-6233C89DCC57.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0d113f1c47261ec07637231fd9146c4a28797afd --- /dev/null +++ b/features/TCGA-CF-A9FL-01Z-00-DX1.711B523B-E033-41ED-AE06-6233C89DCC57.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5aefce70493e3ff71f145a3e68e9a5a1ea785c3ae58c2c73475091a0150c8f87 +size 180004092 diff --git a/features/TCGA-CF-A9FL-01Z-00-DX1.711B523B-E033-41ED-AE06-6233C89DCC57.svs/mask.npy b/features/TCGA-CF-A9FL-01Z-00-DX1.711B523B-E033-41ED-AE06-6233C89DCC57.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f42adfb43654379053acf58feadc7031eccd074e --- /dev/null +++ b/features/TCGA-CF-A9FL-01Z-00-DX1.711B523B-E033-41ED-AE06-6233C89DCC57.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b5d42a0038da1e646300e262074ed23f1dcbc6fe0263c36b07d7590d6c706eb4 +size 121695392 diff --git a/features/TCGA-CF-A9FL-01Z-00-DX1.711B523B-E033-41ED-AE06-6233C89DCC57.svs/metadata.json b/features/TCGA-CF-A9FL-01Z-00-DX1.711B523B-E033-41ED-AE06-6233C89DCC57.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4aaa0deda0543f42aeb5438d2d60d728969b3bac --- /dev/null +++ b/features/TCGA-CF-A9FL-01Z-00-DX1.711B523B-E033-41ED-AE06-6233C89DCC57.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21941, "total_number_of_tiles": 21941, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [95616, 81454], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [24, 20], "6": [47, 40], "7": [94, 80], "8": [187, 160], "9": [374, 319], "10": [747, 637], "11": [1494, 1273], "12": [2988, 2546], "13": [5976, 5091], "14": [11952, 10182], "15": [23904, 20364], "16": [47808, 40727], "17": [95616, 81454]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2d214685586864758af4c0f466d2e9b6"} \ No newline at end of file diff --git a/features/TCGA-CF-A9FM-01Z-00-DX1.F9379708-8E04-435E-BF12-8E3222AE728D.svs/features.npy b/features/TCGA-CF-A9FM-01Z-00-DX1.F9379708-8E04-435E-BF12-8E3222AE728D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..af32d814eb11e318e42b2da7d99c822bfdc572ca --- /dev/null +++ b/features/TCGA-CF-A9FM-01Z-00-DX1.F9379708-8E04-435E-BF12-8E3222AE728D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4b5a38c9a81de0cb50ca3f75dc4ea7531f4d8784867d297ea5b623f14b76bb2b +size 182120724 diff --git a/features/TCGA-CF-A9FM-01Z-00-DX1.F9379708-8E04-435E-BF12-8E3222AE728D.svs/mask.npy b/features/TCGA-CF-A9FM-01Z-00-DX1.F9379708-8E04-435E-BF12-8E3222AE728D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1aeccf0d7def9c72ab6452e987866c6ad056a1cd --- /dev/null +++ b/features/TCGA-CF-A9FM-01Z-00-DX1.F9379708-8E04-435E-BF12-8E3222AE728D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6455e12ed68787f8cacefc1b801e41f0f6089d2f75261740a0c5dfa1043ef345 +size 131610900 diff --git a/features/TCGA-CF-A9FM-01Z-00-DX1.F9379708-8E04-435E-BF12-8E3222AE728D.svs/metadata.json b/features/TCGA-CF-A9FM-01Z-00-DX1.F9379708-8E04-435E-BF12-8E3222AE728D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..36ae3c575ed2d84e7a22c5fcaf7afa2ee7ba8b07 --- /dev/null +++ b/features/TCGA-CF-A9FM-01Z-00-DX1.F9379708-8E04-435E-BF12-8E3222AE728D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22199, "total_number_of_tiles": 22199, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97608, 86281], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [24, 22], "6": [48, 43], "7": [96, 85], "8": [191, 169], "9": [382, 338], "10": [763, 675], "11": [1526, 1349], "12": [3051, 2697], "13": [6101, 5393], "14": [12201, 10786], "15": [24402, 21571], "16": [48804, 43141], "17": [97608, 86281]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e59e724abb68e15f7a163319b1008de5"} \ No newline at end of file diff --git a/features/TCGA-CU-A0YN-01Z-00-DX1.6C5EAAAF-8F14-49D3-8FFC-9BDAE56CAFD0.svs/features.npy b/features/TCGA-CU-A0YN-01Z-00-DX1.6C5EAAAF-8F14-49D3-8FFC-9BDAE56CAFD0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..45ecff6c3a5f6802279d7f5ce7538078ac340b8f --- /dev/null +++ b/features/TCGA-CU-A0YN-01Z-00-DX1.6C5EAAAF-8F14-49D3-8FFC-9BDAE56CAFD0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d5778e9bd534239453e1a41606db1edbbda0b40f5f9edd97e7bbf8fc373f75b6 +size 21896604 diff --git a/features/TCGA-CU-A0YN-01Z-00-DX1.6C5EAAAF-8F14-49D3-8FFC-9BDAE56CAFD0.svs/mask.npy b/features/TCGA-CU-A0YN-01Z-00-DX1.6C5EAAAF-8F14-49D3-8FFC-9BDAE56CAFD0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9a49a2ab703d136b29c9230720610f10752064e5 --- /dev/null +++ b/features/TCGA-CU-A0YN-01Z-00-DX1.6C5EAAAF-8F14-49D3-8FFC-9BDAE56CAFD0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f895018dfdba356e535688b6af394bf72b47a14826955e480a8dd98a00fbf1ff +size 69825644 diff --git a/features/TCGA-CU-A0YN-01Z-00-DX1.6C5EAAAF-8F14-49D3-8FFC-9BDAE56CAFD0.svs/metadata.json b/features/TCGA-CU-A0YN-01Z-00-DX1.6C5EAAAF-8F14-49D3-8FFC-9BDAE56CAFD0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a8d59573bdbcdccdccd50c3e43bc812d299f68b5 --- /dev/null +++ b/features/TCGA-CU-A0YN-01Z-00-DX1.6C5EAAAF-8F14-49D3-8FFC-9BDAE56CAFD0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 2669, "total_number_of_tiles": 2669, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [130576, 34214], "tile_mpp": 0.501, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [8, 3], "4": [16, 5], "5": [32, 9], "6": [64, 17], "7": [128, 34], "8": [256, 67], "9": [511, 134], "10": [1021, 268], "11": [2041, 535], "12": [4081, 1070], "13": [8161, 2139], "14": [16322, 4277], "15": [32644, 8554], "16": [65288, 17107], "17": [130576, 34214]}, "level_mpp_mapping": {"0": 32833.536, "1": 16416.768, "2": 8208.384, "3": 4104.192, "4": 2052.096, "5": 1026.048, "6": 513.024, "7": 256.512, "8": 128.256, "9": 64.128, "10": 32.064, "11": 16.032, "12": 8.016, "13": 4.008, "14": 2.004, "15": 1.002, "16": 0.501, "17": 0.2505}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ad602690583ffef93cd25df7053d56865c927733e70c583a5040a436c9ee477e"} \ No newline at end of file diff --git a/features/TCGA-CU-A0YO-01Z-00-DX1.847097EC-2E17-44BA-9162-6AA298B7CAFD.svs/features.npy b/features/TCGA-CU-A0YO-01Z-00-DX1.847097EC-2E17-44BA-9162-6AA298B7CAFD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..39d2279f9b3c1cd4277b4e8774ff78802176d998 --- /dev/null +++ b/features/TCGA-CU-A0YO-01Z-00-DX1.847097EC-2E17-44BA-9162-6AA298B7CAFD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9eee1fed3665191aaed191af2cc9d2576130e7ad1d3a145c8ec72f87daf18a10 +size 139599392 diff --git a/features/TCGA-CU-A0YO-01Z-00-DX1.847097EC-2E17-44BA-9162-6AA298B7CAFD.svs/mask.npy b/features/TCGA-CU-A0YO-01Z-00-DX1.847097EC-2E17-44BA-9162-6AA298B7CAFD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..eea13922f408585c8733597adee0c7a2e877ed0e --- /dev/null +++ b/features/TCGA-CU-A0YO-01Z-00-DX1.847097EC-2E17-44BA-9162-6AA298B7CAFD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e4b710458eb18c915c7df71ddb2bdc8ad4d94b14f40ef1982ba2600d276029f7 +size 162933960 diff --git a/features/TCGA-CU-A0YO-01Z-00-DX1.847097EC-2E17-44BA-9162-6AA298B7CAFD.svs/metadata.json b/features/TCGA-CU-A0YO-01Z-00-DX1.847097EC-2E17-44BA-9162-6AA298B7CAFD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cdd5b402d62f2961c9eb68f0d754b689b6e61f95 --- /dev/null +++ b/features/TCGA-CU-A0YO-01Z-00-DX1.847097EC-2E17-44BA-9162-6AA298B7CAFD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17016, "total_number_of_tiles": 17016, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [148818, 70054], "tile_mpp": 0.501, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 5], "5": [19, 9], "6": [37, 18], "7": [73, 35], "8": [146, 69], "9": [291, 137], "10": [582, 274], "11": [1163, 548], "12": [2326, 1095], "13": [4651, 2190], "14": [9302, 4379], "15": [18603, 8757], "16": [37205, 17514], "17": [74409, 35027], "18": [148818, 70054]}, "level_mpp_mapping": {"0": 65667.072, "1": 32833.536, "2": 16416.768, "3": 8208.384, "4": 4104.192, "5": 2052.096, "6": 1026.048, "7": 513.024, "8": 256.512, "9": 128.256, "10": 64.128, "11": 32.064, "12": 16.032, "13": 8.016, "14": 4.008, "15": 2.004, "16": 1.002, "17": 0.501, "18": 0.2505}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9f97ea34f1547c114e34030d88af29b813bed5be57f40aa0804ec53c3456812f"} \ No newline at end of file diff --git a/features/TCGA-CU-A0YR-01Z-00-DX1.B3690B2C-0B90-47D6-8709-D493A74E3F7B.svs/features.npy b/features/TCGA-CU-A0YR-01Z-00-DX1.B3690B2C-0B90-47D6-8709-D493A74E3F7B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..74810cdd7ed64ca4471141f25ab66fd3a9719f02 --- /dev/null +++ b/features/TCGA-CU-A0YR-01Z-00-DX1.B3690B2C-0B90-47D6-8709-D493A74E3F7B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4067677498a3b1d25b7eb6fc6c06c8b781e6b6f752773bddc60ac77e56b0adbc +size 62219264 diff --git a/features/TCGA-CU-A0YR-01Z-00-DX1.B3690B2C-0B90-47D6-8709-D493A74E3F7B.svs/mask.npy b/features/TCGA-CU-A0YR-01Z-00-DX1.B3690B2C-0B90-47D6-8709-D493A74E3F7B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ead4fbab8a398c3f8005465e73bae8ada975bb90 --- /dev/null +++ b/features/TCGA-CU-A0YR-01Z-00-DX1.B3690B2C-0B90-47D6-8709-D493A74E3F7B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f7096f5d9e12fb9f22f2bcac1dc4cb74e6931cff27c94226c461f9bdf3aba6d7 +size 83171216 diff --git a/features/TCGA-CU-A0YR-01Z-00-DX1.B3690B2C-0B90-47D6-8709-D493A74E3F7B.svs/metadata.json b/features/TCGA-CU-A0YR-01Z-00-DX1.B3690B2C-0B90-47D6-8709-D493A74E3F7B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..980da5618e19faa89f5cfec00c08bf08d8b607b8 --- /dev/null +++ b/features/TCGA-CU-A0YR-01Z-00-DX1.B3690B2C-0B90-47D6-8709-D493A74E3F7B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 7584, "total_number_of_tiles": 7584, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [120015, 44347], "tile_mpp": 0.501, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [8, 3], "4": [15, 6], "5": [30, 11], "6": [59, 22], "7": [118, 44], "8": [235, 87], "9": [469, 174], "10": [938, 347], "11": [1876, 693], "12": [3751, 1386], "13": [7501, 2772], "14": [15002, 5544], "15": [30004, 11087], "16": [60008, 22174], "17": [120015, 44347]}, "level_mpp_mapping": {"0": 32833.536, "1": 16416.768, "2": 8208.384, "3": 4104.192, "4": 2052.096, "5": 1026.048, "6": 513.024, "7": 256.512, "8": 128.256, "9": 64.128, "10": 32.064, "11": 16.032, "12": 8.016, "13": 4.008, "14": 2.004, "15": 1.002, "16": 0.501, "17": 0.2505}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c14ed5564e9a7deba300e25dbb82a64c1716d4afd5f6ed9a40f6f453a0a10977"} \ No newline at end of file diff --git a/features/TCGA-CU-A3KJ-01Z-00-DX1.5E6E8B80-4059-4625-AED8-D049F4B63FF7.svs/features.npy b/features/TCGA-CU-A3KJ-01Z-00-DX1.5E6E8B80-4059-4625-AED8-D049F4B63FF7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..aead21d9744da49e5630848788792bc6d407e6b0 --- /dev/null +++ b/features/TCGA-CU-A3KJ-01Z-00-DX1.5E6E8B80-4059-4625-AED8-D049F4B63FF7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b8639c43a955229138068ca71e7b1545ae0547a1c425c0b44b71015de5cce084 +size 92935040 diff --git a/features/TCGA-CU-A3KJ-01Z-00-DX1.5E6E8B80-4059-4625-AED8-D049F4B63FF7.svs/mask.npy b/features/TCGA-CU-A3KJ-01Z-00-DX1.5E6E8B80-4059-4625-AED8-D049F4B63FF7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0c54935d243e646318e992d16a7dcb3c9d0f3c61 --- /dev/null +++ b/features/TCGA-CU-A3KJ-01Z-00-DX1.5E6E8B80-4059-4625-AED8-D049F4B63FF7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9453a4af61e0e660c29a65d409cd227b8523e74f72300b2e19db84bcb6b523b9 +size 87822128 diff --git a/features/TCGA-CU-A3KJ-01Z-00-DX1.5E6E8B80-4059-4625-AED8-D049F4B63FF7.svs/metadata.json b/features/TCGA-CU-A3KJ-01Z-00-DX1.5E6E8B80-4059-4625-AED8-D049F4B63FF7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c6d4f71e3a65bc181468e78e3911aacd507e8b86 --- /dev/null +++ b/features/TCGA-CU-A3KJ-01Z-00-DX1.5E6E8B80-4059-4625-AED8-D049F4B63FF7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11328, "total_number_of_tiles": 11328, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [142799, 39348], "tile_mpp": 0.4944, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [9, 3], "5": [18, 5], "6": [35, 10], "7": [70, 20], "8": [140, 39], "9": [279, 77], "10": [558, 154], "11": [1116, 308], "12": [2232, 615], "13": [4463, 1230], "14": [8925, 2460], "15": [17850, 4919], "16": [35700, 9837], "17": [71400, 19674], "18": [142799, 39348]}, "level_mpp_mapping": {"0": 64801.9968, "1": 32400.9984, "2": 16200.4992, "3": 8100.2496, "4": 4050.1248, "5": 2025.0624, "6": 1012.5312, "7": 506.2656, "8": 253.1328, "9": 126.5664, "10": 63.2832, "11": 31.6416, "12": 15.8208, "13": 7.9104, "14": 3.9552, "15": 1.9776, "16": 0.9888, "17": 0.4944, "18": 0.2472}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "6cdbf48886baa7a728bc779218e33a5ef8dfd46f6cb37eed6a635345becc95f0"} \ No newline at end of file diff --git a/features/TCGA-CU-A3QU-01Z-00-DX1.661F12B3-2865-468B-828F-663B9E9B5DDE.svs/features.npy b/features/TCGA-CU-A3QU-01Z-00-DX1.661F12B3-2865-468B-828F-663B9E9B5DDE.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3545f50a5b2de8bb68e804d840789ce2185a1978 --- /dev/null +++ b/features/TCGA-CU-A3QU-01Z-00-DX1.661F12B3-2865-468B-828F-663B9E9B5DDE.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7c16ac4ade334e482b28ba64a617e0f46e36ee926e076adc085653696e1fe3e5 +size 222779748 diff --git a/features/TCGA-CU-A3QU-01Z-00-DX1.661F12B3-2865-468B-828F-663B9E9B5DDE.svs/mask.npy b/features/TCGA-CU-A3QU-01Z-00-DX1.661F12B3-2865-468B-828F-663B9E9B5DDE.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b5921b083cd9e05360ed071919adc8ad6ef353b1 --- /dev/null +++ b/features/TCGA-CU-A3QU-01Z-00-DX1.661F12B3-2865-468B-828F-663B9E9B5DDE.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:794f8979cabb7ece603b1d911a7ec4de40c9cb253835cf594dbe28a1169633d6 +size 216188112 diff --git a/features/TCGA-CU-A3QU-01Z-00-DX1.661F12B3-2865-468B-828F-663B9E9B5DDE.svs/metadata.json b/features/TCGA-CU-A3QU-01Z-00-DX1.661F12B3-2865-468B-828F-663B9E9B5DDE.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9427234c8d061e5ae6c41072ce1fe04e69f4ce04 --- /dev/null +++ b/features/TCGA-CU-A3QU-01Z-00-DX1.661F12B3-2865-468B-828F-663B9E9B5DDE.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 27155, "total_number_of_tiles": 27155, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [197063, 70199], "tile_mpp": 0.4944, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [7, 3], "4": [13, 5], "5": [25, 9], "6": [49, 18], "7": [97, 35], "8": [193, 69], "9": [385, 138], "10": [770, 275], "11": [1540, 549], "12": [3080, 1097], "13": [6159, 2194], "14": [12317, 4388], "15": [24633, 8775], "16": [49266, 17550], "17": [98532, 35100], "18": [197063, 70199]}, "level_mpp_mapping": {"0": 64801.9968, "1": 32400.9984, "2": 16200.4992, "3": 8100.2496, "4": 4050.1248, "5": 2025.0624, "6": 1012.5312, "7": 506.2656, "8": 253.1328, "9": 126.5664, "10": 63.2832, "11": 31.6416, "12": 15.8208, "13": 7.9104, "14": 3.9552, "15": 1.9776, "16": 0.9888, "17": 0.4944, "18": 0.2472}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d6b8d477d3b84b6d1bec3b7321de138275b3e9718701019636ad75409687731b"} \ No newline at end of file diff --git a/features/TCGA-CU-A3YL-01Z-00-DX1.813C9F59-869C-4B8E-B295-22F67AD83F37.svs/features.npy b/features/TCGA-CU-A3YL-01Z-00-DX1.813C9F59-869C-4B8E-B295-22F67AD83F37.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..899fab5e45fac678f5d1f174a8335607ef6b16be --- /dev/null +++ b/features/TCGA-CU-A3YL-01Z-00-DX1.813C9F59-869C-4B8E-B295-22F67AD83F37.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:985c909d6012f2d8d5d87dedf921d7ab8865b9b82c950c4cf5a61afdd289884b +size 151979228 diff --git a/features/TCGA-CU-A3YL-01Z-00-DX1.813C9F59-869C-4B8E-B295-22F67AD83F37.svs/mask.npy b/features/TCGA-CU-A3YL-01Z-00-DX1.813C9F59-869C-4B8E-B295-22F67AD83F37.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d7554a274a1b21f73cffb2166980dad534c605ee --- /dev/null +++ b/features/TCGA-CU-A3YL-01Z-00-DX1.813C9F59-869C-4B8E-B295-22F67AD83F37.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d1eba104d88bd959f28d2debb195ecf04e231cf772680ea771209e9e78d68008 +size 197278328 diff --git a/features/TCGA-CU-A3YL-01Z-00-DX1.813C9F59-869C-4B8E-B295-22F67AD83F37.svs/metadata.json b/features/TCGA-CU-A3YL-01Z-00-DX1.813C9F59-869C-4B8E-B295-22F67AD83F37.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5a0b49e5a8f9c4d6079721b7eaa3fac7886a18a4 --- /dev/null +++ b/features/TCGA-CU-A3YL-01Z-00-DX1.813C9F59-869C-4B8E-B295-22F67AD83F37.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18525, "total_number_of_tiles": 18525, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [171359, 73678], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [11, 5], "5": [21, 9], "6": [42, 18], "7": [84, 36], "8": [168, 72], "9": [335, 144], "10": [670, 288], "11": [1339, 576], "12": [2678, 1152], "13": [5355, 2303], "14": [10710, 4605], "15": [21420, 9210], "16": [42840, 18420], "17": [85680, 36839], "18": [171359, 73678]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "eac1038871ba34def188264f3564e8bc373f4e0bdf50154dc7550d0d7369a7fa"} \ No newline at end of file diff --git a/features/TCGA-CU-A5W6-01Z-00-DX1.11155086-4A71-4207-85B9-CAF7B6D3D60D.svs/features.npy b/features/TCGA-CU-A5W6-01Z-00-DX1.11155086-4A71-4207-85B9-CAF7B6D3D60D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cba6f3d629c57a4c5e9e1c7420d5367430a2bbc7 --- /dev/null +++ b/features/TCGA-CU-A5W6-01Z-00-DX1.11155086-4A71-4207-85B9-CAF7B6D3D60D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c86c205bf88b06e1ad6b1a782128905a510a8c9faefbb226726f848dd247e962 +size 82876936 diff --git a/features/TCGA-CU-A5W6-01Z-00-DX1.11155086-4A71-4207-85B9-CAF7B6D3D60D.svs/mask.npy b/features/TCGA-CU-A5W6-01Z-00-DX1.11155086-4A71-4207-85B9-CAF7B6D3D60D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..11a3801051516f7295472e13abc54445d12d4777 --- /dev/null +++ b/features/TCGA-CU-A5W6-01Z-00-DX1.11155086-4A71-4207-85B9-CAF7B6D3D60D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7baae907dfd35e10d53ebc89931756d91d3f6f6ef7fda45411ccd4d26c990f3b +size 121428864 diff --git a/features/TCGA-CU-A5W6-01Z-00-DX1.11155086-4A71-4207-85B9-CAF7B6D3D60D.svs/metadata.json b/features/TCGA-CU-A5W6-01Z-00-DX1.11155086-4A71-4207-85B9-CAF7B6D3D60D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5152f2972c3f5731534653128912451638879592 --- /dev/null +++ b/features/TCGA-CU-A5W6-01Z-00-DX1.11155086-4A71-4207-85B9-CAF7B6D3D60D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10102, "total_number_of_tiles": 10102, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [141847, 54774], "tile_mpp": 0.4944, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [9, 4], "5": [18, 7], "6": [35, 14], "7": [70, 27], "8": [139, 54], "9": [278, 107], "10": [555, 214], "11": [1109, 428], "12": [2217, 856], "13": [4433, 1712], "14": [8866, 3424], "15": [17731, 6847], "16": [35462, 13694], "17": [70924, 27387], "18": [141847, 54774]}, "level_mpp_mapping": {"0": 64801.9968, "1": 32400.9984, "2": 16200.4992, "3": 8100.2496, "4": 4050.1248, "5": 2025.0624, "6": 1012.5312, "7": 506.2656, "8": 253.1328, "9": 126.5664, "10": 63.2832, "11": 31.6416, "12": 15.8208, "13": 7.9104, "14": 3.9552, "15": 1.9776, "16": 0.9888, "17": 0.4944, "18": 0.2472}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c33abcbb884b9ac94e6d705ae4cc6eaa577faca7ff1b64976b153e4ca0452f91"} \ No newline at end of file diff --git a/features/TCGA-CU-A72E-01Z-00-DX1.11B1B313-85DB-460B-9B78-398224F63A04.svs/features.npy b/features/TCGA-CU-A72E-01Z-00-DX1.11B1B313-85DB-460B-9B78-398224F63A04.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..bc68564a88381dbb29dc87def1eb55b85e6a1c56 --- /dev/null +++ b/features/TCGA-CU-A72E-01Z-00-DX1.11B1B313-85DB-460B-9B78-398224F63A04.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dacd9f7441cd31ee764c119860de7fe359693b3280c9db442a192c10e47b8ef7 +size 166155740 diff --git a/features/TCGA-CU-A72E-01Z-00-DX1.11B1B313-85DB-460B-9B78-398224F63A04.svs/mask.npy b/features/TCGA-CU-A72E-01Z-00-DX1.11B1B313-85DB-460B-9B78-398224F63A04.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f9ca10fa90ba13dac6e823de3bf71b3a12f3726f --- /dev/null +++ b/features/TCGA-CU-A72E-01Z-00-DX1.11B1B313-85DB-460B-9B78-398224F63A04.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ea4ca2dec88cb8cdaea572d32041b8d580f633605924d01fbe83ddf279c47bd5 +size 159562944 diff --git a/features/TCGA-CU-A72E-01Z-00-DX1.11B1B313-85DB-460B-9B78-398224F63A04.svs/metadata.json b/features/TCGA-CU-A72E-01Z-00-DX1.11B1B313-85DB-460B-9B78-398224F63A04.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..91310f84e4bd151e06be1efa9b155ca216f62a3f --- /dev/null +++ b/features/TCGA-CU-A72E-01Z-00-DX1.11B1B313-85DB-460B-9B78-398224F63A04.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20253, "total_number_of_tiles": 20253, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [156127, 65395], "tile_mpp": 0.4944, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [10, 4], "5": [20, 8], "6": [39, 16], "7": [77, 32], "8": [153, 64], "9": [305, 128], "10": [610, 256], "11": [1220, 511], "12": [2440, 1022], "13": [4879, 2044], "14": [9758, 4088], "15": [19516, 8175], "16": [39032, 16349], "17": [78064, 32698], "18": [156127, 65395]}, "level_mpp_mapping": {"0": 64801.9968, "1": 32400.9984, "2": 16200.4992, "3": 8100.2496, "4": 4050.1248, "5": 2025.0624, "6": 1012.5312, "7": 506.2656, "8": 253.1328, "9": 126.5664, "10": 63.2832, "11": 31.6416, "12": 15.8208, "13": 7.9104, "14": 3.9552, "15": 1.9776, "16": 0.9888, "17": 0.4944, "18": 0.2472}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "70e8756f5cf4e7409fa8c0658aa9070bb29c895670f0d336e61414eddee3d7c3"} \ No newline at end of file diff --git a/features/TCGA-DK-A1A3-01Z-00-DX1.89FB6586-56D1-4EF7-AE4B-66EED29667CD.svs/features.npy b/features/TCGA-DK-A1A3-01Z-00-DX1.89FB6586-56D1-4EF7-AE4B-66EED29667CD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..fb3d069545ec62260db0ccad3a1526df2000c8d7 --- /dev/null +++ b/features/TCGA-DK-A1A3-01Z-00-DX1.89FB6586-56D1-4EF7-AE4B-66EED29667CD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1df8266fa543550459b7661bb5f6e81a09187ddcb3fae657a744e145ac7f8ed2 +size 137023336 diff --git a/features/TCGA-DK-A1A3-01Z-00-DX1.89FB6586-56D1-4EF7-AE4B-66EED29667CD.svs/mask.npy b/features/TCGA-DK-A1A3-01Z-00-DX1.89FB6586-56D1-4EF7-AE4B-66EED29667CD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4e3cdaed24b6de2460a06b5bea6a6678f2e50637 --- /dev/null +++ b/features/TCGA-DK-A1A3-01Z-00-DX1.89FB6586-56D1-4EF7-AE4B-66EED29667CD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0fc73ce0f4f597b4bc9ac9a64cb1df9ca27203618e149b919b9ff222eaf28c06 +size 119782076 diff --git a/features/TCGA-DK-A1A3-01Z-00-DX1.89FB6586-56D1-4EF7-AE4B-66EED29667CD.svs/metadata.json b/features/TCGA-DK-A1A3-01Z-00-DX1.89FB6586-56D1-4EF7-AE4B-66EED29667CD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e9ffe8a549ce6274f2854b4b94639dc619d72257 --- /dev/null +++ b/features/TCGA-DK-A1A3-01Z-00-DX1.89FB6586-56D1-4EF7-AE4B-66EED29667CD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16702, "total_number_of_tiles": 16702, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115535, 66351], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 9], "5": [29, 17], "6": [57, 33], "7": [113, 65], "8": [226, 130], "9": [452, 260], "10": [903, 519], "11": [1806, 1037], "12": [3611, 2074], "13": [7221, 4147], "14": [14442, 8294], "15": [28884, 16588], "16": [57768, 33176], "17": [115535, 66351]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a818bdc251645a87cfcb91c7b5da2abc"} \ No newline at end of file diff --git a/features/TCGA-DK-A1A5-01Z-00-DX1.463753DB-C4EA-4973-AF04-4BD0FF39C19D.svs/features.npy b/features/TCGA-DK-A1A5-01Z-00-DX1.463753DB-C4EA-4973-AF04-4BD0FF39C19D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f391bce660773304ce48a138b71618ea97907831 --- /dev/null +++ b/features/TCGA-DK-A1A5-01Z-00-DX1.463753DB-C4EA-4973-AF04-4BD0FF39C19D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d13f7c3bff0845787b7fddefc276161d568af2d9afad25b4f208de9207a4445e +size 158763936 diff --git a/features/TCGA-DK-A1A5-01Z-00-DX1.463753DB-C4EA-4973-AF04-4BD0FF39C19D.svs/mask.npy b/features/TCGA-DK-A1A5-01Z-00-DX1.463753DB-C4EA-4973-AF04-4BD0FF39C19D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8f42194c437b3f82f2cb52e5947295130fae5175 --- /dev/null +++ b/features/TCGA-DK-A1A5-01Z-00-DX1.463753DB-C4EA-4973-AF04-4BD0FF39C19D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a35bdc486f7e99feffbd8fcb541b47004257b65d981168c48fa745aa10ead014 +size 138790296 diff --git a/features/TCGA-DK-A1A5-01Z-00-DX1.463753DB-C4EA-4973-AF04-4BD0FF39C19D.svs/metadata.json b/features/TCGA-DK-A1A5-01Z-00-DX1.463753DB-C4EA-4973-AF04-4BD0FF39C19D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c03075c64307e08b1605644c2d5f3ed14a608b66 --- /dev/null +++ b/features/TCGA-DK-A1A5-01Z-00-DX1.463753DB-C4EA-4973-AF04-4BD0FF39C19D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19352, "total_number_of_tiles": 19352, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105575, 84121], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 21], "6": [52, 42], "7": [104, 83], "8": [207, 165], "9": [413, 329], "10": [825, 658], "11": [1650, 1315], "12": [3300, 2629], "13": [6599, 5258], "14": [13197, 10516], "15": [26394, 21031], "16": [52788, 42061], "17": [105575, 84121]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "32c953432eeeef66f45fef74b00b7343"} \ No newline at end of file diff --git a/features/TCGA-DK-A1A6-01Z-00-DX1.FC604B50-6BA7-488C-A153-7F9610E6E37B.svs/features.npy b/features/TCGA-DK-A1A6-01Z-00-DX1.FC604B50-6BA7-488C-A153-7F9610E6E37B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..566a648d607ecba22f424922d46650b15aaacb6a --- /dev/null +++ b/features/TCGA-DK-A1A6-01Z-00-DX1.FC604B50-6BA7-488C-A153-7F9610E6E37B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5b9a0300c05d46eb513ba413ad5e3c4eec6b5ff0c14250718c12362e60085b4f +size 158780344 diff --git a/features/TCGA-DK-A1A6-01Z-00-DX1.FC604B50-6BA7-488C-A153-7F9610E6E37B.svs/mask.npy b/features/TCGA-DK-A1A6-01Z-00-DX1.FC604B50-6BA7-488C-A153-7F9610E6E37B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8427eb6aa9b6943382da547d0a62ab451941ce02 --- /dev/null +++ b/features/TCGA-DK-A1A6-01Z-00-DX1.FC604B50-6BA7-488C-A153-7F9610E6E37B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b6bf1869ff8088540fd9f5b3b5f38a2ecf8a74de8b08434fc40a83ac821c5ae +size 145369472 diff --git a/features/TCGA-DK-A1A6-01Z-00-DX1.FC604B50-6BA7-488C-A153-7F9610E6E37B.svs/metadata.json b/features/TCGA-DK-A1A6-01Z-00-DX1.FC604B50-6BA7-488C-A153-7F9610E6E37B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9ca0ca105d9bfbd076c679fc7f4a542fa418eeb6 --- /dev/null +++ b/features/TCGA-DK-A1A6-01Z-00-DX1.FC604B50-6BA7-488C-A153-7F9610E6E37B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19354, "total_number_of_tiles": 19354, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109559, 84910], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 21], "6": [54, 42], "7": [107, 83], "8": [214, 166], "9": [428, 332], "10": [856, 664], "11": [1712, 1327], "12": [3424, 2654], "13": [6848, 5307], "14": [13695, 10614], "15": [27390, 21228], "16": [54780, 42455], "17": [109559, 84910]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d8d64dadf91ed5c2a8d348ef32bdb638"} \ No newline at end of file diff --git a/features/TCGA-DK-A1A7-01Z-00-DX1.57B1442D-8862-447F-98D4-0D52F7B94E62.svs/features.npy b/features/TCGA-DK-A1A7-01Z-00-DX1.57B1442D-8862-447F-98D4-0D52F7B94E62.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5499506b482f5292211b7fb18e12135ac8a38238 --- /dev/null +++ b/features/TCGA-DK-A1A7-01Z-00-DX1.57B1442D-8862-447F-98D4-0D52F7B94E62.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d825407d66dc0b17809a209923835736a18611696d9300f540bf8f6811ae5d21 +size 125857692 diff --git a/features/TCGA-DK-A1A7-01Z-00-DX1.57B1442D-8862-447F-98D4-0D52F7B94E62.svs/mask.npy b/features/TCGA-DK-A1A7-01Z-00-DX1.57B1442D-8862-447F-98D4-0D52F7B94E62.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..81562ca98f29c86303eebfc91b9f5dab13befa1f --- /dev/null +++ b/features/TCGA-DK-A1A7-01Z-00-DX1.57B1442D-8862-447F-98D4-0D52F7B94E62.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e6734029a0b7f264250225bb4a52545316a51d946f2978ce40a056a5e451bb7d +size 92485136 diff --git a/features/TCGA-DK-A1A7-01Z-00-DX1.57B1442D-8862-447F-98D4-0D52F7B94E62.svs/metadata.json b/features/TCGA-DK-A1A7-01Z-00-DX1.57B1442D-8862-447F-98D4-0D52F7B94E62.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2a8d1053cf2a8c5d2cebfcc22ca26d34ff96a940 --- /dev/null +++ b/features/TCGA-DK-A1A7-01Z-00-DX1.57B1442D-8862-447F-98D4-0D52F7B94E62.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15341, "total_number_of_tiles": 15341, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93623, 63206], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 4], "4": [12, 8], "5": [23, 16], "6": [46, 31], "7": [92, 62], "8": [183, 124], "9": [366, 247], "10": [732, 494], "11": [1463, 988], "12": [2926, 1976], "13": [5852, 3951], "14": [11703, 7901], "15": [23406, 15802], "16": [46812, 31603], "17": [93623, 63206]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4320b6403706e5b71998240e242c9616149a444e47697d03f679bc0d200d375f"} \ No newline at end of file diff --git a/features/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.svs/features.npy b/features/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3aeaa7d00bd6ee6a7ceb7fd46599c80fc5b0d8be --- /dev/null +++ b/features/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:67865f188a49e0522c2321f294996c86642068780e4eff2dd30882f15949aa4f +size 247440972 diff --git a/features/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.svs/mask.npy b/features/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0a1519ca99efde30ad3c468abdbea5f3dd5d9811 --- /dev/null +++ b/features/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:322a37aaeb0e427ca10e8f7a5c2a1030849ae48b4396ee9dcf887048b44a11b9 +size 147208928 diff --git a/features/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.svs/metadata.json b/features/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..65fb2bb81821f7a1aa2771dd3f1a1d4414b01910 --- /dev/null +++ b/features/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 30161, "total_number_of_tiles": 30161, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99599, 94592], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [25, 24], "6": [49, 47], "7": [98, 93], "8": [195, 185], "9": [390, 370], "10": [779, 739], "11": [1557, 1478], "12": [3113, 2956], "13": [6225, 5912], "14": [12450, 11824], "15": [24900, 23648], "16": [49800, 47296], "17": [99599, 94592]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "71b7331dcced632af45bcda597cf9121"} \ No newline at end of file diff --git a/features/TCGA-DK-A1AB-01Z-00-DX1.D6032D7B-43EF-469B-A29D-D6DC41DB46D7.svs/features.npy b/features/TCGA-DK-A1AB-01Z-00-DX1.D6032D7B-43EF-469B-A29D-D6DC41DB46D7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9e38b530e890087f757d1d53914d574e2be5b921 --- /dev/null +++ b/features/TCGA-DK-A1AB-01Z-00-DX1.D6032D7B-43EF-469B-A29D-D6DC41DB46D7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e16265ffa37d1de9868bf240c3f9b64b30eb30e8abd8629031577aa2f9632afb +size 129516676 diff --git a/features/TCGA-DK-A1AB-01Z-00-DX1.D6032D7B-43EF-469B-A29D-D6DC41DB46D7.svs/mask.npy b/features/TCGA-DK-A1AB-01Z-00-DX1.D6032D7B-43EF-469B-A29D-D6DC41DB46D7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..136330617ab6321167256918f740e172ca8f38cc --- /dev/null +++ b/features/TCGA-DK-A1AB-01Z-00-DX1.D6032D7B-43EF-469B-A29D-D6DC41DB46D7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a9b316ff47c80d43d9f4d7320ee4ed88cfb368e8b0dae676aa67211fef470c72 +size 103503656 diff --git a/features/TCGA-DK-A1AB-01Z-00-DX1.D6032D7B-43EF-469B-A29D-D6DC41DB46D7.svs/metadata.json b/features/TCGA-DK-A1AB-01Z-00-DX1.D6032D7B-43EF-469B-A29D-D6DC41DB46D7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..40448c147478e594861d9a159966ef8f90b7d997 --- /dev/null +++ b/features/TCGA-DK-A1AB-01Z-00-DX1.D6032D7B-43EF-469B-A29D-D6DC41DB46D7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15787, "total_number_of_tiles": 15787, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [85655, 77328], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 10], "5": [21, 19], "6": [42, 38], "7": [84, 76], "8": [168, 152], "9": [335, 303], "10": [670, 605], "11": [1339, 1209], "12": [2677, 2417], "13": [5354, 4833], "14": [10707, 9666], "15": [21414, 19332], "16": [42828, 38664], "17": [85655, 77328]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8332416d9e7d6355d4f3d315cf58d45c08df6707c3836244266c47e34166cc67"} \ No newline at end of file diff --git a/features/TCGA-DK-A1AC-01Z-00-DX1.6F484315-00FC-4D41-86E2-16200DC61A04.svs/features.npy b/features/TCGA-DK-A1AC-01Z-00-DX1.6F484315-00FC-4D41-86E2-16200DC61A04.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..bd1056c65bbd143185ac24e4eb139b1b5cde8485 --- /dev/null +++ b/features/TCGA-DK-A1AC-01Z-00-DX1.6F484315-00FC-4D41-86E2-16200DC61A04.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2056183a6632955f34cc5f6692990c1da4c82aeff313c5ab75895fabba8a6612 +size 257728788 diff --git a/features/TCGA-DK-A1AC-01Z-00-DX1.6F484315-00FC-4D41-86E2-16200DC61A04.svs/mask.npy b/features/TCGA-DK-A1AC-01Z-00-DX1.6F484315-00FC-4D41-86E2-16200DC61A04.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..17b7a3b5d374789922a325049d3e8f91788b98ea --- /dev/null +++ b/features/TCGA-DK-A1AC-01Z-00-DX1.6F484315-00FC-4D41-86E2-16200DC61A04.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cf96c0cc3b72282c660026610171f1ff98a91b8310d243cd0c12960f2060cb11 +size 187765024 diff --git a/features/TCGA-DK-A1AC-01Z-00-DX1.6F484315-00FC-4D41-86E2-16200DC61A04.svs/metadata.json b/features/TCGA-DK-A1AC-01Z-00-DX1.6F484315-00FC-4D41-86E2-16200DC61A04.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1c4cc61f3e5709926bbc0dd504f8a353270e9b4b --- /dev/null +++ b/features/TCGA-DK-A1AC-01Z-00-DX1.6F484315-00FC-4D41-86E2-16200DC61A04.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31415, "total_number_of_tiles": 31415, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [137447, 87413], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [34, 22], "7": [68, 43], "8": [135, 86], "9": [269, 171], "10": [537, 342], "11": [1074, 683], "12": [2148, 1366], "13": [4296, 2732], "14": [8591, 5464], "15": [17181, 10927], "16": [34362, 21854], "17": [68724, 43707], "18": [137447, 87413]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8dc73dcf6434bd001061994e2497de869fe2a41627cd145a1426f98236fecb56"} \ No newline at end of file diff --git a/features/TCGA-DK-A1AD-01Z-00-DX1.1B438E00-C022-4CB8-994D-C4EE8E009F00.svs/features.npy b/features/TCGA-DK-A1AD-01Z-00-DX1.1B438E00-C022-4CB8-994D-C4EE8E009F00.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..70a52f141036d2ec69e9274599d4a3d74f6a344f --- /dev/null +++ b/features/TCGA-DK-A1AD-01Z-00-DX1.1B438E00-C022-4CB8-994D-C4EE8E009F00.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c3ae2fe5aa3282c0d9e0911730850e476c644dd52aa87c2388f111d9c6b5a898 +size 145719576 diff --git a/features/TCGA-DK-A1AD-01Z-00-DX1.1B438E00-C022-4CB8-994D-C4EE8E009F00.svs/mask.npy b/features/TCGA-DK-A1AD-01Z-00-DX1.1B438E00-C022-4CB8-994D-C4EE8E009F00.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..bf38a0288aa436f6405552c35b80677e4852f681 --- /dev/null +++ b/features/TCGA-DK-A1AD-01Z-00-DX1.1B438E00-C022-4CB8-994D-C4EE8E009F00.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:56fd5fe1f6a378d85cc023eca320275045b977a2558f14f1e8b6589e246d0405 +size 176568688 diff --git a/features/TCGA-DK-A1AD-01Z-00-DX1.1B438E00-C022-4CB8-994D-C4EE8E009F00.svs/metadata.json b/features/TCGA-DK-A1AD-01Z-00-DX1.1B438E00-C022-4CB8-994D-C4EE8E009F00.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6840e461fb6020940d7da180a4acefaa63b272ab --- /dev/null +++ b/features/TCGA-DK-A1AD-01Z-00-DX1.1B438E00-C022-4CB8-994D-C4EE8E009F00.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17762, "total_number_of_tiles": 17762, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 92982], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 23], "6": [60, 46], "7": [119, 91], "8": [238, 182], "9": [475, 364], "10": [950, 727], "11": [1899, 1453], "12": [3798, 2906], "13": [7595, 5812], "14": [15189, 11623], "15": [30378, 23246], "16": [60756, 46491], "17": [121511, 92982]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e6d1925096fac543bc34ae684ea07e1e"} \ No newline at end of file diff --git a/features/TCGA-DK-A1AE-01Z-00-DX1.85F1B791-E0CD-479F-9C2D-E411981E4471.svs/features.npy b/features/TCGA-DK-A1AE-01Z-00-DX1.85F1B791-E0CD-479F-9C2D-E411981E4471.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..68c888ba694faef0a7b32da879dd736dd707429e --- /dev/null +++ b/features/TCGA-DK-A1AE-01Z-00-DX1.85F1B791-E0CD-479F-9C2D-E411981E4471.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5bfcfc788a29cf6a5c119926b3fb36bbf8c8eb02a7c9599947d7d42704625bd1 +size 154506060 diff --git a/features/TCGA-DK-A1AE-01Z-00-DX1.85F1B791-E0CD-479F-9C2D-E411981E4471.svs/mask.npy b/features/TCGA-DK-A1AE-01Z-00-DX1.85F1B791-E0CD-479F-9C2D-E411981E4471.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..01126efdea07a0aa134cb9f3438922d0b0185489 --- /dev/null +++ b/features/TCGA-DK-A1AE-01Z-00-DX1.85F1B791-E0CD-479F-9C2D-E411981E4471.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5cb3cc7aca9d3fb1d3a9e32c9f9ac9cd9023f16e786678ab633ee114027fd9f0 +size 128205744 diff --git a/features/TCGA-DK-A1AE-01Z-00-DX1.85F1B791-E0CD-479F-9C2D-E411981E4471.svs/metadata.json b/features/TCGA-DK-A1AE-01Z-00-DX1.85F1B791-E0CD-479F-9C2D-E411981E4471.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0f6865aafdd3eb83302a8f7225bc1fceddaf7a3f --- /dev/null +++ b/features/TCGA-DK-A1AE-01Z-00-DX1.85F1B791-E0CD-479F-9C2D-E411981E4471.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18833, "total_number_of_tiles": 18833, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93623, 87623], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [23, 22], "6": [46, 43], "7": [92, 86], "8": [183, 172], "9": [366, 343], "10": [732, 685], "11": [1463, 1370], "12": [2926, 2739], "13": [5852, 5477], "14": [11703, 10953], "15": [23406, 21906], "16": [46812, 43812], "17": [93623, 87623]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7b0c3d03b9ad193f496b5e22e1e81a04"} \ No newline at end of file diff --git a/features/TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs/features.npy b/features/TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b0e4db89c2811a4c5c7ceec601f10f17e894ee8f --- /dev/null +++ b/features/TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7155cdb5d981b122d89759e89cd18379718d9585b164bed441013e89a48398cb +size 269534344 diff --git a/features/TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs/mask.npy b/features/TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..25241c90bdee1459a803aa8c8dd016ad6dd74b79 --- /dev/null +++ b/features/TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:031917d55f0ca8c93b1cba0a7f8b7b47eccd40abffeef226d4b72494c60cf37f +size 171600968 diff --git a/features/TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs/metadata.json b/features/TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e1910ce38eaeeffe9e6a17c9915569bccc4d9995 --- /dev/null +++ b/features/TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32854, "total_number_of_tiles": 32854, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119519, 91873], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 23], "6": [59, 45], "7": [117, 90], "8": [234, 180], "9": [467, 359], "10": [934, 718], "11": [1868, 1436], "12": [3735, 2872], "13": [7470, 5743], "14": [14940, 11485], "15": [29880, 22969], "16": [59760, 45937], "17": [119519, 91873]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "965c10b5d9e330c2a15b4353ebe3f57c"} \ No newline at end of file diff --git a/features/TCGA-DK-A1AG-01Z-00-DX1.1794B149-3C25-4C51-B96F-1EA24BCBBB3C.svs/features.npy b/features/TCGA-DK-A1AG-01Z-00-DX1.1794B149-3C25-4C51-B96F-1EA24BCBBB3C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..df6e5bfd95fd18856be813da736c6cf100fa0953 --- /dev/null +++ b/features/TCGA-DK-A1AG-01Z-00-DX1.1794B149-3C25-4C51-B96F-1EA24BCBBB3C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:91ae18c277fc30f301d6e7ee13cd0e0fb07877b0779729c033055cf9574452dd +size 188987472 diff --git a/features/TCGA-DK-A1AG-01Z-00-DX1.1794B149-3C25-4C51-B96F-1EA24BCBBB3C.svs/mask.npy b/features/TCGA-DK-A1AG-01Z-00-DX1.1794B149-3C25-4C51-B96F-1EA24BCBBB3C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..36574c22f7beab11bbfa0797d642fa2f0c13550b --- /dev/null +++ b/features/TCGA-DK-A1AG-01Z-00-DX1.1794B149-3C25-4C51-B96F-1EA24BCBBB3C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d5ea2c4c0089c6e14a976760ce77f95ad35f547a0ccd95dc1b2e7e95ecaae26d +size 167502428 diff --git a/features/TCGA-DK-A1AG-01Z-00-DX1.1794B149-3C25-4C51-B96F-1EA24BCBBB3C.svs/metadata.json b/features/TCGA-DK-A1AG-01Z-00-DX1.1794B149-3C25-4C51-B96F-1EA24BCBBB3C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f9e53e0d857d471dcf6260bcaacdf38531b9ff58 --- /dev/null +++ b/features/TCGA-DK-A1AG-01Z-00-DX1.1794B149-3C25-4C51-B96F-1EA24BCBBB3C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23036, "total_number_of_tiles": 23036, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 86794], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 22], "6": [61, 43], "7": [121, 85], "8": [242, 170], "9": [483, 340], "10": [965, 679], "11": [1930, 1357], "12": [3860, 2713], "13": [7719, 5425], "14": [15438, 10850], "15": [30876, 21699], "16": [61752, 43397], "17": [123503, 86794]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e46fc8f5a9e739f8bbe30fdf0bcab4eb"} \ No newline at end of file diff --git a/features/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.svs/features.npy b/features/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a65427b67b4ad37ef4ddef5ff416e8b964283f60 --- /dev/null +++ b/features/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:119b985c04e69d2c75a0eac8718a1134262129dbeef01652f2451d9e45dfbfdd +size 157164156 diff --git a/features/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.svs/mask.npy b/features/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..11896ae4dfd85e4e394d1a3566f4add4961cf0c3 --- /dev/null +++ b/features/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bd8bc4cdf4f4c70a961f566c0f3552e0d7ff73097375f2bc1ba6bcc72e6c5136 +size 107991428 diff --git a/features/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.svs/metadata.json b/features/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9f9bf653863c25d87450bad66082db7e61ef0186 --- /dev/null +++ b/features/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19157, "total_number_of_tiles": 19157, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99599, 69384], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 9], "5": [25, 17], "6": [49, 34], "7": [98, 68], "8": [195, 136], "9": [390, 272], "10": [779, 543], "11": [1557, 1085], "12": [3113, 2169], "13": [6225, 4337], "14": [12450, 8673], "15": [24900, 17346], "16": [49800, 34692], "17": [99599, 69384]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "de51575b95773c5b46f69996a09d7465"} \ No newline at end of file diff --git a/features/TCGA-DK-A2I1-01Z-00-DX1.7EBA720C-60F8-4012-95D2-F4B10FB74A18.svs/features.npy b/features/TCGA-DK-A2I1-01Z-00-DX1.7EBA720C-60F8-4012-95D2-F4B10FB74A18.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ad5e6c89fe2f815f0ce3ee86bb5b1a5c6580b8e8 --- /dev/null +++ b/features/TCGA-DK-A2I1-01Z-00-DX1.7EBA720C-60F8-4012-95D2-F4B10FB74A18.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c1c8ed7bb6ea722a233ebe40a6d48b3d1d3dd884d9c6a97a2f224e5454466513 +size 59872920 diff --git a/features/TCGA-DK-A2I1-01Z-00-DX1.7EBA720C-60F8-4012-95D2-F4B10FB74A18.svs/mask.npy b/features/TCGA-DK-A2I1-01Z-00-DX1.7EBA720C-60F8-4012-95D2-F4B10FB74A18.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..45380b523df45a65b2c7433a204ea9d72bcaabf2 --- /dev/null +++ b/features/TCGA-DK-A2I1-01Z-00-DX1.7EBA720C-60F8-4012-95D2-F4B10FB74A18.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3bea88ccd6de814eef35c65a9ecb0e8bc9f2cdc26a4fbc286ecdfb19289c30d1 +size 91351256 diff --git a/features/TCGA-DK-A2I1-01Z-00-DX1.7EBA720C-60F8-4012-95D2-F4B10FB74A18.svs/metadata.json b/features/TCGA-DK-A2I1-01Z-00-DX1.7EBA720C-60F8-4012-95D2-F4B10FB74A18.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..38cc2cbef24f795ddf0c226f59289bba6d3d7f51 --- /dev/null +++ b/features/TCGA-DK-A2I1-01Z-00-DX1.7EBA720C-60F8-4012-95D2-F4B10FB74A18.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 7298, "total_number_of_tiles": 7298, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [87647, 66704], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 9], "5": [22, 17], "6": [43, 33], "7": [86, 66], "8": [172, 131], "9": [343, 261], "10": [685, 522], "11": [1370, 1043], "12": [2739, 2085], "13": [5478, 4169], "14": [10956, 8338], "15": [21912, 16676], "16": [43824, 33352], "17": [87647, 66704]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "cf7a82693bb65e786f662caf54bf92368b197da456f98e8b2e31fffaeb780dfe"} \ No newline at end of file diff --git a/features/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.svs/features.npy b/features/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..21eed5e8f4059afc6ceb9f083acff91eaa65f825 --- /dev/null +++ b/features/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a544d376a025edf9d7a7b6310491501e5ae91c3e02dbf1a181b1d5d1d8db344f +size 203311656 diff --git a/features/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.svs/mask.npy b/features/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5c0cc93db3b03e3315c755299ff55eb7a6043762 --- /dev/null +++ b/features/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e5d7e873ef5966c611cf00969d1e16fb79e7a989a734223d8c81613dba6be5fb +size 132941132 diff --git a/features/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.svs/metadata.json b/features/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..85a32997fea015e02ac221660a4bfacfc0affac7 --- /dev/null +++ b/features/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24782, "total_number_of_tiles": 24782, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113543, 74915], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [28, 19], "6": [56, 37], "7": [111, 74], "8": [222, 147], "9": [444, 293], "10": [888, 586], "11": [1775, 1171], "12": [3549, 2342], "13": [7097, 4683], "14": [14193, 9365], "15": [28386, 18729], "16": [56772, 37458], "17": [113543, 74915]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f38da0bf2d0a2fbd9b2ea4f564411da4"} \ No newline at end of file diff --git a/features/TCGA-DK-A2I4-01Z-00-DX1.2DE79A2D-575E-4D5A-A6E3-89D551A5FA46.svs/features.npy b/features/TCGA-DK-A2I4-01Z-00-DX1.2DE79A2D-575E-4D5A-A6E3-89D551A5FA46.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9603dd479873598aa73bfed41f2f28db6d83f108 --- /dev/null +++ b/features/TCGA-DK-A2I4-01Z-00-DX1.2DE79A2D-575E-4D5A-A6E3-89D551A5FA46.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d20cec52b691cc68c21ad0a046909515bbd385a08763f4cc4fbb288569d51cc4 +size 85986252 diff --git a/features/TCGA-DK-A2I4-01Z-00-DX1.2DE79A2D-575E-4D5A-A6E3-89D551A5FA46.svs/mask.npy b/features/TCGA-DK-A2I4-01Z-00-DX1.2DE79A2D-575E-4D5A-A6E3-89D551A5FA46.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..290e5526516bfe1eb84e8a2f14f929ec1447e4a2 --- /dev/null +++ b/features/TCGA-DK-A2I4-01Z-00-DX1.2DE79A2D-575E-4D5A-A6E3-89D551A5FA46.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:43b35e840aa0952c8bfb5bc8df57b6acc55c44ec8967d7d90c184f944a417ab2 +size 132941132 diff --git a/features/TCGA-DK-A2I4-01Z-00-DX1.2DE79A2D-575E-4D5A-A6E3-89D551A5FA46.svs/metadata.json b/features/TCGA-DK-A2I4-01Z-00-DX1.2DE79A2D-575E-4D5A-A6E3-89D551A5FA46.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8cfb920793500010817a8d21f9acc352ed4cf483 --- /dev/null +++ b/features/TCGA-DK-A2I4-01Z-00-DX1.2DE79A2D-575E-4D5A-A6E3-89D551A5FA46.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10481, "total_number_of_tiles": 10481, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113543, 74915], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [28, 19], "6": [56, 37], "7": [111, 74], "8": [222, 147], "9": [444, 293], "10": [888, 586], "11": [1775, 1171], "12": [3549, 2342], "13": [7097, 4683], "14": [14193, 9365], "15": [28386, 18729], "16": [56772, 37458], "17": [113543, 74915]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4392f1ead358a502f05f3ff93a95935450b942b68f2800a0831f552cb781a214"} \ No newline at end of file diff --git a/features/TCGA-DK-A2I6-01Z-00-DX1.7BF86D3B-D4F7-47F9-B021-7FD6B673A238.svs/features.npy b/features/TCGA-DK-A2I6-01Z-00-DX1.7BF86D3B-D4F7-47F9-B021-7FD6B673A238.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1bd4badf0ec1340662c762eab0250889ee3adb33 --- /dev/null +++ b/features/TCGA-DK-A2I6-01Z-00-DX1.7BF86D3B-D4F7-47F9-B021-7FD6B673A238.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c01e07dbaa8ba6786a942985cea7cd37823d54324e471eeee413d356ea5211c1 +size 204845804 diff --git a/features/TCGA-DK-A2I6-01Z-00-DX1.7BF86D3B-D4F7-47F9-B021-7FD6B673A238.svs/mask.npy b/features/TCGA-DK-A2I6-01Z-00-DX1.7BF86D3B-D4F7-47F9-B021-7FD6B673A238.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5e63dadf6a9bea8e6b6fac1842aa0dda01176082 --- /dev/null +++ b/features/TCGA-DK-A2I6-01Z-00-DX1.7BF86D3B-D4F7-47F9-B021-7FD6B673A238.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c22e534fdd0afa557682167ec469b3efcd10b80b1490f66baa99c8ac4a24dc1e +size 131436272 diff --git a/features/TCGA-DK-A2I6-01Z-00-DX1.7BF86D3B-D4F7-47F9-B021-7FD6B673A238.svs/metadata.json b/features/TCGA-DK-A2I6-01Z-00-DX1.7BF86D3B-D4F7-47F9-B021-7FD6B673A238.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0d4c38e678fd787fb503aa48fed0467080914bb8 --- /dev/null +++ b/features/TCGA-DK-A2I6-01Z-00-DX1.7BF86D3B-D4F7-47F9-B021-7FD6B673A238.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24969, "total_number_of_tiles": 24969, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111551, 75393], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [28, 19], "6": [55, 37], "7": [109, 74], "8": [218, 148], "9": [436, 295], "10": [872, 590], "11": [1743, 1179], "12": [3486, 2357], "13": [6972, 4713], "14": [13944, 9425], "15": [27888, 18849], "16": [55776, 37697], "17": [111551, 75393]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a4d22d4164ea6676bb07e4a95ec35a3d"} \ No newline at end of file diff --git a/features/TCGA-DK-A3IK-01Z-00-DX1.2C3A7E93-113C-4321-94B1-7A228E4897F0.svs/features.npy b/features/TCGA-DK-A3IK-01Z-00-DX1.2C3A7E93-113C-4321-94B1-7A228E4897F0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e11f890ed83fed34d24b344095c9a403ec9ea6f4 --- /dev/null +++ b/features/TCGA-DK-A3IK-01Z-00-DX1.2C3A7E93-113C-4321-94B1-7A228E4897F0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8825d3047bdf38d89cf22f9f0a0d02214f197204a16ee1cb769ea986ad52260f +size 94182048 diff --git a/features/TCGA-DK-A3IK-01Z-00-DX1.2C3A7E93-113C-4321-94B1-7A228E4897F0.svs/mask.npy b/features/TCGA-DK-A3IK-01Z-00-DX1.2C3A7E93-113C-4321-94B1-7A228E4897F0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..45a9f065ad003cda4933ada351aabd47bf27c87a --- /dev/null +++ b/features/TCGA-DK-A3IK-01Z-00-DX1.2C3A7E93-113C-4321-94B1-7A228E4897F0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2946d20fde3309f57aabd654d5c7eb4071d7089534cb78aca603e7811b2ce8fb +size 97689408 diff --git a/features/TCGA-DK-A3IK-01Z-00-DX1.2C3A7E93-113C-4321-94B1-7A228E4897F0.svs/metadata.json b/features/TCGA-DK-A3IK-01Z-00-DX1.2C3A7E93-113C-4321-94B1-7A228E4897F0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..510fed62d8dac2803a8d464079ce78dcfd71eec5 --- /dev/null +++ b/features/TCGA-DK-A3IK-01Z-00-DX1.2C3A7E93-113C-4321-94B1-7A228E4897F0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11480, "total_number_of_tiles": 11480, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [81671, 76539], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [10, 10], "5": [20, 19], "6": [40, 38], "7": [80, 75], "8": [160, 150], "9": [320, 299], "10": [639, 598], "11": [1277, 1196], "12": [2553, 2392], "13": [5105, 4784], "14": [10209, 9568], "15": [20418, 19135], "16": [40836, 38270], "17": [81671, 76539]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5bd28f33ec9824338467b68abd2640ac"} \ No newline at end of file diff --git a/features/TCGA-DK-A3IL-01Z-00-DX1.B3F0006E-CB53-4475-9576-3411C835B25A.svs/features.npy b/features/TCGA-DK-A3IL-01Z-00-DX1.B3F0006E-CB53-4475-9576-3411C835B25A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..93e156d72d28398b92e6c5d59c7105f154f4f8ba --- /dev/null +++ b/features/TCGA-DK-A3IL-01Z-00-DX1.B3F0006E-CB53-4475-9576-3411C835B25A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cb3f3522d8329d7c366f10c81f1133558211790fe82df2d8c48211e041819148 +size 149591864 diff --git a/features/TCGA-DK-A3IL-01Z-00-DX1.B3F0006E-CB53-4475-9576-3411C835B25A.svs/mask.npy b/features/TCGA-DK-A3IL-01Z-00-DX1.B3F0006E-CB53-4475-9576-3411C835B25A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6c13329cb120eedd1d0fdd1474f5658d960ebced --- /dev/null +++ b/features/TCGA-DK-A3IL-01Z-00-DX1.B3F0006E-CB53-4475-9576-3411C835B25A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:33f2bc1e2b6a88b60b6140ef344c652eb9ac2dec8d226a72730a27934d084d37 +size 108217520 diff --git a/features/TCGA-DK-A3IL-01Z-00-DX1.B3F0006E-CB53-4475-9576-3411C835B25A.svs/metadata.json b/features/TCGA-DK-A3IL-01Z-00-DX1.B3F0006E-CB53-4475-9576-3411C835B25A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..abe9cce3228dd33b0a7812c8c3007e5ff90eab9c --- /dev/null +++ b/features/TCGA-DK-A3IL-01Z-00-DX1.B3F0006E-CB53-4475-9576-3411C835B25A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18234, "total_number_of_tiles": 18234, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [91631, 75577], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [23, 19], "6": [45, 37], "7": [90, 74], "8": [179, 148], "9": [358, 296], "10": [716, 591], "11": [1432, 1181], "12": [2864, 2362], "13": [5727, 4724], "14": [11454, 9448], "15": [22908, 18895], "16": [45816, 37789], "17": [91631, 75577]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "577126a0dd4e39d6021b56440e3a8c14"} \ No newline at end of file diff --git a/features/TCGA-DK-A3IM-01Z-00-DX1.ED1A8B22-566E-4A95-AF6D-7C9E536BE2B7.svs/features.npy b/features/TCGA-DK-A3IM-01Z-00-DX1.ED1A8B22-566E-4A95-AF6D-7C9E536BE2B7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..85de38c685251664bb438da7ffb6232e070ebef0 --- /dev/null +++ b/features/TCGA-DK-A3IM-01Z-00-DX1.ED1A8B22-566E-4A95-AF6D-7C9E536BE2B7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:96efbf57444150fabecac21360a2bac8d3f8bfcc320495f5573f1d89efd27644 +size 242067352 diff --git a/features/TCGA-DK-A3IM-01Z-00-DX1.ED1A8B22-566E-4A95-AF6D-7C9E536BE2B7.svs/mask.npy b/features/TCGA-DK-A3IM-01Z-00-DX1.ED1A8B22-566E-4A95-AF6D-7C9E536BE2B7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e441d9c274e5815d73227b46b974265ee2f57ab4 --- /dev/null +++ b/features/TCGA-DK-A3IM-01Z-00-DX1.ED1A8B22-566E-4A95-AF6D-7C9E536BE2B7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:12be371214d4ce4e346f91e209fb180ff89894657c4f396163b34e9bb3029717 +size 170486096 diff --git a/features/TCGA-DK-A3IM-01Z-00-DX1.ED1A8B22-566E-4A95-AF6D-7C9E536BE2B7.svs/metadata.json b/features/TCGA-DK-A3IM-01Z-00-DX1.ED1A8B22-566E-4A95-AF6D-7C9E536BE2B7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0597fa83d9ec4bcb0b6289ebca9a461c102b6f4b --- /dev/null +++ b/features/TCGA-DK-A3IM-01Z-00-DX1.ED1A8B22-566E-4A95-AF6D-7C9E536BE2B7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29506, "total_number_of_tiles": 29506, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [117527, 92828], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 23], "6": [58, 46], "7": [115, 91], "8": [230, 182], "9": [460, 363], "10": [919, 726], "11": [1837, 1451], "12": [3673, 2901], "13": [7346, 5802], "14": [14691, 11604], "15": [29382, 23207], "16": [58764, 46414], "17": [117527, 92828]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4de0913c88ee06d131d7b1913984809b"} \ No newline at end of file diff --git a/features/TCGA-DK-A3IN-01Z-00-DX1.2AB0F8FC-CC41-4277-A8AF-8AE709D98DA0.svs/features.npy b/features/TCGA-DK-A3IN-01Z-00-DX1.2AB0F8FC-CC41-4277-A8AF-8AE709D98DA0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..766ec293c49f0c32784108db7ccb4785784b00a0 --- /dev/null +++ b/features/TCGA-DK-A3IN-01Z-00-DX1.2AB0F8FC-CC41-4277-A8AF-8AE709D98DA0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:af6ff46c2e4828e40109b53b2aaa328c2092510b533204d0b16914c023e54724 +size 142068796 diff --git a/features/TCGA-DK-A3IN-01Z-00-DX1.2AB0F8FC-CC41-4277-A8AF-8AE709D98DA0.svs/mask.npy b/features/TCGA-DK-A3IN-01Z-00-DX1.2AB0F8FC-CC41-4277-A8AF-8AE709D98DA0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1a35697f1ce5351323ba3ae07240f150a7b33496 --- /dev/null +++ b/features/TCGA-DK-A3IN-01Z-00-DX1.2AB0F8FC-CC41-4277-A8AF-8AE709D98DA0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a80ffe3792d426be2425096c622c5d215dfb913b222e3daf00e978dc16d8857f +size 94223972 diff --git a/features/TCGA-DK-A3IN-01Z-00-DX1.2AB0F8FC-CC41-4277-A8AF-8AE709D98DA0.svs/metadata.json b/features/TCGA-DK-A3IN-01Z-00-DX1.2AB0F8FC-CC41-4277-A8AF-8AE709D98DA0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..48b59880190030ce954b41ff66f2da1f186cbb81 --- /dev/null +++ b/features/TCGA-DK-A3IN-01Z-00-DX1.2AB0F8FC-CC41-4277-A8AF-8AE709D98DA0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17317, "total_number_of_tiles": 17317, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97607, 61775], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 4], "4": [12, 8], "5": [24, 16], "6": [48, 31], "7": [96, 61], "8": [191, 121], "9": [382, 242], "10": [763, 483], "11": [1526, 966], "12": [3051, 1931], "13": [6101, 3861], "14": [12201, 7722], "15": [24402, 15444], "16": [48804, 30888], "17": [97607, 61775]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7df92d50e7d691d1145bba5bd794163f"} \ No newline at end of file diff --git a/features/TCGA-DK-A3IQ-01Z-00-DX1.D68A6FD8-6E48-4FC1-BAF3-B80D6198EFAE.svs/features.npy b/features/TCGA-DK-A3IQ-01Z-00-DX1.D68A6FD8-6E48-4FC1-BAF3-B80D6198EFAE.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cab505c2113be030f0f705cb93133ec04545b1c4 --- /dev/null +++ b/features/TCGA-DK-A3IQ-01Z-00-DX1.D68A6FD8-6E48-4FC1-BAF3-B80D6198EFAE.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2c570589eda41a1cdc370935c8ee37043a54f72689caac12f13d9c98601c1818 +size 165843988 diff --git a/features/TCGA-DK-A3IQ-01Z-00-DX1.D68A6FD8-6E48-4FC1-BAF3-B80D6198EFAE.svs/mask.npy b/features/TCGA-DK-A3IQ-01Z-00-DX1.D68A6FD8-6E48-4FC1-BAF3-B80D6198EFAE.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..12cb51e7a6159969da12e3473c590d7c7ef091ad --- /dev/null +++ b/features/TCGA-DK-A3IQ-01Z-00-DX1.D68A6FD8-6E48-4FC1-BAF3-B80D6198EFAE.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d95427a7b59a93400c5d34d81bbaaddb4096c468f46ac52514f83edd0dc95645 +size 127646044 diff --git a/features/TCGA-DK-A3IQ-01Z-00-DX1.D68A6FD8-6E48-4FC1-BAF3-B80D6198EFAE.svs/metadata.json b/features/TCGA-DK-A3IQ-01Z-00-DX1.D68A6FD8-6E48-4FC1-BAF3-B80D6198EFAE.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c75bee3215a94032c2454467cc34ca22f8991e08 --- /dev/null +++ b/features/TCGA-DK-A3IQ-01Z-00-DX1.D68A6FD8-6E48-4FC1-BAF3-B80D6198EFAE.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20215, "total_number_of_tiles": 20215, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [145415, 56169], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [9, 4], "5": [18, 7], "6": [36, 14], "7": [72, 28], "8": [143, 55], "9": [285, 110], "10": [569, 220], "11": [1137, 439], "12": [2273, 878], "13": [4545, 1756], "14": [9089, 3511], "15": [18177, 7022], "16": [36354, 14043], "17": [72708, 28085], "18": [145415, 56169]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8d4524568b58e9f1d8d5e8564b8437df820fb3340b83384a7a3769556037d02c"} \ No newline at end of file diff --git a/features/TCGA-DK-A3IS-01Z-00-DX1.31CABE32-36D7-4920-BF5A-9C9D8B54320F.svs/features.npy b/features/TCGA-DK-A3IS-01Z-00-DX1.31CABE32-36D7-4920-BF5A-9C9D8B54320F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..136045e8bb5488f650d087851f00d7dc8734e20d --- /dev/null +++ b/features/TCGA-DK-A3IS-01Z-00-DX1.31CABE32-36D7-4920-BF5A-9C9D8B54320F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:28974b5d326cdf2be3491fc2f419086c0c6bba8cf9ef80168e977d12818ca0eb +size 127293392 diff --git a/features/TCGA-DK-A3IS-01Z-00-DX1.31CABE32-36D7-4920-BF5A-9C9D8B54320F.svs/mask.npy b/features/TCGA-DK-A3IS-01Z-00-DX1.31CABE32-36D7-4920-BF5A-9C9D8B54320F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4dd84faab2325da463715db4838c40d6befd96eb --- /dev/null +++ b/features/TCGA-DK-A3IS-01Z-00-DX1.31CABE32-36D7-4920-BF5A-9C9D8B54320F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e1f1643bf19053940cf274f5145e6d222135e33511441d08b80fe036a44bd584 +size 123876556 diff --git a/features/TCGA-DK-A3IS-01Z-00-DX1.31CABE32-36D7-4920-BF5A-9C9D8B54320F.svs/metadata.json b/features/TCGA-DK-A3IS-01Z-00-DX1.31CABE32-36D7-4920-BF5A-9C9D8B54320F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ca8ed2531129a354b913aa146b3465a0b4f2e4cf --- /dev/null +++ b/features/TCGA-DK-A3IS-01Z-00-DX1.31CABE32-36D7-4920-BF5A-9C9D8B54320F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15516, "total_number_of_tiles": 15516, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105575, 75084], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [26, 19], "6": [52, 37], "7": [104, 74], "8": [207, 147], "9": [413, 294], "10": [825, 587], "11": [1650, 1174], "12": [3300, 2347], "13": [6599, 4693], "14": [13197, 9386], "15": [26394, 18771], "16": [52788, 37542], "17": [105575, 75084]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b681f1916bb7995499dbf90990c22d93"} \ No newline at end of file diff --git a/features/TCGA-DK-A3IT-01Z-00-DX1.819410F8-5E45-484B-8D98-0A3DAB314C6E.svs/features.npy b/features/TCGA-DK-A3IT-01Z-00-DX1.819410F8-5E45-484B-8D98-0A3DAB314C6E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3823d5badeb9457649fb677cdcff5bc9c6af4a8d --- /dev/null +++ b/features/TCGA-DK-A3IT-01Z-00-DX1.819410F8-5E45-484B-8D98-0A3DAB314C6E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:933df330873918c4d6827dc002e9804b03b50212fc7635212d3c16bc7791eb27 +size 129976100 diff --git a/features/TCGA-DK-A3IT-01Z-00-DX1.819410F8-5E45-484B-8D98-0A3DAB314C6E.svs/mask.npy b/features/TCGA-DK-A3IT-01Z-00-DX1.819410F8-5E45-484B-8D98-0A3DAB314C6E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..2c0db1b71a594c91ef96fc6bf14f76b41cf62811 --- /dev/null +++ b/features/TCGA-DK-A3IT-01Z-00-DX1.819410F8-5E45-484B-8D98-0A3DAB314C6E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5d06a01b71bfa31b7ca482dce7dd0b24e411564f6a6d308857f252a999c76cfe +size 140278760 diff --git a/features/TCGA-DK-A3IT-01Z-00-DX1.819410F8-5E45-484B-8D98-0A3DAB314C6E.svs/metadata.json b/features/TCGA-DK-A3IT-01Z-00-DX1.819410F8-5E45-484B-8D98-0A3DAB314C6E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e47242243031d30272faf48ba95a7126104cdbe8 --- /dev/null +++ b/features/TCGA-DK-A3IT-01Z-00-DX1.819410F8-5E45-484B-8D98-0A3DAB314C6E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15843, "total_number_of_tiles": 15843, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [103583, 86660], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 22], "6": [51, 43], "7": [102, 85], "8": [203, 170], "9": [405, 339], "10": [810, 678], "11": [1619, 1355], "12": [3237, 2709], "13": [6474, 5417], "14": [12948, 10833], "15": [25896, 21665], "16": [51792, 43330], "17": [103583, 86660]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "773fd27db120ecda86ce58f7e6b02b83"} \ No newline at end of file diff --git a/features/TCGA-DK-A3IU-01Z-00-DX1.A624F891-20E8-48F6-8FAE-D046F30E257C.svs/features.npy b/features/TCGA-DK-A3IU-01Z-00-DX1.A624F891-20E8-48F6-8FAE-D046F30E257C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f7245aebd85d0ee8154f489f54b1e755b69f27fe --- /dev/null +++ b/features/TCGA-DK-A3IU-01Z-00-DX1.A624F891-20E8-48F6-8FAE-D046F30E257C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6b3414bc0b4ddfe7f2bf4dd8a4ca7c949a5041086e49725921b05f824d737520 +size 207758224 diff --git a/features/TCGA-DK-A3IU-01Z-00-DX1.A624F891-20E8-48F6-8FAE-D046F30E257C.svs/mask.npy b/features/TCGA-DK-A3IU-01Z-00-DX1.A624F891-20E8-48F6-8FAE-D046F30E257C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..294732a043568181bfc3d3d301e9529bbb46b705 --- /dev/null +++ b/features/TCGA-DK-A3IU-01Z-00-DX1.A624F891-20E8-48F6-8FAE-D046F30E257C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a63a9a3ffaec458e3b29dfec45ab928e100088f73e40f16cfc97dba31b3d0094 +size 216012608 diff --git a/features/TCGA-DK-A3IU-01Z-00-DX1.A624F891-20E8-48F6-8FAE-D046F30E257C.svs/metadata.json b/features/TCGA-DK-A3IU-01Z-00-DX1.A624F891-20E8-48F6-8FAE-D046F30E257C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8abf8d58bb6c4718ad3759fe84268b33811f3d30 --- /dev/null +++ b/features/TCGA-DK-A3IU-01Z-00-DX1.A624F891-20E8-48F6-8FAE-D046F30E257C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25324, "total_number_of_tiles": 25324, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [159359, 86752], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [20, 11], "6": [39, 22], "7": [78, 43], "8": [156, 85], "9": [312, 170], "10": [623, 339], "11": [1245, 678], "12": [2490, 1356], "13": [4980, 2711], "14": [9960, 5422], "15": [19920, 10844], "16": [39840, 21688], "17": [79680, 43376], "18": [159359, 86752]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1dd3f98184bc84f0f244d8a5379b61c4211f05027b2bc2c27f86af664fbd5afc"} \ No newline at end of file diff --git a/features/TCGA-DK-A3IV-01Z-00-DX1.3E7EDFE4-61F6-4EA8-9A29-D70C2785E408.svs/features.npy b/features/TCGA-DK-A3IV-01Z-00-DX1.3E7EDFE4-61F6-4EA8-9A29-D70C2785E408.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cf830aba9c3992818b3fad524827c0b9b42f8cb0 --- /dev/null +++ b/features/TCGA-DK-A3IV-01Z-00-DX1.3E7EDFE4-61F6-4EA8-9A29-D70C2785E408.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ef175a6765bafac476ca6b7d6cd9b1d8825b7d76982f2ee6a62a9d6943e21c01 +size 279986240 diff --git a/features/TCGA-DK-A3IV-01Z-00-DX1.3E7EDFE4-61F6-4EA8-9A29-D70C2785E408.svs/mask.npy b/features/TCGA-DK-A3IV-01Z-00-DX1.3E7EDFE4-61F6-4EA8-9A29-D70C2785E408.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..32a6cef47fba8a65ccf9c85c921e281301c582b0 --- /dev/null +++ b/features/TCGA-DK-A3IV-01Z-00-DX1.3E7EDFE4-61F6-4EA8-9A29-D70C2785E408.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b5f749ea13f8c8b9f9beca93fcbfa22dd93a893921436feb98a6e93d85ea5640 +size 172649668 diff --git a/features/TCGA-DK-A3IV-01Z-00-DX1.3E7EDFE4-61F6-4EA8-9A29-D70C2785E408.svs/metadata.json b/features/TCGA-DK-A3IV-01Z-00-DX1.3E7EDFE4-61F6-4EA8-9A29-D70C2785E408.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1246f81eba1a9a4434a8b97fb2b1f485c05371d1 --- /dev/null +++ b/features/TCGA-DK-A3IV-01Z-00-DX1.3E7EDFE4-61F6-4EA8-9A29-D70C2785E408.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 34128, "total_number_of_tiles": 34128, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 90921], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 23], "6": [60, 45], "7": [119, 89], "8": [238, 178], "9": [475, 356], "10": [950, 711], "11": [1899, 1421], "12": [3798, 2842], "13": [7595, 5683], "14": [15189, 11366], "15": [30378, 22731], "16": [60756, 45461], "17": [121511, 90921]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "6884a0a312a96611bcc230b6519078c9"} \ No newline at end of file diff --git a/features/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.svs/features.npy b/features/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9fac1d7f0a6f3f7507d1d19c44a2ebad5b47aebc --- /dev/null +++ b/features/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bc43df32bc69785b75d50d53ec893597cb32c36fe4705244495d6c9e962b2af9 +size 202917864 diff --git a/features/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.svs/mask.npy b/features/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6dc0522c89c9fc05c41e98ad2c70b2b257cd7298 --- /dev/null +++ b/features/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eafac5c155dbad9f208091d2447b2c6159303f46cb354cc6c29a59d8bde6ffbb +size 107405452 diff --git a/features/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.svs/metadata.json b/features/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..936b5f7078d391173c581c3ed26ce18ad784e7b6 --- /dev/null +++ b/features/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24734, "total_number_of_tiles": 24734, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105575, 65095], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [7, 4], "4": [13, 8], "5": [26, 16], "6": [52, 32], "7": [104, 64], "8": [207, 128], "9": [413, 255], "10": [825, 509], "11": [1650, 1018], "12": [3300, 2035], "13": [6599, 4069], "14": [13197, 8137], "15": [26394, 16274], "16": [52788, 32548], "17": [105575, 65095]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4781a563979b86482ddb5612a68cfa3f"} \ No newline at end of file diff --git a/features/TCGA-DK-A3WX-01Z-00-DX1.02E25F1B-4726-4D9E-BBC0-CF42F548F559.svs/features.npy b/features/TCGA-DK-A3WX-01Z-00-DX1.02E25F1B-4726-4D9E-BBC0-CF42F548F559.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..363a33442e86dfdf9b151708bcd8d1b1cc12c08c --- /dev/null +++ b/features/TCGA-DK-A3WX-01Z-00-DX1.02E25F1B-4726-4D9E-BBC0-CF42F548F559.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4573648661dedce7d93654aae7a3ca9481840dd3a36dede7c6262de71d6b2690 +size 86478492 diff --git a/features/TCGA-DK-A3WX-01Z-00-DX1.02E25F1B-4726-4D9E-BBC0-CF42F548F559.svs/mask.npy b/features/TCGA-DK-A3WX-01Z-00-DX1.02E25F1B-4726-4D9E-BBC0-CF42F548F559.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d9285b81469482ccb03db758db2672c909adc3e3 --- /dev/null +++ b/features/TCGA-DK-A3WX-01Z-00-DX1.02E25F1B-4726-4D9E-BBC0-CF42F548F559.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5078c8444c873e9ba6cb37a49e7b19cc9b69f62c2e187f8e6302a4af5486f020 +size 121556452 diff --git a/features/TCGA-DK-A3WX-01Z-00-DX1.02E25F1B-4726-4D9E-BBC0-CF42F548F559.svs/metadata.json b/features/TCGA-DK-A3WX-01Z-00-DX1.02E25F1B-4726-4D9E-BBC0-CF42F548F559.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d50f0e4fc02b78410a42ea3462fbaf7d3accf530 --- /dev/null +++ b/features/TCGA-DK-A3WX-01Z-00-DX1.02E25F1B-4726-4D9E-BBC0-CF42F548F559.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10541, "total_number_of_tiles": 10541, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97607, 79691], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [24, 20], "6": [48, 39], "7": [96, 78], "8": [191, 156], "9": [382, 312], "10": [763, 623], "11": [1526, 1246], "12": [3051, 2491], "13": [6101, 4981], "14": [12201, 9962], "15": [24402, 19923], "16": [48804, 39846], "17": [97607, 79691]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c9b8d92a6e1b9b4c34e720c14745598c7c8e2580483bb4bad06567af5ca3eeb9"} \ No newline at end of file diff --git a/features/TCGA-DK-A3WY-01Z-00-DX1.B2B8F28A-A9A4-4C6E-8C7F-3008DF2DE498.svs/features.npy b/features/TCGA-DK-A3WY-01Z-00-DX1.B2B8F28A-A9A4-4C6E-8C7F-3008DF2DE498.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8531f804d88621cc3bf98b5ebd58945a00be9938 --- /dev/null +++ b/features/TCGA-DK-A3WY-01Z-00-DX1.B2B8F28A-A9A4-4C6E-8C7F-3008DF2DE498.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:926637cf57729b4e5cbbcad15f210edd224e89fc0f4b6f41fd55aab7ea2a6eed +size 232837852 diff --git a/features/TCGA-DK-A3WY-01Z-00-DX1.B2B8F28A-A9A4-4C6E-8C7F-3008DF2DE498.svs/mask.npy b/features/TCGA-DK-A3WY-01Z-00-DX1.B2B8F28A-A9A4-4C6E-8C7F-3008DF2DE498.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..489ebaa7e0b6bdda7fc845c7587fe3e9b6403ccd --- /dev/null +++ b/features/TCGA-DK-A3WY-01Z-00-DX1.B2B8F28A-A9A4-4C6E-8C7F-3008DF2DE498.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a5aa92fdd84e58cb05dd0fac57846c62612ebd021c70d7e025af06e8ac3ab92e +size 148412328 diff --git a/features/TCGA-DK-A3WY-01Z-00-DX1.B2B8F28A-A9A4-4C6E-8C7F-3008DF2DE498.svs/metadata.json b/features/TCGA-DK-A3WY-01Z-00-DX1.B2B8F28A-A9A4-4C6E-8C7F-3008DF2DE498.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fad4f61ebe7cd5d1cf39ce8b932ac986ce3fca21 --- /dev/null +++ b/features/TCGA-DK-A3WY-01Z-00-DX1.B2B8F28A-A9A4-4C6E-8C7F-3008DF2DE498.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 28381, "total_number_of_tiles": 28381, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101591, 93480], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [25, 23], "6": [50, 46], "7": [100, 92], "8": [199, 183], "9": [397, 366], "10": [794, 731], "11": [1588, 1461], "12": [3175, 2922], "13": [6350, 5843], "14": [12699, 11685], "15": [25398, 23370], "16": [50796, 46740], "17": [101591, 93480]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4e33408186a418715bd1f810d8f4ea11"} \ No newline at end of file diff --git a/features/TCGA-DK-A3X1-01Z-00-DX1.DE470E1B-1DB4-4985-B11D-ECB02A65CA6C.svs/features.npy b/features/TCGA-DK-A3X1-01Z-00-DX1.DE470E1B-1DB4-4985-B11D-ECB02A65CA6C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4027528a02ab6ffc101e76ef93690a45b510f2fa --- /dev/null +++ b/features/TCGA-DK-A3X1-01Z-00-DX1.DE470E1B-1DB4-4985-B11D-ECB02A65CA6C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f5faa2df45050e0276f1b0fda03ccc836f20774af4bc2a0917bc4b5407e61c17 +size 265538996 diff --git a/features/TCGA-DK-A3X1-01Z-00-DX1.DE470E1B-1DB4-4985-B11D-ECB02A65CA6C.svs/mask.npy b/features/TCGA-DK-A3X1-01Z-00-DX1.DE470E1B-1DB4-4985-B11D-ECB02A65CA6C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5e18b94ec35b5240d01e51ccf12f3de59843c494 --- /dev/null +++ b/features/TCGA-DK-A3X1-01Z-00-DX1.DE470E1B-1DB4-4985-B11D-ECB02A65CA6C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f0c21af2ee067b8ed8284af176dd018d079c9ec2a51761eb57c92d581ac94784 +size 166989400 diff --git a/features/TCGA-DK-A3X1-01Z-00-DX1.DE470E1B-1DB4-4985-B11D-ECB02A65CA6C.svs/metadata.json b/features/TCGA-DK-A3X1-01Z-00-DX1.DE470E1B-1DB4-4985-B11D-ECB02A65CA6C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..940d513c06a4dbd62ff0b55f80f77fb0001f9bf0 --- /dev/null +++ b/features/TCGA-DK-A3X1-01Z-00-DX1.DE470E1B-1DB4-4985-B11D-ECB02A65CA6C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32367, "total_number_of_tiles": 32367, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [117527, 90925], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 23], "6": [58, 45], "7": [115, 89], "8": [230, 178], "9": [460, 356], "10": [919, 711], "11": [1837, 1421], "12": [3673, 2842], "13": [7346, 5683], "14": [14691, 11366], "15": [29382, 22732], "16": [58764, 45463], "17": [117527, 90925]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "73b10f51860be1097f4a760f02704225"} \ No newline at end of file diff --git a/features/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.svs/features.npy b/features/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..db3367d3176cc3efacc7a60a761b3e2a05a8c137 --- /dev/null +++ b/features/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7e814d967431cf59edaa290949ca8456da0fd9eebe43613095cd4dd2038e2608 +size 159682784 diff --git a/features/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.svs/mask.npy b/features/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0558bba9e2bf6d2299c28a6e4e44e359a3a56934 --- /dev/null +++ b/features/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:59b749a04de423554deb7b8b392269f26bbf06bfb179a59415f1a9b4a38660d1 +size 147949708 diff --git a/features/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.svs/metadata.json b/features/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ac4707a1a7bfc067fd2e61033b17f2491d5d9584 --- /dev/null +++ b/features/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19464, "total_number_of_tiles": 19464, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105575, 89671], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 22], "6": [52, 44], "7": [104, 88], "8": [207, 176], "9": [413, 351], "10": [825, 701], "11": [1650, 1402], "12": [3300, 2803], "13": [6599, 5605], "14": [13197, 11209], "15": [26394, 22418], "16": [52788, 44836], "17": [105575, 89671]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c05b630cbae2de12e12983aaa7c526b8"} \ No newline at end of file diff --git a/features/TCGA-DK-A6AV-01Z-00-DX1.FC632EEE-668B-4757-B2FB-139D869812E0.svs/features.npy b/features/TCGA-DK-A6AV-01Z-00-DX1.FC632EEE-668B-4757-B2FB-139D869812E0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..dde2316c28c74064e5edf68d1c13fed54b45ed96 --- /dev/null +++ b/features/TCGA-DK-A6AV-01Z-00-DX1.FC632EEE-668B-4757-B2FB-139D869812E0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0a4519d06665a595d0bfe201d8a224575852423caddd0d6fa1abea69a994d8b8 +size 154407612 diff --git a/features/TCGA-DK-A6AV-01Z-00-DX1.FC632EEE-668B-4757-B2FB-139D869812E0.svs/mask.npy b/features/TCGA-DK-A6AV-01Z-00-DX1.FC632EEE-668B-4757-B2FB-139D869812E0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4a02ad768ed27ea2af716d7229894bb2bd4fc4de --- /dev/null +++ b/features/TCGA-DK-A6AV-01Z-00-DX1.FC632EEE-668B-4757-B2FB-139D869812E0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7ae8239ae6d11314cf024885e53ca3a98af2619b7a0f0bb0dd6df90aec1a45d5 +size 166026828 diff --git a/features/TCGA-DK-A6AV-01Z-00-DX1.FC632EEE-668B-4757-B2FB-139D869812E0.svs/metadata.json b/features/TCGA-DK-A6AV-01Z-00-DX1.FC632EEE-668B-4757-B2FB-139D869812E0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7d9ecf654259a4dce7d4ef063c43bdc05475a14d --- /dev/null +++ b/features/TCGA-DK-A6AV-01Z-00-DX1.FC632EEE-668B-4757-B2FB-139D869812E0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18821, "total_number_of_tiles": 18821, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 87431], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [30, 22], "6": [60, 43], "7": [119, 86], "8": [238, 171], "9": [475, 342], "10": [950, 684], "11": [1899, 1367], "12": [3798, 2733], "13": [7595, 5465], "14": [15189, 10929], "15": [30378, 21858], "16": [60756, 43716], "17": [121511, 87431]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1b91c43a04445525e4baba93e7831414"} \ No newline at end of file diff --git a/features/TCGA-DK-A6AW-01Z-00-DX1.C2453A8C-8282-443C-9E76-5B6CAD2FE69B.svs/features.npy b/features/TCGA-DK-A6AW-01Z-00-DX1.C2453A8C-8282-443C-9E76-5B6CAD2FE69B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e70f7903204d13ce5ee70031fcd56eff602ee0d0 --- /dev/null +++ b/features/TCGA-DK-A6AW-01Z-00-DX1.C2453A8C-8282-443C-9E76-5B6CAD2FE69B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:58604b2f90a33db21b83b7eec97425c9b730762be6528192f0a684448a3dc7a0 +size 120484072 diff --git a/features/TCGA-DK-A6AW-01Z-00-DX1.C2453A8C-8282-443C-9E76-5B6CAD2FE69B.svs/mask.npy b/features/TCGA-DK-A6AW-01Z-00-DX1.C2453A8C-8282-443C-9E76-5B6CAD2FE69B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..de466b17b0f3db70d4f1193780e9d07e2fab90f4 --- /dev/null +++ b/features/TCGA-DK-A6AW-01Z-00-DX1.C2453A8C-8282-443C-9E76-5B6CAD2FE69B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3f3e76cea23eb1d2adbc55c8147c2aec0a1adb447d6706dec71e9ff6179f2dbe +size 109409120 diff --git a/features/TCGA-DK-A6AW-01Z-00-DX1.C2453A8C-8282-443C-9E76-5B6CAD2FE69B.svs/metadata.json b/features/TCGA-DK-A6AW-01Z-00-DX1.C2453A8C-8282-443C-9E76-5B6CAD2FE69B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7188aa7d5ca95c3573041f6317d8523f43530547 --- /dev/null +++ b/features/TCGA-DK-A6AW-01Z-00-DX1.C2453A8C-8282-443C-9E76-5B6CAD2FE69B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14686, "total_number_of_tiles": 14686, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93623, 74780], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [23, 19], "6": [46, 37], "7": [92, 74], "8": [183, 147], "9": [366, 293], "10": [732, 585], "11": [1463, 1169], "12": [2926, 2337], "13": [5852, 4674], "14": [11703, 9348], "15": [23406, 18695], "16": [46812, 37390], "17": [93623, 74780]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a83aa2a8e9ca328d7ef6750d9bafd4bcb3bba68ae71918bf6694ce397fdd2731"} \ No newline at end of file diff --git a/features/TCGA-DK-A6B0-01Z-00-DX1.83628045-FDD9-4167-879F-7813FDCA7D97.svs/features.npy b/features/TCGA-DK-A6B0-01Z-00-DX1.83628045-FDD9-4167-879F-7813FDCA7D97.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..bcebb1c63dc5ab5d5499bbd573671e58d1cecaaa --- /dev/null +++ b/features/TCGA-DK-A6B0-01Z-00-DX1.83628045-FDD9-4167-879F-7813FDCA7D97.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:433c5070c716c7b6f129e4a6cd288a2b31b84943db027ca6943f7931913ff4ab +size 158649080 diff --git a/features/TCGA-DK-A6B0-01Z-00-DX1.83628045-FDD9-4167-879F-7813FDCA7D97.svs/mask.npy b/features/TCGA-DK-A6B0-01Z-00-DX1.83628045-FDD9-4167-879F-7813FDCA7D97.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8c818f2eff020d20bdce1077cc7fdce293926517 --- /dev/null +++ b/features/TCGA-DK-A6B0-01Z-00-DX1.83628045-FDD9-4167-879F-7813FDCA7D97.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a8b5a92810d00f6b8dce17112b0b5377754263742923db4cff7196c07ffbcd99 +size 135588752 diff --git a/features/TCGA-DK-A6B0-01Z-00-DX1.83628045-FDD9-4167-879F-7813FDCA7D97.svs/metadata.json b/features/TCGA-DK-A6B0-01Z-00-DX1.83628045-FDD9-4167-879F-7813FDCA7D97.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3713b6fcde6cf516f9fb9fc14bb9a4ec3f940e2c --- /dev/null +++ b/features/TCGA-DK-A6B0-01Z-00-DX1.83628045-FDD9-4167-879F-7813FDCA7D97.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19338, "total_number_of_tiles": 19338, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97607, 88888], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [24, 22], "6": [48, 44], "7": [96, 87], "8": [191, 174], "9": [382, 348], "10": [763, 695], "11": [1526, 1389], "12": [3051, 2778], "13": [6101, 5556], "14": [12201, 11111], "15": [24402, 22222], "16": [48804, 44444], "17": [97607, 88888]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "405037988911036da021c605e3668274"} \ No newline at end of file diff --git a/features/TCGA-DK-A6B1-01Z-00-DX1.16F4E625-D690-45CD-B810-9E7F12EF9A90.svs/features.npy b/features/TCGA-DK-A6B1-01Z-00-DX1.16F4E625-D690-45CD-B810-9E7F12EF9A90.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c6ebf371cb69bf412d279b44befe76a3d2151b41 --- /dev/null +++ b/features/TCGA-DK-A6B1-01Z-00-DX1.16F4E625-D690-45CD-B810-9E7F12EF9A90.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9cd8f7eed10d8caa575f616354a7b17ee7e0ee2350129b7d3adec82feb422b7d +size 204903232 diff --git a/features/TCGA-DK-A6B1-01Z-00-DX1.16F4E625-D690-45CD-B810-9E7F12EF9A90.svs/mask.npy b/features/TCGA-DK-A6B1-01Z-00-DX1.16F4E625-D690-45CD-B810-9E7F12EF9A90.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6f877ce49cab439e48a007ed86820cda335b0588 --- /dev/null +++ b/features/TCGA-DK-A6B1-01Z-00-DX1.16F4E625-D690-45CD-B810-9E7F12EF9A90.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:de0aeeabe99e6d3b82d19c36c962b41d1ca33e4797a1d1d84befbf2f135e31e5 +size 165356304 diff --git a/features/TCGA-DK-A6B1-01Z-00-DX1.16F4E625-D690-45CD-B810-9E7F12EF9A90.svs/metadata.json b/features/TCGA-DK-A6B1-01Z-00-DX1.16F4E625-D690-45CD-B810-9E7F12EF9A90.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..72885970b117bd3a6f014cf34184b3ba19118a91 --- /dev/null +++ b/features/TCGA-DK-A6B1-01Z-00-DX1.16F4E625-D690-45CD-B810-9E7F12EF9A90.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24976, "total_number_of_tiles": 24976, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129479, 81714], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [32, 20], "6": [64, 40], "7": [127, 80], "8": [253, 160], "9": [506, 320], "10": [1012, 639], "11": [2024, 1277], "12": [4047, 2554], "13": [8093, 5108], "14": [16185, 10215], "15": [32370, 20429], "16": [64740, 40857], "17": [129479, 81714]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "13563536a66404e33b2674b711934580"} \ No newline at end of file diff --git a/features/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.svs/features.npy b/features/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6568c1537a523f91aa79b31c86d05f7b48f483c5 --- /dev/null +++ b/features/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1654f488884d4a51c17d9ed413b0bc2e335891548f0d0b1533a4f0b8f1591353 +size 191776832 diff --git a/features/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.svs/mask.npy b/features/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..25b05da4ab997db4718a37a8fda49347b34638dc --- /dev/null +++ b/features/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a0b7979fd4624f98eb1f3d51aaf4ccd50f7014927662097e456d59bdb9719871 +size 213662048 diff --git a/features/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.svs/metadata.json b/features/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5eba9a51b766b801c4f4f54c615b0f82a0016ea6 --- /dev/null +++ b/features/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23376, "total_number_of_tiles": 23376, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [159359, 85802], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [20, 11], "6": [39, 21], "7": [78, 42], "8": [156, 84], "9": [312, 168], "10": [623, 336], "11": [1245, 671], "12": [2490, 1341], "13": [4980, 2682], "14": [9960, 5363], "15": [19920, 10726], "16": [39840, 21451], "17": [79680, 42901], "18": [159359, 85802]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "38d07efce007d8c828be4c18b781d8ead90f2f26496d181c511689bc6504d082"} \ No newline at end of file diff --git a/features/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.svs/features.npy b/features/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0cbefd91bfbd38b2d318eceeef9dcab2813f246a --- /dev/null +++ b/features/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c04f1be5e551b4e223743c6c94f19882d7185e0625f9cb748d1041a02f567cb8 +size 173875704 diff --git a/features/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.svs/mask.npy b/features/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..279e060a3af8c3681b38b7b5ca72d286275d6eb8 --- /dev/null +++ b/features/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:950e4752ce1db417cde5270ad65e754c18de03a429519b7dd5d92be9825a5231 +size 152316416 diff --git a/features/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.svs/metadata.json b/features/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fe6917153522901772968c3a0270605603a27837 --- /dev/null +++ b/features/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21194, "total_number_of_tiles": 21194, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107567, 90620], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [53, 45], "7": [106, 89], "8": [211, 177], "9": [421, 354], "10": [841, 708], "11": [1681, 1416], "12": [3362, 2832], "13": [6723, 5664], "14": [13446, 11328], "15": [26892, 22655], "16": [53784, 45310], "17": [107567, 90620]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "df0fdde7919d816a07793446729e1339"} \ No newline at end of file diff --git a/features/TCGA-DK-A6B6-01Z-00-DX1.CD8B2F09-A5BA-4795-92FD-03A7315C3A2D.svs/features.npy b/features/TCGA-DK-A6B6-01Z-00-DX1.CD8B2F09-A5BA-4795-92FD-03A7315C3A2D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ae42c282d53dfb899c8a97814a270708899b228f --- /dev/null +++ b/features/TCGA-DK-A6B6-01Z-00-DX1.CD8B2F09-A5BA-4795-92FD-03A7315C3A2D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f5c068b25df81f5682f9f763cb2c494a78e03571eb0e0e7c800c11bc8ba4c776 +size 136662360 diff --git a/features/TCGA-DK-A6B6-01Z-00-DX1.CD8B2F09-A5BA-4795-92FD-03A7315C3A2D.svs/mask.npy b/features/TCGA-DK-A6B6-01Z-00-DX1.CD8B2F09-A5BA-4795-92FD-03A7315C3A2D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b0200e642ff97a4232b6decc72167c0341af652b --- /dev/null +++ b/features/TCGA-DK-A6B6-01Z-00-DX1.CD8B2F09-A5BA-4795-92FD-03A7315C3A2D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:23b4868ed338bddbd459f148792873f37284295018e67b03552cbeabf04fce61 +size 153967996 diff --git a/features/TCGA-DK-A6B6-01Z-00-DX1.CD8B2F09-A5BA-4795-92FD-03A7315C3A2D.svs/metadata.json b/features/TCGA-DK-A6B6-01Z-00-DX1.CD8B2F09-A5BA-4795-92FD-03A7315C3A2D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c65bbcfc153a3b8c4905dbba592aed9fce6cc952 --- /dev/null +++ b/features/TCGA-DK-A6B6-01Z-00-DX1.CD8B2F09-A5BA-4795-92FD-03A7315C3A2D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16658, "total_number_of_tiles": 16658, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105575, 93316], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [26, 23], "6": [52, 46], "7": [104, 92], "8": [207, 183], "9": [413, 365], "10": [825, 730], "11": [1650, 1459], "12": [3300, 2917], "13": [6599, 5833], "14": [13197, 11665], "15": [26394, 23329], "16": [52788, 46658], "17": [105575, 93316]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "749519a956a1bfe559ab89b2f77747cc"} \ No newline at end of file diff --git a/features/TCGA-E5-A2PC-01Z-00-DX1.409697C6-097B-4B24-A54B-B52BEC5A0A9B.svs/features.npy b/features/TCGA-E5-A2PC-01Z-00-DX1.409697C6-097B-4B24-A54B-B52BEC5A0A9B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..737aa82067017e935ee40bfa518cf2a01e28f7f4 --- /dev/null +++ b/features/TCGA-E5-A2PC-01Z-00-DX1.409697C6-097B-4B24-A54B-B52BEC5A0A9B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f77f75b4e3a2b078bce39692e942e27e4180adccfa89beeced08ae9873a2efe1 +size 96963204 diff --git a/features/TCGA-E5-A2PC-01Z-00-DX1.409697C6-097B-4B24-A54B-B52BEC5A0A9B.svs/mask.npy b/features/TCGA-E5-A2PC-01Z-00-DX1.409697C6-097B-4B24-A54B-B52BEC5A0A9B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..144509810bdb2b00db8f206761ef0716bd3ca994 --- /dev/null +++ b/features/TCGA-E5-A2PC-01Z-00-DX1.409697C6-097B-4B24-A54B-B52BEC5A0A9B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a5491c52a32a23f34906f15edf6214b3514bd9f49ff3fd0697de03d17e7f7bac +size 132188236 diff --git a/features/TCGA-E5-A2PC-01Z-00-DX1.409697C6-097B-4B24-A54B-B52BEC5A0A9B.svs/metadata.json b/features/TCGA-E5-A2PC-01Z-00-DX1.409697C6-097B-4B24-A54B-B52BEC5A0A9B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b61ab604a00b2a8f24088458bfe823d53998ed67 --- /dev/null +++ b/features/TCGA-E5-A2PC-01Z-00-DX1.409697C6-097B-4B24-A54B-B52BEC5A0A9B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11819, "total_number_of_tiles": 11819, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113288, 74661], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [28, 19], "6": [56, 37], "7": [111, 73], "8": [222, 146], "9": [443, 292], "10": [886, 584], "11": [1771, 1167], "12": [3541, 2334], "13": [7081, 4667], "14": [14161, 9333], "15": [28322, 18666], "16": [56644, 37331], "17": [113288, 74661]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0a076bf348d6eab530aadf6235e7aecc"} \ No newline at end of file diff --git a/features/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.svs/features.npy b/features/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9e54fa84f2f4438995c22848ffd4c6be86d2ee93 --- /dev/null +++ b/features/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9dfd15b5a0335054bb6b04d1f2ccaf2e441491b3a63ed030922923f243e26d15 +size 191711200 diff --git a/features/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.svs/mask.npy b/features/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..938c72c259a5930b461aece6480ccd314ecb141f --- /dev/null +++ b/features/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7485d1518e148fa1bb68fdb2ed2bec594e7a780c90841478611e01a3f949481f +size 214668512 diff --git a/features/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.svs/metadata.json b/features/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d9c76468239da65db679cd7933b375a2fe8c7d00 --- /dev/null +++ b/features/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23368, "total_number_of_tiles": 23368, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [144704, 94944], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [36, 24], "7": [71, 47], "8": [142, 93], "9": [283, 186], "10": [566, 371], "11": [1131, 742], "12": [2261, 1484], "13": [4522, 2967], "14": [9044, 5934], "15": [18088, 11868], "16": [36176, 23736], "17": [72352, 47472], "18": [144704, 94944]}, "level_mpp_mapping": {"0": 64697.1392, "1": 32348.5696, "2": 16174.2848, "3": 8087.1424, "4": 4043.5712, "5": 2021.7856, "6": 1010.8928, "7": 505.4464, "8": 252.7232, "9": 126.3616, "10": 63.1808, "11": 31.5904, "12": 15.7952, "13": 7.8976, "14": 3.9488, "15": 1.9744, "16": 0.9872, "17": 0.4936, "18": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "736886be769c32bd6f913a526cbf70bcb16b9f0d4f1bebbcffca0999e26acd6e"} \ No newline at end of file diff --git a/features/TCGA-E5-A4U1-01Z-00-DX1.A088BCB3-86D7-4895-A168-00981B44EF78.svs/features.npy b/features/TCGA-E5-A4U1-01Z-00-DX1.A088BCB3-86D7-4895-A168-00981B44EF78.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..54a8599a97ac972780d279ff9c36a85e947510ab --- /dev/null +++ b/features/TCGA-E5-A4U1-01Z-00-DX1.A088BCB3-86D7-4895-A168-00981B44EF78.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:440957c0661252ea04de92ab2eeb4f4b38946608aa6e9be513ec137582361cc0 +size 128261464 diff --git a/features/TCGA-E5-A4U1-01Z-00-DX1.A088BCB3-86D7-4895-A168-00981B44EF78.svs/mask.npy b/features/TCGA-E5-A4U1-01Z-00-DX1.A088BCB3-86D7-4895-A168-00981B44EF78.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c1acef3d7206c95d45b3dbb5ea93f62732b87814 --- /dev/null +++ b/features/TCGA-E5-A4U1-01Z-00-DX1.A088BCB3-86D7-4895-A168-00981B44EF78.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:537a7b98f3448b8baa4cb4ad3451f9819368e88e37e5d9a647026d8df4620f39 +size 172503004 diff --git a/features/TCGA-E5-A4U1-01Z-00-DX1.A088BCB3-86D7-4895-A168-00981B44EF78.svs/metadata.json b/features/TCGA-E5-A4U1-01Z-00-DX1.A088BCB3-86D7-4895-A168-00981B44EF78.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f6c23bc17876870d09169708837f19327ceb8116 --- /dev/null +++ b/features/TCGA-E5-A4U1-01Z-00-DX1.A088BCB3-86D7-4895-A168-00981B44EF78.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15634, "total_number_of_tiles": 15634, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [116144, 95048], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 24], "6": [57, 47], "7": [114, 93], "8": [227, 186], "9": [454, 372], "10": [908, 743], "11": [1815, 1486], "12": [3630, 2971], "13": [7259, 5941], "14": [14518, 11881], "15": [29036, 23762], "16": [58072, 47524], "17": [116144, 95048]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bd1e2a4f12685574e148633896911eb7"} \ No newline at end of file diff --git a/features/TCGA-E7-A3X6-01Z-00-DX1.5566A0E9-E1C3-4F97-8C82-D2FF3FE3FD8D.svs/features.npy b/features/TCGA-E7-A3X6-01Z-00-DX1.5566A0E9-E1C3-4F97-8C82-D2FF3FE3FD8D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8d052e8f2b3b79439e61771a5fe96492bafc648a --- /dev/null +++ b/features/TCGA-E7-A3X6-01Z-00-DX1.5566A0E9-E1C3-4F97-8C82-D2FF3FE3FD8D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:582eb7a9e069ea2a684a556f58cfe73daf5c8eb67bdb7df8a8ebd89a78b2869e +size 70718608 diff --git a/features/TCGA-E7-A3X6-01Z-00-DX1.5566A0E9-E1C3-4F97-8C82-D2FF3FE3FD8D.svs/mask.npy b/features/TCGA-E7-A3X6-01Z-00-DX1.5566A0E9-E1C3-4F97-8C82-D2FF3FE3FD8D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..bfa736a1842a59bd4497a5223fc6cce8cd2c87de --- /dev/null +++ b/features/TCGA-E7-A3X6-01Z-00-DX1.5566A0E9-E1C3-4F97-8C82-D2FF3FE3FD8D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6146e3e202fe73b8139d104455fa014710d5b54a9584a340fde04b85978e239b +size 69320960 diff --git a/features/TCGA-E7-A3X6-01Z-00-DX1.5566A0E9-E1C3-4F97-8C82-D2FF3FE3FD8D.svs/metadata.json b/features/TCGA-E7-A3X6-01Z-00-DX1.5566A0E9-E1C3-4F97-8C82-D2FF3FE3FD8D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..02e851ea04273e8eb048206c40e88751351a01f9 --- /dev/null +++ b/features/TCGA-E7-A3X6-01Z-00-DX1.5566A0E9-E1C3-4F97-8C82-D2FF3FE3FD8D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 8620, "total_number_of_tiles": 8620, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [70448, 62975], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [9, 8], "5": [18, 16], "6": [35, 31], "7": [69, 62], "8": [138, 123], "9": [276, 246], "10": [551, 492], "11": [1101, 984], "12": [2202, 1968], "13": [4403, 3936], "14": [8806, 7872], "15": [17612, 15744], "16": [35224, 31488], "17": [70448, 62975]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "484048f3483515b4633a225888765973a0d7d2366465d5229cc5c54900789461"} \ No newline at end of file diff --git a/features/TCGA-E7-A3Y1-01Z-00-DX1.D3E81A0B-1D20-4916-8872-81D469A1E276.svs/features.npy b/features/TCGA-E7-A3Y1-01Z-00-DX1.D3E81A0B-1D20-4916-8872-81D469A1E276.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..73e9e322cae355d826342c3566b5c1458824996f --- /dev/null +++ b/features/TCGA-E7-A3Y1-01Z-00-DX1.D3E81A0B-1D20-4916-8872-81D469A1E276.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:687ea431aad8f0c1b4eebe14bfadaa6b5dc49437314b5956ad2bba5b0b9247c4 +size 98554780 diff --git a/features/TCGA-E7-A3Y1-01Z-00-DX1.D3E81A0B-1D20-4916-8872-81D469A1E276.svs/mask.npy b/features/TCGA-E7-A3Y1-01Z-00-DX1.D3E81A0B-1D20-4916-8872-81D469A1E276.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b749a2fe8632af8fc0ad93e7b0fa0d90cbc0c1fc --- /dev/null +++ b/features/TCGA-E7-A3Y1-01Z-00-DX1.D3E81A0B-1D20-4916-8872-81D469A1E276.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bf5c63b1c3b2b382eb72bc7340992ffbabad03232e21260d768bbffb54a947be +size 117676928 diff --git a/features/TCGA-E7-A3Y1-01Z-00-DX1.D3E81A0B-1D20-4916-8872-81D469A1E276.svs/metadata.json b/features/TCGA-E7-A3Y1-01Z-00-DX1.D3E81A0B-1D20-4916-8872-81D469A1E276.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ec58e51ef440b2a6c45a5ceeda69e7eac9349b81 --- /dev/null +++ b/features/TCGA-E7-A3Y1-01Z-00-DX1.D3E81A0B-1D20-4916-8872-81D469A1E276.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12013, "total_number_of_tiles": 12013, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [98056, 76793], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [24, 19], "6": [48, 38], "7": [96, 75], "8": [192, 150], "9": [384, 300], "10": [767, 600], "11": [1533, 1200], "12": [3065, 2400], "13": [6129, 4800], "14": [12257, 9600], "15": [24514, 19199], "16": [49028, 38397], "17": [98056, 76793]}, "level_mpp_mapping": {"0": 32309.248, "1": 16154.624, "2": 8077.312, "3": 4038.656, "4": 2019.328, "5": 1009.664, "6": 504.832, "7": 252.416, "8": 126.208, "9": 63.104, "10": 31.552, "11": 15.776, "12": 7.888, "13": 3.944, "14": 1.972, "15": 0.986, "16": 0.493, "17": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2d1af5a74850abcf15287a30355ae887ff04a5940898dd22b7a3f0232ca8c72a"} \ No newline at end of file diff --git a/features/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.svs/features.npy b/features/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a2553c40ccc960121f1dde04fd3f9719e6e799a3 --- /dev/null +++ b/features/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e89e445e8ba32555302eac262f7a618aa1535e52c6bd1e235c6a6a26170602d1 +size 164441104 diff --git a/features/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.svs/mask.npy b/features/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..072a78656f4cd8ad9926b4e4bef16031248362c9 --- /dev/null +++ b/features/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:694ab293412b215972834e8cf7e1d0eb28a9c0eee50d963358d4ce2e675a20dc +size 141150788 diff --git a/features/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.svs/metadata.json b/features/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..94980c3f8ab22a4a5be9d54a4a8490ec3fc04fe7 --- /dev/null +++ b/features/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20044, "total_number_of_tiles": 20044, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [100912, 89512], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [25, 22], "6": [50, 44], "7": [99, 88], "8": [198, 175], "9": [395, 350], "10": [789, 700], "11": [1577, 1399], "12": [3154, 2798], "13": [6307, 5595], "14": [12614, 11189], "15": [25228, 22378], "16": [50456, 44756], "17": [100912, 89512]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d7636c121a64aff52724afcc11ad4d29"} \ No newline at end of file diff --git a/features/TCGA-E7-A4XJ-01Z-00-DX1.70DA8872-34A6-41B7-8D17-2B15C80EF5CF.svs/features.npy b/features/TCGA-E7-A4XJ-01Z-00-DX1.70DA8872-34A6-41B7-8D17-2B15C80EF5CF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1b99f22301426d4c1f265f4d89e1f75dd1de7541 --- /dev/null +++ b/features/TCGA-E7-A4XJ-01Z-00-DX1.70DA8872-34A6-41B7-8D17-2B15C80EF5CF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9994e2481fd86f96f9a79ed1ebbabd8c9c9b77fe159d5b36e6a42042e6601431 +size 121813120 diff --git a/features/TCGA-E7-A4XJ-01Z-00-DX1.70DA8872-34A6-41B7-8D17-2B15C80EF5CF.svs/mask.npy b/features/TCGA-E7-A4XJ-01Z-00-DX1.70DA8872-34A6-41B7-8D17-2B15C80EF5CF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..09e793747ed2e918910f0172961bd70b4af800ec --- /dev/null +++ b/features/TCGA-E7-A4XJ-01Z-00-DX1.70DA8872-34A6-41B7-8D17-2B15C80EF5CF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e154fbe603adee3e19c03514b7ab607107c83cc5baa6f55eb0f22823396e77e8 +size 99540296 diff --git a/features/TCGA-E7-A4XJ-01Z-00-DX1.70DA8872-34A6-41B7-8D17-2B15C80EF5CF.svs/metadata.json b/features/TCGA-E7-A4XJ-01Z-00-DX1.70DA8872-34A6-41B7-8D17-2B15C80EF5CF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..62227050cfda9b616ade47964b144ca1d90ea84f --- /dev/null +++ b/features/TCGA-E7-A4XJ-01Z-00-DX1.70DA8872-34A6-41B7-8D17-2B15C80EF5CF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14848, "total_number_of_tiles": 14848, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [79968, 79653], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [10, 10], "5": [20, 20], "6": [40, 39], "7": [79, 78], "8": [157, 156], "9": [313, 312], "10": [625, 623], "11": [1250, 1245], "12": [2499, 2490], "13": [4998, 4979], "14": [9996, 9957], "15": [19992, 19914], "16": [39984, 39827], "17": [79968, 79653]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9cac6f255b058b4518f1cf6462ccb3aa960ac0996f87b186dc2f2dcb31ed43c4"} \ No newline at end of file diff --git a/features/TCGA-E7-A519-01Z-00-DX1.F197805D-A2DB-4207-91EC-A9AE1FE16C53.svs/features.npy b/features/TCGA-E7-A519-01Z-00-DX1.F197805D-A2DB-4207-91EC-A9AE1FE16C53.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6a5904c24c0fa8dde8113c661c7e04c4cf76ba2b --- /dev/null +++ b/features/TCGA-E7-A519-01Z-00-DX1.F197805D-A2DB-4207-91EC-A9AE1FE16C53.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:41298804726fa5da459cb896e252f21775431fc5b966bb5ca2c168e144c4b96c +size 82048332 diff --git a/features/TCGA-E7-A519-01Z-00-DX1.F197805D-A2DB-4207-91EC-A9AE1FE16C53.svs/mask.npy b/features/TCGA-E7-A519-01Z-00-DX1.F197805D-A2DB-4207-91EC-A9AE1FE16C53.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4418ac94a74927ee326a91fddb4b91cf98e45026 --- /dev/null +++ b/features/TCGA-E7-A519-01Z-00-DX1.F197805D-A2DB-4207-91EC-A9AE1FE16C53.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f086c61863c9c68733d5aa3d2280f3c08109d0556080a694087863307ee6a536 +size 109843612 diff --git a/features/TCGA-E7-A519-01Z-00-DX1.F197805D-A2DB-4207-91EC-A9AE1FE16C53.svs/metadata.json b/features/TCGA-E7-A519-01Z-00-DX1.F197805D-A2DB-4207-91EC-A9AE1FE16C53.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..502e3117045a09032b573cc793fb9b06a86b6d6e --- /dev/null +++ b/features/TCGA-E7-A519-01Z-00-DX1.F197805D-A2DB-4207-91EC-A9AE1FE16C53.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10001, "total_number_of_tiles": 10001, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101864, 68994], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 9], "5": [25, 17], "6": [50, 34], "7": [100, 68], "8": [199, 135], "9": [398, 270], "10": [796, 540], "11": [1592, 1079], "12": [3184, 2157], "13": [6367, 4313], "14": [12733, 8625], "15": [25466, 17249], "16": [50932, 34497], "17": [101864, 68994]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "888bbe69e66dde0d0f707efec31c7cefdd273b74ef987651c3485aee1d33caa5"} \ No newline at end of file diff --git a/features/TCGA-E7-A541-01Z-00-DX1.8387CEF8-706B-486C-BC07-783EC1016BCC.svs/features.npy b/features/TCGA-E7-A541-01Z-00-DX1.8387CEF8-706B-486C-BC07-783EC1016BCC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..215390c8d93889726cc436eb15b02dab24022588 --- /dev/null +++ b/features/TCGA-E7-A541-01Z-00-DX1.8387CEF8-706B-486C-BC07-783EC1016BCC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7007c886410fefcdcc940473169d775a487b797a0ee2715011f4cf5afd0818c6 +size 191481488 diff --git a/features/TCGA-E7-A541-01Z-00-DX1.8387CEF8-706B-486C-BC07-783EC1016BCC.svs/mask.npy b/features/TCGA-E7-A541-01Z-00-DX1.8387CEF8-706B-486C-BC07-783EC1016BCC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0396aa0d55ad749afb8c7cac8ab0b234659ee279 --- /dev/null +++ b/features/TCGA-E7-A541-01Z-00-DX1.8387CEF8-706B-486C-BC07-783EC1016BCC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:67b203fbb252ea57ff5735bc9019aa822f1c244734ea6d304dc74c9d79721655 +size 144500400 diff --git a/features/TCGA-E7-A541-01Z-00-DX1.8387CEF8-706B-486C-BC07-783EC1016BCC.svs/metadata.json b/features/TCGA-E7-A541-01Z-00-DX1.8387CEF8-706B-486C-BC07-783EC1016BCC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1304c924ef1e568f939441f6f06b5521f4ad60f2 --- /dev/null +++ b/features/TCGA-E7-A541-01Z-00-DX1.8387CEF8-706B-486C-BC07-783EC1016BCC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23340, "total_number_of_tiles": 23340, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [110432, 83729], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 21], "6": [54, 41], "7": [108, 82], "8": [216, 164], "9": [432, 328], "10": [863, 655], "11": [1726, 1309], "12": [3451, 2617], "13": [6902, 5234], "14": [13804, 10467], "15": [27608, 20933], "16": [55216, 41865], "17": [110432, 83729]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f5441d4e9699cc95947469acab9afd5a"} \ No newline at end of file diff --git a/features/TCGA-E7-A5KE-01Z-00-DX1.BDCD4071-5EE5-4863-A722-DAA32F3A7FB4.svs/features.npy b/features/TCGA-E7-A5KE-01Z-00-DX1.BDCD4071-5EE5-4863-A722-DAA32F3A7FB4.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e82b60873e4ddcc2e728fd6720bca5e2a4a333f6 --- /dev/null +++ b/features/TCGA-E7-A5KE-01Z-00-DX1.BDCD4071-5EE5-4863-A722-DAA32F3A7FB4.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f88528c871dba0d21d210350e4be691e4f94a0ddbdc991918c1bf3e801288afa +size 43333656 diff --git a/features/TCGA-E7-A5KE-01Z-00-DX1.BDCD4071-5EE5-4863-A722-DAA32F3A7FB4.svs/mask.npy b/features/TCGA-E7-A5KE-01Z-00-DX1.BDCD4071-5EE5-4863-A722-DAA32F3A7FB4.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..afe8347739fe26dc5754111f51953456c913f744 --- /dev/null +++ b/features/TCGA-E7-A5KE-01Z-00-DX1.BDCD4071-5EE5-4863-A722-DAA32F3A7FB4.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8730c0ffb985aa996fbbef42d65b4659d167634e0b133d7d215616dd220d313e +size 55804464 diff --git a/features/TCGA-E7-A5KE-01Z-00-DX1.BDCD4071-5EE5-4863-A722-DAA32F3A7FB4.svs/metadata.json b/features/TCGA-E7-A5KE-01Z-00-DX1.BDCD4071-5EE5-4863-A722-DAA32F3A7FB4.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fa928dac6693110132806ac5b9b24c1ef01ed367 --- /dev/null +++ b/features/TCGA-E7-A5KE-01Z-00-DX1.BDCD4071-5EE5-4863-A722-DAA32F3A7FB4.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 5282, "total_number_of_tiles": 5282, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [53312, 66985], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [1, 2], "2": [2, 3], "3": [4, 5], "4": [7, 9], "5": [14, 17], "6": [27, 33], "7": [53, 66], "8": [105, 131], "9": [209, 262], "10": [417, 524], "11": [833, 1047], "12": [1666, 2094], "13": [3332, 4187], "14": [6664, 8374], "15": [13328, 16747], "16": [26656, 33493], "17": [53312, 66985]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "168589fe362993664ef3c709a9710c1d7f5e3eadb8ff5d88115dc65756e35e13"} \ No newline at end of file diff --git a/features/TCGA-E7-A5KF-01Z-00-DX1.61663245-91CA-423F-9639-30B9F7E216C4.svs/features.npy b/features/TCGA-E7-A5KF-01Z-00-DX1.61663245-91CA-423F-9639-30B9F7E216C4.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9cdc10014ed869a60a682f5581a120db76f59ea1 --- /dev/null +++ b/features/TCGA-E7-A5KF-01Z-00-DX1.61663245-91CA-423F-9639-30B9F7E216C4.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bbbc2e6374d41e87a3e212b16b9f4b370fb3e48b153fc4ec1ce5482911cb7a9f +size 101434384 diff --git a/features/TCGA-E7-A5KF-01Z-00-DX1.61663245-91CA-423F-9639-30B9F7E216C4.svs/mask.npy b/features/TCGA-E7-A5KF-01Z-00-DX1.61663245-91CA-423F-9639-30B9F7E216C4.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..570f2ce4b666a671399993480d46859f9ef0f62c --- /dev/null +++ b/features/TCGA-E7-A5KF-01Z-00-DX1.61663245-91CA-423F-9639-30B9F7E216C4.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:04653f1473216cc56a2a9ae9bfe68e4d3a3a7e43ec1a2702a66adfb7db79aee4 +size 113238608 diff --git a/features/TCGA-E7-A5KF-01Z-00-DX1.61663245-91CA-423F-9639-30B9F7E216C4.svs/metadata.json b/features/TCGA-E7-A5KF-01Z-00-DX1.61663245-91CA-423F-9639-30B9F7E216C4.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e386e91e703fc87febbe123044fff66a6b3fff69 --- /dev/null +++ b/features/TCGA-E7-A5KF-01Z-00-DX1.61663245-91CA-423F-9639-30B9F7E216C4.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12364, "total_number_of_tiles": 12364, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [86632, 83641], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 11], "5": [22, 21], "6": [43, 41], "7": [85, 82], "8": [170, 164], "9": [339, 327], "10": [677, 654], "11": [1354, 1307], "12": [2708, 2614], "13": [5415, 5228], "14": [10829, 10456], "15": [21658, 20911], "16": [43316, 41821], "17": [86632, 83641]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "6b5b208945b10e734ecf04e62efea405663287da73b05af826dcba25c7cda483"} \ No newline at end of file diff --git a/features/TCGA-E7-A677-01Z-00-DX1.D66285D0-F67B-4423-929B-DF34BBC55C80.svs/features.npy b/features/TCGA-E7-A677-01Z-00-DX1.D66285D0-F67B-4423-929B-DF34BBC55C80.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..546a411589e43678faa96c3522ea633e6eafa296 --- /dev/null +++ b/features/TCGA-E7-A677-01Z-00-DX1.D66285D0-F67B-4423-929B-DF34BBC55C80.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:373671b01eb468ef47685c083d7560f2999d29b56e62785ae30d98a63a40bf8d +size 79554316 diff --git a/features/TCGA-E7-A677-01Z-00-DX1.D66285D0-F67B-4423-929B-DF34BBC55C80.svs/mask.npy b/features/TCGA-E7-A677-01Z-00-DX1.D66285D0-F67B-4423-929B-DF34BBC55C80.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ab52a86827027586fca707447e678d5d7b96fa3f --- /dev/null +++ b/features/TCGA-E7-A677-01Z-00-DX1.D66285D0-F67B-4423-929B-DF34BBC55C80.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:21d5e92ac7da922f1c8394cd185780413dd66817be46fa54cc7c3f372cb3fcca +size 68272808 diff --git a/features/TCGA-E7-A677-01Z-00-DX1.D66285D0-F67B-4423-929B-DF34BBC55C80.svs/metadata.json b/features/TCGA-E7-A677-01Z-00-DX1.D66285D0-F67B-4423-929B-DF34BBC55C80.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1086d9cede519e831ec417708e1cf5c7c853071c --- /dev/null +++ b/features/TCGA-E7-A677-01Z-00-DX1.D66285D0-F67B-4423-929B-DF34BBC55C80.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 9697, "total_number_of_tiles": 9697, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [66640, 65562], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [9, 9], "5": [17, 17], "6": [33, 33], "7": [66, 65], "8": [131, 129], "9": [261, 257], "10": [521, 513], "11": [1042, 1025], "12": [2083, 2049], "13": [4165, 4098], "14": [8330, 8196], "15": [16660, 16391], "16": [33320, 32781], "17": [66640, 65562]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "440010f2f649f4339309e49c134133ebd2e2ba1b3b17d9b5603e9bfb5c2ece1a"} \ No newline at end of file diff --git a/features/TCGA-E7-A678-01Z-00-DX1.C589E72B-7214-4EE9-A796-869C2372DD67.svs/features.npy b/features/TCGA-E7-A678-01Z-00-DX1.C589E72B-7214-4EE9-A796-869C2372DD67.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5fbe89ad7f674b43c6a8146dc01f239cdde01282 --- /dev/null +++ b/features/TCGA-E7-A678-01Z-00-DX1.C589E72B-7214-4EE9-A796-869C2372DD67.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:657314ff395972b117e8cdb40afd94d9dda206ed568a8e4c0f3aaacb31c2b0ae +size 188068624 diff --git a/features/TCGA-E7-A678-01Z-00-DX1.C589E72B-7214-4EE9-A796-869C2372DD67.svs/mask.npy b/features/TCGA-E7-A678-01Z-00-DX1.C589E72B-7214-4EE9-A796-869C2372DD67.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5ae31c81cfc5eaa6ce5866bcdb3bc22f5d8b6ad6 --- /dev/null +++ b/features/TCGA-E7-A678-01Z-00-DX1.C589E72B-7214-4EE9-A796-869C2372DD67.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0a3b7c43d6a39eaffcc5722793299fb0443a96d5cb88316c3e998f55cb74595e +size 141372128 diff --git a/features/TCGA-E7-A678-01Z-00-DX1.C589E72B-7214-4EE9-A796-869C2372DD67.svs/metadata.json b/features/TCGA-E7-A678-01Z-00-DX1.C589E72B-7214-4EE9-A796-869C2372DD67.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..38fa9a453209cf809152d20160599696d833c86c --- /dev/null +++ b/features/TCGA-E7-A678-01Z-00-DX1.C589E72B-7214-4EE9-A796-869C2372DD67.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22924, "total_number_of_tiles": 22924, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [102816, 87997], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 22], "6": [51, 43], "7": [101, 86], "8": [201, 172], "9": [402, 344], "10": [804, 688], "11": [1607, 1375], "12": [3213, 2750], "13": [6426, 5500], "14": [12852, 11000], "15": [25704, 22000], "16": [51408, 43999], "17": [102816, 87997]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "57b0e09aac92bd7d38a7c414163d6288"} \ No newline at end of file diff --git a/features/TCGA-E7-A6MD-01Z-00-DX1.7E0C04CD-B51E-47F7-B79D-FEEC9B5023FF.svs/features.npy b/features/TCGA-E7-A6MD-01Z-00-DX1.7E0C04CD-B51E-47F7-B79D-FEEC9B5023FF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..98832cbaf92ce27d6e06c1667e36ed212c78b7f2 --- /dev/null +++ b/features/TCGA-E7-A6MD-01Z-00-DX1.7E0C04CD-B51E-47F7-B79D-FEEC9B5023FF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:01a73988395eff590c747001d1be8cffdfea5a8cfad3e53fd060b848e315f6b0 +size 100950348 diff --git a/features/TCGA-E7-A6MD-01Z-00-DX1.7E0C04CD-B51E-47F7-B79D-FEEC9B5023FF.svs/mask.npy b/features/TCGA-E7-A6MD-01Z-00-DX1.7E0C04CD-B51E-47F7-B79D-FEEC9B5023FF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..175fe83d7ce65615541b15e8beb826fbe68e2dbe --- /dev/null +++ b/features/TCGA-E7-A6MD-01Z-00-DX1.7E0C04CD-B51E-47F7-B79D-FEEC9B5023FF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:06963ec69e3000ea74a3e68f6a26852208702e68e0c0c16fdceea2dec154b592 +size 159684800 diff --git a/features/TCGA-E7-A6MD-01Z-00-DX1.7E0C04CD-B51E-47F7-B79D-FEEC9B5023FF.svs/metadata.json b/features/TCGA-E7-A6MD-01Z-00-DX1.7E0C04CD-B51E-47F7-B79D-FEEC9B5023FF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f0d99c0ec6cd7842685943604e49f66f440daf9d --- /dev/null +++ b/features/TCGA-E7-A6MD-01Z-00-DX1.7E0C04CD-B51E-47F7-B79D-FEEC9B5023FF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12305, "total_number_of_tiles": 12305, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [110432, 92541], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [54, 46], "7": [108, 91], "8": [216, 181], "9": [432, 362], "10": [863, 723], "11": [1726, 1446], "12": [3451, 2892], "13": [6902, 5784], "14": [13804, 11568], "15": [27608, 23136], "16": [55216, 46271], "17": [110432, 92541]}, "level_mpp_mapping": {"0": 32309.248, "1": 16154.624, "2": 8077.312, "3": 4038.656, "4": 2019.328, "5": 1009.664, "6": 504.832, "7": 252.416, "8": 126.208, "9": 63.104, "10": 31.552, "11": 15.776, "12": 7.888, "13": 3.944, "14": 1.972, "15": 0.986, "16": 0.493, "17": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "af383c4c14f59d25f4759afa99f599699f856507d12cc32dd175c4d331c4c36f"} \ No newline at end of file diff --git a/features/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.svs/features.npy b/features/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..42c6a65e3d5374ba56df925467910c3c729da05d --- /dev/null +++ b/features/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7c08ca1cbde56c0358008b9dd77d4c1b9be7cbe06a93396f208f8184f7fa0106 +size 204099240 diff --git a/features/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.svs/mask.npy b/features/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8505b22e08442bfb013cb29b808303e212726c7a --- /dev/null +++ b/features/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d98d1dd4426924226b0853ea3e3459fd38ffa524e8c722571007b9c0414177b1 +size 148452608 diff --git a/features/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.svs/metadata.json b/features/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..167031f3b452a316a8ad4aab880bc79ff4d586a9 --- /dev/null +++ b/features/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24878, "total_number_of_tiles": 24878, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99960, 95035], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [25, 24], "6": [49, 47], "7": [98, 93], "8": [196, 186], "9": [391, 372], "10": [781, 743], "11": [1562, 1485], "12": [3124, 2970], "13": [6248, 5940], "14": [12495, 11880], "15": [24990, 23759], "16": [49980, 47518], "17": [99960, 95035]}, "level_mpp_mapping": {"0": 32309.248, "1": 16154.624, "2": 8077.312, "3": 4038.656, "4": 2019.328, "5": 1009.664, "6": 504.832, "7": 252.416, "8": 126.208, "9": 63.104, "10": 31.552, "11": 15.776, "12": 7.888, "13": 3.944, "14": 1.972, "15": 0.986, "16": 0.493, "17": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4480aa6b33e3d0fcc0510b714e431cf1"} \ No newline at end of file diff --git a/features/TCGA-E7-A6MF-01Z-00-DX1.2B0C8CBF-3244-4D17-B9CA-3CBE000BEC29.svs/features.npy b/features/TCGA-E7-A6MF-01Z-00-DX1.2B0C8CBF-3244-4D17-B9CA-3CBE000BEC29.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c7970d8c79c17611817268db1a5da714b6330ce7 --- /dev/null +++ b/features/TCGA-E7-A6MF-01Z-00-DX1.2B0C8CBF-3244-4D17-B9CA-3CBE000BEC29.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1d55e45390a2035522d3021b0b42675446838e5dc7d9f18beadec773b16b5bf5 +size 64163612 diff --git a/features/TCGA-E7-A6MF-01Z-00-DX1.2B0C8CBF-3244-4D17-B9CA-3CBE000BEC29.svs/mask.npy b/features/TCGA-E7-A6MF-01Z-00-DX1.2B0C8CBF-3244-4D17-B9CA-3CBE000BEC29.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ba7870108f809eb5c9ea19ee3b62c16ea8cc6b1b --- /dev/null +++ b/features/TCGA-E7-A6MF-01Z-00-DX1.2B0C8CBF-3244-4D17-B9CA-3CBE000BEC29.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cd35b621c99d0083afa1795dcfbeef433ee5560eff0b8af290e817e32aba9f6e +size 51189824 diff --git a/features/TCGA-E7-A6MF-01Z-00-DX1.2B0C8CBF-3244-4D17-B9CA-3CBE000BEC29.svs/metadata.json b/features/TCGA-E7-A6MF-01Z-00-DX1.2B0C8CBF-3244-4D17-B9CA-3CBE000BEC29.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8c950e55572caee10811d20f1ecffffcdf5d8fce --- /dev/null +++ b/features/TCGA-E7-A6MF-01Z-00-DX1.2B0C8CBF-3244-4D17-B9CA-3CBE000BEC29.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 7821, "total_number_of_tiles": 7821, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [69496, 47124], "tile_mpp": 0.493, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [34, 24], "7": [68, 47], "8": [136, 93], "9": [272, 185], "10": [543, 369], "11": [1086, 737], "12": [2172, 1473], "13": [4344, 2946], "14": [8687, 5891], "15": [17374, 11781], "16": [34748, 23562], "17": [69496, 47124]}, "level_mpp_mapping": {"0": 32309.248, "1": 16154.624, "2": 8077.312, "3": 4038.656, "4": 2019.328, "5": 1009.664, "6": 504.832, "7": 252.416, "8": 126.208, "9": 63.104, "10": 31.552, "11": 15.776, "12": 7.888, "13": 3.944, "14": 1.972, "15": 0.986, "16": 0.493, "17": 0.2465}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "eb91983dd2a80b777d81247f240dd4f31d35ec00ffc6e7e9961f3139206508ad"} \ No newline at end of file diff --git a/features/TCGA-E7-A7DU-01Z-00-DX1.25C7F59E-1F03-47EF-9F17-DB9ADB16276E.svs/features.npy b/features/TCGA-E7-A7DU-01Z-00-DX1.25C7F59E-1F03-47EF-9F17-DB9ADB16276E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..dadec09acf2347173a8340514d7f7397e05d44f2 --- /dev/null +++ b/features/TCGA-E7-A7DU-01Z-00-DX1.25C7F59E-1F03-47EF-9F17-DB9ADB16276E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cb9ca0c6d61c216b10c5c222d8a145db6cdb4b8fe7fc0b0e5bea29e97d7d55ae +size 237432092 diff --git a/features/TCGA-E7-A7DU-01Z-00-DX1.25C7F59E-1F03-47EF-9F17-DB9ADB16276E.svs/mask.npy b/features/TCGA-E7-A7DU-01Z-00-DX1.25C7F59E-1F03-47EF-9F17-DB9ADB16276E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..777bb19440197d61c64ef85b1bc71b3461e1f2e4 --- /dev/null +++ b/features/TCGA-E7-A7DU-01Z-00-DX1.25C7F59E-1F03-47EF-9F17-DB9ADB16276E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1d6cc07d9b7b7dc4281bcf46ec79bfcd5b2ca648ea31ed5cd6fa5936492589b7 +size 158787064 diff --git a/features/TCGA-E7-A7DU-01Z-00-DX1.25C7F59E-1F03-47EF-9F17-DB9ADB16276E.svs/metadata.json b/features/TCGA-E7-A7DU-01Z-00-DX1.25C7F59E-1F03-47EF-9F17-DB9ADB16276E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6c37d075ff36a0727b5ad4c314fe643b107dc7e8 --- /dev/null +++ b/features/TCGA-E7-A7DU-01Z-00-DX1.25C7F59E-1F03-47EF-9F17-DB9ADB16276E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 28941, "total_number_of_tiles": 28941, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [112336, 90456], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [28, 23], "6": [55, 45], "7": [110, 89], "8": [220, 177], "9": [439, 354], "10": [878, 707], "11": [1756, 1414], "12": [3511, 2827], "13": [7021, 5654], "14": [14042, 11307], "15": [28084, 22614], "16": [56168, 45228], "17": [112336, 90456]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "999dbfa6fcb30ceb27c72c9909f68037"} \ No newline at end of file diff --git a/features/TCGA-E7-A7DV-01Z-00-DX1.FCE4752B-30BC-4747-A9F4-38141E09F005.svs/features.npy b/features/TCGA-E7-A7DV-01Z-00-DX1.FCE4752B-30BC-4747-A9F4-38141E09F005.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..bfa1b308ad3a6e6931fffbcae21fd484f23a8d3e --- /dev/null +++ b/features/TCGA-E7-A7DV-01Z-00-DX1.FCE4752B-30BC-4747-A9F4-38141E09F005.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:88b989cc96d8d0bd885cd3a36c5eaefedc029bdb6abb37c83227fdb40fff7d09 +size 256407944 diff --git a/features/TCGA-E7-A7DV-01Z-00-DX1.FCE4752B-30BC-4747-A9F4-38141E09F005.svs/mask.npy b/features/TCGA-E7-A7DV-01Z-00-DX1.FCE4752B-30BC-4747-A9F4-38141E09F005.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7692a84ba22cae6a0accd0a1cb98c7f0c65c632b --- /dev/null +++ b/features/TCGA-E7-A7DV-01Z-00-DX1.FCE4752B-30BC-4747-A9F4-38141E09F005.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cd9988b4a030a28a1e43907e719177bfc92350086a67d2d5e6979b20df4e2f48 +size 148191296 diff --git a/features/TCGA-E7-A7DV-01Z-00-DX1.FCE4752B-30BC-4747-A9F4-38141E09F005.svs/metadata.json b/features/TCGA-E7-A7DV-01Z-00-DX1.FCE4752B-30BC-4747-A9F4-38141E09F005.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a0421cff4240bfc1b4213c6a044b03f04f65fa5f --- /dev/null +++ b/features/TCGA-E7-A7DV-01Z-00-DX1.FCE4752B-30BC-4747-A9F4-38141E09F005.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31254, "total_number_of_tiles": 31254, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113288, 83709], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [28, 21], "6": [56, 41], "7": [111, 82], "8": [222, 164], "9": [443, 327], "10": [886, 654], "11": [1771, 1308], "12": [3541, 2616], "13": [7081, 5232], "14": [14161, 10464], "15": [28322, 20928], "16": [56644, 41855], "17": [113288, 83709]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ac02d95cf67642af607c0429d8c10bae"} \ No newline at end of file diff --git a/features/TCGA-E7-A7PW-01Z-00-DX1.27B92FC6-D50C-4816-A2C2-35E73D379DDD.svs/features.npy b/features/TCGA-E7-A7PW-01Z-00-DX1.27B92FC6-D50C-4816-A2C2-35E73D379DDD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4541c28f280e42ff50318e7b18b5f9d338afe152 --- /dev/null +++ b/features/TCGA-E7-A7PW-01Z-00-DX1.27B92FC6-D50C-4816-A2C2-35E73D379DDD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e18453c32fe93b76624732081d347b849feb68f5e640eaa8439f0b7091b56416 +size 230319224 diff --git a/features/TCGA-E7-A7PW-01Z-00-DX1.27B92FC6-D50C-4816-A2C2-35E73D379DDD.svs/mask.npy b/features/TCGA-E7-A7PW-01Z-00-DX1.27B92FC6-D50C-4816-A2C2-35E73D379DDD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..aff2f87c69456d94134f9ae6f8e50258f831f3f8 --- /dev/null +++ b/features/TCGA-E7-A7PW-01Z-00-DX1.27B92FC6-D50C-4816-A2C2-35E73D379DDD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85065f89a47252ab5f92170fa7a25ae66b9fe02d00a9bb6fbf669c28a07e6b6c +size 132418328 diff --git a/features/TCGA-E7-A7PW-01Z-00-DX1.27B92FC6-D50C-4816-A2C2-35E73D379DDD.svs/metadata.json b/features/TCGA-E7-A7PW-01Z-00-DX1.27B92FC6-D50C-4816-A2C2-35E73D379DDD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8c41f572ca5da9e01daf652d5b1668a812a77408 --- /dev/null +++ b/features/TCGA-E7-A7PW-01Z-00-DX1.27B92FC6-D50C-4816-A2C2-35E73D379DDD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 28074, "total_number_of_tiles": 28074, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99599, 85079], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [25, 21], "6": [49, 42], "7": [98, 84], "8": [195, 167], "9": [390, 333], "10": [779, 665], "11": [1557, 1330], "12": [3113, 2659], "13": [6225, 5318], "14": [12450, 10635], "15": [24900, 21270], "16": [49800, 42540], "17": [99599, 85079]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "40a26a7ac23e896a427cf1e9b5464b74"} \ No newline at end of file diff --git a/features/TCGA-E7-A7XN-01Z-00-DX1.5C955881-5B13-4D6B-B99C-E849ADCDE647.svs/features.npy b/features/TCGA-E7-A7XN-01Z-00-DX1.5C955881-5B13-4D6B-B99C-E849ADCDE647.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5c7b86c05c6f44547e132a301eda2dbf6f350fa7 --- /dev/null +++ b/features/TCGA-E7-A7XN-01Z-00-DX1.5C955881-5B13-4D6B-B99C-E849ADCDE647.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:30f79006ce0df9caa8ccc5350f50c2822d056a3337bdfdc8655234359752abda +size 200079280 diff --git a/features/TCGA-E7-A7XN-01Z-00-DX1.5C955881-5B13-4D6B-B99C-E849ADCDE647.svs/mask.npy b/features/TCGA-E7-A7XN-01Z-00-DX1.5C955881-5B13-4D6B-B99C-E849ADCDE647.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8fbb88817345a7ca8d0532bd34c1bbdbd095c90a --- /dev/null +++ b/features/TCGA-E7-A7XN-01Z-00-DX1.5C955881-5B13-4D6B-B99C-E849ADCDE647.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4886d43b1cbc674c9579e2cc799e7f0fe1eea65fc8c5c2d9f4b9558caf42368a +size 176023208 diff --git a/features/TCGA-E7-A7XN-01Z-00-DX1.5C955881-5B13-4D6B-B99C-E849ADCDE647.svs/metadata.json b/features/TCGA-E7-A7XN-01Z-00-DX1.5C955881-5B13-4D6B-B99C-E849ADCDE647.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..be88ff24f7731154f3a5b99ebdc9512a8dc3b98f --- /dev/null +++ b/features/TCGA-E7-A7XN-01Z-00-DX1.5C955881-5B13-4D6B-B99C-E849ADCDE647.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24388, "total_number_of_tiles": 24388, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119519, 94252], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 24], "6": [59, 47], "7": [117, 93], "8": [234, 185], "9": [467, 369], "10": [934, 737], "11": [1868, 1473], "12": [3735, 2946], "13": [7470, 5891], "14": [14940, 11782], "15": [29880, 23563], "16": [59760, 47126], "17": [119519, 94252]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7c0a45c5a2bd3e0b9ef6e49d8e2ebe60"} \ No newline at end of file diff --git a/features/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.svs/features.npy b/features/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0ca7c95f160352ba9a1f2fb1ea2a32a2dfca809f --- /dev/null +++ b/features/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d96e83052f07c164485be205d292d94161442d18c6bb6032d9c2209771fcd1a7 +size 241164912 diff --git a/features/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.svs/mask.npy b/features/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..72bdd1a63195d5da782010a19c8aeee9d1c1c869 --- /dev/null +++ b/features/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:56da09f6d1fd2d8d173b5a9946705e522865b22c7ec1caf3feb4471f23105d57 +size 183337832 diff --git a/features/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.svs/metadata.json b/features/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6ecbe3987279012d944d62513614d482f0799c7b --- /dev/null +++ b/features/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29396, "total_number_of_tiles": 29396, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [131472, 89246], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [33, 22], "7": [65, 44], "8": [129, 88], "9": [257, 175], "10": [514, 349], "11": [1028, 698], "12": [2055, 1395], "13": [4109, 2789], "14": [8217, 5578], "15": [16434, 11156], "16": [32868, 22312], "17": [65736, 44623], "18": [131472, 89246]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3195835940f1cc330df78a1329848ce95aabc3027c6cac6451f56c8064004ce2"} \ No newline at end of file diff --git a/features/TCGA-E7-A8O7-01Z-00-DX1.E3D79C43-608D-40A1-9F65-0414FDF27741.svs/features.npy b/features/TCGA-E7-A8O7-01Z-00-DX1.E3D79C43-608D-40A1-9F65-0414FDF27741.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8f7843384c2c37ed6fed759bdc279663a03d7ac6 --- /dev/null +++ b/features/TCGA-E7-A8O7-01Z-00-DX1.E3D79C43-608D-40A1-9F65-0414FDF27741.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7d5ecc2209a7d3e497636b3e3912491bed36b0b33ee7d67cc3cd733729527011 +size 138647728 diff --git a/features/TCGA-E7-A8O7-01Z-00-DX1.E3D79C43-608D-40A1-9F65-0414FDF27741.svs/mask.npy b/features/TCGA-E7-A8O7-01Z-00-DX1.E3D79C43-608D-40A1-9F65-0414FDF27741.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..51f71cb738cfecfdaa88c396701ab2a8334535d4 --- /dev/null +++ b/features/TCGA-E7-A8O7-01Z-00-DX1.E3D79C43-608D-40A1-9F65-0414FDF27741.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:426629a4c71a2ea5deacf8735de19ee6f5048f7278cfb5851d7a5c5292544d97 +size 113622144 diff --git a/features/TCGA-E7-A8O7-01Z-00-DX1.E3D79C43-608D-40A1-9F65-0414FDF27741.svs/metadata.json b/features/TCGA-E7-A8O7-01Z-00-DX1.E3D79C43-608D-40A1-9F65-0414FDF27741.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..82c529ac1af8c0c4e3bf859106f9a5945ddd363b --- /dev/null +++ b/features/TCGA-E7-A8O7-01Z-00-DX1.E3D79C43-608D-40A1-9F65-0414FDF27741.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16900, "total_number_of_tiles": 16900, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109560, 66366], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 9], "5": [27, 17], "6": [54, 33], "7": [107, 65], "8": [214, 130], "9": [428, 260], "10": [856, 519], "11": [1712, 1037], "12": [3424, 2074], "13": [6848, 4148], "14": [13695, 8296], "15": [27390, 16592], "16": [54780, 33183], "17": [109560, 66366]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ae5b24bafb9164ad39dbc2ac60e0e5a4"} \ No newline at end of file diff --git a/features/TCGA-E7-A8O8-01Z-00-DX1.009173C4-BC8E-4B96-98FC-E24A39438F4E.svs/features.npy b/features/TCGA-E7-A8O8-01Z-00-DX1.009173C4-BC8E-4B96-98FC-E24A39438F4E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a7651333eb66b6247efe3c3922fac0128668a22c --- /dev/null +++ b/features/TCGA-E7-A8O8-01Z-00-DX1.009173C4-BC8E-4B96-98FC-E24A39438F4E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cd0da3b33edae07d3d732683ebaf7863444d711eb18c4896bfdcb958194058f3 +size 90547676 diff --git a/features/TCGA-E7-A8O8-01Z-00-DX1.009173C4-BC8E-4B96-98FC-E24A39438F4E.svs/mask.npy b/features/TCGA-E7-A8O8-01Z-00-DX1.009173C4-BC8E-4B96-98FC-E24A39438F4E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..aa026ee8539d35723c0648035ad110d3d3499bcc --- /dev/null +++ b/features/TCGA-E7-A8O8-01Z-00-DX1.009173C4-BC8E-4B96-98FC-E24A39438F4E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:09bd8df0e2f92db49f2752489f15aef4522509eefdbdee6f15d724f1c5ed86e1 +size 111452528 diff --git a/features/TCGA-E7-A8O8-01Z-00-DX1.009173C4-BC8E-4B96-98FC-E24A39438F4E.svs/metadata.json b/features/TCGA-E7-A8O8-01Z-00-DX1.009173C4-BC8E-4B96-98FC-E24A39438F4E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b84c366a2db060af4e52acfd1f71bf75351ed04d --- /dev/null +++ b/features/TCGA-E7-A8O8-01Z-00-DX1.009173C4-BC8E-4B96-98FC-E24A39438F4E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11037, "total_number_of_tiles": 11037, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99599, 71604], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 9], "5": [25, 18], "6": [49, 35], "7": [98, 70], "8": [195, 140], "9": [390, 280], "10": [779, 560], "11": [1557, 1119], "12": [3113, 2238], "13": [6225, 4476], "14": [12450, 8951], "15": [24900, 17901], "16": [49800, 35802], "17": [99599, 71604]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8c7d3c2587ab7291d2d3bdcfe05ea68fd55bfa9a2ad0c272b803b4ac1fd5eb9b"} \ No newline at end of file diff --git a/features/TCGA-E7-A97P-01Z-00-DX1.09FD969F-62C2-4C79-A826-657A7991C87B.svs/features.npy b/features/TCGA-E7-A97P-01Z-00-DX1.09FD969F-62C2-4C79-A826-657A7991C87B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..fd49218dc48646abfee131da602270bee4371b7a --- /dev/null +++ b/features/TCGA-E7-A97P-01Z-00-DX1.09FD969F-62C2-4C79-A826-657A7991C87B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ccc1632b498a75da3ed45832e71f87a7f0e165768a18c4929f9174419dea41b4 +size 100228396 diff --git a/features/TCGA-E7-A97P-01Z-00-DX1.09FD969F-62C2-4C79-A826-657A7991C87B.svs/mask.npy b/features/TCGA-E7-A97P-01Z-00-DX1.09FD969F-62C2-4C79-A826-657A7991C87B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8d4bfd98f3465a915e84bf895996513974ec074f --- /dev/null +++ b/features/TCGA-E7-A97P-01Z-00-DX1.09FD969F-62C2-4C79-A826-657A7991C87B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1261c8f25f78265a44c69827e9df0bdd1f4723716236f505fd0b51d37b7015bd +size 109577808 diff --git a/features/TCGA-E7-A97P-01Z-00-DX1.09FD969F-62C2-4C79-A826-657A7991C87B.svs/metadata.json b/features/TCGA-E7-A97P-01Z-00-DX1.09FD969F-62C2-4C79-A826-657A7991C87B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..059795c2eb133cbd1f9948df64e61b99bd7ca289 --- /dev/null +++ b/features/TCGA-E7-A97P-01Z-00-DX1.09FD969F-62C2-4C79-A826-657A7991C87B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12217, "total_number_of_tiles": 12217, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113543, 61757], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [7, 4], "4": [14, 8], "5": [28, 16], "6": [56, 31], "7": [111, 61], "8": [222, 121], "9": [444, 242], "10": [888, 483], "11": [1775, 965], "12": [3549, 1930], "13": [7097, 3860], "14": [14193, 7720], "15": [28386, 15440], "16": [56772, 30879], "17": [113543, 61757]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a72ce3df53cbf2a89e6d8bd6ff10a53c8d4748fdd5d1f8e77d20dfdc6bad4ec0"} \ No newline at end of file diff --git a/features/TCGA-E7-A97Q-01Z-00-DX1.821AF545-5433-4D2C-AACE-EA206E15B13D.svs/features.npy b/features/TCGA-E7-A97Q-01Z-00-DX1.821AF545-5433-4D2C-AACE-EA206E15B13D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..acf4ae05597090e54f9e52d2f488fcd48d6a388d --- /dev/null +++ b/features/TCGA-E7-A97Q-01Z-00-DX1.821AF545-5433-4D2C-AACE-EA206E15B13D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a416ac25b22b5c096fbb553fde609087b8e44010d40a69a24aeaa52c29035b3b +size 32036748 diff --git a/features/TCGA-E7-A97Q-01Z-00-DX1.821AF545-5433-4D2C-AACE-EA206E15B13D.svs/mask.npy b/features/TCGA-E7-A97Q-01Z-00-DX1.821AF545-5433-4D2C-AACE-EA206E15B13D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5b84a1d086dbf4d4e9f716ff47752cbe3ade2093 --- /dev/null +++ b/features/TCGA-E7-A97Q-01Z-00-DX1.821AF545-5433-4D2C-AACE-EA206E15B13D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:54206d74bf65612a941c37fc410b9736a1513958481ad27e52a91853613b996d +size 36812288 diff --git a/features/TCGA-E7-A97Q-01Z-00-DX1.821AF545-5433-4D2C-AACE-EA206E15B13D.svs/metadata.json b/features/TCGA-E7-A97Q-01Z-00-DX1.821AF545-5433-4D2C-AACE-EA206E15B13D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ed2e490dbb1f350f7630cbd8bed9678c299e34d7 --- /dev/null +++ b/features/TCGA-E7-A97Q-01Z-00-DX1.821AF545-5433-4D2C-AACE-EA206E15B13D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 3905, "total_number_of_tiles": 3905, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [43823, 53754], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 4], "3": [6, 7], "4": [11, 14], "5": [22, 27], "6": [43, 53], "7": [86, 105], "8": [172, 210], "9": [343, 420], "10": [685, 840], "11": [1370, 1680], "12": [2739, 3360], "13": [5478, 6720], "14": [10956, 13439], "15": [21912, 26877], "16": [43823, 53754]}, "level_mpp_mapping": {"0": 16560.9472, "1": 8280.4736, "2": 4140.2368, "3": 2070.1184, "4": 1035.0592, "5": 517.5296, "6": 258.7648, "7": 129.3824, "8": 64.6912, "9": 32.3456, "10": 16.1728, "11": 8.0864, "12": 4.0432, "13": 2.0216, "14": 1.0108, "15": 0.5054, "16": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "655fd01560094f76958702198f00a9026d2d449d41caba9c929330f87b0d94e0"} \ No newline at end of file diff --git a/features/TCGA-FD-A3B3-01Z-00-DX1.CD634C50-2746-468E-BEEC-50E76E400602.svs/features.npy b/features/TCGA-FD-A3B3-01Z-00-DX1.CD634C50-2746-468E-BEEC-50E76E400602.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a452ecb8268007909d1c4b1fd7e3734153da572a --- /dev/null +++ b/features/TCGA-FD-A3B3-01Z-00-DX1.CD634C50-2746-468E-BEEC-50E76E400602.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6814491cb809eff28679edf499220af0a1f9bed3ced0c8cbcd05ecf193823c39 +size 190308316 diff --git a/features/TCGA-FD-A3B3-01Z-00-DX1.CD634C50-2746-468E-BEEC-50E76E400602.svs/mask.npy b/features/TCGA-FD-A3B3-01Z-00-DX1.CD634C50-2746-468E-BEEC-50E76E400602.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..112c9dd1fd01248b47d243af3a13ae9829c8eb57 --- /dev/null +++ b/features/TCGA-FD-A3B3-01Z-00-DX1.CD634C50-2746-468E-BEEC-50E76E400602.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f3ba6914abdc4f59ff19ef1e5c314df05acd369d08fbf17755af600dd54fb739 +size 181865448 diff --git a/features/TCGA-FD-A3B3-01Z-00-DX1.CD634C50-2746-468E-BEEC-50E76E400602.svs/metadata.json b/features/TCGA-FD-A3B3-01Z-00-DX1.CD634C50-2746-468E-BEEC-50E76E400602.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..00c163ea538dd7abceb97958c03eb92c7c2881ea --- /dev/null +++ b/features/TCGA-FD-A3B3-01Z-00-DX1.CD634C50-2746-468E-BEEC-50E76E400602.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23197, "total_number_of_tiles": 23197, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123760, 94034], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [61, 46], "7": [121, 92], "8": [242, 184], "9": [484, 368], "10": [967, 735], "11": [1934, 1470], "12": [3868, 2939], "13": [7735, 5878], "14": [15470, 11755], "15": [30940, 23509], "16": [61880, 47017], "17": [123760, 94034]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "447997834db469db23a0089602ab8a90"} \ No newline at end of file diff --git a/features/TCGA-FD-A3B4-01Z-00-DX1.45B61DCC-09B4-4863-875A-ED1DEECE5F27.svs/features.npy b/features/TCGA-FD-A3B4-01Z-00-DX1.45B61DCC-09B4-4863-875A-ED1DEECE5F27.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0f082e6665f887a40ea5f3b40a93e0e480303e36 --- /dev/null +++ b/features/TCGA-FD-A3B4-01Z-00-DX1.45B61DCC-09B4-4863-875A-ED1DEECE5F27.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5af3ba043763de461a4563e099870d2baef005c9f851c88f3fa0cc21d3dd51dd +size 303564536 diff --git a/features/TCGA-FD-A3B4-01Z-00-DX1.45B61DCC-09B4-4863-875A-ED1DEECE5F27.svs/mask.npy b/features/TCGA-FD-A3B4-01Z-00-DX1.45B61DCC-09B4-4863-875A-ED1DEECE5F27.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3b2168325bd889d5df545ba7f0f7ddb1e62faf68 --- /dev/null +++ b/features/TCGA-FD-A3B4-01Z-00-DX1.45B61DCC-09B4-4863-875A-ED1DEECE5F27.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4969a746f6d75175358a073094dcba366371574102aee0e9fa16c24bcb2b0d5 +size 166545248 diff --git a/features/TCGA-FD-A3B4-01Z-00-DX1.45B61DCC-09B4-4863-875A-ED1DEECE5F27.svs/metadata.json b/features/TCGA-FD-A3B4-01Z-00-DX1.45B61DCC-09B4-4863-875A-ED1DEECE5F27.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..197c04512902955711af9d6fdc211e815a71e9f9 --- /dev/null +++ b/features/TCGA-FD-A3B4-01Z-00-DX1.45B61DCC-09B4-4863-875A-ED1DEECE5F27.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 37002, "total_number_of_tiles": 37002, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113288, 94072], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [28, 23], "6": [56, 46], "7": [111, 92], "8": [222, 184], "9": [443, 368], "10": [886, 735], "11": [1771, 1470], "12": [3541, 2940], "13": [7081, 5880], "14": [14161, 11759], "15": [28322, 23518], "16": [56644, 47036], "17": [113288, 94072]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "50d889b69a668be127cc0935d68df617"} \ No newline at end of file diff --git a/features/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.svs/features.npy b/features/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..29fdd0e7acc2ddb73031f354bbb8fb6f657bee50 --- /dev/null +++ b/features/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a904fec8124695beaf6a9d781be95527515d2c7819510f964d5e85d0418d6af +size 279067392 diff --git a/features/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.svs/mask.npy b/features/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..642d3a501c89d05ed38303f5e76a8deaaf14ede8 --- /dev/null +++ b/features/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e68e0d1f92c0096e934fb34f97112f8556717cda146feee9ba7a24f24a710c1f +size 178574592 diff --git a/features/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.svs/metadata.json b/features/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..db4898d090a6efe3d6ef21a3e8a9672514deeb25 --- /dev/null +++ b/features/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 34016, "total_number_of_tiles": 34016, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [122808, 93052], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 23], "6": [60, 46], "7": [120, 91], "8": [240, 182], "9": [480, 364], "10": [960, 727], "11": [1919, 1454], "12": [3838, 2908], "13": [7676, 5816], "14": [15351, 11632], "15": [30702, 23263], "16": [61404, 46526], "17": [122808, 93052]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2c101b09da9da29e5910722d701f34bf"} \ No newline at end of file diff --git a/features/TCGA-FD-A3B6-01Z-00-DX1.04CCC012-F2FF-4CBA-9A2C-8EC979427204.svs/features.npy b/features/TCGA-FD-A3B6-01Z-00-DX1.04CCC012-F2FF-4CBA-9A2C-8EC979427204.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..736e395a9cadfa571d9da3903b5c1560826db9e2 --- /dev/null +++ b/features/TCGA-FD-A3B6-01Z-00-DX1.04CCC012-F2FF-4CBA-9A2C-8EC979427204.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4e2a829523b9e83cd681a965086a6ff5fcc57db5b067c765ea427066175efced +size 193114084 diff --git a/features/TCGA-FD-A3B6-01Z-00-DX1.04CCC012-F2FF-4CBA-9A2C-8EC979427204.svs/mask.npy b/features/TCGA-FD-A3B6-01Z-00-DX1.04CCC012-F2FF-4CBA-9A2C-8EC979427204.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ee73a49737b1ed5c1144b706518987e1976ba58b --- /dev/null +++ b/features/TCGA-FD-A3B6-01Z-00-DX1.04CCC012-F2FF-4CBA-9A2C-8EC979427204.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:212dff9943d11391ec7afe63bfc259f72a8a221b96ba0f91b6017764919d2fbe +size 152602736 diff --git a/features/TCGA-FD-A3B6-01Z-00-DX1.04CCC012-F2FF-4CBA-9A2C-8EC979427204.svs/metadata.json b/features/TCGA-FD-A3B6-01Z-00-DX1.04CCC012-F2FF-4CBA-9A2C-8EC979427204.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f7963d47aa1f1036b00437f1734fd74fae8ae817 --- /dev/null +++ b/features/TCGA-FD-A3B6-01Z-00-DX1.04CCC012-F2FF-4CBA-9A2C-8EC979427204.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23539, "total_number_of_tiles": 23539, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [103768, 94108], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [26, 23], "6": [51, 46], "7": [102, 92], "8": [203, 184], "9": [406, 368], "10": [811, 736], "11": [1622, 1471], "12": [3243, 2941], "13": [6486, 5882], "14": [12971, 11764], "15": [25942, 23527], "16": [51884, 47054], "17": [103768, 94108]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "380d0a1ae64eebe95c12a42ba1cdd148"} \ No newline at end of file diff --git a/features/TCGA-FD-A3B7-01Z-00-DX1.758419EB-E5A3-4383-817A-B3870FBA1776.svs/features.npy b/features/TCGA-FD-A3B7-01Z-00-DX1.758419EB-E5A3-4383-817A-B3870FBA1776.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9530ccf7a78777162dec96aedb82fae7520bdf87 --- /dev/null +++ b/features/TCGA-FD-A3B7-01Z-00-DX1.758419EB-E5A3-4383-817A-B3870FBA1776.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b5a81d6bc6ea1072c68a5999539caf7e3f0c63cd36991e6a57b13b2bafc4f183 +size 248031660 diff --git a/features/TCGA-FD-A3B7-01Z-00-DX1.758419EB-E5A3-4383-817A-B3870FBA1776.svs/mask.npy b/features/TCGA-FD-A3B7-01Z-00-DX1.758419EB-E5A3-4383-817A-B3870FBA1776.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..218d511fbc6a1be1d6cebcb3da16540299e0e268 --- /dev/null +++ b/features/TCGA-FD-A3B7-01Z-00-DX1.758419EB-E5A3-4383-817A-B3870FBA1776.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5fe3173477eae7bf376cebbcb850cf67d8d6525d7c981166f775a956f1410f9d +size 165803780 diff --git a/features/TCGA-FD-A3B7-01Z-00-DX1.758419EB-E5A3-4383-817A-B3870FBA1776.svs/metadata.json b/features/TCGA-FD-A3B7-01Z-00-DX1.758419EB-E5A3-4383-817A-B3870FBA1776.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3e3376843745d2858b65c45b29158a356f6ae744 --- /dev/null +++ b/features/TCGA-FD-A3B7-01Z-00-DX1.758419EB-E5A3-4383-817A-B3870FBA1776.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 30233, "total_number_of_tiles": 30233, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119952, 88454], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [30, 22], "6": [59, 44], "7": [118, 87], "8": [235, 173], "9": [469, 346], "10": [938, 692], "11": [1875, 1383], "12": [3749, 2765], "13": [7497, 5529], "14": [14994, 11057], "15": [29988, 22114], "16": [59976, 44227], "17": [119952, 88454]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "80322580991d70059c93212e3e2eeefa"} \ No newline at end of file diff --git a/features/TCGA-FD-A3B8-01Z-00-DX1.85E75835-8607-47C3-B8BD-4F01E54E5574.svs/features.npy b/features/TCGA-FD-A3B8-01Z-00-DX1.85E75835-8607-47C3-B8BD-4F01E54E5574.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..707e9cf9b3c023442d0a430a4b841b4373987fe4 --- /dev/null +++ b/features/TCGA-FD-A3B8-01Z-00-DX1.85E75835-8607-47C3-B8BD-4F01E54E5574.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9d7b0f7d33ffc00e6774398e577a907ef76c2913e73593f9741984ea4daffac1 +size 131116456 diff --git a/features/TCGA-FD-A3B8-01Z-00-DX1.85E75835-8607-47C3-B8BD-4F01E54E5574.svs/mask.npy b/features/TCGA-FD-A3B8-01Z-00-DX1.85E75835-8607-47C3-B8BD-4F01E54E5574.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..724dd2c31db1b540738e9231f6c64354bc2802b0 --- /dev/null +++ b/features/TCGA-FD-A3B8-01Z-00-DX1.85E75835-8607-47C3-B8BD-4F01E54E5574.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c2e5fe39bf3611c44d861d9092f0ba971548e0640b654f8d1076777d68f6c997 +size 128009152 diff --git a/features/TCGA-FD-A3B8-01Z-00-DX1.85E75835-8607-47C3-B8BD-4F01E54E5574.svs/metadata.json b/features/TCGA-FD-A3B8-01Z-00-DX1.85E75835-8607-47C3-B8BD-4F01E54E5574.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..51e77c4b6b220c66b4b5c94fb00116df0324dbc1 --- /dev/null +++ b/features/TCGA-FD-A3B8-01Z-00-DX1.85E75835-8607-47C3-B8BD-4F01E54E5574.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15982, "total_number_of_tiles": 15982, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99960, 81947], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [25, 21], "6": [49, 41], "7": [98, 81], "8": [196, 161], "9": [391, 321], "10": [781, 641], "11": [1562, 1281], "12": [3124, 2561], "13": [6248, 5122], "14": [12495, 10244], "15": [24990, 20487], "16": [49980, 40974], "17": [99960, 81947]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "cec3248747edc02bf9dd1af9bd2baadc"} \ No newline at end of file diff --git a/features/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.svs/features.npy b/features/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f8b88eac7da1acadcdd39fa2b0773306d236e472 --- /dev/null +++ b/features/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f43f67241a598c14294f8ddcac02db1cbf0b0527962372fc05b3277a61f214d7 +size 237079320 diff --git a/features/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.svs/mask.npy b/features/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0be411bfb419f7a43507bc7fef5b9485ad78c139 --- /dev/null +++ b/features/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bfebf5c1e09e7eb391fbec002a9b683c2b86d021327c5b4faf35c7f1c14735a0 +size 151191056 diff --git a/features/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.svs/metadata.json b/features/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..388e5184288a4a2db41484be7e3220d3ac5661b1 --- /dev/null +++ b/features/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 28898, "total_number_of_tiles": 28898, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [102816, 94110], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [26, 23], "6": [51, 46], "7": [101, 92], "8": [201, 184], "9": [402, 368], "10": [804, 736], "11": [1607, 1471], "12": [3213, 2941], "13": [6426, 5882], "14": [12852, 11764], "15": [25704, 23528], "16": [51408, 47055], "17": [102816, 94110]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "26bbc93c77c83e005ab7bd11179b5ce2"} \ No newline at end of file diff --git a/features/TCGA-FD-A3N6-01Z-00-DX1.C94C21D1-83F2-45EE-A7BE-6A4E5C9B1A89.svs/features.npy b/features/TCGA-FD-A3N6-01Z-00-DX1.C94C21D1-83F2-45EE-A7BE-6A4E5C9B1A89.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7fc186a98a293b408f88ed8039bebe7cef6de452 --- /dev/null +++ b/features/TCGA-FD-A3N6-01Z-00-DX1.C94C21D1-83F2-45EE-A7BE-6A4E5C9B1A89.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2156251fe2a5bb670e263998d310736e331e5701906402a3c2bee872ddf04e67 +size 241698172 diff --git a/features/TCGA-FD-A3N6-01Z-00-DX1.C94C21D1-83F2-45EE-A7BE-6A4E5C9B1A89.svs/mask.npy b/features/TCGA-FD-A3N6-01Z-00-DX1.C94C21D1-83F2-45EE-A7BE-6A4E5C9B1A89.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3b747cc446d024be50568a09c5029150e8d78a1b --- /dev/null +++ b/features/TCGA-FD-A3N6-01Z-00-DX1.C94C21D1-83F2-45EE-A7BE-6A4E5C9B1A89.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3bc0408b57d819ca213c733f92319f763deb02bd0086b6148b7b67be7f25f263 +size 150051988 diff --git a/features/TCGA-FD-A3N6-01Z-00-DX1.C94C21D1-83F2-45EE-A7BE-6A4E5C9B1A89.svs/metadata.json b/features/TCGA-FD-A3N6-01Z-00-DX1.C94C21D1-83F2-45EE-A7BE-6A4E5C9B1A89.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4ec01fe74104be654dba96fecc6136054bca8f1b --- /dev/null +++ b/features/TCGA-FD-A3N6-01Z-00-DX1.C94C21D1-83F2-45EE-A7BE-6A4E5C9B1A89.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29461, "total_number_of_tiles": 29461, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [127568, 75266], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [32, 19], "6": [63, 37], "7": [125, 74], "8": [250, 148], "9": [499, 295], "10": [997, 589], "11": [1994, 1177], "12": [3987, 2353], "13": [7973, 4705], "14": [15946, 9409], "15": [31892, 18817], "16": [63784, 37633], "17": [127568, 75266]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a345056c96830be61e3372853025be10"} \ No newline at end of file diff --git a/features/TCGA-FD-A3NA-01Z-00-DX1.2AD62CEE-0D76-4382-AE2E-9B7FCB1130D9.svs/features.npy b/features/TCGA-FD-A3NA-01Z-00-DX1.2AD62CEE-0D76-4382-AE2E-9B7FCB1130D9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8ca73cfa167780c11afdd2e87cfb62a474c62c37 --- /dev/null +++ b/features/TCGA-FD-A3NA-01Z-00-DX1.2AD62CEE-0D76-4382-AE2E-9B7FCB1130D9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a21a771b7337c1f415031c6ac7d54802e996365901f16cd080107845187945b1 +size 280035464 diff --git a/features/TCGA-FD-A3NA-01Z-00-DX1.2AD62CEE-0D76-4382-AE2E-9B7FCB1130D9.svs/mask.npy b/features/TCGA-FD-A3NA-01Z-00-DX1.2AD62CEE-0D76-4382-AE2E-9B7FCB1130D9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..cea680dbd6abdfcf88444924d2750d94d296b087 --- /dev/null +++ b/features/TCGA-FD-A3NA-01Z-00-DX1.2AD62CEE-0D76-4382-AE2E-9B7FCB1130D9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7cea0473ed630b0fe5f20f8536e61a0f02230d65053110df1241a483d00a7c97 +size 186042440 diff --git a/features/TCGA-FD-A3NA-01Z-00-DX1.2AD62CEE-0D76-4382-AE2E-9B7FCB1130D9.svs/metadata.json b/features/TCGA-FD-A3NA-01Z-00-DX1.2AD62CEE-0D76-4382-AE2E-9B7FCB1130D9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9423b77179becf5a8a381cd2f7dbabd739da45af --- /dev/null +++ b/features/TCGA-FD-A3NA-01Z-00-DX1.2AD62CEE-0D76-4382-AE2E-9B7FCB1130D9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 34134, "total_number_of_tiles": 34134, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [126616, 94025], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [62, 46], "7": [124, 92], "8": [248, 184], "9": [495, 368], "10": [990, 735], "11": [1979, 1470], "12": [3957, 2939], "13": [7914, 5877], "14": [15827, 11754], "15": [31654, 23507], "16": [63308, 47013], "17": [126616, 94025]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1f1159dde68a8f945ec7ecf9bb5bf9d6"} \ No newline at end of file diff --git a/features/TCGA-FD-A3SJ-01Z-00-DX1.CF7DF110-22A8-4071-9717-A71915407248.svs/features.npy b/features/TCGA-FD-A3SJ-01Z-00-DX1.CF7DF110-22A8-4071-9717-A71915407248.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c70a1621de1c8d461006f769b834cb7390e01942 --- /dev/null +++ b/features/TCGA-FD-A3SJ-01Z-00-DX1.CF7DF110-22A8-4071-9717-A71915407248.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b02e31095812873c86a220491b9acb4d21fee1db59cfa79fa4086b0a5084417d +size 262331232 diff --git a/features/TCGA-FD-A3SJ-01Z-00-DX1.CF7DF110-22A8-4071-9717-A71915407248.svs/mask.npy b/features/TCGA-FD-A3SJ-01Z-00-DX1.CF7DF110-22A8-4071-9717-A71915407248.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6fcb9ca27f5ef4643a43f7c799cf5b798fd07e43 --- /dev/null +++ b/features/TCGA-FD-A3SJ-01Z-00-DX1.CF7DF110-22A8-4071-9717-A71915407248.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8166874992a5a8cd803e1a03497d5d79ddb7d8e0c152f5890ba84b189ae08603 +size 179634688 diff --git a/features/TCGA-FD-A3SJ-01Z-00-DX1.CF7DF110-22A8-4071-9717-A71915407248.svs/metadata.json b/features/TCGA-FD-A3SJ-01Z-00-DX1.CF7DF110-22A8-4071-9717-A71915407248.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..97a35351007296488c138e33a85c5f75b6546eb4 --- /dev/null +++ b/features/TCGA-FD-A3SJ-01Z-00-DX1.CF7DF110-22A8-4071-9717-A71915407248.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31976, "total_number_of_tiles": 31976, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129274, 88920], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 22], "6": [64, 44], "7": [127, 87], "8": [253, 174], "9": [505, 348], "10": [1010, 695], "11": [2020, 1390], "12": [4040, 2779], "13": [8080, 5558], "14": [16160, 11115], "15": [32319, 22230], "16": [64637, 44460], "17": [129274, 88920]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "aabefe6d3d7556a5dc6bfda10bf0e760"} \ No newline at end of file diff --git a/features/TCGA-FD-A3SL-01Z-00-DX1.7B364C1F-3879-43C1-A3C7-B1CB03A7616B.svs/features.npy b/features/TCGA-FD-A3SL-01Z-00-DX1.7B364C1F-3879-43C1-A3C7-B1CB03A7616B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e3d4b39bcc1192d2913f1e64d5a2ff541e4af685 --- /dev/null +++ b/features/TCGA-FD-A3SL-01Z-00-DX1.7B364C1F-3879-43C1-A3C7-B1CB03A7616B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:df0c50e9357a3a637585f5b8b2b65a34c695f3cab8721ebf067899cfd9aed26c +size 206872192 diff --git a/features/TCGA-FD-A3SL-01Z-00-DX1.7B364C1F-3879-43C1-A3C7-B1CB03A7616B.svs/mask.npy b/features/TCGA-FD-A3SL-01Z-00-DX1.7B364C1F-3879-43C1-A3C7-B1CB03A7616B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b0c6fd84ebdc3495ad2a3131b761bf029b1985a5 --- /dev/null +++ b/features/TCGA-FD-A3SL-01Z-00-DX1.7B364C1F-3879-43C1-A3C7-B1CB03A7616B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e737812ed45e2bb66bbff57d7abf0bf8e334b6787f077d452fc23cc080998841 +size 182269728 diff --git a/features/TCGA-FD-A3SL-01Z-00-DX1.7B364C1F-3879-43C1-A3C7-B1CB03A7616B.svs/metadata.json b/features/TCGA-FD-A3SL-01Z-00-DX1.7B364C1F-3879-43C1-A3C7-B1CB03A7616B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0731014d594d5378b40c5fb9c9ba4807efe60e9e --- /dev/null +++ b/features/TCGA-FD-A3SL-01Z-00-DX1.7B364C1F-3879-43C1-A3C7-B1CB03A7616B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25216, "total_number_of_tiles": 25216, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [131189, 88903], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [33, 22], "7": [65, 44], "8": [129, 87], "9": [257, 174], "10": [513, 348], "11": [1025, 695], "12": [2050, 1390], "13": [4100, 2779], "14": [8200, 5557], "15": [16399, 11113], "16": [32798, 22226], "17": [65595, 44452], "18": [131189, 88903]}, "level_mpp_mapping": {"0": 65142.784, "1": 32571.392, "2": 16285.696, "3": 8142.848, "4": 4071.424, "5": 2035.712, "6": 1017.856, "7": 508.928, "8": 254.464, "9": 127.232, "10": 63.616, "11": 31.808, "12": 15.904, "13": 7.952, "14": 3.976, "15": 1.988, "16": 0.994, "17": 0.497, "18": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0c95d3c83f711e3581d049d12a1c9900b7c73b728a99f4499b84a1acf1d4558b"} \ No newline at end of file diff --git a/features/TCGA-FD-A3SM-01Z-00-DX1.D391C864-B5B5-4C4D-915F-FBD8BCACAD36.svs/features.npy b/features/TCGA-FD-A3SM-01Z-00-DX1.D391C864-B5B5-4C4D-915F-FBD8BCACAD36.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..28ba66d6d940fe62cb737d040ff6a91798ec75a3 --- /dev/null +++ b/features/TCGA-FD-A3SM-01Z-00-DX1.D391C864-B5B5-4C4D-915F-FBD8BCACAD36.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:afc65939ac211920f964a6f7df39089e4117948e57ec62639384c16e61e933dc +size 272717496 diff --git a/features/TCGA-FD-A3SM-01Z-00-DX1.D391C864-B5B5-4C4D-915F-FBD8BCACAD36.svs/mask.npy b/features/TCGA-FD-A3SM-01Z-00-DX1.D391C864-B5B5-4C4D-915F-FBD8BCACAD36.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b0917c87665262a807f91965312fa8375f550e33 --- /dev/null +++ b/features/TCGA-FD-A3SM-01Z-00-DX1.D391C864-B5B5-4C4D-915F-FBD8BCACAD36.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:88eb8ab65dd2aed71e8167a5b3a800bf9d08465aefad9a43d8cc996e19f5655c +size 180936048 diff --git a/features/TCGA-FD-A3SM-01Z-00-DX1.D391C864-B5B5-4C4D-915F-FBD8BCACAD36.svs/metadata.json b/features/TCGA-FD-A3SM-01Z-00-DX1.D391C864-B5B5-4C4D-915F-FBD8BCACAD36.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3a6bce3c1349cf72e21eb99dc1408434cdb44305 --- /dev/null +++ b/features/TCGA-FD-A3SM-01Z-00-DX1.D391C864-B5B5-4C4D-915F-FBD8BCACAD36.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 33242, "total_number_of_tiles": 33242, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [130231, 88909], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 22], "6": [64, 44], "7": [128, 87], "8": [255, 174], "9": [509, 348], "10": [1018, 695], "11": [2035, 1390], "12": [4070, 2779], "13": [8140, 5557], "14": [16279, 11114], "15": [32558, 22228], "16": [65116, 44455], "17": [130231, 88909]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "de684ed06deebfc5a54e80c68eee84c0b1324e88085bade193b065877c5bd511"} \ No newline at end of file diff --git a/features/TCGA-FD-A3SN-01Z-00-DX1.CB50ED59-FB7E-4892-AF72-6D297EC62466.svs/features.npy b/features/TCGA-FD-A3SN-01Z-00-DX1.CB50ED59-FB7E-4892-AF72-6D297EC62466.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e7136f11e806ca4aa03c2cf77e6afcc6f271f753 --- /dev/null +++ b/features/TCGA-FD-A3SN-01Z-00-DX1.CB50ED59-FB7E-4892-AF72-6D297EC62466.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8e2db00b9b4066df5a67b63c833bea2cc10442870925c8d786998c1e248c1833 +size 241739192 diff --git a/features/TCGA-FD-A3SN-01Z-00-DX1.CB50ED59-FB7E-4892-AF72-6D297EC62466.svs/mask.npy b/features/TCGA-FD-A3SN-01Z-00-DX1.CB50ED59-FB7E-4892-AF72-6D297EC62466.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d40ab81d0f2c6b4f4e96c0c98d61780e62a51c57 --- /dev/null +++ b/features/TCGA-FD-A3SN-01Z-00-DX1.CB50ED59-FB7E-4892-AF72-6D297EC62466.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0fc47f4d4304e981fee0fafa36d73b23b9ce303357525599886600c25cc56f51 +size 171715168 diff --git a/features/TCGA-FD-A3SN-01Z-00-DX1.CB50ED59-FB7E-4892-AF72-6D297EC62466.svs/metadata.json b/features/TCGA-FD-A3SN-01Z-00-DX1.CB50ED59-FB7E-4892-AF72-6D297EC62466.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6147eafcc0a2b9a77fed728fcd97dc80253e724b --- /dev/null +++ b/features/TCGA-FD-A3SN-01Z-00-DX1.CB50ED59-FB7E-4892-AF72-6D297EC62466.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29466, "total_number_of_tiles": 29466, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123528, 88951], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 22], "6": [61, 44], "7": [121, 87], "8": [242, 174], "9": [483, 348], "10": [966, 695], "11": [1931, 1390], "12": [3861, 2780], "13": [7721, 5560], "14": [15441, 11119], "15": [30882, 22238], "16": [61764, 44476], "17": [123528, 88951]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "47bd9f822c4b2c5d0d09895122fae7b1"} \ No newline at end of file diff --git a/features/TCGA-FD-A3SO-01Z-00-DX1.C3A855BF-976F-4E2B-9E39-3D1AEA1A67F6.svs/features.npy b/features/TCGA-FD-A3SO-01Z-00-DX1.C3A855BF-976F-4E2B-9E39-3D1AEA1A67F6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d067b76c9517f75059b64ce057c77fc5ee8e19d4 --- /dev/null +++ b/features/TCGA-FD-A3SO-01Z-00-DX1.C3A855BF-976F-4E2B-9E39-3D1AEA1A67F6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b7395e132551d10ba00c294b36666c2d3279c595fcab0ce5189e87ce8de22e2d +size 176985020 diff --git a/features/TCGA-FD-A3SO-01Z-00-DX1.C3A855BF-976F-4E2B-9E39-3D1AEA1A67F6.svs/mask.npy b/features/TCGA-FD-A3SO-01Z-00-DX1.C3A855BF-976F-4E2B-9E39-3D1AEA1A67F6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..23bc40b751dca8478e997371eb1583f23b22fab7 --- /dev/null +++ b/features/TCGA-FD-A3SO-01Z-00-DX1.C3A855BF-976F-4E2B-9E39-3D1AEA1A67F6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8ef7cf30fea7a1b5dd6af48e5b99708f2a866702a6223554e1c60e5684ba3d32 +size 165124784 diff --git a/features/TCGA-FD-A3SO-01Z-00-DX1.C3A855BF-976F-4E2B-9E39-3D1AEA1A67F6.svs/metadata.json b/features/TCGA-FD-A3SO-01Z-00-DX1.C3A855BF-976F-4E2B-9E39-3D1AEA1A67F6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e4d0cb8e321c4095354cca6c285f2e27f39e90b2 --- /dev/null +++ b/features/TCGA-FD-A3SO-01Z-00-DX1.C3A855BF-976F-4E2B-9E39-3D1AEA1A67F6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21573, "total_number_of_tiles": 21573, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [118740, 88978], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [29, 22], "6": [58, 44], "7": [116, 87], "8": [232, 174], "9": [464, 348], "10": [928, 696], "11": [1856, 1391], "12": [3711, 2781], "13": [7422, 5562], "14": [14843, 11123], "15": [29685, 22245], "16": [59370, 44489], "17": [118740, 88978]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8523d6fd26b9d1da1c1d8f1cf92f3a96"} \ No newline at end of file diff --git a/features/TCGA-FD-A3SP-01Z-00-DX1.05986238-A4B9-497D-9D00-8DB37B0040FE.svs/features.npy b/features/TCGA-FD-A3SP-01Z-00-DX1.05986238-A4B9-497D-9D00-8DB37B0040FE.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ce61f823517245780cd0992f677f42eff1c9aa55 --- /dev/null +++ b/features/TCGA-FD-A3SP-01Z-00-DX1.05986238-A4B9-497D-9D00-8DB37B0040FE.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c79d58dbf3944f7c925aa5a986568f036e29634eef24ce7dc6a858213b7d9198 +size 156360164 diff --git a/features/TCGA-FD-A3SP-01Z-00-DX1.05986238-A4B9-497D-9D00-8DB37B0040FE.svs/mask.npy b/features/TCGA-FD-A3SP-01Z-00-DX1.05986238-A4B9-497D-9D00-8DB37B0040FE.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6d0f1fa47d375d7225713bf8974db9e578760c2f --- /dev/null +++ b/features/TCGA-FD-A3SP-01Z-00-DX1.05986238-A4B9-497D-9D00-8DB37B0040FE.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:aac242f37e372595b254dae2c4f60ec8c61daad4a2a0dc2b188236aaaddb65e6 +size 148899324 diff --git a/features/TCGA-FD-A3SP-01Z-00-DX1.05986238-A4B9-497D-9D00-8DB37B0040FE.svs/metadata.json b/features/TCGA-FD-A3SP-01Z-00-DX1.05986238-A4B9-497D-9D00-8DB37B0040FE.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2aa6796848d7ff94d896d1d6bedcc8e6bf1b5a20 --- /dev/null +++ b/features/TCGA-FD-A3SP-01Z-00-DX1.05986238-A4B9-497D-9D00-8DB37B0040FE.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19059, "total_number_of_tiles": 19059, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [122571, 77734], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [30, 19], "6": [60, 38], "7": [120, 76], "8": [240, 152], "9": [479, 304], "10": [958, 608], "11": [1916, 1215], "12": [3831, 2430], "13": [7661, 4859], "14": [15322, 9717], "15": [30643, 19434], "16": [61286, 38867], "17": [122571, 77734]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "28e36605a80e0eaf2bfabbbe574c5f13"} \ No newline at end of file diff --git a/features/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.svs/features.npy b/features/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8e6bcfc41b573369b1e8fe58f3e9fde6336350b4 --- /dev/null +++ b/features/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2805daadda186f3a3202f0d1158d423c2d9a3460dd574ea72b64b0e73a65a142 +size 177780808 diff --git a/features/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.svs/mask.npy b/features/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d1e76a4507605917bbf09207bda5762acafdc069 --- /dev/null +++ b/features/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:90f4f1561927b4284684767c8b0e15863ce45b06d851aa29cd26006919d2008c +size 138593968 diff --git a/features/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.svs/metadata.json b/features/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b4903cabda59f45abfbbea673f7c20ceb26a958e --- /dev/null +++ b/features/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21670, "total_number_of_tiles": 21670, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [106292, 83439], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 21], "6": [52, 41], "7": [104, 82], "8": [208, 163], "9": [416, 326], "10": [831, 652], "11": [1661, 1304], "12": [3322, 2608], "13": [6644, 5215], "14": [13287, 10430], "15": [26573, 20860], "16": [53146, 41720], "17": [106292, 83439]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "05114c81a6f2082964d504f5a96e9205"} \ No newline at end of file diff --git a/features/TCGA-FD-A3SR-01Z-00-DX1.7E2FB51A-9562-4B3D-8431-6283342B4311.svs/features.npy b/features/TCGA-FD-A3SR-01Z-00-DX1.7E2FB51A-9562-4B3D-8431-6283342B4311.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6259aeb2c9d7a966c7924c7c27c1db85a35010a1 --- /dev/null +++ b/features/TCGA-FD-A3SR-01Z-00-DX1.7E2FB51A-9562-4B3D-8431-6283342B4311.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c6de0ad043353d294b850707df97c1be3512157f0447063268f68f2e9b58dbe1 +size 144833544 diff --git a/features/TCGA-FD-A3SR-01Z-00-DX1.7E2FB51A-9562-4B3D-8431-6283342B4311.svs/mask.npy b/features/TCGA-FD-A3SR-01Z-00-DX1.7E2FB51A-9562-4B3D-8431-6283342B4311.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5d2cae1cd888d4a82301435c25365182efe680a1 --- /dev/null +++ b/features/TCGA-FD-A3SR-01Z-00-DX1.7E2FB51A-9562-4B3D-8431-6283342B4311.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:47f2f372cb55825f470f92327c1cd8102d219ffae42540d3dfe2c371cca6e229 +size 146646496 diff --git a/features/TCGA-FD-A3SR-01Z-00-DX1.7E2FB51A-9562-4B3D-8431-6283342B4311.svs/metadata.json b/features/TCGA-FD-A3SR-01Z-00-DX1.7E2FB51A-9562-4B3D-8431-6283342B4311.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a38e463da2b1ff6c20997d0aa4e9ffc51397105c --- /dev/null +++ b/features/TCGA-FD-A3SR-01Z-00-DX1.7E2FB51A-9562-4B3D-8431-6283342B4311.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17654, "total_number_of_tiles": 17654, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [106292, 88285], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 22], "6": [52, 44], "7": [104, 87], "8": [208, 173], "9": [416, 345], "10": [831, 690], "11": [1661, 1380], "12": [3322, 2759], "13": [6644, 5518], "14": [13287, 11036], "15": [26573, 22072], "16": [53146, 44143], "17": [106292, 88285]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d72e65d74ed00be78fa06ae8ed22caa7"} \ No newline at end of file diff --git a/features/TCGA-FD-A3SS-01Z-00-DX1.FEEC4D8E-E87D-4742-B377-5DA2999D6997.svs/features.npy b/features/TCGA-FD-A3SS-01Z-00-DX1.FEEC4D8E-E87D-4742-B377-5DA2999D6997.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8458589f98ec8e5ff43f1f9f91109b4715d2d47d --- /dev/null +++ b/features/TCGA-FD-A3SS-01Z-00-DX1.FEEC4D8E-E87D-4742-B377-5DA2999D6997.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:31805201ac3144cd5b0ac897e69562df9645393dd1658856fbf98ad5e3d8b286 +size 207725408 diff --git a/features/TCGA-FD-A3SS-01Z-00-DX1.FEEC4D8E-E87D-4742-B377-5DA2999D6997.svs/mask.npy b/features/TCGA-FD-A3SS-01Z-00-DX1.FEEC4D8E-E87D-4742-B377-5DA2999D6997.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..210d64660edcaf18b90b77252c3b76624a84a0c7 --- /dev/null +++ b/features/TCGA-FD-A3SS-01Z-00-DX1.FEEC4D8E-E87D-4742-B377-5DA2999D6997.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a5047b53e3f296f3d992e507f2adea64b6340b575f84218b4a5ba7f1189f1b79 +size 115194064 diff --git a/features/TCGA-FD-A3SS-01Z-00-DX1.FEEC4D8E-E87D-4742-B377-5DA2999D6997.svs/metadata.json b/features/TCGA-FD-A3SS-01Z-00-DX1.FEEC4D8E-E87D-4742-B377-5DA2999D6997.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3d22f2c093e0d3718b983c476ea994815a666301 --- /dev/null +++ b/features/TCGA-FD-A3SS-01Z-00-DX1.FEEC4D8E-E87D-4742-B377-5DA2999D6997.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25320, "total_number_of_tiles": 25320, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [89055, 82775], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 11], "5": [22, 21], "6": [44, 41], "7": [87, 81], "8": [174, 162], "9": [348, 324], "10": [696, 647], "11": [1392, 1294], "12": [2783, 2587], "13": [5566, 5174], "14": [11132, 10347], "15": [22264, 20694], "16": [44528, 41388], "17": [89055, 82775]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "af9a0468c14176be1c0946c5f388a360"} \ No newline at end of file diff --git a/features/TCGA-FD-A43N-01Z-00-DX1.57422C5F-A3A1-4595-9E06-C05C7FF5944B.svs/features.npy b/features/TCGA-FD-A43N-01Z-00-DX1.57422C5F-A3A1-4595-9E06-C05C7FF5944B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..81d5deb1211fa2cd5a33ba406875ebb5b8e504fb --- /dev/null +++ b/features/TCGA-FD-A43N-01Z-00-DX1.57422C5F-A3A1-4595-9E06-C05C7FF5944B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:04bdd68f2f4fafc872f323ed167366858663619b785b8499f48d76cfa34731f7 +size 288050772 diff --git a/features/TCGA-FD-A43N-01Z-00-DX1.57422C5F-A3A1-4595-9E06-C05C7FF5944B.svs/mask.npy b/features/TCGA-FD-A43N-01Z-00-DX1.57422C5F-A3A1-4595-9E06-C05C7FF5944B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..977c306a2e366f5ac352ae20605d13136d3a636f --- /dev/null +++ b/features/TCGA-FD-A43N-01Z-00-DX1.57422C5F-A3A1-4595-9E06-C05C7FF5944B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2a9df418a0d3d06ada8d2da1d7830559442f10a22d905feb2b341e745d799081 +size 176264888 diff --git a/features/TCGA-FD-A43N-01Z-00-DX1.57422C5F-A3A1-4595-9E06-C05C7FF5944B.svs/metadata.json b/features/TCGA-FD-A43N-01Z-00-DX1.57422C5F-A3A1-4595-9E06-C05C7FF5944B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..637d25fb349ef94fe6794699cb2d9f37b4f8742f --- /dev/null +++ b/features/TCGA-FD-A43N-01Z-00-DX1.57422C5F-A3A1-4595-9E06-C05C7FF5944B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 35111, "total_number_of_tiles": 35111, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 92823], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 23], "6": [60, 46], "7": [119, 91], "8": [238, 182], "9": [475, 363], "10": [950, 726], "11": [1899, 1451], "12": [3798, 2901], "13": [7595, 5802], "14": [15189, 11603], "15": [30378, 23206], "16": [60756, 46412], "17": [121511, 92823]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8b6934becfe4f81324f85c0d2753a7d9"} \ No newline at end of file diff --git a/features/TCGA-FD-A43P-01Z-00-DX1.792612F7-802C-4A90-A2B5-A6A82FCDE92F.svs/features.npy b/features/TCGA-FD-A43P-01Z-00-DX1.792612F7-802C-4A90-A2B5-A6A82FCDE92F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b5bc4af916f536020181d885d40d4eb9017d7f26 --- /dev/null +++ b/features/TCGA-FD-A43P-01Z-00-DX1.792612F7-802C-4A90-A2B5-A6A82FCDE92F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:58dc7c6edda0535f0d6222993d95f0c3f48cbc6bbd46e0b59557aaf011757357 +size 255784440 diff --git a/features/TCGA-FD-A43P-01Z-00-DX1.792612F7-802C-4A90-A2B5-A6A82FCDE92F.svs/mask.npy b/features/TCGA-FD-A43P-01Z-00-DX1.792612F7-802C-4A90-A2B5-A6A82FCDE92F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d60521ae551a2f076713f448f6f14ead30b1b9a9 --- /dev/null +++ b/features/TCGA-FD-A43P-01Z-00-DX1.792612F7-802C-4A90-A2B5-A6A82FCDE92F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:41cfc6b1c65744b8682e2d8ebca1b2c24a363a8a6d33dd26bd8a3c7155f797cb +size 178833920 diff --git a/features/TCGA-FD-A43P-01Z-00-DX1.792612F7-802C-4A90-A2B5-A6A82FCDE92F.svs/metadata.json b/features/TCGA-FD-A43P-01Z-00-DX1.792612F7-802C-4A90-A2B5-A6A82FCDE92F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..97e644f6defc47ac008bdc88bcbde10d46cb3cf0 --- /dev/null +++ b/features/TCGA-FD-A43P-01Z-00-DX1.792612F7-802C-4A90-A2B5-A6A82FCDE92F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31178, "total_number_of_tiles": 31178, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 92662], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [61, 46], "7": [121, 91], "8": [242, 181], "9": [483, 362], "10": [965, 724], "11": [1930, 1448], "12": [3860, 2896], "13": [7719, 5792], "14": [15438, 11583], "15": [30876, 23166], "16": [61752, 46331], "17": [123503, 92662]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5e59841adc526553f839cee652c5e1ce"} \ No newline at end of file diff --git a/features/TCGA-FD-A43S-01Z-00-DX1.528CA6F1-B53B-4396-B776-9761B578DCDE.svs/features.npy b/features/TCGA-FD-A43S-01Z-00-DX1.528CA6F1-B53B-4396-B776-9761B578DCDE.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3e546fece1d7171a6b1851c8aca2817d3e0fa757 --- /dev/null +++ b/features/TCGA-FD-A43S-01Z-00-DX1.528CA6F1-B53B-4396-B776-9761B578DCDE.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1e7131b1ab6f90cb97ab16a7619284701c070e8107800ad049e5b68281fc07bf +size 240123004 diff --git a/features/TCGA-FD-A43S-01Z-00-DX1.528CA6F1-B53B-4396-B776-9761B578DCDE.svs/mask.npy b/features/TCGA-FD-A43S-01Z-00-DX1.528CA6F1-B53B-4396-B776-9761B578DCDE.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ca80935b9dcf3a2c55aed85c194a185865410f2a --- /dev/null +++ b/features/TCGA-FD-A43S-01Z-00-DX1.528CA6F1-B53B-4396-B776-9761B578DCDE.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5b7cf11cdb91a1000283bda7f0d213d4dd326bb0975342f649abfaea8857a769 +size 149523632 diff --git a/features/TCGA-FD-A43S-01Z-00-DX1.528CA6F1-B53B-4396-B776-9761B578DCDE.svs/metadata.json b/features/TCGA-FD-A43S-01Z-00-DX1.528CA6F1-B53B-4396-B776-9761B578DCDE.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5b809cbe95ac50e08262744d26a71aeeccd096e0 --- /dev/null +++ b/features/TCGA-FD-A43S-01Z-00-DX1.528CA6F1-B53B-4396-B776-9761B578DCDE.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29269, "total_number_of_tiles": 29269, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [103583, 92369], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [26, 23], "6": [51, 46], "7": [102, 91], "8": [203, 181], "9": [405, 361], "10": [810, 722], "11": [1619, 1444], "12": [3237, 2887], "13": [6474, 5774], "14": [12948, 11547], "15": [25896, 23093], "16": [51792, 46185], "17": [103583, 92369]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a236086af393d362e806dfe86d6a2fd7"} \ No newline at end of file diff --git a/features/TCGA-FD-A43U-01Z-00-DX1.003EC6EC-229E-4578-BF5B-1FB3EBF68845.svs/features.npy b/features/TCGA-FD-A43U-01Z-00-DX1.003EC6EC-229E-4578-BF5B-1FB3EBF68845.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e7abf144b9972d4528a19798af3f76cf6da11a1a --- /dev/null +++ b/features/TCGA-FD-A43U-01Z-00-DX1.003EC6EC-229E-4578-BF5B-1FB3EBF68845.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:81280656a3cf6971b88d86b9e6473fbc61ae4239e341463309608782350a67a1 +size 156918036 diff --git a/features/TCGA-FD-A43U-01Z-00-DX1.003EC6EC-229E-4578-BF5B-1FB3EBF68845.svs/mask.npy b/features/TCGA-FD-A43U-01Z-00-DX1.003EC6EC-229E-4578-BF5B-1FB3EBF68845.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c818d88e691eabf07003293191609577d02eacd7 --- /dev/null +++ b/features/TCGA-FD-A43U-01Z-00-DX1.003EC6EC-229E-4578-BF5B-1FB3EBF68845.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4807efe96f75567759c07e0ac7edf674cc6277f21bcdb30bb92edcb2fe159947 +size 158408064 diff --git a/features/TCGA-FD-A43U-01Z-00-DX1.003EC6EC-229E-4578-BF5B-1FB3EBF68845.svs/metadata.json b/features/TCGA-FD-A43U-01Z-00-DX1.003EC6EC-229E-4578-BF5B-1FB3EBF68845.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..67f21f5f74b2f5b595bc40fcbc0c0249dffcdb87 --- /dev/null +++ b/features/TCGA-FD-A43U-01Z-00-DX1.003EC6EC-229E-4578-BF5B-1FB3EBF68845.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19127, "total_number_of_tiles": 19127, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109559, 92519], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [54, 46], "7": [107, 91], "8": [214, 181], "9": [428, 362], "10": [856, 723], "11": [1712, 1446], "12": [3424, 2892], "13": [6848, 5783], "14": [13695, 11565], "15": [27390, 23130], "16": [54780, 46260], "17": [109559, 92519]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "162b9cdc54481aef353cd2a8c0e92719"} \ No newline at end of file diff --git a/features/TCGA-FD-A43X-01Z-00-DX1.CB2A73D9-F64C-4553-8D11-4C25CEF98C45.svs/features.npy b/features/TCGA-FD-A43X-01Z-00-DX1.CB2A73D9-F64C-4553-8D11-4C25CEF98C45.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..803ceb0282b915409cc33b81a53519dc275a7646 --- /dev/null +++ b/features/TCGA-FD-A43X-01Z-00-DX1.CB2A73D9-F64C-4553-8D11-4C25CEF98C45.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:273236fd360b0ff5f7106f4f25d54410a92832b2cbd9b12f35a569d4aba2b329 +size 274620824 diff --git a/features/TCGA-FD-A43X-01Z-00-DX1.CB2A73D9-F64C-4553-8D11-4C25CEF98C45.svs/mask.npy b/features/TCGA-FD-A43X-01Z-00-DX1.CB2A73D9-F64C-4553-8D11-4C25CEF98C45.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9936501c22ff76ebba2947a4aa0a2ba8594a04d6 --- /dev/null +++ b/features/TCGA-FD-A43X-01Z-00-DX1.CB2A73D9-F64C-4553-8D11-4C25CEF98C45.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:220c8932335ec7b24cabc38a097c406e0114b1a8d72a5ea5239fee3aeedc620d +size 178664908 diff --git a/features/TCGA-FD-A43X-01Z-00-DX1.CB2A73D9-F64C-4553-8D11-4C25CEF98C45.svs/metadata.json b/features/TCGA-FD-A43X-01Z-00-DX1.CB2A73D9-F64C-4553-8D11-4C25CEF98C45.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b8ae2418a2e0f09615a85fbb679cafd2a1f9a681 --- /dev/null +++ b/features/TCGA-FD-A43X-01Z-00-DX1.CB2A73D9-F64C-4553-8D11-4C25CEF98C45.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 33474, "total_number_of_tiles": 33474, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 94091], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 23], "6": [60, 46], "7": [119, 92], "8": [238, 184], "9": [475, 368], "10": [950, 736], "11": [1899, 1471], "12": [3798, 2941], "13": [7595, 5881], "14": [15189, 11762], "15": [30378, 23523], "16": [60756, 47046], "17": [121511, 94091]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8e63bc6e66ffd0bdf569c482ddcbf23a"} \ No newline at end of file diff --git a/features/TCGA-FD-A43Y-01Z-00-DX1.6516167F-A303-4524-98D6-E32CB521ED08.svs/features.npy b/features/TCGA-FD-A43Y-01Z-00-DX1.6516167F-A303-4524-98D6-E32CB521ED08.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..22e2458287237e30de99611674fa179f002c27f0 --- /dev/null +++ b/features/TCGA-FD-A43Y-01Z-00-DX1.6516167F-A303-4524-98D6-E32CB521ED08.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9eadd8469b138c6165eff39f513624767c59ab7797f0a57ec286b21ba70b00b0 +size 127162128 diff --git a/features/TCGA-FD-A43Y-01Z-00-DX1.6516167F-A303-4524-98D6-E32CB521ED08.svs/mask.npy b/features/TCGA-FD-A43Y-01Z-00-DX1.6516167F-A303-4524-98D6-E32CB521ED08.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b1693ddd1749c245513465a5aa792831929e5809 --- /dev/null +++ b/features/TCGA-FD-A43Y-01Z-00-DX1.6516167F-A303-4524-98D6-E32CB521ED08.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9a8fad5a805369cb9b8eea9b9e26603eafe6e6f2c696fc748f15735da756c7ba +size 137256896 diff --git a/features/TCGA-FD-A43Y-01Z-00-DX1.6516167F-A303-4524-98D6-E32CB521ED08.svs/metadata.json b/features/TCGA-FD-A43Y-01Z-00-DX1.6516167F-A303-4524-98D6-E32CB521ED08.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b80440d50542bf40bc699501fe7ae602cf29549a --- /dev/null +++ b/features/TCGA-FD-A43Y-01Z-00-DX1.6516167F-A303-4524-98D6-E32CB521ED08.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15500, "total_number_of_tiles": 15500, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115535, 76025], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [29, 19], "6": [57, 38], "7": [113, 75], "8": [226, 149], "9": [452, 297], "10": [903, 594], "11": [1806, 1188], "12": [3611, 2376], "13": [7221, 4752], "14": [14442, 9504], "15": [28884, 19007], "16": [57768, 38013], "17": [115535, 76025]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "45e2e4c636e85fb64f95ce2ae505374c"} \ No newline at end of file diff --git a/features/TCGA-FD-A5BR-01Z-00-DX1.53CA363B-8DA6-465A-9FEA-2D120B5787A8.svs/features.npy b/features/TCGA-FD-A5BR-01Z-00-DX1.53CA363B-8DA6-465A-9FEA-2D120B5787A8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..964a8e40efffb65b01c003566f8b185c0c6a2459 --- /dev/null +++ b/features/TCGA-FD-A5BR-01Z-00-DX1.53CA363B-8DA6-465A-9FEA-2D120B5787A8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1388caa2417d0903450fcecb916658c733a1e1dfb1e3ed4c91eab9bcb21d7cb6 +size 246472900 diff --git a/features/TCGA-FD-A5BR-01Z-00-DX1.53CA363B-8DA6-465A-9FEA-2D120B5787A8.svs/mask.npy b/features/TCGA-FD-A5BR-01Z-00-DX1.53CA363B-8DA6-465A-9FEA-2D120B5787A8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1eb3e4c623d9c884235ea415a4721ef66ac47f84 --- /dev/null +++ b/features/TCGA-FD-A5BR-01Z-00-DX1.53CA363B-8DA6-465A-9FEA-2D120B5787A8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:545a80d0b4185952ae426fac49cc56735b23202ecbe2bb5ffc25308468ee8e08 +size 179219840 diff --git a/features/TCGA-FD-A5BR-01Z-00-DX1.53CA363B-8DA6-465A-9FEA-2D120B5787A8.svs/metadata.json b/features/TCGA-FD-A5BR-01Z-00-DX1.53CA363B-8DA6-465A-9FEA-2D120B5787A8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b212e967851e67b32d9c83ae75cde131b4a59054 --- /dev/null +++ b/features/TCGA-FD-A5BR-01Z-00-DX1.53CA363B-8DA6-465A-9FEA-2D120B5787A8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 30043, "total_number_of_tiles": 30043, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 91390], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [62, 45], "7": [123, 90], "8": [246, 179], "9": [491, 357], "10": [981, 714], "11": [1961, 1428], "12": [3922, 2856], "13": [7844, 5712], "14": [15687, 11424], "15": [31374, 22848], "16": [62748, 45695], "17": [125495, 91390]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e10153695aba3e4e114813e4927e03cd"} \ No newline at end of file diff --git a/features/TCGA-FD-A5BS-01Z-00-DX1.A7155CEB-37C9-4AD2-B229-B76F18814585.svs/features.npy b/features/TCGA-FD-A5BS-01Z-00-DX1.A7155CEB-37C9-4AD2-B229-B76F18814585.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..fd86ee791f1f35328bf074cd08cdace4c9d707d8 --- /dev/null +++ b/features/TCGA-FD-A5BS-01Z-00-DX1.A7155CEB-37C9-4AD2-B229-B76F18814585.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a0ac6f7e5ed436b71d9e9c0213c6c12aeabb90be091c7c611e1d245d9afde345 +size 220490832 diff --git a/features/TCGA-FD-A5BS-01Z-00-DX1.A7155CEB-37C9-4AD2-B229-B76F18814585.svs/mask.npy b/features/TCGA-FD-A5BS-01Z-00-DX1.A7155CEB-37C9-4AD2-B229-B76F18814585.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a6c57c0f3fb2a93a7ef1a5e44d999dd57b8fa557 --- /dev/null +++ b/features/TCGA-FD-A5BS-01Z-00-DX1.A7155CEB-37C9-4AD2-B229-B76F18814585.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9d244977dd4390130bf030f58d94aaa40127bf8e2a239d5035fd9c215529c876 +size 186851312 diff --git a/features/TCGA-FD-A5BS-01Z-00-DX1.A7155CEB-37C9-4AD2-B229-B76F18814585.svs/metadata.json b/features/TCGA-FD-A5BS-01Z-00-DX1.A7155CEB-37C9-4AD2-B229-B76F18814585.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bc4bb9e5ca7e106f50c6bbad7b75f05f646283c0 --- /dev/null +++ b/features/TCGA-FD-A5BS-01Z-00-DX1.A7155CEB-37C9-4AD2-B229-B76F18814585.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26876, "total_number_of_tiles": 26876, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129479, 92338], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [32, 23], "6": [64, 46], "7": [127, 91], "8": [253, 181], "9": [506, 361], "10": [1012, 722], "11": [2024, 1443], "12": [4047, 2886], "13": [8093, 5772], "14": [16185, 11543], "15": [32370, 23085], "16": [64740, 46169], "17": [129479, 92338]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "71c770099b69053cf6e494386d4359ca"} \ No newline at end of file diff --git a/features/TCGA-FD-A5BT-01Z-00-DX1.2A4716E6-A5C0-4C69-82FD-E771ABB3B28D.svs/features.npy b/features/TCGA-FD-A5BT-01Z-00-DX1.2A4716E6-A5C0-4C69-82FD-E771ABB3B28D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d4259e5710136f5b0973a65b6cf1600aeb3d6674 --- /dev/null +++ b/features/TCGA-FD-A5BT-01Z-00-DX1.2A4716E6-A5C0-4C69-82FD-E771ABB3B28D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fe56f62dff48e61976de98ea16ed797b39f2d0cf1d378c1a11ca87bfdb4619ec +size 180414292 diff --git a/features/TCGA-FD-A5BT-01Z-00-DX1.2A4716E6-A5C0-4C69-82FD-E771ABB3B28D.svs/mask.npy b/features/TCGA-FD-A5BT-01Z-00-DX1.2A4716E6-A5C0-4C69-82FD-E771ABB3B28D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..dcdeea6b9e99c101291ac2fbb584fb01658c09df --- /dev/null +++ b/features/TCGA-FD-A5BT-01Z-00-DX1.2A4716E6-A5C0-4C69-82FD-E771ABB3B28D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c7be72bddff4a524306ab9c641b2e63b9adeec38c94b2a75c5250220b8c7f8e9 +size 149067504 diff --git a/features/TCGA-FD-A5BT-01Z-00-DX1.2A4716E6-A5C0-4C69-82FD-E771ABB3B28D.svs/metadata.json b/features/TCGA-FD-A5BT-01Z-00-DX1.2A4716E6-A5C0-4C69-82FD-E771ABB3B28D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b8c743e939b46fdddc0c45c32857f136136bf267 --- /dev/null +++ b/features/TCGA-FD-A5BT-01Z-00-DX1.2A4716E6-A5C0-4C69-82FD-E771ABB3B28D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21991, "total_number_of_tiles": 21991, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 76011], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [31, 19], "6": [62, 38], "7": [123, 75], "8": [246, 149], "9": [491, 297], "10": [981, 594], "11": [1961, 1188], "12": [3922, 2376], "13": [7844, 4751], "14": [15687, 9502], "15": [31374, 19003], "16": [62748, 38006], "17": [125495, 76011]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8ec3205391049d91fdd5290e252b4845"} \ No newline at end of file diff --git a/features/TCGA-FD-A5BU-01Z-00-DX1.94A8468C-59E7-4185-A877-CC271EA01C90.svs/features.npy b/features/TCGA-FD-A5BU-01Z-00-DX1.94A8468C-59E7-4185-A877-CC271EA01C90.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..741ba0b4411e4335c90f8009a2c9d6dcedfd7c44 --- /dev/null +++ b/features/TCGA-FD-A5BU-01Z-00-DX1.94A8468C-59E7-4185-A877-CC271EA01C90.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:83788f80c6020c2590eed76410c90c3853a9c9fa1768700b77764d6e666edfc2 +size 151864372 diff --git a/features/TCGA-FD-A5BU-01Z-00-DX1.94A8468C-59E7-4185-A877-CC271EA01C90.svs/mask.npy b/features/TCGA-FD-A5BU-01Z-00-DX1.94A8468C-59E7-4185-A877-CC271EA01C90.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7c7ffcd4a1bb92eba639e652505a4351182aa9f0 --- /dev/null +++ b/features/TCGA-FD-A5BU-01Z-00-DX1.94A8468C-59E7-4185-A877-CC271EA01C90.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f7db547de87adf8a8009b040b2c60f4d0f8212dd4efe279b2d0869d27ad3417a +size 177057056 diff --git a/features/TCGA-FD-A5BU-01Z-00-DX1.94A8468C-59E7-4185-A877-CC271EA01C90.svs/metadata.json b/features/TCGA-FD-A5BU-01Z-00-DX1.94A8468C-59E7-4185-A877-CC271EA01C90.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..67c6bdcc0aedd0253531ffee68fdb476acbb77e1 --- /dev/null +++ b/features/TCGA-FD-A5BU-01Z-00-DX1.94A8468C-59E7-4185-A877-CC271EA01C90.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18511, "total_number_of_tiles": 18511, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [143423, 79002], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [18, 10], "6": [36, 20], "7": [71, 39], "8": [141, 78], "9": [281, 155], "10": [561, 309], "11": [1121, 618], "12": [2241, 1235], "13": [4482, 2469], "14": [8964, 4938], "15": [17928, 9876], "16": [35856, 19751], "17": [71712, 39501], "18": [143423, 79002]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bc6d45495657c498b88cf511a79523c2a16bf3c53b942e059847fb55cef137d1"} \ No newline at end of file diff --git a/features/TCGA-FD-A5BV-01Z-00-DX1.FD47C060-5104-45AC-95F8-0C4C5924FE26.svs/features.npy b/features/TCGA-FD-A5BV-01Z-00-DX1.FD47C060-5104-45AC-95F8-0C4C5924FE26.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..98ec3f39b92e3b40d53c3f357ce2f347a342da8b --- /dev/null +++ b/features/TCGA-FD-A5BV-01Z-00-DX1.FD47C060-5104-45AC-95F8-0C4C5924FE26.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3f90162c8d17a5e3fc27b7cfa0aea8203b1c3530c1ff9b934c3fe93fb3be49f0 +size 219293048 diff --git a/features/TCGA-FD-A5BV-01Z-00-DX1.FD47C060-5104-45AC-95F8-0C4C5924FE26.svs/mask.npy b/features/TCGA-FD-A5BV-01Z-00-DX1.FD47C060-5104-45AC-95F8-0C4C5924FE26.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0b6ee955e120e54a8699ff825adcbd7bba02b24c --- /dev/null +++ b/features/TCGA-FD-A5BV-01Z-00-DX1.FD47C060-5104-45AC-95F8-0C4C5924FE26.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d97cbeee029fb7eb3bc3232c7e0246e8b8cec63a17a8f95643615a30cd588ed0 +size 171964008 diff --git a/features/TCGA-FD-A5BV-01Z-00-DX1.FD47C060-5104-45AC-95F8-0C4C5924FE26.svs/metadata.json b/features/TCGA-FD-A5BV-01Z-00-DX1.FD47C060-5104-45AC-95F8-0C4C5924FE26.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1869fe3e5d0a55fbcb7fa81d3231a736e400eb1e --- /dev/null +++ b/features/TCGA-FD-A5BV-01Z-00-DX1.FD47C060-5104-45AC-95F8-0C4C5924FE26.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26730, "total_number_of_tiles": 26730, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [145415, 75671], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [18, 10], "6": [36, 19], "7": [72, 37], "8": [143, 74], "9": [285, 148], "10": [569, 296], "11": [1137, 592], "12": [2273, 1183], "13": [4545, 2365], "14": [9089, 4730], "15": [18177, 9459], "16": [36354, 18918], "17": [72708, 37836], "18": [145415, 75671]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9f4e349f2fb94244e012d26b66e9987c8dcc85e569826dba6e74ddf8dd5442ff"} \ No newline at end of file diff --git a/features/TCGA-FD-A5BX-01Z-00-DX1.172B23F4-4651-4C93-93E1-D0E81331DCA7.svs/features.npy b/features/TCGA-FD-A5BX-01Z-00-DX1.172B23F4-4651-4C93-93E1-D0E81331DCA7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..bb64602713be1ad729e9a3da3e5270b60ca49166 --- /dev/null +++ b/features/TCGA-FD-A5BX-01Z-00-DX1.172B23F4-4651-4C93-93E1-D0E81331DCA7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:10927e6f8c199c451d533bb32a880b081566308ec84c3ecdc1becafc9b5d5994 +size 151339316 diff --git a/features/TCGA-FD-A5BX-01Z-00-DX1.172B23F4-4651-4C93-93E1-D0E81331DCA7.svs/mask.npy b/features/TCGA-FD-A5BX-01Z-00-DX1.172B23F4-4651-4C93-93E1-D0E81331DCA7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..040ff3fe4b4c987259dab1378a1d76f5988158b3 --- /dev/null +++ b/features/TCGA-FD-A5BX-01Z-00-DX1.172B23F4-4651-4C93-93E1-D0E81331DCA7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6af6fa4d20363f75508ddb8c61c57eeefd97812f67e09ece35bb0c9268a63a9a +size 134048264 diff --git a/features/TCGA-FD-A5BX-01Z-00-DX1.172B23F4-4651-4C93-93E1-D0E81331DCA7.svs/metadata.json b/features/TCGA-FD-A5BX-01Z-00-DX1.172B23F4-4651-4C93-93E1-D0E81331DCA7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c040e40d2bfc2019f016d5306149ca966bf7fa16 --- /dev/null +++ b/features/TCGA-FD-A5BX-01Z-00-DX1.172B23F4-4651-4C93-93E1-D0E81331DCA7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18447, "total_number_of_tiles": 18447, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113543, 75550], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [28, 19], "6": [56, 37], "7": [111, 74], "8": [222, 148], "9": [444, 296], "10": [888, 591], "11": [1775, 1181], "12": [3549, 2361], "13": [7097, 4722], "14": [14193, 9444], "15": [28386, 18888], "16": [56772, 37775], "17": [113543, 75550]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "38fe2bf972b201166d737079a6dfa6e8"} \ No newline at end of file diff --git a/features/TCGA-FD-A5BY-01Z-00-DX1.9DF7C69C-FABA-46DC-9954-A7120C65061F.svs/features.npy b/features/TCGA-FD-A5BY-01Z-00-DX1.9DF7C69C-FABA-46DC-9954-A7120C65061F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5a58a67b485583c43f778893a339a8acafdf46e1 --- /dev/null +++ b/features/TCGA-FD-A5BY-01Z-00-DX1.9DF7C69C-FABA-46DC-9954-A7120C65061F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b344a867752cf8c060e2aa6453862100d7406f2d7374cc613f4ae1c3073f3450 +size 148894524 diff --git a/features/TCGA-FD-A5BY-01Z-00-DX1.9DF7C69C-FABA-46DC-9954-A7120C65061F.svs/mask.npy b/features/TCGA-FD-A5BY-01Z-00-DX1.9DF7C69C-FABA-46DC-9954-A7120C65061F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f37f08c22edf0d02c6aa4b52d7f52ed37ff27a5f --- /dev/null +++ b/features/TCGA-FD-A5BY-01Z-00-DX1.9DF7C69C-FABA-46DC-9954-A7120C65061F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:88d7a199e49f6b57bfbf6b2f7e155f3354fe2b307e37a014d88df416852a87d0 +size 111554120 diff --git a/features/TCGA-FD-A5BY-01Z-00-DX1.9DF7C69C-FABA-46DC-9954-A7120C65061F.svs/metadata.json b/features/TCGA-FD-A5BY-01Z-00-DX1.9DF7C69C-FABA-46DC-9954-A7120C65061F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c0246d438b1ff6be6d46c1760755caae3f757cda --- /dev/null +++ b/features/TCGA-FD-A5BY-01Z-00-DX1.9DF7C69C-FABA-46DC-9954-A7120C65061F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18149, "total_number_of_tiles": 18149, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [87647, 81447], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 10], "5": [22, 20], "6": [43, 40], "7": [86, 80], "8": [172, 160], "9": [343, 319], "10": [685, 637], "11": [1370, 1273], "12": [2739, 2546], "13": [5478, 5091], "14": [10956, 10181], "15": [21912, 20362], "16": [43824, 40724], "17": [87647, 81447]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "14c7867396c72bbd529045b0142b07a2"} \ No newline at end of file diff --git a/features/TCGA-FD-A5BZ-01Z-00-DX1.344B1F8F-3B3A-4D42-894E-27C5AE265F42.svs/features.npy b/features/TCGA-FD-A5BZ-01Z-00-DX1.344B1F8F-3B3A-4D42-894E-27C5AE265F42.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b946a9a12e05c7dcb795ff9de38a972c4f7af11d --- /dev/null +++ b/features/TCGA-FD-A5BZ-01Z-00-DX1.344B1F8F-3B3A-4D42-894E-27C5AE265F42.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dfccf7e0b93a38c3cf1b068206444c8cc6beff5262096d22576195e9f7d8148c +size 199373736 diff --git a/features/TCGA-FD-A5BZ-01Z-00-DX1.344B1F8F-3B3A-4D42-894E-27C5AE265F42.svs/mask.npy b/features/TCGA-FD-A5BZ-01Z-00-DX1.344B1F8F-3B3A-4D42-894E-27C5AE265F42.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b0274806456edc6240e6a82005f22d4363df13f5 --- /dev/null +++ b/features/TCGA-FD-A5BZ-01Z-00-DX1.344B1F8F-3B3A-4D42-894E-27C5AE265F42.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e605abd6a5b44f61ec6be4347876992b770532996c1a3619dea779fddfe7d78d +size 164507828 diff --git a/features/TCGA-FD-A5BZ-01Z-00-DX1.344B1F8F-3B3A-4D42-894E-27C5AE265F42.svs/metadata.json b/features/TCGA-FD-A5BZ-01Z-00-DX1.344B1F8F-3B3A-4D42-894E-27C5AE265F42.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..20f6a472f6dbfc48ddef78af12361cf9db674acb --- /dev/null +++ b/features/TCGA-FD-A5BZ-01Z-00-DX1.344B1F8F-3B3A-4D42-894E-27C5AE265F42.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24302, "total_number_of_tiles": 24302, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 86640], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [30, 22], "6": [60, 43], "7": [119, 85], "8": [238, 170], "9": [475, 339], "10": [950, 677], "11": [1899, 1354], "12": [3798, 2708], "13": [7595, 5415], "14": [15189, 10830], "15": [30378, 21660], "16": [60756, 43320], "17": [121511, 86640]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f913f898a02a230744d6d403e73446c8"} \ No newline at end of file diff --git a/features/TCGA-FD-A5C0-01Z-00-DX1.D11E8348-04DE-4934-B063-2E3F3AD8D110.svs/features.npy b/features/TCGA-FD-A5C0-01Z-00-DX1.D11E8348-04DE-4934-B063-2E3F3AD8D110.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..49d4ac3c08c7f4d58f69752d95524effe2fb6154 --- /dev/null +++ b/features/TCGA-FD-A5C0-01Z-00-DX1.D11E8348-04DE-4934-B063-2E3F3AD8D110.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b71ace7ddb7314a3ced35d8201b392367548c36180ff36fedd3d77d3b20fc5bf +size 173301424 diff --git a/features/TCGA-FD-A5C0-01Z-00-DX1.D11E8348-04DE-4934-B063-2E3F3AD8D110.svs/mask.npy b/features/TCGA-FD-A5C0-01Z-00-DX1.D11E8348-04DE-4934-B063-2E3F3AD8D110.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..2aa9c5851feeec4b3bd3756b410a15dc4b273185 --- /dev/null +++ b/features/TCGA-FD-A5C0-01Z-00-DX1.D11E8348-04DE-4934-B063-2E3F3AD8D110.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d1ea360c460f05da89b901e6260dcc9a8ca77add2251156f10ba1b6e13935a99 +size 171469968 diff --git a/features/TCGA-FD-A5C0-01Z-00-DX1.D11E8348-04DE-4934-B063-2E3F3AD8D110.svs/metadata.json b/features/TCGA-FD-A5C0-01Z-00-DX1.D11E8348-04DE-4934-B063-2E3F3AD8D110.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..426a49c23dfc363d21bf0eb3b6a5fc6ab1e5a48a --- /dev/null +++ b/features/TCGA-FD-A5C0-01Z-00-DX1.D11E8348-04DE-4934-B063-2E3F3AD8D110.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21124, "total_number_of_tiles": 21124, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 87427], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 22], "6": [62, 43], "7": [123, 86], "8": [246, 171], "9": [491, 342], "10": [981, 684], "11": [1961, 1367], "12": [3922, 2733], "13": [7844, 5465], "14": [15687, 10929], "15": [31374, 21857], "16": [62748, 43714], "17": [125495, 87427]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f97613c63b076b20d2f1c8227f0ed6ae"} \ No newline at end of file diff --git a/features/TCGA-FD-A5C1-01Z-00-DX1.EAD87C49-A25C-4D37-AF27-E27F7016E065.svs/features.npy b/features/TCGA-FD-A5C1-01Z-00-DX1.EAD87C49-A25C-4D37-AF27-E27F7016E065.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..39e57f12cde2d174ae52d746e70a58abda892bbd --- /dev/null +++ b/features/TCGA-FD-A5C1-01Z-00-DX1.EAD87C49-A25C-4D37-AF27-E27F7016E065.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2364e08ffaed6551ff5a7bb9069085dde2008964bdfad176498b0c0c569eddba +size 167271484 diff --git a/features/TCGA-FD-A5C1-01Z-00-DX1.EAD87C49-A25C-4D37-AF27-E27F7016E065.svs/mask.npy b/features/TCGA-FD-A5C1-01Z-00-DX1.EAD87C49-A25C-4D37-AF27-E27F7016E065.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..80dfcc5db71a801138e7aaa18238e620dafb7f41 --- /dev/null +++ b/features/TCGA-FD-A5C1-01Z-00-DX1.EAD87C49-A25C-4D37-AF27-E27F7016E065.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7cd1061a18fc7645933b205a8d4dbdb43a6d761532b7f0f700072902cfbaf128 +size 202404088 diff --git a/features/TCGA-FD-A5C1-01Z-00-DX1.EAD87C49-A25C-4D37-AF27-E27F7016E065.svs/metadata.json b/features/TCGA-FD-A5C1-01Z-00-DX1.EAD87C49-A25C-4D37-AF27-E27F7016E065.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fe344fa5421d593455304d85679472458a8a6935 --- /dev/null +++ b/features/TCGA-FD-A5C1-01Z-00-DX1.EAD87C49-A25C-4D37-AF27-E27F7016E065.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20389, "total_number_of_tiles": 20389, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [137447, 94231], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [34, 24], "7": [68, 47], "8": [135, 93], "9": [269, 185], "10": [537, 369], "11": [1074, 737], "12": [2148, 1473], "13": [4296, 2945], "14": [8591, 5890], "15": [17181, 11779], "16": [34362, 23558], "17": [68724, 47116], "18": [137447, 94231]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4bfd3f87a94792b463f1ca2e26873a884060acfd627148fb45ae2421af8991e1"} \ No newline at end of file diff --git a/features/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.svs/features.npy b/features/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6ea0fba90aa4923045fa5df4272d7cef73db3a98 --- /dev/null +++ b/features/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b9cb5de4f7959b02a3f68919458889d603ee926afea41ca7d9764e0ff36d298f +size 154940872 diff --git a/features/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.svs/mask.npy b/features/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3333d01550069e1951d6910b394e0915ebf97635 --- /dev/null +++ b/features/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3081001a7b37489e1d7d4367f33220c0d026fd6549154a8aee1df4f57dc8978c +size 166481184 diff --git a/features/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.svs/metadata.json b/features/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f045d5d41fc0d704df615d82f376bd563fd656c2 --- /dev/null +++ b/features/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18886, "total_number_of_tiles": 18886, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 84891], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 21], "6": [62, 42], "7": [123, 83], "8": [246, 166], "9": [491, 332], "10": [981, 664], "11": [1961, 1327], "12": [3922, 2653], "13": [7844, 5306], "14": [15687, 10612], "15": [31374, 21223], "16": [62748, 42446], "17": [125495, 84891]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "06262f375e1e8f5db697da5b456ecaab"} \ No newline at end of file diff --git a/features/TCGA-FD-A62O-01Z-00-DX1.4DD5E512-EF71-498B-8C25-18F42D0E1F1F.svs/features.npy b/features/TCGA-FD-A62O-01Z-00-DX1.4DD5E512-EF71-498B-8C25-18F42D0E1F1F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..30d20e28424ef6db670b9150d2c1449247400f26 --- /dev/null +++ b/features/TCGA-FD-A62O-01Z-00-DX1.4DD5E512-EF71-498B-8C25-18F42D0E1F1F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0c26edfecfd3d616237bc04e37b0583f810d1eafa62ac08436ba81a4427a432a +size 192736700 diff --git a/features/TCGA-FD-A62O-01Z-00-DX1.4DD5E512-EF71-498B-8C25-18F42D0E1F1F.svs/mask.npy b/features/TCGA-FD-A62O-01Z-00-DX1.4DD5E512-EF71-498B-8C25-18F42D0E1F1F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7054b6808dd7d7a60687707bc285eaae2413f988 --- /dev/null +++ b/features/TCGA-FD-A62O-01Z-00-DX1.4DD5E512-EF71-498B-8C25-18F42D0E1F1F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d41ef460c0c5becfb225fbf5a93f2abef513438a4616bcdf902225df0ccd6248 +size 138045728 diff --git a/features/TCGA-FD-A62O-01Z-00-DX1.4DD5E512-EF71-498B-8C25-18F42D0E1F1F.svs/metadata.json b/features/TCGA-FD-A62O-01Z-00-DX1.4DD5E512-EF71-498B-8C25-18F42D0E1F1F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..eb15740ae4180b23db8253a10e379dc3ab3360eb --- /dev/null +++ b/features/TCGA-FD-A62O-01Z-00-DX1.4DD5E512-EF71-498B-8C25-18F42D0E1F1F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23493, "total_number_of_tiles": 23493, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111551, 79198], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [28, 20], "6": [55, 39], "7": [109, 78], "8": [218, 155], "9": [436, 310], "10": [872, 619], "11": [1743, 1238], "12": [3486, 2475], "13": [6972, 4950], "14": [13944, 9900], "15": [27888, 19800], "16": [55776, 39599], "17": [111551, 79198]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e0195e96d988f6fad9fbb2f8b5316e96"} \ No newline at end of file diff --git a/features/TCGA-FD-A62P-01Z-00-DX1.56B14555-896E-420A-AE8B-4E2D35D87871.svs/features.npy b/features/TCGA-FD-A62P-01Z-00-DX1.56B14555-896E-420A-AE8B-4E2D35D87871.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e0c69e06403dbcf809f13360e2a8885213d5f055 --- /dev/null +++ b/features/TCGA-FD-A62P-01Z-00-DX1.56B14555-896E-420A-AE8B-4E2D35D87871.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:560f0ca8ab331f8aaebe5b0ce72135243f455e8ef83afb700f30eaa1fed9d447 +size 262954736 diff --git a/features/TCGA-FD-A62P-01Z-00-DX1.56B14555-896E-420A-AE8B-4E2D35D87871.svs/mask.npy b/features/TCGA-FD-A62P-01Z-00-DX1.56B14555-896E-420A-AE8B-4E2D35D87871.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a5ca4146ce3f400b3b9b1b850bb753dc8209c367 --- /dev/null +++ b/features/TCGA-FD-A62P-01Z-00-DX1.56B14555-896E-420A-AE8B-4E2D35D87871.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7c9d8c67ca028ce3c48b2e0ce63f0879c4fd9c45d1ea56181fcf1cbf3142a92c +size 171176672 diff --git a/features/TCGA-FD-A62P-01Z-00-DX1.56B14555-896E-420A-AE8B-4E2D35D87871.svs/metadata.json b/features/TCGA-FD-A62P-01Z-00-DX1.56B14555-896E-420A-AE8B-4E2D35D87871.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..07e36e8846b62bb3c2fbf1246778314cdc2dcb99 --- /dev/null +++ b/features/TCGA-FD-A62P-01Z-00-DX1.56B14555-896E-420A-AE8B-4E2D35D87871.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32052, "total_number_of_tiles": 32052, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 88697], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 22], "6": [61, 44], "7": [121, 87], "8": [242, 174], "9": [483, 347], "10": [965, 693], "11": [1930, 1386], "12": [3860, 2772], "13": [7719, 5544], "14": [15438, 11088], "15": [30876, 22175], "16": [61752, 44349], "17": [123503, 88697]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9c240b9b4b0dff72b813b44bbc5e475b"} \ No newline at end of file diff --git a/features/TCGA-FD-A62S-01Z-00-DX1.B35DA29A-6F19-4663-9DB2-AB57DAFC84A7.svs/features.npy b/features/TCGA-FD-A62S-01Z-00-DX1.B35DA29A-6F19-4663-9DB2-AB57DAFC84A7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5444fde09ad9da6a9642cc102769ac578f129ee0 --- /dev/null +++ b/features/TCGA-FD-A62S-01Z-00-DX1.B35DA29A-6F19-4663-9DB2-AB57DAFC84A7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9e40136c8891b37a0ceb9b1033341927db094721fbab7bb73a729ada8505aaf2 +size 336257476 diff --git a/features/TCGA-FD-A62S-01Z-00-DX1.B35DA29A-6F19-4663-9DB2-AB57DAFC84A7.svs/mask.npy b/features/TCGA-FD-A62S-01Z-00-DX1.B35DA29A-6F19-4663-9DB2-AB57DAFC84A7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f7b262fd3dbbb3f867f37322f6695f97c1e1a00d --- /dev/null +++ b/features/TCGA-FD-A62S-01Z-00-DX1.B35DA29A-6F19-4663-9DB2-AB57DAFC84A7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cfb708021f39bb7d6ee51ab3c02ff6844f7dc7aa4595a6c0a3bc8789098954c6 +size 240487024 diff --git a/features/TCGA-FD-A62S-01Z-00-DX1.B35DA29A-6F19-4663-9DB2-AB57DAFC84A7.svs/metadata.json b/features/TCGA-FD-A62S-01Z-00-DX1.B35DA29A-6F19-4663-9DB2-AB57DAFC84A7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e760d6522f8e429230acf93b48a32a2e854933df --- /dev/null +++ b/features/TCGA-FD-A62S-01Z-00-DX1.B35DA29A-6F19-4663-9DB2-AB57DAFC84A7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 40987, "total_number_of_tiles": 40987, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [189239, 81326], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [12, 5], "5": [24, 10], "6": [47, 20], "7": [93, 40], "8": [185, 80], "9": [370, 159], "10": [740, 318], "11": [1479, 636], "12": [2957, 1271], "13": [5914, 2542], "14": [11828, 5083], "15": [23655, 10166], "16": [47310, 20332], "17": [94620, 40663], "18": [189239, 81326]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a166b19216f99399428d6c060a22ac56ed72e3cdf86ff619912f4eccd29484c1"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TA-01Z-00-DX1.FC156A8A-B71C-46A3-B83F-99DB0FC41FC8.svs/features.npy b/features/TCGA-FD-A6TA-01Z-00-DX1.FC156A8A-B71C-46A3-B83F-99DB0FC41FC8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0cb1c4a73af9eca820276e202533e9520f2e2f44 --- /dev/null +++ b/features/TCGA-FD-A6TA-01Z-00-DX1.FC156A8A-B71C-46A3-B83F-99DB0FC41FC8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b030689f5499ccab8e466126795e8b7bacc5b26539ec41592cd9ea9f3c83ea9 +size 221286620 diff --git a/features/TCGA-FD-A6TA-01Z-00-DX1.FC156A8A-B71C-46A3-B83F-99DB0FC41FC8.svs/mask.npy b/features/TCGA-FD-A6TA-01Z-00-DX1.FC156A8A-B71C-46A3-B83F-99DB0FC41FC8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..44135882f7f423c5cd31dd20cf1f051e1c356660 --- /dev/null +++ b/features/TCGA-FD-A6TA-01Z-00-DX1.FC156A8A-B71C-46A3-B83F-99DB0FC41FC8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2b1f9f6476d1604216b94850d824670960dcda85816cff185eb6b8ac19be2ae1 +size 190703580 diff --git a/features/TCGA-FD-A6TA-01Z-00-DX1.FC156A8A-B71C-46A3-B83F-99DB0FC41FC8.svs/metadata.json b/features/TCGA-FD-A6TA-01Z-00-DX1.FC156A8A-B71C-46A3-B83F-99DB0FC41FC8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..804c5b898e7d40cafb0e98ae5083fa43308a3954 --- /dev/null +++ b/features/TCGA-FD-A6TA-01Z-00-DX1.FC156A8A-B71C-46A3-B83F-99DB0FC41FC8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26973, "total_number_of_tiles": 26973, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129479, 94241], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [32, 24], "6": [64, 47], "7": [127, 93], "8": [253, 185], "9": [506, 369], "10": [1012, 737], "11": [2024, 1473], "12": [4047, 2946], "13": [8093, 5891], "14": [16185, 11781], "15": [32370, 23561], "16": [64740, 47121], "17": [129479, 94241]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0f632165c59edfb5f53181c69997aaed"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TB-01Z-00-DX1.CDCC077C-2DFE-4B04-A0D0-69E1CFE80AC5.svs/features.npy b/features/TCGA-FD-A6TB-01Z-00-DX1.CDCC077C-2DFE-4B04-A0D0-69E1CFE80AC5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..31ecd852c5f9e678965ed3898b795fb855208059 --- /dev/null +++ b/features/TCGA-FD-A6TB-01Z-00-DX1.CDCC077C-2DFE-4B04-A0D0-69E1CFE80AC5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a11350671bda605d0a6f142d294e2fc9060a5945cfef472939bb5d5815bca68f +size 126678092 diff --git a/features/TCGA-FD-A6TB-01Z-00-DX1.CDCC077C-2DFE-4B04-A0D0-69E1CFE80AC5.svs/mask.npy b/features/TCGA-FD-A6TB-01Z-00-DX1.CDCC077C-2DFE-4B04-A0D0-69E1CFE80AC5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c2663443b6e216f070ec2f00088095d44505d922 --- /dev/null +++ b/features/TCGA-FD-A6TB-01Z-00-DX1.CDCC077C-2DFE-4B04-A0D0-69E1CFE80AC5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:557c0991052a4fcd74bcc2917e02af3d36019b4b62f75683cb61eb77c614ef3c +size 168156800 diff --git a/features/TCGA-FD-A6TB-01Z-00-DX1.CDCC077C-2DFE-4B04-A0D0-69E1CFE80AC5.svs/metadata.json b/features/TCGA-FD-A6TB-01Z-00-DX1.CDCC077C-2DFE-4B04-A0D0-69E1CFE80AC5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..51b681f84e0a0915cab9857ff762fd2b693c03c5 --- /dev/null +++ b/features/TCGA-FD-A6TB-01Z-00-DX1.CDCC077C-2DFE-4B04-A0D0-69E1CFE80AC5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15441, "total_number_of_tiles": 15441, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [127487, 84412], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 21], "6": [63, 42], "7": [125, 83], "8": [249, 165], "9": [498, 330], "10": [996, 660], "11": [1992, 1319], "12": [3984, 2638], "13": [7968, 5276], "14": [15936, 10552], "15": [31872, 21103], "16": [63744, 42206], "17": [127487, 84412]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4d3241dc1821c2b646a734185a00b93d"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TC-01Z-00-DX1.AC96EA62-D56E-4565-88E0-EBAEB8087C4F.svs/features.npy b/features/TCGA-FD-A6TC-01Z-00-DX1.AC96EA62-D56E-4565-88E0-EBAEB8087C4F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4e180f1f8add9159b33b4d2efb4191c4902f4068 --- /dev/null +++ b/features/TCGA-FD-A6TC-01Z-00-DX1.AC96EA62-D56E-4565-88E0-EBAEB8087C4F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fced22bddea8b76b3972ffc640d7a0e1b64a7ef45b7c27d15720298717b7998c +size 216889276 diff --git a/features/TCGA-FD-A6TC-01Z-00-DX1.AC96EA62-D56E-4565-88E0-EBAEB8087C4F.svs/mask.npy b/features/TCGA-FD-A6TC-01Z-00-DX1.AC96EA62-D56E-4565-88E0-EBAEB8087C4F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7c161218249a7b4373eb7cb04bab924ae63884b8 --- /dev/null +++ b/features/TCGA-FD-A6TC-01Z-00-DX1.AC96EA62-D56E-4565-88E0-EBAEB8087C4F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d78db21fea6ed9399050ec36f0cf3341fcece57e5fa426a2f6642b28871d9239 +size 147312512 diff --git a/features/TCGA-FD-A6TC-01Z-00-DX1.AC96EA62-D56E-4565-88E0-EBAEB8087C4F.svs/metadata.json b/features/TCGA-FD-A6TC-01Z-00-DX1.AC96EA62-D56E-4565-88E0-EBAEB8087C4F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b7223f26f7de0f7780b86975dffd6b023a2ec0c0 --- /dev/null +++ b/features/TCGA-FD-A6TC-01Z-00-DX1.AC96EA62-D56E-4565-88E0-EBAEB8087C4F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26437, "total_number_of_tiles": 26437, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [127487, 73948], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [32, 19], "6": [63, 37], "7": [125, 73], "8": [249, 145], "9": [498, 289], "10": [996, 578], "11": [1992, 1156], "12": [3984, 2311], "13": [7968, 4622], "14": [15936, 9244], "15": [31872, 18487], "16": [63744, 36974], "17": [127487, 73948]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a0c7ae878ede360f46f158278b47279a"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TD-01Z-00-DX1.836B03BC-CD19-437D-A925-9862BB08AB1D.svs/features.npy b/features/TCGA-FD-A6TD-01Z-00-DX1.836B03BC-CD19-437D-A925-9862BB08AB1D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c66a901306d96b57b93bc0dfd55a70034738ffbe --- /dev/null +++ b/features/TCGA-FD-A6TD-01Z-00-DX1.836B03BC-CD19-437D-A925-9862BB08AB1D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:970b96efbdfd88c75a1751f7f2196190701c31b261d5767b4f4cb301c0f19880 +size 254709716 diff --git a/features/TCGA-FD-A6TD-01Z-00-DX1.836B03BC-CD19-437D-A925-9862BB08AB1D.svs/mask.npy b/features/TCGA-FD-A6TD-01Z-00-DX1.836B03BC-CD19-437D-A925-9862BB08AB1D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..102c60d5850addc57497fd040e1480cda74cac83 --- /dev/null +++ b/features/TCGA-FD-A6TD-01Z-00-DX1.836B03BC-CD19-437D-A925-9862BB08AB1D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e30ba0ccb461e41f4e11b655336491a6fb500672469279e7fe248a711aa9ee94 +size 224560728 diff --git a/features/TCGA-FD-A6TD-01Z-00-DX1.836B03BC-CD19-437D-A925-9862BB08AB1D.svs/metadata.json b/features/TCGA-FD-A6TD-01Z-00-DX1.836B03BC-CD19-437D-A925-9862BB08AB1D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..195e1ec9d2e30f878a70b705661f01f826b86158 --- /dev/null +++ b/features/TCGA-FD-A6TD-01Z-00-DX1.836B03BC-CD19-437D-A925-9862BB08AB1D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31047, "total_number_of_tiles": 31047, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [181271, 79276], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [12, 5], "5": [23, 10], "6": [45, 20], "7": [89, 39], "8": [178, 78], "9": [355, 155], "10": [709, 310], "11": [1417, 620], "12": [2833, 1239], "13": [5665, 2478], "14": [11330, 4955], "15": [22659, 9910], "16": [45318, 19819], "17": [90636, 39638], "18": [181271, 79276]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0583daf7e1ec9df9286a734f00b24489c9bd6e72f2ade6c59d44a7b4e4d9ac44"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TE-01Z-00-DX1.1CD738A0-1D6D-461B-9322-21F77CC3D167.svs/features.npy b/features/TCGA-FD-A6TE-01Z-00-DX1.1CD738A0-1D6D-461B-9322-21F77CC3D167.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..72b428b43a70cea8874872e4a7a4afdd8355510c --- /dev/null +++ b/features/TCGA-FD-A6TE-01Z-00-DX1.1CD738A0-1D6D-461B-9322-21F77CC3D167.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2196b993c12b455e59088ecd38f2540f1cd1e89af955c3f27421b92260521f31 +size 218177304 diff --git a/features/TCGA-FD-A6TE-01Z-00-DX1.1CD738A0-1D6D-461B-9322-21F77CC3D167.svs/mask.npy b/features/TCGA-FD-A6TE-01Z-00-DX1.1CD738A0-1D6D-461B-9322-21F77CC3D167.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6a0ea824d337203e5a1e443e7a284064baf8c0ea --- /dev/null +++ b/features/TCGA-FD-A6TE-01Z-00-DX1.1CD738A0-1D6D-461B-9322-21F77CC3D167.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:56541e6b2653ab336c9ce4a9da0077b5dae50f5ffb2c1d7edc013df1def55409 +size 184522384 diff --git a/features/TCGA-FD-A6TE-01Z-00-DX1.1CD738A0-1D6D-461B-9322-21F77CC3D167.svs/metadata.json b/features/TCGA-FD-A6TE-01Z-00-DX1.1CD738A0-1D6D-461B-9322-21F77CC3D167.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ef0363bdc8005ef1ab4d4fb60c0e6c5583b731e1 --- /dev/null +++ b/features/TCGA-FD-A6TE-01Z-00-DX1.1CD738A0-1D6D-461B-9322-21F77CC3D167.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26594, "total_number_of_tiles": 26594, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 94085], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [62, 46], "7": [123, 92], "8": [246, 184], "9": [491, 368], "10": [981, 736], "11": [1961, 1471], "12": [3922, 2941], "13": [7844, 5881], "14": [15687, 11761], "15": [31374, 23522], "16": [62748, 47043], "17": [125495, 94085]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0a5da497744f493c9aa8fbe1482aff5e"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TF-01Z-00-DX1.15B2C3E0-A0D7-4879-82B1-6C9AB09AF8E2.svs/features.npy b/features/TCGA-FD-A6TF-01Z-00-DX1.15B2C3E0-A0D7-4879-82B1-6C9AB09AF8E2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d688c168234e7250b808e787ddb2914473b5fff2 --- /dev/null +++ b/features/TCGA-FD-A6TF-01Z-00-DX1.15B2C3E0-A0D7-4879-82B1-6C9AB09AF8E2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8afee3353da28b8ce4164a3b98e0f6e7a4c26511a83be2453cfbb1e098bc6c95 +size 261699524 diff --git a/features/TCGA-FD-A6TF-01Z-00-DX1.15B2C3E0-A0D7-4879-82B1-6C9AB09AF8E2.svs/mask.npy b/features/TCGA-FD-A6TF-01Z-00-DX1.15B2C3E0-A0D7-4879-82B1-6C9AB09AF8E2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5c8aeb27dd03c9600e43f2be983884fcdf4cc532 --- /dev/null +++ b/features/TCGA-FD-A6TF-01Z-00-DX1.15B2C3E0-A0D7-4879-82B1-6C9AB09AF8E2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:56b011e4a9fc3b2cb74793678d8b087696e906f6a202cd48d448686efe446610 +size 187758080 diff --git a/features/TCGA-FD-A6TF-01Z-00-DX1.15B2C3E0-A0D7-4879-82B1-6C9AB09AF8E2.svs/metadata.json b/features/TCGA-FD-A6TF-01Z-00-DX1.15B2C3E0-A0D7-4879-82B1-6C9AB09AF8E2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4df12b9c5588d351ab1a118e45e56213a6f6152d --- /dev/null +++ b/features/TCGA-FD-A6TF-01Z-00-DX1.15B2C3E0-A0D7-4879-82B1-6C9AB09AF8E2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31899, "total_number_of_tiles": 31899, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [127487, 94243], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [32, 24], "6": [63, 47], "7": [125, 93], "8": [249, 185], "9": [498, 369], "10": [996, 737], "11": [1992, 1473], "12": [3984, 2946], "13": [7968, 5891], "14": [15936, 11781], "15": [31872, 23561], "16": [63744, 47122], "17": [127487, 94243]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "37dc79c154f2431866334cab7e370054"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TG-01Z-00-DX1.C49D520E-3589-4623-9BBE-9676BAC83A8F.svs/features.npy b/features/TCGA-FD-A6TG-01Z-00-DX1.C49D520E-3589-4623-9BBE-9676BAC83A8F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4627d186b0bc909e3b47f6f583da17a474f52ad7 --- /dev/null +++ b/features/TCGA-FD-A6TG-01Z-00-DX1.C49D520E-3589-4623-9BBE-9676BAC83A8F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:572bde53eba78a9d967cd875517fe020cf24ceb329ad8a14d857439aa417e7b8 +size 194410316 diff --git a/features/TCGA-FD-A6TG-01Z-00-DX1.C49D520E-3589-4623-9BBE-9676BAC83A8F.svs/mask.npy b/features/TCGA-FD-A6TG-01Z-00-DX1.C49D520E-3589-4623-9BBE-9676BAC83A8F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8de80d2f29a7670d6139fddafdf68b3ed3be4db1 --- /dev/null +++ b/features/TCGA-FD-A6TG-01Z-00-DX1.C49D520E-3589-4623-9BBE-9676BAC83A8F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f65e618373585e5e9e875de42e3a3660595e1c4ae52dc29456ee3faed2051edd +size 169034448 diff --git a/features/TCGA-FD-A6TG-01Z-00-DX1.C49D520E-3589-4623-9BBE-9676BAC83A8F.svs/metadata.json b/features/TCGA-FD-A6TG-01Z-00-DX1.C49D520E-3589-4623-9BBE-9676BAC83A8F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2b24053bb671808d5c8fcb07d4c7c3cfcece1122 --- /dev/null +++ b/features/TCGA-FD-A6TG-01Z-00-DX1.C49D520E-3589-4623-9BBE-9676BAC83A8F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23697, "total_number_of_tiles": 23697, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 89018], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [30, 22], "6": [60, 44], "7": [119, 87], "8": [238, 174], "9": [475, 348], "10": [950, 696], "11": [1899, 1391], "12": [3798, 2782], "13": [7595, 5564], "14": [15189, 11128], "15": [30378, 22255], "16": [60756, 44509], "17": [121511, 89018]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "df8c1c8c4abc097b9c18e437fb63be32"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TH-01Z-00-DX1.1791761E-876F-4AAB-A0B1-272A37A41E3A.svs/features.npy b/features/TCGA-FD-A6TH-01Z-00-DX1.1791761E-876F-4AAB-A0B1-272A37A41E3A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..062a8fbdb777efc5c8e572c9947d83b3fdd9485d --- /dev/null +++ b/features/TCGA-FD-A6TH-01Z-00-DX1.1791761E-876F-4AAB-A0B1-272A37A41E3A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5411748087d12da2db18f141b6eb02e82d274edf1f00adcdc3f63089e60615eb +size 208496584 diff --git a/features/TCGA-FD-A6TH-01Z-00-DX1.1791761E-876F-4AAB-A0B1-272A37A41E3A.svs/mask.npy b/features/TCGA-FD-A6TH-01Z-00-DX1.1791761E-876F-4AAB-A0B1-272A37A41E3A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f0100953f29d0b8b8e8d5e2555704a7ac4dd32b8 --- /dev/null +++ b/features/TCGA-FD-A6TH-01Z-00-DX1.1791761E-876F-4AAB-A0B1-272A37A41E3A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c6324e15a7a79648bdc769db9a49d4306300583ed392e8c6fa9661a8b9a4e820 +size 159885436 diff --git a/features/TCGA-FD-A6TH-01Z-00-DX1.1791761E-876F-4AAB-A0B1-272A37A41E3A.svs/metadata.json b/features/TCGA-FD-A6TH-01Z-00-DX1.1791761E-876F-4AAB-A0B1-272A37A41E3A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a849d50e935b4df7f02efa2574f3ccc2f3eb2cb1 --- /dev/null +++ b/features/TCGA-FD-A6TH-01Z-00-DX1.1791761E-876F-4AAB-A0B1-272A37A41E3A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25414, "total_number_of_tiles": 25414, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129479, 79019], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [32, 20], "6": [64, 39], "7": [127, 78], "8": [253, 155], "9": [506, 309], "10": [1012, 618], "11": [2024, 1235], "12": [4047, 2470], "13": [8093, 4939], "14": [16185, 9878], "15": [32370, 19755], "16": [64740, 39510], "17": [129479, 79019]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5fe714f86d9d8fdb805031949f111602"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TI-01Z-00-DX1.A451F82D-983B-4646-BFC6-E40A66F2B9C8.svs/features.npy b/features/TCGA-FD-A6TI-01Z-00-DX1.A451F82D-983B-4646-BFC6-E40A66F2B9C8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0522f142806455032948e3ff22f2a9ed36620c83 --- /dev/null +++ b/features/TCGA-FD-A6TI-01Z-00-DX1.A451F82D-983B-4646-BFC6-E40A66F2B9C8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:11fc0482dc52e2e17f356d6cc58f845a1b5583f9cd6d9aa7988cec179c1b8837 +size 161750192 diff --git a/features/TCGA-FD-A6TI-01Z-00-DX1.A451F82D-983B-4646-BFC6-E40A66F2B9C8.svs/mask.npy b/features/TCGA-FD-A6TI-01Z-00-DX1.A451F82D-983B-4646-BFC6-E40A66F2B9C8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3b41e8990fc22dbd5e8241849b22c687abc2d6a6 --- /dev/null +++ b/features/TCGA-FD-A6TI-01Z-00-DX1.A451F82D-983B-4646-BFC6-E40A66F2B9C8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9a6cdf15190bcda77d96c0a702292ccbd66c3877221e5b500da861d4aa0800c1 +size 134460128 diff --git a/features/TCGA-FD-A6TI-01Z-00-DX1.A451F82D-983B-4646-BFC6-E40A66F2B9C8.svs/metadata.json b/features/TCGA-FD-A6TI-01Z-00-DX1.A451F82D-983B-4646-BFC6-E40A66F2B9C8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5b8246c25346bc29ae82470f4a05f0c2088026dc --- /dev/null +++ b/features/TCGA-FD-A6TI-01Z-00-DX1.A451F82D-983B-4646-BFC6-E40A66F2B9C8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19716, "total_number_of_tiles": 19716, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107567, 79998], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 20], "6": [53, 40], "7": [106, 79], "8": [211, 157], "9": [421, 313], "10": [841, 625], "11": [1681, 1250], "12": [3362, 2500], "13": [6723, 5000], "14": [13446, 10000], "15": [26892, 20000], "16": [53784, 39999], "17": [107567, 79998]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "89f413745ab186925d9ff9f7667c6812"} \ No newline at end of file diff --git a/features/TCGA-FD-A6TK-01Z-00-DX1.B685DA87-72A6-4C38-8AA1-40B6E543383C.svs/features.npy b/features/TCGA-FD-A6TK-01Z-00-DX1.B685DA87-72A6-4C38-8AA1-40B6E543383C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..92ccbd3374cc3becb5b240882cf9e17171287d0c --- /dev/null +++ b/features/TCGA-FD-A6TK-01Z-00-DX1.B685DA87-72A6-4C38-8AA1-40B6E543383C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b0c0f3be5ea22e35d5d2dceb3a686909e9b6dc1c4b6e86d9dc40526f7d8437e6 +size 132740848 diff --git a/features/TCGA-FD-A6TK-01Z-00-DX1.B685DA87-72A6-4C38-8AA1-40B6E543383C.svs/mask.npy b/features/TCGA-FD-A6TK-01Z-00-DX1.B685DA87-72A6-4C38-8AA1-40B6E543383C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3fc470e0571c23b48b68189c6398e33dcdd8c05d --- /dev/null +++ b/features/TCGA-FD-A6TK-01Z-00-DX1.B685DA87-72A6-4C38-8AA1-40B6E543383C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:223b7358687dd5bfe96fa1fb2180331f49d02653fb11cf85abb4e92182731f49 +size 159561716 diff --git a/features/TCGA-FD-A6TK-01Z-00-DX1.B685DA87-72A6-4C38-8AA1-40B6E543383C.svs/metadata.json b/features/TCGA-FD-A6TK-01Z-00-DX1.B685DA87-72A6-4C38-8AA1-40B6E543383C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..77557e3e785810d732457ead854049b99001cf96 --- /dev/null +++ b/features/TCGA-FD-A6TK-01Z-00-DX1.B685DA87-72A6-4C38-8AA1-40B6E543383C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16180, "total_number_of_tiles": 16180, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129479, 78861], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [32, 20], "6": [64, 39], "7": [127, 78], "8": [253, 155], "9": [506, 309], "10": [1012, 617], "11": [2024, 1233], "12": [4047, 2465], "13": [8093, 4929], "14": [16185, 9858], "15": [32370, 19716], "16": [64740, 39431], "17": [129479, 78861]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "74097873968f0ad571fe80d3b151f6b9"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX1.B36BF723-0E71-4FA9-A915-823634B91EA9.svs/features.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX1.B36BF723-0E71-4FA9-A915-823634B91EA9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3eadfb37ad7e136339466220269983de03c003dd --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX1.B36BF723-0E71-4FA9-A915-823634B91EA9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a14864df51eb9d84884e9af53e4ae7d0c6df70f6ef0209a40fc35c6d15dd689c +size 138057040 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX1.B36BF723-0E71-4FA9-A915-823634B91EA9.svs/mask.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX1.B36BF723-0E71-4FA9-A915-823634B91EA9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4341b423432f6e5e2f979a9f5149ef7842dcdc4d --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX1.B36BF723-0E71-4FA9-A915-823634B91EA9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fbeb6da1a46fcb616544db74b98aa1937283f38ba1f12beeb96c48d48f0c8e57 +size 153146468 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX1.B36BF723-0E71-4FA9-A915-823634B91EA9.svs/metadata.json b/features/TCGA-FJ-A3Z7-01Z-00-DX1.B36BF723-0E71-4FA9-A915-823634B91EA9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1ba3dfbf5bd97e15ca864eb8348c34235f46486a --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX1.B36BF723-0E71-4FA9-A915-823634B91EA9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16828, "total_number_of_tiles": 16828, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109480, 89506], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 22], "6": [54, 44], "7": [107, 88], "8": [214, 175], "9": [428, 350], "10": [856, 700], "11": [1711, 1399], "12": [3422, 2798], "13": [6843, 5595], "14": [13685, 11189], "15": [27370, 22377], "16": [54740, 44753], "17": [109480, 89506]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3b82f000c906400d15dedc37032176a2"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX2.C4531060-32B7-4472-8B6D-3E4477810B9F.svs/features.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX2.C4531060-32B7-4472-8B6D-3E4477810B9F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3ec1af07324083c570044f047afdbea911a3fa7c --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX2.C4531060-32B7-4472-8B6D-3E4477810B9F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7ab3dc698b54a2491b8bc6d0ebc9e00f29e2c06663f29a804fc93a9e3e6a7ce6 +size 133044396 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX2.C4531060-32B7-4472-8B6D-3E4477810B9F.svs/mask.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX2.C4531060-32B7-4472-8B6D-3E4477810B9F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..43b8b1750b61b214092ece6b00db8f2125484b6e --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX2.C4531060-32B7-4472-8B6D-3E4477810B9F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8c77144cdae5632c9dc384e06eb4bc6203a466a862fb8a80aceb0ab9b945bbf2 +size 138229568 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX2.C4531060-32B7-4472-8B6D-3E4477810B9F.svs/metadata.json b/features/TCGA-FJ-A3Z7-01Z-00-DX2.C4531060-32B7-4472-8B6D-3E4477810B9F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..08e9d10aaea5fd5d7a71041f78e7c970e4cd3ebd --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX2.C4531060-32B7-4472-8B6D-3E4477810B9F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16217, "total_number_of_tiles": 16217, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105672, 83710], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 21], "6": [52, 41], "7": [104, 82], "8": [207, 164], "9": [413, 327], "10": [826, 654], "11": [1652, 1308], "12": [3303, 2616], "13": [6605, 5232], "14": [13209, 10464], "15": [26418, 20928], "16": [52836, 41855], "17": [105672, 83710]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "fb2903797191f9f045d59573a22e9797"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX3.6709359F-68F9-4B02-B793-359B83F26372.svs/features.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX3.6709359F-68F9-4B02-B793-359B83F26372.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1b78447ae271a60f1d3a7a20e8c4768ec3b32686 --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX3.6709359F-68F9-4B02-B793-359B83F26372.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8c880f03d815473b0d6b0926b2a5f95f0c00c3d3c3a89abbc5988c304bd9b346 +size 83943456 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX3.6709359F-68F9-4B02-B793-359B83F26372.svs/mask.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX3.6709359F-68F9-4B02-B793-359B83F26372.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..aeeb51ad4c49783b213d39a8d1ed1131744f1705 --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX3.6709359F-68F9-4B02-B793-359B83F26372.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:aa6a565b4840ddcd0572b931152f5c6adf69880ac3922a1425dccfcd9ce19a91 +size 180837272 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX3.6709359F-68F9-4B02-B793-359B83F26372.svs/metadata.json b/features/TCGA-FJ-A3Z7-01Z-00-DX3.6709359F-68F9-4B02-B793-359B83F26372.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..399bbbdedaf499c723cad4a75c289e511c93e761 --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX3.6709359F-68F9-4B02-B793-359B83F26372.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10232, "total_number_of_tiles": 10232, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [132328, 87445], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [33, 22], "7": [65, 43], "8": [130, 86], "9": [259, 171], "10": [517, 342], "11": [1034, 684], "12": [2068, 1367], "13": [4136, 2733], "14": [8271, 5466], "15": [16541, 10931], "16": [33082, 21862], "17": [66164, 43723], "18": [132328, 87445]}, "level_mpp_mapping": {"0": 64382.5664, "1": 32191.2832, "2": 16095.6416, "3": 8047.8208, "4": 4023.9104, "5": 2011.9552, "6": 1005.9776, "7": 502.9888, "8": 251.4944, "9": 125.7472, "10": 62.8736, "11": 31.4368, "12": 15.7184, "13": 7.8592, "14": 3.9296, "15": 1.9648, "16": 0.9824, "17": 0.4912, "18": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "dfd58babc57f42e0b35cae693e16a0f3810eddf9e0651a2426afaa4d78933922"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX4.7DDE20DA-894A-4751-A7C0-D5740CB30DD9.svs/features.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX4.7DDE20DA-894A-4751-A7C0-D5740CB30DD9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cde173e140542c23f0b941519509b4f4d936c067 --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX4.7DDE20DA-894A-4751-A7C0-D5740CB30DD9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2be97a1e0ad91f7ebfac10fe435b205027fa34e4820242939f01616e1399ea78 +size 189963748 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX4.7DDE20DA-894A-4751-A7C0-D5740CB30DD9.svs/mask.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX4.7DDE20DA-894A-4751-A7C0-D5740CB30DD9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..541e3ec2f33aa665bdce7dc7f00627b291e0788d --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX4.7DDE20DA-894A-4751-A7C0-D5740CB30DD9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ca154b47c9ab6da2153ae0d9ed468dd10d3ac807f2e4cc03ab81441a26ea1fe5 +size 142414448 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX4.7DDE20DA-894A-4751-A7C0-D5740CB30DD9.svs/metadata.json b/features/TCGA-FJ-A3Z7-01Z-00-DX4.7DDE20DA-894A-4751-A7C0-D5740CB30DD9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..10ebfec0d6b8ba68ae2a60a0653faaefe127c7b0 --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX4.7DDE20DA-894A-4751-A7C0-D5740CB30DD9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23155, "total_number_of_tiles": 23155, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107576, 84710], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 21], "6": [53, 42], "7": [106, 83], "8": [211, 166], "9": [421, 331], "10": [841, 662], "11": [1681, 1324], "12": [3362, 2648], "13": [6724, 5295], "14": [13447, 10589], "15": [26894, 21178], "16": [53788, 42355], "17": [107576, 84710]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "69ea1e2128bde96393e30966e6e80443"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX5.B0ABE3C5-94EC-4650-9698-0D4C57291267.svs/features.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX5.B0ABE3C5-94EC-4650-9698-0D4C57291267.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1e9f53b2cea1eacf296d399c973226adc73ed684 --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX5.B0ABE3C5-94EC-4650-9698-0D4C57291267.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1ad2aea0f462029bc1fbb1b208dc2fa2ab4714b421f8c9851c18767f51f94536 +size 111385836 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX5.B0ABE3C5-94EC-4650-9698-0D4C57291267.svs/mask.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX5.B0ABE3C5-94EC-4650-9698-0D4C57291267.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..41e178565de7d81460d0c2721e4c7658013f5dac --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX5.B0ABE3C5-94EC-4650-9698-0D4C57291267.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1f50007fc839e9014b541156442b0ac1eddcb040067a2d5cd524a34262164363 +size 117796128 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX5.B0ABE3C5-94EC-4650-9698-0D4C57291267.svs/metadata.json b/features/TCGA-FJ-A3Z7-01Z-00-DX5.B0ABE3C5-94EC-4650-9698-0D4C57291267.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9f4d159a0970156c398669256a1b9f574fdd090a --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX5.B0ABE3C5-94EC-4650-9698-0D4C57291267.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13577, "total_number_of_tiles": 13577, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [96152, 78391], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [24, 20], "6": [47, 39], "7": [94, 77], "8": [188, 154], "9": [376, 307], "10": [752, 613], "11": [1503, 1225], "12": [3005, 2450], "13": [6010, 4900], "14": [12019, 9799], "15": [24038, 19598], "16": [48076, 39196], "17": [96152, 78391]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "58f91786c4f9a34c277cfaf57830fab4"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX6.28B723F7-1035-4DC2-8DB1-87F08166A9FA.svs/features.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX6.28B723F7-1035-4DC2-8DB1-87F08166A9FA.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ab7e62ab84f147007b4c1162f82548f74a3d23b7 --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX6.28B723F7-1035-4DC2-8DB1-87F08166A9FA.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4c5ceaf3e1064bd4872ba26547affe849c5db3ca6cb4ee33a437cc01135aa54b +size 183236468 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX6.28B723F7-1035-4DC2-8DB1-87F08166A9FA.svs/mask.npy b/features/TCGA-FJ-A3Z7-01Z-00-DX6.28B723F7-1035-4DC2-8DB1-87F08166A9FA.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..77326c1d5aef7cf75dfea7134aa2f8ce0baf851f --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX6.28B723F7-1035-4DC2-8DB1-87F08166A9FA.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e2bb5623f6e6d279c1ccede6c1d0551802b0187017849de0c177861f74d16dec +size 166258532 diff --git a/features/TCGA-FJ-A3Z7-01Z-00-DX6.28B723F7-1035-4DC2-8DB1-87F08166A9FA.svs/metadata.json b/features/TCGA-FJ-A3Z7-01Z-00-DX6.28B723F7-1035-4DC2-8DB1-87F08166A9FA.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..78c05162622baa898e09d334282c0e7c86363e47 --- /dev/null +++ b/features/TCGA-FJ-A3Z7-01Z-00-DX6.28B723F7-1035-4DC2-8DB1-87F08166A9FA.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22335, "total_number_of_tiles": 22335, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [117096, 90858], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 23], "6": [58, 45], "7": [115, 89], "8": [229, 178], "9": [458, 355], "10": [915, 710], "11": [1830, 1420], "12": [3660, 2840], "13": [7319, 5679], "14": [14637, 11358], "15": [29274, 22715], "16": [58548, 45429], "17": [117096, 90858]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "63ca86df953b5e933d7bc43665deee51"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3Z9-01Z-00-DX1.012EC33E-2BEF-4EDB-81D5-6EAC32D90C87.svs/features.npy b/features/TCGA-FJ-A3Z9-01Z-00-DX1.012EC33E-2BEF-4EDB-81D5-6EAC32D90C87.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ff13e84d4c0b2f2c0c135181bd65344f40617acb --- /dev/null +++ b/features/TCGA-FJ-A3Z9-01Z-00-DX1.012EC33E-2BEF-4EDB-81D5-6EAC32D90C87.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1583457dae30a88c5db8758601ee81a2018e9e56c9467f1c36454b70fc0fe7dc +size 212368872 diff --git a/features/TCGA-FJ-A3Z9-01Z-00-DX1.012EC33E-2BEF-4EDB-81D5-6EAC32D90C87.svs/mask.npy b/features/TCGA-FJ-A3Z9-01Z-00-DX1.012EC33E-2BEF-4EDB-81D5-6EAC32D90C87.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c426baf87e673694ee6e84790ca1031d6f61876a --- /dev/null +++ b/features/TCGA-FJ-A3Z9-01Z-00-DX1.012EC33E-2BEF-4EDB-81D5-6EAC32D90C87.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a8c8a9df71d8ce06e4b8b9bd759d7225561312b9c16853a9f86b07df28e5e25e +size 171777104 diff --git a/features/TCGA-FJ-A3Z9-01Z-00-DX1.012EC33E-2BEF-4EDB-81D5-6EAC32D90C87.svs/metadata.json b/features/TCGA-FJ-A3Z9-01Z-00-DX1.012EC33E-2BEF-4EDB-81D5-6EAC32D90C87.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..36111224ca209ec7d76660b952b6a83a2d498c14 --- /dev/null +++ b/features/TCGA-FJ-A3Z9-01Z-00-DX1.012EC33E-2BEF-4EDB-81D5-6EAC32D90C87.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25886, "total_number_of_tiles": 25886, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [116144, 94651], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 24], "6": [57, 47], "7": [114, 93], "8": [227, 185], "9": [454, 370], "10": [908, 740], "11": [1815, 1479], "12": [3630, 2958], "13": [7259, 5916], "14": [14518, 11832], "15": [29036, 23663], "16": [58072, 47326], "17": [116144, 94651]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "10a0525ffccc3080745c5c0f2ebc5499"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3ZE-01Z-00-DX1.CD478617-4D80-4F36-8908-8480738367C6.svs/features.npy b/features/TCGA-FJ-A3ZE-01Z-00-DX1.CD478617-4D80-4F36-8908-8480738367C6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..50c4b813afd4e8a0be1ab113c2fecbe26689bc05 --- /dev/null +++ b/features/TCGA-FJ-A3ZE-01Z-00-DX1.CD478617-4D80-4F36-8908-8480738367C6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:857ea84a18fd2816f6c2f9ffcfc0f2eee8b58d14501da5aae205508c4e05dac4 +size 190406764 diff --git a/features/TCGA-FJ-A3ZE-01Z-00-DX1.CD478617-4D80-4F36-8908-8480738367C6.svs/mask.npy b/features/TCGA-FJ-A3ZE-01Z-00-DX1.CD478617-4D80-4F36-8908-8480738367C6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..29707232aad99e0c5e8d365805625302a3c11b74 --- /dev/null +++ b/features/TCGA-FJ-A3ZE-01Z-00-DX1.CD478617-4D80-4F36-8908-8480738367C6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f493c2285745f7f9a9c14e710c4893ffa6ed4fca89b414c68b189381a5d4c4d0 +size 195188688 diff --git a/features/TCGA-FJ-A3ZE-01Z-00-DX1.CD478617-4D80-4F36-8908-8480738367C6.svs/metadata.json b/features/TCGA-FJ-A3ZE-01Z-00-DX1.CD478617-4D80-4F36-8908-8480738367C6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..97b8eaa0b1ad2e46debe541689ec4a5c0ed3cf2f --- /dev/null +++ b/features/TCGA-FJ-A3ZE-01Z-00-DX1.CD478617-4D80-4F36-8908-8480738367C6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23209, "total_number_of_tiles": 23209, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [133280, 93725], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [33, 23], "7": [66, 46], "8": [131, 92], "9": [261, 184], "10": [521, 367], "11": [1042, 733], "12": [2083, 1465], "13": [4165, 2929], "14": [8330, 5858], "15": [16660, 11716], "16": [33320, 23432], "17": [66640, 46863], "18": [133280, 93725]}, "level_mpp_mapping": {"0": 64382.5664, "1": 32191.2832, "2": 16095.6416, "3": 8047.8208, "4": 4023.9104, "5": 2011.9552, "6": 1005.9776, "7": 502.9888, "8": 251.4944, "9": 125.7472, "10": 62.8736, "11": 31.4368, "12": 15.7184, "13": 7.8592, "14": 3.9296, "15": 1.9648, "16": 0.9824, "17": 0.4912, "18": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "dc087ed5379cb5ac7a34fed9026120bec90350c00152f9c1736ed1387dbfc09b"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3ZE-01Z-00-DX2.147C2363-55A3-4C02-BAF5-4F1256E30542.svs/features.npy b/features/TCGA-FJ-A3ZE-01Z-00-DX2.147C2363-55A3-4C02-BAF5-4F1256E30542.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a46a35b8f63df958fed0535f7b6c791c2de52d44 --- /dev/null +++ b/features/TCGA-FJ-A3ZE-01Z-00-DX2.147C2363-55A3-4C02-BAF5-4F1256E30542.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8bfd0b28b7b379061282f2f3537af3de19c189b74905ee7085b61a96f0563920 +size 207495696 diff --git a/features/TCGA-FJ-A3ZE-01Z-00-DX2.147C2363-55A3-4C02-BAF5-4F1256E30542.svs/mask.npy b/features/TCGA-FJ-A3ZE-01Z-00-DX2.147C2363-55A3-4C02-BAF5-4F1256E30542.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..fed1b63dbc2aa11049a77829e94f80e6af3d99d0 --- /dev/null +++ b/features/TCGA-FJ-A3ZE-01Z-00-DX2.147C2363-55A3-4C02-BAF5-4F1256E30542.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:87a285d6f864d72627835214743518caa659a0c3cb7096b6df34908cda05eea5 +size 202922760 diff --git a/features/TCGA-FJ-A3ZE-01Z-00-DX2.147C2363-55A3-4C02-BAF5-4F1256E30542.svs/metadata.json b/features/TCGA-FJ-A3ZE-01Z-00-DX2.147C2363-55A3-4C02-BAF5-4F1256E30542.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2872c0a13733b1e877cdeb052bfb7778309e9104 --- /dev/null +++ b/features/TCGA-FJ-A3ZE-01Z-00-DX2.147C2363-55A3-4C02-BAF5-4F1256E30542.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25292, "total_number_of_tiles": 25292, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [136136, 95387], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [34, 24], "7": [67, 47], "8": [133, 94], "9": [266, 187], "10": [532, 373], "11": [1064, 746], "12": [2128, 1491], "13": [4255, 2981], "14": [8509, 5962], "15": [17017, 11924], "16": [34034, 23847], "17": [68068, 47694], "18": [136136, 95387]}, "level_mpp_mapping": {"0": 64382.5664, "1": 32191.2832, "2": 16095.6416, "3": 8047.8208, "4": 4023.9104, "5": 2011.9552, "6": 1005.9776, "7": 502.9888, "8": 251.4944, "9": 125.7472, "10": 62.8736, "11": 31.4368, "12": 15.7184, "13": 7.8592, "14": 3.9296, "15": 1.9648, "16": 0.9824, "17": 0.4912, "18": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "fbc8e22b22e56aa76fc903cb992bf31e3244d703574937e6aff0e44fc7463343"} \ No newline at end of file diff --git a/features/TCGA-FJ-A3ZF-01Z-00-DX1.1B5E03AA-51A0-4E2B-A2B3-9652B1FA1D55.svs/features.npy b/features/TCGA-FJ-A3ZF-01Z-00-DX1.1B5E03AA-51A0-4E2B-A2B3-9652B1FA1D55.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..47c42a8e3776692847ad67fc03f6c940190d5a52 --- /dev/null +++ b/features/TCGA-FJ-A3ZF-01Z-00-DX1.1B5E03AA-51A0-4E2B-A2B3-9652B1FA1D55.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:84d98707509866449682434d44f899b205b441266cdaabaabf72a798db757051 +size 82212412 diff --git a/features/TCGA-FJ-A3ZF-01Z-00-DX1.1B5E03AA-51A0-4E2B-A2B3-9652B1FA1D55.svs/mask.npy b/features/TCGA-FJ-A3ZF-01Z-00-DX1.1B5E03AA-51A0-4E2B-A2B3-9652B1FA1D55.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..254a32b7c30ee42fb6f747693971401d17dd9d4b --- /dev/null +++ b/features/TCGA-FJ-A3ZF-01Z-00-DX1.1B5E03AA-51A0-4E2B-A2B3-9652B1FA1D55.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:88536429d439b8969c2a5bd70525d7052644f2116b88bb3a27a16bc2a3690937 +size 97292024 diff --git a/features/TCGA-FJ-A3ZF-01Z-00-DX1.1B5E03AA-51A0-4E2B-A2B3-9652B1FA1D55.svs/metadata.json b/features/TCGA-FJ-A3ZF-01Z-00-DX1.1B5E03AA-51A0-4E2B-A2B3-9652B1FA1D55.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..482e82017170921e4e4f3b434e88b1fea0d5a15d --- /dev/null +++ b/features/TCGA-FJ-A3ZF-01Z-00-DX1.1B5E03AA-51A0-4E2B-A2B3-9652B1FA1D55.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10021, "total_number_of_tiles": 10021, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [75208, 82772], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 6], "4": [10, 11], "5": [19, 21], "6": [37, 41], "7": [74, 81], "8": [147, 162], "9": [294, 324], "10": [588, 647], "11": [1176, 1294], "12": [2351, 2587], "13": [4701, 5174], "14": [9401, 10347], "15": [18802, 20693], "16": [37604, 41386], "17": [75208, 82772]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "421994689c5b68c6b28371cc665b229931e6c8d4aa800db6850eba9acca332aa"} \ No newline at end of file diff --git a/features/TCGA-FJ-A871-01Z-00-DX1.72748A33-5021-4AC6-AEF4-9BDA17233AB3.svs/features.npy b/features/TCGA-FJ-A871-01Z-00-DX1.72748A33-5021-4AC6-AEF4-9BDA17233AB3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6f348f0cf8bfde215f785d4f3439ca3871d5e80e --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX1.72748A33-5021-4AC6-AEF4-9BDA17233AB3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b8bcb28f6103621c5b126c425e28ca66f5e7e13d39d86f189c70539934976d1b +size 84468512 diff --git a/features/TCGA-FJ-A871-01Z-00-DX1.72748A33-5021-4AC6-AEF4-9BDA17233AB3.svs/mask.npy b/features/TCGA-FJ-A871-01Z-00-DX1.72748A33-5021-4AC6-AEF4-9BDA17233AB3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1b67f82a1f09bef2f5d3565741aea4d8694ed57c --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX1.72748A33-5021-4AC6-AEF4-9BDA17233AB3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:705ccc1abbb16d83f27ff73ded4ee1726d0d5aad41c316f88d6921fb1ed3baa4 +size 161494592 diff --git a/features/TCGA-FJ-A871-01Z-00-DX1.72748A33-5021-4AC6-AEF4-9BDA17233AB3.svs/metadata.json b/features/TCGA-FJ-A871-01Z-00-DX1.72748A33-5021-4AC6-AEF4-9BDA17233AB3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d880303f483909ba6b15bdb87f38d00248521c55 --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX1.72748A33-5021-4AC6-AEF4-9BDA17233AB3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10296, "total_number_of_tiles": 10296, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [117528, 87929], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [29, 22], "6": [58, 43], "7": [115, 86], "8": [230, 172], "9": [460, 344], "10": [919, 687], "11": [1837, 1374], "12": [3673, 2748], "13": [7346, 5496], "14": [14691, 10992], "15": [29382, 21983], "16": [58764, 43965], "17": [117528, 87929]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "511ea8808c93c84e97a671a9b68a24ed7b187d844e7f3ada6f3147365bf82ccf"} \ No newline at end of file diff --git a/features/TCGA-FJ-A871-01Z-00-DX2.B09F27BF-6786-4CC7-8471-5A73E048A813.svs/features.npy b/features/TCGA-FJ-A871-01Z-00-DX2.B09F27BF-6786-4CC7-8471-5A73E048A813.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..eb613575a9fd4489de6cb7e9af18cdbcd39ae2e1 --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX2.B09F27BF-6786-4CC7-8471-5A73E048A813.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5bb2619231b8a80dbcfa1f195f7754e782260eadea6d1bb70f9365afcbaea42a +size 85740132 diff --git a/features/TCGA-FJ-A871-01Z-00-DX2.B09F27BF-6786-4CC7-8471-5A73E048A813.svs/mask.npy b/features/TCGA-FJ-A871-01Z-00-DX2.B09F27BF-6786-4CC7-8471-5A73E048A813.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..cf768176334e824f0d766f5af24e944cfd8ac33b --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX2.B09F27BF-6786-4CC7-8471-5A73E048A813.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e659cde43f59337e77cbd99eca9ce7cf2943791c74160e506e9994f563e49375 +size 166262720 diff --git a/features/TCGA-FJ-A871-01Z-00-DX2.B09F27BF-6786-4CC7-8471-5A73E048A813.svs/metadata.json b/features/TCGA-FJ-A871-01Z-00-DX2.B09F27BF-6786-4CC7-8471-5A73E048A813.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fd424d17a34af7321689412d0d476679a416a404 --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX2.B09F27BF-6786-4CC7-8471-5A73E048A813.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10451, "total_number_of_tiles": 10451, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129480, 82164], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 21], "6": [64, 41], "7": [127, 81], "8": [253, 161], "9": [506, 321], "10": [1012, 642], "11": [2024, 1284], "12": [4047, 2568], "13": [8093, 5136], "14": [16185, 10271], "15": [32370, 20541], "16": [64740, 41082], "17": [129480, 82164]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2ce820b0df0a95dce4161d17f359011c"} \ No newline at end of file diff --git a/features/TCGA-FJ-A871-01Z-00-DX3.23DB58B1-62E3-4B74-AF08-198BD843FA22.svs/features.npy b/features/TCGA-FJ-A871-01Z-00-DX3.23DB58B1-62E3-4B74-AF08-198BD843FA22.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..62a1a39b38d8dacde837ced31252802156018ca4 --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX3.23DB58B1-62E3-4B74-AF08-198BD843FA22.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:77d38dde5b110c041951c10ffa48e6be90e480d29408a33411060169cac36313 +size 90096456 diff --git a/features/TCGA-FJ-A871-01Z-00-DX3.23DB58B1-62E3-4B74-AF08-198BD843FA22.svs/mask.npy b/features/TCGA-FJ-A871-01Z-00-DX3.23DB58B1-62E3-4B74-AF08-198BD843FA22.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..bc25ca9f5301e3b3c67b1724f3d9d13da8b7ca9b --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX3.23DB58B1-62E3-4B74-AF08-198BD843FA22.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d11bfa45484228f8503578d64b31838f4d87f5d0d44dbef9c0f970100093db2f +size 153577352 diff --git a/features/TCGA-FJ-A871-01Z-00-DX3.23DB58B1-62E3-4B74-AF08-198BD843FA22.svs/metadata.json b/features/TCGA-FJ-A871-01Z-00-DX3.23DB58B1-62E3-4B74-AF08-198BD843FA22.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..445ce781d35a43ee8e1348841b17317dd4815836 --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX3.23DB58B1-62E3-4B74-AF08-198BD843FA22.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10982, "total_number_of_tiles": 10982, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123504, 79580], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [31, 20], "6": [61, 39], "7": [121, 78], "8": [242, 156], "9": [483, 311], "10": [965, 622], "11": [1930, 1244], "12": [3860, 2487], "13": [7719, 4974], "14": [15438, 9948], "15": [30876, 19895], "16": [61752, 39790], "17": [123504, 79580]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b48e5ac715f80f21025bbe78939596a5"} \ No newline at end of file diff --git a/features/TCGA-FJ-A871-01Z-00-DX4.5917B34B-0752-40A9-B749-FB4B5514229B.svs/features.npy b/features/TCGA-FJ-A871-01Z-00-DX4.5917B34B-0752-40A9-B749-FB4B5514229B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4c101ba38579e779f8e9670b1cb05f3f10f403c1 --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX4.5917B34B-0752-40A9-B749-FB4B5514229B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:094be162211cfbdbd4a2e927d2ac3e978b10947ef2adaee3159dac53b0174a86 +size 84788468 diff --git a/features/TCGA-FJ-A871-01Z-00-DX4.5917B34B-0752-40A9-B749-FB4B5514229B.svs/mask.npy b/features/TCGA-FJ-A871-01Z-00-DX4.5917B34B-0752-40A9-B749-FB4B5514229B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f455b813b5cffc329ec07cd40be75dffc4edbf5a --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX4.5917B34B-0752-40A9-B749-FB4B5514229B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e06e6e5d6ba4145915d240b6ae38282a569d4f42b52c55f0176721fd34cc2f34 +size 166910160 diff --git a/features/TCGA-FJ-A871-01Z-00-DX4.5917B34B-0752-40A9-B749-FB4B5514229B.svs/metadata.json b/features/TCGA-FJ-A871-01Z-00-DX4.5917B34B-0752-40A9-B749-FB4B5514229B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9d23948e736531efe5095644aa6015c205f648f2 --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX4.5917B34B-0752-40A9-B749-FB4B5514229B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10335, "total_number_of_tiles": 10335, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129480, 82489], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 21], "6": [64, 41], "7": [127, 81], "8": [253, 162], "9": [506, 323], "10": [1012, 645], "11": [2024, 1289], "12": [4047, 2578], "13": [8093, 5156], "14": [16185, 10312], "15": [32370, 20623], "16": [64740, 41245], "17": [129480, 82489]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "89965e0301809bf0048bad135042ef67ba70f9f0f37559ade2d75d50c1fce834"} \ No newline at end of file diff --git a/features/TCGA-FJ-A871-01Z-00-DX5.8F79D0A8-5DE6-4159-AA77-61DACB21E867.svs/features.npy b/features/TCGA-FJ-A871-01Z-00-DX5.8F79D0A8-5DE6-4159-AA77-61DACB21E867.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a4f4ff0f4a935ed5cd6d6f769b8e0592b9aaa68b --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX5.8F79D0A8-5DE6-4159-AA77-61DACB21E867.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f27f3a5dd6e2b8c6e097b608ac25481e3bd2e21bcbb71f580dc437c4edd7f3c5 +size 88275168 diff --git a/features/TCGA-FJ-A871-01Z-00-DX5.8F79D0A8-5DE6-4159-AA77-61DACB21E867.svs/mask.npy b/features/TCGA-FJ-A871-01Z-00-DX5.8F79D0A8-5DE6-4159-AA77-61DACB21E867.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..827fdaca26c77a1cc71368d7e92b08986b7bee65 --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX5.8F79D0A8-5DE6-4159-AA77-61DACB21E867.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8c7e71225b6ae86b7cd5b9f6f57701a8660440715eb7a5564ea84dab869d3c8c +size 198016128 diff --git a/features/TCGA-FJ-A871-01Z-00-DX5.8F79D0A8-5DE6-4159-AA77-61DACB21E867.svs/metadata.json b/features/TCGA-FJ-A871-01Z-00-DX5.8F79D0A8-5DE6-4159-AA77-61DACB21E867.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c8f0fd81802eb2444f79fce9417eb8fc34da4996 --- /dev/null +++ b/features/TCGA-FJ-A871-01Z-00-DX5.8F79D0A8-5DE6-4159-AA77-61DACB21E867.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10760, "total_number_of_tiles": 10760, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [141432, 89585], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 11], "6": [35, 22], "7": [70, 44], "8": [139, 88], "9": [277, 175], "10": [553, 350], "11": [1105, 700], "12": [2210, 1400], "13": [4420, 2800], "14": [8840, 5600], "15": [17679, 11199], "16": [35358, 22397], "17": [70716, 44793], "18": [141432, 89585]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1d22039c198836ae2031095f7b90d8cdb2e60aafc33233b4d952a2ecd8585e7c"} \ No newline at end of file diff --git a/features/TCGA-FT-A3EE-01Z-00-DX1.1CA5BFA3-F6F7-45DE-83EC-F328AC4EBE80.svs/features.npy b/features/TCGA-FT-A3EE-01Z-00-DX1.1CA5BFA3-F6F7-45DE-83EC-F328AC4EBE80.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c7d4733169c5475c5580efd67bdefba2a3fa2eca --- /dev/null +++ b/features/TCGA-FT-A3EE-01Z-00-DX1.1CA5BFA3-F6F7-45DE-83EC-F328AC4EBE80.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1da62ad382872c06f00de3cfdb9fb430a6325763baf9176025c1a826ae449ede +size 348473232 diff --git a/features/TCGA-FT-A3EE-01Z-00-DX1.1CA5BFA3-F6F7-45DE-83EC-F328AC4EBE80.svs/mask.npy b/features/TCGA-FT-A3EE-01Z-00-DX1.1CA5BFA3-F6F7-45DE-83EC-F328AC4EBE80.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4a5fb90ef1dbf1bb965710cdf838ec381810c65d --- /dev/null +++ b/features/TCGA-FT-A3EE-01Z-00-DX1.1CA5BFA3-F6F7-45DE-83EC-F328AC4EBE80.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c17b0fd77b313b366ccf957cec09982b9063102244d83cdeb9371f05df9f9386 +size 234173088 diff --git a/features/TCGA-FT-A3EE-01Z-00-DX1.1CA5BFA3-F6F7-45DE-83EC-F328AC4EBE80.svs/metadata.json b/features/TCGA-FT-A3EE-01Z-00-DX1.1CA5BFA3-F6F7-45DE-83EC-F328AC4EBE80.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b5d7bf4036d3550b012685cae82c1e920de6cbad --- /dev/null +++ b/features/TCGA-FT-A3EE-01Z-00-DX1.1CA5BFA3-F6F7-45DE-83EC-F328AC4EBE80.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 42476, "total_number_of_tiles": 42476, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [186592, 80315], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [12, 5], "5": [23, 10], "6": [46, 20], "7": [92, 40], "8": [183, 79], "9": [365, 157], "10": [729, 314], "11": [1458, 628], "12": [2916, 1255], "13": [5831, 2510], "14": [11662, 5020], "15": [23324, 10040], "16": [46648, 20079], "17": [93296, 40158], "18": [186592, 80315]}, "level_mpp_mapping": {"0": 64697.1392, "1": 32348.5696, "2": 16174.2848, "3": 8087.1424, "4": 4043.5712, "5": 2021.7856, "6": 1010.8928, "7": 505.4464, "8": 252.7232, "9": 126.3616, "10": 63.1808, "11": 31.5904, "12": 15.7952, "13": 7.8976, "14": 3.9488, "15": 1.9744, "16": 0.9872, "17": 0.4936, "18": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4ce509290efc6fd9a931fc6fc94abd3027d36d02e5332e2e6db6d25022602087"} \ No newline at end of file diff --git a/features/TCGA-FT-A61P-01Z-00-DX1.39960BA6-ECC6-4EE0-B3ED-F3991E3742F6.svs/features.npy b/features/TCGA-FT-A61P-01Z-00-DX1.39960BA6-ECC6-4EE0-B3ED-F3991E3742F6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f0a27d8244b39db486a6472cda93fa6cca1f9209 --- /dev/null +++ b/features/TCGA-FT-A61P-01Z-00-DX1.39960BA6-ECC6-4EE0-B3ED-F3991E3742F6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c2cbe53d4aee6440d340591ddf7fa24e4f92011a0c7b4e3427fe82e0ee36eda8 +size 126694500 diff --git a/features/TCGA-FT-A61P-01Z-00-DX1.39960BA6-ECC6-4EE0-B3ED-F3991E3742F6.svs/mask.npy b/features/TCGA-FT-A61P-01Z-00-DX1.39960BA6-ECC6-4EE0-B3ED-F3991E3742F6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e8bbdb8b9c06261df39f6e0da4e86b4c018bb2a1 --- /dev/null +++ b/features/TCGA-FT-A61P-01Z-00-DX1.39960BA6-ECC6-4EE0-B3ED-F3991E3742F6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:abbaa4e6735a7ecb68caf72ab5af5f9ae02d233182a31c82ecbe7ecc142e29e2 +size 135281792 diff --git a/features/TCGA-FT-A61P-01Z-00-DX1.39960BA6-ECC6-4EE0-B3ED-F3991E3742F6.svs/metadata.json b/features/TCGA-FT-A61P-01Z-00-DX1.39960BA6-ECC6-4EE0-B3ED-F3991E3742F6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e58135b82af92f96ea4b7c45fa1ba9edbc5c0169 --- /dev/null +++ b/features/TCGA-FT-A61P-01Z-00-DX1.39960BA6-ECC6-4EE0-B3ED-F3991E3742F6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15443, "total_number_of_tiles": 15443, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [104377, 82940], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 21], "6": [51, 41], "7": [102, 81], "8": [204, 162], "9": [408, 324], "10": [816, 648], "11": [1631, 1296], "12": [3262, 2592], "13": [6524, 5184], "14": [13048, 10368], "15": [26095, 20735], "16": [52189, 41470], "17": [104377, 82940]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "034d61f28036fe8946640ed0eefa240c"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EC-01Z-00-DX1.44DA27E7-C499-46A1-A871-DBA4E5BCAA6A.svs/features.npy b/features/TCGA-G2-A2EC-01Z-00-DX1.44DA27E7-C499-46A1-A871-DBA4E5BCAA6A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d1ee75f332b96c17211ec6667c45303f88bc696d --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX1.44DA27E7-C499-46A1-A871-DBA4E5BCAA6A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bbc5224da0dd7e04850738c10aa25dc3185a8c362512e8a7d33ae4c885591069 +size 196978168 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX1.44DA27E7-C499-46A1-A871-DBA4E5BCAA6A.svs/mask.npy b/features/TCGA-G2-A2EC-01Z-00-DX1.44DA27E7-C499-46A1-A871-DBA4E5BCAA6A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a007a0f91b251677211a100ce2e01bd5700bb8de --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX1.44DA27E7-C499-46A1-A871-DBA4E5BCAA6A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dc8fd7e4f670bb7d92c9b9b12c908884019c8da6b2f618c6bbee74e8f2dba2e5 +size 213798464 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX1.44DA27E7-C499-46A1-A871-DBA4E5BCAA6A.svs/metadata.json b/features/TCGA-G2-A2EC-01Z-00-DX1.44DA27E7-C499-46A1-A871-DBA4E5BCAA6A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..aa848e5cc5d1be2c25c8484886983fa65da4f765 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX1.44DA27E7-C499-46A1-A871-DBA4E5BCAA6A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24010, "total_number_of_tiles": 24010, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [145655, 93933], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [36, 23], "7": [72, 46], "8": [143, 92], "9": [285, 184], "10": [569, 367], "11": [1138, 734], "12": [2276, 1468], "13": [4552, 2936], "14": [9104, 5871], "15": [18207, 11742], "16": [36414, 23484], "17": [72828, 46967], "18": [145655, 93933]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "351056138d60eb25a4c5759c32564cee9fc2c68a7d27f7a50b22ff728ac622de"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EC-01Z-00-DX2.42C4093A-A313-41E6-B2FD-B7928F9B32F9.svs/features.npy b/features/TCGA-G2-A2EC-01Z-00-DX2.42C4093A-A313-41E6-B2FD-B7928F9B32F9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3ec7087c0e8a0ce9c8f294e208e2df31b9d2217b --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX2.42C4093A-A313-41E6-B2FD-B7928F9B32F9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:549842a8c6a5e44df13f33114a5ce9f47479ec9fe39afef3932d46aeadd78e4d +size 208504788 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX2.42C4093A-A313-41E6-B2FD-B7928F9B32F9.svs/mask.npy b/features/TCGA-G2-A2EC-01Z-00-DX2.42C4093A-A313-41E6-B2FD-B7928F9B32F9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e96a3472a9ae91dbc6637ca3e8de6e3259e4445b --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX2.42C4093A-A313-41E6-B2FD-B7928F9B32F9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9151d625bec79107975e7ebe612731145a135081ec426aa55d8fa08c61e78baa +size 204318236 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX2.42C4093A-A313-41E6-B2FD-B7928F9B32F9.svs/metadata.json b/features/TCGA-G2-A2EC-01Z-00-DX2.42C4093A-A313-41E6-B2FD-B7928F9B32F9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..02c4975037d814b8d32647ab9905c6f68fd81cfc --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX2.42C4093A-A313-41E6-B2FD-B7928F9B32F9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25415, "total_number_of_tiles": 25415, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [136135, 96041], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [34, 24], "7": [67, 47], "8": [133, 94], "9": [266, 188], "10": [532, 376], "11": [1064, 751], "12": [2128, 1501], "13": [4255, 3002], "14": [8509, 6003], "15": [17017, 12006], "16": [34034, 24011], "17": [68068, 48021], "18": [136135, 96041]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ba5fc4bff92e7ce91b0d09b3a19ceaa0ee14a0d512e6b48e2515ec988bca6717"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EC-01Z-00-DX3.6DD4B773-86DE-4D58-A405-3C1B45FD6004.svs/features.npy b/features/TCGA-G2-A2EC-01Z-00-DX3.6DD4B773-86DE-4D58-A405-3C1B45FD6004.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9dd7ebf74adb9427f214ab4626280ee6d9b2f2c4 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX3.6DD4B773-86DE-4D58-A405-3C1B45FD6004.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bb035a107cddc9c4ec06465eb44dcdcf7c5a405a9319e77df601260c690bbe8d +size 171316056 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX3.6DD4B773-86DE-4D58-A405-3C1B45FD6004.svs/mask.npy b/features/TCGA-G2-A2EC-01Z-00-DX3.6DD4B773-86DE-4D58-A405-3C1B45FD6004.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0cf02f6b31bab346a8e46b6c2b8ce8f0378719a7 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX3.6DD4B773-86DE-4D58-A405-3C1B45FD6004.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:290975c1d192bce69216bf1e05ebbd7886744bfc42e4ee3f5b8cad0e68813321 +size 167942448 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX3.6DD4B773-86DE-4D58-A405-3C1B45FD6004.svs/metadata.json b/features/TCGA-G2-A2EC-01Z-00-DX3.6DD4B773-86DE-4D58-A405-3C1B45FD6004.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..56179082f376b64a2b3de21459df64c0d5afa433 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX3.6DD4B773-86DE-4D58-A405-3C1B45FD6004.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20882, "total_number_of_tiles": 20882, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123759, 86841], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 22], "6": [61, 43], "7": [121, 85], "8": [242, 170], "9": [484, 340], "10": [967, 679], "11": [1934, 1357], "12": [3868, 2714], "13": [7735, 5428], "14": [15470, 10856], "15": [30940, 21711], "16": [61880, 43421], "17": [123759, 86841]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d29e63addc7e38aebfea88658019f214"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EC-01Z-00-DX4.8E4382A4-71F9-4BC3-89AA-09B4F1B54985.svs/features.npy b/features/TCGA-G2-A2EC-01Z-00-DX4.8E4382A4-71F9-4BC3-89AA-09B4F1B54985.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cb104a6c9e8c2e2fcc58d3b92b82795c0b8b58cf --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX4.8E4382A4-71F9-4BC3-89AA-09B4F1B54985.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6789570579a4ef6f2fd6f2db5efbb6ef4662b72a76df0bead07bc0ece02a83de +size 143586536 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX4.8E4382A4-71F9-4BC3-89AA-09B4F1B54985.svs/mask.npy b/features/TCGA-G2-A2EC-01Z-00-DX4.8E4382A4-71F9-4BC3-89AA-09B4F1B54985.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..78951130fd0995b79ed5c20cf788145907c713fb --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX4.8E4382A4-71F9-4BC3-89AA-09B4F1B54985.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2b52f4a13ad2d8e6881ca44f22535fb39d88416e90206274a1a28b26c4c79d50 +size 207554520 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX4.8E4382A4-71F9-4BC3-89AA-09B4F1B54985.svs/metadata.json b/features/TCGA-G2-A2EC-01Z-00-DX4.8E4382A4-71F9-4BC3-89AA-09B4F1B54985.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..49f293a290d716f2d0d102d1971c08f1bde729eb --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX4.8E4382A4-71F9-4BC3-89AA-09B4F1B54985.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17502, "total_number_of_tiles": 17502, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [147559, 90006], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [19, 11], "6": [37, 22], "7": [73, 44], "8": [145, 88], "9": [289, 176], "10": [577, 352], "11": [1153, 704], "12": [2306, 1407], "13": [4612, 2813], "14": [9223, 5626], "15": [18445, 11251], "16": [36890, 22502], "17": [73780, 45003], "18": [147559, 90006]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c13fea76517cdac722a807cd2f199892d154c548e369fb08f1f2bca1b3259d93"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EC-01Z-00-DX5.94164B15-8070-4F16-B0A5-C9345E00BB83.svs/features.npy b/features/TCGA-G2-A2EC-01Z-00-DX5.94164B15-8070-4F16-B0A5-C9345E00BB83.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c79452a44db724f74f61e5868875a162293dfa07 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX5.94164B15-8070-4F16-B0A5-C9345E00BB83.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8e8ca34a5b95cca6a8ce7aea5fc03c1d321b533f8d04c3f95b6fba2ea1bc31d6 +size 203590592 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX5.94164B15-8070-4F16-B0A5-C9345E00BB83.svs/mask.npy b/features/TCGA-G2-A2EC-01Z-00-DX5.94164B15-8070-4F16-B0A5-C9345E00BB83.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1c34f2bb9406ad6e02cb8ad663767f16f83ebd81 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX5.94164B15-8070-4F16-B0A5-C9345E00BB83.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7c91b54e1f73fb7a5ec3eb950f6a2587597c344e172c7931e9a292f29af35116 +size 219692216 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX5.94164B15-8070-4F16-B0A5-C9345E00BB83.svs/metadata.json b/features/TCGA-G2-A2EC-01Z-00-DX5.94164B15-8070-4F16-B0A5-C9345E00BB83.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1dc006a9723d911b7ca668ebc69606019423910c --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX5.94164B15-8070-4F16-B0A5-C9345E00BB83.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24816, "total_number_of_tiles": 24816, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [146607, 95902], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [36, 24], "7": [72, 47], "8": [144, 94], "9": [287, 188], "10": [573, 375], "11": [1146, 750], "12": [2291, 1499], "13": [4582, 2997], "14": [9163, 5994], "15": [18326, 11988], "16": [36652, 23976], "17": [73304, 47951], "18": [146607, 95902]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9fcd14ac34c43b93a0cc353cb4d83f8d20fd2679b765b03fd6044e9b8c237a37"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EC-01Z-00-DX6.60307899-9A64-4176-8617-BEBEFEF81CEE.svs/features.npy b/features/TCGA-G2-A2EC-01Z-00-DX6.60307899-9A64-4176-8617-BEBEFEF81CEE.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4ed530ac41dadafb1a1fae85775997073138926d --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX6.60307899-9A64-4176-8617-BEBEFEF81CEE.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8c9b9bc10d4b6c491cd87d9ef0788e5bc8face328c8360bc0239f407cde66447 +size 120705580 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX6.60307899-9A64-4176-8617-BEBEFEF81CEE.svs/mask.npy b/features/TCGA-G2-A2EC-01Z-00-DX6.60307899-9A64-4176-8617-BEBEFEF81CEE.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..943ff175a2420f7d9fc3cd0f0bf78a7f6d697d98 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX6.60307899-9A64-4176-8617-BEBEFEF81CEE.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:79e4efb75c72fe13c34b1acf84ac05a2d067d733f385d3fe8fdcabdfdce4bbe2 +size 160540648 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX6.60307899-9A64-4176-8617-BEBEFEF81CEE.svs/metadata.json b/features/TCGA-G2-A2EC-01Z-00-DX6.60307899-9A64-4176-8617-BEBEFEF81CEE.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..26fc8b0cfb10aeeeced0c8c2c960ddfdac2b6df1 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX6.60307899-9A64-4176-8617-BEBEFEF81CEE.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14713, "total_number_of_tiles": 14713, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [110431, 93035], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [54, 46], "7": [108, 91], "8": [216, 182], "9": [432, 364], "10": [863, 727], "11": [1726, 1454], "12": [3451, 2908], "13": [6902, 5815], "14": [13804, 11630], "15": [27608, 23259], "16": [55216, 46518], "17": [110431, 93035]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "da5ca9a30fd4d6b3e1ba644693921315"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EC-01Z-00-DX7.F421FDF6-AF52-44C9-8AB2-9E37E1B8C8CC.svs/features.npy b/features/TCGA-G2-A2EC-01Z-00-DX7.F421FDF6-AF52-44C9-8AB2-9E37E1B8C8CC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7c77ca6fc3ded73d7f8e0b5fd5b2c899335c6396 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX7.F421FDF6-AF52-44C9-8AB2-9E37E1B8C8CC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f2b24d14c2022f5608956dc03d44ec5a5525c2b750cf8f3f72ea17207377264a +size 159559724 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX7.F421FDF6-AF52-44C9-8AB2-9E37E1B8C8CC.svs/mask.npy b/features/TCGA-G2-A2EC-01Z-00-DX7.F421FDF6-AF52-44C9-8AB2-9E37E1B8C8CC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f9b77748f41c38d5d2cfe3a1f5c8cb118c2c54de --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX7.F421FDF6-AF52-44C9-8AB2-9E37E1B8C8CC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:adeef62da8efd1e262662b8e42b01628f1f86a561e5aeeb345c57541b0341255 +size 195713344 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX7.F421FDF6-AF52-44C9-8AB2-9E37E1B8C8CC.svs/metadata.json b/features/TCGA-G2-A2EC-01Z-00-DX7.F421FDF6-AF52-44C9-8AB2-9E37E1B8C8CC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..83a6aa52f6c7753716fad994c61e50cf69d25ba3 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX7.F421FDF6-AF52-44C9-8AB2-9E37E1B8C8CC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19449, "total_number_of_tiles": 19449, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [130423, 96028], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [32, 24], "6": [64, 47], "7": [128, 94], "8": [255, 188], "9": [510, 376], "10": [1019, 751], "11": [2038, 1501], "12": [4076, 3001], "13": [8152, 6002], "14": [16303, 12004], "15": [32606, 24007], "16": [65212, 48014], "17": [130423, 96028]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "389df4f322a4ce7decea2698b18d1a9f50b23de5186046d017b7f2ba03ede096"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EC-01Z-00-DX8.59E69965-ADB5-4E9D-B455-D766A90EB2AD.svs/features.npy b/features/TCGA-G2-A2EC-01Z-00-DX8.59E69965-ADB5-4E9D-B455-D766A90EB2AD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a5d8fed0ff8cd0445b44b982f54aa80e8b521250 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX8.59E69965-ADB5-4E9D-B455-D766A90EB2AD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:823fbb9d3e02dd48b447644b1d9896fffe550526971f45194b18c5f28c81dac2 +size 135267680 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX8.59E69965-ADB5-4E9D-B455-D766A90EB2AD.svs/mask.npy b/features/TCGA-G2-A2EC-01Z-00-DX8.59E69965-ADB5-4E9D-B455-D766A90EB2AD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..2ab7fb3961a2b1e8dc6f7fd789d51771dc2cc6ba --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX8.59E69965-ADB5-4E9D-B455-D766A90EB2AD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2dae9bed24f4e94fdada1783a5b15bc6c73a8bb8b0e85c68d253839b4731d34d +size 186249884 diff --git a/features/TCGA-G2-A2EC-01Z-00-DX8.59E69965-ADB5-4E9D-B455-D766A90EB2AD.svs/metadata.json b/features/TCGA-G2-A2EC-01Z-00-DX8.59E69965-ADB5-4E9D-B455-D766A90EB2AD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..961ea51be6b30e057ff99b2dcb834b326fc72947 --- /dev/null +++ b/features/TCGA-G2-A2EC-01Z-00-DX8.59E69965-ADB5-4E9D-B455-D766A90EB2AD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16488, "total_number_of_tiles": 16488, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135183, 88176], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [34, 22], "7": [67, 44], "8": [133, 87], "9": [265, 173], "10": [529, 345], "11": [1057, 689], "12": [2113, 1378], "13": [4225, 2756], "14": [8449, 5511], "15": [16898, 11022], "16": [33796, 22044], "17": [67592, 44088], "18": [135183, 88176]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1625f4dceb7fdf1643476d758216f8c12c7228213ee681423a75657fc4fe2323"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EF-01Z-00-DX1.5FA6C53C-C749-46CE-B85C-DDFE27962F7C.svs/features.npy b/features/TCGA-G2-A2EF-01Z-00-DX1.5FA6C53C-C749-46CE-B85C-DDFE27962F7C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..23645a5f0e1a5bc105b3bbbb456da1fb7c012360 --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX1.5FA6C53C-C749-46CE-B85C-DDFE27962F7C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d79bb7df938fbe12bae873f1648923c1a04a9da0ea18f63c6d37d5f03aa8e992 +size 190316520 diff --git a/features/TCGA-G2-A2EF-01Z-00-DX1.5FA6C53C-C749-46CE-B85C-DDFE27962F7C.svs/mask.npy b/features/TCGA-G2-A2EF-01Z-00-DX1.5FA6C53C-C749-46CE-B85C-DDFE27962F7C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..24de18a5737a6c8a165e120f412cf63cc7572654 --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX1.5FA6C53C-C749-46CE-B85C-DDFE27962F7C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0fbf4c2f26ed79aa80ac51e2845b6c0f33ba3bb431f92f32a8a89adbd42b5dac +size 201111152 diff --git a/features/TCGA-G2-A2EF-01Z-00-DX1.5FA6C53C-C749-46CE-B85C-DDFE27962F7C.svs/metadata.json b/features/TCGA-G2-A2EF-01Z-00-DX1.5FA6C53C-C749-46CE-B85C-DDFE27962F7C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e8ea23973bcd6143172fa799a9fc16f137a03b6a --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX1.5FA6C53C-C749-46CE-B85C-DDFE27962F7C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23198, "total_number_of_tiles": 23198, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [139943, 91956], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [35, 23], "7": [69, 45], "8": [137, 90], "9": [274, 180], "10": [547, 360], "11": [1094, 719], "12": [2187, 1437], "13": [4374, 2874], "14": [8747, 5748], "15": [17493, 11495], "16": [34986, 22989], "17": [69972, 45978], "18": [139943, 91956]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "11c015f510a0ab25a4cf4e82338c519b0373b14e51468e55a5d92ab4c1e99bc4"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EF-01Z-00-DX2.90428613-C414-421F-9502-EADCEBC47184.svs/features.npy b/features/TCGA-G2-A2EF-01Z-00-DX2.90428613-C414-421F-9502-EADCEBC47184.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..27677063e145b440cd00e27af4c64da1bc74f3be --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX2.90428613-C414-421F-9502-EADCEBC47184.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3bbf247142786da6c8540023a1b3b932fd8f97fb63fc7d5cae31fcca72465ce2 +size 178396108 diff --git a/features/TCGA-G2-A2EF-01Z-00-DX2.90428613-C414-421F-9502-EADCEBC47184.svs/mask.npy b/features/TCGA-G2-A2EF-01Z-00-DX2.90428613-C414-421F-9502-EADCEBC47184.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c45c5e09a8de9187b781b8af0ab6f5a3f185f4f4 --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX2.90428613-C414-421F-9502-EADCEBC47184.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:05f223fd6bc3f92e5979a7cfc14c10cdee08ab6cd578f4f1cac857c8a247e2a7 +size 189999440 diff --git a/features/TCGA-G2-A2EF-01Z-00-DX2.90428613-C414-421F-9502-EADCEBC47184.svs/metadata.json b/features/TCGA-G2-A2EF-01Z-00-DX2.90428613-C414-421F-9502-EADCEBC47184.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cc2cbf62e3e3b0f98d5cf61c19f5abbedd40ecb1 --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX2.90428613-C414-421F-9502-EADCEBC47184.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21745, "total_number_of_tiles": 21745, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [126615, 96019], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 24], "6": [62, 47], "7": [124, 94], "8": [248, 188], "9": [495, 376], "10": [990, 751], "11": [1979, 1501], "12": [3957, 3001], "13": [7914, 6002], "14": [15827, 12003], "15": [31654, 24005], "16": [63308, 48010], "17": [126615, 96019]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5b78b0c2973249e7f321d8ae306f1c90"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EF-01Z-00-DX3.04EC2CA4-7CCF-4DB6-829D-9067E7EF07C4.svs/features.npy b/features/TCGA-G2-A2EF-01Z-00-DX3.04EC2CA4-7CCF-4DB6-829D-9067E7EF07C4.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4c3184ed38a010b9e1f83992f5b91c5193976f16 --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX3.04EC2CA4-7CCF-4DB6-829D-9067E7EF07C4.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f5afb2b23952cf6e55d2511a04791b05deb0cee7d4dc40be68c27e8ff55a18f3 +size 230991952 diff --git a/features/TCGA-G2-A2EF-01Z-00-DX3.04EC2CA4-7CCF-4DB6-829D-9067E7EF07C4.svs/mask.npy b/features/TCGA-G2-A2EF-01Z-00-DX3.04EC2CA4-7CCF-4DB6-829D-9067E7EF07C4.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b76606a78eaa7995fd39aa0f92c1ace4812f5977 --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX3.04EC2CA4-7CCF-4DB6-829D-9067E7EF07C4.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7afe2f67229a6c7f924cae8cb828f452e7d5d1b19a9705b7bcfeb315daeef44c +size 228670528 diff --git a/features/TCGA-G2-A2EF-01Z-00-DX3.04EC2CA4-7CCF-4DB6-829D-9067E7EF07C4.svs/metadata.json b/features/TCGA-G2-A2EF-01Z-00-DX3.04EC2CA4-7CCF-4DB6-829D-9067E7EF07C4.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fb5431bc036bc6a7acf6dd6033b9d2111f13eb0a --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX3.04EC2CA4-7CCF-4DB6-829D-9067E7EF07C4.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 28156, "total_number_of_tiles": 28156, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [152319, 96079], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [19, 12], "6": [38, 24], "7": [75, 47], "8": [149, 94], "9": [298, 188], "10": [595, 376], "11": [1190, 751], "12": [2380, 1502], "13": [4760, 3003], "14": [9520, 6005], "15": [19040, 12010], "16": [38080, 24020], "17": [76160, 48040], "18": [152319, 96079]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "fd35fc8b516a8cf749f463c24ee36886db3eaf261d22a846f4ee76a3d1772f4d"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EF-01Z-00-DX4.70FC5B2D-E8EC-41EE-99B7-CB3FFC0F4D98.svs/features.npy b/features/TCGA-G2-A2EF-01Z-00-DX4.70FC5B2D-E8EC-41EE-99B7-CB3FFC0F4D98.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7641b3ad9341ca8f7a5edfc99fb114e28c3a938b --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX4.70FC5B2D-E8EC-41EE-99B7-CB3FFC0F4D98.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:03dcfe6581da261831eadb590cc6293eb517bb92c9512d0ec84c2f2cc5fd3729 +size 189840688 diff --git a/features/TCGA-G2-A2EF-01Z-00-DX4.70FC5B2D-E8EC-41EE-99B7-CB3FFC0F4D98.svs/mask.npy b/features/TCGA-G2-A2EF-01Z-00-DX4.70FC5B2D-E8EC-41EE-99B7-CB3FFC0F4D98.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..29305c00fd7307e687a6ef3145928bd30f7679cf --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX4.70FC5B2D-E8EC-41EE-99B7-CB3FFC0F4D98.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8e8f22521273cc9d35759f61c9ac0ffa221706cfdb6676ba5b4e949426cb403b +size 218641792 diff --git a/features/TCGA-G2-A2EF-01Z-00-DX4.70FC5B2D-E8EC-41EE-99B7-CB3FFC0F4D98.svs/metadata.json b/features/TCGA-G2-A2EF-01Z-00-DX4.70FC5B2D-E8EC-41EE-99B7-CB3FFC0F4D98.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c663ac201047496b9517ebe7e9ac7b3fd017e4bd --- /dev/null +++ b/features/TCGA-G2-A2EF-01Z-00-DX4.70FC5B2D-E8EC-41EE-99B7-CB3FFC0F4D98.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23140, "total_number_of_tiles": 23140, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [145655, 96063], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [36, 24], "7": [72, 47], "8": [143, 94], "9": [285, 188], "10": [569, 376], "11": [1138, 751], "12": [2276, 1501], "13": [4552, 3002], "14": [9104, 6004], "15": [18207, 12008], "16": [36414, 24016], "17": [72828, 48032], "18": [145655, 96063]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2d3967100dc9717cb1b06c76be707057af68545b9dce9c2447e47185ffda7805"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX1.BBADB2AF-BF32-4678-A54B-F82CA11DC715.svs/features.npy b/features/TCGA-G2-A2EJ-01Z-00-DX1.BBADB2AF-BF32-4678-A54B-F82CA11DC715.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..37aab800d82a6ff716b60b7d85815647511b470c --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX1.BBADB2AF-BF32-4678-A54B-F82CA11DC715.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0e24faa88c75ac9168a05cf90a87995fbb5c58cb31cdffb7cd836a7bfe62e014 +size 176820940 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX1.BBADB2AF-BF32-4678-A54B-F82CA11DC715.svs/mask.npy b/features/TCGA-G2-A2EJ-01Z-00-DX1.BBADB2AF-BF32-4678-A54B-F82CA11DC715.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e525d1bc761507d688e76b197c632df701315766 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX1.BBADB2AF-BF32-4678-A54B-F82CA11DC715.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a728d447a336fb84f57535672ff53d22c58ebba1660b8476b6a3fad7ccbcf8e3 +size 182118680 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX1.BBADB2AF-BF32-4678-A54B-F82CA11DC715.svs/metadata.json b/features/TCGA-G2-A2EJ-01Z-00-DX1.BBADB2AF-BF32-4678-A54B-F82CA11DC715.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4fb115a862157753c54fba7a08020432fa4ac12a --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX1.BBADB2AF-BF32-4678-A54B-F82CA11DC715.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21553, "total_number_of_tiles": 21553, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125663, 92742], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [62, 46], "7": [123, 91], "8": [246, 182], "9": [491, 363], "10": [982, 725], "11": [1964, 1450], "12": [3927, 2899], "13": [7854, 5797], "14": [15708, 11593], "15": [31416, 23186], "16": [62832, 46371], "17": [125663, 92742]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "beab69a4593745245ed786faccb410f9"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX2.3DCD4041-FBE0-45B4-BD5B-6A9E8200289C.svs/features.npy b/features/TCGA-G2-A2EJ-01Z-00-DX2.3DCD4041-FBE0-45B4-BD5B-6A9E8200289C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d9376f46a3815eb4ff7abdc07977a8da2082dd41 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX2.3DCD4041-FBE0-45B4-BD5B-6A9E8200289C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c688380c91488844a27fe4329aed8f505879f1a72ad586828606ac2e43de330e +size 164523144 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX2.3DCD4041-FBE0-45B4-BD5B-6A9E8200289C.svs/mask.npy b/features/TCGA-G2-A2EJ-01Z-00-DX2.3DCD4041-FBE0-45B4-BD5B-6A9E8200289C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f218bd563fa5f5078eb9ee4b8ff592dfde1a81d5 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX2.3DCD4041-FBE0-45B4-BD5B-6A9E8200289C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2a4919f56f4aebc7cb281a8c841737b97b53ed04153aaa633381429c7c1e111f +size 117914384 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX2.3DCD4041-FBE0-45B4-BD5B-6A9E8200289C.svs/metadata.json b/features/TCGA-G2-A2EJ-01Z-00-DX2.3DCD4041-FBE0-45B4-BD5B-6A9E8200289C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e16c72fdc459e9b3bf72654f39111ce0d3cd4f07 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX2.3DCD4041-FBE0-45B4-BD5B-6A9E8200289C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20054, "total_number_of_tiles": 20054, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [94247, 80056], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [24, 20], "6": [47, 40], "7": [93, 79], "8": [185, 157], "9": [369, 313], "10": [737, 626], "11": [1473, 1251], "12": [2946, 2502], "13": [5891, 5004], "14": [11781, 10007], "15": [23562, 20014], "16": [47124, 40028], "17": [94247, 80056]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f60561c1dcbe3807c93639568ca3bd11"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX3.3FA3BE61-17DA-4CFE-8845-0889701340EB.svs/features.npy b/features/TCGA-G2-A2EJ-01Z-00-DX3.3FA3BE61-17DA-4CFE-8845-0889701340EB.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..42df4bfc23c28db47f080bfac6d5d7e162bb272b --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX3.3FA3BE61-17DA-4CFE-8845-0889701340EB.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:114e8200da0f9638aacfea6f9f8f5898d6a58e2470589d6c61350d7f24d5c4a8 +size 106840820 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX3.3FA3BE61-17DA-4CFE-8845-0889701340EB.svs/mask.npy b/features/TCGA-G2-A2EJ-01Z-00-DX3.3FA3BE61-17DA-4CFE-8845-0889701340EB.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..930168c54080a340c3e3fe93788e030ceff33400 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX3.3FA3BE61-17DA-4CFE-8845-0889701340EB.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b3dc07c14473ca26dbd479d083c6666d4ccb220191d2623d79ec4b0c2b9a7a38 +size 99945168 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX3.3FA3BE61-17DA-4CFE-8845-0889701340EB.svs/metadata.json b/features/TCGA-G2-A2EJ-01Z-00-DX3.3FA3BE61-17DA-4CFE-8845-0889701340EB.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..17fffd39fd8ab1f3611b2d3ced11390341a73d5d --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX3.3FA3BE61-17DA-4CFE-8845-0889701340EB.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13023, "total_number_of_tiles": 13023, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [90439, 70710], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 9], "5": [23, 18], "6": [45, 35], "7": [89, 70], "8": [177, 139], "9": [354, 277], "10": [707, 553], "11": [1414, 1105], "12": [2827, 2210], "13": [5653, 4420], "14": [11305, 8839], "15": [22610, 17678], "16": [45220, 35355], "17": [90439, 70710]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "952973cf2d26ae8dc00031ec066cf8a8f33fe98c6699948de7e908a100f42f38"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX4.A156EE54-2814-415F-A7AD-9E408E7B0F50.svs/features.npy b/features/TCGA-G2-A2EJ-01Z-00-DX4.A156EE54-2814-415F-A7AD-9E408E7B0F50.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ea9ad88173052be4de60890d290b3bd85a441d66 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX4.A156EE54-2814-415F-A7AD-9E408E7B0F50.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:238d1df25b573b0cd350abcaf19dddeef12bac1acdb3f8b19699010a5ad41fa6 +size 124979864 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX4.A156EE54-2814-415F-A7AD-9E408E7B0F50.svs/mask.npy b/features/TCGA-G2-A2EJ-01Z-00-DX4.A156EE54-2814-415F-A7AD-9E408E7B0F50.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c4563b16a2d7acd93561799613577040677cc4f8 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX4.A156EE54-2814-415F-A7AD-9E408E7B0F50.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7f7aa1bb5786317836c7a4057b7bed202d680e63a1e27daf0156b16249849f19 +size 103815252 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX4.A156EE54-2814-415F-A7AD-9E408E7B0F50.svs/metadata.json b/features/TCGA-G2-A2EJ-01Z-00-DX4.A156EE54-2814-415F-A7AD-9E408E7B0F50.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..10785bd3b06cc6632a13d3c90a87664baaa5a12f --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX4.A156EE54-2814-415F-A7AD-9E408E7B0F50.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15234, "total_number_of_tiles": 15234, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93295, 71207], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 9], "5": [23, 18], "6": [46, 35], "7": [92, 70], "8": [183, 140], "9": [365, 279], "10": [729, 557], "11": [1458, 1113], "12": [2916, 2226], "13": [5831, 4451], "14": [11662, 8901], "15": [23324, 17802], "16": [46648, 35604], "17": [93295, 71207]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d9d5cbb746cb00ba0b93a3901544f7fe"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX5.B20A9A5E-23B7-4C19-A021-8B19D56C80B2.svs/features.npy b/features/TCGA-G2-A2EJ-01Z-00-DX5.B20A9A5E-23B7-4C19-A021-8B19D56C80B2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..183db53ea86d2234db5125710f2d8ef0b9cfca41 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX5.B20A9A5E-23B7-4C19-A021-8B19D56C80B2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2e295db8ed815874f1a11ae350acddaf109535f6a7d06529ca6fb77c7ff50734 +size 177460852 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX5.B20A9A5E-23B7-4C19-A021-8B19D56C80B2.svs/mask.npy b/features/TCGA-G2-A2EJ-01Z-00-DX5.B20A9A5E-23B7-4C19-A021-8B19D56C80B2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ab9267e7ffcaaa5a3a4ce88cd7cd721e0f7e7935 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX5.B20A9A5E-23B7-4C19-A021-8B19D56C80B2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:60e271cc94cf4a6cd53c0f23edfdf9b7091bde4c1c9d4e21d432e45fadd565d6 +size 144607024 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX5.B20A9A5E-23B7-4C19-A021-8B19D56C80B2.svs/metadata.json b/features/TCGA-G2-A2EJ-01Z-00-DX5.B20A9A5E-23B7-4C19-A021-8B19D56C80B2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f28e3ce80c90a0a0f5d81b437a86fd281f1f9fdb --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX5.B20A9A5E-23B7-4C19-A021-8B19D56C80B2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21631, "total_number_of_tiles": 21631, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [100911, 91702], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [25, 23], "6": [50, 45], "7": [99, 90], "8": [198, 180], "9": [395, 359], "10": [789, 717], "11": [1577, 1433], "12": [3154, 2866], "13": [6307, 5732], "14": [12614, 11463], "15": [25228, 22926], "16": [50456, 45851], "17": [100911, 91702]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e32ba4f29e9a5c562b165fe725bce7aa"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX6.6EFFECC5-45F4-4828-8AD7-84E060E6FC9D.svs/features.npy b/features/TCGA-G2-A2EJ-01Z-00-DX6.6EFFECC5-45F4-4828-8AD7-84E060E6FC9D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3abdaa9800b26bb342040e6effd01a34cd98ac3a --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX6.6EFFECC5-45F4-4828-8AD7-84E060E6FC9D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:924591a38e757de2925b79c8ddfb13e6c2723f191605541f2e7b3e337deb2c87 +size 179528260 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX6.6EFFECC5-45F4-4828-8AD7-84E060E6FC9D.svs/mask.npy b/features/TCGA-G2-A2EJ-01Z-00-DX6.6EFFECC5-45F4-4828-8AD7-84E060E6FC9D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c0f96a0c7e0211f52c94932dc221ffbdcb654c69 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX6.6EFFECC5-45F4-4828-8AD7-84E060E6FC9D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e523c46eeba357553497db2ae09b6dfc925fe537b0164aa0b115d96aa6907f2c +size 187899224 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX6.6EFFECC5-45F4-4828-8AD7-84E060E6FC9D.svs/metadata.json b/features/TCGA-G2-A2EJ-01Z-00-DX6.6EFFECC5-45F4-4828-8AD7-84E060E6FC9D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b5693f74723a0ea9695213df7bb52baf5ebba119 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX6.6EFFECC5-45F4-4828-8AD7-84E060E6FC9D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21883, "total_number_of_tiles": 21883, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125663, 95690], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 24], "6": [62, 47], "7": [123, 94], "8": [246, 187], "9": [491, 374], "10": [982, 748], "11": [1964, 1496], "12": [3927, 2991], "13": [7854, 5981], "14": [15708, 11962], "15": [31416, 23923], "16": [62832, 47845], "17": [125663, 95690]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "84194489d8403706a6aa114418eb886c"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX7.79C8E05D-5640-49AC-923D-58030F64DD5A.svs/features.npy b/features/TCGA-G2-A2EJ-01Z-00-DX7.79C8E05D-5640-49AC-923D-58030F64DD5A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e341572e60627c83ed301f6b3b700dc36e6d2297 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX7.79C8E05D-5640-49AC-923D-58030F64DD5A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f40c0ab8ef90899bb2be142911d1427df382883558152b3272101bb2c627a920 +size 204246912 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX7.79C8E05D-5640-49AC-923D-58030F64DD5A.svs/mask.npy b/features/TCGA-G2-A2EJ-01Z-00-DX7.79C8E05D-5640-49AC-923D-58030F64DD5A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..fb4f6b49ee7b0c85dc9326a00aab40d2464a2a3b --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX7.79C8E05D-5640-49AC-923D-58030F64DD5A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f08dc3d7a592e360c9983dbe127c7009bd1e30ccf53d0a283dbff1929373cb9d +size 199622740 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX7.79C8E05D-5640-49AC-923D-58030F64DD5A.svs/metadata.json b/features/TCGA-G2-A2EJ-01Z-00-DX7.79C8E05D-5640-49AC-923D-58030F64DD5A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..dcf22695123da8b29a23510a768d4717ec9a1223 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX7.79C8E05D-5640-49AC-923D-58030F64DD5A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24896, "total_number_of_tiles": 24896, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [147559, 86566], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [19, 11], "6": [37, 22], "7": [73, 43], "8": [145, 85], "9": [289, 170], "10": [577, 339], "11": [1153, 677], "12": [2306, 1353], "13": [4612, 2706], "14": [9223, 5411], "15": [18445, 10821], "16": [36890, 21642], "17": [73780, 43283], "18": [147559, 86566]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4dc2fb4a1dadd6a0eabd39354c58a30114687ac52af668aa02fa8af6584ed580"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX8.C3EB2C27-F483-4CE5-AF8D-2AF462AB296F.svs/features.npy b/features/TCGA-G2-A2EJ-01Z-00-DX8.C3EB2C27-F483-4CE5-AF8D-2AF462AB296F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7d8a64c8abf3bfefbd4afee130a0dc0f0f464506 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX8.C3EB2C27-F483-4CE5-AF8D-2AF462AB296F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:aaeb6b6feb78890d902f0d285b49352727f0f6b3fb7fc84c0773085f81ce5a78 +size 169872152 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX8.C3EB2C27-F483-4CE5-AF8D-2AF462AB296F.svs/mask.npy b/features/TCGA-G2-A2EJ-01Z-00-DX8.C3EB2C27-F483-4CE5-AF8D-2AF462AB296F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f8234d7cfb19d5da8d6c8c6cb4c30454130d6335 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX8.C3EB2C27-F483-4CE5-AF8D-2AF462AB296F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:50c96b9a3b06cb5bba6e44dc22b936fe739dff4e12c5deb7a27dfc11d24d5ca5 +size 148102720 diff --git a/features/TCGA-G2-A2EJ-01Z-00-DX8.C3EB2C27-F483-4CE5-AF8D-2AF462AB296F.svs/metadata.json b/features/TCGA-G2-A2EJ-01Z-00-DX8.C3EB2C27-F483-4CE5-AF8D-2AF462AB296F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ad09689a8ea614c734ebf2db927e01232badcad9 --- /dev/null +++ b/features/TCGA-G2-A2EJ-01Z-00-DX8.C3EB2C27-F483-4CE5-AF8D-2AF462AB296F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20706, "total_number_of_tiles": 20706, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99959, 94812], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [25, 24], "6": [49, 47], "7": [98, 93], "8": [196, 186], "9": [391, 371], "10": [781, 741], "11": [1562, 1482], "12": [3124, 2963], "13": [6248, 5926], "14": [12495, 11852], "15": [24990, 23703], "16": [49980, 47406], "17": [99959, 94812]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ec9681a2c5b7b91b0bdaa1ac626fd5f5"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EK-01Z-00-DX1.1F826341-0877-46E0-8DB7-9D01E8874614.svs/features.npy b/features/TCGA-G2-A2EK-01Z-00-DX1.1F826341-0877-46E0-8DB7-9D01E8874614.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1e7877a853bb1703fca32a7ad8ff37ae305fe3b7 --- /dev/null +++ b/features/TCGA-G2-A2EK-01Z-00-DX1.1F826341-0877-46E0-8DB7-9D01E8874614.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3604dcfcbea0c899eac4fb6ba14d995fa74c36c52cd011ad38a57d2eaf3ee43e +size 149312928 diff --git a/features/TCGA-G2-A2EK-01Z-00-DX1.1F826341-0877-46E0-8DB7-9D01E8874614.svs/mask.npy b/features/TCGA-G2-A2EK-01Z-00-DX1.1F826341-0877-46E0-8DB7-9D01E8874614.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1bfb1080107de121a0d7f5b7a8d95ddfe7ac48be --- /dev/null +++ b/features/TCGA-G2-A2EK-01Z-00-DX1.1F826341-0877-46E0-8DB7-9D01E8874614.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e79e4fbd28bc18806b07f0d2ccf57bb1c88bc5f8daedb4766618cbc4432f7be8 +size 181398356 diff --git a/features/TCGA-G2-A2EK-01Z-00-DX1.1F826341-0877-46E0-8DB7-9D01E8874614.svs/metadata.json b/features/TCGA-G2-A2EK-01Z-00-DX1.1F826341-0877-46E0-8DB7-9D01E8874614.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bbfbe561feb6dbc0d9a05132f67980d94c49ab75 --- /dev/null +++ b/features/TCGA-G2-A2EK-01Z-00-DX1.1F826341-0877-46E0-8DB7-9D01E8874614.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18200, "total_number_of_tiles": 18200, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [120903, 96006], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 24], "6": [60, 47], "7": [119, 94], "8": [237, 188], "9": [473, 376], "10": [945, 751], "11": [1890, 1501], "12": [3779, 3001], "13": [7557, 6001], "14": [15113, 12001], "15": [30226, 24002], "16": [60452, 48003], "17": [120903, 96006]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "01a0554253d0f12902afbd732673db7e"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EK-01Z-00-DX2.F68EC7A1-2B48-42EB-8621-39D8547E408D.svs/features.npy b/features/TCGA-G2-A2EK-01Z-00-DX2.F68EC7A1-2B48-42EB-8621-39D8547E408D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..96c27bddfebef0145f2610e469649d7a5cdfcab2 --- /dev/null +++ b/features/TCGA-G2-A2EK-01Z-00-DX2.F68EC7A1-2B48-42EB-8621-39D8547E408D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:563d6f4cc562ca10e14fd6073e1762f5e9e684ceaae82ab44e63fba3b97eac55 +size 140329548 diff --git a/features/TCGA-G2-A2EK-01Z-00-DX2.F68EC7A1-2B48-42EB-8621-39D8547E408D.svs/mask.npy b/features/TCGA-G2-A2EK-01Z-00-DX2.F68EC7A1-2B48-42EB-8621-39D8547E408D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ca489aa0356e1766217a0df9963947cfcceb5ee2 --- /dev/null +++ b/features/TCGA-G2-A2EK-01Z-00-DX2.F68EC7A1-2B48-42EB-8621-39D8547E408D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c9741356b1bbe8fb5f014dd6e8389eeed8f7b46b7dce18013636ae13b22e472c +size 167088128 diff --git a/features/TCGA-G2-A2EK-01Z-00-DX2.F68EC7A1-2B48-42EB-8621-39D8547E408D.svs/metadata.json b/features/TCGA-G2-A2EK-01Z-00-DX2.F68EC7A1-2B48-42EB-8621-39D8547E408D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..aafa8094e32133ece6f66a660db04fbc2fa34593 --- /dev/null +++ b/features/TCGA-G2-A2EK-01Z-00-DX2.F68EC7A1-2B48-42EB-8621-39D8547E408D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17105, "total_number_of_tiles": 17105, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111383, 95986], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [28, 24], "6": [55, 47], "7": [109, 94], "8": [218, 188], "9": [436, 375], "10": [871, 750], "11": [1741, 1500], "12": [3481, 3000], "13": [6962, 6000], "14": [13923, 11999], "15": [27846, 23997], "16": [55692, 47993], "17": [111383, 95986]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5d8eae9b2688623d94e9f88efab3ff46"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EK-01Z-00-DX3.22408270-F6D1-4257-9014-E13C7B69A407.svs/features.npy b/features/TCGA-G2-A2EK-01Z-00-DX3.22408270-F6D1-4257-9014-E13C7B69A407.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..64da17e342c3fb8d324c96f0725b9958e7925ea8 --- /dev/null +++ b/features/TCGA-G2-A2EK-01Z-00-DX3.22408270-F6D1-4257-9014-E13C7B69A407.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:64c7270dc363aa1f207632b5a17a189f15a397fa454a6d0cc8cd9d6271ac33a3 +size 160937996 diff --git a/features/TCGA-G2-A2EK-01Z-00-DX3.22408270-F6D1-4257-9014-E13C7B69A407.svs/mask.npy b/features/TCGA-G2-A2EK-01Z-00-DX3.22408270-F6D1-4257-9014-E13C7B69A407.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7ad33b647af7361e296793713bf3a505106bb7d5 --- /dev/null +++ b/features/TCGA-G2-A2EK-01Z-00-DX3.22408270-F6D1-4257-9014-E13C7B69A407.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4140f92d7682fc9dc2113fd57116a229637e79efaa15e25a7733f806a7416494 +size 156703136 diff --git a/features/TCGA-G2-A2EK-01Z-00-DX3.22408270-F6D1-4257-9014-E13C7B69A407.svs/metadata.json b/features/TCGA-G2-A2EK-01Z-00-DX3.22408270-F6D1-4257-9014-E13C7B69A407.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e890b6a4101c00a6ca222f2c7a7823edcd1297b1 --- /dev/null +++ b/features/TCGA-G2-A2EK-01Z-00-DX3.22408270-F6D1-4257-9014-E13C7B69A407.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19617, "total_number_of_tiles": 19617, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125663, 79800], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [31, 20], "6": [62, 39], "7": [123, 78], "8": [246, 156], "9": [491, 312], "10": [982, 624], "11": [1964, 1247], "12": [3927, 2494], "13": [7854, 4988], "14": [15708, 9975], "15": [31416, 19950], "16": [62832, 39900], "17": [125663, 79800]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bb015390c2264aeaafa80d67867f872c"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EL-01Z-00-DX1.CCC37120-A9F0-4278-9EA6-6CD1A132596C.svs/features.npy b/features/TCGA-G2-A2EL-01Z-00-DX1.CCC37120-A9F0-4278-9EA6-6CD1A132596C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5ba5ee0fd03a430309668dc6c8f3fe48cf43bf0f --- /dev/null +++ b/features/TCGA-G2-A2EL-01Z-00-DX1.CCC37120-A9F0-4278-9EA6-6CD1A132596C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ff890d98342cda0cb9a1609b827e9e915cff6ae850719f2007ba7e3fb49c036 +size 187650220 diff --git a/features/TCGA-G2-A2EL-01Z-00-DX1.CCC37120-A9F0-4278-9EA6-6CD1A132596C.svs/mask.npy b/features/TCGA-G2-A2EL-01Z-00-DX1.CCC37120-A9F0-4278-9EA6-6CD1A132596C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e7bb869a802f66df69f6d15f389f52489d6c1da6 --- /dev/null +++ b/features/TCGA-G2-A2EL-01Z-00-DX1.CCC37120-A9F0-4278-9EA6-6CD1A132596C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bb002dc71686602e83c056cc9363d1dc130f92c0dfbd77287f2908dbb6ff47e5 +size 200020088 diff --git a/features/TCGA-G2-A2EL-01Z-00-DX1.CCC37120-A9F0-4278-9EA6-6CD1A132596C.svs/metadata.json b/features/TCGA-G2-A2EL-01Z-00-DX1.CCC37120-A9F0-4278-9EA6-6CD1A132596C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b25d32a0365be78efd82a2002ee78722daa34d8d --- /dev/null +++ b/features/TCGA-G2-A2EL-01Z-00-DX1.CCC37120-A9F0-4278-9EA6-6CD1A132596C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22873, "total_number_of_tiles": 22873, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [133279, 96036], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [33, 24], "7": [66, 47], "8": [131, 94], "9": [261, 188], "10": [521, 376], "11": [1042, 751], "12": [2083, 1501], "13": [4165, 3002], "14": [8330, 6003], "15": [16660, 12005], "16": [33320, 24009], "17": [66640, 48018], "18": [133279, 96036]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "38b1ac7e7a479c861ab3a0c98dd2f195c42bfc04b8d614ce05f0bb2ab81c25ae"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EL-01Z-00-DX2.2E59E1ED-C518-46EC-B60A-B083BA3A77C7.svs/features.npy b/features/TCGA-G2-A2EL-01Z-00-DX2.2E59E1ED-C518-46EC-B60A-B083BA3A77C7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6393b031eee35f1a10a6513511945fbef9c485df --- /dev/null +++ b/features/TCGA-G2-A2EL-01Z-00-DX2.2E59E1ED-C518-46EC-B60A-B083BA3A77C7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bc18df90d725232cd219abf34b5c1ad706a2bb78fe221321bfaaee163f53acc5 +size 265711280 diff --git a/features/TCGA-G2-A2EL-01Z-00-DX2.2E59E1ED-C518-46EC-B60A-B083BA3A77C7.svs/mask.npy b/features/TCGA-G2-A2EL-01Z-00-DX2.2E59E1ED-C518-46EC-B60A-B083BA3A77C7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9ada510097fe16a2a7a1351a7ceb9efd2361e790 --- /dev/null +++ b/features/TCGA-G2-A2EL-01Z-00-DX2.2E59E1ED-C518-46EC-B60A-B083BA3A77C7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c43c09a631da05598e721be206c05f38e890d1f276af04fa248c1687f11317dc +size 158493708 diff --git a/features/TCGA-G2-A2EL-01Z-00-DX2.2E59E1ED-C518-46EC-B60A-B083BA3A77C7.svs/metadata.json b/features/TCGA-G2-A2EL-01Z-00-DX2.2E59E1ED-C518-46EC-B60A-B083BA3A77C7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9a07c8daeedf7e1729b5c78693ae44ca27971055 --- /dev/null +++ b/features/TCGA-G2-A2EL-01Z-00-DX2.2E59E1ED-C518-46EC-B60A-B083BA3A77C7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32388, "total_number_of_tiles": 32388, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105671, 95973], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [26, 24], "6": [52, 47], "7": [104, 94], "8": [207, 188], "9": [413, 375], "10": [826, 750], "11": [1652, 1500], "12": [3303, 3000], "13": [6605, 5999], "14": [13209, 11997], "15": [26418, 23994], "16": [52836, 47987], "17": [105671, 95973]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "25fdb38d4be5095538d8eaf223c579ef"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EO-01Z-00-DX1.E2FEF97D-F947-4497-8605-BBBFC3EC665B.svs/features.npy b/features/TCGA-G2-A2EO-01Z-00-DX1.E2FEF97D-F947-4497-8605-BBBFC3EC665B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..693b3542fa955563d0e430ae6faaf5809e4e82ce --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX1.E2FEF97D-F947-4497-8605-BBBFC3EC665B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a3167faa0eb7e6cd8c293fbe7b2b9865b957683f43b69f2fa00617ae253f6675 +size 32496172 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX1.E2FEF97D-F947-4497-8605-BBBFC3EC665B.svs/mask.npy b/features/TCGA-G2-A2EO-01Z-00-DX1.E2FEF97D-F947-4497-8605-BBBFC3EC665B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..2cdcc86211d57cdc300c76a6fa5a9a6089c8f07c --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX1.E2FEF97D-F947-4497-8605-BBBFC3EC665B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:384e74c99034ea0589be290f27bf82e7b3f0de45c004562d9a61ccb90335ebc1 +size 127050716 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX1.E2FEF97D-F947-4497-8605-BBBFC3EC665B.svs/metadata.json b/features/TCGA-G2-A2EO-01Z-00-DX1.E2FEF97D-F947-4497-8605-BBBFC3EC665B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..89ef94e67dd17274c302b1c94278995f889d386a --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX1.E2FEF97D-F947-4497-8605-BBBFC3EC665B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 3961, "total_number_of_tiles": 3961, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [89487, 90857], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 12], "5": [22, 23], "6": [44, 45], "7": [88, 89], "8": [175, 178], "9": [350, 355], "10": [700, 710], "11": [1399, 1420], "12": [2797, 2840], "13": [5593, 5679], "14": [11186, 11358], "15": [22372, 22715], "16": [44744, 45429], "17": [89487, 90857]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e1b7756406551b5b0c613e34f3f350f39cb77216972dda98b4ccac05939a55e9"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.svs/features.npy b/features/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..714f6c4251745190fad9a6a4d15e7ae348a94417 --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:08ee9b7abf788aecd83e05705a66919d8cc42352a42300384c60608efe6e833c +size 50495748 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.svs/mask.npy b/features/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4300ba61c19c1bed50814e4acb585112c06660ff --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f59e193cdeaa3e1cc5961e1b067d2a65d73bd3839e233c07ef8a344a02a4b604 +size 87725024 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.svs/metadata.json b/features/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8e13b6681e358c54ce0ceef655ab12d51718bb53 --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 6155, "total_number_of_tiles": 6155, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [79967, 70194], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [10, 9], "5": [20, 18], "6": [40, 35], "7": [79, 69], "8": [157, 138], "9": [313, 275], "10": [625, 549], "11": [1250, 1097], "12": [2499, 2194], "13": [4998, 4388], "14": [9996, 8775], "15": [19992, 17549], "16": [39984, 35097], "17": [79967, 70194]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c1790be71db156ef3489a24930b68f566f335ed2cadbf2a2923b1df0409bfb00"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EO-01Z-00-DX3.F64AE021-27AB-4B3C-9DD2-9B8A358326C3.svs/features.npy b/features/TCGA-G2-A2EO-01Z-00-DX3.F64AE021-27AB-4B3C-9DD2-9B8A358326C3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6c73c90b4d88fce27a00a5133d73a32c5cd83bba --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX3.F64AE021-27AB-4B3C-9DD2-9B8A358326C3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4ba30921a5d0a66aa6819bdd007b4e6a567c8fb44bcb03e828be77281f2dc274 +size 58502852 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX3.F64AE021-27AB-4B3C-9DD2-9B8A358326C3.svs/mask.npy b/features/TCGA-G2-A2EO-01Z-00-DX3.F64AE021-27AB-4B3C-9DD2-9B8A358326C3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b42bfcf408c853fc9990e0112dafa2577707521f --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX3.F64AE021-27AB-4B3C-9DD2-9B8A358326C3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ca3d427726c62f4bcc9b97b919293cb36780938ec33b321dc5651818e61aff2d +size 110531248 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX3.F64AE021-27AB-4B3C-9DD2-9B8A358326C3.svs/metadata.json b/features/TCGA-G2-A2EO-01Z-00-DX3.F64AE021-27AB-4B3C-9DD2-9B8A358326C3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cabec0f58e3912ae47212673c29399158530a34b --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX3.F64AE021-27AB-4B3C-9DD2-9B8A358326C3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 7131, "total_number_of_tiles": 7131, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101863, 69426], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 9], "5": [25, 17], "6": [50, 34], "7": [100, 68], "8": [199, 136], "9": [398, 272], "10": [796, 543], "11": [1592, 1085], "12": [3184, 2170], "13": [6367, 4340], "14": [12733, 8679], "15": [25466, 17357], "16": [50932, 34713], "17": [101863, 69426]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e5e8d74cd72cc9db3794cc7f7825b16eed0626d5daebe43da6e50d264a48cf67"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EO-01Z-00-DX4.BE1980E2-83B2-4E04-A6A4-9B71B15793B5.svs/features.npy b/features/TCGA-G2-A2EO-01Z-00-DX4.BE1980E2-83B2-4E04-A6A4-9B71B15793B5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b329dd15a911b3f280b7cd3f38e188172da4be10 --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX4.BE1980E2-83B2-4E04-A6A4-9B71B15793B5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eedf932e38e6be6d0ab01caa241004094814e2afe1982925bb6a0254067a2845 +size 41610816 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX4.BE1980E2-83B2-4E04-A6A4-9B71B15793B5.svs/mask.npy b/features/TCGA-G2-A2EO-01Z-00-DX4.BE1980E2-83B2-4E04-A6A4-9B71B15793B5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4f82c358f49ccc0f49b3aa6918d01dd67fac89d9 --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX4.BE1980E2-83B2-4E04-A6A4-9B71B15793B5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4a2adeee5935c831dffce8fcc6962b425bb0a39b9cc2d92d3b152454e5d5d49e +size 106814528 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX4.BE1980E2-83B2-4E04-A6A4-9B71B15793B5.svs/metadata.json b/features/TCGA-G2-A2EO-01Z-00-DX4.BE1980E2-83B2-4E04-A6A4-9B71B15793B5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..16cc40a5c31d7b71ababcdbcf97f1c150737de3f --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX4.BE1980E2-83B2-4E04-A6A4-9B71B15793B5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 5072, "total_number_of_tiles": 5072, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97103, 70397], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 9], "5": [24, 18], "6": [48, 35], "7": [95, 69], "8": [190, 138], "9": [380, 275], "10": [759, 550], "11": [1518, 1100], "12": [3035, 2200], "13": [6069, 4400], "14": [12138, 8800], "15": [24276, 17600], "16": [48552, 35199], "17": [97103, 70397]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "516db93551393725d38b52d3cfa6856b7acce9f606461c197fd0c84b653c25da"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EO-01Z-00-DX5.85F4C6CF-E10B-4EF7-B477-D42E9F78247F.svs/features.npy b/features/TCGA-G2-A2EO-01Z-00-DX5.85F4C6CF-E10B-4EF7-B477-D42E9F78247F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4637b0adc009a46869195a5e2efe6d315e4397cf --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX5.85F4C6CF-E10B-4EF7-B477-D42E9F78247F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:269a784eb874919a58d202039d70e15025a76dc8b58f56e4700e645032289bc0 +size 41578000 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX5.85F4C6CF-E10B-4EF7-B477-D42E9F78247F.svs/mask.npy b/features/TCGA-G2-A2EO-01Z-00-DX5.85F4C6CF-E10B-4EF7-B477-D42E9F78247F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..db15d13f02492f2cc515e41af24fe5cfc1ca687e --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX5.85F4C6CF-E10B-4EF7-B477-D42E9F78247F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:344f5a3d5063738458a7b2f34d4f1b2292c09e94a27d8d623f3eb7d4a8ffcc2a +size 177733888 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX5.85F4C6CF-E10B-4EF7-B477-D42E9F78247F.svs/metadata.json b/features/TCGA-G2-A2EO-01Z-00-DX5.85F4C6CF-E10B-4EF7-B477-D42E9F78247F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..abbbaa1673c4252886530d87bcc50c2554148687 --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX5.85F4C6CF-E10B-4EF7-B477-D42E9F78247F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 5068, "total_number_of_tiles": 5068, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [134231, 84734], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [33, 21], "7": [66, 42], "8": [132, 83], "9": [263, 166], "10": [525, 331], "11": [1049, 662], "12": [2098, 1324], "13": [4195, 2648], "14": [8390, 5296], "15": [16779, 10592], "16": [33558, 21184], "17": [67116, 42367], "18": [134231, 84734]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d0d1fa63d1630c829c1562fc5e7daa5e43770e019c0620ff9cb4af078988466b"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EO-01Z-00-DX6.8FBEA23E-DC4C-4420-A72A-FDDC0CC1F80A.svs/features.npy b/features/TCGA-G2-A2EO-01Z-00-DX6.8FBEA23E-DC4C-4420-A72A-FDDC0CC1F80A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..59da97ca5253734c815d76409f7bfc28daf6cce6 --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX6.8FBEA23E-DC4C-4420-A72A-FDDC0CC1F80A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ff2355f2e7fb70523c9172b9031f9c63e393c27d7e7948fae60755a52b477ca5 +size 49896856 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX6.8FBEA23E-DC4C-4420-A72A-FDDC0CC1F80A.svs/mask.npy b/features/TCGA-G2-A2EO-01Z-00-DX6.8FBEA23E-DC4C-4420-A72A-FDDC0CC1F80A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ecd09646065bf035314232bc83ee0c97896f66cb --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX6.8FBEA23E-DC4C-4420-A72A-FDDC0CC1F80A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9b70b8b78b699764397a0cc7892d86825b8edcd9287042597b377eae75f1e16a +size 98389328 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX6.8FBEA23E-DC4C-4420-A72A-FDDC0CC1F80A.svs/metadata.json b/features/TCGA-G2-A2EO-01Z-00-DX6.8FBEA23E-DC4C-4420-A72A-FDDC0CC1F80A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d7f30a1e4908aae0ea1d13ceb8a3ecd7b41b838a --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX6.8FBEA23E-DC4C-4420-A72A-FDDC0CC1F80A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 6082, "total_number_of_tiles": 6082, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [95199, 66133], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 9], "5": [24, 17], "6": [47, 33], "7": [93, 65], "8": [186, 130], "9": [372, 259], "10": [744, 517], "11": [1488, 1034], "12": [2975, 2067], "13": [5950, 4134], "14": [11900, 8267], "15": [23800, 16534], "16": [47600, 33067], "17": [95199, 66133]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1e83f3b891fa4251983598d5912580d418d9eec314cf09edc8c0d4d1b76239ca"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EO-01Z-00-DX7.5784EBED-47AE-4ADA-84F2-3E58965EE2BC.svs/features.npy b/features/TCGA-G2-A2EO-01Z-00-DX7.5784EBED-47AE-4ADA-84F2-3E58965EE2BC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..51057a6c603c2a557e8f11d10d8f14b00bbe0dae --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX7.5784EBED-47AE-4ADA-84F2-3E58965EE2BC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d3c060d18e76549fac82220ffba861a2c0a4f8748c42e7132fdf6f4e747c4784 +size 60578464 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX7.5784EBED-47AE-4ADA-84F2-3E58965EE2BC.svs/mask.npy b/features/TCGA-G2-A2EO-01Z-00-DX7.5784EBED-47AE-4ADA-84F2-3E58965EE2BC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9ac77283fae08bf4b8c2df1923265081f5d379cd --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX7.5784EBED-47AE-4ADA-84F2-3E58965EE2BC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:856a981f31aece925391741bd33512025691ece77f818900b93a26e8ab690376 +size 142898576 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX7.5784EBED-47AE-4ADA-84F2-3E58965EE2BC.svs/metadata.json b/features/TCGA-G2-A2EO-01Z-00-DX7.5784EBED-47AE-4ADA-84F2-3E58965EE2BC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..79edf3f89269554b199feb74cf5bbc01693a9fcf --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX7.5784EBED-47AE-4ADA-84F2-3E58965EE2BC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 7384, "total_number_of_tiles": 7384, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107575, 85002], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 21], "6": [53, 42], "7": [106, 84], "8": [211, 167], "9": [421, 333], "10": [841, 665], "11": [1681, 1329], "12": [3362, 2657], "13": [6724, 5313], "14": [13447, 10626], "15": [26894, 21251], "16": [53788, 42501], "17": [107575, 85002]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e5701254290888bb34b56ff360e12e76087b521160bf48df3b5999e983f8d2d5"} \ No newline at end of file diff --git a/features/TCGA-G2-A2EO-01Z-00-DX8.04D3920F-D1FD-4B37-8229-877FC64C3492.svs/features.npy b/features/TCGA-G2-A2EO-01Z-00-DX8.04D3920F-D1FD-4B37-8229-877FC64C3492.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4f782e20359b8f14f9bdac4a9ed104bc44601a40 --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX8.04D3920F-D1FD-4B37-8229-877FC64C3492.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8d79c2001414042ecd7a27ff7bdc8dea8943cbdca653a1db9089d3d992af9302 +size 93123732 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX8.04D3920F-D1FD-4B37-8229-877FC64C3492.svs/mask.npy b/features/TCGA-G2-A2EO-01Z-00-DX8.04D3920F-D1FD-4B37-8229-877FC64C3492.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..40f01506571da96454e03b088afc5079006b7113 --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX8.04D3920F-D1FD-4B37-8229-877FC64C3492.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fc0dd9a28409ef765679cd17e8eae5684bb3684ee717d6f01714ae098359bdc7 +size 204318236 diff --git a/features/TCGA-G2-A2EO-01Z-00-DX8.04D3920F-D1FD-4B37-8229-877FC64C3492.svs/metadata.json b/features/TCGA-G2-A2EO-01Z-00-DX8.04D3920F-D1FD-4B37-8229-877FC64C3492.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..774c9585f56f50a3dca37683093c17956dfdbac1 --- /dev/null +++ b/features/TCGA-G2-A2EO-01Z-00-DX8.04D3920F-D1FD-4B37-8229-877FC64C3492.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11351, "total_number_of_tiles": 11351, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [136135, 96041], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [34, 24], "7": [67, 47], "8": [133, 94], "9": [266, 188], "10": [532, 376], "11": [1064, 751], "12": [2128, 1501], "13": [4255, 3002], "14": [8509, 6003], "15": [17017, 12006], "16": [34034, 24011], "17": [68068, 48021], "18": [136135, 96041]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a0779ecba3c17e5974ac68f6d432baa9ff63a8ef81c27d6d970fc89b4edc26be"} \ No newline at end of file diff --git a/features/TCGA-G2-A2ES-01Z-00-DX1.B80524C7-9705-461E-852E-DA99575FABF0.svs/features.npy b/features/TCGA-G2-A2ES-01Z-00-DX1.B80524C7-9705-461E-852E-DA99575FABF0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..faf35a1b2b23fd9ea38bcbac652065425be1fcb8 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX1.B80524C7-9705-461E-852E-DA99575FABF0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d9d22d598a27b2b43b3f1d923c175268769d97545c3c62dc0a3a5998ef77d24f +size 194041136 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX1.B80524C7-9705-461E-852E-DA99575FABF0.svs/mask.npy b/features/TCGA-G2-A2ES-01Z-00-DX1.B80524C7-9705-461E-852E-DA99575FABF0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c97040f3756b54b88d7608b2883d1503b81fcd3b --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX1.B80524C7-9705-461E-852E-DA99575FABF0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e76f0ce7562a0316882f71c303923d5d2a88d531160eb56957d176a0c1812b9d +size 150240008 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX1.B80524C7-9705-461E-852E-DA99575FABF0.svs/metadata.json b/features/TCGA-G2-A2ES-01Z-00-DX1.B80524C7-9705-461E-852E-DA99575FABF0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0bfd8fcfef6b5863fa41fd80ccdfb3661da0d016 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX1.B80524C7-9705-461E-852E-DA99575FABF0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23652, "total_number_of_tiles": 23652, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [102815, 93509], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [26, 23], "6": [51, 46], "7": [101, 92], "8": [201, 183], "9": [402, 366], "10": [804, 731], "11": [1607, 1462], "12": [3213, 2923], "13": [6426, 5845], "14": [12852, 11689], "15": [25704, 23378], "16": [51408, 46755], "17": [102815, 93509]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e098c05ac51edf4decf42fd5c2881733"} \ No newline at end of file diff --git a/features/TCGA-G2-A2ES-01Z-00-DX2.CA66A071-D602-41CD-BD39-4AF1FD7BFC43.svs/features.npy b/features/TCGA-G2-A2ES-01Z-00-DX2.CA66A071-D602-41CD-BD39-4AF1FD7BFC43.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0d28d7d34d0d3b112af096db9c182cf618e7f224 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX2.CA66A071-D602-41CD-BD39-4AF1FD7BFC43.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:074079de1d8f4cf4c5516d831017e7ab49a6773245150294a661a35ea1118314 +size 176648656 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX2.CA66A071-D602-41CD-BD39-4AF1FD7BFC43.svs/mask.npy b/features/TCGA-G2-A2ES-01Z-00-DX2.CA66A071-D602-41CD-BD39-4AF1FD7BFC43.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..266b4035b1dbec75795a48eff1442753321f1291 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX2.CA66A071-D602-41CD-BD39-4AF1FD7BFC43.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:00c6302d8e01e92543f8d67350c825b4736fb0fd510f6b84532e592ab7177411 +size 121697912 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX2.CA66A071-D602-41CD-BD39-4AF1FD7BFC43.svs/metadata.json b/features/TCGA-G2-A2ES-01Z-00-DX2.CA66A071-D602-41CD-BD39-4AF1FD7BFC43.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a211d919d14cc458b1c16f03a7f03b6fefbb5d16 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX2.CA66A071-D602-41CD-BD39-4AF1FD7BFC43.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21532, "total_number_of_tiles": 21532, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [90439, 86110], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [23, 22], "6": [45, 43], "7": [89, 85], "8": [177, 169], "9": [354, 337], "10": [707, 673], "11": [1414, 1346], "12": [2827, 2691], "13": [5653, 5382], "14": [11305, 10764], "15": [22610, 21528], "16": [45220, 43055], "17": [90439, 86110]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "eeb1d9ec7fd163594825be968016b80f"} \ No newline at end of file diff --git a/features/TCGA-G2-A2ES-01Z-00-DX3.4127F544-FC83-44F6-85CD-3F1542785E71.svs/features.npy b/features/TCGA-G2-A2ES-01Z-00-DX3.4127F544-FC83-44F6-85CD-3F1542785E71.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..af0213038e7dea9ac0cb5a2785da503832e9150e --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX3.4127F544-FC83-44F6-85CD-3F1542785E71.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dace2c04cb8bcd8f48f2850560b3b53033d92d03fc6921570016b25c8fe2d526 +size 36713028 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX3.4127F544-FC83-44F6-85CD-3F1542785E71.svs/mask.npy b/features/TCGA-G2-A2ES-01Z-00-DX3.4127F544-FC83-44F6-85CD-3F1542785E71.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f59162307f393be9e077597c0fc541f0b8804120 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX3.4127F544-FC83-44F6-85CD-3F1542785E71.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:00d2f44e11e728489cf2f7efd0bb04229c3b788eb24cc6f34b787091d1804efe +size 116387872 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX3.4127F544-FC83-44F6-85CD-3F1542785E71.svs/metadata.json b/features/TCGA-G2-A2ES-01Z-00-DX3.4127F544-FC83-44F6-85CD-3F1542785E71.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..74d2f237eb27e650a948ed6504874f18f950e48c --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX3.4127F544-FC83-44F6-85CD-3F1542785E71.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 4475, "total_number_of_tiles": 4475, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99959, 74500], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [25, 19], "6": [49, 37], "7": [98, 73], "8": [196, 146], "9": [391, 292], "10": [781, 583], "11": [1562, 1165], "12": [3124, 2329], "13": [6248, 4657], "14": [12495, 9313], "15": [24990, 18625], "16": [49980, 37250], "17": [99959, 74500]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4cfa56047a0cc6b416e5ddd5a2141e9dc8e9d33f7ab7372c3a09e26bc521fd5f"} \ No newline at end of file diff --git a/features/TCGA-G2-A2ES-01Z-00-DX4.F8B9CC1E-CDC8-4335-82DD-4BE4F6A35CEF.svs/features.npy b/features/TCGA-G2-A2ES-01Z-00-DX4.F8B9CC1E-CDC8-4335-82DD-4BE4F6A35CEF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1c85180f4c9e7fe9be0cd51c48b74beae0f8bf6c --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX4.F8B9CC1E-CDC8-4335-82DD-4BE4F6A35CEF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6176b74cab363532dec05c2b4bdbfd1a63f6d0abee2aa7f1712eb5407fbcab20 +size 138639524 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX4.F8B9CC1E-CDC8-4335-82DD-4BE4F6A35CEF.svs/mask.npy b/features/TCGA-G2-A2ES-01Z-00-DX4.F8B9CC1E-CDC8-4335-82DD-4BE4F6A35CEF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6f082eed918ba98430944e657646eaa4cf43debc --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX4.F8B9CC1E-CDC8-4335-82DD-4BE4F6A35CEF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dd5bedd15b6174c3f7efab08b12f95d5cbee3cb3d749781677dddd2ecaaa6216 +size 146261600 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX4.F8B9CC1E-CDC8-4335-82DD-4BE4F6A35CEF.svs/metadata.json b/features/TCGA-G2-A2ES-01Z-00-DX4.F8B9CC1E-CDC8-4335-82DD-4BE4F6A35CEF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f6f52f41735c0c478bc846374440a4a6efa1c773 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX4.F8B9CC1E-CDC8-4335-82DD-4BE4F6A35CEF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16899, "total_number_of_tiles": 16899, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [106623, 87784], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 22], "6": [53, 43], "7": [105, 86], "8": [209, 172], "9": [417, 343], "10": [833, 686], "11": [1666, 1372], "12": [3332, 2744], "13": [6664, 5487], "14": [13328, 10973], "15": [26656, 21946], "16": [53312, 43892], "17": [106623, 87784]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "82869434850418546baf3f1d22f1ddb3"} \ No newline at end of file diff --git a/features/TCGA-G2-A2ES-01Z-00-DX5.3576FA08-47B1-4A10-94F1-5F5A57A7835E.svs/features.npy b/features/TCGA-G2-A2ES-01Z-00-DX5.3576FA08-47B1-4A10-94F1-5F5A57A7835E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1acd3dc59d3ceed0b4f05c5d07da81bed744822f --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX5.3576FA08-47B1-4A10-94F1-5F5A57A7835E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8836b1b46dd1c6fb2cfcddcfda5b06193a0028dce6d0e6ec926f904344faa1ab +size 162102964 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX5.3576FA08-47B1-4A10-94F1-5F5A57A7835E.svs/mask.npy b/features/TCGA-G2-A2ES-01Z-00-DX5.3576FA08-47B1-4A10-94F1-5F5A57A7835E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1650bbc0273415c1b45a26a6a31cd392508ad6ee --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX5.3576FA08-47B1-4A10-94F1-5F5A57A7835E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9d5e04ed8aa7ec77f40a325b347a491b04571f3353f0e0aa3418fee60dcb4aed +size 162764996 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX5.3576FA08-47B1-4A10-94F1-5F5A57A7835E.svs/metadata.json b/features/TCGA-G2-A2ES-01Z-00-DX5.3576FA08-47B1-4A10-94F1-5F5A57A7835E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f76e2c625dcf0fe5ea8f9299e958eb1b18ead058 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX5.3576FA08-47B1-4A10-94F1-5F5A57A7835E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19759, "total_number_of_tiles": 19759, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [108527, 95979], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 24], "6": [53, 47], "7": [106, 94], "8": [212, 188], "9": [424, 375], "10": [848, 750], "11": [1696, 1500], "12": [3392, 3000], "13": [6783, 5999], "14": [13566, 11998], "15": [27132, 23995], "16": [54264, 47990], "17": [108527, 95979]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0979a0b7526d962b538007295ebf9f7f"} \ No newline at end of file diff --git a/features/TCGA-G2-A2ES-01Z-00-DX6.FF3254DB-03CE-48A3-8C68-E0BAE60694F6.svs/features.npy b/features/TCGA-G2-A2ES-01Z-00-DX6.FF3254DB-03CE-48A3-8C68-E0BAE60694F6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..890d910414ec039bdf8647756c4b8a5892e203d1 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX6.FF3254DB-03CE-48A3-8C68-E0BAE60694F6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b3bd15b3e83d81219fb0ff0283d4c3b21c5d82a03f4c4c20aabd2d6215962856 +size 136498280 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX6.FF3254DB-03CE-48A3-8C68-E0BAE60694F6.svs/mask.npy b/features/TCGA-G2-A2ES-01Z-00-DX6.FF3254DB-03CE-48A3-8C68-E0BAE60694F6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a2cbeac88d97c8ff30636a4309c3a1ec71aa9545 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX6.FF3254DB-03CE-48A3-8C68-E0BAE60694F6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:319c8026acebb822adff2147e87fcd97bc3158271adf901aaac6e095ea06ea8c +size 128933296 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX6.FF3254DB-03CE-48A3-8C68-E0BAE60694F6.svs/metadata.json b/features/TCGA-G2-A2ES-01Z-00-DX6.FF3254DB-03CE-48A3-8C68-E0BAE60694F6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..85ffc671722bb76f402f42be58d453902c6d8903 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX6.FF3254DB-03CE-48A3-8C68-E0BAE60694F6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16638, "total_number_of_tiles": 16638, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99007, 83343], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [25, 21], "6": [49, 41], "7": [97, 82], "8": [194, 163], "9": [387, 326], "10": [774, 652], "11": [1547, 1303], "12": [3094, 2605], "13": [6188, 5209], "14": [12376, 10418], "15": [24752, 20836], "16": [49504, 41672], "17": [99007, 83343]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "51457ecef27c5da117fd55e67f1ffca8"} \ No newline at end of file diff --git a/features/TCGA-G2-A2ES-01Z-00-DX7.03160CC5-FC81-4A8D-96D4-BCEBADCDF599.svs/features.npy b/features/TCGA-G2-A2ES-01Z-00-DX7.03160CC5-FC81-4A8D-96D4-BCEBADCDF599.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e7d9d013e039a68f3adab9884c1af40da027f257 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX7.03160CC5-FC81-4A8D-96D4-BCEBADCDF599.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a25ee1eaeaecaec2f16c4c59e61ef6b2e5020d96667cb1850e0a17c78ba2c348 +size 89505768 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX7.03160CC5-FC81-4A8D-96D4-BCEBADCDF599.svs/mask.npy b/features/TCGA-G2-A2ES-01Z-00-DX7.03160CC5-FC81-4A8D-96D4-BCEBADCDF599.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5c77389867cb6619c25512c8e22199ba94cecb34 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX7.03160CC5-FC81-4A8D-96D4-BCEBADCDF599.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:999346051303533a20c4e8b1c370bebb3f78951359acfd037d3ec05c28f82ae9 +size 104331896 diff --git a/features/TCGA-G2-A2ES-01Z-00-DX7.03160CC5-FC81-4A8D-96D4-BCEBADCDF599.svs/metadata.json b/features/TCGA-G2-A2ES-01Z-00-DX7.03160CC5-FC81-4A8D-96D4-BCEBADCDF599.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..72a0ad22775f4d723f996d6e515cf6ff9f708636 --- /dev/null +++ b/features/TCGA-G2-A2ES-01Z-00-DX7.03160CC5-FC81-4A8D-96D4-BCEBADCDF599.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10910, "total_number_of_tiles": 10910, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [90439, 73822], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [23, 19], "6": [45, 37], "7": [89, 73], "8": [177, 145], "9": [354, 289], "10": [707, 577], "11": [1414, 1154], "12": [2827, 2307], "13": [5653, 4614], "14": [11305, 9228], "15": [22610, 18456], "16": [45220, 36911], "17": [90439, 73822]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f6c116c38b801677d4131505ab32bd6efe443a855b1e24707943f296dfb2bcd1"} \ No newline at end of file diff --git a/features/TCGA-G2-A3IB-01Z-00-DX1.27F44B48-11D5-438D-B568-E099C05AD428.svs/features.npy b/features/TCGA-G2-A3IB-01Z-00-DX1.27F44B48-11D5-438D-B568-E099C05AD428.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6ff3faab148850e90a3acfaebb75fd9eb810a895 --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX1.27F44B48-11D5-438D-B568-E099C05AD428.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fce17527a51f9257f1d636a2e91fbe86b3d00c4adb934122bf1c805b9cad1222 +size 140649504 diff --git a/features/TCGA-G2-A3IB-01Z-00-DX1.27F44B48-11D5-438D-B568-E099C05AD428.svs/mask.npy b/features/TCGA-G2-A3IB-01Z-00-DX1.27F44B48-11D5-438D-B568-E099C05AD428.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e55500a75b19567f6453aa45e5ea303f7da5d38a --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX1.27F44B48-11D5-438D-B568-E099C05AD428.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a69d7eea9dadaafaf1ea34a217d05979e6ab813b53b46a497093e686e8b34a1e +size 134981828 diff --git a/features/TCGA-G2-A3IB-01Z-00-DX1.27F44B48-11D5-438D-B568-E099C05AD428.svs/metadata.json b/features/TCGA-G2-A3IB-01Z-00-DX1.27F44B48-11D5-438D-B568-E099C05AD428.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5a6916d3997d9414a27b9dacb9845bd7906a83ec --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX1.27F44B48-11D5-438D-B568-E099C05AD428.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17144, "total_number_of_tiles": 17144, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [108527, 79597], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 20], "6": [53, 39], "7": [106, 78], "8": [212, 156], "9": [424, 311], "10": [848, 622], "11": [1696, 1244], "12": [3392, 2488], "13": [6783, 4975], "14": [13566, 9950], "15": [27132, 19900], "16": [54264, 39799], "17": [108527, 79597]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7de609d147f059060e98e7aa5734c281"} \ No newline at end of file diff --git a/features/TCGA-G2-A3IB-01Z-00-DX2.233CCEF1-7332-4940-84A6-7CD6ADE8272E.svs/features.npy b/features/TCGA-G2-A3IB-01Z-00-DX2.233CCEF1-7332-4940-84A6-7CD6ADE8272E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c37ea1326c6e31aade738e9f8b7ad602f648573d --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX2.233CCEF1-7332-4940-84A6-7CD6ADE8272E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cfb0045fd7f3036dda86f5d0c75085c6a9182857c5e9214b11408761861dbeb4 +size 144817136 diff --git a/features/TCGA-G2-A3IB-01Z-00-DX2.233CCEF1-7332-4940-84A6-7CD6ADE8272E.svs/mask.npy b/features/TCGA-G2-A3IB-01Z-00-DX2.233CCEF1-7332-4940-84A6-7CD6ADE8272E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8008e970860cb65ebbdb12b4f6832ae3d7c3cd22 --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX2.233CCEF1-7332-4940-84A6-7CD6ADE8272E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:16f0fa771bd621cb78fef3edc12416cc5f48d4ad8bb5ca36754760c697efec36 +size 166661440 diff --git a/features/TCGA-G2-A3IB-01Z-00-DX2.233CCEF1-7332-4940-84A6-7CD6ADE8272E.svs/metadata.json b/features/TCGA-G2-A3IB-01Z-00-DX2.233CCEF1-7332-4940-84A6-7CD6ADE8272E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..09389aac95debf678d6267063bf96003272ef4a9 --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX2.233CCEF1-7332-4940-84A6-7CD6ADE8272E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17652, "total_number_of_tiles": 17652, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [122807, 86837], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [30, 22], "6": [60, 43], "7": [120, 85], "8": [240, 170], "9": [480, 340], "10": [960, 679], "11": [1919, 1357], "12": [3838, 2714], "13": [7676, 5428], "14": [15351, 10855], "15": [30702, 21710], "16": [61404, 43419], "17": [122807, 86837]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "457603ec665c4be732922fa936e1c8ec"} \ No newline at end of file diff --git a/features/TCGA-G2-A3IB-01Z-00-DX3.87062FFE-72F3-48E0-A9CD-71F5FF3819D3.svs/features.npy b/features/TCGA-G2-A3IB-01Z-00-DX3.87062FFE-72F3-48E0-A9CD-71F5FF3819D3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..56fa1024be586c3f2085f5a1764f4cfe16bd64e2 --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX3.87062FFE-72F3-48E0-A9CD-71F5FF3819D3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d589b74c63d538c352fa98f27557aa923341c2246b57f6955dae880bf39a9ab2 +size 184204540 diff --git a/features/TCGA-G2-A3IB-01Z-00-DX3.87062FFE-72F3-48E0-A9CD-71F5FF3819D3.svs/mask.npy b/features/TCGA-G2-A3IB-01Z-00-DX3.87062FFE-72F3-48E0-A9CD-71F5FF3819D3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4e729dd86038a74a57609bd4732d6334dda348e5 --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX3.87062FFE-72F3-48E0-A9CD-71F5FF3819D3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3354e1fa616fd0d3ccfc8284c96631015b1a4f8afd766bda26f785bb50f64765 +size 167932452 diff --git a/features/TCGA-G2-A3IB-01Z-00-DX3.87062FFE-72F3-48E0-A9CD-71F5FF3819D3.svs/metadata.json b/features/TCGA-G2-A3IB-01Z-00-DX3.87062FFE-72F3-48E0-A9CD-71F5FF3819D3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7466ac78fd94b34f147e50a63aa5d37eed023600 --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX3.87062FFE-72F3-48E0-A9CD-71F5FF3819D3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22453, "total_number_of_tiles": 22453, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135183, 79494], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [17, 10], "6": [34, 20], "7": [67, 39], "8": [133, 78], "9": [265, 156], "10": [529, 311], "11": [1057, 622], "12": [2113, 1243], "13": [4225, 2485], "14": [8449, 4969], "15": [16898, 9937], "16": [33796, 19874], "17": [67592, 39747], "18": [135183, 79494]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4d9a08c1a46a2be9ae664518bbcd3a42b7015b7f54b35d81238c3b80773594e3"} \ No newline at end of file diff --git a/features/TCGA-G2-A3IB-01Z-00-DX4.2AECF9F2-3DC4-4474-9D1D-13B40EC9DBDD.svs/features.npy b/features/TCGA-G2-A3IB-01Z-00-DX4.2AECF9F2-3DC4-4474-9D1D-13B40EC9DBDD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..87b55ef9efa6429190fb443fe6e24e33299d7d8d --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX4.2AECF9F2-3DC4-4474-9D1D-13B40EC9DBDD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9cbeb6499be9626ef042e286ef05375e65fddf0e26b4286cf5ae137da90b45e4 +size 49199516 diff --git a/features/TCGA-G2-A3IB-01Z-00-DX4.2AECF9F2-3DC4-4474-9D1D-13B40EC9DBDD.svs/mask.npy b/features/TCGA-G2-A3IB-01Z-00-DX4.2AECF9F2-3DC4-4474-9D1D-13B40EC9DBDD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c093d7538aa06ed32ef7e93d039290db7b4acc2d --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX4.2AECF9F2-3DC4-4474-9D1D-13B40EC9DBDD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:35c04a3bed1cb1509af5c407fbfb9ffd5e782269d08d0b988b6b5336c54913d4 +size 112127208 diff --git a/features/TCGA-G2-A3IB-01Z-00-DX4.2AECF9F2-3DC4-4474-9D1D-13B40EC9DBDD.svs/metadata.json b/features/TCGA-G2-A3IB-01Z-00-DX4.2AECF9F2-3DC4-4474-9D1D-13B40EC9DBDD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..93d533e103c89c8034a65ca13498872df1448196 --- /dev/null +++ b/features/TCGA-G2-A3IB-01Z-00-DX4.2AECF9F2-3DC4-4474-9D1D-13B40EC9DBDD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 5997, "total_number_of_tiles": 5997, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [117095, 61269], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [8, 4], "4": [15, 8], "5": [29, 15], "6": [58, 30], "7": [115, 60], "8": [229, 120], "9": [458, 240], "10": [915, 479], "11": [1830, 958], "12": [3660, 1915], "13": [7319, 3830], "14": [14637, 7659], "15": [29274, 15318], "16": [58548, 30635], "17": [117095, 61269]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "70ac853d7ff06aff903274e6ffa6c65e8e7ac4f8a48bef08607e4c322fb4278c"} \ No newline at end of file diff --git a/features/TCGA-G2-A3IE-01Z-00-DX1.DEEF9D35-CE4C-499F-9481-9E9E379694FC.svs/features.npy b/features/TCGA-G2-A3IE-01Z-00-DX1.DEEF9D35-CE4C-499F-9481-9E9E379694FC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..aed7e17341761613c224ec4e13ee5ffab6e060e1 --- /dev/null +++ b/features/TCGA-G2-A3IE-01Z-00-DX1.DEEF9D35-CE4C-499F-9481-9E9E379694FC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bce1cdcd78c6fb37aa661e5d17c49d676426055a165bd29666ab178bfa01a389 +size 265752300 diff --git a/features/TCGA-G2-A3IE-01Z-00-DX1.DEEF9D35-CE4C-499F-9481-9E9E379694FC.svs/mask.npy b/features/TCGA-G2-A3IE-01Z-00-DX1.DEEF9D35-CE4C-499F-9481-9E9E379694FC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b2c64814cfe4c153a710a304770bd5057c8c5d06 --- /dev/null +++ b/features/TCGA-G2-A3IE-01Z-00-DX1.DEEF9D35-CE4C-499F-9481-9E9E379694FC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a9640298b821538c146394cd4a62f7a79482f82b6074f5dc462bc5e516c9b796 +size 230177068 diff --git a/features/TCGA-G2-A3IE-01Z-00-DX1.DEEF9D35-CE4C-499F-9481-9E9E379694FC.svs/metadata.json b/features/TCGA-G2-A3IE-01Z-00-DX1.DEEF9D35-CE4C-499F-9481-9E9E379694FC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d12411de7dde2b35cc9b5d23ea7edbf6ae310c10 --- /dev/null +++ b/features/TCGA-G2-A3IE-01Z-00-DX1.DEEF9D35-CE4C-499F-9481-9E9E379694FC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32393, "total_number_of_tiles": 32393, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [161839, 91021], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [20, 12], "6": [40, 23], "7": [80, 45], "8": [159, 89], "9": [317, 178], "10": [633, 356], "11": [1265, 712], "12": [2529, 1423], "13": [5058, 2845], "14": [10115, 5689], "15": [20230, 11378], "16": [40460, 22756], "17": [80920, 45511], "18": [161839, 91021]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9b33a301e39d7ca2f8b3d0ec6ddae06c82e3f8757658133a193fc698519600d0"} \ No newline at end of file diff --git a/features/TCGA-G2-A3IE-01Z-00-DX2.48A6B225-8608-41A5-9268-63262105DDED.svs/features.npy b/features/TCGA-G2-A3IE-01Z-00-DX2.48A6B225-8608-41A5-9268-63262105DDED.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ac7a447426074e0eb619e0a26b9c61ab5946b7b6 --- /dev/null +++ b/features/TCGA-G2-A3IE-01Z-00-DX2.48A6B225-8608-41A5-9268-63262105DDED.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:de539142fb2407f50289a4648f42be135aec99af70cf2645e786bb0cce469615 +size 167517604 diff --git a/features/TCGA-G2-A3IE-01Z-00-DX2.48A6B225-8608-41A5-9268-63262105DDED.svs/mask.npy b/features/TCGA-G2-A3IE-01Z-00-DX2.48A6B225-8608-41A5-9268-63262105DDED.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a2b99b48ad06d414ba0724fc4467aed280811622 --- /dev/null +++ b/features/TCGA-G2-A3IE-01Z-00-DX2.48A6B225-8608-41A5-9268-63262105DDED.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9d3368f57333515524fa25e3c970f9bd95ce3e5728f95745ec8d996b4b8ff52b +size 162862388 diff --git a/features/TCGA-G2-A3IE-01Z-00-DX2.48A6B225-8608-41A5-9268-63262105DDED.svs/metadata.json b/features/TCGA-G2-A3IE-01Z-00-DX2.48A6B225-8608-41A5-9268-63262105DDED.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d14fe6c726aefbdfe2f9a46aeddb3307f7a3c811 --- /dev/null +++ b/features/TCGA-G2-A3IE-01Z-00-DX2.48A6B225-8608-41A5-9268-63262105DDED.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20419, "total_number_of_tiles": 20419, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [136135, 76547], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [17, 10], "6": [34, 19], "7": [67, 38], "8": [133, 75], "9": [266, 150], "10": [532, 300], "11": [1064, 599], "12": [2128, 1197], "13": [4255, 2393], "14": [8509, 4785], "15": [17017, 9569], "16": [34034, 19137], "17": [68068, 38274], "18": [136135, 76547]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d438ad991b81b471167375d8e9a1b56dec92138fc5b72d755ead1b75d1aae0b2"} \ No newline at end of file diff --git a/features/TCGA-G2-A3VY-01Z-00-DX1.E571536B-7C5A-48DC-9CED-5ACA78DDD43F.svs/features.npy b/features/TCGA-G2-A3VY-01Z-00-DX1.E571536B-7C5A-48DC-9CED-5ACA78DDD43F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..38693d5b66afafa3f95033f1a2794dd71e4277d3 --- /dev/null +++ b/features/TCGA-G2-A3VY-01Z-00-DX1.E571536B-7C5A-48DC-9CED-5ACA78DDD43F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:597cdf75438158944ce572e2b79e7ee1aa4c3e991ce777b2c4bc711f3d0956bc +size 97020632 diff --git a/features/TCGA-G2-A3VY-01Z-00-DX1.E571536B-7C5A-48DC-9CED-5ACA78DDD43F.svs/mask.npy b/features/TCGA-G2-A3VY-01Z-00-DX1.E571536B-7C5A-48DC-9CED-5ACA78DDD43F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d6462e5394fa47d357bd464178d8baaa45996c45 --- /dev/null +++ b/features/TCGA-G2-A3VY-01Z-00-DX1.E571536B-7C5A-48DC-9CED-5ACA78DDD43F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:300dab028f8853767b2f0dfa674204c15a44517dc381d6f0d1391ec55d3c0064 +size 108385328 diff --git a/features/TCGA-G2-A3VY-01Z-00-DX1.E571536B-7C5A-48DC-9CED-5ACA78DDD43F.svs/metadata.json b/features/TCGA-G2-A3VY-01Z-00-DX1.E571536B-7C5A-48DC-9CED-5ACA78DDD43F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7cc1720a01241bb67a0edd8adc0447d18ddad064 --- /dev/null +++ b/features/TCGA-G2-A3VY-01Z-00-DX1.E571536B-7C5A-48DC-9CED-5ACA78DDD43F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11826, "total_number_of_tiles": 11826, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [87584, 79197], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 10], "5": [22, 20], "6": [43, 39], "7": [86, 78], "8": [172, 155], "9": [343, 310], "10": [685, 619], "11": [1369, 1238], "12": [2737, 2475], "13": [5474, 4950], "14": [10948, 9900], "15": [21896, 19800], "16": [43792, 39599], "17": [87584, 79197]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "04e9014dda9c69b8ad688fdf3a76c82369d134d48145f3360de569677281ed43"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3B-01Z-00-DX1.F4F8CCF4-E74C-4B07-B385-5E30E0E1BB0D.svs/features.npy b/features/TCGA-G2-AA3B-01Z-00-DX1.F4F8CCF4-E74C-4B07-B385-5E30E0E1BB0D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ceb81d4e54a3f40a5f3406dd61c8c1131c4fecc1 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX1.F4F8CCF4-E74C-4B07-B385-5E30E0E1BB0D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:299e8f62d6bed8f9fdb885867162e58fe8d5bc9c2a9532d63ba5b51fc4068515 +size 112985616 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX1.F4F8CCF4-E74C-4B07-B385-5E30E0E1BB0D.svs/mask.npy b/features/TCGA-G2-AA3B-01Z-00-DX1.F4F8CCF4-E74C-4B07-B385-5E30E0E1BB0D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ee6e54599c1dbea33a95261ff84353bf409e3dc7 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX1.F4F8CCF4-E74C-4B07-B385-5E30E0E1BB0D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9a07a1d8fb6476c012e7761e8323992fa08f9f916e11943642b0d84cdc78ba2a +size 156064352 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX1.F4F8CCF4-E74C-4B07-B385-5E30E0E1BB0D.svs/metadata.json b/features/TCGA-G2-AA3B-01Z-00-DX1.F4F8CCF4-E74C-4B07-B385-5E30E0E1BB0D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..10cbf3407d54e2361159d810e34b9f5980aa2cb7 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX1.F4F8CCF4-E74C-4B07-B385-5E30E0E1BB0D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13772, "total_number_of_tiles": 13772, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125496, 79583], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [31, 20], "6": [62, 39], "7": [123, 78], "8": [246, 156], "9": [491, 311], "10": [981, 622], "11": [1961, 1244], "12": [3922, 2487], "13": [7844, 4974], "14": [15687, 9948], "15": [31374, 19896], "16": [62748, 39792], "17": [125496, 79583]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ed7332628bd50750d94cabbf67ddb8e9"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3B-01Z-00-DX2.B9AC70CF-591B-4AFF-A8C0-F43A9C91CFF9.svs/features.npy b/features/TCGA-G2-AA3B-01Z-00-DX2.B9AC70CF-591B-4AFF-A8C0-F43A9C91CFF9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8c7346fe5b26f2e6b9f54d0ab71af0d2e3c8309c --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX2.B9AC70CF-591B-4AFF-A8C0-F43A9C91CFF9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6352f77e39f2743b73123b24b37fe5722035ec49afb274e6c549c65e1a9f9b96 +size 121632632 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX2.B9AC70CF-591B-4AFF-A8C0-F43A9C91CFF9.svs/mask.npy b/features/TCGA-G2-AA3B-01Z-00-DX2.B9AC70CF-591B-4AFF-A8C0-F43A9C91CFF9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e99beccc4a0ab33204ef6750412d324cebc943aa --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX2.B9AC70CF-591B-4AFF-A8C0-F43A9C91CFF9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:11bb903d5b478defd9c92db104772828dddc7d0c742b5b0d861b14edf8f1171e +size 176268224 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX2.B9AC70CF-591B-4AFF-A8C0-F43A9C91CFF9.svs/metadata.json b/features/TCGA-G2-AA3B-01Z-00-DX2.B9AC70CF-591B-4AFF-A8C0-F43A9C91CFF9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b3ec2d19f14d39052a9f06da0f15f65f89be2162 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX2.B9AC70CF-591B-4AFF-A8C0-F43A9C91CFF9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14826, "total_number_of_tiles": 14826, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [143424, 78655], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [18, 10], "6": [36, 20], "7": [71, 39], "8": [141, 77], "9": [281, 154], "10": [561, 308], "11": [1121, 615], "12": [2241, 1229], "13": [4482, 2458], "14": [8964, 4916], "15": [17928, 9832], "16": [35856, 19664], "17": [71712, 39328], "18": [143424, 78655]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f37e622f4b5c4dac80e16c3d7709db4e1b5904a54cb83815c1c3dda9617d5763"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3B-01Z-00-DX3.A193600C-0B83-4FEB-AB0C-DECF6FC78E1A.svs/features.npy b/features/TCGA-G2-AA3B-01Z-00-DX3.A193600C-0B83-4FEB-AB0C-DECF6FC78E1A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c05962f7da1349acad0178f551e0cc76eebd3d88 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX3.A193600C-0B83-4FEB-AB0C-DECF6FC78E1A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:41cbd0d8130b5afaa3495b86d881f0ebbf744b4d1bd9bbbf34a0a8419f256a03 +size 47082884 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX3.A193600C-0B83-4FEB-AB0C-DECF6FC78E1A.svs/mask.npy b/features/TCGA-G2-AA3B-01Z-00-DX3.A193600C-0B83-4FEB-AB0C-DECF6FC78E1A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..46aae182266d11fd20b8535f081f157d445e2589 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX3.A193600C-0B83-4FEB-AB0C-DECF6FC78E1A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0795937a1f39106b1c6ec5052289cea29b39097666926e7de73009fe6530859e +size 81154208 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX3.A193600C-0B83-4FEB-AB0C-DECF6FC78E1A.svs/metadata.json b/features/TCGA-G2-AA3B-01Z-00-DX3.A193600C-0B83-4FEB-AB0C-DECF6FC78E1A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..18891060d100d27201910b346f3d01a19a7c20c7 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX3.A193600C-0B83-4FEB-AB0C-DECF6FC78E1A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 5739, "total_number_of_tiles": 5739, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [79680, 65180], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [10, 8], "5": [20, 16], "6": [39, 32], "7": [78, 64], "8": [156, 128], "9": [312, 255], "10": [623, 510], "11": [1245, 1019], "12": [2490, 2037], "13": [4980, 4074], "14": [9960, 8148], "15": [19920, 16295], "16": [39840, 32590], "17": [79680, 65180]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2a9a6dea73a66793071e8c2d412b2635153884589d9282d1b3dc1ff684f16379"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3B-01Z-00-DX4.6E70BFE1-D95F-48A9-9897-97322FBA937A.svs/features.npy b/features/TCGA-G2-AA3B-01Z-00-DX4.6E70BFE1-D95F-48A9-9897-97322FBA937A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b69a23d727688e9160a41d01f903b6287b4ceb6b --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX4.6E70BFE1-D95F-48A9-9897-97322FBA937A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cfbec92af3e5bfb5e78996b55308c86e47938bb12670e991adbf4f9f3cae5021 +size 175770828 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX4.6E70BFE1-D95F-48A9-9897-97322FBA937A.svs/mask.npy b/features/TCGA-G2-AA3B-01Z-00-DX4.6E70BFE1-D95F-48A9-9897-97322FBA937A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f0b221f493870536ee18f33cdfff0fa950fef9aa --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX4.6E70BFE1-D95F-48A9-9897-97322FBA937A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e355a4e1f71295225997cb0f4c5c0b4281128f24958f05f95073a9b1bf222ff8 +size 139290728 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX4.6E70BFE1-D95F-48A9-9897-97322FBA937A.svs/metadata.json b/features/TCGA-G2-AA3B-01Z-00-DX4.6E70BFE1-D95F-48A9-9897-97322FBA937A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4c75572222b61b72b3aa45f2f3548513c3b51f84 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX4.6E70BFE1-D95F-48A9-9897-97322FBA937A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21425, "total_number_of_tiles": 21425, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99600, 89501], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [25, 22], "6": [49, 44], "7": [98, 88], "8": [195, 175], "9": [390, 350], "10": [779, 700], "11": [1557, 1399], "12": [3113, 2797], "13": [6225, 5594], "14": [12450, 11188], "15": [24900, 22376], "16": [49800, 44751], "17": [99600, 89501]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bfd8649efef56231b0822273608fc56f"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3B-01Z-00-DX5.57084980-934B-4A4A-A720-24FA2E9E0CB2.svs/features.npy b/features/TCGA-G2-AA3B-01Z-00-DX5.57084980-934B-4A4A-A720-24FA2E9E0CB2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0165f1f869fb186d34fefeaeeb84fa28e9e0cc88 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX5.57084980-934B-4A4A-A720-24FA2E9E0CB2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c6c8e1c895f4d18a096b7bf4d57a38459d90ae48391e1747fb497e137ad607e4 +size 128852152 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX5.57084980-934B-4A4A-A720-24FA2E9E0CB2.svs/mask.npy b/features/TCGA-G2-AA3B-01Z-00-DX5.57084980-934B-4A4A-A720-24FA2E9E0CB2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5d499b9031cda003bf5c4eedae28a6c015774a24 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX5.57084980-934B-4A4A-A720-24FA2E9E0CB2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a0d6e1a0a8098c971f40138cf3ba47fe4303412b284b2dcc61510568e6249b07 +size 140824568 diff --git a/features/TCGA-G2-AA3B-01Z-00-DX5.57084980-934B-4A4A-A720-24FA2E9E0CB2.svs/metadata.json b/features/TCGA-G2-AA3B-01Z-00-DX5.57084980-934B-4A4A-A720-24FA2E9E0CB2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9474094440080fb566b8177c1b64e618d225b7c7 --- /dev/null +++ b/features/TCGA-G2-AA3B-01Z-00-DX5.57084980-934B-4A4A-A720-24FA2E9E0CB2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15706, "total_number_of_tiles": 15706, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119520, 75394], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [30, 19], "6": [59, 37], "7": [117, 74], "8": [234, 148], "9": [467, 295], "10": [934, 590], "11": [1868, 1179], "12": [3735, 2357], "13": [7470, 4713], "14": [14940, 9425], "15": [29880, 18849], "16": [59760, 37697], "17": [119520, 75394]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d665ad1e915ba409ca44d15b796ca04e"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3C-01Z-00-DX1.D2CA01A1-A2F3-4624-A022-BAEA71AA67AC.svs/features.npy b/features/TCGA-G2-AA3C-01Z-00-DX1.D2CA01A1-A2F3-4624-A022-BAEA71AA67AC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..50af96e84f81ae482a6aa1814cc498a8315b86de --- /dev/null +++ b/features/TCGA-G2-AA3C-01Z-00-DX1.D2CA01A1-A2F3-4624-A022-BAEA71AA67AC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:022e1de2bcc8f66b1a43c9285cae0010298da05b5401fb816c59361be9e0044c +size 194451336 diff --git a/features/TCGA-G2-AA3C-01Z-00-DX1.D2CA01A1-A2F3-4624-A022-BAEA71AA67AC.svs/mask.npy b/features/TCGA-G2-AA3C-01Z-00-DX1.D2CA01A1-A2F3-4624-A022-BAEA71AA67AC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8a27098820d386510916110f491cb4431544bb1e --- /dev/null +++ b/features/TCGA-G2-AA3C-01Z-00-DX1.D2CA01A1-A2F3-4624-A022-BAEA71AA67AC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:71c2552b65eba65b2f0b4d68d3c2683c6ca4ff6399fb7444f82f45caa531b203 +size 203054648 diff --git a/features/TCGA-G2-AA3C-01Z-00-DX1.D2CA01A1-A2F3-4624-A022-BAEA71AA67AC.svs/metadata.json b/features/TCGA-G2-AA3C-01Z-00-DX1.D2CA01A1-A2F3-4624-A022-BAEA71AA67AC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8dd0122df6e847e87eb84b4ff3909304bb6b3701 --- /dev/null +++ b/features/TCGA-G2-AA3C-01Z-00-DX1.D2CA01A1-A2F3-4624-A022-BAEA71AA67AC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23702, "total_number_of_tiles": 23702, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [147408, 88151], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 11], "6": [36, 22], "7": [72, 44], "8": [144, 87], "9": [288, 173], "10": [576, 345], "11": [1152, 689], "12": [2304, 1378], "13": [4607, 2755], "14": [9213, 5510], "15": [18426, 11019], "16": [36852, 22038], "17": [73704, 44076], "18": [147408, 88151]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9732eb8491be88c5f073110e67a62d7f6224fa0e728f272f362ec6f954529025"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3C-01Z-00-DX2.00AE9115-F979-4DD6-8364-96493CC00835.svs/features.npy b/features/TCGA-G2-AA3C-01Z-00-DX2.00AE9115-F979-4DD6-8364-96493CC00835.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..44f87326f986182d84b61df852af8db03a2a07b9 --- /dev/null +++ b/features/TCGA-G2-AA3C-01Z-00-DX2.00AE9115-F979-4DD6-8364-96493CC00835.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d2fcdf1bbb9cf11a2d10f5548df13a3abc5976e5c5bc4a77b9dd7b4241de84e5 +size 270264500 diff --git a/features/TCGA-G2-AA3C-01Z-00-DX2.00AE9115-F979-4DD6-8364-96493CC00835.svs/mask.npy b/features/TCGA-G2-AA3C-01Z-00-DX2.00AE9115-F979-4DD6-8364-96493CC00835.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a1c10abbce86d2d984252a35428606af236e9782 --- /dev/null +++ b/features/TCGA-G2-AA3C-01Z-00-DX2.00AE9115-F979-4DD6-8364-96493CC00835.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c5616bf5688beb7ba2b37c3e30c534f5f6b847480f8d27883d1ddc546224f333 +size 198016128 diff --git a/features/TCGA-G2-AA3C-01Z-00-DX2.00AE9115-F979-4DD6-8364-96493CC00835.svs/metadata.json b/features/TCGA-G2-AA3C-01Z-00-DX2.00AE9115-F979-4DD6-8364-96493CC00835.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fb0f437026208b17cefe105441b8a8251edb4b30 --- /dev/null +++ b/features/TCGA-G2-AA3C-01Z-00-DX2.00AE9115-F979-4DD6-8364-96493CC00835.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32943, "total_number_of_tiles": 32943, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [141432, 89585], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 11], "6": [35, 22], "7": [70, 44], "8": [139, 88], "9": [277, 175], "10": [553, 350], "11": [1105, 700], "12": [2210, 1400], "13": [4420, 2800], "14": [8840, 5600], "15": [17679, 11199], "16": [35358, 22397], "17": [70716, 44793], "18": [141432, 89585]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4e5d778af5951407dbe7a59916ae41729a3c108276b5c9a2c73b46619bd2f501"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3D-01Z-00-DX1.8C31FE8D-13F9-49FF-A4FB-2D004B109394.svs/features.npy b/features/TCGA-G2-AA3D-01Z-00-DX1.8C31FE8D-13F9-49FF-A4FB-2D004B109394.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d10f775f95e365719f793128311abf3b8c29f1cd --- /dev/null +++ b/features/TCGA-G2-AA3D-01Z-00-DX1.8C31FE8D-13F9-49FF-A4FB-2D004B109394.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c4826a6ed16239722e8ae9329164f5253d901cb572ad8f83ba924c34a99b0587 +size 16736288 diff --git a/features/TCGA-G2-AA3D-01Z-00-DX1.8C31FE8D-13F9-49FF-A4FB-2D004B109394.svs/mask.npy b/features/TCGA-G2-AA3D-01Z-00-DX1.8C31FE8D-13F9-49FF-A4FB-2D004B109394.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b3bd1ac6ed26bbaeb28ecc5db657b97a1ef3a189 --- /dev/null +++ b/features/TCGA-G2-AA3D-01Z-00-DX1.8C31FE8D-13F9-49FF-A4FB-2D004B109394.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1bb56ee3f4c756d7e5c23386f2ba7fbac6432fd70dfd975c61016f47d7552c89 +size 31254608 diff --git a/features/TCGA-G2-AA3D-01Z-00-DX1.8C31FE8D-13F9-49FF-A4FB-2D004B109394.svs/metadata.json b/features/TCGA-G2-AA3D-01Z-00-DX1.8C31FE8D-13F9-49FF-A4FB-2D004B109394.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0c931477fec16aa1827035ac36c0deaaca82cc1a --- /dev/null +++ b/features/TCGA-G2-AA3D-01Z-00-DX1.8C31FE8D-13F9-49FF-A4FB-2D004B109394.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 2040, "total_number_of_tiles": 2040, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [59760, 33465], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 9], "5": [30, 17], "6": [59, 33], "7": [117, 66], "8": [234, 131], "9": [467, 262], "10": [934, 523], "11": [1868, 1046], "12": [3735, 2092], "13": [7470, 4184], "14": [14940, 8367], "15": [29880, 16733], "16": [59760, 33465]}, "level_mpp_mapping": {"0": 16547.84, "1": 8273.92, "2": 4136.96, "3": 2068.48, "4": 1034.24, "5": 517.12, "6": 258.56, "7": 129.28, "8": 64.64, "9": 32.32, "10": 16.16, "11": 8.08, "12": 4.04, "13": 2.02, "14": 1.01, "15": 0.505, "16": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3f6b75cfc453b4145c336bd1ed9e36fc480f2a0ff79271341fb59125931c3fc1"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3F-01Z-00-DX1.C63054C3-6DBF-42A1-ADA3-79FF26ED02B3.svs/features.npy b/features/TCGA-G2-AA3F-01Z-00-DX1.C63054C3-6DBF-42A1-ADA3-79FF26ED02B3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..30ef1f9c461f0b9554b6b99de5c33d8479a3d8a7 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX1.C63054C3-6DBF-42A1-ADA3-79FF26ED02B3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:58d4dc3a7b01bd2d7ca8a18cc867c6288f4d311602c43a648ac657c6ceb79df3 +size 198725620 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX1.C63054C3-6DBF-42A1-ADA3-79FF26ED02B3.svs/mask.npy b/features/TCGA-G2-AA3F-01Z-00-DX1.C63054C3-6DBF-42A1-ADA3-79FF26ED02B3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..beb502c9e9110422d7bb9c6b32e2b276258d1909 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX1.C63054C3-6DBF-42A1-ADA3-79FF26ED02B3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:101d0ef9c2823f1315d875f330d72fe0c76a353c1c556d52e0f705b0dfc5d763 +size 177981384 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX1.C63054C3-6DBF-42A1-ADA3-79FF26ED02B3.svs/metadata.json b/features/TCGA-G2-AA3F-01Z-00-DX1.C63054C3-6DBF-42A1-ADA3-79FF26ED02B3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..29977d71ec169bbaae3efc55e80bb795d64d2c92 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX1.C63054C3-6DBF-42A1-ADA3-79FF26ED02B3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24223, "total_number_of_tiles": 24223, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129480, 87953], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 22], "6": [64, 43], "7": [127, 86], "8": [253, 172], "9": [506, 344], "10": [1012, 688], "11": [2024, 1375], "12": [4047, 2749], "13": [8093, 5498], "14": [16185, 10995], "15": [32370, 21989], "16": [64740, 43977], "17": [129480, 87953]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c272d44fadb334a7f66e7b3a7dbe8fba"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3F-01Z-00-DX2.8991BE4B-303B-4177-9046-2D6412D0698E.svs/features.npy b/features/TCGA-G2-AA3F-01Z-00-DX2.8991BE4B-303B-4177-9046-2D6412D0698E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3095b863f4edeb2324a36463a3d0854513f03ad7 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX2.8991BE4B-303B-4177-9046-2D6412D0698E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a7c2022c6ca3264c2f950a7895dd8fb23c154a86d431dd32396dc9d095eeacc +size 259148080 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX2.8991BE4B-303B-4177-9046-2D6412D0698E.svs/mask.npy b/features/TCGA-G2-AA3F-01Z-00-DX2.8991BE4B-303B-4177-9046-2D6412D0698E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4ed67204f66544ba5f649df5cb681722fdfbd3ef --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX2.8991BE4B-303B-4177-9046-2D6412D0698E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8588c6c854086ae80716c5f5a2677b605c18f1526239402310277bc103f59cde +size 192404164 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX2.8991BE4B-303B-4177-9046-2D6412D0698E.svs/metadata.json b/features/TCGA-G2-AA3F-01Z-00-DX2.8991BE4B-303B-4177-9046-2D6412D0698E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..252ad6786cef57b5d7cd5fc0ba772f9c4518f69d --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX2.8991BE4B-303B-4177-9046-2D6412D0698E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31588, "total_number_of_tiles": 31588, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [137448, 89580], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [34, 22], "7": [68, 44], "8": [135, 88], "9": [269, 175], "10": [537, 350], "11": [1074, 700], "12": [2148, 1400], "13": [4296, 2800], "14": [8591, 5599], "15": [17181, 11198], "16": [34362, 22395], "17": [68724, 44790], "18": [137448, 89580]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "6ed87282d15e09b6218604ed57ca704c2f2e70f7c5356e2a25b6918c2b626fe2"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.svs/features.npy b/features/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7e39aee142735b321711b3c1d08523a5c5b1591e --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:059ecf5d9db5fcd437b5271363545df410b96f64672cfefced63fcb3c7fe5d44 +size 243814804 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.svs/mask.npy b/features/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..551ed76f331fc680add5785c2e6180de9a217a3f --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f8383eb67defeb34a369b2b12bd34a881f0990d3e4dca2335f2e961a8ee37b6 +size 178419584 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.svs/metadata.json b/features/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bc4f11bc4317f65d603c888bff46b2acf7403037 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29719, "total_number_of_tiles": 29719, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [127488, 89559], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 22], "6": [63, 44], "7": [125, 88], "8": [249, 175], "9": [498, 350], "10": [996, 700], "11": [1992, 1400], "12": [3984, 2799], "13": [7968, 5598], "14": [15936, 11195], "15": [31872, 22390], "16": [63744, 44780], "17": [127488, 89559]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "cfdf3d2dafb483702169dd38caf38d25"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3F-01Z-00-DX4.8DD53108-E08F-4F3C-80EE-E31D934B9BDF.svs/features.npy b/features/TCGA-G2-AA3F-01Z-00-DX4.8DD53108-E08F-4F3C-80EE-E31D934B9BDF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0141851a90ca584d7586f2ab893af8a718c14b3f --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX4.8DD53108-E08F-4F3C-80EE-E31D934B9BDF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3a8935da7431febdf15a175760e4d17248d638f111b6ea03490c5342e1bf1fa9 +size 245627888 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX4.8DD53108-E08F-4F3C-80EE-E31D934B9BDF.svs/mask.npy b/features/TCGA-G2-AA3F-01Z-00-DX4.8DD53108-E08F-4F3C-80EE-E31D934B9BDF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ba5c61397426dbd1e907b47ad76657ad35ac1bc9 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX4.8DD53108-E08F-4F3C-80EE-E31D934B9BDF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d552a3d623bc7f09f9eb35dd1075fa88ff508eb6ff3e5947e88a026867b3ae66 +size 209678048 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX4.8DD53108-E08F-4F3C-80EE-E31D934B9BDF.svs/metadata.json b/features/TCGA-G2-AA3F-01Z-00-DX4.8DD53108-E08F-4F3C-80EE-E31D934B9BDF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7cd7b11c42ea76fc0f6264efc5495b2545719d35 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX4.8DD53108-E08F-4F3C-80EE-E31D934B9BDF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29940, "total_number_of_tiles": 29940, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [151392, 88640], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [19, 11], "6": [37, 22], "7": [74, 44], "8": [148, 87], "9": [296, 174], "10": [592, 347], "11": [1183, 693], "12": [2366, 1385], "13": [4731, 2770], "14": [9462, 5540], "15": [18924, 11080], "16": [37848, 22160], "17": [75696, 44320], "18": [151392, 88640]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "23f5fdd789957e220c546dfe505ded624aee8511e5ceecdd4de8255f9d9825ea"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3F-01Z-00-DX5.A1D2BBD8-A1B6-46E1-8D22-C897019DB41F.svs/features.npy b/features/TCGA-G2-AA3F-01Z-00-DX5.A1D2BBD8-A1B6-46E1-8D22-C897019DB41F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f448340d9b95cfe2c0f97b809e829fca793db4c0 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX5.A1D2BBD8-A1B6-46E1-8D22-C897019DB41F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8d5f5c0932f3c97953292fe8e4dcff41f492e9e05fee9f35a572b47f560473dc +size 217668656 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX5.A1D2BBD8-A1B6-46E1-8D22-C897019DB41F.svs/mask.npy b/features/TCGA-G2-AA3F-01Z-00-DX5.A1D2BBD8-A1B6-46E1-8D22-C897019DB41F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..fb5fd155ea99d44d2cc807a761e790688d0704f0 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX5.A1D2BBD8-A1B6-46E1-8D22-C897019DB41F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7617f822939c3abc00664911e73519ec59100b4f27e96d845a2d09fda9ca0451 +size 198016128 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX5.A1D2BBD8-A1B6-46E1-8D22-C897019DB41F.svs/metadata.json b/features/TCGA-G2-AA3F-01Z-00-DX5.A1D2BBD8-A1B6-46E1-8D22-C897019DB41F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a4bb94438c3ff425a3ad7dd1786192c829a534d2 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX5.A1D2BBD8-A1B6-46E1-8D22-C897019DB41F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26532, "total_number_of_tiles": 26532, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [141432, 89587], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 11], "6": [35, 22], "7": [70, 44], "8": [139, 88], "9": [277, 175], "10": [553, 350], "11": [1105, 700], "12": [2210, 1400], "13": [4420, 2800], "14": [8840, 5600], "15": [17679, 11199], "16": [35358, 22397], "17": [70716, 44794], "18": [141432, 89587]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "28b118ceddd8873472e7729f480560eb41b6e3982a63bd31b5f39e2695b93c0c"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3F-01Z-00-DX6.AD188C41-F5A7-49ED-9C1A-F7E956A34AC5.svs/features.npy b/features/TCGA-G2-AA3F-01Z-00-DX6.AD188C41-F5A7-49ED-9C1A-F7E956A34AC5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6df3cd058c397935f6c7ff70f089556f0ce43fad --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX6.AD188C41-F5A7-49ED-9C1A-F7E956A34AC5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d4c514b235cf63c36325cf93b440cc6a476e77243f42483dea999e5860aa9c60 +size 228276428 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX6.AD188C41-F5A7-49ED-9C1A-F7E956A34AC5.svs/mask.npy b/features/TCGA-G2-AA3F-01Z-00-DX6.AD188C41-F5A7-49ED-9C1A-F7E956A34AC5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3365f7e6ccb8c06c0adb125ad798b36fae04d7ca --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX6.AD188C41-F5A7-49ED-9C1A-F7E956A34AC5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9001687095ea103c403c01284611108cae2e0136ae8a00c4db0c370fca35fd65 +size 189604664 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX6.AD188C41-F5A7-49ED-9C1A-F7E956A34AC5.svs/metadata.json b/features/TCGA-G2-AA3F-01Z-00-DX6.AD188C41-F5A7-49ED-9C1A-F7E956A34AC5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5439925fbc1476f87b0d7037500f88c4b97b6767 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX6.AD188C41-F5A7-49ED-9C1A-F7E956A34AC5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 27825, "total_number_of_tiles": 27825, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135456, 89573], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [34, 22], "7": [67, 44], "8": [133, 88], "9": [265, 175], "10": [530, 350], "11": [1059, 700], "12": [2117, 1400], "13": [4233, 2800], "14": [8466, 5599], "15": [16932, 11197], "16": [33864, 22394], "17": [67728, 44787], "18": [135456, 89573]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5c984ab30f32e2c5881c806b5a6e69b6edc4a29a6edd9e76c098bd29b3207a9d"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.svs/features.npy b/features/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b946060275d38b47f863e158ae660367f9baa55f --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8894ba178fa6d22f98fe0eb10cf68be2a367add5d7135711df0f37f0a6b9a3c2 +size 185336692 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.svs/mask.npy b/features/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..386c91154f1d0d600adb6ada916e34bc0f70cf95 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c24b979091535c66524f861f5b3deb6bf5b661b7e2ebdd3a8e1090e492e3ff6a +size 172813100 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.svs/metadata.json b/features/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..dd894079ddf6725fe258332ced12c98af8fef75b --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22591, "total_number_of_tiles": 22591, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123504, 89549], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 22], "6": [61, 44], "7": [121, 88], "8": [242, 175], "9": [483, 350], "10": [965, 700], "11": [1930, 1400], "12": [3860, 2799], "13": [7719, 5597], "14": [15438, 11194], "15": [30876, 22388], "16": [61752, 44775], "17": [123504, 89549]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7cd107b0ac93ff1ad859c8bf3269d490"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3F-01Z-00-DX8.D27EA057-F808-44FE-AF5D-9F7237D59488.svs/features.npy b/features/TCGA-G2-AA3F-01Z-00-DX8.D27EA057-F808-44FE-AF5D-9F7237D59488.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1c8334148af6e497de06bd577d59fde8c355d709 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX8.D27EA057-F808-44FE-AF5D-9F7237D59488.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:aa8d99edf011803b7f0a300532d9762667db49fa33cac33518b890200d467ddf +size 221278416 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX8.D27EA057-F808-44FE-AF5D-9F7237D59488.svs/mask.npy b/features/TCGA-G2-AA3F-01Z-00-DX8.D27EA057-F808-44FE-AF5D-9F7237D59488.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..da31967a189c7bdf368a869003ebe8459e5cca00 --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX8.D27EA057-F808-44FE-AF5D-9F7237D59488.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:003b4e8c158808e8c96739a365f74bc025bf0fbc00a1c94f94489d9079d0743b +size 198016128 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX8.D27EA057-F808-44FE-AF5D-9F7237D59488.svs/metadata.json b/features/TCGA-G2-AA3F-01Z-00-DX8.D27EA057-F808-44FE-AF5D-9F7237D59488.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..44af17342aaa3304e43df295a79e3ed6fc1a830d --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX8.D27EA057-F808-44FE-AF5D-9F7237D59488.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26972, "total_number_of_tiles": 26972, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [141432, 89587], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 11], "6": [35, 22], "7": [70, 44], "8": [139, 88], "9": [277, 175], "10": [553, 350], "11": [1105, 700], "12": [2210, 1400], "13": [4420, 2800], "14": [8840, 5600], "15": [17679, 11199], "16": [35358, 22397], "17": [70716, 44794], "18": [141432, 89587]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "fe40c70536552e0c697fb7ba1b1f7e8789c7f02b9204b9b92df0b05704898963"} \ No newline at end of file diff --git a/features/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.svs/features.npy b/features/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..75abaa04a32ffb28f88eeb7095f040b8423a6dbd --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a69141916f7148bbb1155a737c8b2ab8d8dc2329deec751cb3f699eb032f974 +size 194106768 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.svs/mask.npy b/features/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d2e036a7764439cbda9e8c8f01d888682e92763d --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b112158b47267eb41c866826cf8cc70da04fe2ba59b7e5854ee6c322d4c7585c +size 186827560 diff --git a/features/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.svs/metadata.json b/features/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9ddad22cd589ef3e574827914974db909d805c4f --- /dev/null +++ b/features/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23660, "total_number_of_tiles": 23660, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [133464, 89570], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [33, 22], "7": [66, 44], "8": [131, 88], "9": [261, 175], "10": [522, 350], "11": [1043, 700], "12": [2086, 1400], "13": [4171, 2800], "14": [8342, 5599], "15": [16683, 11197], "16": [33366, 22393], "17": [66732, 44785], "18": [133464, 89570]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "45f722cf2524647e4fb5073019aa08a848ae3ff34cf02bb1884bc7a9e0796206"} \ No newline at end of file diff --git a/features/TCGA-GC-A3BM-01Z-00-DX1.8880FA8C-8607-4C55-A619-2C8D7F2866EF.svs/features.npy b/features/TCGA-GC-A3BM-01Z-00-DX1.8880FA8C-8607-4C55-A619-2C8D7F2866EF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d30ca69d1de7e92f25e9beace0a22ea23570e199 --- /dev/null +++ b/features/TCGA-GC-A3BM-01Z-00-DX1.8880FA8C-8607-4C55-A619-2C8D7F2866EF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:387d7a87c3a567b25be9dc5a32f5b974013b053cc83c4e2276689152979d5f81 +size 22667780 diff --git a/features/TCGA-GC-A3BM-01Z-00-DX1.8880FA8C-8607-4C55-A619-2C8D7F2866EF.svs/mask.npy b/features/TCGA-GC-A3BM-01Z-00-DX1.8880FA8C-8607-4C55-A619-2C8D7F2866EF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..89d3c14d3e123d80361f8098e4bd344e769d8e93 --- /dev/null +++ b/features/TCGA-GC-A3BM-01Z-00-DX1.8880FA8C-8607-4C55-A619-2C8D7F2866EF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:41c7e72d18c334b3d71bd982a7e98d1ba808c259aee7302dfda8e5ed1f90d36c +size 15881392 diff --git a/features/TCGA-GC-A3BM-01Z-00-DX1.8880FA8C-8607-4C55-A619-2C8D7F2866EF.svs/metadata.json b/features/TCGA-GC-A3BM-01Z-00-DX1.8880FA8C-8607-4C55-A619-2C8D7F2866EF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..197e0345495c712d84a2577ee331c871144ae3e5 --- /dev/null +++ b/features/TCGA-GC-A3BM-01Z-00-DX1.8880FA8C-8607-4C55-A619-2C8D7F2866EF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 2763, "total_number_of_tiles": 2763, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [36176, 28087], "tile_mpp": 0.4924, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [9, 7], "5": [18, 14], "6": [36, 28], "7": [71, 55], "8": [142, 110], "9": [283, 220], "10": [566, 439], "11": [1131, 878], "12": [2261, 1756], "13": [4522, 3511], "14": [9044, 7022], "15": [18088, 14044], "16": [36176, 28087]}, "level_mpp_mapping": {"0": 16134.9632, "1": 8067.4816, "2": 4033.7408, "3": 2016.8704, "4": 1008.4352, "5": 504.2176, "6": 252.1088, "7": 126.0544, "8": 63.0272, "9": 31.5136, "10": 15.7568, "11": 7.8784, "12": 3.9392, "13": 1.9696, "14": 0.9848, "15": 0.4924, "16": 0.2462}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "88a832068f7abab4b701e8ee2964c6d46269a559aa91a2a961fbdfc18a52ed2b"} \ No newline at end of file diff --git a/features/TCGA-GC-A3I6-01Z-00-DX1.47650F7B-0AD3-49C9-AB9E-40383C7D07AC.svs/features.npy b/features/TCGA-GC-A3I6-01Z-00-DX1.47650F7B-0AD3-49C9-AB9E-40383C7D07AC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..57cbf758ae69f5e6f3be3a5133d961f8dc2174b0 --- /dev/null +++ b/features/TCGA-GC-A3I6-01Z-00-DX1.47650F7B-0AD3-49C9-AB9E-40383C7D07AC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3091024ae129e442c9164169e30a02f93c5b93feab91a12a7fb362b257cdf946 +size 26105256 diff --git a/features/TCGA-GC-A3I6-01Z-00-DX1.47650F7B-0AD3-49C9-AB9E-40383C7D07AC.svs/mask.npy b/features/TCGA-GC-A3I6-01Z-00-DX1.47650F7B-0AD3-49C9-AB9E-40383C7D07AC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ad76d9a3ee883589f8a5926f08d67fcd713f9c7a --- /dev/null +++ b/features/TCGA-GC-A3I6-01Z-00-DX1.47650F7B-0AD3-49C9-AB9E-40383C7D07AC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:87d3bf914a5ee53531f418f3cc33736849e0a00042db9032dd803bf4653d2520 +size 27959840 diff --git a/features/TCGA-GC-A3I6-01Z-00-DX1.47650F7B-0AD3-49C9-AB9E-40383C7D07AC.svs/metadata.json b/features/TCGA-GC-A3I6-01Z-00-DX1.47650F7B-0AD3-49C9-AB9E-40383C7D07AC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bcde595d525a74e14d449821275600947c3ded14 --- /dev/null +++ b/features/TCGA-GC-A3I6-01Z-00-DX1.47650F7B-0AD3-49C9-AB9E-40383C7D07AC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 3182, "total_number_of_tiles": 3182, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [43824, 40821], "tile_mpp": 0.4914, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 10], "5": [22, 20], "6": [43, 40], "7": [86, 80], "8": [172, 160], "9": [343, 319], "10": [685, 638], "11": [1370, 1276], "12": [2739, 2552], "13": [5478, 5103], "14": [10956, 10206], "15": [21912, 20411], "16": [43824, 40821]}, "level_mpp_mapping": {"0": 16102.1952, "1": 8051.0976, "2": 4025.5488, "3": 2012.7744, "4": 1006.3872, "5": 503.1936, "6": 251.5968, "7": 125.7984, "8": 62.8992, "9": 31.4496, "10": 15.7248, "11": 7.8624, "12": 3.9312, "13": 1.9656, "14": 0.9828, "15": 0.4914, "16": 0.2457}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "77669827ab34687f91e5eab10a942fcb4218e5b664f75d320e7bb2d399ddcb7c"} \ No newline at end of file diff --git a/features/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.svs/features.npy b/features/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..74cd52bf48a147b3591ca76b947405ebe808e010 --- /dev/null +++ b/features/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0015e986e76ceda4926f1789762d2e31aac0766a8666982641cc685154f53c8d +size 52481116 diff --git a/features/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.svs/mask.npy b/features/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1ea979a7d95481ad7abe24a284e80ce795baf46c --- /dev/null +++ b/features/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a2f046378abc0fdd30c6333d1f76931bd2a58461d42644a7a92a6a08c0172daa +size 61035008 diff --git a/features/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.svs/metadata.json b/features/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ff69ff0dd7f0c8614d940ee6d3146ed14dc18bf6 --- /dev/null +++ b/features/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 6397, "total_number_of_tiles": 6397, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [63744, 61272], "tile_mpp": 0.4914, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 4], "3": [8, 8], "4": [16, 15], "5": [32, 30], "6": [63, 60], "7": [125, 120], "8": [249, 240], "9": [498, 479], "10": [996, 958], "11": [1992, 1915], "12": [3984, 3830], "13": [7968, 7659], "14": [15936, 15318], "15": [31872, 30636], "16": [63744, 61272]}, "level_mpp_mapping": {"0": 16102.1952, "1": 8051.0976, "2": 4025.5488, "3": 2012.7744, "4": 1006.3872, "5": 503.1936, "6": 251.5968, "7": 125.7984, "8": 62.8992, "9": 31.4496, "10": 15.7248, "11": 7.8624, "12": 3.9312, "13": 1.9656, "14": 0.9828, "15": 0.4914, "16": 0.2457}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d3ecfc4c9c1268f5993e913ea20f95f9d14cea9dd9e269c143a397d7c649cb62"} \ No newline at end of file diff --git a/features/TCGA-GC-A3RB-01Z-00-DX1.C0011A55-EA8A-436B-BBCA-342B96803B22.svs/features.npy b/features/TCGA-GC-A3RB-01Z-00-DX1.C0011A55-EA8A-436B-BBCA-342B96803B22.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..86218c1283583d815e3247112368e9a6d6563df6 --- /dev/null +++ b/features/TCGA-GC-A3RB-01Z-00-DX1.C0011A55-EA8A-436B-BBCA-342B96803B22.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:61925b29764204276fecd08fbd339e523c77e83cf82a8cf6a6c2c431a14e3fcd +size 21486404 diff --git a/features/TCGA-GC-A3RB-01Z-00-DX1.C0011A55-EA8A-436B-BBCA-342B96803B22.svs/mask.npy b/features/TCGA-GC-A3RB-01Z-00-DX1.C0011A55-EA8A-436B-BBCA-342B96803B22.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9a8807e0a1c6432ad88a52fd5a6797619b07df6c --- /dev/null +++ b/features/TCGA-GC-A3RB-01Z-00-DX1.C0011A55-EA8A-436B-BBCA-342B96803B22.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:baee8c673ae75f918e7f3d1e15373c5d2afea540530dfda3db0f4a76b0a18182 +size 18071552 diff --git a/features/TCGA-GC-A3RB-01Z-00-DX1.C0011A55-EA8A-436B-BBCA-342B96803B22.svs/metadata.json b/features/TCGA-GC-A3RB-01Z-00-DX1.C0011A55-EA8A-436B-BBCA-342B96803B22.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bae8b1d8fa32f03c7f3856a2eb9f1e5ccefb5a9d --- /dev/null +++ b/features/TCGA-GC-A3RB-01Z-00-DX1.C0011A55-EA8A-436B-BBCA-342B96803B22.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 2619, "total_number_of_tiles": 2619, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [35856, 32241], "tile_mpp": 0.4914, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [9, 8], "5": [18, 16], "6": [36, 32], "7": [71, 63], "8": [141, 126], "9": [281, 252], "10": [561, 504], "11": [1121, 1008], "12": [2241, 2016], "13": [4482, 4031], "14": [8964, 8061], "15": [17928, 16121], "16": [35856, 32241]}, "level_mpp_mapping": {"0": 16102.1952, "1": 8051.0976, "2": 4025.5488, "3": 2012.7744, "4": 1006.3872, "5": 503.1936, "6": 251.5968, "7": 125.7984, "8": 62.8992, "9": 31.4496, "10": 15.7248, "11": 7.8624, "12": 3.9312, "13": 1.9656, "14": 0.9828, "15": 0.4914, "16": 0.2457}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "93b6efc0f9f61dcdefd8fb86720dbc1cd8dda12a09ac0757a81777200beb08cc"} \ No newline at end of file diff --git a/features/TCGA-GC-A3RC-01Z-00-DX1.DC4B31BC-5C7F-421A-88CD-38428051A653.svs/features.npy b/features/TCGA-GC-A3RC-01Z-00-DX1.DC4B31BC-5C7F-421A-88CD-38428051A653.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6bd235b4daa67e46f7cec8766975d667b234e63d --- /dev/null +++ b/features/TCGA-GC-A3RC-01Z-00-DX1.DC4B31BC-5C7F-421A-88CD-38428051A653.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c3b1cdec4f2ec7064ffda3ef3488be5cbd86d0ed495a66f6cfaeed69fec5781e +size 66099756 diff --git a/features/TCGA-GC-A3RC-01Z-00-DX1.DC4B31BC-5C7F-421A-88CD-38428051A653.svs/mask.npy b/features/TCGA-GC-A3RC-01Z-00-DX1.DC4B31BC-5C7F-421A-88CD-38428051A653.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..58234f734fbc36299cd65c20f97d911aa50efe79 --- /dev/null +++ b/features/TCGA-GC-A3RC-01Z-00-DX1.DC4B31BC-5C7F-421A-88CD-38428051A653.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b6e36b690e31b399fc17691083f57df79c9bc25a16aff1c779ac64464283c62f +size 103314072 diff --git a/features/TCGA-GC-A3RC-01Z-00-DX1.DC4B31BC-5C7F-421A-88CD-38428051A653.svs/metadata.json b/features/TCGA-GC-A3RC-01Z-00-DX1.DC4B31BC-5C7F-421A-88CD-38428051A653.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..20500bd04f4a2c4781f81195f00f7b24c0a866d9 --- /dev/null +++ b/features/TCGA-GC-A3RC-01Z-00-DX1.DC4B31BC-5C7F-421A-88CD-38428051A653.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 8057, "total_number_of_tiles": 8057, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105576, 62616], "tile_mpp": 0.4914, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [7, 4], "4": [13, 8], "5": [26, 16], "6": [52, 31], "7": [104, 62], "8": [207, 123], "9": [413, 245], "10": [825, 490], "11": [1650, 979], "12": [3300, 1957], "13": [6599, 3914], "14": [13197, 7827], "15": [26394, 15654], "16": [52788, 31308], "17": [105576, 62616]}, "level_mpp_mapping": {"0": 32204.3904, "1": 16102.1952, "2": 8051.0976, "3": 4025.5488, "4": 2012.7744, "5": 1006.3872, "6": 503.1936, "7": 251.5968, "8": 125.7984, "9": 62.8992, "10": 31.4496, "11": 15.7248, "12": 7.8624, "13": 3.9312, "14": 1.9656, "15": 0.9828, "16": 0.4914, "17": 0.2457}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "357db500615dd62858a4093b15fc94915b838ea719cf273bedad2ea8f93f16eb"} \ No newline at end of file diff --git a/features/TCGA-GC-A3RD-01Z-00-DX1.40B5E97D-B45F-4C93-A41B-0F17B757491B.svs/features.npy b/features/TCGA-GC-A3RD-01Z-00-DX1.40B5E97D-B45F-4C93-A41B-0F17B757491B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a305564170db615c7dcbb13a2c42efd7ab65670e --- /dev/null +++ b/features/TCGA-GC-A3RD-01Z-00-DX1.40B5E97D-B45F-4C93-A41B-0F17B757491B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:63a742b579959d043dd520ec633d36c612792bea5694c5579fb8d9b5f6b62694 +size 94067192 diff --git a/features/TCGA-GC-A3RD-01Z-00-DX1.40B5E97D-B45F-4C93-A41B-0F17B757491B.svs/mask.npy b/features/TCGA-GC-A3RD-01Z-00-DX1.40B5E97D-B45F-4C93-A41B-0F17B757491B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3cfe312e22d6bec909c74562a641722ec87da874 --- /dev/null +++ b/features/TCGA-GC-A3RD-01Z-00-DX1.40B5E97D-B45F-4C93-A41B-0F17B757491B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e46ef9d98216eccb0c723e633abcc18dbe3d2883b9ca6b6620f9f77c7799b116 +size 112011904 diff --git a/features/TCGA-GC-A3RD-01Z-00-DX1.40B5E97D-B45F-4C93-A41B-0F17B757491B.svs/metadata.json b/features/TCGA-GC-A3RD-01Z-00-DX1.40B5E97D-B45F-4C93-A41B-0F17B757491B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..34143b9a742310a390a18ebdaf88080daf831790 --- /dev/null +++ b/features/TCGA-GC-A3RD-01Z-00-DX1.40B5E97D-B45F-4C93-A41B-0F17B757491B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11466, "total_number_of_tiles": 11466, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [96883, 73978], "tile_mpp": 0.504, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [24, 19], "6": [48, 37], "7": [95, 73], "8": [190, 145], "9": [379, 289], "10": [757, 578], "11": [1514, 1156], "12": [3028, 2312], "13": [6056, 4624], "14": [12111, 9248], "15": [24221, 18495], "16": [48442, 36989], "17": [96883, 73978]}, "level_mpp_mapping": {"0": 33030.144, "1": 16515.072, "2": 8257.536, "3": 4128.768, "4": 2064.384, "5": 1032.192, "6": 516.096, "7": 258.048, "8": 129.024, "9": 64.512, "10": 32.256, "11": 16.128, "12": 8.064, "13": 4.032, "14": 2.016, "15": 1.008, "16": 0.504, "17": 0.252}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "daf2d829d0e6d1e584b046cbd53e5b723b529edb837d943f551c4d37ffe38a16"} \ No newline at end of file diff --git a/features/TCGA-GC-A3WC-01Z-00-DX1.D8F5CD43-7338-414C-ADE8-AC0BBC6A871C.svs/features.npy b/features/TCGA-GC-A3WC-01Z-00-DX1.D8F5CD43-7338-414C-ADE8-AC0BBC6A871C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b6148398508261aa86a1c8d849c43495e7e86ed9 --- /dev/null +++ b/features/TCGA-GC-A3WC-01Z-00-DX1.D8F5CD43-7338-414C-ADE8-AC0BBC6A871C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b496d2bbf4d198a6bcbfbd2d1a9ab1525233fa2e1e0e5691586b5d78a30ea504 +size 20641392 diff --git a/features/TCGA-GC-A3WC-01Z-00-DX1.D8F5CD43-7338-414C-ADE8-AC0BBC6A871C.svs/mask.npy b/features/TCGA-GC-A3WC-01Z-00-DX1.D8F5CD43-7338-414C-ADE8-AC0BBC6A871C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c71e468020f9bd1acc2a9bdb9d9b938f0d4e1055 --- /dev/null +++ b/features/TCGA-GC-A3WC-01Z-00-DX1.D8F5CD43-7338-414C-ADE8-AC0BBC6A871C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:571e50ccce2938e238ba2dadfacbd9df455526c238a0ac49a884d549d8aab2b0 +size 34083248 diff --git a/features/TCGA-GC-A3WC-01Z-00-DX1.D8F5CD43-7338-414C-ADE8-AC0BBC6A871C.svs/metadata.json b/features/TCGA-GC-A3WC-01Z-00-DX1.D8F5CD43-7338-414C-ADE8-AC0BBC6A871C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6c5169c1de73e6dbcbd641dcf5e8f1e5b2071db2 --- /dev/null +++ b/features/TCGA-GC-A3WC-01Z-00-DX1.D8F5CD43-7338-414C-ADE8-AC0BBC6A871C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 2516, "total_number_of_tiles": 2516, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [79680, 27363], "tile_mpp": 0.4914, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [10, 4], "5": [20, 7], "6": [39, 14], "7": [78, 27], "8": [156, 54], "9": [312, 107], "10": [623, 214], "11": [1245, 428], "12": [2490, 856], "13": [4980, 1711], "14": [9960, 3421], "15": [19920, 6841], "16": [39840, 13682], "17": [79680, 27363]}, "level_mpp_mapping": {"0": 32204.3904, "1": 16102.1952, "2": 8051.0976, "3": 4025.5488, "4": 2012.7744, "5": 1006.3872, "6": 503.1936, "7": 251.5968, "8": 125.7984, "9": 62.8992, "10": 31.4496, "11": 15.7248, "12": 7.8624, "13": 3.9312, "14": 1.9656, "15": 0.9828, "16": 0.4914, "17": 0.2457}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8ce3ebb5eea2a45558da038779d02a797916c37a6fd8bfa37d14477a0af11c92"} \ No newline at end of file diff --git a/features/TCGA-GC-A3YS-01Z-00-DX1.97B4664A-9D8B-460D-B4A4-89855D3DB0C2.svs/features.npy b/features/TCGA-GC-A3YS-01Z-00-DX1.97B4664A-9D8B-460D-B4A4-89855D3DB0C2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ea6fdac0f66decef42f97c9a34491a8a15f19fe6 --- /dev/null +++ b/features/TCGA-GC-A3YS-01Z-00-DX1.97B4664A-9D8B-460D-B4A4-89855D3DB0C2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:764f8f69e6056a2983f3714f6ad05cf8e38dae8f7733e60a027b7c6166bced24 +size 56443648 diff --git a/features/TCGA-GC-A3YS-01Z-00-DX1.97B4664A-9D8B-460D-B4A4-89855D3DB0C2.svs/mask.npy b/features/TCGA-GC-A3YS-01Z-00-DX1.97B4664A-9D8B-460D-B4A4-89855D3DB0C2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9235377e443693f2736a0b069666e4ce246b9214 --- /dev/null +++ b/features/TCGA-GC-A3YS-01Z-00-DX1.97B4664A-9D8B-460D-B4A4-89855D3DB0C2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f49a5d32e929f2966f04c8cc73c4850ed652154e9836f935fe0fc38d4d2e1f28 +size 54843996 diff --git a/features/TCGA-GC-A3YS-01Z-00-DX1.97B4664A-9D8B-460D-B4A4-89855D3DB0C2.svs/metadata.json b/features/TCGA-GC-A3YS-01Z-00-DX1.97B4664A-9D8B-460D-B4A4-89855D3DB0C2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d227500b576dace311c9bf7133e256dc53cab6b8 --- /dev/null +++ b/features/TCGA-GC-A3YS-01Z-00-DX1.97B4664A-9D8B-460D-B4A4-89855D3DB0C2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 6880, "total_number_of_tiles": 6880, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [57768, 60749], "tile_mpp": 0.4914, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 4], "3": [8, 8], "4": [15, 15], "5": [29, 30], "6": [57, 60], "7": [113, 119], "8": [226, 238], "9": [452, 475], "10": [903, 950], "11": [1806, 1899], "12": [3611, 3797], "13": [7221, 7594], "14": [14442, 15188], "15": [28884, 30375], "16": [57768, 60749]}, "level_mpp_mapping": {"0": 16102.1952, "1": 8051.0976, "2": 4025.5488, "3": 2012.7744, "4": 1006.3872, "5": 503.1936, "6": 251.5968, "7": 125.7984, "8": 62.8992, "9": 31.4496, "10": 15.7248, "11": 7.8624, "12": 3.9312, "13": 1.9656, "14": 0.9828, "15": 0.4914, "16": 0.2457}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5fe2db974b5db887942806661388d831979fdba99b4921c032593b4d93525d5e"} \ No newline at end of file diff --git a/features/TCGA-GC-A4ZW-01Z-00-DX1.6ECD07FB-AE2C-4A04-812F-F5FB2B31F820.svs/features.npy b/features/TCGA-GC-A4ZW-01Z-00-DX1.6ECD07FB-AE2C-4A04-812F-F5FB2B31F820.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ba442d74a8f9c83024fb55ec16cdf4e5ee53fce4 --- /dev/null +++ b/features/TCGA-GC-A4ZW-01Z-00-DX1.6ECD07FB-AE2C-4A04-812F-F5FB2B31F820.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f8f7957288d191f8398b530fa0143e7070ab0ff4be3fa0e04794f0d0b8ebe8c4 +size 125964344 diff --git a/features/TCGA-GC-A4ZW-01Z-00-DX1.6ECD07FB-AE2C-4A04-812F-F5FB2B31F820.svs/mask.npy b/features/TCGA-GC-A4ZW-01Z-00-DX1.6ECD07FB-AE2C-4A04-812F-F5FB2B31F820.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9a52c259f0ce652471b674acd564189a538e15f3 --- /dev/null +++ b/features/TCGA-GC-A4ZW-01Z-00-DX1.6ECD07FB-AE2C-4A04-812F-F5FB2B31F820.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:971300488d8f25edffd089fe19a531c54a7b1f092efd489c3624284f0f2cb767 +size 107482800 diff --git a/features/TCGA-GC-A4ZW-01Z-00-DX1.6ECD07FB-AE2C-4A04-812F-F5FB2B31F820.svs/metadata.json b/features/TCGA-GC-A4ZW-01Z-00-DX1.6ECD07FB-AE2C-4A04-812F-F5FB2B31F820.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..93084adb788bd7ee808506438f82537b0848b6be --- /dev/null +++ b/features/TCGA-GC-A4ZW-01Z-00-DX1.6ECD07FB-AE2C-4A04-812F-F5FB2B31F820.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15354, "total_number_of_tiles": 15354, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [84413, 81482], "tile_mpp": 0.504, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 10], "5": [21, 20], "6": [42, 40], "7": [83, 80], "8": [165, 160], "9": [330, 319], "10": [660, 637], "11": [1319, 1274], "12": [2638, 2547], "13": [5276, 5093], "14": [10552, 10186], "15": [21104, 20371], "16": [42207, 40741], "17": [84413, 81482]}, "level_mpp_mapping": {"0": 33030.144, "1": 16515.072, "2": 8257.536, "3": 4128.768, "4": 2064.384, "5": 1032.192, "6": 516.096, "7": 258.048, "8": 129.024, "9": 64.512, "10": 32.256, "11": 16.128, "12": 8.064, "13": 4.032, "14": 2.016, "15": 1.008, "16": 0.504, "17": 0.252}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4334879b85be78297bdef9889556f187d95e90be7fa9b15b2bf68fba21cd5723"} \ No newline at end of file diff --git a/features/TCGA-GC-A6I1-01Z-00-DX1.2AD569EC-372B-4B72-A222-924091ADEE99.svs/features.npy b/features/TCGA-GC-A6I1-01Z-00-DX1.2AD569EC-372B-4B72-A222-924091ADEE99.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d560893e14de8845ee2c72dc7e9199b323b79e09 --- /dev/null +++ b/features/TCGA-GC-A6I1-01Z-00-DX1.2AD569EC-372B-4B72-A222-924091ADEE99.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d89868f40ad42e7cfb881e58b8c0e4562f9cc2a10fa0ebfc1140b8b963ab30d0 +size 17975092 diff --git a/features/TCGA-GC-A6I1-01Z-00-DX1.2AD569EC-372B-4B72-A222-924091ADEE99.svs/mask.npy b/features/TCGA-GC-A6I1-01Z-00-DX1.2AD569EC-372B-4B72-A222-924091ADEE99.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8e7b40285e05c9568e43627d0dd619f9784b8ed4 --- /dev/null +++ b/features/TCGA-GC-A6I1-01Z-00-DX1.2AD569EC-372B-4B72-A222-924091ADEE99.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7b7d1cf6bfb69e8c9ed2b5ca1fdd29402082e61723a9783921fa6133e844baed +size 15871084 diff --git a/features/TCGA-GC-A6I1-01Z-00-DX1.2AD569EC-372B-4B72-A222-924091ADEE99.svs/metadata.json b/features/TCGA-GC-A6I1-01Z-00-DX1.2AD569EC-372B-4B72-A222-924091ADEE99.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a3a6f4cce9ad91a2b265f076b70f18662fede875 --- /dev/null +++ b/features/TCGA-GC-A6I1-01Z-00-DX1.2AD569EC-372B-4B72-A222-924091ADEE99.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 2191, "total_number_of_tiles": 2191, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [36451, 27841], "tile_mpp": 0.504, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [9, 7], "5": [18, 14], "6": [36, 28], "7": [72, 55], "8": [143, 109], "9": [285, 218], "10": [570, 436], "11": [1140, 871], "12": [2279, 1741], "13": [4557, 3481], "14": [9113, 6961], "15": [18226, 13921], "16": [36451, 27841]}, "level_mpp_mapping": {"0": 16515.072, "1": 8257.536, "2": 4128.768, "3": 2064.384, "4": 1032.192, "5": 516.096, "6": 258.048, "7": 129.024, "8": 64.512, "9": 32.256, "10": 16.128, "11": 8.064, "12": 4.032, "13": 2.016, "14": 1.008, "15": 0.504, "16": 0.252}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c9e3e39ff887533b0ee6e1ff77c6393caae29bf1809f36918fd73dc446233584"} \ No newline at end of file diff --git a/features/TCGA-GC-A6I3-01Z-00-DX1.1B3D09B9-14FB-4236-9354-3E5CC59354A7.svs/features.npy b/features/TCGA-GC-A6I3-01Z-00-DX1.1B3D09B9-14FB-4236-9354-3E5CC59354A7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..18bd16cdd80992165929b79dfd28635e4140eafe --- /dev/null +++ b/features/TCGA-GC-A6I3-01Z-00-DX1.1B3D09B9-14FB-4236-9354-3E5CC59354A7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4f938ce7997abe44e885451d3e9f830988350f803cf92d42dcc8c1a3aaafb462 +size 70529916 diff --git a/features/TCGA-GC-A6I3-01Z-00-DX1.1B3D09B9-14FB-4236-9354-3E5CC59354A7.svs/mask.npy b/features/TCGA-GC-A6I3-01Z-00-DX1.1B3D09B9-14FB-4236-9354-3E5CC59354A7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b7127602009905b4f04ff6b606617c8c1a7c86cb --- /dev/null +++ b/features/TCGA-GC-A6I3-01Z-00-DX1.1B3D09B9-14FB-4236-9354-3E5CC59354A7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1ea56f870f86496fe2835bd752c0192af95965f995adc8af77795fcb40c02a29 +size 50726288 diff --git a/features/TCGA-GC-A6I3-01Z-00-DX1.1B3D09B9-14FB-4236-9354-3E5CC59354A7.svs/metadata.json b/features/TCGA-GC-A6I3-01Z-00-DX1.1B3D09B9-14FB-4236-9354-3E5CC59354A7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..090031c2210fe204f799367cc4b7a5b50c447021 --- /dev/null +++ b/features/TCGA-GC-A6I3-01Z-00-DX1.1B3D09B9-14FB-4236-9354-3E5CC59354A7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 8597, "total_number_of_tiles": 8597, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [71943, 45118], "tile_mpp": 0.504, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [36, 23], "7": [71, 45], "8": [141, 89], "9": [282, 177], "10": [563, 353], "11": [1125, 705], "12": [2249, 1410], "13": [4497, 2820], "14": [8993, 5640], "15": [17986, 11280], "16": [35972, 22559], "17": [71943, 45118]}, "level_mpp_mapping": {"0": 33030.144, "1": 16515.072, "2": 8257.536, "3": 4128.768, "4": 2064.384, "5": 1032.192, "6": 516.096, "7": 258.048, "8": 129.024, "9": 64.512, "10": 32.256, "11": 16.128, "12": 8.064, "13": 4.032, "14": 2.016, "15": 1.008, "16": 0.504, "17": 0.252}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9d9344511688b146c00a4670b80a8d899e2caa95bdde99210b7ec4ac0234c89f"} \ No newline at end of file diff --git a/features/TCGA-GD-A2C5-01Z-00-DX1.3A81505E-5BF9-466C-938B-28909CD88193.svs/features.npy b/features/TCGA-GD-A2C5-01Z-00-DX1.3A81505E-5BF9-466C-938B-28909CD88193.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..92cd1dceba97f9a8bc6c3210c12699b7579a4d01 --- /dev/null +++ b/features/TCGA-GD-A2C5-01Z-00-DX1.3A81505E-5BF9-466C-938B-28909CD88193.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:327fe86f6bd808e7699b93a845cc1bce20551daca6d800f4fb23da8225976aa5 +size 63195540 diff --git a/features/TCGA-GD-A2C5-01Z-00-DX1.3A81505E-5BF9-466C-938B-28909CD88193.svs/mask.npy b/features/TCGA-GD-A2C5-01Z-00-DX1.3A81505E-5BF9-466C-938B-28909CD88193.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..820a5b55963ca0095c7f05928abbd53cee03d4d3 --- /dev/null +++ b/features/TCGA-GD-A2C5-01Z-00-DX1.3A81505E-5BF9-466C-938B-28909CD88193.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7be4df2d119f527f4d2df8c8f83ec455c6e43e99d317da1140a7ca9d43d57a36 +size 74671128 diff --git a/features/TCGA-GD-A2C5-01Z-00-DX1.3A81505E-5BF9-466C-938B-28909CD88193.svs/metadata.json b/features/TCGA-GD-A2C5-01Z-00-DX1.3A81505E-5BF9-466C-938B-28909CD88193.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2db28ab91e5a38ad32da220f5183111730488896 --- /dev/null +++ b/features/TCGA-GD-A2C5-01Z-00-DX1.3A81505E-5BF9-466C-938B-28909CD88193.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 7703, "total_number_of_tiles": 7703, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [134232, 35600], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [9, 3], "5": [17, 5], "6": [33, 9], "7": [66, 18], "8": [132, 35], "9": [263, 70], "10": [525, 140], "11": [1049, 279], "12": [2098, 557], "13": [4195, 1113], "14": [8390, 2225], "15": [16779, 4450], "16": [33558, 8900], "17": [67116, 17800], "18": [134232, 35600]}, "level_mpp_mapping": {"0": 64697.1392, "1": 32348.5696, "2": 16174.2848, "3": 8087.1424, "4": 4043.5712, "5": 2021.7856, "6": 1010.8928, "7": 505.4464, "8": 252.7232, "9": 126.3616, "10": 63.1808, "11": 31.5904, "12": 15.7952, "13": 7.8976, "14": 3.9488, "15": 1.9744, "16": 0.9872, "17": 0.4936, "18": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "984f28c8aebe4e198f88f98cc46ad71a12d0448a0dfffe32b7cb832d37594da5"} \ No newline at end of file diff --git a/features/TCGA-GD-A3OP-01Z-00-DX1.A1D66E35-8E4D-4420-AD57-D45016D016D5.svs/features.npy b/features/TCGA-GD-A3OP-01Z-00-DX1.A1D66E35-8E4D-4420-AD57-D45016D016D5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3f28844e3ae09000d5cad5869ffff69caae97da6 --- /dev/null +++ b/features/TCGA-GD-A3OP-01Z-00-DX1.A1D66E35-8E4D-4420-AD57-D45016D016D5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2b7086ad46be8404d439aecc23146d4f4e38e2008f4963c079b9a12fc4aba785 +size 96946796 diff --git a/features/TCGA-GD-A3OP-01Z-00-DX1.A1D66E35-8E4D-4420-AD57-D45016D016D5.svs/mask.npy b/features/TCGA-GD-A3OP-01Z-00-DX1.A1D66E35-8E4D-4420-AD57-D45016D016D5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b1b8252a9ef28274997924bc415355383fe1e6b5 --- /dev/null +++ b/features/TCGA-GD-A3OP-01Z-00-DX1.A1D66E35-8E4D-4420-AD57-D45016D016D5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:80d4f2e5236bcaf374447dd922069fc8c8bcd5387d1c2f490c8a659e60f325e2 +size 188797976 diff --git a/features/TCGA-GD-A3OP-01Z-00-DX1.A1D66E35-8E4D-4420-AD57-D45016D016D5.svs/metadata.json b/features/TCGA-GD-A3OP-01Z-00-DX1.A1D66E35-8E4D-4420-AD57-D45016D016D5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f1d29b2a73c2892356bd8c8c69911b1e65b33198 --- /dev/null +++ b/features/TCGA-GD-A3OP-01Z-00-DX1.A1D66E35-8E4D-4420-AD57-D45016D016D5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11817, "total_number_of_tiles": 11817, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [179927, 67146], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [11, 5], "5": [22, 9], "6": [44, 17], "7": [88, 33], "8": [176, 66], "9": [352, 132], "10": [703, 263], "11": [1406, 525], "12": [2812, 1050], "13": [5623, 2099], "14": [11246, 4197], "15": [22491, 8394], "16": [44982, 16787], "17": [89964, 33573], "18": [179927, 67146]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bd0f631ef806af51df4969bbb5d2dfce7529b0c26383453db03bbbe94707973b"} \ No newline at end of file diff --git a/features/TCGA-GD-A3OQ-01Z-00-DX1.ED8C9F09-57A9-4915-950A-A61FE2FE8538.svs/features.npy b/features/TCGA-GD-A3OQ-01Z-00-DX1.ED8C9F09-57A9-4915-950A-A61FE2FE8538.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..365c060c995e026736cc612a81370b1fa1702be8 --- /dev/null +++ b/features/TCGA-GD-A3OQ-01Z-00-DX1.ED8C9F09-57A9-4915-950A-A61FE2FE8538.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d1717789c2c02cf7d3b27f43f66a04f68b99cf8892d7bc4baeb38ec05cb9c3fa +size 67264724 diff --git a/features/TCGA-GD-A3OQ-01Z-00-DX1.ED8C9F09-57A9-4915-950A-A61FE2FE8538.svs/mask.npy b/features/TCGA-GD-A3OQ-01Z-00-DX1.ED8C9F09-57A9-4915-950A-A61FE2FE8538.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..33560e69a0403042a8e57915786bf762d53a118a --- /dev/null +++ b/features/TCGA-GD-A3OQ-01Z-00-DX1.ED8C9F09-57A9-4915-950A-A61FE2FE8538.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f6b0549b8c7ea076041a010bb8990680fc57a878c94ad2cc08b3e126788d90f +size 75928552 diff --git a/features/TCGA-GD-A3OQ-01Z-00-DX1.ED8C9F09-57A9-4915-950A-A61FE2FE8538.svs/metadata.json b/features/TCGA-GD-A3OQ-01Z-00-DX1.ED8C9F09-57A9-4915-950A-A61FE2FE8538.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cf696641ca78e0abc5183a9ff654ffee9577e3bc --- /dev/null +++ b/features/TCGA-GD-A3OQ-01Z-00-DX1.ED8C9F09-57A9-4915-950A-A61FE2FE8538.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 8199, "total_number_of_tiles": 8199, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [141848, 34253], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [9, 3], "5": [18, 5], "6": [35, 9], "7": [70, 17], "8": [139, 34], "9": [278, 67], "10": [555, 134], "11": [1109, 268], "12": [2217, 536], "13": [4433, 1071], "14": [8866, 2141], "15": [17731, 4282], "16": [35462, 8564], "17": [70924, 17127], "18": [141848, 34253]}, "level_mpp_mapping": {"0": 64697.1392, "1": 32348.5696, "2": 16174.2848, "3": 8087.1424, "4": 4043.5712, "5": 2021.7856, "6": 1010.8928, "7": 505.4464, "8": 252.7232, "9": 126.3616, "10": 63.1808, "11": 31.5904, "12": 15.7952, "13": 7.8976, "14": 3.9488, "15": 1.9744, "16": 0.9872, "17": 0.4936, "18": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "65d3c6a9f9bbd678133303a8bc8383ab0b88c6196772c435b8827de8a9309f6a"} \ No newline at end of file diff --git a/features/TCGA-GD-A3OS-01Z-00-DX1.5EA796F4-E7F3-4421-BDEA-522BED020B5B.svs/features.npy b/features/TCGA-GD-A3OS-01Z-00-DX1.5EA796F4-E7F3-4421-BDEA-522BED020B5B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..355507b2b947f9bde4c9da7b3210fc31fa9b45c3 --- /dev/null +++ b/features/TCGA-GD-A3OS-01Z-00-DX1.5EA796F4-E7F3-4421-BDEA-522BED020B5B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b4d6d0b8d63fc7c69b67b13f9b85bf9f0924e55ce607f34a16499716a1c490ca +size 53399964 diff --git a/features/TCGA-GD-A3OS-01Z-00-DX1.5EA796F4-E7F3-4421-BDEA-522BED020B5B.svs/mask.npy b/features/TCGA-GD-A3OS-01Z-00-DX1.5EA796F4-E7F3-4421-BDEA-522BED020B5B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3204628dfdcda2eb80cce30e42bfa20eee743b5c --- /dev/null +++ b/features/TCGA-GD-A3OS-01Z-00-DX1.5EA796F4-E7F3-4421-BDEA-522BED020B5B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c83218b8b7785b3e7f4b9916fbead85167e58cb101b4d7ed7486e1b3aaa8b6a1 +size 135135524 diff --git a/features/TCGA-GD-A3OS-01Z-00-DX1.5EA796F4-E7F3-4421-BDEA-522BED020B5B.svs/metadata.json b/features/TCGA-GD-A3OS-01Z-00-DX1.5EA796F4-E7F3-4421-BDEA-522BED020B5B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3840aa5a08cb03271934c179370084bc75bbb4b4 --- /dev/null +++ b/features/TCGA-GD-A3OS-01Z-00-DX1.5EA796F4-E7F3-4421-BDEA-522BED020B5B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 6509, "total_number_of_tiles": 6509, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [147560, 58593], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [10, 4], "5": [19, 8], "6": [37, 15], "7": [73, 29], "8": [145, 58], "9": [289, 115], "10": [577, 229], "11": [1153, 458], "12": [2306, 916], "13": [4612, 1832], "14": [9223, 3663], "15": [18445, 7325], "16": [36890, 14649], "17": [73780, 29297], "18": [147560, 58593]}, "level_mpp_mapping": {"0": 64382.5664, "1": 32191.2832, "2": 16095.6416, "3": 8047.8208, "4": 4023.9104, "5": 2011.9552, "6": 1005.9776, "7": 502.9888, "8": 251.4944, "9": 125.7472, "10": 62.8736, "11": 31.4368, "12": 15.7184, "13": 7.8592, "14": 3.9296, "15": 1.9648, "16": 0.9824, "17": 0.4912, "18": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "02ccbdfdbd7e12256d6be1708343bf2a5c814b07d854a3233f72b0b5d4a9e013"} \ No newline at end of file diff --git a/features/TCGA-GD-A6C6-01Z-00-DX1.5C5F2FA2-6284-4DD8-BE73-D13A88988640.svs/features.npy b/features/TCGA-GD-A6C6-01Z-00-DX1.5C5F2FA2-6284-4DD8-BE73-D13A88988640.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..91ee039843d320aef42473a57adb11761c4b27f4 --- /dev/null +++ b/features/TCGA-GD-A6C6-01Z-00-DX1.5C5F2FA2-6284-4DD8-BE73-D13A88988640.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f409f24872574090a5726adf01e5767dfcb048173660db8071b28d454d3cbf00 +size 48411932 diff --git a/features/TCGA-GD-A6C6-01Z-00-DX1.5C5F2FA2-6284-4DD8-BE73-D13A88988640.svs/mask.npy b/features/TCGA-GD-A6C6-01Z-00-DX1.5C5F2FA2-6284-4DD8-BE73-D13A88988640.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b9955d52f4d5095166e523f4f2c7684e8ce705a8 --- /dev/null +++ b/features/TCGA-GD-A6C6-01Z-00-DX1.5C5F2FA2-6284-4DD8-BE73-D13A88988640.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ed87a7bf14e218fc9fac81a440d4a2c370f29146272dc27e60499359efc82216 +size 123696128 diff --git a/features/TCGA-GD-A6C6-01Z-00-DX1.5C5F2FA2-6284-4DD8-BE73-D13A88988640.svs/metadata.json b/features/TCGA-GD-A6C6-01Z-00-DX1.5C5F2FA2-6284-4DD8-BE73-D13A88988640.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..daae6df4ae693088a6059a23509191eb7cb23d08 --- /dev/null +++ b/features/TCGA-GD-A6C6-01Z-00-DX1.5C5F2FA2-6284-4DD8-BE73-D13A88988640.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 5901, "total_number_of_tiles": 5901, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115192, 68713], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 9], "5": [29, 17], "6": [57, 34], "7": [113, 68], "8": [225, 135], "9": [450, 269], "10": [900, 537], "11": [1800, 1074], "12": [3600, 2148], "13": [7200, 4295], "14": [14399, 8590], "15": [28798, 17179], "16": [57596, 34357], "17": [115192, 68713]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a015f6877d5e3c7e486e51db703b932ab73dd9e0ba90b939ae296895e7fffdf0"} \ No newline at end of file diff --git a/features/TCGA-GD-A76B-01Z-00-DX1.C299842E-F204-4071-AD72-1E1A303B396B.svs/features.npy b/features/TCGA-GD-A76B-01Z-00-DX1.C299842E-F204-4071-AD72-1E1A303B396B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..494e4c31f08fa6e2202bcb33da66158b4a9d372f --- /dev/null +++ b/features/TCGA-GD-A76B-01Z-00-DX1.C299842E-F204-4071-AD72-1E1A303B396B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f2c9730b479ba32520e1ce9f6ec30aa48a675223210518561c6d3ee2cb03f3de +size 29230980 diff --git a/features/TCGA-GD-A76B-01Z-00-DX1.C299842E-F204-4071-AD72-1E1A303B396B.svs/mask.npy b/features/TCGA-GD-A76B-01Z-00-DX1.C299842E-F204-4071-AD72-1E1A303B396B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e81c4fe857c5f9d1b79c4fd8009f2cb7ee3de4ec --- /dev/null +++ b/features/TCGA-GD-A76B-01Z-00-DX1.C299842E-F204-4071-AD72-1E1A303B396B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:26f85d3e37a20d46ec1586bc2c38865601f065687376afcf8fcd3e411c692126 +size 74447528 diff --git a/features/TCGA-GD-A76B-01Z-00-DX1.C299842E-F204-4071-AD72-1E1A303B396B.svs/metadata.json b/features/TCGA-GD-A76B-01Z-00-DX1.C299842E-F204-4071-AD72-1E1A303B396B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9c9cf3a836d67868bd50cc8b4d5e07917585cca7 --- /dev/null +++ b/features/TCGA-GD-A76B-01Z-00-DX1.C299842E-F204-4071-AD72-1E1A303B396B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 3563, "total_number_of_tiles": 3563, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101592, 46895], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [7, 3], "4": [13, 6], "5": [25, 12], "6": [50, 23], "7": [100, 46], "8": [199, 92], "9": [397, 184], "10": [794, 367], "11": [1588, 733], "12": [3175, 1466], "13": [6350, 2931], "14": [12699, 5862], "15": [25398, 11724], "16": [50796, 23448], "17": [101592, 46895]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "6b678328d51cb0a9d30fef307c7098e657021cacabdcc8829721343e3405bbac"} \ No newline at end of file diff --git a/features/TCGA-GU-A42P-01Z-00-DX1.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/features.npy b/features/TCGA-GU-A42P-01Z-00-DX1.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1921ae896ed8d79906b911213cdd263c148d0c18 --- /dev/null +++ b/features/TCGA-GU-A42P-01Z-00-DX1.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b77ab8c3e677266fbb155352631a5dadc7436fb9e288f86c3849fa957aa3de4f +size 215830960 diff --git a/features/TCGA-GU-A42P-01Z-00-DX1.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/mask.npy b/features/TCGA-GU-A42P-01Z-00-DX1.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..28a1def1a41002bc65279361f9d354b4a6a248f6 --- /dev/null +++ b/features/TCGA-GU-A42P-01Z-00-DX1.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2400be94129c9bb8705283cf71cdc68426c8d5282135cf0530dc750fe836233b +size 176743244 diff --git a/features/TCGA-GU-A42P-01Z-00-DX1.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/metadata.json b/features/TCGA-GU-A42P-01Z-00-DX1.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..aca3d70154dc4b2ca0bae026480cf8f850b4950e --- /dev/null +++ b/features/TCGA-GU-A42P-01Z-00-DX1.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26308, "total_number_of_tiles": 26308, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [120903, 93550], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 23], "6": [60, 46], "7": [119, 92], "8": [237, 183], "9": [473, 366], "10": [945, 731], "11": [1890, 1462], "12": [3779, 2924], "13": [7557, 5847], "14": [15113, 11694], "15": [30226, 23388], "16": [60452, 46775], "17": [120903, 93550]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "738cba1fd2c5b6ed1eaf2d8f6880b7ea"} \ No newline at end of file diff --git a/features/TCGA-GU-A42P-01Z-00-DX1.CB13FDE5-C187-4728-83C4-AD1FE4B4731E.svs/features.npy b/features/TCGA-GU-A42P-01Z-00-DX1.CB13FDE5-C187-4728-83C4-AD1FE4B4731E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1921ae896ed8d79906b911213cdd263c148d0c18 --- /dev/null +++ b/features/TCGA-GU-A42P-01Z-00-DX1.CB13FDE5-C187-4728-83C4-AD1FE4B4731E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b77ab8c3e677266fbb155352631a5dadc7436fb9e288f86c3849fa957aa3de4f +size 215830960 diff --git a/features/TCGA-GU-A42P-01Z-00-DX1.CB13FDE5-C187-4728-83C4-AD1FE4B4731E.svs/mask.npy b/features/TCGA-GU-A42P-01Z-00-DX1.CB13FDE5-C187-4728-83C4-AD1FE4B4731E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..28a1def1a41002bc65279361f9d354b4a6a248f6 --- /dev/null +++ b/features/TCGA-GU-A42P-01Z-00-DX1.CB13FDE5-C187-4728-83C4-AD1FE4B4731E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2400be94129c9bb8705283cf71cdc68426c8d5282135cf0530dc750fe836233b +size 176743244 diff --git a/features/TCGA-GU-A42P-01Z-00-DX1.CB13FDE5-C187-4728-83C4-AD1FE4B4731E.svs/metadata.json b/features/TCGA-GU-A42P-01Z-00-DX1.CB13FDE5-C187-4728-83C4-AD1FE4B4731E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..aca3d70154dc4b2ca0bae026480cf8f850b4950e --- /dev/null +++ b/features/TCGA-GU-A42P-01Z-00-DX1.CB13FDE5-C187-4728-83C4-AD1FE4B4731E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26308, "total_number_of_tiles": 26308, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [120903, 93550], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 23], "6": [60, 46], "7": [119, 92], "8": [237, 183], "9": [473, 366], "10": [945, 731], "11": [1890, 1462], "12": [3779, 2924], "13": [7557, 5847], "14": [15113, 11694], "15": [30226, 23388], "16": [60452, 46775], "17": [120903, 93550]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "738cba1fd2c5b6ed1eaf2d8f6880b7ea"} \ No newline at end of file diff --git a/features/TCGA-GU-A42P-01Z-00-DX2.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/features.npy b/features/TCGA-GU-A42P-01Z-00-DX2.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0cb0087d8cf37bc6fba7c9d15ad6bfced61f8006 --- /dev/null +++ b/features/TCGA-GU-A42P-01Z-00-DX2.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:127ed88d6c791dae1e725e54e2a01b3cc2302f4cefb753dbf0ca753fb0ae59e7 +size 183671280 diff --git a/features/TCGA-GU-A42P-01Z-00-DX2.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/mask.npy b/features/TCGA-GU-A42P-01Z-00-DX2.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e9fee066b1eed777afd70ff984064c1ad5722508 --- /dev/null +++ b/features/TCGA-GU-A42P-01Z-00-DX2.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8dfd1304719ff5f8732c18cc2fe7a96d7d5b54ffd4e5bc3f214b41e9ad85d75f +size 143513768 diff --git a/features/TCGA-GU-A42P-01Z-00-DX2.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/metadata.json b/features/TCGA-GU-A42P-01Z-00-DX2.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ba237eac16d93249abb11d8e7f5f35d738be1295 --- /dev/null +++ b/features/TCGA-GU-A42P-01Z-00-DX2.3A4A8614-693F-452C-BB2C-AD16D5AC6F12.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22388, "total_number_of_tiles": 22388, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119520, 76837], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [30, 19], "6": [59, 38], "7": [117, 76], "8": [234, 151], "9": [467, 301], "10": [934, 601], "11": [1868, 1201], "12": [3735, 2402], "13": [7470, 4803], "14": [14940, 9605], "15": [29880, 19210], "16": [59760, 38419], "17": [119520, 76837]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b521f41c1b0df3f1793e34a08b1c6bb6"} \ No newline at end of file diff --git a/features/TCGA-GU-A42Q-01Z-00-DX1.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/features.npy b/features/TCGA-GU-A42Q-01Z-00-DX1.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..275eee20dded587a14af594fe82e93471284ac7e --- /dev/null +++ b/features/TCGA-GU-A42Q-01Z-00-DX1.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:827e09eabd3190c4b109912fb987a69aa4249369d7d793c4ec03fc477137ba35 +size 133938632 diff --git a/features/TCGA-GU-A42Q-01Z-00-DX1.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/mask.npy b/features/TCGA-GU-A42Q-01Z-00-DX1.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6bbb0ffe2703f16578ee787022f0f7c3f4ff4a14 --- /dev/null +++ b/features/TCGA-GU-A42Q-01Z-00-DX1.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:90af1a3a72453209af57814f05f21faa6afebede2d542c44168cf33aff95da65 +size 129172248 diff --git a/features/TCGA-GU-A42Q-01Z-00-DX1.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/metadata.json b/features/TCGA-GU-A42Q-01Z-00-DX1.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..776c552d47ac3c1367d710354daa7d3c6fd31f42 --- /dev/null +++ b/features/TCGA-GU-A42Q-01Z-00-DX1.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16326, "total_number_of_tiles": 16326, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [104719, 78934], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [26, 20], "6": [52, 39], "7": [103, 78], "8": [205, 155], "9": [410, 309], "10": [819, 617], "11": [1637, 1234], "12": [3273, 2467], "13": [6545, 4934], "14": [13090, 9867], "15": [26180, 19734], "16": [52360, 39467], "17": [104719, 78934]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c102d015d19368b1fb57430de77d2913"} \ No newline at end of file diff --git a/features/TCGA-GU-A42Q-01Z-00-DX1.D2C954CF-B767-4584-AA89-8EBD23D54D15.svs/features.npy b/features/TCGA-GU-A42Q-01Z-00-DX1.D2C954CF-B767-4584-AA89-8EBD23D54D15.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..275eee20dded587a14af594fe82e93471284ac7e --- /dev/null +++ b/features/TCGA-GU-A42Q-01Z-00-DX1.D2C954CF-B767-4584-AA89-8EBD23D54D15.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:827e09eabd3190c4b109912fb987a69aa4249369d7d793c4ec03fc477137ba35 +size 133938632 diff --git a/features/TCGA-GU-A42Q-01Z-00-DX1.D2C954CF-B767-4584-AA89-8EBD23D54D15.svs/mask.npy b/features/TCGA-GU-A42Q-01Z-00-DX1.D2C954CF-B767-4584-AA89-8EBD23D54D15.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6bbb0ffe2703f16578ee787022f0f7c3f4ff4a14 --- /dev/null +++ b/features/TCGA-GU-A42Q-01Z-00-DX1.D2C954CF-B767-4584-AA89-8EBD23D54D15.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:90af1a3a72453209af57814f05f21faa6afebede2d542c44168cf33aff95da65 +size 129172248 diff --git a/features/TCGA-GU-A42Q-01Z-00-DX1.D2C954CF-B767-4584-AA89-8EBD23D54D15.svs/metadata.json b/features/TCGA-GU-A42Q-01Z-00-DX1.D2C954CF-B767-4584-AA89-8EBD23D54D15.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..776c552d47ac3c1367d710354daa7d3c6fd31f42 --- /dev/null +++ b/features/TCGA-GU-A42Q-01Z-00-DX1.D2C954CF-B767-4584-AA89-8EBD23D54D15.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16326, "total_number_of_tiles": 16326, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [104719, 78934], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [26, 20], "6": [52, 39], "7": [103, 78], "8": [205, 155], "9": [410, 309], "10": [819, 617], "11": [1637, 1234], "12": [3273, 2467], "13": [6545, 4934], "14": [13090, 9867], "15": [26180, 19734], "16": [52360, 39467], "17": [104719, 78934]}, "level_mpp_mapping": {"0": 32505.856, "1": 16252.928, "2": 8126.464, "3": 4063.232, "4": 2031.616, "5": 1015.808, "6": 507.904, "7": 253.952, "8": 126.976, "9": 63.488, "10": 31.744, "11": 15.872, "12": 7.936, "13": 3.968, "14": 1.984, "15": 0.992, "16": 0.496, "17": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c102d015d19368b1fb57430de77d2913"} \ No newline at end of file diff --git a/features/TCGA-GU-A42Q-01Z-00-DX2.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/features.npy b/features/TCGA-GU-A42Q-01Z-00-DX2.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4edccccc07dcbec44597e26b82b3bd5481ca0683 --- /dev/null +++ b/features/TCGA-GU-A42Q-01Z-00-DX2.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:630177e449cc35c766ea01f04adc7f4c4f4554728751333bd8b79554df347daf +size 81744784 diff --git a/features/TCGA-GU-A42Q-01Z-00-DX2.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/mask.npy b/features/TCGA-GU-A42Q-01Z-00-DX2.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..dbd7b690eb5e3860e173c17b94fe19e730d3ec0d --- /dev/null +++ b/features/TCGA-GU-A42Q-01Z-00-DX2.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bf90af8fab661339732c461a5e107e9fe21c006b4e6390ce30f92c0ebd7a7642 +size 171818584 diff --git a/features/TCGA-GU-A42Q-01Z-00-DX2.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/metadata.json b/features/TCGA-GU-A42Q-01Z-00-DX2.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..84d37fceac8b2206ff02f7631987ca5ffa86389d --- /dev/null +++ b/features/TCGA-GU-A42Q-01Z-00-DX2.91D8B0D2-538F-4411-9B3C-0E1FAE1A0606.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 9964, "total_number_of_tiles": 9964, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [145416, 75605], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [18, 10], "6": [36, 19], "7": [72, 37], "8": [143, 74], "9": [285, 148], "10": [569, 296], "11": [1137, 591], "12": [2273, 1182], "13": [4545, 2363], "14": [9089, 4726], "15": [18177, 9451], "16": [36354, 18902], "17": [72708, 37803], "18": [145416, 75605]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2b402f5da9cc26ea34760a8ea5618e775baf8e082fd06e34253a58f56bb09e5a"} \ No newline at end of file diff --git a/features/TCGA-GU-A42R-01Z-00-DX1.1A14BFD8-DE37-4D10-ACB6-317ECEB930CA.svs/features.npy b/features/TCGA-GU-A42R-01Z-00-DX1.1A14BFD8-DE37-4D10-ACB6-317ECEB930CA.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ea5a19646d2d5964aa03440879062100be774d88 --- /dev/null +++ b/features/TCGA-GU-A42R-01Z-00-DX1.1A14BFD8-DE37-4D10-ACB6-317ECEB930CA.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8d7947106d223afed2f13923b92a026311cc58f84f8095707476112b5e6106f7 +size 203049128 diff --git a/features/TCGA-GU-A42R-01Z-00-DX1.1A14BFD8-DE37-4D10-ACB6-317ECEB930CA.svs/mask.npy b/features/TCGA-GU-A42R-01Z-00-DX1.1A14BFD8-DE37-4D10-ACB6-317ECEB930CA.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9180dbb4e96cea71c70923314c7b13c1eb28b5d3 --- /dev/null +++ b/features/TCGA-GU-A42R-01Z-00-DX1.1A14BFD8-DE37-4D10-ACB6-317ECEB930CA.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:90bda3f1534d82eaf17bb48ce7b350736a028ef969e58314e8eaaf27d610afaf +size 215184020 diff --git a/features/TCGA-GU-A42R-01Z-00-DX1.1A14BFD8-DE37-4D10-ACB6-317ECEB930CA.svs/metadata.json b/features/TCGA-GU-A42R-01Z-00-DX1.1A14BFD8-DE37-4D10-ACB6-317ECEB930CA.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..53f9a781232b210e1fbebc087db2657bbca6f51c --- /dev/null +++ b/features/TCGA-GU-A42R-01Z-00-DX1.1A14BFD8-DE37-4D10-ACB6-317ECEB930CA.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24750, "total_number_of_tiles": 24750, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [146607, 93936], "tile_mpp": 0.496, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [36, 23], "7": [72, 46], "8": [144, 92], "9": [287, 184], "10": [573, 367], "11": [1146, 734], "12": [2291, 1468], "13": [4582, 2936], "14": [9163, 5871], "15": [18326, 11742], "16": [36652, 23484], "17": [73304, 46968], "18": [146607, 93936]}, "level_mpp_mapping": {"0": 65011.712, "1": 32505.856, "2": 16252.928, "3": 8126.464, "4": 4063.232, "5": 2031.616, "6": 1015.808, "7": 507.904, "8": 253.952, "9": 126.976, "10": 63.488, "11": 31.744, "12": 15.872, "13": 7.936, "14": 3.968, "15": 1.984, "16": 0.992, "17": 0.496, "18": 0.248}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a41b6436ed25aa05b6db32d1e00277536bc8a48c30a6984d0199c1d71a9008e7"} \ No newline at end of file diff --git a/features/TCGA-GU-A42R-01Z-00-DX2.B54CCE4D-E4DE-473B-B7C6-5A349FD7F55C.svs/features.npy b/features/TCGA-GU-A42R-01Z-00-DX2.B54CCE4D-E4DE-473B-B7C6-5A349FD7F55C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..23f743a68c33950bad1d980da4a951e2b60de23b --- /dev/null +++ b/features/TCGA-GU-A42R-01Z-00-DX2.B54CCE4D-E4DE-473B-B7C6-5A349FD7F55C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:55daac87bbcd962a2e6e9836f18b99b2ffdfe1494292a084aa7892f3435930ea +size 116964556 diff --git a/features/TCGA-GU-A42R-01Z-00-DX2.B54CCE4D-E4DE-473B-B7C6-5A349FD7F55C.svs/mask.npy b/features/TCGA-GU-A42R-01Z-00-DX2.B54CCE4D-E4DE-473B-B7C6-5A349FD7F55C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7725c6da0edfb162fd7dc9b7d1df2a9d9393999f --- /dev/null +++ b/features/TCGA-GU-A42R-01Z-00-DX2.B54CCE4D-E4DE-473B-B7C6-5A349FD7F55C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6a27df32a1039dc770c1b25abe80bb4e809a22a52e1ad2f487b67c1e19b72adc +size 166244480 diff --git a/features/TCGA-GU-A42R-01Z-00-DX2.B54CCE4D-E4DE-473B-B7C6-5A349FD7F55C.svs/metadata.json b/features/TCGA-GU-A42R-01Z-00-DX2.B54CCE4D-E4DE-473B-B7C6-5A349FD7F55C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..043330e3fdab969d662f820c40f00f1eb72b0cb2 --- /dev/null +++ b/features/TCGA-GU-A42R-01Z-00-DX2.B54CCE4D-E4DE-473B-B7C6-5A349FD7F55C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14257, "total_number_of_tiles": 14257, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [127488, 83450], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 21], "6": [63, 41], "7": [125, 82], "8": [249, 163], "9": [498, 326], "10": [996, 652], "11": [1992, 1304], "12": [3984, 2608], "13": [7968, 5216], "14": [15936, 10432], "15": [31872, 20863], "16": [63744, 41725], "17": [127488, 83450]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5dd32fd91ae07d2e94f5bdd51465b513"} \ No newline at end of file diff --git a/features/TCGA-GU-A762-01Z-00-DX1.F01B133E-3744-4430-9752-FDD25EEF58A3.svs/features.npy b/features/TCGA-GU-A762-01Z-00-DX1.F01B133E-3744-4430-9752-FDD25EEF58A3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2cc0edf7108a62d15cf1fb37cf3197ad732d36a6 --- /dev/null +++ b/features/TCGA-GU-A762-01Z-00-DX1.F01B133E-3744-4430-9752-FDD25EEF58A3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:826433e83aa596b4d5268afb837a1aaecb2ad1a8b359c5d9f5f7e3ad300c44a1 +size 207651572 diff --git a/features/TCGA-GU-A762-01Z-00-DX1.F01B133E-3744-4430-9752-FDD25EEF58A3.svs/mask.npy b/features/TCGA-GU-A762-01Z-00-DX1.F01B133E-3744-4430-9752-FDD25EEF58A3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0d0049b3f10afae27e39c1d9b631cb675452be05 --- /dev/null +++ b/features/TCGA-GU-A762-01Z-00-DX1.F01B133E-3744-4430-9752-FDD25EEF58A3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b5a2b0db5bc0e6074c125bc21f9a44f7ae7bbb67f292cd761a3869344271d15f +size 152162688 diff --git a/features/TCGA-GU-A762-01Z-00-DX1.F01B133E-3744-4430-9752-FDD25EEF58A3.svs/metadata.json b/features/TCGA-GU-A762-01Z-00-DX1.F01B133E-3744-4430-9752-FDD25EEF58A3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0f0f5434649a3fea730d5bc5e24165a3f4e9a016 --- /dev/null +++ b/features/TCGA-GU-A762-01Z-00-DX1.F01B133E-3744-4430-9752-FDD25EEF58A3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25311, "total_number_of_tiles": 25311, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109560, 88878], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 22], "6": [54, 44], "7": [107, 87], "8": [214, 174], "9": [428, 348], "10": [856, 695], "11": [1712, 1389], "12": [3424, 2778], "13": [6848, 5555], "14": [13695, 11110], "15": [27390, 22220], "16": [54780, 44439], "17": [109560, 88878]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "454d4a490feca28ef7a326bc73422445"} \ No newline at end of file diff --git a/features/TCGA-GU-A763-01Z-00-DX1.2B511825-320B-48D7-B8D6-D97894C02667.svs/features.npy b/features/TCGA-GU-A763-01Z-00-DX1.2B511825-320B-48D7-B8D6-D97894C02667.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ad160a0e4b7f64e8ce1f810a725e8802aa0c124d --- /dev/null +++ b/features/TCGA-GU-A763-01Z-00-DX1.2B511825-320B-48D7-B8D6-D97894C02667.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e3abd6caf6fdeb4130a8276f0f5fa93d4df1ce7ab43fed9f2833cd9a4a2e95bd +size 112066768 diff --git a/features/TCGA-GU-A763-01Z-00-DX1.2B511825-320B-48D7-B8D6-D97894C02667.svs/mask.npy b/features/TCGA-GU-A763-01Z-00-DX1.2B511825-320B-48D7-B8D6-D97894C02667.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ddecf16ec87c0c27a32ca00579da0ebac7a13115 --- /dev/null +++ b/features/TCGA-GU-A763-01Z-00-DX1.2B511825-320B-48D7-B8D6-D97894C02667.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a0de850f03f7c441e40f62701194c346405914fd8287a68003d8e603c1c5bd95 +size 115414616 diff --git a/features/TCGA-GU-A763-01Z-00-DX1.2B511825-320B-48D7-B8D6-D97894C02667.svs/metadata.json b/features/TCGA-GU-A763-01Z-00-DX1.2B511825-320B-48D7-B8D6-D97894C02667.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..776f333031458f1aa6e41389e542ed283dbadf81 --- /dev/null +++ b/features/TCGA-GU-A763-01Z-00-DX1.2B511825-320B-48D7-B8D6-D97894C02667.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13660, "total_number_of_tiles": 13660, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123504, 59803], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [8, 4], "4": [16, 8], "5": [31, 15], "6": [61, 30], "7": [121, 59], "8": [242, 117], "9": [483, 234], "10": [965, 468], "11": [1930, 935], "12": [3860, 1869], "13": [7719, 3738], "14": [15438, 7476], "15": [30876, 14951], "16": [61752, 29902], "17": [123504, 59803]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "958551deb11059c575e189a6c2cc6acd"} \ No newline at end of file diff --git a/features/TCGA-GU-A764-01Z-00-DX1.213E1BDD-33DE-454E-BE79-940E5D793D42.svs/features.npy b/features/TCGA-GU-A764-01Z-00-DX1.213E1BDD-33DE-454E-BE79-940E5D793D42.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c373156de6d96e4c8e3939712ba8e42b35c34583 --- /dev/null +++ b/features/TCGA-GU-A764-01Z-00-DX1.213E1BDD-33DE-454E-BE79-940E5D793D42.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c53ae7775fa4c4575684037f0d6ce57c9bc0a9edcdc92364a3f4a027baa3c98a +size 230163348 diff --git a/features/TCGA-GU-A764-01Z-00-DX1.213E1BDD-33DE-454E-BE79-940E5D793D42.svs/mask.npy b/features/TCGA-GU-A764-01Z-00-DX1.213E1BDD-33DE-454E-BE79-940E5D793D42.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..021712fd354e44d54849d4d3a9484f1a9b78a968 --- /dev/null +++ b/features/TCGA-GU-A764-01Z-00-DX1.213E1BDD-33DE-454E-BE79-940E5D793D42.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:df1d7b4416f40f68138145f9293eacc2a10b14d97f8f776dd7ffb8a6f1a383f4 +size 136516104 diff --git a/features/TCGA-GU-A764-01Z-00-DX1.213E1BDD-33DE-454E-BE79-940E5D793D42.svs/metadata.json b/features/TCGA-GU-A764-01Z-00-DX1.213E1BDD-33DE-454E-BE79-940E5D793D42.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1c627cd55ed1666a7ce889a87c7af092694a7f77 --- /dev/null +++ b/features/TCGA-GU-A764-01Z-00-DX1.213E1BDD-33DE-454E-BE79-940E5D793D42.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 28055, "total_number_of_tiles": 28055, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97608, 89496], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [24, 22], "6": [48, 44], "7": [96, 88], "8": [191, 175], "9": [382, 350], "10": [763, 700], "11": [1526, 1399], "12": [3051, 2797], "13": [6101, 5594], "14": [12201, 11187], "15": [24402, 22374], "16": [48804, 44748], "17": [97608, 89496]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8a527164a64149de7a042ec8653558fa"} \ No newline at end of file diff --git a/features/TCGA-GU-A766-01Z-00-DX1.72BD6744-E817-4B15-BF58-64BDBC1943FF.svs/features.npy b/features/TCGA-GU-A766-01Z-00-DX1.72BD6744-E817-4B15-BF58-64BDBC1943FF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..828f0a6b771f2ec9d6aed60bb42d3d2071c50405 --- /dev/null +++ b/features/TCGA-GU-A766-01Z-00-DX1.72BD6744-E817-4B15-BF58-64BDBC1943FF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:930ec513181bfff6aa791ca9850a0e58f912264c8c7d9d4bf6ab1e2ffaa9e902 +size 162874140 diff --git a/features/TCGA-GU-A766-01Z-00-DX1.72BD6744-E817-4B15-BF58-64BDBC1943FF.svs/mask.npy b/features/TCGA-GU-A766-01Z-00-DX1.72BD6744-E817-4B15-BF58-64BDBC1943FF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5568f4c529978d3525c58378adc8d26d7485d7a0 --- /dev/null +++ b/features/TCGA-GU-A766-01Z-00-DX1.72BD6744-E817-4B15-BF58-64BDBC1943FF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c8574b51887484e9f496bcbf942017ab7403f551c4c421c67d3c27eb6e6a7833 +size 112301120 diff --git a/features/TCGA-GU-A766-01Z-00-DX1.72BD6744-E817-4B15-BF58-64BDBC1943FF.svs/metadata.json b/features/TCGA-GU-A766-01Z-00-DX1.72BD6744-E817-4B15-BF58-64BDBC1943FF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8577c470fe47ff780e6918cc0e7f595a98af0574 --- /dev/null +++ b/features/TCGA-GU-A766-01Z-00-DX1.72BD6744-E817-4B15-BF58-64BDBC1943FF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19853, "total_number_of_tiles": 19853, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115536, 62199], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [8, 4], "4": [15, 8], "5": [29, 16], "6": [57, 31], "7": [113, 61], "8": [226, 122], "9": [452, 243], "10": [903, 486], "11": [1806, 972], "12": [3611, 1944], "13": [7221, 3888], "14": [14442, 7775], "15": [28884, 15550], "16": [57768, 31100], "17": [115536, 62199]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1a1248fcfbfdfe234475eeffb291fa8e"} \ No newline at end of file diff --git a/features/TCGA-GU-A767-01Z-00-DX1.A8B13490-D25A-45E1-A2D8-02125DB3A6B2.svs/features.npy b/features/TCGA-GU-A767-01Z-00-DX1.A8B13490-D25A-45E1-A2D8-02125DB3A6B2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7c68052e1d5515e3f64e79a0c250bd2d22a9e5d9 --- /dev/null +++ b/features/TCGA-GU-A767-01Z-00-DX1.A8B13490-D25A-45E1-A2D8-02125DB3A6B2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c737772c49c9c835732afb1845f4bd22b6d91d2fca5df26798e2c4d6cb9fba8b +size 112780516 diff --git a/features/TCGA-GU-A767-01Z-00-DX1.A8B13490-D25A-45E1-A2D8-02125DB3A6B2.svs/mask.npy b/features/TCGA-GU-A767-01Z-00-DX1.A8B13490-D25A-45E1-A2D8-02125DB3A6B2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a931db5cface6267cf6913d5c8bf683c09202c25 --- /dev/null +++ b/features/TCGA-GU-A767-01Z-00-DX1.A8B13490-D25A-45E1-A2D8-02125DB3A6B2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:08ba590cfc2d93b7b9fd089828282adf86f9913a3fc61d19254188f648ad5743 +size 92197976 diff --git a/features/TCGA-GU-A767-01Z-00-DX1.A8B13490-D25A-45E1-A2D8-02125DB3A6B2.svs/metadata.json b/features/TCGA-GU-A767-01Z-00-DX1.A8B13490-D25A-45E1-A2D8-02125DB3A6B2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..01a4faf9727ebc63c6ab16a076e3920441f428c4 --- /dev/null +++ b/features/TCGA-GU-A767-01Z-00-DX1.A8B13490-D25A-45E1-A2D8-02125DB3A6B2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13747, "total_number_of_tiles": 13747, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [69720, 84617], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 6], "4": [9, 11], "5": [18, 21], "6": [35, 42], "7": [69, 83], "8": [137, 166], "9": [273, 331], "10": [545, 662], "11": [1090, 1323], "12": [2179, 2645], "13": [4358, 5289], "14": [8715, 10578], "15": [17430, 21155], "16": [34860, 42309], "17": [69720, 84617]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "097f6d0e469c485dde7f1f4375ed511d"} \ No newline at end of file diff --git a/features/TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs/features.npy b/features/TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..92fde1963f287585760a1a6b7ddbf3449fb991af --- /dev/null +++ b/features/TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a066d44d7e822e578ad1292c00eed2e3586702c120a02b27653feb29685a2c8d +size 148886320 diff --git a/features/TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs/mask.npy b/features/TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f653149c6089d3ac1dd6a5b9bf4368b2223396b4 --- /dev/null +++ b/features/TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:250e95a57bc35a56025dc40bd3f10ce0416619d984b702941a5703c5acd4bab4 +size 134197184 diff --git a/features/TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs/metadata.json b/features/TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4bad9ae8db7c329d23547b01de59eb02b23e747e --- /dev/null +++ b/features/TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18148, "total_number_of_tiles": 18148, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [95616, 89815], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [24, 22], "6": [47, 44], "7": [94, 88], "8": [187, 176], "9": [374, 351], "10": [747, 702], "11": [1494, 1404], "12": [2988, 2807], "13": [5976, 5614], "14": [11952, 11227], "15": [23904, 22454], "16": [47808, 44908], "17": [95616, 89815]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8c6d2f2ca457910d25b199c93206ee0b"} \ No newline at end of file diff --git a/features/TCGA-GU-AATP-01Z-00-DX1.0D8EC37C-88E7-49D5-A76D-F0A4A3FD8AE4.svs/features.npy b/features/TCGA-GU-AATP-01Z-00-DX1.0D8EC37C-88E7-49D5-A76D-F0A4A3FD8AE4.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8b1e114d3635883d99979453dedaf2377427d038 --- /dev/null +++ b/features/TCGA-GU-AATP-01Z-00-DX1.0D8EC37C-88E7-49D5-A76D-F0A4A3FD8AE4.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cf8441e06c12b82afe13b17e7346ce618d30a002289e05429a045ae9dc9e695d +size 169109180 diff --git a/features/TCGA-GU-AATP-01Z-00-DX1.0D8EC37C-88E7-49D5-A76D-F0A4A3FD8AE4.svs/mask.npy b/features/TCGA-GU-AATP-01Z-00-DX1.0D8EC37C-88E7-49D5-A76D-F0A4A3FD8AE4.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b40afdc80d09bcb83d03c63283e312b1ed136e56 --- /dev/null +++ b/features/TCGA-GU-AATP-01Z-00-DX1.0D8EC37C-88E7-49D5-A76D-F0A4A3FD8AE4.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5bd3e62f5973ba633955d63f9ff389f690277b8055a95f3c7ea5e98922221369 +size 136760144 diff --git a/features/TCGA-GU-AATP-01Z-00-DX1.0D8EC37C-88E7-49D5-A76D-F0A4A3FD8AE4.svs/metadata.json b/features/TCGA-GU-AATP-01Z-00-DX1.0D8EC37C-88E7-49D5-A76D-F0A4A3FD8AE4.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e0d9c5f7a7816861cd8c135858e93663ceb1e024 --- /dev/null +++ b/features/TCGA-GU-AATP-01Z-00-DX1.0D8EC37C-88E7-49D5-A76D-F0A4A3FD8AE4.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20613, "total_number_of_tiles": 20613, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97608, 89657], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [24, 22], "6": [48, 44], "7": [96, 88], "8": [191, 176], "9": [382, 351], "10": [763, 701], "11": [1526, 1401], "12": [3051, 2802], "13": [6101, 5604], "14": [12201, 11208], "15": [24402, 22415], "16": [48804, 44829], "17": [97608, 89657]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c519e501bd50cfbcef2e82a862c38ae1"} \ No newline at end of file diff --git a/features/TCGA-GU-AATQ-01Z-00-DX1.6D436809-1238-44CA-9CFC-03DC2277C192.svs/features.npy b/features/TCGA-GU-AATQ-01Z-00-DX1.6D436809-1238-44CA-9CFC-03DC2277C192.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d258278f59ada0c334fc4f672a58a41bcf4f9808 --- /dev/null +++ b/features/TCGA-GU-AATQ-01Z-00-DX1.6D436809-1238-44CA-9CFC-03DC2277C192.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb72bbe690cfcdcd5beac102dcffae4bca5c0f4e4f416e508e0610c6eef8c85e +size 137646840 diff --git a/features/TCGA-GU-AATQ-01Z-00-DX1.6D436809-1238-44CA-9CFC-03DC2277C192.svs/mask.npy b/features/TCGA-GU-AATQ-01Z-00-DX1.6D436809-1238-44CA-9CFC-03DC2277C192.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..066891d011ac3a9faa0f72a09f087bdd10f40baa --- /dev/null +++ b/features/TCGA-GU-AATQ-01Z-00-DX1.6D436809-1238-44CA-9CFC-03DC2277C192.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8ed2c5bd1c2d7bd8ff67a0c74a971dd0e503cb6c989e2bc1ef8650d1d081c36e +size 175642976 diff --git a/features/TCGA-GU-AATQ-01Z-00-DX1.6D436809-1238-44CA-9CFC-03DC2277C192.svs/metadata.json b/features/TCGA-GU-AATQ-01Z-00-DX1.6D436809-1238-44CA-9CFC-03DC2277C192.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bfefb05a71be473b0633b9ef2d8b71ccb13cdfc7 --- /dev/null +++ b/features/TCGA-GU-AATQ-01Z-00-DX1.6D436809-1238-44CA-9CFC-03DC2277C192.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16778, "total_number_of_tiles": 16778, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125496, 89553], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 22], "6": [62, 44], "7": [123, 88], "8": [246, 175], "9": [491, 350], "10": [981, 700], "11": [1961, 1400], "12": [3922, 2799], "13": [7844, 5598], "14": [15687, 11195], "15": [31374, 22389], "16": [62748, 44777], "17": [125496, 89553]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "dfd6aa0d11e8fc6cd3639502b35d22dc"} \ No newline at end of file diff --git a/features/TCGA-GV-A3JV-01Z-00-DX1.F071374F-1290-4A36-9466-D6F1F3EBC17E.svs/features.npy b/features/TCGA-GV-A3JV-01Z-00-DX1.F071374F-1290-4A36-9466-D6F1F3EBC17E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ef174fed217ee3c3d84d81a121b578f86b8054b8 --- /dev/null +++ b/features/TCGA-GV-A3JV-01Z-00-DX1.F071374F-1290-4A36-9466-D6F1F3EBC17E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d5d472d0d475c25a5b2aa88288f8fc9309781d41d49e496d47e03029d4079ba3 +size 134759032 diff --git a/features/TCGA-GV-A3JV-01Z-00-DX1.F071374F-1290-4A36-9466-D6F1F3EBC17E.svs/mask.npy b/features/TCGA-GV-A3JV-01Z-00-DX1.F071374F-1290-4A36-9466-D6F1F3EBC17E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..78a1eed06779abe5be0622372af7766812add31e --- /dev/null +++ b/features/TCGA-GV-A3JV-01Z-00-DX1.F071374F-1290-4A36-9466-D6F1F3EBC17E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:aec7bef4de8b6a65616d942a184f8895885e278ad447c67410b398055de0db8b +size 136939184 diff --git a/features/TCGA-GV-A3JV-01Z-00-DX1.F071374F-1290-4A36-9466-D6F1F3EBC17E.svs/metadata.json b/features/TCGA-GV-A3JV-01Z-00-DX1.F071374F-1290-4A36-9466-D6F1F3EBC17E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3680a9220ca309feaf2c86fda2c1d3cc930862ec --- /dev/null +++ b/features/TCGA-GV-A3JV-01Z-00-DX1.F071374F-1290-4A36-9466-D6F1F3EBC17E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16426, "total_number_of_tiles": 16426, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101559, 86274], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [25, 22], "6": [50, 43], "7": [100, 85], "8": [199, 169], "9": [397, 338], "10": [794, 675], "11": [1587, 1349], "12": [3174, 2697], "13": [6348, 5393], "14": [12695, 10785], "15": [25390, 21569], "16": [50780, 43137], "17": [101559, 86274]}, "level_mpp_mapping": {"0": 32492.7488, "1": 16246.3744, "2": 8123.1872, "3": 4061.5936, "4": 2030.7968, "5": 1015.3984, "6": 507.6992, "7": 253.8496, "8": 126.9248, "9": 63.4624, "10": 31.7312, "11": 15.8656, "12": 7.9328, "13": 3.9664, "14": 1.9832, "15": 0.9916, "16": 0.4958, "17": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8d4870ec5d1c87ecc1bbbec3494211a3f70bf2b16e94413758af1ac5c8b2294c"} \ No newline at end of file diff --git a/features/TCGA-GV-A3JW-01Z-00-DX1.152AD6E5-D30A-4D94-A793-3DDF3828625C.svs/features.npy b/features/TCGA-GV-A3JW-01Z-00-DX1.152AD6E5-D30A-4D94-A793-3DDF3828625C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..775c38ca31e26b57b3732847297f23b773234da4 --- /dev/null +++ b/features/TCGA-GV-A3JW-01Z-00-DX1.152AD6E5-D30A-4D94-A793-3DDF3828625C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a08ccf2579acfb1d676bd32677e02fd6b03da983b2f97b5bd1cadae478c31c99 +size 124889620 diff --git a/features/TCGA-GV-A3JW-01Z-00-DX1.152AD6E5-D30A-4D94-A793-3DDF3828625C.svs/mask.npy b/features/TCGA-GV-A3JW-01Z-00-DX1.152AD6E5-D30A-4D94-A793-3DDF3828625C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a985e09fe39f8f63581ee1cc1da8b1fff42aa4a9 --- /dev/null +++ b/features/TCGA-GV-A3JW-01Z-00-DX1.152AD6E5-D30A-4D94-A793-3DDF3828625C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ea905d30af9fd9e022f179f2c77150818afcaa9e52588942d678667d1ec737b1 +size 145955288 diff --git a/features/TCGA-GV-A3JW-01Z-00-DX1.152AD6E5-D30A-4D94-A793-3DDF3828625C.svs/metadata.json b/features/TCGA-GV-A3JW-01Z-00-DX1.152AD6E5-D30A-4D94-A793-3DDF3828625C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4bf53b08c46996f5384fd3a5b06249ebdbb12db8 --- /dev/null +++ b/features/TCGA-GV-A3JW-01Z-00-DX1.152AD6E5-D30A-4D94-A793-3DDF3828625C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15223, "total_number_of_tiles": 15223, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121679, 76757], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [30, 19], "6": [60, 38], "7": [119, 75], "8": [238, 150], "9": [476, 300], "10": [951, 600], "11": [1902, 1200], "12": [3803, 2399], "13": [7605, 4798], "14": [15210, 9595], "15": [30420, 19190], "16": [60840, 38379], "17": [121679, 76757]}, "level_mpp_mapping": {"0": 32492.7488, "1": 16246.3744, "2": 8123.1872, "3": 4061.5936, "4": 2030.7968, "5": 1015.3984, "6": 507.6992, "7": 253.8496, "8": 126.9248, "9": 63.4624, "10": 31.7312, "11": 15.8656, "12": 7.9328, "13": 3.9664, "14": 1.9832, "15": 0.9916, "16": 0.4958, "17": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f8c025165adb756ad1275ecab4f4b37a2167c5c92dcd1f37c232f8d60303397f"} \ No newline at end of file diff --git a/features/TCGA-GV-A3JX-01Z-00-DX1.36A00B8A-662D-43EE-AB52-CBBBF373BCFF.svs/features.npy b/features/TCGA-GV-A3JX-01Z-00-DX1.36A00B8A-662D-43EE-AB52-CBBBF373BCFF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ec00abbd668af0146e5bbf3e64fa096c02e8f7e3 --- /dev/null +++ b/features/TCGA-GV-A3JX-01Z-00-DX1.36A00B8A-662D-43EE-AB52-CBBBF373BCFF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fe0d47904edb47e886c7f6fea433ed2440586deb7c1ed0e5967598aa0cd77b81 +size 116677416 diff --git a/features/TCGA-GV-A3JX-01Z-00-DX1.36A00B8A-662D-43EE-AB52-CBBBF373BCFF.svs/mask.npy b/features/TCGA-GV-A3JX-01Z-00-DX1.36A00B8A-662D-43EE-AB52-CBBBF373BCFF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b00fde2d0e2ae164d931d207e00856fdfcd7df26 --- /dev/null +++ b/features/TCGA-GV-A3JX-01Z-00-DX1.36A00B8A-662D-43EE-AB52-CBBBF373BCFF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b758f48ab815d6af8301abde95167b1089fbee8b97c8bc3ee95b4ee6030e503d +size 133264888 diff --git a/features/TCGA-GV-A3JX-01Z-00-DX1.36A00B8A-662D-43EE-AB52-CBBBF373BCFF.svs/metadata.json b/features/TCGA-GV-A3JX-01Z-00-DX1.36A00B8A-662D-43EE-AB52-CBBBF373BCFF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ea41255094e0a76274602212f5c5f7351de32c65 --- /dev/null +++ b/features/TCGA-GV-A3JX-01Z-00-DX1.36A00B8A-662D-43EE-AB52-CBBBF373BCFF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14222, "total_number_of_tiles": 14222, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113056, 75432], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [28, 19], "6": [56, 37], "7": [111, 74], "8": [221, 148], "9": [442, 295], "10": [884, 590], "11": [1767, 1179], "12": [3533, 2358], "13": [7066, 4715], "14": [14132, 9429], "15": [28264, 18858], "16": [56528, 37716], "17": [113056, 75432]}, "level_mpp_mapping": {"0": 32492.7488, "1": 16246.3744, "2": 8123.1872, "3": 4061.5936, "4": 2030.7968, "5": 1015.3984, "6": 507.6992, "7": 253.8496, "8": 126.9248, "9": 63.4624, "10": 31.7312, "11": 15.8656, "12": 7.9328, "13": 3.9664, "14": 1.9832, "15": 0.9916, "16": 0.4958, "17": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9d8db74f443dd523788bc7c5706e434b1d595fae2d5b462a2680d042c6209203"} \ No newline at end of file diff --git a/features/TCGA-GV-A3JZ-01Z-00-DX1.5DFDE227-D52D-481F-A8D8-28DF25096BD9.svs/features.npy b/features/TCGA-GV-A3JZ-01Z-00-DX1.5DFDE227-D52D-481F-A8D8-28DF25096BD9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..218a140017a451ee1220f9ec2162f9b8209c82e1 --- /dev/null +++ b/features/TCGA-GV-A3JZ-01Z-00-DX1.5DFDE227-D52D-481F-A8D8-28DF25096BD9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f35eb78034f7180fea43246be20b9e0a44ab42835e44ab08cb69f9674953c4ec +size 188905432 diff --git a/features/TCGA-GV-A3JZ-01Z-00-DX1.5DFDE227-D52D-481F-A8D8-28DF25096BD9.svs/mask.npy b/features/TCGA-GV-A3JZ-01Z-00-DX1.5DFDE227-D52D-481F-A8D8-28DF25096BD9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..432690b627b199c6b344219fb1f6c8b17d15a739 --- /dev/null +++ b/features/TCGA-GV-A3JZ-01Z-00-DX1.5DFDE227-D52D-481F-A8D8-28DF25096BD9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:782216938ce90ff2ad8ae57d50370a371ea22634d902a94dc0f8625176c2d8b1 +size 132717008 diff --git a/features/TCGA-GV-A3JZ-01Z-00-DX1.5DFDE227-D52D-481F-A8D8-28DF25096BD9.svs/metadata.json b/features/TCGA-GV-A3JZ-01Z-00-DX1.5DFDE227-D52D-481F-A8D8-28DF25096BD9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..831c4cacc9a948082c306956d0d1d6206a59d180 --- /dev/null +++ b/features/TCGA-GV-A3JZ-01Z-00-DX1.5DFDE227-D52D-481F-A8D8-28DF25096BD9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23026, "total_number_of_tiles": 23026, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109224, 77750], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 19], "6": [54, 38], "7": [107, 76], "8": [214, 152], "9": [427, 304], "10": [854, 608], "11": [1707, 1215], "12": [3414, 2430], "13": [6827, 4860], "14": [13653, 9719], "15": [27306, 19438], "16": [54612, 38875], "17": [109224, 77750]}, "level_mpp_mapping": {"0": 32492.7488, "1": 16246.3744, "2": 8123.1872, "3": 4061.5936, "4": 2030.7968, "5": 1015.3984, "6": 507.6992, "7": 253.8496, "8": 126.9248, "9": 63.4624, "10": 31.7312, "11": 15.8656, "12": 7.9328, "13": 3.9664, "14": 1.9832, "15": 0.9916, "16": 0.4958, "17": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8664cf322130b0a07e43ac750a6420e814a519707c6f409e466cb7d7eca28ec9"} \ No newline at end of file diff --git a/features/TCGA-GV-A3QF-01Z-00-DX1.C59696CF-C415-46AD-B6D6-70A022AC10FA.svs/features.npy b/features/TCGA-GV-A3QF-01Z-00-DX1.C59696CF-C415-46AD-B6D6-70A022AC10FA.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..38e97ce934159f8c14df92cffb6c81a44cd7d605 --- /dev/null +++ b/features/TCGA-GV-A3QF-01Z-00-DX1.C59696CF-C415-46AD-B6D6-70A022AC10FA.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bf74e924e64719ef48f786ef4d1085cedc9a7d21522eeecb80777f9b26a34d13 +size 150765036 diff --git a/features/TCGA-GV-A3QF-01Z-00-DX1.C59696CF-C415-46AD-B6D6-70A022AC10FA.svs/mask.npy b/features/TCGA-GV-A3QF-01Z-00-DX1.C59696CF-C415-46AD-B6D6-70A022AC10FA.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0609c427e1b1799d6a72026a62e20644f6edbd74 --- /dev/null +++ b/features/TCGA-GV-A3QF-01Z-00-DX1.C59696CF-C415-46AD-B6D6-70A022AC10FA.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c91b7e835f7860d2b29119b9b0691184bb843594cd5458a361a92b1cb85bef92 +size 167628992 diff --git a/features/TCGA-GV-A3QF-01Z-00-DX1.C59696CF-C415-46AD-B6D6-70A022AC10FA.svs/metadata.json b/features/TCGA-GV-A3QF-01Z-00-DX1.C59696CF-C415-46AD-B6D6-70A022AC10FA.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fbcce9c95abb4f767a053bbc40df89bd99a8d779 --- /dev/null +++ b/features/TCGA-GV-A3QF-01Z-00-DX1.C59696CF-C415-46AD-B6D6-70A022AC10FA.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18377, "total_number_of_tiles": 18377, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [116889, 91767], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 23], "6": [58, 45], "7": [115, 90], "8": [229, 180], "9": [457, 359], "10": [914, 717], "11": [1827, 1434], "12": [3653, 2868], "13": [7306, 5736], "14": [14612, 11471], "15": [29223, 22942], "16": [58445, 45884], "17": [116889, 91767]}, "level_mpp_mapping": {"0": 32492.7488, "1": 16246.3744, "2": 8123.1872, "3": 4061.5936, "4": 2030.7968, "5": 1015.3984, "6": 507.6992, "7": 253.8496, "8": 126.9248, "9": 63.4624, "10": 31.7312, "11": 15.8656, "12": 7.9328, "13": 3.9664, "14": 1.9832, "15": 0.9916, "16": 0.4958, "17": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ac5f4d50049f2e5d239389476265b854"} \ No newline at end of file diff --git a/features/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.svs/features.npy b/features/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..46a97ce81a5aa8c4a05582c2dbdc4d2699ac2bf7 --- /dev/null +++ b/features/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:88ca325a7f342d01b6699bcf2c45fd893a0da13b3cb8cf6076a47ef3d22ed086 +size 231492396 diff --git a/features/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.svs/mask.npy b/features/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e51afcee195c19e5efc197d2831667cef0c8b670 --- /dev/null +++ b/features/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4085bb49c7f9efe63422b1d334a493f6a7bb43981956ec1f417d1eab7da96706 +size 146548968 diff --git a/features/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.svs/metadata.json b/features/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e02b96a8114cc95fd4ec0c19e9f84a2d9a5e4892 --- /dev/null +++ b/features/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 28217, "total_number_of_tiles": 28217, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113056, 82946], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [28, 21], "6": [56, 41], "7": [111, 82], "8": [221, 163], "9": [442, 325], "10": [884, 649], "11": [1767, 1297], "12": [3533, 2593], "13": [7066, 5185], "14": [14132, 10369], "15": [28264, 20737], "16": [56528, 41473], "17": [113056, 82946]}, "level_mpp_mapping": {"0": 32492.7488, "1": 16246.3744, "2": 8123.1872, "3": 4061.5936, "4": 2030.7968, "5": 1015.3984, "6": 507.6992, "7": 253.8496, "8": 126.9248, "9": 63.4624, "10": 31.7312, "11": 15.8656, "12": 7.9328, "13": 3.9664, "14": 1.9832, "15": 0.9916, "16": 0.4958, "17": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a2c48a1abfff7ad24a87291fde4d31d1"} \ No newline at end of file diff --git a/features/TCGA-GV-A3QH-01Z-00-DX1.A87C25E1-8199-4557-944B-9ABD1A70ADE9.svs/features.npy b/features/TCGA-GV-A3QH-01Z-00-DX1.A87C25E1-8199-4557-944B-9ABD1A70ADE9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7da1cdf7fea87df638cbec22bf0b8333eb2e973b --- /dev/null +++ b/features/TCGA-GV-A3QH-01Z-00-DX1.A87C25E1-8199-4557-944B-9ABD1A70ADE9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f6a2942c777f23c3c9b39759629f5d3e910ecf53db593fb3eb3c87a330899919 +size 129500268 diff --git a/features/TCGA-GV-A3QH-01Z-00-DX1.A87C25E1-8199-4557-944B-9ABD1A70ADE9.svs/mask.npy b/features/TCGA-GV-A3QH-01Z-00-DX1.A87C25E1-8199-4557-944B-9ABD1A70ADE9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..aee47a8bab3d4ca088af929f4549824b977048ef --- /dev/null +++ b/features/TCGA-GV-A3QH-01Z-00-DX1.A87C25E1-8199-4557-944B-9ABD1A70ADE9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4511776b01185c0394b052f74f872618088caf4f48ef5e4ecf972faf5431a3b0 +size 151608832 diff --git a/features/TCGA-GV-A3QH-01Z-00-DX1.A87C25E1-8199-4557-944B-9ABD1A70ADE9.svs/metadata.json b/features/TCGA-GV-A3QH-01Z-00-DX1.A87C25E1-8199-4557-944B-9ABD1A70ADE9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..78f403447959b2e28c4a53c4525726cbd1ee1fea --- /dev/null +++ b/features/TCGA-GV-A3QH-01Z-00-DX1.A87C25E1-8199-4557-944B-9ABD1A70ADE9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15785, "total_number_of_tiles": 15785, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [130302, 74456], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [32, 19], "6": [64, 37], "7": [128, 73], "8": [255, 146], "9": [509, 291], "10": [1018, 582], "11": [2036, 1164], "12": [4072, 2327], "13": [8144, 4654], "14": [16288, 9307], "15": [32576, 18614], "16": [65151, 37228], "17": [130302, 74456]}, "level_mpp_mapping": {"0": 32492.7488, "1": 16246.3744, "2": 8123.1872, "3": 4061.5936, "4": 2030.7968, "5": 1015.3984, "6": 507.6992, "7": 253.8496, "8": 126.9248, "9": 63.4624, "10": 31.7312, "11": 15.8656, "12": 7.9328, "13": 3.9664, "14": 1.9832, "15": 0.9916, "16": 0.4958, "17": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7f666e8dbc31a74ffd778a7d7cd32380be3d80c77c12567d3fedcde803a383ea"} \ No newline at end of file diff --git a/features/TCGA-GV-A3QI-01Z-00-DX1.0B9889AC-06C7-405F-B300-D93EB0F19D9A.svs/features.npy b/features/TCGA-GV-A3QI-01Z-00-DX1.0B9889AC-06C7-405F-B300-D93EB0F19D9A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c3011e0469c1e782a6a8895a5c06d9137cf3aae9 --- /dev/null +++ b/features/TCGA-GV-A3QI-01Z-00-DX1.0B9889AC-06C7-405F-B300-D93EB0F19D9A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0d383ab59e27f1b3200f2741091cc08dc1dd8560626df2e6d0860b2bc1280ea6 +size 164670816 diff --git a/features/TCGA-GV-A3QI-01Z-00-DX1.0B9889AC-06C7-405F-B300-D93EB0F19D9A.svs/mask.npy b/features/TCGA-GV-A3QI-01Z-00-DX1.0B9889AC-06C7-405F-B300-D93EB0F19D9A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..34bb1704cce74c4be3c5bbe4db2bf0ceece90b04 --- /dev/null +++ b/features/TCGA-GV-A3QI-01Z-00-DX1.0B9889AC-06C7-405F-B300-D93EB0F19D9A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c1d2d0d4af4ae40d8c7dbe65f7d00bf13b00e51e64419dcfca7bc1cada82f1d2 +size 133845020 diff --git a/features/TCGA-GV-A3QI-01Z-00-DX1.0B9889AC-06C7-405F-B300-D93EB0F19D9A.svs/metadata.json b/features/TCGA-GV-A3QI-01Z-00-DX1.0B9889AC-06C7-405F-B300-D93EB0F19D9A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4639291b9071d23c6248451224f70a2c8f577fa1 --- /dev/null +++ b/features/TCGA-GV-A3QI-01Z-00-DX1.0B9889AC-06C7-405F-B300-D93EB0F19D9A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20072, "total_number_of_tiles": 20072, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107308, 79816], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 20], "6": [53, 39], "7": [105, 78], "8": [210, 156], "9": [420, 312], "10": [839, 624], "11": [1677, 1248], "12": [3354, 2495], "13": [6707, 4989], "14": [13414, 9977], "15": [26827, 19954], "16": [53654, 39908], "17": [107308, 79816]}, "level_mpp_mapping": {"0": 32492.7488, "1": 16246.3744, "2": 8123.1872, "3": 4061.5936, "4": 2030.7968, "5": 1015.3984, "6": 507.6992, "7": 253.8496, "8": 126.9248, "9": 63.4624, "10": 31.7312, "11": 15.8656, "12": 7.9328, "13": 3.9664, "14": 1.9832, "15": 0.9916, "16": 0.4958, "17": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1376b1adf22a3b4a302077e7762c6d2f"} \ No newline at end of file diff --git a/features/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.svs/features.npy b/features/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..28b8d5a6f1b6b4865762050c624f44ee8705106a --- /dev/null +++ b/features/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e016c8919d6268173fefeb516a26b609ae820058e309823dbbd0346295c62ba1 +size 268115052 diff --git a/features/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.svs/mask.npy b/features/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..67949d236f53fb8839be28ece6b2093366e9dde0 --- /dev/null +++ b/features/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f1b575461098f82d126970bf9f53cd9c179db45d7f512fa4068c8aef0c9048ef +size 153935324 diff --git a/features/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.svs/metadata.json b/features/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..67232e51624c4831efa4015d0ca0fd73c48539bd --- /dev/null +++ b/features/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32681, "total_number_of_tiles": 32681, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109224, 90186], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [54, 45], "7": [107, 89], "8": [214, 177], "9": [427, 353], "10": [854, 705], "11": [1707, 1410], "12": [3414, 2819], "13": [6827, 5637], "14": [13653, 11274], "15": [27306, 22547], "16": [54612, 45093], "17": [109224, 90186]}, "level_mpp_mapping": {"0": 32492.7488, "1": 16246.3744, "2": 8123.1872, "3": 4061.5936, "4": 2030.7968, "5": 1015.3984, "6": 507.6992, "7": 253.8496, "8": 126.9248, "9": 63.4624, "10": 31.7312, "11": 15.8656, "12": 7.9328, "13": 3.9664, "14": 1.9832, "15": 0.9916, "16": 0.4958, "17": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a9a9a5a3762bd743686dd525958c139dae60c9b8ca22dc0c5d257c2d8f441b92"} \ No newline at end of file diff --git a/features/TCGA-GV-A40E-01Z-00-DX1.6313DD1A-6E65-4775-82DC-58AD4EF81D32.svs/features.npy b/features/TCGA-GV-A40E-01Z-00-DX1.6313DD1A-6E65-4775-82DC-58AD4EF81D32.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..be83cbf923cb3068e7c2d6c2df4302c211aa77cb --- /dev/null +++ b/features/TCGA-GV-A40E-01Z-00-DX1.6313DD1A-6E65-4775-82DC-58AD4EF81D32.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1ea1edde2a1b442c1495ddee2e1a4d5869a0e82007b56726d0bd7fce14b6aa60 +size 153357500 diff --git a/features/TCGA-GV-A40E-01Z-00-DX1.6313DD1A-6E65-4775-82DC-58AD4EF81D32.svs/mask.npy b/features/TCGA-GV-A40E-01Z-00-DX1.6313DD1A-6E65-4775-82DC-58AD4EF81D32.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..2fbad8e2ff4dfd10e1127589b8edf6808c525e27 --- /dev/null +++ b/features/TCGA-GV-A40E-01Z-00-DX1.6313DD1A-6E65-4775-82DC-58AD4EF81D32.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d91e9f93977202da099519d8d9d8dda01812259de6d03609086f37b6b4022437 +size 213826160 diff --git a/features/TCGA-GV-A40E-01Z-00-DX1.6313DD1A-6E65-4775-82DC-58AD4EF81D32.svs/metadata.json b/features/TCGA-GV-A40E-01Z-00-DX1.6313DD1A-6E65-4775-82DC-58AD4EF81D32.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cb7d999ff57196ec3c8324f37db847d575c968b1 --- /dev/null +++ b/features/TCGA-GV-A40E-01Z-00-DX1.6313DD1A-6E65-4775-82DC-58AD4EF81D32.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18693, "total_number_of_tiles": 18693, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [152339, 89820], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [19, 11], "6": [38, 22], "7": [75, 44], "8": [149, 88], "9": [298, 176], "10": [596, 351], "11": [1191, 702], "12": [2381, 1404], "13": [4761, 2807], "14": [9522, 5614], "15": [19043, 11228], "16": [38085, 22455], "17": [76170, 44910], "18": [152339, 89820]}, "level_mpp_mapping": {"0": 64985.4976, "1": 32492.7488, "2": 16246.3744, "3": 8123.1872, "4": 4061.5936, "5": 2030.7968, "6": 1015.3984, "7": 507.6992, "8": 253.8496, "9": 126.9248, "10": 63.4624, "11": 31.7312, "12": 15.8656, "13": 7.9328, "14": 3.9664, "15": 1.9832, "16": 0.9916, "17": 0.4958, "18": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "11b3ab022f7ee84206b28751f16db67906ea4b637e2d291610833ccce981f8d3"} \ No newline at end of file diff --git a/features/TCGA-GV-A40G-01Z-00-DX1.AD1A709F-A10C-4E69-B4ED-6361777361FD.svs/features.npy b/features/TCGA-GV-A40G-01Z-00-DX1.AD1A709F-A10C-4E69-B4ED-6361777361FD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d9a487d8b76a7d3c62063cfcad1565d3524c858d --- /dev/null +++ b/features/TCGA-GV-A40G-01Z-00-DX1.AD1A709F-A10C-4E69-B4ED-6361777361FD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:29d8b5bde8825ed55f5d5d6a4097d391ea1834c796d63d62f7fd888455b00fb2 +size 121107576 diff --git a/features/TCGA-GV-A40G-01Z-00-DX1.AD1A709F-A10C-4E69-B4ED-6361777361FD.svs/mask.npy b/features/TCGA-GV-A40G-01Z-00-DX1.AD1A709F-A10C-4E69-B4ED-6361777361FD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e9f01747311ca03e20a805e3494aa830e60877c8 --- /dev/null +++ b/features/TCGA-GV-A40G-01Z-00-DX1.AD1A709F-A10C-4E69-B4ED-6361777361FD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5fe705799fc4776e137c0a2dfcb43a5554e5e08484bf1466ce093a928df338aa +size 196440372 diff --git a/features/TCGA-GV-A40G-01Z-00-DX1.AD1A709F-A10C-4E69-B4ED-6361777361FD.svs/metadata.json b/features/TCGA-GV-A40G-01Z-00-DX1.AD1A709F-A10C-4E69-B4ED-6361777361FD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8a5a3c7bf2b0ccfbbe085b9b8797cba4a476f6eb --- /dev/null +++ b/features/TCGA-GV-A40G-01Z-00-DX1.AD1A709F-A10C-4E69-B4ED-6361777361FD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14762, "total_number_of_tiles": 14762, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [143716, 87458], "tile_mpp": 0.4958, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 11], "6": [36, 22], "7": [71, 43], "8": [141, 86], "9": [281, 171], "10": [562, 342], "11": [1123, 684], "12": [2246, 1367], "13": [4492, 2734], "14": [8983, 5467], "15": [17965, 10933], "16": [35929, 21865], "17": [71858, 43729], "18": [143716, 87458]}, "level_mpp_mapping": {"0": 64985.4976, "1": 32492.7488, "2": 16246.3744, "3": 8123.1872, "4": 4061.5936, "5": 2030.7968, "6": 1015.3984, "7": 507.6992, "8": 253.8496, "9": 126.9248, "10": 63.4624, "11": 31.7312, "12": 15.8656, "13": 7.9328, "14": 3.9664, "15": 1.9832, "16": 0.9916, "17": 0.4958, "18": 0.2479}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "775b979a74215acc8d942fa777f5686426a262b772e57755b626a08d87fe78da"} \ No newline at end of file diff --git a/features/TCGA-GV-A6ZA-01Z-00-DX1.6EBD225D-5EE2-4F0A-BC07-1EF5CEBFE25A.svs/features.npy b/features/TCGA-GV-A6ZA-01Z-00-DX1.6EBD225D-5EE2-4F0A-BC07-1EF5CEBFE25A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ae084c3a96d997e4a59c08d7718cf61c95faa03b --- /dev/null +++ b/features/TCGA-GV-A6ZA-01Z-00-DX1.6EBD225D-5EE2-4F0A-BC07-1EF5CEBFE25A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:94fc66e370acd485a71c64eb9e1714257aafbdc7c19c0eabc913db1f6c75ddbf +size 238260696 diff --git a/features/TCGA-GV-A6ZA-01Z-00-DX1.6EBD225D-5EE2-4F0A-BC07-1EF5CEBFE25A.svs/mask.npy b/features/TCGA-GV-A6ZA-01Z-00-DX1.6EBD225D-5EE2-4F0A-BC07-1EF5CEBFE25A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a24a4506eaeb8f8fa957c18fcba0b7893fd41f4f --- /dev/null +++ b/features/TCGA-GV-A6ZA-01Z-00-DX1.6EBD225D-5EE2-4F0A-BC07-1EF5CEBFE25A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8e9e116bc779d37ca534661e21b1f5bee5a7699e835782c0b09269f5a3b45551 +size 180840860 diff --git a/features/TCGA-GV-A6ZA-01Z-00-DX1.6EBD225D-5EE2-4F0A-BC07-1EF5CEBFE25A.svs/metadata.json b/features/TCGA-GV-A6ZA-01Z-00-DX1.6EBD225D-5EE2-4F0A-BC07-1EF5CEBFE25A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2137ae42c5ce7be298291e99c73c5203ef9e8170 --- /dev/null +++ b/features/TCGA-GV-A6ZA-01Z-00-DX1.6EBD225D-5EE2-4F0A-BC07-1EF5CEBFE25A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29042, "total_number_of_tiles": 29042, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 93699], "tile_mpp": 0.492, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [61, 46], "7": [121, 92], "8": [242, 184], "9": [483, 367], "10": [965, 733], "11": [1930, 1465], "12": [3860, 2929], "13": [7719, 5857], "14": [15438, 11713], "15": [30876, 23425], "16": [61752, 46850], "17": [123503, 93699]}, "level_mpp_mapping": {"0": 32243.712, "1": 16121.856, "2": 8060.928, "3": 4030.464, "4": 2015.232, "5": 1007.616, "6": 503.808, "7": 251.904, "8": 125.952, "9": 62.976, "10": 31.488, "11": 15.744, "12": 7.872, "13": 3.936, "14": 1.968, "15": 0.984, "16": 0.492, "17": 0.246}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "cc5f17d864698a5c278ec6cd1e7380becc61a37ceb25e856d7795d3d64c951aa"} \ No newline at end of file diff --git a/features/TCGA-H4-A2HO-01Z-00-DX1.37FB76BF-EA5F-430D-89A4-8789ECACC5DB.svs/features.npy b/features/TCGA-H4-A2HO-01Z-00-DX1.37FB76BF-EA5F-430D-89A4-8789ECACC5DB.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..89baa6400417d7bb6ec58cc6314622afd1d6d9bc --- /dev/null +++ b/features/TCGA-H4-A2HO-01Z-00-DX1.37FB76BF-EA5F-430D-89A4-8789ECACC5DB.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d0fbbd3b8170e1ec13d87b078befbb9ed3a36553417ec9b36112224758661602 +size 209595920 diff --git a/features/TCGA-H4-A2HO-01Z-00-DX1.37FB76BF-EA5F-430D-89A4-8789ECACC5DB.svs/mask.npy b/features/TCGA-H4-A2HO-01Z-00-DX1.37FB76BF-EA5F-430D-89A4-8789ECACC5DB.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0ee34547e95593ad5cba1c3da7cbc571a044f56b --- /dev/null +++ b/features/TCGA-H4-A2HO-01Z-00-DX1.37FB76BF-EA5F-430D-89A4-8789ECACC5DB.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:012a677beec84c532a53c150ef562137e22207db9fddd55ab0fec93a034b7a51 +size 139837344 diff --git a/features/TCGA-H4-A2HO-01Z-00-DX1.37FB76BF-EA5F-430D-89A4-8789ECACC5DB.svs/metadata.json b/features/TCGA-H4-A2HO-01Z-00-DX1.37FB76BF-EA5F-430D-89A4-8789ECACC5DB.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d4cb986f7e409d0e48ed8d739f7c00d344b25fb0 --- /dev/null +++ b/features/TCGA-H4-A2HO-01Z-00-DX1.37FB76BF-EA5F-430D-89A4-8789ECACC5DB.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25548, "total_number_of_tiles": 25548, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109371, 81810], "tile_mpp": 0.5066, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 20], "6": [54, 40], "7": [107, 80], "8": [214, 160], "9": [428, 320], "10": [855, 640], "11": [1709, 1279], "12": [3418, 2557], "13": [6836, 5114], "14": [13672, 10227], "15": [27343, 20453], "16": [54686, 40905], "17": [109371, 81810]}, "level_mpp_mapping": {"0": 33200.5376, "1": 16600.2688, "2": 8300.1344, "3": 4150.0672, "4": 2075.0336, "5": 1037.5168, "6": 518.7584, "7": 259.3792, "8": 129.6896, "9": 64.8448, "10": 32.4224, "11": 16.2112, "12": 8.1056, "13": 4.0528, "14": 2.0264, "15": 1.0132, "16": 0.5066, "17": 0.2533}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1a6b8525edaa3d95305dc7bf377ff88a"} \ No newline at end of file diff --git a/features/TCGA-H4-A2HQ-01Z-00-DX1.DFBDDFDD-0C65-4130-96F5-4E3838190D13.svs/features.npy b/features/TCGA-H4-A2HQ-01Z-00-DX1.DFBDDFDD-0C65-4130-96F5-4E3838190D13.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0aaf2c7d8a3172279361e95cd8d18918ff5509b0 --- /dev/null +++ b/features/TCGA-H4-A2HQ-01Z-00-DX1.DFBDDFDD-0C65-4130-96F5-4E3838190D13.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b4a2bdf61c2389098b27a2e5eb25d990a06b84f0b40ef659d9c959a59d8d4dec +size 141543740 diff --git a/features/TCGA-H4-A2HQ-01Z-00-DX1.DFBDDFDD-0C65-4130-96F5-4E3838190D13.svs/mask.npy b/features/TCGA-H4-A2HQ-01Z-00-DX1.DFBDDFDD-0C65-4130-96F5-4E3838190D13.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..82a962f6d6389144b546acd2107686c910552208 --- /dev/null +++ b/features/TCGA-H4-A2HQ-01Z-00-DX1.DFBDDFDD-0C65-4130-96F5-4E3838190D13.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c76b7023cae2580f095a0c006dd25a0f56d901d0d2160c9332001625928b75ec +size 162215264 diff --git a/features/TCGA-H4-A2HQ-01Z-00-DX1.DFBDDFDD-0C65-4130-96F5-4E3838190D13.svs/metadata.json b/features/TCGA-H4-A2HQ-01Z-00-DX1.DFBDDFDD-0C65-4130-96F5-4E3838190D13.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8a5f20409dfceca453dafd1907215d08e3362acb --- /dev/null +++ b/features/TCGA-H4-A2HQ-01Z-00-DX1.DFBDDFDD-0C65-4130-96F5-4E3838190D13.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17253, "total_number_of_tiles": 17253, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [116087, 89419], "tile_mpp": 0.5066, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [29, 22], "6": [57, 44], "7": [114, 88], "8": [227, 175], "9": [454, 350], "10": [907, 699], "11": [1814, 1398], "12": [3628, 2795], "13": [7256, 5589], "14": [14511, 11178], "15": [29022, 22355], "16": [58044, 44710], "17": [116087, 89419]}, "level_mpp_mapping": {"0": 33200.5376, "1": 16600.2688, "2": 8300.1344, "3": 4150.0672, "4": 2075.0336, "5": 1037.5168, "6": 518.7584, "7": 259.3792, "8": 129.6896, "9": 64.8448, "10": 32.4224, "11": 16.2112, "12": 8.1056, "13": 4.0528, "14": 2.0264, "15": 1.0132, "16": 0.5066, "17": 0.2533}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7727048f3d48e7eab4836e0ed93bde6b"} \ No newline at end of file diff --git a/features/TCGA-HQ-A2OE-01Z-00-DX1.6F764592-DFDC-4636-BE91-3F1F92EE5A65.svs/features.npy b/features/TCGA-HQ-A2OE-01Z-00-DX1.6F764592-DFDC-4636-BE91-3F1F92EE5A65.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e8e9f6d6dde6c0dbb46a7a6b29b782dbf04138b8 --- /dev/null +++ b/features/TCGA-HQ-A2OE-01Z-00-DX1.6F764592-DFDC-4636-BE91-3F1F92EE5A65.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2fabc0a69e39791083e57310c0b88b817b918f7237a569548ae3f27d9e4636fc +size 76108636 diff --git a/features/TCGA-HQ-A2OE-01Z-00-DX1.6F764592-DFDC-4636-BE91-3F1F92EE5A65.svs/mask.npy b/features/TCGA-HQ-A2OE-01Z-00-DX1.6F764592-DFDC-4636-BE91-3F1F92EE5A65.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4fd2c64d3e2a20e5841b6d72a23eefd1c48237ba --- /dev/null +++ b/features/TCGA-HQ-A2OE-01Z-00-DX1.6F764592-DFDC-4636-BE91-3F1F92EE5A65.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d406729c5c20e09f8f7fd6c402f8b235e450320d54e7bace9c29cf9aac587b1f +size 123595304 diff --git a/features/TCGA-HQ-A2OE-01Z-00-DX1.6F764592-DFDC-4636-BE91-3F1F92EE5A65.svs/metadata.json b/features/TCGA-HQ-A2OE-01Z-00-DX1.6F764592-DFDC-4636-BE91-3F1F92EE5A65.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cfbf49f95ab4f1d5ff1b1e2fb0a5427c661ef5dc --- /dev/null +++ b/features/TCGA-HQ-A2OE-01Z-00-DX1.6F764592-DFDC-4636-BE91-3F1F92EE5A65.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 9277, "total_number_of_tiles": 9277, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 224, "slide_size": [61965, 31911], "tile_mpp": 0.5005, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [8, 4], "4": [16, 8], "5": [31, 16], "6": [61, 32], "7": [122, 63], "8": [243, 125], "9": [485, 250], "10": [969, 499], "11": [1937, 998], "12": [3873, 1995], "13": [7746, 3989], "14": [15492, 7978], "15": [30983, 15956], "16": [61965, 31911]}, "level_mpp_mapping": {"0": 32800.768, "1": 16400.384, "2": 8200.192, "3": 4100.096, "4": 2050.048, "5": 1025.024, "6": 512.512, "7": 256.256, "8": 128.128, "9": 64.064, "10": 32.032, "11": 16.016, "12": 8.008, "13": 4.004, "14": 2.002, "15": 1.001, "16": 0.5005}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "70dc70e0388973eccc8732f163465354853fd83bacaf15309ee74927c87d7aff"} \ No newline at end of file diff --git a/features/TCGA-HQ-A2OF-01Z-00-DX1.6D50B772-71C3-40C3-94CF-969946799028.svs/features.npy b/features/TCGA-HQ-A2OF-01Z-00-DX1.6D50B772-71C3-40C3-94CF-969946799028.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7983e499530403cd96fe4c92801a4ee02f0da26b --- /dev/null +++ b/features/TCGA-HQ-A2OF-01Z-00-DX1.6D50B772-71C3-40C3-94CF-969946799028.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d598252d5dc5842cb7df8d98df25699c571742cab4637f802bc79ec3dfbf0e5f +size 71342112 diff --git a/features/TCGA-HQ-A2OF-01Z-00-DX1.6D50B772-71C3-40C3-94CF-969946799028.svs/mask.npy b/features/TCGA-HQ-A2OF-01Z-00-DX1.6D50B772-71C3-40C3-94CF-969946799028.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f709d513cc1fb25781e449d038abe42a40f907a5 --- /dev/null +++ b/features/TCGA-HQ-A2OF-01Z-00-DX1.6D50B772-71C3-40C3-94CF-969946799028.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:29157ba2b94a71226dba5f64ae5518d6013475150c1b7c2248a56cce269e6fd2 +size 112545568 diff --git a/features/TCGA-HQ-A2OF-01Z-00-DX1.6D50B772-71C3-40C3-94CF-969946799028.svs/metadata.json b/features/TCGA-HQ-A2OF-01Z-00-DX1.6D50B772-71C3-40C3-94CF-969946799028.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..add86eba76a463342cd477c1ec415a9e4f355a96 --- /dev/null +++ b/features/TCGA-HQ-A2OF-01Z-00-DX1.6D50B772-71C3-40C3-94CF-969946799028.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 8696, "total_number_of_tiles": 8696, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 224, "slide_size": [71959, 25018], "tile_mpp": 0.5005, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [9, 4], "5": [18, 7], "6": [36, 13], "7": [71, 25], "8": [141, 49], "9": [282, 98], "10": [563, 196], "11": [1125, 391], "12": [2249, 782], "13": [4498, 1564], "14": [8995, 3128], "15": [17990, 6255], "16": [35980, 12509], "17": [71959, 25018]}, "level_mpp_mapping": {"0": 65601.536, "1": 32800.768, "2": 16400.384, "3": 8200.192, "4": 4100.096, "5": 2050.048, "6": 1025.024, "7": 512.512, "8": 256.256, "9": 128.128, "10": 64.064, "11": 32.032, "12": 16.016, "13": 8.008, "14": 4.004, "15": 2.002, "16": 1.001, "17": 0.5005}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e0fb3cf78d579d2544d233b4e294fafcadb6984baf88b27ee62918fa8d1762ae"} \ No newline at end of file diff --git a/features/TCGA-HQ-A5ND-01Z-00-DX1.EDDFB95C-827E-4533-B49A-56612BC4D9DD.svs/features.npy b/features/TCGA-HQ-A5ND-01Z-00-DX1.EDDFB95C-827E-4533-B49A-56612BC4D9DD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8a58b66cc47750674df5e4bd7e7a76a9a6bf1bcb --- /dev/null +++ b/features/TCGA-HQ-A5ND-01Z-00-DX1.EDDFB95C-827E-4533-B49A-56612BC4D9DD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a676df112d3c6b9c91d6fb4775d06e3992e0d040ade3756fc5100d6748751ac0 +size 79062076 diff --git a/features/TCGA-HQ-A5ND-01Z-00-DX1.EDDFB95C-827E-4533-B49A-56612BC4D9DD.svs/mask.npy b/features/TCGA-HQ-A5ND-01Z-00-DX1.EDDFB95C-827E-4533-B49A-56612BC4D9DD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9e86cb879cf5dbacd2915330959798d1257bd2a7 --- /dev/null +++ b/features/TCGA-HQ-A5ND-01Z-00-DX1.EDDFB95C-827E-4533-B49A-56612BC4D9DD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:db7262441319fcd421756925baf1ec609060e369c5c5997d25b66a0086a59cba +size 59004392 diff --git a/features/TCGA-HQ-A5ND-01Z-00-DX1.EDDFB95C-827E-4533-B49A-56612BC4D9DD.svs/metadata.json b/features/TCGA-HQ-A5ND-01Z-00-DX1.EDDFB95C-827E-4533-B49A-56612BC4D9DD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6229c77995790fd6de3a331761d937f0ae573622 --- /dev/null +++ b/features/TCGA-HQ-A5ND-01Z-00-DX1.EDDFB95C-827E-4533-B49A-56612BC4D9DD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 9637, "total_number_of_tiles": 9637, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 224, "slide_size": [27984, 33735], "tile_mpp": 0.5005, "level_dimensions": {"0": [1, 1], "1": [1, 2], "2": [2, 3], "3": [4, 5], "4": [7, 9], "5": [14, 17], "6": [28, 33], "7": [55, 66], "8": [110, 132], "9": [219, 264], "10": [438, 528], "11": [875, 1055], "12": [1749, 2109], "13": [3498, 4217], "14": [6996, 8434], "15": [13992, 16868], "16": [27984, 33735]}, "level_mpp_mapping": {"0": 32800.768, "1": 16400.384, "2": 8200.192, "3": 4100.096, "4": 2050.048, "5": 1025.024, "6": 512.512, "7": 256.256, "8": 128.128, "9": 64.064, "10": 32.032, "11": 16.016, "12": 8.008, "13": 4.004, "14": 2.002, "15": 1.001, "16": 0.5005}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "8ad2fed28b53c49d7931a2a2d98c5a81de29735ac4f47517207acf948107783f"} \ No newline at end of file diff --git a/features/TCGA-HQ-A5NE-01Z-00-DX1.8046B606-085B-406F-A8D7-92A3E021020A.svs/features.npy b/features/TCGA-HQ-A5NE-01Z-00-DX1.8046B606-085B-406F-A8D7-92A3E021020A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..31158eca3a986a6ff07d3fae5344a627ca57221a --- /dev/null +++ b/features/TCGA-HQ-A5NE-01Z-00-DX1.8046B606-085B-406F-A8D7-92A3E021020A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8eb3bf2d95c72101d3d468792c65cb516ffa705770fa5e24ec8d20993427d8bc +size 32701272 diff --git a/features/TCGA-HQ-A5NE-01Z-00-DX1.8046B606-085B-406F-A8D7-92A3E021020A.svs/mask.npy b/features/TCGA-HQ-A5NE-01Z-00-DX1.8046B606-085B-406F-A8D7-92A3E021020A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..29757aec54037a6919f662f5f70d7ff267d501d7 --- /dev/null +++ b/features/TCGA-HQ-A5NE-01Z-00-DX1.8046B606-085B-406F-A8D7-92A3E021020A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:860284415827b586b74ff55ea6a9c5f001431cd60f7df05d173e7944809607ea +size 25469936 diff --git a/features/TCGA-HQ-A5NE-01Z-00-DX1.8046B606-085B-406F-A8D7-92A3E021020A.svs/metadata.json b/features/TCGA-HQ-A5NE-01Z-00-DX1.8046B606-085B-406F-A8D7-92A3E021020A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..34ad4c672be66d35d3021cceedf7d33fdfbfaef9 --- /dev/null +++ b/features/TCGA-HQ-A5NE-01Z-00-DX1.8046B606-085B-406F-A8D7-92A3E021020A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 3986, "total_number_of_tiles": 3986, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 224, "slide_size": [19988, 20380], "tile_mpp": 0.5005, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [10, 10], "5": [20, 20], "6": [40, 40], "7": [79, 80], "8": [157, 160], "9": [313, 319], "10": [625, 637], "11": [1250, 1274], "12": [2499, 2548], "13": [4997, 5095], "14": [9994, 10190], "15": [19988, 20380]}, "level_mpp_mapping": {"0": 16400.384, "1": 8200.192, "2": 4100.096, "3": 2050.048, "4": 1025.024, "5": 512.512, "6": 256.256, "7": 128.128, "8": 64.064, "9": 32.032, "10": 16.016, "11": 8.008, "12": 4.004, "13": 2.002, "14": 1.001, "15": 0.5005}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9418ef8a19c96be324746bb393dceb37663a024ad19ecbd5a70a51196740dd54"} \ No newline at end of file diff --git a/features/TCGA-K4-A3WS-01Z-00-DX1.6814457F-C30E-4B3D-BA37-B701FF591BFE.svs/features.npy b/features/TCGA-K4-A3WS-01Z-00-DX1.6814457F-C30E-4B3D-BA37-B701FF591BFE.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4a05fe215511ce7752d5672869754c6e1e259e19 --- /dev/null +++ b/features/TCGA-K4-A3WS-01Z-00-DX1.6814457F-C30E-4B3D-BA37-B701FF591BFE.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:59dd5018d8490fa9f71b14202023b1ec41af1e3b03d35d8a4e2d08e4a08eead5 +size 277927036 diff --git a/features/TCGA-K4-A3WS-01Z-00-DX1.6814457F-C30E-4B3D-BA37-B701FF591BFE.svs/mask.npy b/features/TCGA-K4-A3WS-01Z-00-DX1.6814457F-C30E-4B3D-BA37-B701FF591BFE.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d7b7aa74698ef7339975754077b73b94dee5e012 --- /dev/null +++ b/features/TCGA-K4-A3WS-01Z-00-DX1.6814457F-C30E-4B3D-BA37-B701FF591BFE.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:19ba33cfc543d3715d592c68d855bacc255c77363fd2e64613d8e1054aa33e68 +size 217922924 diff --git a/features/TCGA-K4-A3WS-01Z-00-DX1.6814457F-C30E-4B3D-BA37-B701FF591BFE.svs/metadata.json b/features/TCGA-K4-A3WS-01Z-00-DX1.6814457F-C30E-4B3D-BA37-B701FF591BFE.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f182977950635b7891f7b935268f0d1d7778870b --- /dev/null +++ b/features/TCGA-K4-A3WS-01Z-00-DX1.6814457F-C30E-4B3D-BA37-B701FF591BFE.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 33877, "total_number_of_tiles": 33877, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [173264, 80492], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [11, 5], "5": [22, 10], "6": [43, 20], "7": [85, 40], "8": [170, 79], "9": [339, 158], "10": [677, 315], "11": [1354, 629], "12": [2708, 1258], "13": [5415, 2516], "14": [10829, 5031], "15": [21658, 10062], "16": [43316, 20123], "17": [86632, 40246], "18": [173264, 80492]}, "level_mpp_mapping": {"0": 64382.5664, "1": 32191.2832, "2": 16095.6416, "3": 8047.8208, "4": 4023.9104, "5": 2011.9552, "6": 1005.9776, "7": 502.9888, "8": 251.4944, "9": 125.7472, "10": 62.8736, "11": 31.4368, "12": 15.7184, "13": 7.8592, "14": 3.9296, "15": 1.9648, "16": 0.9824, "17": 0.4912, "18": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ac861290ad230f2b4ab898ef38631ae9cac250ad50c2a5903a76c0ebdd927f8d"} \ No newline at end of file diff --git a/features/TCGA-K4-A3WU-01Z-00-DX1.DD4CA7B4-7950-4B7A-820A-74C763AFAE65.svs/features.npy b/features/TCGA-K4-A3WU-01Z-00-DX1.DD4CA7B4-7950-4B7A-820A-74C763AFAE65.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c00c855f5ca83311bb673532a029532c34d3bcdd --- /dev/null +++ b/features/TCGA-K4-A3WU-01Z-00-DX1.DD4CA7B4-7950-4B7A-820A-74C763AFAE65.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e774983ea992fd65e2e413ee6dcd81157fe4b5016c21387bc39b2e72617fbd78 +size 188757760 diff --git a/features/TCGA-K4-A3WU-01Z-00-DX1.DD4CA7B4-7950-4B7A-820A-74C763AFAE65.svs/mask.npy b/features/TCGA-K4-A3WU-01Z-00-DX1.DD4CA7B4-7950-4B7A-820A-74C763AFAE65.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0dd0bbdfd1a0f4d677f86f219a70741f1dff8caa --- /dev/null +++ b/features/TCGA-K4-A3WU-01Z-00-DX1.DD4CA7B4-7950-4B7A-820A-74C763AFAE65.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ea192c0c423703d5cb338e3251b48dc058a435533345b15e0baf963732179502 +size 139206328 diff --git a/features/TCGA-K4-A3WU-01Z-00-DX1.DD4CA7B4-7950-4B7A-820A-74C763AFAE65.svs/metadata.json b/features/TCGA-K4-A3WU-01Z-00-DX1.DD4CA7B4-7950-4B7A-820A-74C763AFAE65.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..98e8c79d92f0218e79cd024acb4997d48bc5ba60 --- /dev/null +++ b/features/TCGA-K4-A3WU-01Z-00-DX1.DD4CA7B4-7950-4B7A-820A-74C763AFAE65.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23008, "total_number_of_tiles": 23008, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [95200, 93584], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 12], "5": [24, 23], "6": [47, 46], "7": [93, 92], "8": [186, 183], "9": [372, 366], "10": [744, 732], "11": [1488, 1463], "12": [2975, 2925], "13": [5950, 5849], "14": [11900, 11698], "15": [23800, 23396], "16": [47600, 46792], "17": [95200, 93584]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c1a76e7ebc0709598397e3d7011313bb"} \ No newline at end of file diff --git a/features/TCGA-K4-A3WV-01Z-00-DX1.F44E3C25-920C-4730-9019-D1E993121F08.svs/features.npy b/features/TCGA-K4-A3WV-01Z-00-DX1.F44E3C25-920C-4730-9019-D1E993121F08.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0f805dcc76cedd7d1d15a4cd2324cc5ead07164a --- /dev/null +++ b/features/TCGA-K4-A3WV-01Z-00-DX1.F44E3C25-920C-4730-9019-D1E993121F08.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:efc4099e0e8aa923b9a19456b60f31ceeab11ea16b714b5931bff5e57fa00c05 +size 280888680 diff --git a/features/TCGA-K4-A3WV-01Z-00-DX1.F44E3C25-920C-4730-9019-D1E993121F08.svs/mask.npy b/features/TCGA-K4-A3WV-01Z-00-DX1.F44E3C25-920C-4730-9019-D1E993121F08.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..bc914f141b2d9eecd4a135559cc877825a24667d --- /dev/null +++ b/features/TCGA-K4-A3WV-01Z-00-DX1.F44E3C25-920C-4730-9019-D1E993121F08.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9ed768113ce9f8f85fcd3b9c0708d3608022bf04219860867a4b2d0f219e54fa +size 292069040 diff --git a/features/TCGA-K4-A3WV-01Z-00-DX1.F44E3C25-920C-4730-9019-D1E993121F08.svs/metadata.json b/features/TCGA-K4-A3WV-01Z-00-DX1.F44E3C25-920C-4730-9019-D1E993121F08.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b21ae8132d18baca92b18380917b7dce4b7d2ff4 --- /dev/null +++ b/features/TCGA-K4-A3WV-01Z-00-DX1.F44E3C25-920C-4730-9019-D1E993121F08.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 34238, "total_number_of_tiles": 34238, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [195160, 95771], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [12, 6], "5": [24, 12], "6": [48, 24], "7": [96, 47], "8": [191, 94], "9": [382, 188], "10": [763, 375], "11": [1525, 749], "12": [3050, 1497], "13": [6099, 2993], "14": [12198, 5986], "15": [24395, 11972], "16": [48790, 23943], "17": [97580, 47886], "18": [195160, 95771]}, "level_mpp_mapping": {"0": 64382.5664, "1": 32191.2832, "2": 16095.6416, "3": 8047.8208, "4": 4023.9104, "5": 2011.9552, "6": 1005.9776, "7": 502.9888, "8": 251.4944, "9": 125.7472, "10": 62.8736, "11": 31.4368, "12": 15.7184, "13": 7.8592, "14": 3.9296, "15": 1.9648, "16": 0.9824, "17": 0.4912, "18": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "31ba52fa42cb3ff8426b4f92e99bb6f6da4024d3ca051a29b88aa01774a42138"} \ No newline at end of file diff --git a/features/TCGA-K4-A4AB-01Z-00-DX1.88A9D084-1B3B-4B13-AAD7-18C6587624C0.svs/features.npy b/features/TCGA-K4-A4AB-01Z-00-DX1.88A9D084-1B3B-4B13-AAD7-18C6587624C0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..451a333aa215272ed8169b82eec1d75f0012ffdd --- /dev/null +++ b/features/TCGA-K4-A4AB-01Z-00-DX1.88A9D084-1B3B-4B13-AAD7-18C6587624C0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:81f0a6a5d81862809c95b85e546ddaf8a7a8a604bcb3608f3b4c36e935cbacdb +size 133831980 diff --git a/features/TCGA-K4-A4AB-01Z-00-DX1.88A9D084-1B3B-4B13-AAD7-18C6587624C0.svs/mask.npy b/features/TCGA-K4-A4AB-01Z-00-DX1.88A9D084-1B3B-4B13-AAD7-18C6587624C0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1edc4bd445007e3f833141893a0933f91378cc3c --- /dev/null +++ b/features/TCGA-K4-A4AB-01Z-00-DX1.88A9D084-1B3B-4B13-AAD7-18C6587624C0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d1200c7c1f9313b700a2f68ecae6aa6c81ec9032d7947bac5b7ed1fba64b2542 +size 112075028 diff --git a/features/TCGA-K4-A4AB-01Z-00-DX1.88A9D084-1B3B-4B13-AAD7-18C6587624C0.svs/metadata.json b/features/TCGA-K4-A4AB-01Z-00-DX1.88A9D084-1B3B-4B13-AAD7-18C6587624C0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e2a9d2c4b6f1d6432d3b8ec16bd958f1c368cea0 --- /dev/null +++ b/features/TCGA-K4-A4AB-01Z-00-DX1.88A9D084-1B3B-4B13-AAD7-18C6587624C0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16313, "total_number_of_tiles": 16313, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99589, 72004], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 9], "5": [25, 18], "6": [49, 36], "7": [98, 71], "8": [195, 141], "9": [390, 282], "10": [779, 563], "11": [1557, 1126], "12": [3113, 2251], "13": [6225, 4501], "14": [12449, 9001], "15": [24898, 18001], "16": [49795, 36002], "17": [99589, 72004]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "630e9636dced91b5373499575df35995"} \ No newline at end of file diff --git a/features/TCGA-K4-A4AC-01Z-00-DX1.DED1674F-953D-40DB-85AE-9CD595248EC7.svs/features.npy b/features/TCGA-K4-A4AC-01Z-00-DX1.DED1674F-953D-40DB-85AE-9CD595248EC7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6b8511e115598067799fcb79ce846b75ef7cfd2f --- /dev/null +++ b/features/TCGA-K4-A4AC-01Z-00-DX1.DED1674F-953D-40DB-85AE-9CD595248EC7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3d3d05a82ea4fe8050a290712a7d1fcde2be6918de5586e54efff6760fbf1baf +size 259156284 diff --git a/features/TCGA-K4-A4AC-01Z-00-DX1.DED1674F-953D-40DB-85AE-9CD595248EC7.svs/mask.npy b/features/TCGA-K4-A4AC-01Z-00-DX1.DED1674F-953D-40DB-85AE-9CD595248EC7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..77c627a5c5f1ee4135370c022b6fc1c0aec82565 --- /dev/null +++ b/features/TCGA-K4-A4AC-01Z-00-DX1.DED1674F-953D-40DB-85AE-9CD595248EC7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:06a21855ddbc8a5a98782cff86c9205c1cfad311ede20d03a1f65b962a264e6e +size 248296052 diff --git a/features/TCGA-K4-A4AC-01Z-00-DX1.DED1674F-953D-40DB-85AE-9CD595248EC7.svs/metadata.json b/features/TCGA-K4-A4AC-01Z-00-DX1.DED1674F-953D-40DB-85AE-9CD595248EC7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9b71ae3e5b3dd7ea5f1d0dad16d98ee68ae6fa39 --- /dev/null +++ b/features/TCGA-K4-A4AC-01Z-00-DX1.DED1674F-953D-40DB-85AE-9CD595248EC7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31589, "total_number_of_tiles": 31589, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [193256, 82217], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [12, 6], "5": [24, 11], "6": [48, 21], "7": [95, 41], "8": [189, 81], "9": [378, 161], "10": [755, 322], "11": [1510, 643], "12": [3020, 1285], "13": [6040, 2570], "14": [12079, 5139], "15": [24157, 10278], "16": [48314, 20555], "17": [96628, 41109], "18": [193256, 82217]}, "level_mpp_mapping": {"0": 64382.5664, "1": 32191.2832, "2": 16095.6416, "3": 8047.8208, "4": 4023.9104, "5": 2011.9552, "6": 1005.9776, "7": 502.9888, "8": 251.4944, "9": 125.7472, "10": 62.8736, "11": 31.4368, "12": 15.7184, "13": 7.8592, "14": 3.9296, "15": 1.9648, "16": 0.9824, "17": 0.4912, "18": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d4c0e0918cbe295020f8aadb1b6a4a5f558d520c2fc948e16ab935c9d26b9053"} \ No newline at end of file diff --git a/features/TCGA-K4-A54R-01Z-00-DX1.66AAF596-8C68-4857-9944-226F39E82CA8.svs/features.npy b/features/TCGA-K4-A54R-01Z-00-DX1.66AAF596-8C68-4857-9944-226F39E82CA8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8009c6b2d65b986757ca06b8c4810fffded508b4 --- /dev/null +++ b/features/TCGA-K4-A54R-01Z-00-DX1.66AAF596-8C68-4857-9944-226F39E82CA8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8f57a62242967231d4d100c7ce798182851527ee6ae7d7fc6307d15e7be78297 +size 102911104 diff --git a/features/TCGA-K4-A54R-01Z-00-DX1.66AAF596-8C68-4857-9944-226F39E82CA8.svs/mask.npy b/features/TCGA-K4-A54R-01Z-00-DX1.66AAF596-8C68-4857-9944-226F39E82CA8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..602072fc83e9bbd5af85af7f15445865e346d6bf --- /dev/null +++ b/features/TCGA-K4-A54R-01Z-00-DX1.66AAF596-8C68-4857-9944-226F39E82CA8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4c260671bcda9eeba0e7c2e2ffb6e8b3f4ab4613b163cf0d896314872bede099 +size 81167648 diff --git a/features/TCGA-K4-A54R-01Z-00-DX1.66AAF596-8C68-4857-9944-226F39E82CA8.svs/metadata.json b/features/TCGA-K4-A54R-01Z-00-DX1.66AAF596-8C68-4857-9944-226F39E82CA8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ab656271e04c8164ede5a732c9bca0724d85e5ff --- /dev/null +++ b/features/TCGA-K4-A54R-01Z-00-DX1.66AAF596-8C68-4857-9944-226F39E82CA8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12544, "total_number_of_tiles": 12544, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [79968, 64950], "tile_mpp": 0.4912, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [10, 8], "5": [20, 16], "6": [40, 32], "7": [79, 64], "8": [157, 127], "9": [313, 254], "10": [625, 508], "11": [1250, 1015], "12": [2499, 2030], "13": [4998, 4060], "14": [9996, 8119], "15": [19992, 16238], "16": [39984, 32475], "17": [79968, 64950]}, "level_mpp_mapping": {"0": 32191.2832, "1": 16095.6416, "2": 8047.8208, "3": 4023.9104, "4": 2011.9552, "5": 1005.9776, "6": 502.9888, "7": 251.4944, "8": 125.7472, "9": 62.8736, "10": 31.4368, "11": 15.7184, "12": 7.8592, "13": 3.9296, "14": 1.9648, "15": 0.9824, "16": 0.4912, "17": 0.2456}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "176213f2795df7776263586aa63e7a0b6090f383cbbdf0db61b7e93a2b53a9a3"} \ No newline at end of file diff --git a/features/TCGA-K4-A5RH-01Z-00-DX1.8AA2FC59-CDA4-49F5-BAB7-B14B6792FAF8.svs/features.npy b/features/TCGA-K4-A5RH-01Z-00-DX1.8AA2FC59-CDA4-49F5-BAB7-B14B6792FAF8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..efc3dc7acf8f089e7140b652c7b6e8a26518ccf7 --- /dev/null +++ b/features/TCGA-K4-A5RH-01Z-00-DX1.8AA2FC59-CDA4-49F5-BAB7-B14B6792FAF8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:15396ea007e6d7366fbfb280c3c4ad62ecd1299664f7aa10538911f83377551b +size 261149856 diff --git a/features/TCGA-K4-A5RH-01Z-00-DX1.8AA2FC59-CDA4-49F5-BAB7-B14B6792FAF8.svs/mask.npy b/features/TCGA-K4-A5RH-01Z-00-DX1.8AA2FC59-CDA4-49F5-BAB7-B14B6792FAF8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..fe9d48657a4d4ce89a4baa8979b8a47bb1ebd4fe --- /dev/null +++ b/features/TCGA-K4-A5RH-01Z-00-DX1.8AA2FC59-CDA4-49F5-BAB7-B14B6792FAF8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:662a8759ec68c04f2f32069f2a496c65bdf706d3fbde5b5eb63645e431c4488e +size 156977720 diff --git a/features/TCGA-K4-A5RH-01Z-00-DX1.8AA2FC59-CDA4-49F5-BAB7-B14B6792FAF8.svs/metadata.json b/features/TCGA-K4-A5RH-01Z-00-DX1.8AA2FC59-CDA4-49F5-BAB7-B14B6792FAF8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..55323ae6a7594eed660d539ff1ef79cd60b81668 --- /dev/null +++ b/features/TCGA-K4-A5RH-01Z-00-DX1.8AA2FC59-CDA4-49F5-BAB7-B14B6792FAF8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31832, "total_number_of_tiles": 31832, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115868, 86701], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [29, 22], "6": [57, 43], "7": [114, 85], "8": [227, 170], "9": [453, 339], "10": [906, 678], "11": [1811, 1355], "12": [3621, 2710], "13": [7242, 5419], "14": [14484, 10838], "15": [28967, 21676], "16": [57934, 43351], "17": [115868, 86701]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c8dc56d6a035bf923932cb5b585142c0"} \ No newline at end of file diff --git a/features/TCGA-K4-A5RI-01Z-00-DX1.A56C3CF4-543E-46D6-BA50-52A4C790FAE8.svs/features.npy b/features/TCGA-K4-A5RI-01Z-00-DX1.A56C3CF4-543E-46D6-BA50-52A4C790FAE8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..13b36cbc850ab33ebb14567053f5647dfb62bfb7 --- /dev/null +++ b/features/TCGA-K4-A5RI-01Z-00-DX1.A56C3CF4-543E-46D6-BA50-52A4C790FAE8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6105c49021bbccd78388fc454aa0851bf5e809ee9d71087f23645957b21007ad +size 325846600 diff --git a/features/TCGA-K4-A5RI-01Z-00-DX1.A56C3CF4-543E-46D6-BA50-52A4C790FAE8.svs/mask.npy b/features/TCGA-K4-A5RI-01Z-00-DX1.A56C3CF4-543E-46D6-BA50-52A4C790FAE8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8612ef9be4ab5efded69190adc78d9e79e66c6b8 --- /dev/null +++ b/features/TCGA-K4-A5RI-01Z-00-DX1.A56C3CF4-543E-46D6-BA50-52A4C790FAE8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85ca077047bece12fc6d9fedcae8b988f0fd0f27be311f7040a119a570e9cff5 +size 230667992 diff --git a/features/TCGA-K4-A5RI-01Z-00-DX1.A56C3CF4-543E-46D6-BA50-52A4C790FAE8.svs/metadata.json b/features/TCGA-K4-A5RI-01Z-00-DX1.A56C3CF4-543E-46D6-BA50-52A4C790FAE8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c61eb09ef568d091ef08604c4a95347dec9dc16e --- /dev/null +++ b/features/TCGA-K4-A5RI-01Z-00-DX1.A56C3CF4-543E-46D6-BA50-52A4C790FAE8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 39718, "total_number_of_tiles": 39718, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [189602, 77847], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [12, 5], "5": [24, 10], "6": [47, 20], "7": [93, 39], "8": [186, 77], "9": [371, 153], "10": [741, 305], "11": [1482, 609], "12": [2963, 1217], "13": [5926, 2433], "14": [11851, 4866], "15": [23701, 9731], "16": [47401, 19462], "17": [94801, 38924], "18": [189602, 77847]}, "level_mpp_mapping": {"0": 65142.784, "1": 32571.392, "2": 16285.696, "3": 8142.848, "4": 4071.424, "5": 2035.712, "6": 1017.856, "7": 508.928, "8": 254.464, "9": 127.232, "10": 63.616, "11": 31.808, "12": 15.904, "13": 7.952, "14": 3.976, "15": 1.988, "16": 0.994, "17": 0.497, "18": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7d2af9998b0468c4f1153c86c54a2e0481061ccb0f7b9acf9de84d9d47d52967"} \ No newline at end of file diff --git a/features/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.svs/features.npy b/features/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..276117f1befa672e5177fd0146076f7166643694 --- /dev/null +++ b/features/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2bf444c522b8b70f1c097b650159828389226753c4c63416bc0071eaaf2568dc +size 171512952 diff --git a/features/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.svs/mask.npy b/features/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..603506d6c288e52ea633f28882103c155900213d --- /dev/null +++ b/features/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b5f8ea9b97e4771bedd6be4339ced6dc31e0d99743be5a9b0a218d8c8e4d2c62 +size 154137568 diff --git a/features/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.svs/metadata.json b/features/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..84ad446c5a95d80e44818da2bc1ddb152777795c --- /dev/null +++ b/features/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20906, "total_number_of_tiles": 20906, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [127359, 77453], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [32, 19], "6": [63, 38], "7": [125, 76], "8": [249, 152], "9": [498, 303], "10": [995, 606], "11": [1990, 1211], "12": [3980, 2421], "13": [7960, 4841], "14": [15920, 9682], "15": [31840, 19364], "16": [63680, 38727], "17": [127359, 77453]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5e0fe77ca704ff7eeec7f10cce5014e3"} \ No newline at end of file diff --git a/features/TCGA-K4-A6FZ-01Z-00-DX1.E4BB7534-1719-45C7-8E0F-78558DB9AD37.svs/features.npy b/features/TCGA-K4-A6FZ-01Z-00-DX1.E4BB7534-1719-45C7-8E0F-78558DB9AD37.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5d439110ce6397a48926007b9332cd2bc43dea28 --- /dev/null +++ b/features/TCGA-K4-A6FZ-01Z-00-DX1.E4BB7534-1719-45C7-8E0F-78558DB9AD37.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6901d435333ac54b59305726368807562634cbd8644afa2447f8bbb025807842 +size 178707860 diff --git a/features/TCGA-K4-A6FZ-01Z-00-DX1.E4BB7534-1719-45C7-8E0F-78558DB9AD37.svs/mask.npy b/features/TCGA-K4-A6FZ-01Z-00-DX1.E4BB7534-1719-45C7-8E0F-78558DB9AD37.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..88edf08a9e0df1f5831bce1a2d44e3ac4a76bc43 --- /dev/null +++ b/features/TCGA-K4-A6FZ-01Z-00-DX1.E4BB7534-1719-45C7-8E0F-78558DB9AD37.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:42595ead394c2c93d2a0b331f952fa2f6e140de06a5b44763d7b0f9073002001 +size 180516464 diff --git a/features/TCGA-K4-A6FZ-01Z-00-DX1.E4BB7534-1719-45C7-8E0F-78558DB9AD37.svs/metadata.json b/features/TCGA-K4-A6FZ-01Z-00-DX1.E4BB7534-1719-45C7-8E0F-78558DB9AD37.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f846d680d9e17cf3c52dc049f57147106100618c --- /dev/null +++ b/features/TCGA-K4-A6FZ-01Z-00-DX1.E4BB7534-1719-45C7-8E0F-78558DB9AD37.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21783, "total_number_of_tiles": 21783, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [137892, 83765], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [34, 21], "7": [68, 41], "8": [135, 82], "9": [270, 164], "10": [539, 328], "11": [1078, 655], "12": [2155, 1309], "13": [4310, 2618], "14": [8619, 5236], "15": [17237, 10471], "16": [34473, 20942], "17": [68946, 41883], "18": [137892, 83765]}, "level_mpp_mapping": {"0": 65142.784, "1": 32571.392, "2": 16285.696, "3": 8142.848, "4": 4071.424, "5": 2035.712, "6": 1017.856, "7": 508.928, "8": 254.464, "9": 127.232, "10": 63.616, "11": 31.808, "12": 15.904, "13": 7.952, "14": 3.976, "15": 1.988, "16": 0.994, "17": 0.497, "18": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ef70a67804becae0c0a6270f010026662e0406dc0d502a298ef2fd999626c04f"} \ No newline at end of file diff --git a/features/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.svs/features.npy b/features/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..db263e153c39b8160c05d72bede56a674b85fe16 --- /dev/null +++ b/features/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b3bd5cab386293cda8a9bdd61925438c0d23272ce8d209f5e3e43c53f54afc42 +size 154940872 diff --git a/features/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.svs/mask.npy b/features/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..fbd7ed6cfb0d84ced976534aa6e6ab497341314b --- /dev/null +++ b/features/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:40840c938a2f937804ea6bb4d459382b3108307370cdff55f2a79cc41e79f4ae +size 114838928 diff --git a/features/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.svs/metadata.json b/features/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5079a2f12eb996281dc299f3d7256e98336c3541 --- /dev/null +++ b/features/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18886, "total_number_of_tiles": 18886, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99589, 73787], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [25, 19], "6": [49, 37], "7": [98, 73], "8": [195, 145], "9": [390, 289], "10": [779, 577], "11": [1557, 1153], "12": [3113, 2306], "13": [6225, 4612], "14": [12449, 9224], "15": [24898, 18447], "16": [49795, 36894], "17": [99589, 73787]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f8c7e2bf532d413297f222cb35823ab5"} \ No newline at end of file diff --git a/features/TCGA-K4-A83P-01Z-00-DX1.6B9251BD-650E-4F69-BE8F-AB0BE5DC90FB.svs/features.npy b/features/TCGA-K4-A83P-01Z-00-DX1.6B9251BD-650E-4F69-BE8F-AB0BE5DC90FB.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..646e211512c169c7b25b08fa1b57d251ac452f9f --- /dev/null +++ b/features/TCGA-K4-A83P-01Z-00-DX1.6B9251BD-650E-4F69-BE8F-AB0BE5DC90FB.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dd04ada18d04c955fcc25a06cda947fce2e239597c4243c2249b1e186acc915d +size 199710100 diff --git a/features/TCGA-K4-A83P-01Z-00-DX1.6B9251BD-650E-4F69-BE8F-AB0BE5DC90FB.svs/mask.npy b/features/TCGA-K4-A83P-01Z-00-DX1.6B9251BD-650E-4F69-BE8F-AB0BE5DC90FB.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..38444f506fb4bc381ddfb9286cef2a19d061bd00 --- /dev/null +++ b/features/TCGA-K4-A83P-01Z-00-DX1.6B9251BD-650E-4F69-BE8F-AB0BE5DC90FB.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:da9c16084c9f8ab5fcc0c82200ea6555420e98630dd6c8e5da076a6b5b8e149d +size 141001856 diff --git a/features/TCGA-K4-A83P-01Z-00-DX1.6B9251BD-650E-4F69-BE8F-AB0BE5DC90FB.svs/metadata.json b/features/TCGA-K4-A83P-01Z-00-DX1.6B9251BD-650E-4F69-BE8F-AB0BE5DC90FB.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a4d4da97f8cddd14b312c50843f59b8983cec8a4 --- /dev/null +++ b/features/TCGA-K4-A83P-01Z-00-DX1.6B9251BD-650E-4F69-BE8F-AB0BE5DC90FB.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24343, "total_number_of_tiles": 24343, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [127487, 70778], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 9], "5": [32, 18], "6": [63, 35], "7": [125, 70], "8": [249, 139], "9": [498, 277], "10": [996, 553], "11": [1992, 1106], "12": [3984, 2212], "13": [7968, 4424], "14": [15936, 8848], "15": [31872, 17695], "16": [63744, 35389], "17": [127487, 70778]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "df2835cc9e64282c1bbfdd1e710955da"} \ No newline at end of file diff --git a/features/TCGA-K4-AAQO-01Z-00-DX1.7533831F-414B-4BA5-9CDA-D8B24E579962.svs/features.npy b/features/TCGA-K4-AAQO-01Z-00-DX1.7533831F-414B-4BA5-9CDA-D8B24E579962.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ecd786dbdcb1597095178bf3df93459377b0f1a3 --- /dev/null +++ b/features/TCGA-K4-AAQO-01Z-00-DX1.7533831F-414B-4BA5-9CDA-D8B24E579962.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d53fc183e6b1419c8e1696653e32f545fe9e344c73692d2fdc66834fb4d54cdb +size 115323756 diff --git a/features/TCGA-K4-AAQO-01Z-00-DX1.7533831F-414B-4BA5-9CDA-D8B24E579962.svs/mask.npy b/features/TCGA-K4-AAQO-01Z-00-DX1.7533831F-414B-4BA5-9CDA-D8B24E579962.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ff59899082bbadc5b998185eca5302ab8473668f --- /dev/null +++ b/features/TCGA-K4-AAQO-01Z-00-DX1.7533831F-414B-4BA5-9CDA-D8B24E579962.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1c482c9dc78628c2e7a01d8e28f5238671e53bded545c8d7dee019ac101a93d9 +size 149255192 diff --git a/features/TCGA-K4-AAQO-01Z-00-DX1.7533831F-414B-4BA5-9CDA-D8B24E579962.svs/metadata.json b/features/TCGA-K4-AAQO-01Z-00-DX1.7533831F-414B-4BA5-9CDA-D8B24E579962.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..99da58202493fdf26a1b1c0fbf07f751d7f4df3a --- /dev/null +++ b/features/TCGA-K4-AAQO-01Z-00-DX1.7533831F-414B-4BA5-9CDA-D8B24E579962.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14057, "total_number_of_tiles": 14057, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [133463, 71563], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [17, 9], "6": [33, 18], "7": [66, 35], "8": [131, 70], "9": [261, 140], "10": [522, 280], "11": [1043, 560], "12": [2086, 1119], "13": [4171, 2237], "14": [8342, 4473], "15": [16683, 8946], "16": [33366, 17891], "17": [66732, 35782], "18": [133463, 71563]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a84c8263273a0bb15d1eafacbe4ecf9bf779f5e53e920ce521628153c01658dc"} \ No newline at end of file diff --git a/features/TCGA-LC-A66R-01Z-00-DX1.9D753031-E31A-4E0E-B937-E0D3C47CFFB9.svs/features.npy b/features/TCGA-LC-A66R-01Z-00-DX1.9D753031-E31A-4E0E-B937-E0D3C47CFFB9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..98fcfa99c8ecc3d7e09f99d0a86be888b7a6165b --- /dev/null +++ b/features/TCGA-LC-A66R-01Z-00-DX1.9D753031-E31A-4E0E-B937-E0D3C47CFFB9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b0f8b2c678c0b4754f415c64884178ee73b2215c5dd9f29242591a23f0c5c657 +size 131428208 diff --git a/features/TCGA-LC-A66R-01Z-00-DX1.9D753031-E31A-4E0E-B937-E0D3C47CFFB9.svs/mask.npy b/features/TCGA-LC-A66R-01Z-00-DX1.9D753031-E31A-4E0E-B937-E0D3C47CFFB9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5af0c2806506e4b169f00e9a6a579f303e2f308e --- /dev/null +++ b/features/TCGA-LC-A66R-01Z-00-DX1.9D753031-E31A-4E0E-B937-E0D3C47CFFB9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85ed3c1d8641437072f38b9d8814054f4e8f0d9e461b85e3a7968393fb1f0cba +size 103380944 diff --git a/features/TCGA-LC-A66R-01Z-00-DX1.9D753031-E31A-4E0E-B937-E0D3C47CFFB9.svs/metadata.json b/features/TCGA-LC-A66R-01Z-00-DX1.9D753031-E31A-4E0E-B937-E0D3C47CFFB9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f189cf2f8ea61cc30c6fe52938e28dd24b49ca4a --- /dev/null +++ b/features/TCGA-LC-A66R-01Z-00-DX1.9D753031-E31A-4E0E-B937-E0D3C47CFFB9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16020, "total_number_of_tiles": 16020, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111552, 59297], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [7, 4], "4": [14, 8], "5": [28, 15], "6": [55, 29], "7": [109, 58], "8": [218, 116], "9": [436, 232], "10": [872, 464], "11": [1743, 927], "12": [3486, 1854], "13": [6972, 3707], "14": [13944, 7413], "15": [27888, 14825], "16": [55776, 29649], "17": [111552, 59297]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a6da32bedff566bc9dd780f322a73518"} \ No newline at end of file diff --git a/features/TCGA-LT-A5Z6-01Z-00-DX1.F547947F-DDB8-4DFF-B08E-FB494F7F044B.svs/features.npy b/features/TCGA-LT-A5Z6-01Z-00-DX1.F547947F-DDB8-4DFF-B08E-FB494F7F044B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a8a9cab0e01301c6fadf99d33f0418d3df1438e2 --- /dev/null +++ b/features/TCGA-LT-A5Z6-01Z-00-DX1.F547947F-DDB8-4DFF-B08E-FB494F7F044B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bdc655f201442afe42c6f9f8cbe8b94d58d972e56706f8b5b69ec36d56a3921b +size 119146820 diff --git a/features/TCGA-LT-A5Z6-01Z-00-DX1.F547947F-DDB8-4DFF-B08E-FB494F7F044B.svs/mask.npy b/features/TCGA-LT-A5Z6-01Z-00-DX1.F547947F-DDB8-4DFF-B08E-FB494F7F044B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..17258eec742b558a81249120489f1b29317e82ee --- /dev/null +++ b/features/TCGA-LT-A5Z6-01Z-00-DX1.F547947F-DDB8-4DFF-B08E-FB494F7F044B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ff694c900b1043880c8670db36ac3d6977daf857ebb373704d6bbcf21b86035e +size 143429216 diff --git a/features/TCGA-LT-A5Z6-01Z-00-DX1.F547947F-DDB8-4DFF-B08E-FB494F7F044B.svs/metadata.json b/features/TCGA-LT-A5Z6-01Z-00-DX1.F547947F-DDB8-4DFF-B08E-FB494F7F044B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..02169170ab850fe7c51dc3a65b4f7077562a2d16 --- /dev/null +++ b/features/TCGA-LT-A5Z6-01Z-00-DX1.F547947F-DDB8-4DFF-B08E-FB494F7F044B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14523, "total_number_of_tiles": 14523, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99960, 91819], "tile_mpp": 0.4936, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [25, 23], "6": [49, 45], "7": [98, 90], "8": [196, 180], "9": [391, 359], "10": [781, 718], "11": [1562, 1435], "12": [3124, 2870], "13": [6248, 5739], "14": [12495, 11478], "15": [24990, 22955], "16": [49980, 45910], "17": [99960, 91819]}, "level_mpp_mapping": {"0": 32348.5696, "1": 16174.2848, "2": 8087.1424, "3": 4043.5712, "4": 2021.7856, "5": 1010.8928, "6": 505.4464, "7": 252.7232, "8": 126.3616, "9": 63.1808, "10": 31.5904, "11": 15.7952, "12": 7.8976, "13": 3.9488, "14": 1.9744, "15": 0.9872, "16": 0.4936, "17": 0.2468}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "6dd36477a2d3ecec5eda040618f51eba"} \ No newline at end of file diff --git a/features/TCGA-LT-A8JT-01Z-00-DX1.8D04BB53-EEA9-401B-B92E-8EB9DEEE7E4E.svs/features.npy b/features/TCGA-LT-A8JT-01Z-00-DX1.8D04BB53-EEA9-401B-B92E-8EB9DEEE7E4E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..650eb35b1a8b811c5f4d5a8773a8ddad5e435367 --- /dev/null +++ b/features/TCGA-LT-A8JT-01Z-00-DX1.8D04BB53-EEA9-401B-B92E-8EB9DEEE7E4E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:07bf018fa8596c6f7c63f2cf7f879d390bdd914f11ea5aa2ec551e5da2a64c53 +size 195649120 diff --git a/features/TCGA-LT-A8JT-01Z-00-DX1.8D04BB53-EEA9-401B-B92E-8EB9DEEE7E4E.svs/mask.npy b/features/TCGA-LT-A8JT-01Z-00-DX1.8D04BB53-EEA9-401B-B92E-8EB9DEEE7E4E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4492722d5b350e28a2aff3e67c9566865bf0361c --- /dev/null +++ b/features/TCGA-LT-A8JT-01Z-00-DX1.8D04BB53-EEA9-401B-B92E-8EB9DEEE7E4E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e9b0b2337ecc14e56344b8cabab6a3edd44111a27e0db9f272d40478846115a7 +size 207168128 diff --git a/features/TCGA-LT-A8JT-01Z-00-DX1.8D04BB53-EEA9-401B-B92E-8EB9DEEE7E4E.svs/metadata.json b/features/TCGA-LT-A8JT-01Z-00-DX1.8D04BB53-EEA9-401B-B92E-8EB9DEEE7E4E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c268e3cc8388685cb74e15b321605182e0dc651b --- /dev/null +++ b/features/TCGA-LT-A8JT-01Z-00-DX1.8D04BB53-EEA9-401B-B92E-8EB9DEEE7E4E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23848, "total_number_of_tiles": 23848, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [159360, 83190], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [20, 11], "6": [39, 21], "7": [78, 41], "8": [156, 82], "9": [312, 163], "10": [623, 325], "11": [1245, 650], "12": [2490, 1300], "13": [4980, 2600], "14": [9960, 5200], "15": [19920, 10399], "16": [39840, 20798], "17": [79680, 41595], "18": [159360, 83190]}, "level_mpp_mapping": {"0": 66191.36, "1": 33095.68, "2": 16547.84, "3": 8273.92, "4": 4136.96, "5": 2068.48, "6": 1034.24, "7": 517.12, "8": 258.56, "9": 129.28, "10": 64.64, "11": 32.32, "12": 16.16, "13": 8.08, "14": 4.04, "15": 2.02, "16": 1.01, "17": 0.505, "18": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e9dc975611341bd3193baf72bb73805e7f2ed0bf1a878cfd93dbb80b901c8646"} \ No newline at end of file diff --git a/features/TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs/features.npy b/features/TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0c3691151bb3c2d8c2d42fa942fa417010169fd2 --- /dev/null +++ b/features/TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7b56e549c1cc5ec10234d2f51fe3b34834db7355737d4ec5a956e03ce752ed8d +size 17121876 diff --git a/features/TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs/mask.npy b/features/TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..324ca8e8372ba9d313165600f93166ac700be0a5 --- /dev/null +++ b/features/TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:25154e905511a96c524c02c11ab772f82ad805b2d7ed9e4374ae49d99604c0b5 +size 24937128 diff --git a/features/TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs/metadata.json b/features/TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b0bc04b0b717ab27d4e66597a493696ebb9ed70f --- /dev/null +++ b/features/TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 2087, "total_number_of_tiles": 2087, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 15, "tile_size": 224, "absolute_tile_size": 224, "slide_size": [22000, 18133], "tile_mpp": 0.499, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 9], "5": [22, 18], "6": [43, 36], "7": [86, 71], "8": [172, 142], "9": [344, 284], "10": [688, 567], "11": [1375, 1134], "12": [2750, 2267], "13": [5500, 4534], "14": [11000, 9067], "15": [22000, 18133]}, "level_mpp_mapping": {"0": 16351.232, "1": 8175.616, "2": 4087.808, "3": 2043.904, "4": 1021.952, "5": 510.976, "6": 255.488, "7": 127.744, "8": 63.872, "9": 31.936, "10": 15.968, "11": 7.984, "12": 3.992, "13": 1.996, "14": 0.998, "15": 0.499}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "fd9fccf997f53973eaac31847bb5ee66a4042b583bcbd3db5ea551e7546c679c"} \ No newline at end of file diff --git a/features/TCGA-PQ-A6FI-01Z-00-DX1.EC3791D8-B5D2-468A-9FB7-D0217CD02DFB.svs/features.npy b/features/TCGA-PQ-A6FI-01Z-00-DX1.EC3791D8-B5D2-468A-9FB7-D0217CD02DFB.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..eb2e30f35866e99fd64f3e9cfc182029077bc2b3 --- /dev/null +++ b/features/TCGA-PQ-A6FI-01Z-00-DX1.EC3791D8-B5D2-468A-9FB7-D0217CD02DFB.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:48e6faf35dd4e6821c981e4423d7e72473ca62d5a59f25c3ed3143604445fa01 +size 118383848 diff --git a/features/TCGA-PQ-A6FI-01Z-00-DX1.EC3791D8-B5D2-468A-9FB7-D0217CD02DFB.svs/mask.npy b/features/TCGA-PQ-A6FI-01Z-00-DX1.EC3791D8-B5D2-468A-9FB7-D0217CD02DFB.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3802645382efef2d33d63fb1acbbab9fb91b7914 --- /dev/null +++ b/features/TCGA-PQ-A6FI-01Z-00-DX1.EC3791D8-B5D2-468A-9FB7-D0217CD02DFB.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:640465596f56e2d7d5989f1bcb689919b932dd427ba5c04c8613ac351eb2a14b +size 158966528 diff --git a/features/TCGA-PQ-A6FI-01Z-00-DX1.EC3791D8-B5D2-468A-9FB7-D0217CD02DFB.svs/metadata.json b/features/TCGA-PQ-A6FI-01Z-00-DX1.EC3791D8-B5D2-468A-9FB7-D0217CD02DFB.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d640d1c675dfa0d7487846b889e0fa876dbcac01 --- /dev/null +++ b/features/TCGA-PQ-A6FI-01Z-00-DX1.EC3791D8-B5D2-468A-9FB7-D0217CD02DFB.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14430, "total_number_of_tiles": 14430, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111359, 91358], "tile_mpp": 0.5026, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [28, 23], "6": [55, 45], "7": [109, 90], "8": [218, 179], "9": [435, 357], "10": [870, 714], "11": [1740, 1428], "12": [3480, 2855], "13": [6960, 5710], "14": [13920, 11420], "15": [27840, 22840], "16": [55680, 45679], "17": [111359, 91358]}, "level_mpp_mapping": {"0": 32938.3936, "1": 16469.1968, "2": 8234.5984, "3": 4117.2992, "4": 2058.6496, "5": 1029.3248, "6": 514.6624, "7": 257.3312, "8": 128.6656, "9": 64.3328, "10": 32.1664, "11": 16.0832, "12": 8.0416, "13": 4.0208, "14": 2.0104, "15": 1.0052, "16": 0.5026, "17": 0.2513}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "10bf0884c475cc720b8c43aa58a631ea04141a948d872ed978ea74abd13c378a"} \ No newline at end of file diff --git a/features/TCGA-PQ-A6FN-01Z-00-DX1.58FC60E8-7386-4E57-804D-6AD103AE0FDC.svs/features.npy b/features/TCGA-PQ-A6FN-01Z-00-DX1.58FC60E8-7386-4E57-804D-6AD103AE0FDC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4fb20a83495f460af8b029cb22a109176870e63f --- /dev/null +++ b/features/TCGA-PQ-A6FN-01Z-00-DX1.58FC60E8-7386-4E57-804D-6AD103AE0FDC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a04383ee5801bf9edbb22b4fa7b77fc8ca7c75a0305060ecb62ba41e00839d54 +size 112009340 diff --git a/features/TCGA-PQ-A6FN-01Z-00-DX1.58FC60E8-7386-4E57-804D-6AD103AE0FDC.svs/mask.npy b/features/TCGA-PQ-A6FN-01Z-00-DX1.58FC60E8-7386-4E57-804D-6AD103AE0FDC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..07ac4fca1583afebaec4850740948d446f872839 --- /dev/null +++ b/features/TCGA-PQ-A6FN-01Z-00-DX1.58FC60E8-7386-4E57-804D-6AD103AE0FDC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c95d74fc9c9ff95cd1e54a0c5dafad94adca081e6b802c3c22bf60407a7a9c7a +size 123742208 diff --git a/features/TCGA-PQ-A6FN-01Z-00-DX1.58FC60E8-7386-4E57-804D-6AD103AE0FDC.svs/metadata.json b/features/TCGA-PQ-A6FN-01Z-00-DX1.58FC60E8-7386-4E57-804D-6AD103AE0FDC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..70188a7687b29c89897766c3c65e37c620d90427 --- /dev/null +++ b/features/TCGA-PQ-A6FN-01Z-00-DX1.58FC60E8-7386-4E57-804D-6AD103AE0FDC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13653, "total_number_of_tiles": 13653, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [95039, 83315], "tile_mpp": 0.5026, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 11], "5": [24, 21], "6": [47, 41], "7": [93, 82], "8": [186, 163], "9": [372, 326], "10": [743, 651], "11": [1485, 1302], "12": [2970, 2604], "13": [5940, 5208], "14": [11880, 10415], "15": [23760, 20829], "16": [47520, 41658], "17": [95039, 83315]}, "level_mpp_mapping": {"0": 32938.3936, "1": 16469.1968, "2": 8234.5984, "3": 4117.2992, "4": 2058.6496, "5": 1029.3248, "6": 514.6624, "7": 257.3312, "8": 128.6656, "9": 64.3328, "10": 32.1664, "11": 16.0832, "12": 8.0416, "13": 4.0208, "14": 2.0104, "15": 1.0052, "16": 0.5026, "17": 0.2513}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "467cb6b12ea05e18816de6291d2601fd1865b75eb93bf737aa08838fdd734ceb"} \ No newline at end of file diff --git a/features/TCGA-S5-A6DX-01Z-00-DX1.70418D45-0396-4838-BF0C-588C7719A131.svs/features.npy b/features/TCGA-S5-A6DX-01Z-00-DX1.70418D45-0396-4838-BF0C-588C7719A131.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5ad56046125d17a9ade5823ec1c4e36cee56ed25 --- /dev/null +++ b/features/TCGA-S5-A6DX-01Z-00-DX1.70418D45-0396-4838-BF0C-588C7719A131.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85866b017ac248f47edca1aa0690e165da5bf4dd9d7dacdf0053ee942213988a +size 112542600 diff --git a/features/TCGA-S5-A6DX-01Z-00-DX1.70418D45-0396-4838-BF0C-588C7719A131.svs/mask.npy b/features/TCGA-S5-A6DX-01Z-00-DX1.70418D45-0396-4838-BF0C-588C7719A131.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a4e430bce83ed83dd2cb7c51ac2fec6a11997f1c --- /dev/null +++ b/features/TCGA-S5-A6DX-01Z-00-DX1.70418D45-0396-4838-BF0C-588C7719A131.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ffdf2553a60992c3c2e08580bb2e8a9e59369eaad0d70c1a548fbce4277b00d +size 130045556 diff --git a/features/TCGA-S5-A6DX-01Z-00-DX1.70418D45-0396-4838-BF0C-588C7719A131.svs/metadata.json b/features/TCGA-S5-A6DX-01Z-00-DX1.70418D45-0396-4838-BF0C-588C7719A131.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7bb735d96ca666f2fc4238711bb7f02f7502980b --- /dev/null +++ b/features/TCGA-S5-A6DX-01Z-00-DX1.70418D45-0396-4838-BF0C-588C7719A131.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13718, "total_number_of_tiles": 13718, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113544, 73290], "tile_mpp": 0.505, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 9], "5": [28, 18], "6": [56, 36], "7": [111, 72], "8": [222, 144], "9": [444, 287], "10": [888, 573], "11": [1775, 1146], "12": [3549, 2291], "13": [7097, 4581], "14": [14193, 9162], "15": [28386, 18323], "16": [56772, 36645], "17": [113544, 73290]}, "level_mpp_mapping": {"0": 33095.68, "1": 16547.84, "2": 8273.92, "3": 4136.96, "4": 2068.48, "5": 1034.24, "6": 517.12, "7": 258.56, "8": 129.28, "9": 64.64, "10": 32.32, "11": 16.16, "12": 8.08, "13": 4.04, "14": 2.02, "15": 1.01, "16": 0.505, "17": 0.2525}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "454aca5f87e73aaa4ecdbec53db6705d"} \ No newline at end of file diff --git a/features/TCGA-S5-AA26-01Z-00-DX1.10D28D0C-D537-485E-A371-E3C60ED66FE7.svs/features.npy b/features/TCGA-S5-AA26-01Z-00-DX1.10D28D0C-D537-485E-A371-E3C60ED66FE7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e439531a48e7626346a70d768a1a808591fa96e5 --- /dev/null +++ b/features/TCGA-S5-AA26-01Z-00-DX1.10D28D0C-D537-485E-A371-E3C60ED66FE7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8e040b6a9f6b4a97c0d91b3e0e927afc51b691c970d116421863739c6622b339 +size 87192240 diff --git a/features/TCGA-S5-AA26-01Z-00-DX1.10D28D0C-D537-485E-A371-E3C60ED66FE7.svs/mask.npy b/features/TCGA-S5-AA26-01Z-00-DX1.10D28D0C-D537-485E-A371-E3C60ED66FE7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..afc05c675159894e7a96ca7e048b78eb913f02f4 --- /dev/null +++ b/features/TCGA-S5-AA26-01Z-00-DX1.10D28D0C-D537-485E-A371-E3C60ED66FE7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:626d528e21b20de3c1f5c8917bdb8b226596ef4842a6066b4d9b94afff3f4034 +size 98524400 diff --git a/features/TCGA-S5-AA26-01Z-00-DX1.10D28D0C-D537-485E-A371-E3C60ED66FE7.svs/metadata.json b/features/TCGA-S5-AA26-01Z-00-DX1.10D28D0C-D537-485E-A371-E3C60ED66FE7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..117364b53b5ca7264af98a3a46aab2fb989a7801 --- /dev/null +++ b/features/TCGA-S5-AA26-01Z-00-DX1.10D28D0C-D537-485E-A371-E3C60ED66FE7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10628, "total_number_of_tiles": 10628, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93623, 67329], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 9], "5": [23, 17], "6": [46, 33], "7": [92, 66], "8": [183, 132], "9": [366, 264], "10": [732, 527], "11": [1463, 1053], "12": [2926, 2105], "13": [5852, 4209], "14": [11703, 8417], "15": [23406, 16833], "16": [46812, 33665], "17": [93623, 67329]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c5ba0c093e8d264283d130d626244c496701628dbebb88ea3b7ec307963e0b93"} \ No newline at end of file diff --git a/features/TCGA-SY-A9G0-01Z-00-DX1.6F019857-03C8-4B2B-8892-32CBF3EB303F.svs/features.npy b/features/TCGA-SY-A9G0-01Z-00-DX1.6F019857-03C8-4B2B-8892-32CBF3EB303F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7dd50fe50590cbda2fc8e58368d91bac26c1fea9 --- /dev/null +++ b/features/TCGA-SY-A9G0-01Z-00-DX1.6F019857-03C8-4B2B-8892-32CBF3EB303F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9b650a3fdcc0b06dfc082c124543aa8589d5953dab8076c8fa831162a2ee6289 +size 30084196 diff --git a/features/TCGA-SY-A9G0-01Z-00-DX1.6F019857-03C8-4B2B-8892-32CBF3EB303F.svs/mask.npy b/features/TCGA-SY-A9G0-01Z-00-DX1.6F019857-03C8-4B2B-8892-32CBF3EB303F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8e48d44b2cdcbc366acf3a6b55d6933cfc9534b9 --- /dev/null +++ b/features/TCGA-SY-A9G0-01Z-00-DX1.6F019857-03C8-4B2B-8892-32CBF3EB303F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:23017d9a18c5fca224979158fdbec2def8bcb0f7fe851ef60c9c9ee3ece0e8ab +size 74049740 diff --git a/features/TCGA-SY-A9G0-01Z-00-DX1.6F019857-03C8-4B2B-8892-32CBF3EB303F.svs/metadata.json b/features/TCGA-SY-A9G0-01Z-00-DX1.6F019857-03C8-4B2B-8892-32CBF3EB303F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..127c1d16f769000b5766ce785d8e77542c855fd4 --- /dev/null +++ b/features/TCGA-SY-A9G0-01Z-00-DX1.6F019857-03C8-4B2B-8892-32CBF3EB303F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 3667, "total_number_of_tiles": 3667, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [75695, 62595], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 4], "4": [10, 8], "5": [19, 16], "6": [37, 31], "7": [74, 62], "8": [148, 123], "9": [296, 245], "10": [592, 490], "11": [1183, 979], "12": [2366, 1957], "13": [4731, 3913], "14": [9462, 7825], "15": [18924, 15649], "16": [37848, 31298], "17": [75695, 62595]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "809bdef546e70724679e5902d325f88cec04ec4e7b16a84e450da6a07fd89eb2"} \ No newline at end of file diff --git a/features/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.svs/features.npy b/features/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4b8ee34c5ab307cb168ce8f56681436a17244d24 --- /dev/null +++ b/features/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:00e3ead41dff472837172e9a147decb38f9b564a3b04e91678850f27ad6539e0 +size 74205308 diff --git a/features/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.svs/mask.npy b/features/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a888660724b5e610fd1bfb91662c90f7c7514e16 --- /dev/null +++ b/features/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:328ea603fb13531d89413201e1e155c136d1589136e0b7d4865ca3de3f0af77c +size 151059308 diff --git a/features/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.svs/metadata.json b/features/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a203e4370566598e97f3967c3253866dcf1909e8 --- /dev/null +++ b/features/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 9045, "total_number_of_tiles": 9045, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [145415, 66475], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [18, 9], "6": [36, 17], "7": [72, 33], "8": [143, 65], "9": [285, 130], "10": [569, 260], "11": [1137, 520], "12": [2273, 1039], "13": [4545, 2078], "14": [9089, 4155], "15": [18177, 8310], "16": [36354, 16619], "17": [72708, 33238], "18": [145415, 66475]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5fff43486ea89514eab406ba4c4e48e7912dcbd54e44d7f531f70cb274e429b6"} \ No newline at end of file diff --git a/features/TCGA-UY-A78K-01Z-00-DX1.329D9BFF-A204-4A7D-8767-B39F34179708.svs/features.npy b/features/TCGA-UY-A78K-01Z-00-DX1.329D9BFF-A204-4A7D-8767-B39F34179708.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..16d53536290d528d918d2c9d4fbf8c77b97bdf4e --- /dev/null +++ b/features/TCGA-UY-A78K-01Z-00-DX1.329D9BFF-A204-4A7D-8767-B39F34179708.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d49ce465cd00b9351e2717c1ece57884d5346b15c1112f606fe91f0cb8bc3e6c +size 87823948 diff --git a/features/TCGA-UY-A78K-01Z-00-DX1.329D9BFF-A204-4A7D-8767-B39F34179708.svs/mask.npy b/features/TCGA-UY-A78K-01Z-00-DX1.329D9BFF-A204-4A7D-8767-B39F34179708.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..15058f94cde5928fd188da2abb8c4b21c9f53e9f --- /dev/null +++ b/features/TCGA-UY-A78K-01Z-00-DX1.329D9BFF-A204-4A7D-8767-B39F34179708.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4217c0414c6a6f8c1a00c7952f9b9666f5dfc6cb81c6d0752023e7ac8422cde7 +size 76134008 diff --git a/features/TCGA-UY-A78K-01Z-00-DX1.329D9BFF-A204-4A7D-8767-B39F34179708.svs/metadata.json b/features/TCGA-UY-A78K-01Z-00-DX1.329D9BFF-A204-4A7D-8767-B39F34179708.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8192e93d508cd0a08bf97ecb7b3be2c24befd092 --- /dev/null +++ b/features/TCGA-UY-A78K-01Z-00-DX1.329D9BFF-A204-4A7D-8767-B39F34179708.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10705, "total_number_of_tiles": 10705, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [85655, 56874], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 4], "4": [11, 7], "5": [21, 14], "6": [42, 28], "7": [84, 56], "8": [168, 112], "9": [335, 223], "10": [670, 445], "11": [1339, 889], "12": [2677, 1778], "13": [5354, 3555], "14": [10707, 7110], "15": [21414, 14219], "16": [42828, 28437], "17": [85655, 56874]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "714d6726da9b6e33c7469413ca47b76772dac6663cf34f539f56b54d287fabd8"} \ No newline at end of file diff --git a/features/TCGA-UY-A78L-01Z-00-DX1.8955EB83-E4AE-452E-8B68-83C4B8BED6D5.svs/features.npy b/features/TCGA-UY-A78L-01Z-00-DX1.8955EB83-E4AE-452E-8B68-83C4B8BED6D5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ac1f2708acd9578783bdf3fd139e214602234ccb --- /dev/null +++ b/features/TCGA-UY-A78L-01Z-00-DX1.8955EB83-E4AE-452E-8B68-83C4B8BED6D5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d6d427ee80525b0c2e5e100f55f38d15cad4f5ad915df62e1c1f8ace0dfa0c8d +size 95010652 diff --git a/features/TCGA-UY-A78L-01Z-00-DX1.8955EB83-E4AE-452E-8B68-83C4B8BED6D5.svs/mask.npy b/features/TCGA-UY-A78L-01Z-00-DX1.8955EB83-E4AE-452E-8B68-83C4B8BED6D5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..0deb20d40773ca54f63e7988b438e93562a955fe --- /dev/null +++ b/features/TCGA-UY-A78L-01Z-00-DX1.8955EB83-E4AE-452E-8B68-83C4B8BED6D5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:61c237632c06bd6fd986c1d119902d706a485b7d2e88145ad704cfaa23d91c03 +size 153032000 diff --git a/features/TCGA-UY-A78L-01Z-00-DX1.8955EB83-E4AE-452E-8B68-83C4B8BED6D5.svs/metadata.json b/features/TCGA-UY-A78L-01Z-00-DX1.8955EB83-E4AE-452E-8B68-83C4B8BED6D5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e6b6dfc41e2c3f33d2aae9fc720f959f0a224450 --- /dev/null +++ b/features/TCGA-UY-A78L-01Z-00-DX1.8955EB83-E4AE-452E-8B68-83C4B8BED6D5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 11581, "total_number_of_tiles": 11581, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [117527, 83315], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [29, 21], "6": [58, 41], "7": [115, 82], "8": [230, 163], "9": [460, 326], "10": [919, 651], "11": [1837, 1302], "12": [3673, 2604], "13": [7346, 5208], "14": [14691, 10415], "15": [29382, 20829], "16": [58764, 41658], "17": [117527, 83315]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2a5e2c75be1c455c624cbcd3d64bd098"} \ No newline at end of file diff --git a/features/TCGA-UY-A78M-01Z-00-DX1.9C08E77F-E63B-480E-A4D5-1576EF802152.svs/features.npy b/features/TCGA-UY-A78M-01Z-00-DX1.9C08E77F-E63B-480E-A4D5-1576EF802152.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e5b6bdfb08bbc7e0b3d2c7f6dd48a55257bafc4b --- /dev/null +++ b/features/TCGA-UY-A78M-01Z-00-DX1.9C08E77F-E63B-480E-A4D5-1576EF802152.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:afa1571fbf12a652e2d2efbbac752d89e2f434c7f709694ff7117abae57fd849 +size 154473244 diff --git a/features/TCGA-UY-A78M-01Z-00-DX1.9C08E77F-E63B-480E-A4D5-1576EF802152.svs/mask.npy b/features/TCGA-UY-A78M-01Z-00-DX1.9C08E77F-E63B-480E-A4D5-1576EF802152.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..fbc05d809851752ebaa15c294684637736001395 --- /dev/null +++ b/features/TCGA-UY-A78M-01Z-00-DX1.9C08E77F-E63B-480E-A4D5-1576EF802152.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:022be848a8fcfecb654237b93b85e9dc01a532967697337fa12ef5d8861bf6a6 +size 109397928 diff --git a/features/TCGA-UY-A78M-01Z-00-DX1.9C08E77F-E63B-480E-A4D5-1576EF802152.svs/metadata.json b/features/TCGA-UY-A78M-01Z-00-DX1.9C08E77F-E63B-480E-A4D5-1576EF802152.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..80287770abf8409ad62845b92b0cd1d461a5d034 --- /dev/null +++ b/features/TCGA-UY-A78M-01Z-00-DX1.9C08E77F-E63B-480E-A4D5-1576EF802152.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18829, "total_number_of_tiles": 18829, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101591, 68905], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 9], "5": [25, 17], "6": [50, 34], "7": [100, 68], "8": [199, 135], "9": [397, 270], "10": [794, 539], "11": [1588, 1077], "12": [3175, 2154], "13": [6350, 4307], "14": [12699, 8614], "15": [25398, 17227], "16": [50796, 34453], "17": [101591, 68905]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d46047df17d809d999d65e28cb2243a6"} \ No newline at end of file diff --git a/features/TCGA-UY-A78N-01Z-00-DX1.31873403-A629-4ED9-B2AF-14817689BB3B.svs/features.npy b/features/TCGA-UY-A78N-01Z-00-DX1.31873403-A629-4ED9-B2AF-14817689BB3B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..21d99c9f3195ff56e17647950c748254b9bc9376 --- /dev/null +++ b/features/TCGA-UY-A78N-01Z-00-DX1.31873403-A629-4ED9-B2AF-14817689BB3B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4487ecdb6d782c8e1d426a6b4dedf4290a61cb1f16b42c82458acabae9d20958 +size 139763472 diff --git a/features/TCGA-UY-A78N-01Z-00-DX1.31873403-A629-4ED9-B2AF-14817689BB3B.svs/mask.npy b/features/TCGA-UY-A78N-01Z-00-DX1.31873403-A629-4ED9-B2AF-14817689BB3B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8c1981ab0d5d38c3b64076b7fecbabb91c8c2b30 --- /dev/null +++ b/features/TCGA-UY-A78N-01Z-00-DX1.31873403-A629-4ED9-B2AF-14817689BB3B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c094dba05e0a15be09ab648db199dcca06dbd791ad84b4ae7793ec9249446745 +size 177050736 diff --git a/features/TCGA-UY-A78N-01Z-00-DX1.31873403-A629-4ED9-B2AF-14817689BB3B.svs/metadata.json b/features/TCGA-UY-A78N-01Z-00-DX1.31873403-A629-4ED9-B2AF-14817689BB3B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ac965e311b43c89ebdcd8f73a718d47716a94b25 --- /dev/null +++ b/features/TCGA-UY-A78N-01Z-00-DX1.31873403-A629-4ED9-B2AF-14817689BB3B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17036, "total_number_of_tiles": 17036, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [133463, 84882], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [33, 21], "7": [66, 42], "8": [131, 83], "9": [261, 166], "10": [522, 332], "11": [1043, 664], "12": [2086, 1327], "13": [4171, 2653], "14": [8342, 5306], "15": [16683, 10611], "16": [33366, 21221], "17": [66732, 42441], "18": [133463, 84882]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "111f7e5be73e321e586a88f15aa13389064f715383bc91dc8462e283feb43ed7"} \ No newline at end of file diff --git a/features/TCGA-UY-A78O-01Z-00-DX1.6DDC084F-A086-4B5B-90B6-9C45E842A5FA.svs/features.npy b/features/TCGA-UY-A78O-01Z-00-DX1.6DDC084F-A086-4B5B-90B6-9C45E842A5FA.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8d43c12227710f7fc32d926b9c0b6938dc9b9f2b --- /dev/null +++ b/features/TCGA-UY-A78O-01Z-00-DX1.6DDC084F-A086-4B5B-90B6-9C45E842A5FA.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0b341b342daa96c14f1cc358b241869839537a1c4291153c1f8f557aadcb27e7 +size 203951568 diff --git a/features/TCGA-UY-A78O-01Z-00-DX1.6DDC084F-A086-4B5B-90B6-9C45E842A5FA.svs/mask.npy b/features/TCGA-UY-A78O-01Z-00-DX1.6DDC084F-A086-4B5B-90B6-9C45E842A5FA.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a4fe91b3ee06f47a8eac667b0a66e084e3a96969 --- /dev/null +++ b/features/TCGA-UY-A78O-01Z-00-DX1.6DDC084F-A086-4B5B-90B6-9C45E842A5FA.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:25395fb8bd18e596c897eff9bd52d2969ed4ecc55c1b4e1c748aeef1d26331c3 +size 141631688 diff --git a/features/TCGA-UY-A78O-01Z-00-DX1.6DDC084F-A086-4B5B-90B6-9C45E842A5FA.svs/metadata.json b/features/TCGA-UY-A78O-01Z-00-DX1.6DDC084F-A086-4B5B-90B6-9C45E842A5FA.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bd84b5b9d25e9e2159e334c1dccab35498defc28 --- /dev/null +++ b/features/TCGA-UY-A78O-01Z-00-DX1.6DDC084F-A086-4B5B-90B6-9C45E842A5FA.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24860, "total_number_of_tiles": 24860, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 74589], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [30, 19], "6": [60, 37], "7": [119, 73], "8": [238, 146], "9": [475, 292], "10": [950, 583], "11": [1899, 1166], "12": [3798, 2331], "13": [7595, 4662], "14": [15189, 9324], "15": [30378, 18648], "16": [60756, 37295], "17": [121511, 74589]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7c1ca9afc605e4264a19b57625275791"} \ No newline at end of file diff --git a/features/TCGA-UY-A78P-01Z-00-DX1.B6783816-0322-4453-BC80-20ED79A40588.svs/features.npy b/features/TCGA-UY-A78P-01Z-00-DX1.B6783816-0322-4453-BC80-20ED79A40588.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..5e85da368349ae601fdd3d7884693a0da7c2ba94 --- /dev/null +++ b/features/TCGA-UY-A78P-01Z-00-DX1.B6783816-0322-4453-BC80-20ED79A40588.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:90a1877019404f07bfcd8bed0657b9ad9401dbfec1a151cb63c3f2b10d14c0b7 +size 250279556 diff --git a/features/TCGA-UY-A78P-01Z-00-DX1.B6783816-0322-4453-BC80-20ED79A40588.svs/mask.npy b/features/TCGA-UY-A78P-01Z-00-DX1.B6783816-0322-4453-BC80-20ED79A40588.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3625666c49bac378e9b345a9a04108e8bba372b2 --- /dev/null +++ b/features/TCGA-UY-A78P-01Z-00-DX1.B6783816-0322-4453-BC80-20ED79A40588.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ce18d4f2d981a7c8fefbe937b97515b485484762224924ff49870322101d1176 +size 185556432 diff --git a/features/TCGA-UY-A78P-01Z-00-DX1.B6783816-0322-4453-BC80-20ED79A40588.svs/metadata.json b/features/TCGA-UY-A78P-01Z-00-DX1.B6783816-0322-4453-BC80-20ED79A40588.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6c87536982bb6ff2d45e7604cc04296e82f925ef --- /dev/null +++ b/features/TCGA-UY-A78P-01Z-00-DX1.B6783816-0322-4453-BC80-20ED79A40588.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 30507, "total_number_of_tiles": 30507, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129479, 91703], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [32, 23], "6": [64, 45], "7": [127, 90], "8": [253, 180], "9": [506, 359], "10": [1012, 717], "11": [2024, 1433], "12": [4047, 2866], "13": [8093, 5732], "14": [16185, 11463], "15": [32370, 22926], "16": [64740, 45852], "17": [129479, 91703]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "fbc3b817db85cbcc0fec3f7aaa045e3a"} \ No newline at end of file diff --git a/features/TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs/features.npy b/features/TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..52c6ed34d7f91f3a479f9a6c9759c8ba8152f3aa --- /dev/null +++ b/features/TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e8a299402a17314eaef13112c1e1e5f5057b8c7b4ac59b746c0016baba9c0037 +size 223075092 diff --git a/features/TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs/mask.npy b/features/TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e697e2b27a990979824eeb5420ada59ccf70e724 --- /dev/null +++ b/features/TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:07bf70c0d69877d94d07b700bdad27741d4b18040f42332ee0d4914c8a973b5d +size 199085588 diff --git a/features/TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs/metadata.json b/features/TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..89e6155ef361e1aa6966b78ae3687f2154f33935 --- /dev/null +++ b/features/TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 27191, "total_number_of_tiles": 27191, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [139439, 91375], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [35, 23], "7": [69, 45], "8": [137, 90], "9": [273, 179], "10": [545, 357], "11": [1090, 714], "12": [2179, 1428], "13": [4358, 2856], "14": [8715, 5711], "15": [17430, 11422], "16": [34860, 22844], "17": [69720, 45688], "18": [139439, 91375]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "595459ec455056fdcb530a6917e5efbf7722520dee61072e3e2aeee00d70be32"} \ No newline at end of file diff --git a/features/TCGA-UY-A8OC-01Z-00-DX1.EE2DF9C6-3CA9-411D-85D4-D1831F14AAFD.svs/features.npy b/features/TCGA-UY-A8OC-01Z-00-DX1.EE2DF9C6-3CA9-411D-85D4-D1831F14AAFD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e6a66783952a7ad36826cfe87fcffb93a62c4f71 --- /dev/null +++ b/features/TCGA-UY-A8OC-01Z-00-DX1.EE2DF9C6-3CA9-411D-85D4-D1831F14AAFD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:547899ce2dfc629d20be5e7241af8594b33ae06e1b641f8dd6659a6562f74eef +size 153349296 diff --git a/features/TCGA-UY-A8OC-01Z-00-DX1.EE2DF9C6-3CA9-411D-85D4-D1831F14AAFD.svs/mask.npy b/features/TCGA-UY-A8OC-01Z-00-DX1.EE2DF9C6-3CA9-411D-85D4-D1831F14AAFD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9fc0439fa1b8a340bec187ed31d20b2b7e7e3830 --- /dev/null +++ b/features/TCGA-UY-A8OC-01Z-00-DX1.EE2DF9C6-3CA9-411D-85D4-D1831F14AAFD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d0be1c51fa4e999fa587022c412255a79c841eb63a47c9bacba7e55d9ae5650b +size 139827572 diff --git a/features/TCGA-UY-A8OC-01Z-00-DX1.EE2DF9C6-3CA9-411D-85D4-D1831F14AAFD.svs/metadata.json b/features/TCGA-UY-A8OC-01Z-00-DX1.EE2DF9C6-3CA9-411D-85D4-D1831F14AAFD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a16be6c805d6c3d63c83be0d5a64969d5911b68f --- /dev/null +++ b/features/TCGA-UY-A8OC-01Z-00-DX1.EE2DF9C6-3CA9-411D-85D4-D1831F14AAFD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18692, "total_number_of_tiles": 18692, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115535, 77451], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [29, 19], "6": [57, 38], "7": [113, 76], "8": [226, 152], "9": [452, 303], "10": [903, 606], "11": [1806, 1211], "12": [3611, 2421], "13": [7221, 4841], "14": [14442, 9682], "15": [28884, 19363], "16": [57768, 38726], "17": [115535, 77451]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ab6cf91c1ea037136cfc0ce2980374df"} \ No newline at end of file diff --git a/features/TCGA-UY-A8OD-01Z-00-DX1.3985C497-D586-4AB9-A635-63A7946C5A2E.svs/features.npy b/features/TCGA-UY-A8OD-01Z-00-DX1.3985C497-D586-4AB9-A635-63A7946C5A2E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8a7c10f6461b9d7bdfa3a1fe0ee19f1646153736 --- /dev/null +++ b/features/TCGA-UY-A8OD-01Z-00-DX1.3985C497-D586-4AB9-A635-63A7946C5A2E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0e35ec6bb2ca4998122fd71ccb1bf2286bdd656082f5c0440ae8b8aaaeab4ec9 +size 113141492 diff --git a/features/TCGA-UY-A8OD-01Z-00-DX1.3985C497-D586-4AB9-A635-63A7946C5A2E.svs/mask.npy b/features/TCGA-UY-A8OD-01Z-00-DX1.3985C497-D586-4AB9-A635-63A7946C5A2E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..df8a1e05b2abc15801a91759ddbf59793dd09cc8 --- /dev/null +++ b/features/TCGA-UY-A8OD-01Z-00-DX1.3985C497-D586-4AB9-A635-63A7946C5A2E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:77ada0e4da36b06ba9f1ef000ad5bd5be9ffd0df5005b9147b3d0156d1738586 +size 160635008 diff --git a/features/TCGA-UY-A8OD-01Z-00-DX1.3985C497-D586-4AB9-A635-63A7946C5A2E.svs/metadata.json b/features/TCGA-UY-A8OD-01Z-00-DX1.3985C497-D586-4AB9-A635-63A7946C5A2E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f2679e4de89bd985b8e72fd2ceefe8a72587cb1a --- /dev/null +++ b/features/TCGA-UY-A8OD-01Z-00-DX1.3985C497-D586-4AB9-A635-63A7946C5A2E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13791, "total_number_of_tiles": 13791, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119519, 86006], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [30, 21], "6": [59, 42], "7": [117, 84], "8": [234, 168], "9": [467, 336], "10": [934, 672], "11": [1868, 1344], "12": [3735, 2688], "13": [7470, 5376], "14": [14940, 10751], "15": [29880, 21502], "16": [59760, 43003], "17": [119519, 86006]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a7f2bcd1a68c62ddf9f01c99bb7e16a2"} \ No newline at end of file diff --git a/features/TCGA-UY-A9PA-01Z-00-DX1.A83A79FB-810C-42A4-8EC7-A3328D79542D.svs/features.npy b/features/TCGA-UY-A9PA-01Z-00-DX1.A83A79FB-810C-42A4-8EC7-A3328D79542D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..371e1a35371d3920a1bfcf657de3df345affc380 --- /dev/null +++ b/features/TCGA-UY-A9PA-01Z-00-DX1.A83A79FB-810C-42A4-8EC7-A3328D79542D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0e1e7666eb683f15848cedd7be8638baf3f7ec6c7ac361f278725f117fb52a84 +size 241632540 diff --git a/features/TCGA-UY-A9PA-01Z-00-DX1.A83A79FB-810C-42A4-8EC7-A3328D79542D.svs/mask.npy b/features/TCGA-UY-A9PA-01Z-00-DX1.A83A79FB-810C-42A4-8EC7-A3328D79542D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5cfbc43a2289a83009c5b6c3462b0487994f601f --- /dev/null +++ b/features/TCGA-UY-A9PA-01Z-00-DX1.A83A79FB-810C-42A4-8EC7-A3328D79542D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bc47bd451bfa60b4621238528bd685cb8cbc5593f8951c43731fb3e4d12ef363 +size 153258368 diff --git a/features/TCGA-UY-A9PA-01Z-00-DX1.A83A79FB-810C-42A4-8EC7-A3328D79542D.svs/metadata.json b/features/TCGA-UY-A9PA-01Z-00-DX1.A83A79FB-810C-42A4-8EC7-A3328D79542D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1c7274e99bd5aff51b6d277ade36a243fbeecb46 --- /dev/null +++ b/features/TCGA-UY-A9PA-01Z-00-DX1.A83A79FB-810C-42A4-8EC7-A3328D79542D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29453, "total_number_of_tiles": 29453, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109559, 89506], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 22], "6": [54, 44], "7": [107, 88], "8": [214, 175], "9": [428, 350], "10": [856, 700], "11": [1712, 1399], "12": [3424, 2798], "13": [6848, 5595], "14": [13695, 11189], "15": [27390, 22377], "16": [54780, 44753], "17": [109559, 89506]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "88b91cb60b3857e42e90a1c2d6a81d40"} \ No newline at end of file diff --git a/features/TCGA-UY-A9PB-01Z-00-DX1.4ACBFEEA-703A-47AF-A67D-359B9F027DD0.svs/features.npy b/features/TCGA-UY-A9PB-01Z-00-DX1.4ACBFEEA-703A-47AF-A67D-359B9F027DD0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..7f32681908d3f589fd9916437c8c4f93fe667dfd --- /dev/null +++ b/features/TCGA-UY-A9PB-01Z-00-DX1.4ACBFEEA-703A-47AF-A67D-359B9F027DD0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d8115e846008d7a4702fb9984ea3cace6b95be04b9579979632ac92da8b13ae2 +size 132059916 diff --git a/features/TCGA-UY-A9PB-01Z-00-DX1.4ACBFEEA-703A-47AF-A67D-359B9F027DD0.svs/mask.npy b/features/TCGA-UY-A9PB-01Z-00-DX1.4ACBFEEA-703A-47AF-A67D-359B9F027DD0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..730c0e53b12ac4e669425c4208a1f5a32ceb512e --- /dev/null +++ b/features/TCGA-UY-A9PB-01Z-00-DX1.4ACBFEEA-703A-47AF-A67D-359B9F027DD0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d124693ea8d2346930b79698951217f44ff37dac178b049924b3b4d8b475a717 +size 191738096 diff --git a/features/TCGA-UY-A9PB-01Z-00-DX1.4ACBFEEA-703A-47AF-A67D-359B9F027DD0.svs/metadata.json b/features/TCGA-UY-A9PB-01Z-00-DX1.4ACBFEEA-703A-47AF-A67D-359B9F027DD0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1e06366ae7c008fb87ad42793773f7e8a9c7384d --- /dev/null +++ b/features/TCGA-UY-A9PB-01Z-00-DX1.4ACBFEEA-703A-47AF-A67D-359B9F027DD0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16097, "total_number_of_tiles": 16097, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135455, 90587], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [34, 23], "7": [67, 45], "8": [133, 89], "9": [265, 177], "10": [530, 354], "11": [1059, 708], "12": [2117, 1416], "13": [4233, 2831], "14": [8466, 5662], "15": [16932, 11324], "16": [33864, 22647], "17": [67728, 45294], "18": [135455, 90587]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "6632648e2b45e2b9dcbcaa3173e576834debe8a787618743ec6cee57af4f77f2"} \ No newline at end of file diff --git a/features/TCGA-UY-A9PD-01Z-00-DX1.55AF21E3-74DF-4D18-ADA4-A2A12665DF0A.svs/features.npy b/features/TCGA-UY-A9PD-01Z-00-DX1.55AF21E3-74DF-4D18-ADA4-A2A12665DF0A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a6c35669e4d2c428a00d67e18e4bf7a8101f9578 --- /dev/null +++ b/features/TCGA-UY-A9PD-01Z-00-DX1.55AF21E3-74DF-4D18-ADA4-A2A12665DF0A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e00565adf21243bd2267fc3a385259747a57aceb65e655634f7ef2ce91457809 +size 169781908 diff --git a/features/TCGA-UY-A9PD-01Z-00-DX1.55AF21E3-74DF-4D18-ADA4-A2A12665DF0A.svs/mask.npy b/features/TCGA-UY-A9PD-01Z-00-DX1.55AF21E3-74DF-4D18-ADA4-A2A12665DF0A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..597fbcb56680853fcd96137978d6f5bc8247a3f5 --- /dev/null +++ b/features/TCGA-UY-A9PD-01Z-00-DX1.55AF21E3-74DF-4D18-ADA4-A2A12665DF0A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a1548948bb800d65c79b154d7f82feca8eee9e0e851b91de63f2efde1281deea +size 137998416 diff --git a/features/TCGA-UY-A9PD-01Z-00-DX1.55AF21E3-74DF-4D18-ADA4-A2A12665DF0A.svs/metadata.json b/features/TCGA-UY-A9PD-01Z-00-DX1.55AF21E3-74DF-4D18-ADA4-A2A12665DF0A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..22cc7b217b1f6b9123ef9fc3a3a92bb7dfec2d20 --- /dev/null +++ b/features/TCGA-UY-A9PD-01Z-00-DX1.55AF21E3-74DF-4D18-ADA4-A2A12665DF0A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20695, "total_number_of_tiles": 20695, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105575, 83646], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 21], "6": [52, 41], "7": [104, 82], "8": [207, 164], "9": [413, 327], "10": [825, 654], "11": [1650, 1307], "12": [3300, 2614], "13": [6599, 5228], "14": [13197, 10456], "15": [26394, 20912], "16": [52788, 41823], "17": [105575, 83646]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ae467848ac625f0f17b0674909d7f4b7"} \ No newline at end of file diff --git a/features/TCGA-UY-A9PE-01Z-00-DX1.19205347-9969-475E-9293-E99D4833E462.svs/features.npy b/features/TCGA-UY-A9PE-01Z-00-DX1.19205347-9969-475E-9293-E99D4833E462.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..360bbf33e6aeabf0bddecc82e6e9c3368bd8f046 --- /dev/null +++ b/features/TCGA-UY-A9PE-01Z-00-DX1.19205347-9969-475E-9293-E99D4833E462.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e3e32bcc6d165abac2d2eec182d70a16e688ba14661d471f2d8cfca8096609ab +size 184704984 diff --git a/features/TCGA-UY-A9PE-01Z-00-DX1.19205347-9969-475E-9293-E99D4833E462.svs/mask.npy b/features/TCGA-UY-A9PE-01Z-00-DX1.19205347-9969-475E-9293-E99D4833E462.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..34f3ab6dcbb85eb7b95b3df5681d377cec99b909 --- /dev/null +++ b/features/TCGA-UY-A9PE-01Z-00-DX1.19205347-9969-475E-9293-E99D4833E462.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c9f25263d43164b1851ea1fa8e46c119b059e86fda8188274dd09d508fd70ba +size 132334664 diff --git a/features/TCGA-UY-A9PE-01Z-00-DX1.19205347-9969-475E-9293-E99D4833E462.svs/metadata.json b/features/TCGA-UY-A9PE-01Z-00-DX1.19205347-9969-475E-9293-E99D4833E462.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ecbfa1c98f36ebdf5d6d8b3e94b47966a991bfd7 --- /dev/null +++ b/features/TCGA-UY-A9PE-01Z-00-DX1.19205347-9969-475E-9293-E99D4833E462.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22514, "total_number_of_tiles": 22514, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 68563], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 9], "5": [31, 17], "6": [61, 34], "7": [121, 67], "8": [242, 134], "9": [483, 268], "10": [965, 536], "11": [1930, 1072], "12": [3860, 2143], "13": [7719, 4286], "14": [15438, 8571], "15": [30876, 17141], "16": [61752, 34282], "17": [123503, 68563]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "94ad075b1f6a10efd8d607c4dbdd9753"} \ No newline at end of file diff --git a/features/TCGA-UY-A9PF-01Z-00-DX1.8A5B3826-48D2-42AE-A4DE-C0BB90134FCB.svs/features.npy b/features/TCGA-UY-A9PF-01Z-00-DX1.8A5B3826-48D2-42AE-A4DE-C0BB90134FCB.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0137a16ee6cad0fff9478df4cd2f4cdf01b90531 --- /dev/null +++ b/features/TCGA-UY-A9PF-01Z-00-DX1.8A5B3826-48D2-42AE-A4DE-C0BB90134FCB.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:75a3fc0d6d4652fc81f5033f1d0efc81e8b0412fe612d12ba06294421a931930 +size 130394504 diff --git a/features/TCGA-UY-A9PF-01Z-00-DX1.8A5B3826-48D2-42AE-A4DE-C0BB90134FCB.svs/mask.npy b/features/TCGA-UY-A9PF-01Z-00-DX1.8A5B3826-48D2-42AE-A4DE-C0BB90134FCB.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..689b734ac4c1cf848f67f6307272fdf7075d76ec --- /dev/null +++ b/features/TCGA-UY-A9PF-01Z-00-DX1.8A5B3826-48D2-42AE-A4DE-C0BB90134FCB.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fc170af05a425147a21635d6a8a89e8edeab52c2ea95d5f0a1ae311c5b6c00cd +size 208872512 diff --git a/features/TCGA-UY-A9PF-01Z-00-DX1.8A5B3826-48D2-42AE-A4DE-C0BB90134FCB.svs/metadata.json b/features/TCGA-UY-A9PF-01Z-00-DX1.8A5B3826-48D2-42AE-A4DE-C0BB90134FCB.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c0a981daded5a8210c30cc62b0cb5a6d4af0449e --- /dev/null +++ b/features/TCGA-UY-A9PF-01Z-00-DX1.8A5B3826-48D2-42AE-A4DE-C0BB90134FCB.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15894, "total_number_of_tiles": 15894, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [149399, 89459], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [19, 11], "6": [37, 22], "7": [73, 44], "8": [146, 88], "9": [292, 175], "10": [584, 350], "11": [1168, 699], "12": [2335, 1398], "13": [4669, 2796], "14": [9338, 5592], "15": [18675, 11183], "16": [37350, 22365], "17": [74700, 44730], "18": [149399, 89459]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "28a7b5b7b785ae6d326cabb3a0085262e5b7b359fe2eb2d8250d2c893d60d810"} \ No newline at end of file diff --git a/features/TCGA-UY-A9PH-01Z-00-DX1.7FAA1EC7-C2BB-47E0-BCEB-5D4095078B2E.svs/features.npy b/features/TCGA-UY-A9PH-01Z-00-DX1.7FAA1EC7-C2BB-47E0-BCEB-5D4095078B2E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cbf9f2d0ecefd3a32a8d6e1a42911c10cc334d5d --- /dev/null +++ b/features/TCGA-UY-A9PH-01Z-00-DX1.7FAA1EC7-C2BB-47E0-BCEB-5D4095078B2E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cdffcfc25fc7c4121dd96a76d6ebb1555f4ffbd210c5f6b926e521c030f6014e +size 187207204 diff --git a/features/TCGA-UY-A9PH-01Z-00-DX1.7FAA1EC7-C2BB-47E0-BCEB-5D4095078B2E.svs/mask.npy b/features/TCGA-UY-A9PH-01Z-00-DX1.7FAA1EC7-C2BB-47E0-BCEB-5D4095078B2E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9cfae8785eaa1b2d4f519160c3cef961ba83df50 --- /dev/null +++ b/features/TCGA-UY-A9PH-01Z-00-DX1.7FAA1EC7-C2BB-47E0-BCEB-5D4095078B2E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:518f982215c34504c19998c772c9fafe30b0ac268bda4dec4834a0a12333db2a +size 158332256 diff --git a/features/TCGA-UY-A9PH-01Z-00-DX1.7FAA1EC7-C2BB-47E0-BCEB-5D4095078B2E.svs/metadata.json b/features/TCGA-UY-A9PH-01Z-00-DX1.7FAA1EC7-C2BB-47E0-BCEB-5D4095078B2E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ab824fccd5ffec0d40e8251ef4c29ee25a5b3d4e --- /dev/null +++ b/features/TCGA-UY-A9PH-01Z-00-DX1.7FAA1EC7-C2BB-47E0-BCEB-5D4095078B2E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22819, "total_number_of_tiles": 22819, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 82040], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 21], "6": [61, 41], "7": [121, 81], "8": [242, 161], "9": [483, 321], "10": [965, 641], "11": [1930, 1282], "12": [3860, 2564], "13": [7719, 5128], "14": [15438, 10255], "15": [30876, 20510], "16": [61752, 41020], "17": [123503, 82040]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "03e8d477aa7c6905a90e9029916d247d"} \ No newline at end of file diff --git a/features/TCGA-XF-A8HB-01Z-00-DX1.D6874152-D20A-4CA4-8E8B-8CBAB5F7D7B5.svs/features.npy b/features/TCGA-XF-A8HB-01Z-00-DX1.D6874152-D20A-4CA4-8E8B-8CBAB5F7D7B5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..53382e217416c4a0d651a02494d80a15cfed89cf --- /dev/null +++ b/features/TCGA-XF-A8HB-01Z-00-DX1.D6874152-D20A-4CA4-8E8B-8CBAB5F7D7B5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:abc6240cc15f37bab9c3c4f80026da78f998b5f59164579f99c667ad2ba87e6c +size 107357672 diff --git a/features/TCGA-XF-A8HB-01Z-00-DX1.D6874152-D20A-4CA4-8E8B-8CBAB5F7D7B5.svs/mask.npy b/features/TCGA-XF-A8HB-01Z-00-DX1.D6874152-D20A-4CA4-8E8B-8CBAB5F7D7B5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6dcfea90b792ddd7689f2ecb80d6f2ac9edd92ca --- /dev/null +++ b/features/TCGA-XF-A8HB-01Z-00-DX1.D6874152-D20A-4CA4-8E8B-8CBAB5F7D7B5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4ec9052f566ed270e1b1e2ce20115e1d192b586b8de63d11159b50376d291d10 +size 132664340 diff --git a/features/TCGA-XF-A8HB-01Z-00-DX1.D6874152-D20A-4CA4-8E8B-8CBAB5F7D7B5.svs/metadata.json b/features/TCGA-XF-A8HB-01Z-00-DX1.D6874152-D20A-4CA4-8E8B-8CBAB5F7D7B5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..34fca61f1c4c52c63439147c03e6c54f9940074f --- /dev/null +++ b/features/TCGA-XF-A8HB-01Z-00-DX1.D6874152-D20A-4CA4-8E8B-8CBAB5F7D7B5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13086, "total_number_of_tiles": 13086, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115535, 73487], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 9], "5": [29, 18], "6": [57, 36], "7": [113, 72], "8": [226, 144], "9": [452, 288], "10": [903, 575], "11": [1806, 1149], "12": [3611, 2297], "13": [7221, 4593], "14": [14442, 9186], "15": [28884, 18372], "16": [57768, 36744], "17": [115535, 73487]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "dd82f30016176259e0a1f40a3ef81047"} \ No newline at end of file diff --git a/features/TCGA-XF-A8HC-01Z-00-DX1.BF199254-2954-4836-B037-E10493275D8C.svs/features.npy b/features/TCGA-XF-A8HC-01Z-00-DX1.BF199254-2954-4836-B037-E10493275D8C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d1f323a1f97e75d7162f31018509e1a2e26511df --- /dev/null +++ b/features/TCGA-XF-A8HC-01Z-00-DX1.BF199254-2954-4836-B037-E10493275D8C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e49c0bae47d10d1e3d029e7ca91890c70570306b2aad9795b7a989b5bf379b81 +size 185279264 diff --git a/features/TCGA-XF-A8HC-01Z-00-DX1.BF199254-2954-4836-B037-E10493275D8C.svs/mask.npy b/features/TCGA-XF-A8HC-01Z-00-DX1.BF199254-2954-4836-B037-E10493275D8C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1d3bd0d31bcfb68647888cb656209a4d246e2824 --- /dev/null +++ b/features/TCGA-XF-A8HC-01Z-00-DX1.BF199254-2954-4836-B037-E10493275D8C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6390fbb79a06727d1c178a3c4dfbc9e1d1d2c825bf70c8656dcca305ef3f9ce2 +size 157162512 diff --git a/features/TCGA-XF-A8HC-01Z-00-DX1.BF199254-2954-4836-B037-E10493275D8C.svs/metadata.json b/features/TCGA-XF-A8HC-01Z-00-DX1.BF199254-2954-4836-B037-E10493275D8C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..13c54cb9ae6829bbe1e959a1a0f2bb828ab26984 --- /dev/null +++ b/features/TCGA-XF-A8HC-01Z-00-DX1.BF199254-2954-4836-B037-E10493275D8C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22584, "total_number_of_tiles": 22584, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 80134], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [31, 20], "6": [62, 40], "7": [123, 79], "8": [246, 157], "9": [491, 314], "10": [981, 627], "11": [1961, 1253], "12": [3922, 2505], "13": [7844, 5009], "14": [15687, 10017], "15": [31374, 20034], "16": [62748, 40067], "17": [125495, 80134]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5011b868350b6cf13614c2ecd84f9a3b"} \ No newline at end of file diff --git a/features/TCGA-XF-A8HD-01Z-00-DX1.809538C0-0D52-4DA5-AA7D-EDA7B363BF36.svs/features.npy b/features/TCGA-XF-A8HD-01Z-00-DX1.809538C0-0D52-4DA5-AA7D-EDA7B363BF36.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cfcfbf4033223fd957f48c0c2e77f1e2c915e137 --- /dev/null +++ b/features/TCGA-XF-A8HD-01Z-00-DX1.809538C0-0D52-4DA5-AA7D-EDA7B363BF36.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e9524de52d4857dfb243c05663c13e09ca835c82f8bfc6ead1d7ead52f647f1a +size 173350648 diff --git a/features/TCGA-XF-A8HD-01Z-00-DX1.809538C0-0D52-4DA5-AA7D-EDA7B363BF36.svs/mask.npy b/features/TCGA-XF-A8HD-01Z-00-DX1.809538C0-0D52-4DA5-AA7D-EDA7B363BF36.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7fee531af2034af6a4103c129a12c0e702bd9e60 --- /dev/null +++ b/features/TCGA-XF-A8HD-01Z-00-DX1.809538C0-0D52-4DA5-AA7D-EDA7B363BF36.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85577f37ac177753deb389d4a78807cab7161803746473c80a58c4c2cd017d33 +size 132941132 diff --git a/features/TCGA-XF-A8HD-01Z-00-DX1.809538C0-0D52-4DA5-AA7D-EDA7B363BF36.svs/metadata.json b/features/TCGA-XF-A8HD-01Z-00-DX1.809538C0-0D52-4DA5-AA7D-EDA7B363BF36.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a90e0376fbaa3898bc07b73ffa300af379024100 --- /dev/null +++ b/features/TCGA-XF-A8HD-01Z-00-DX1.809538C0-0D52-4DA5-AA7D-EDA7B363BF36.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21130, "total_number_of_tiles": 21130, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113543, 74915], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [28, 19], "6": [56, 37], "7": [111, 74], "8": [222, 147], "9": [444, 293], "10": [888, 586], "11": [1775, 1171], "12": [3549, 2342], "13": [7097, 4683], "14": [14193, 9365], "15": [28386, 18729], "16": [56772, 37458], "17": [113543, 74915]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3e8f569858fe97a8ce0814204b91d884"} \ No newline at end of file diff --git a/features/TCGA-XF-A8HE-01Z-00-DX1.A0E05485-2A24-4BD0-8B2F-E0D9641ADD9F.svs/features.npy b/features/TCGA-XF-A8HE-01Z-00-DX1.A0E05485-2A24-4BD0-8B2F-E0D9641ADD9F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..dac86df510689fc9d24817ef04dcc3c42acc6484 --- /dev/null +++ b/features/TCGA-XF-A8HE-01Z-00-DX1.A0E05485-2A24-4BD0-8B2F-E0D9641ADD9F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:af1af9d4e423fd3578c373f37e0bd6eb6801653af968ac200f9ad72632ef485b +size 164933344 diff --git a/features/TCGA-XF-A8HE-01Z-00-DX1.A0E05485-2A24-4BD0-8B2F-E0D9641ADD9F.svs/mask.npy b/features/TCGA-XF-A8HE-01Z-00-DX1.A0E05485-2A24-4BD0-8B2F-E0D9641ADD9F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a38abbefff5b46c3024022212338c51cd2ed4132 --- /dev/null +++ b/features/TCGA-XF-A8HE-01Z-00-DX1.A0E05485-2A24-4BD0-8B2F-E0D9641ADD9F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:af18aa67465b2882be6460251af38ad6b7d0d6d3f6e6fda11cc10a88801ef226 +size 156518016 diff --git a/features/TCGA-XF-A8HE-01Z-00-DX1.A0E05485-2A24-4BD0-8B2F-E0D9641ADD9F.svs/metadata.json b/features/TCGA-XF-A8HE-01Z-00-DX1.A0E05485-2A24-4BD0-8B2F-E0D9641ADD9F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..89fc21e81d86f502c8a88d95cfe38fb08fe613a1 --- /dev/null +++ b/features/TCGA-XF-A8HE-01Z-00-DX1.A0E05485-2A24-4BD0-8B2F-E0D9641ADD9F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20104, "total_number_of_tiles": 20104, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109559, 91411], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [54, 45], "7": [107, 90], "8": [214, 179], "9": [428, 358], "10": [856, 715], "11": [1712, 1429], "12": [3424, 2857], "13": [6848, 5714], "14": [13695, 11427], "15": [27390, 22853], "16": [54780, 45706], "17": [109559, 91411]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b2f581ab567e56b87b2a0a0990cdf34d"} \ No newline at end of file diff --git a/features/TCGA-XF-A8HF-01Z-00-DX1.119AB9B9-73CE-4DE3-B305-4872F704E3E4.svs/features.npy b/features/TCGA-XF-A8HF-01Z-00-DX1.119AB9B9-73CE-4DE3-B305-4872F704E3E4.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..69b188fbefd4ef6f993bddcef15993cc555d224f --- /dev/null +++ b/features/TCGA-XF-A8HF-01Z-00-DX1.119AB9B9-73CE-4DE3-B305-4872F704E3E4.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:18a90a21cf2d13baf8ccddc28d6bdb6592b5f969e6c03653638b494c31d7b97d +size 203926956 diff --git a/features/TCGA-XF-A8HF-01Z-00-DX1.119AB9B9-73CE-4DE3-B305-4872F704E3E4.svs/mask.npy b/features/TCGA-XF-A8HF-01Z-00-DX1.119AB9B9-73CE-4DE3-B305-4872F704E3E4.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..60545344e89bd23d0d24db4ae38ddf7fe359eda2 --- /dev/null +++ b/features/TCGA-XF-A8HF-01Z-00-DX1.119AB9B9-73CE-4DE3-B305-4872F704E3E4.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:703c42eb890da90f50c3550d83f16f77fa9fab21a3eecf2b9389d7279d8e1067 +size 211592048 diff --git a/features/TCGA-XF-A8HF-01Z-00-DX1.119AB9B9-73CE-4DE3-B305-4872F704E3E4.svs/metadata.json b/features/TCGA-XF-A8HF-01Z-00-DX1.119AB9B9-73CE-4DE3-B305-4872F704E3E4.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5181036e1c61cfed20974e9fb6134d0c6744d266 --- /dev/null +++ b/features/TCGA-XF-A8HF-01Z-00-DX1.119AB9B9-73CE-4DE3-B305-4872F704E3E4.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24857, "total_number_of_tiles": 24857, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [145415, 93111], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [36, 23], "7": [72, 46], "8": [143, 91], "9": [285, 182], "10": [569, 364], "11": [1137, 728], "12": [2273, 1455], "13": [4545, 2910], "14": [9089, 5820], "15": [18177, 11639], "16": [36354, 23278], "17": [72708, 46556], "18": [145415, 93111]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5afedf582638d565082a941edb46deeb5ddb319fff6b12c600629e6e2690df41"} \ No newline at end of file diff --git a/features/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.svs/features.npy b/features/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b7e3b7ec3777e637371a01a94cb54da4113c6fc6 --- /dev/null +++ b/features/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3332f88f18a1a50a14b5462d029138f881d897ebe6f1e10c6fa706d5cda06f09 +size 184073276 diff --git a/features/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.svs/mask.npy b/features/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e23b5c17158939226656c068eda23d1187525b70 --- /dev/null +++ b/features/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:423100ce7302ed024177f00df11512b1e6554435866f84092c712bb172f01eab +size 182178488 diff --git a/features/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.svs/metadata.json b/features/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..00cb40b49cc7bbc8397d2a444a89d979936890f4 --- /dev/null +++ b/features/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22437, "total_number_of_tiles": 22437, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [139439, 83605], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 11], "6": [35, 21], "7": [69, 41], "8": [137, 82], "9": [273, 164], "10": [545, 327], "11": [1090, 654], "12": [2179, 1307], "13": [4358, 2613], "14": [8715, 5226], "15": [17430, 10451], "16": [34860, 20902], "17": [69720, 41803], "18": [139439, 83605]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f095bdeb1729f3e7a3cdddba58d08624cbb2e11408e63952be6b3b2aa7687f5a"} \ No newline at end of file diff --git a/features/TCGA-XF-A8HH-01Z-00-DX1.22E9DD6D-F231-422F-A349-9FF60B65D50E.svs/features.npy b/features/TCGA-XF-A8HH-01Z-00-DX1.22E9DD6D-F231-422F-A349-9FF60B65D50E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6f0ba87240128ba331b7a5cbbe501227d3845140 --- /dev/null +++ b/features/TCGA-XF-A8HH-01Z-00-DX1.22E9DD6D-F231-422F-A349-9FF60B65D50E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1f3b4814db36cdc85637533dec7939a5adab2e2264bd8b630e78986102882d19 +size 211942264 diff --git a/features/TCGA-XF-A8HH-01Z-00-DX1.22E9DD6D-F231-422F-A349-9FF60B65D50E.svs/mask.npy b/features/TCGA-XF-A8HH-01Z-00-DX1.22E9DD6D-F231-422F-A349-9FF60B65D50E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6f73e66bd78fdf73cf42f1ec9e0e191d66476103 --- /dev/null +++ b/features/TCGA-XF-A8HH-01Z-00-DX1.22E9DD6D-F231-422F-A349-9FF60B65D50E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9b934ab030c88f4fdc7febf3c61714e5bf9a2e372032883578056d23e6b7e31f +size 166238504 diff --git a/features/TCGA-XF-A8HH-01Z-00-DX1.22E9DD6D-F231-422F-A349-9FF60B65D50E.svs/metadata.json b/features/TCGA-XF-A8HH-01Z-00-DX1.22E9DD6D-F231-422F-A349-9FF60B65D50E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ca04a0bdf1b5b303fd795c8e00830ad8cc46e753 --- /dev/null +++ b/features/TCGA-XF-A8HH-01Z-00-DX1.22E9DD6D-F231-422F-A349-9FF60B65D50E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25834, "total_number_of_tiles": 25834, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135455, 78536], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [17, 10], "6": [34, 20], "7": [67, 39], "8": [133, 77], "9": [265, 154], "10": [530, 307], "11": [1059, 614], "12": [2117, 1228], "13": [4233, 2455], "14": [8466, 4909], "15": [16932, 9817], "16": [33864, 19634], "17": [67728, 39268], "18": [135455, 78536]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1264b0985b6f071a17f92a28d863d8f84d32556a438db676604bfae84fd74c9b"} \ No newline at end of file diff --git a/features/TCGA-XF-A8HI-01Z-00-DX1.1BA3EF33-D4D5-4213-833D-A7F8C0EFFF02.svs/features.npy b/features/TCGA-XF-A8HI-01Z-00-DX1.1BA3EF33-D4D5-4213-833D-A7F8C0EFFF02.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..3db78325e97e5a87519df2f9f249f903c49137b3 --- /dev/null +++ b/features/TCGA-XF-A8HI-01Z-00-DX1.1BA3EF33-D4D5-4213-833D-A7F8C0EFFF02.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8173309bffb21be00e5b804745594f5b87d5156684029388c963fb7445cebe19 +size 225068664 diff --git a/features/TCGA-XF-A8HI-01Z-00-DX1.1BA3EF33-D4D5-4213-833D-A7F8C0EFFF02.svs/mask.npy b/features/TCGA-XF-A8HI-01Z-00-DX1.1BA3EF33-D4D5-4213-833D-A7F8C0EFFF02.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1a5bea221982371e1f4b7284930fae4bb292e6e2 --- /dev/null +++ b/features/TCGA-XF-A8HI-01Z-00-DX1.1BA3EF33-D4D5-4213-833D-A7F8C0EFFF02.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ba6e049a38fd3919a72da4aab2158cc2e7a3842d2edacd0ccf2eae30cb91aad8 +size 162180772 diff --git a/features/TCGA-XF-A8HI-01Z-00-DX1.1BA3EF33-D4D5-4213-833D-A7F8C0EFFF02.svs/metadata.json b/features/TCGA-XF-A8HI-01Z-00-DX1.1BA3EF33-D4D5-4213-833D-A7F8C0EFFF02.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..171080e4e32d9080ceb322d71451c2b3e46b8d1e --- /dev/null +++ b/features/TCGA-XF-A8HI-01Z-00-DX1.1BA3EF33-D4D5-4213-833D-A7F8C0EFFF02.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 27434, "total_number_of_tiles": 27434, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113543, 91405], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [28, 23], "6": [56, 45], "7": [111, 90], "8": [222, 179], "9": [444, 358], "10": [888, 715], "11": [1775, 1429], "12": [3549, 2857], "13": [7097, 5713], "14": [14193, 11426], "15": [28386, 22852], "16": [56772, 45703], "17": [113543, 91405]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "26996f08c27f99bfc0dbe0f210311176"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SG-01Z-00-DX1.6D50B71D-9736-46F9-B527-63565FC65AF2.svs/features.npy b/features/TCGA-XF-A9SG-01Z-00-DX1.6D50B71D-9736-46F9-B527-63565FC65AF2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..475f317a84764e94f21a9a2c217a9cad7731413a --- /dev/null +++ b/features/TCGA-XF-A9SG-01Z-00-DX1.6D50B71D-9736-46F9-B527-63565FC65AF2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7ae15a9173637926ef00823b554f6767c43bcaf1b3acd7631a2a37077731b33a +size 84452104 diff --git a/features/TCGA-XF-A9SG-01Z-00-DX1.6D50B71D-9736-46F9-B527-63565FC65AF2.svs/mask.npy b/features/TCGA-XF-A9SG-01Z-00-DX1.6D50B71D-9736-46F9-B527-63565FC65AF2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c03cd3463cadd06eb12ba69863b61ee577341721 --- /dev/null +++ b/features/TCGA-XF-A9SG-01Z-00-DX1.6D50B71D-9736-46F9-B527-63565FC65AF2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ce72eb187767d843fac8e8a15e3e9f9fb3c1863b528796fdf92c140c7abad6a6 +size 118091864 diff --git a/features/TCGA-XF-A9SG-01Z-00-DX1.6D50B71D-9736-46F9-B527-63565FC65AF2.svs/metadata.json b/features/TCGA-XF-A9SG-01Z-00-DX1.6D50B71D-9736-46F9-B527-63565FC65AF2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4c493f4da4fc603e223bd11723866455118a981e --- /dev/null +++ b/features/TCGA-XF-A9SG-01Z-00-DX1.6D50B71D-9736-46F9-B527-63565FC65AF2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10294, "total_number_of_tiles": 10294, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [83663, 90331], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 12], "5": [21, 23], "6": [41, 45], "7": [82, 89], "8": [164, 177], "9": [327, 353], "10": [654, 706], "11": [1308, 1412], "12": [2615, 2823], "13": [5229, 5646], "14": [10458, 11292], "15": [20916, 22583], "16": [41832, 45166], "17": [83663, 90331]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a26e905aad40d5df3e3e74337ad70895aed572de2c21efbff691416444f1ecbc"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SH-01Z-00-DX1.B1E33049-ABB8-4F2F-9D2D-503E48B8CDE5.svs/features.npy b/features/TCGA-XF-A9SH-01Z-00-DX1.B1E33049-ABB8-4F2F-9D2D-503E48B8CDE5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4eb511ec891512a90416ea6b1ee8427c6ac5db3b --- /dev/null +++ b/features/TCGA-XF-A9SH-01Z-00-DX1.B1E33049-ABB8-4F2F-9D2D-503E48B8CDE5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:abe59f4366159290da7face9bdc725dace5cab5354edb209fa282d7a79d184b3 +size 106233724 diff --git a/features/TCGA-XF-A9SH-01Z-00-DX1.B1E33049-ABB8-4F2F-9D2D-503E48B8CDE5.svs/mask.npy b/features/TCGA-XF-A9SH-01Z-00-DX1.B1E33049-ABB8-4F2F-9D2D-503E48B8CDE5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8ae67d94a4cbc4c598d4ae6c07153cf9ce6165ed --- /dev/null +++ b/features/TCGA-XF-A9SH-01Z-00-DX1.B1E33049-ABB8-4F2F-9D2D-503E48B8CDE5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f66adc31356f5667107b27ba861dfa55fe514c6b1e4ef02f701f95d653b0de32 +size 88244732 diff --git a/features/TCGA-XF-A9SH-01Z-00-DX1.B1E33049-ABB8-4F2F-9D2D-503E48B8CDE5.svs/metadata.json b/features/TCGA-XF-A9SH-01Z-00-DX1.B1E33049-ABB8-4F2F-9D2D-503E48B8CDE5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2a88808525334dad0a778ef97a98c99bd6fa7540 --- /dev/null +++ b/features/TCGA-XF-A9SH-01Z-00-DX1.B1E33049-ABB8-4F2F-9D2D-503E48B8CDE5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12949, "total_number_of_tiles": 12949, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [83663, 67499], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 9], "5": [21, 17], "6": [41, 33], "7": [82, 66], "8": [164, 132], "9": [327, 264], "10": [654, 528], "11": [1308, 1055], "12": [2615, 2110], "13": [5229, 4219], "14": [10458, 8438], "15": [20916, 16875], "16": [41832, 33750], "17": [83663, 67499]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "025c405b6a6e64d3bc4a6a2a81753701d29e73ca7c8fd21fb19cc9bb6e49acb5"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SI-01Z-00-DX1.537F0394-40FE-4CB7-8524-7BC34F624C15.svs/features.npy b/features/TCGA-XF-A9SI-01Z-00-DX1.537F0394-40FE-4CB7-8524-7BC34F624C15.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..05844ef265a21ef2921afb60066f1c914778dba3 --- /dev/null +++ b/features/TCGA-XF-A9SI-01Z-00-DX1.537F0394-40FE-4CB7-8524-7BC34F624C15.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3c59be3793296cf212d68337fc0958c65a7ff20a96acb910a209e165d10cf6ff +size 195148676 diff --git a/features/TCGA-XF-A9SI-01Z-00-DX1.537F0394-40FE-4CB7-8524-7BC34F624C15.svs/mask.npy b/features/TCGA-XF-A9SI-01Z-00-DX1.537F0394-40FE-4CB7-8524-7BC34F624C15.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..26cda634b251a2e70721dce1315fe2f091db0fb7 --- /dev/null +++ b/features/TCGA-XF-A9SI-01Z-00-DX1.537F0394-40FE-4CB7-8524-7BC34F624C15.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5bd43e3be0bae6315699434208a186e51829cd0949bbb23a818837c3fb5928d0 +size 135842360 diff --git a/features/TCGA-XF-A9SI-01Z-00-DX1.537F0394-40FE-4CB7-8524-7BC34F624C15.svs/metadata.json b/features/TCGA-XF-A9SI-01Z-00-DX1.537F0394-40FE-4CB7-8524-7BC34F624C15.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..07d854e9799369aa115ab1cd12637b0043a19ad4 --- /dev/null +++ b/features/TCGA-XF-A9SI-01Z-00-DX1.537F0394-40FE-4CB7-8524-7BC34F624C15.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 23787, "total_number_of_tiles": 23787, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [117527, 73959], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [29, 19], "6": [58, 37], "7": [115, 73], "8": [230, 145], "9": [460, 289], "10": [919, 578], "11": [1837, 1156], "12": [3673, 2312], "13": [7346, 4623], "14": [14691, 9245], "15": [29382, 18490], "16": [58764, 36980], "17": [117527, 73959]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9f1830db4d246e086dad66ad7a7d6ab6"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SJ-01Z-00-DX1.AED4FF1B-441D-47EE-B7E5-CC6C595D3D98.svs/features.npy b/features/TCGA-XF-A9SJ-01Z-00-DX1.AED4FF1B-441D-47EE-B7E5-CC6C595D3D98.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..844401fb5c2aa7098d8cb7950e1da8f257ee8925 --- /dev/null +++ b/features/TCGA-XF-A9SJ-01Z-00-DX1.AED4FF1B-441D-47EE-B7E5-CC6C595D3D98.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:207b4b447286db71d89a1d78468f451ec7dea234704adaa8e3d10b0463d00418 +size 198807660 diff --git a/features/TCGA-XF-A9SJ-01Z-00-DX1.AED4FF1B-441D-47EE-B7E5-CC6C595D3D98.svs/mask.npy b/features/TCGA-XF-A9SJ-01Z-00-DX1.AED4FF1B-441D-47EE-B7E5-CC6C595D3D98.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5655c48f036130b347339e3c77f2efbaa363c915 --- /dev/null +++ b/features/TCGA-XF-A9SJ-01Z-00-DX1.AED4FF1B-441D-47EE-B7E5-CC6C595D3D98.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1842fded002db13b7024c4ff289a9e0a53b9c96799e8df830a85a6816e9bb154 +size 146462108 diff --git a/features/TCGA-XF-A9SJ-01Z-00-DX1.AED4FF1B-441D-47EE-B7E5-CC6C595D3D98.svs/metadata.json b/features/TCGA-XF-A9SJ-01Z-00-DX1.AED4FF1B-441D-47EE-B7E5-CC6C595D3D98.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8c355e15d9355c3c547aa6ef6ab328659c023645 --- /dev/null +++ b/features/TCGA-XF-A9SJ-01Z-00-DX1.AED4FF1B-441D-47EE-B7E5-CC6C595D3D98.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24233, "total_number_of_tiles": 24233, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 77126], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [30, 19], "6": [60, 38], "7": [119, 76], "8": [238, 151], "9": [475, 302], "10": [950, 603], "11": [1899, 1206], "12": [3798, 2411], "13": [7595, 4821], "14": [15189, 9641], "15": [30378, 19282], "16": [60756, 38563], "17": [121511, 77126]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3a1b9b874921857a50dc94eebb78f00e"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SK-01Z-00-DX1.1D198106-323F-463B-832B-CB3A03E7B343.svs/features.npy b/features/TCGA-XF-A9SK-01Z-00-DX1.1D198106-323F-463B-832B-CB3A03E7B343.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b78e91f37e67faabf607bbc97ffe8061113f1c3e --- /dev/null +++ b/features/TCGA-XF-A9SK-01Z-00-DX1.1D198106-323F-463B-832B-CB3A03E7B343.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9b90756a4aa23f2526a958bd8fe1410a96c9224d12beec2077b2a3f5e80f7e3b +size 169831132 diff --git a/features/TCGA-XF-A9SK-01Z-00-DX1.1D198106-323F-463B-832B-CB3A03E7B343.svs/mask.npy b/features/TCGA-XF-A9SK-01Z-00-DX1.1D198106-323F-463B-832B-CB3A03E7B343.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..555d70b6a7b4af4b38696b606a7bb986c278e978 --- /dev/null +++ b/features/TCGA-XF-A9SK-01Z-00-DX1.1D198106-323F-463B-832B-CB3A03E7B343.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1337cb164b7235eac72e8373919e7d74dc956b829ad9439847a36b826b23499d +size 155247644 diff --git a/features/TCGA-XF-A9SK-01Z-00-DX1.1D198106-323F-463B-832B-CB3A03E7B343.svs/metadata.json b/features/TCGA-XF-A9SK-01Z-00-DX1.1D198106-323F-463B-832B-CB3A03E7B343.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f7b5f06a96c0ca9e114f407a58c9d1ccf72b6ff7 --- /dev/null +++ b/features/TCGA-XF-A9SK-01Z-00-DX1.1D198106-323F-463B-832B-CB3A03E7B343.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20701, "total_number_of_tiles": 20701, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107567, 92364], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [53, 46], "7": [106, 91], "8": [211, 181], "9": [421, 361], "10": [841, 722], "11": [1681, 1444], "12": [3362, 2887], "13": [6723, 5773], "14": [13446, 11546], "15": [26892, 23091], "16": [53784, 46182], "17": [107567, 92364]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "47903dd3cb2f0a6dede8aa658e8dc989"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SL-01Z-00-DX1.AA56A70C-28E1-4140-9B15-72AB0D5051A6.svs/features.npy b/features/TCGA-XF-A9SL-01Z-00-DX1.AA56A70C-28E1-4140-9B15-72AB0D5051A6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..656fddb165bcaeed3c2c54f809158f797259113c --- /dev/null +++ b/features/TCGA-XF-A9SL-01Z-00-DX1.AA56A70C-28E1-4140-9B15-72AB0D5051A6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:46dc3258158fb00f225fc9f28dd445e4347131a728245a6efc2b6e94518f8f67 +size 113994708 diff --git a/features/TCGA-XF-A9SL-01Z-00-DX1.AA56A70C-28E1-4140-9B15-72AB0D5051A6.svs/mask.npy b/features/TCGA-XF-A9SL-01Z-00-DX1.AA56A70C-28E1-4140-9B15-72AB0D5051A6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..fb84f0f3eadf324b624666e8345065d2edb2dcaf --- /dev/null +++ b/features/TCGA-XF-A9SL-01Z-00-DX1.AA56A70C-28E1-4140-9B15-72AB0D5051A6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4c5e1fe7f7b38c5a85410aa9d8445a781d9513c3a54602231a4e04d4b959976b +size 182199404 diff --git a/features/TCGA-XF-A9SL-01Z-00-DX1.AA56A70C-28E1-4140-9B15-72AB0D5051A6.svs/metadata.json b/features/TCGA-XF-A9SL-01Z-00-DX1.AA56A70C-28E1-4140-9B15-72AB0D5051A6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..238bbb5f00ff47d12e0e8d0e76e36271d73e113d --- /dev/null +++ b/features/TCGA-XF-A9SL-01Z-00-DX1.AA56A70C-28E1-4140-9B15-72AB0D5051A6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13895, "total_number_of_tiles": 13895, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 94407], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 24], "6": [61, 47], "7": [121, 93], "8": [242, 185], "9": [483, 369], "10": [965, 738], "11": [1930, 1476], "12": [3860, 2951], "13": [7719, 5901], "14": [15438, 11801], "15": [30876, 23602], "16": [61752, 47204], "17": [123503, 94407]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "65c78632cb57e4eeb05e99939594b93d"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SM-01Z-00-DX1.7AADC753-E07E-44A5-91EC-D1740ED5A168.svs/features.npy b/features/TCGA-XF-A9SM-01Z-00-DX1.7AADC753-E07E-44A5-91EC-D1740ED5A168.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e486eae3b6c153d49e0a04e6f307a497753daa8d --- /dev/null +++ b/features/TCGA-XF-A9SM-01Z-00-DX1.7AADC753-E07E-44A5-91EC-D1740ED5A168.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:aee1a4094707aa136d95b0c7b25414c7f0997babddf96ca141327b5d19215d4b +size 162824916 diff --git a/features/TCGA-XF-A9SM-01Z-00-DX1.7AADC753-E07E-44A5-91EC-D1740ED5A168.svs/mask.npy b/features/TCGA-XF-A9SM-01Z-00-DX1.7AADC753-E07E-44A5-91EC-D1740ED5A168.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..caceb596d1308630e3d150cae97a0897d99a26a3 --- /dev/null +++ b/features/TCGA-XF-A9SM-01Z-00-DX1.7AADC753-E07E-44A5-91EC-D1740ED5A168.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85f4a16a11af3ffa65367edbad90494e03003061576a33556a9ae5aa6b220fda +size 217758596 diff --git a/features/TCGA-XF-A9SM-01Z-00-DX1.7AADC753-E07E-44A5-91EC-D1740ED5A168.svs/metadata.json b/features/TCGA-XF-A9SM-01Z-00-DX1.7AADC753-E07E-44A5-91EC-D1740ED5A168.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..494c06a0d7d85eb59ed73218396765d52cb331ee --- /dev/null +++ b/features/TCGA-XF-A9SM-01Z-00-DX1.7AADC753-E07E-44A5-91EC-D1740ED5A168.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19847, "total_number_of_tiles": 19847, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [147407, 94536], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [36, 24], "7": [72, 47], "8": [144, 93], "9": [288, 185], "10": [576, 370], "11": [1152, 739], "12": [2304, 1478], "13": [4607, 2955], "14": [9213, 5909], "15": [18426, 11817], "16": [36852, 23634], "17": [73704, 47268], "18": [147407, 94536]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "75584c3afd57e9560eb60cc2322ed12f11ecd58f8c203640c652312a7db1defc"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SP-01Z-00-DX1.7F3BF700-89AD-4045-AFCD-C94F1F959B41.svs/features.npy b/features/TCGA-XF-A9SP-01Z-00-DX1.7F3BF700-89AD-4045-AFCD-C94F1F959B41.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..765bc77cc2bcc082fb7b4e9eed3a80cda7c64930 --- /dev/null +++ b/features/TCGA-XF-A9SP-01Z-00-DX1.7F3BF700-89AD-4045-AFCD-C94F1F959B41.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:837462fa898521461abacb872f116f285fa75c002218144b1be46ebfe8f03327 +size 131822000 diff --git a/features/TCGA-XF-A9SP-01Z-00-DX1.7F3BF700-89AD-4045-AFCD-C94F1F959B41.svs/mask.npy b/features/TCGA-XF-A9SP-01Z-00-DX1.7F3BF700-89AD-4045-AFCD-C94F1F959B41.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..20b4b55014bec99868e89b798d451875af805bf2 --- /dev/null +++ b/features/TCGA-XF-A9SP-01Z-00-DX1.7F3BF700-89AD-4045-AFCD-C94F1F959B41.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:994ff635ebc77262461cda9385ffff47b263b38fe155d8aadce52fcd636ea0df +size 188724200 diff --git a/features/TCGA-XF-A9SP-01Z-00-DX1.7F3BF700-89AD-4045-AFCD-C94F1F959B41.svs/metadata.json b/features/TCGA-XF-A9SP-01Z-00-DX1.7F3BF700-89AD-4045-AFCD-C94F1F959B41.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fdb0baff592b1c4bfabdaaa414eb8b17c564883a --- /dev/null +++ b/features/TCGA-XF-A9SP-01Z-00-DX1.7F3BF700-89AD-4045-AFCD-C94F1F959B41.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16068, "total_number_of_tiles": 16068, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135455, 89160], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 11], "6": [34, 22], "7": [67, 44], "8": [133, 88], "9": [265, 175], "10": [530, 349], "11": [1059, 697], "12": [2117, 1394], "13": [4233, 2787], "14": [8466, 5573], "15": [16932, 11145], "16": [33864, 22290], "17": [67728, 44580], "18": [135455, 89160]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "edc57283d6f694e28e0995ecd11bcc32a6bce57e89b1d33d2901e9d939d8c261"} \ No newline at end of file diff --git a/features/TCGA-XF-A9ST-01Z-00-DX1.C135C4EB-6A64-4B9E-A8A0-87B72594568C.svs/features.npy b/features/TCGA-XF-A9ST-01Z-00-DX1.C135C4EB-6A64-4B9E-A8A0-87B72594568C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c246068211830be291d8875307a0fdc28e706ca5 --- /dev/null +++ b/features/TCGA-XF-A9ST-01Z-00-DX1.C135C4EB-6A64-4B9E-A8A0-87B72594568C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3fc9866543ae4ad502b788ddda069e1c42f7906cac52ee5828bac7f8bc2babaf +size 87717296 diff --git a/features/TCGA-XF-A9ST-01Z-00-DX1.C135C4EB-6A64-4B9E-A8A0-87B72594568C.svs/mask.npy b/features/TCGA-XF-A9ST-01Z-00-DX1.C135C4EB-6A64-4B9E-A8A0-87B72594568C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6f960403087c476ce50e689d676524a6fd258e1c --- /dev/null +++ b/features/TCGA-XF-A9ST-01Z-00-DX1.C135C4EB-6A64-4B9E-A8A0-87B72594568C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3e0768c8ba6d900075765be2f608bd91783900cd6e8015b74d77b6037f92016c +size 80460992 diff --git a/features/TCGA-XF-A9ST-01Z-00-DX1.C135C4EB-6A64-4B9E-A8A0-87B72594568C.svs/metadata.json b/features/TCGA-XF-A9ST-01Z-00-DX1.C135C4EB-6A64-4B9E-A8A0-87B72594568C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..35359db4497e274f5701260efd3f0bac652f5581 --- /dev/null +++ b/features/TCGA-XF-A9ST-01Z-00-DX1.C135C4EB-6A64-4B9E-A8A0-87B72594568C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10692, "total_number_of_tiles": 10692, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [71711, 71794], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [5, 5], "4": [9, 9], "5": [18, 18], "6": [36, 36], "7": [71, 71], "8": [141, 141], "9": [281, 281], "10": [561, 561], "11": [1121, 1122], "12": [2241, 2244], "13": [4482, 4488], "14": [8964, 8975], "15": [17928, 17949], "16": [35856, 35897], "17": [71711, 71794]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "4af91b81f4d97619ef486a79e19482359f54d68af70795aafe5ba4c3666d41b0"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SU-01Z-00-DX1.35E2DDBE-5BB9-443B-A3D5-20F77D1C6B92.svs/features.npy b/features/TCGA-XF-A9SU-01Z-00-DX1.35E2DDBE-5BB9-443B-A3D5-20F77D1C6B92.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2b9659682d2a47015055f53589082d1b0055925a --- /dev/null +++ b/features/TCGA-XF-A9SU-01Z-00-DX1.35E2DDBE-5BB9-443B-A3D5-20F77D1C6B92.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:87b4da5d1b347f70a12a40b3f066ffd23ed10aebd79def29bd041cc46993837c +size 125217780 diff --git a/features/TCGA-XF-A9SU-01Z-00-DX1.35E2DDBE-5BB9-443B-A3D5-20F77D1C6B92.svs/mask.npy b/features/TCGA-XF-A9SU-01Z-00-DX1.35E2DDBE-5BB9-443B-A3D5-20F77D1C6B92.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..40172c334cd46f4f87a4eb11e7d0333da0094d4b --- /dev/null +++ b/features/TCGA-XF-A9SU-01Z-00-DX1.35E2DDBE-5BB9-443B-A3D5-20F77D1C6B92.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d97e77fa2ec574ec5c44ba85ef05179008a24cd0a1220b3257e4897c2f365783 +size 141805628 diff --git a/features/TCGA-XF-A9SU-01Z-00-DX1.35E2DDBE-5BB9-443B-A3D5-20F77D1C6B92.svs/metadata.json b/features/TCGA-XF-A9SU-01Z-00-DX1.35E2DDBE-5BB9-443B-A3D5-20F77D1C6B92.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bbcf2e7cd92f8046c1e315e2dd633e67085e5fc7 --- /dev/null +++ b/features/TCGA-XF-A9SU-01Z-00-DX1.35E2DDBE-5BB9-443B-A3D5-20F77D1C6B92.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15263, "total_number_of_tiles": 15263, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [99599, 91106], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [25, 23], "6": [49, 45], "7": [98, 89], "8": [195, 178], "9": [390, 356], "10": [779, 712], "11": [1557, 1424], "12": [3113, 2848], "13": [6225, 5695], "14": [12450, 11389], "15": [24900, 22777], "16": [49800, 45553], "17": [99599, 91106]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7a4bed04120d72ae0f4c1466de9a4d6a"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SV-01Z-00-DX1.2ACAA181-2EFA-4E63-B692-D968BCC56031.svs/features.npy b/features/TCGA-XF-A9SV-01Z-00-DX1.2ACAA181-2EFA-4E63-B692-D968BCC56031.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e771c584c1437e75c721961e0926e0a9cf64b3d1 --- /dev/null +++ b/features/TCGA-XF-A9SV-01Z-00-DX1.2ACAA181-2EFA-4E63-B692-D968BCC56031.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:00450e61315c2223d575ceaa62960d190688828a8d359de64c1d674d874dd30f +size 220991276 diff --git a/features/TCGA-XF-A9SV-01Z-00-DX1.2ACAA181-2EFA-4E63-B692-D968BCC56031.svs/mask.npy b/features/TCGA-XF-A9SV-01Z-00-DX1.2ACAA181-2EFA-4E63-B692-D968BCC56031.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..014078a965417f8a479595d081a20c34468f0b97 --- /dev/null +++ b/features/TCGA-XF-A9SV-01Z-00-DX1.2ACAA181-2EFA-4E63-B692-D968BCC56031.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9527fbea9c498f9f2a8c75c1adb7414c8a0f9bc4e6b84409354a0e12b6666f8f +size 168687668 diff --git a/features/TCGA-XF-A9SV-01Z-00-DX1.2ACAA181-2EFA-4E63-B692-D968BCC56031.svs/metadata.json b/features/TCGA-XF-A9SV-01Z-00-DX1.2ACAA181-2EFA-4E63-B692-D968BCC56031.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1978dbc81b84e3e0b9ceb05e8abc51da2c2a1016 --- /dev/null +++ b/features/TCGA-XF-A9SV-01Z-00-DX1.2ACAA181-2EFA-4E63-B692-D968BCC56031.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26937, "total_number_of_tiles": 26937, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [139439, 77422], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 5], "5": [18, 10], "6": [35, 19], "7": [69, 38], "8": [137, 76], "9": [273, 152], "10": [545, 303], "11": [1090, 605], "12": [2179, 1210], "13": [4358, 2420], "14": [8715, 4839], "15": [17430, 9678], "16": [34860, 19356], "17": [69720, 38711], "18": [139439, 77422]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "edc4d81b1020b02d994255727d3493cd419b395f0c17451d5fa4cb07cb8c9d86"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SW-01Z-00-DX1.3FC62DD6-E5D2-4F74-A937-A2A62946E5C0.svs/features.npy b/features/TCGA-XF-A9SW-01Z-00-DX1.3FC62DD6-E5D2-4F74-A937-A2A62946E5C0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d8f444f386e906086759d143f55fdcb3491c4563 --- /dev/null +++ b/features/TCGA-XF-A9SW-01Z-00-DX1.3FC62DD6-E5D2-4F74-A937-A2A62946E5C0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:43fa392e0bd31f29fadb711df580e55139b6856871abe1aef5fd0b7a21593c03 +size 130607808 diff --git a/features/TCGA-XF-A9SW-01Z-00-DX1.3FC62DD6-E5D2-4F74-A937-A2A62946E5C0.svs/mask.npy b/features/TCGA-XF-A9SW-01Z-00-DX1.3FC62DD6-E5D2-4F74-A937-A2A62946E5C0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5a5d392223fe4624d5b7660c5e8ecf0207d9c1b2 --- /dev/null +++ b/features/TCGA-XF-A9SW-01Z-00-DX1.3FC62DD6-E5D2-4F74-A937-A2A62946E5C0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bcf9e2fe5e9a3e2b52ee08d5698eb8abec765136b653fe4979114ddc0364365d +size 109877280 diff --git a/features/TCGA-XF-A9SW-01Z-00-DX1.3FC62DD6-E5D2-4F74-A937-A2A62946E5C0.svs/metadata.json b/features/TCGA-XF-A9SW-01Z-00-DX1.3FC62DD6-E5D2-4F74-A937-A2A62946E5C0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..17ca6048ad2b66d628cafe8e14386f9bd5b7c979 --- /dev/null +++ b/features/TCGA-XF-A9SW-01Z-00-DX1.3FC62DD6-E5D2-4F74-A937-A2A62946E5C0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15920, "total_number_of_tiles": 15920, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93623, 75099], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 10], "5": [23, 19], "6": [46, 37], "7": [92, 74], "8": [183, 147], "9": [366, 294], "10": [732, 587], "11": [1463, 1174], "12": [2926, 2347], "13": [5852, 4694], "14": [11703, 9388], "15": [23406, 18775], "16": [46812, 37550], "17": [93623, 75099]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d8cefa36eb7dc3e6921000b2a86e9e1c"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SX-01Z-00-DX1.6DB4572E-915C-491F-BE68-99C019799E20.svs/features.npy b/features/TCGA-XF-A9SX-01Z-00-DX1.6DB4572E-915C-491F-BE68-99C019799E20.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..68803a6ac08c074d2bf9beab85a458eb4ea4c56a --- /dev/null +++ b/features/TCGA-XF-A9SX-01Z-00-DX1.6DB4572E-915C-491F-BE68-99C019799E20.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:808defd7a7c7660c400a7cc7ee2740633588dbafd1080e04ca877cf6faf4d138 +size 143676780 diff --git a/features/TCGA-XF-A9SX-01Z-00-DX1.6DB4572E-915C-491F-BE68-99C019799E20.svs/mask.npy b/features/TCGA-XF-A9SX-01Z-00-DX1.6DB4572E-915C-491F-BE68-99C019799E20.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d3b8f0e949fbfb8cbfe2f269096b93d463386eda --- /dev/null +++ b/features/TCGA-XF-A9SX-01Z-00-DX1.6DB4572E-915C-491F-BE68-99C019799E20.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f0b0daf21645771ef7414b27bb90699f3a33dbb16fceb379671ea35d332cef03 +size 128073520 diff --git a/features/TCGA-XF-A9SX-01Z-00-DX1.6DB4572E-915C-491F-BE68-99C019799E20.svs/metadata.json b/features/TCGA-XF-A9SX-01Z-00-DX1.6DB4572E-915C-491F-BE68-99C019799E20.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e9619eb7adcfd4e4103bddc820a7f9c01518bb9b --- /dev/null +++ b/features/TCGA-XF-A9SX-01Z-00-DX1.6DB4572E-915C-491F-BE68-99C019799E20.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17513, "total_number_of_tiles": 17513, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105575, 77621], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [26, 19], "6": [52, 38], "7": [104, 76], "8": [207, 152], "9": [413, 304], "10": [825, 607], "11": [1650, 1213], "12": [3300, 2426], "13": [6599, 4852], "14": [13197, 9703], "15": [26394, 19406], "16": [52788, 38811], "17": [105575, 77621]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a0afed2b4f452479fe46db2c1400f79e"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SY-01Z-00-DX1.758C5D9F-274B-4D4A-92D3-78728CB35139.svs/features.npy b/features/TCGA-XF-A9SY-01Z-00-DX1.758C5D9F-274B-4D4A-92D3-78728CB35139.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d202e2435bb22e56ac63b60a7310cfbc08d244e8 --- /dev/null +++ b/features/TCGA-XF-A9SY-01Z-00-DX1.758C5D9F-274B-4D4A-92D3-78728CB35139.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ba8f5be3e653f042bf58d87b764c016fd45ed14436959562de0a1a1d3d02f54b +size 147434212 diff --git a/features/TCGA-XF-A9SY-01Z-00-DX1.758C5D9F-274B-4D4A-92D3-78728CB35139.svs/mask.npy b/features/TCGA-XF-A9SY-01Z-00-DX1.758C5D9F-274B-4D4A-92D3-78728CB35139.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1d2d31359b33972d098fcbd2c2a1e4d81595eed1 --- /dev/null +++ b/features/TCGA-XF-A9SY-01Z-00-DX1.758C5D9F-274B-4D4A-92D3-78728CB35139.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:48065aa3129771278ee0fee9d56fba45da9f8480aca1469f35433496ea173cdc +size 202060448 diff --git a/features/TCGA-XF-A9SY-01Z-00-DX1.758C5D9F-274B-4D4A-92D3-78728CB35139.svs/metadata.json b/features/TCGA-XF-A9SY-01Z-00-DX1.758C5D9F-274B-4D4A-92D3-78728CB35139.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bb69be1fcf13f93465fc490c159d01a2c5130f0e --- /dev/null +++ b/features/TCGA-XF-A9SY-01Z-00-DX1.758C5D9F-274B-4D4A-92D3-78728CB35139.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17971, "total_number_of_tiles": 17971, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [137447, 94071], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [34, 23], "7": [68, 46], "8": [135, 92], "9": [269, 184], "10": [537, 368], "11": [1074, 735], "12": [2148, 1470], "13": [4296, 2940], "14": [8591, 5880], "15": [17181, 11759], "16": [34362, 23518], "17": [68724, 47036], "18": [137447, 94071]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2515380bd604281cab8e9e776ffceeaa2bf2a36ffc2618786950ed8ecd0f97b5"} \ No newline at end of file diff --git a/features/TCGA-XF-A9SZ-01Z-00-DX1.42A301F5-42E9-4618-A85A-51C1AEC8B8D1.svs/features.npy b/features/TCGA-XF-A9SZ-01Z-00-DX1.42A301F5-42E9-4618-A85A-51C1AEC8B8D1.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..87da61fcb97071b3000ab5a3c3aff4a4d6545763 --- /dev/null +++ b/features/TCGA-XF-A9SZ-01Z-00-DX1.42A301F5-42E9-4618-A85A-51C1AEC8B8D1.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8bef0172525fab96398fa66fd958814d38a7eac065244ff0b8325b866c779ce9 +size 203795692 diff --git a/features/TCGA-XF-A9SZ-01Z-00-DX1.42A301F5-42E9-4618-A85A-51C1AEC8B8D1.svs/mask.npy b/features/TCGA-XF-A9SZ-01Z-00-DX1.42A301F5-42E9-4618-A85A-51C1AEC8B8D1.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..764973bd0e3098acb56147e9c4a1926b0cdbd63c --- /dev/null +++ b/features/TCGA-XF-A9SZ-01Z-00-DX1.42A301F5-42E9-4618-A85A-51C1AEC8B8D1.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6aa259d0cf0a27a6cd93d15e67ec98f6ec83fc2936c4865d2cf3d30dc4dd3721 +size 152477348 diff --git a/features/TCGA-XF-A9SZ-01Z-00-DX1.42A301F5-42E9-4618-A85A-51C1AEC8B8D1.svs/metadata.json b/features/TCGA-XF-A9SZ-01Z-00-DX1.42A301F5-42E9-4618-A85A-51C1AEC8B8D1.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cea5ed5bd9c118fe8541cc82f61ffcd1ca432c18 --- /dev/null +++ b/features/TCGA-XF-A9SZ-01Z-00-DX1.42A301F5-42E9-4618-A85A-51C1AEC8B8D1.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24841, "total_number_of_tiles": 24841, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 80296], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [30, 20], "6": [60, 40], "7": [119, 79], "8": [238, 157], "9": [475, 314], "10": [950, 628], "11": [1899, 1255], "12": [3798, 2510], "13": [7595, 5019], "14": [15189, 10037], "15": [30378, 20074], "16": [60756, 40148], "17": [121511, 80296]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "822428b790de453e4e5fa4a5f9e6d72b"} \ No newline at end of file diff --git a/features/TCGA-XF-A9T0-01Z-00-DX1.63C52F23-3DE3-4D3A-914E-E7F3CB23D410.svs/features.npy b/features/TCGA-XF-A9T0-01Z-00-DX1.63C52F23-3DE3-4D3A-914E-E7F3CB23D410.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2f74cb834e17db7aa2d2f5bc90f350a7bd0b6ac7 --- /dev/null +++ b/features/TCGA-XF-A9T0-01Z-00-DX1.63C52F23-3DE3-4D3A-914E-E7F3CB23D410.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e83b13db1dfde4fb61ec4b0dc0d687d5bdd6ed7e381fd9130503911d5724e27b +size 132888520 diff --git a/features/TCGA-XF-A9T0-01Z-00-DX1.63C52F23-3DE3-4D3A-914E-E7F3CB23D410.svs/mask.npy b/features/TCGA-XF-A9T0-01Z-00-DX1.63C52F23-3DE3-4D3A-914E-E7F3CB23D410.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c1683caa929ca0dd494b9223739fb4bf6bbcfc1c --- /dev/null +++ b/features/TCGA-XF-A9T0-01Z-00-DX1.63C52F23-3DE3-4D3A-914E-E7F3CB23D410.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e3d8729392333468d4e8ce778ab82f97f14d2ce422fcb9c9485c804855223666 +size 207513740 diff --git a/features/TCGA-XF-A9T0-01Z-00-DX1.63C52F23-3DE3-4D3A-914E-E7F3CB23D410.svs/metadata.json b/features/TCGA-XF-A9T0-01Z-00-DX1.63C52F23-3DE3-4D3A-914E-E7F3CB23D410.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c41274333d3aef7c2772335957ddbe58d98b098f --- /dev/null +++ b/features/TCGA-XF-A9T0-01Z-00-DX1.63C52F23-3DE3-4D3A-914E-E7F3CB23D410.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16198, "total_number_of_tiles": 16198, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [147407, 90096], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 11], "6": [36, 22], "7": [72, 44], "8": [144, 88], "9": [288, 176], "10": [576, 352], "11": [1152, 704], "12": [2304, 1408], "13": [4607, 2816], "14": [9213, 5631], "15": [18426, 11262], "16": [36852, 22524], "17": [73704, 45048], "18": [147407, 90096]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0db0a425355339de6d06766b738ebf39230eeed130bd12aad4f061939e64d262"} \ No newline at end of file diff --git a/features/TCGA-XF-A9T2-01Z-00-DX1.E33F796C-46EB-44C4-AC65-ED6098EE3043.svs/features.npy b/features/TCGA-XF-A9T2-01Z-00-DX1.E33F796C-46EB-44C4-AC65-ED6098EE3043.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..813ecba219c9c45eedbf2fcba015bdf9e08d4114 --- /dev/null +++ b/features/TCGA-XF-A9T2-01Z-00-DX1.E33F796C-46EB-44C4-AC65-ED6098EE3043.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c045a2d9556782ef2d0f73a99b5ddb0f9cf48fde04763f61c6a492716748e063 +size 222886400 diff --git a/features/TCGA-XF-A9T2-01Z-00-DX1.E33F796C-46EB-44C4-AC65-ED6098EE3043.svs/mask.npy b/features/TCGA-XF-A9T2-01Z-00-DX1.E33F796C-46EB-44C4-AC65-ED6098EE3043.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9cdadbd32696abc42ffbc5b0b0c5006b4396a410 --- /dev/null +++ b/features/TCGA-XF-A9T2-01Z-00-DX1.E33F796C-46EB-44C4-AC65-ED6098EE3043.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:33eb9bf776bc715e9eee28f650c259b0b6f15d7b887d16c2b397aba0b15ec002 +size 160505880 diff --git a/features/TCGA-XF-A9T2-01Z-00-DX1.E33F796C-46EB-44C4-AC65-ED6098EE3043.svs/metadata.json b/features/TCGA-XF-A9T2-01Z-00-DX1.E33F796C-46EB-44C4-AC65-ED6098EE3043.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..96519e5adfa89ec230f01bcb6eae99a44508631f --- /dev/null +++ b/features/TCGA-XF-A9T2-01Z-00-DX1.E33F796C-46EB-44C4-AC65-ED6098EE3043.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 27168, "total_number_of_tiles": 27168, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [113543, 90455], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [28, 23], "6": [56, 45], "7": [111, 89], "8": [222, 177], "9": [444, 354], "10": [888, 707], "11": [1775, 1414], "12": [3549, 2827], "13": [7097, 5654], "14": [14193, 11307], "15": [28386, 22614], "16": [56772, 45228], "17": [113543, 90455]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3af0ba61bee546ca98941cadf450545b"} \ No newline at end of file diff --git a/features/TCGA-XF-A9T3-01Z-00-DX1.408F9901-F442-420B-BE89-ADBD01D1E256.svs/features.npy b/features/TCGA-XF-A9T3-01Z-00-DX1.408F9901-F442-420B-BE89-ADBD01D1E256.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e71d1f9acf5ea4ca2640df58b23fd2cd3d717fb9 --- /dev/null +++ b/features/TCGA-XF-A9T3-01Z-00-DX1.408F9901-F442-420B-BE89-ADBD01D1E256.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5c76495986e15acc758a84329434384941348523e59f5cf628af90691d6fe9ef +size 159608948 diff --git a/features/TCGA-XF-A9T3-01Z-00-DX1.408F9901-F442-420B-BE89-ADBD01D1E256.svs/mask.npy b/features/TCGA-XF-A9T3-01Z-00-DX1.408F9901-F442-420B-BE89-ADBD01D1E256.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..94da7e1958f95f1d392489ec4d7dee4adb7514e3 --- /dev/null +++ b/features/TCGA-XF-A9T3-01Z-00-DX1.408F9901-F442-420B-BE89-ADBD01D1E256.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e795ca3b14c9c4213a7c7834e11cd71db4d2e836676c8c03228d8eb53412d7d2 +size 149117264 diff --git a/features/TCGA-XF-A9T3-01Z-00-DX1.408F9901-F442-420B-BE89-ADBD01D1E256.svs/metadata.json b/features/TCGA-XF-A9T3-01Z-00-DX1.408F9901-F442-420B-BE89-ADBD01D1E256.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e02475dc16ccab18a31c3a599744b233907cd530 --- /dev/null +++ b/features/TCGA-XF-A9T3-01Z-00-DX1.408F9901-F442-420B-BE89-ADBD01D1E256.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19455, "total_number_of_tiles": 19455, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111551, 85541], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [28, 21], "6": [55, 42], "7": [109, 84], "8": [218, 168], "9": [436, 335], "10": [872, 669], "11": [1743, 1337], "12": [3486, 2674], "13": [6972, 5347], "14": [13944, 10693], "15": [27888, 21386], "16": [55776, 42771], "17": [111551, 85541]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "65d3954ade271e732e785948bf818b69"} \ No newline at end of file diff --git a/features/TCGA-XF-A9T4-01Z-00-DX1.1F44D95D-E341-4FBA-BCB5-43E89E6C359E.svs/features.npy b/features/TCGA-XF-A9T4-01Z-00-DX1.1F44D95D-E341-4FBA-BCB5-43E89E6C359E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b507f50609d91e07e2dffad3d8e92b79f0c03b99 --- /dev/null +++ b/features/TCGA-XF-A9T4-01Z-00-DX1.1F44D95D-E341-4FBA-BCB5-43E89E6C359E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:af17ad8b462b34e96313d908716f9de17dc5cc721f5de9cfdd59d5f97708a99f +size 120763008 diff --git a/features/TCGA-XF-A9T4-01Z-00-DX1.1F44D95D-E341-4FBA-BCB5-43E89E6C359E.svs/mask.npy b/features/TCGA-XF-A9T4-01Z-00-DX1.1F44D95D-E341-4FBA-BCB5-43E89E6C359E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e5bb8bdd75c51a7aed3ed70180cfa76036cd6d1a --- /dev/null +++ b/features/TCGA-XF-A9T4-01Z-00-DX1.1F44D95D-E341-4FBA-BCB5-43E89E6C359E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9306b85275be8ce6c0e421e2ba9f26fb943bbd7da256ab3c50c6fd811776bbb0 +size 151554476 diff --git a/features/TCGA-XF-A9T4-01Z-00-DX1.1F44D95D-E341-4FBA-BCB5-43E89E6C359E.svs/metadata.json b/features/TCGA-XF-A9T4-01Z-00-DX1.1F44D95D-E341-4FBA-BCB5-43E89E6C359E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..48a0259fbd9d7461dd4b59dfb0f08a329e501fff --- /dev/null +++ b/features/TCGA-XF-A9T4-01Z-00-DX1.1F44D95D-E341-4FBA-BCB5-43E89E6C359E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14720, "total_number_of_tiles": 14720, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115535, 83950], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [29, 21], "6": [57, 41], "7": [113, 82], "8": [226, 164], "9": [452, 328], "10": [903, 656], "11": [1806, 1312], "12": [3611, 2624], "13": [7221, 5247], "14": [14442, 10494], "15": [28884, 20988], "16": [57768, 41975], "17": [115535, 83950]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "07bc9845b46459a271fb1a60fda63c3e"} \ No newline at end of file diff --git a/features/TCGA-XF-A9T5-01Z-00-DX1.B0A44AF2-B075-4280-809E-DDACCDB20E3D.svs/features.npy b/features/TCGA-XF-A9T5-01Z-00-DX1.B0A44AF2-B075-4280-809E-DDACCDB20E3D.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6a296430b5f3e48721510dd09f15f27510413d20 --- /dev/null +++ b/features/TCGA-XF-A9T5-01Z-00-DX1.B0A44AF2-B075-4280-809E-DDACCDB20E3D.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:891837acfa9905fd0174a0844824c9174c3942a076d6b7b3df823762d198d9c5 +size 114355684 diff --git a/features/TCGA-XF-A9T5-01Z-00-DX1.B0A44AF2-B075-4280-809E-DDACCDB20E3D.svs/mask.npy b/features/TCGA-XF-A9T5-01Z-00-DX1.B0A44AF2-B075-4280-809E-DDACCDB20E3D.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a23405e1c7931187051e2669153cc3204cb39658 --- /dev/null +++ b/features/TCGA-XF-A9T5-01Z-00-DX1.B0A44AF2-B075-4280-809E-DDACCDB20E3D.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1c8f89f385d094b0a50d2760c64068fcbd74089ef77237b07333ead213bdaae9 +size 157121120 diff --git a/features/TCGA-XF-A9T5-01Z-00-DX1.B0A44AF2-B075-4280-809E-DDACCDB20E3D.svs/metadata.json b/features/TCGA-XF-A9T5-01Z-00-DX1.B0A44AF2-B075-4280-809E-DDACCDB20E3D.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ca81634154afdd58d8ea59b5aaf6a1a7461e3246 --- /dev/null +++ b/features/TCGA-XF-A9T5-01Z-00-DX1.B0A44AF2-B075-4280-809E-DDACCDB20E3D.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13939, "total_number_of_tiles": 13939, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111551, 90138], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [28, 23], "6": [55, 45], "7": [109, 89], "8": [218, 177], "9": [436, 353], "10": [872, 705], "11": [1743, 1409], "12": [3486, 2817], "13": [6972, 5634], "14": [13944, 11268], "15": [27888, 22535], "16": [55776, 45069], "17": [111551, 90138]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "571c0b9d40c6fb77c342dc7b04180f39"} \ No newline at end of file diff --git a/features/TCGA-XF-A9T6-01Z-00-DX1.57AE17FC-DB4C-4D2B-A53F-A259E8482064.svs/features.npy b/features/TCGA-XF-A9T6-01Z-00-DX1.57AE17FC-DB4C-4D2B-A53F-A259E8482064.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d463ce158eafbe5adfba969994766624279fdd21 --- /dev/null +++ b/features/TCGA-XF-A9T6-01Z-00-DX1.57AE17FC-DB4C-4D2B-A53F-A259E8482064.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bd527343cfcda78ecd387a1edee8021471b3ba922990392861a84765157457b5 +size 238851384 diff --git a/features/TCGA-XF-A9T6-01Z-00-DX1.57AE17FC-DB4C-4D2B-A53F-A259E8482064.svs/mask.npy b/features/TCGA-XF-A9T6-01Z-00-DX1.57AE17FC-DB4C-4D2B-A53F-A259E8482064.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..50787e49586d79086bc8be7cadecfce46035bb6e --- /dev/null +++ b/features/TCGA-XF-A9T6-01Z-00-DX1.57AE17FC-DB4C-4D2B-A53F-A259E8482064.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:235d3b79bf950fa43d7b795b5f0f66b1fb35c65babb8b68facd3d65b98cace8f +size 176620808 diff --git a/features/TCGA-XF-A9T6-01Z-00-DX1.57AE17FC-DB4C-4D2B-A53F-A259E8482064.svs/metadata.json b/features/TCGA-XF-A9T6-01Z-00-DX1.57AE17FC-DB4C-4D2B-A53F-A259E8482064.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..806c4db018f0abe9fb9337949657e713366709c7 --- /dev/null +++ b/features/TCGA-XF-A9T6-01Z-00-DX1.57AE17FC-DB4C-4D2B-A53F-A259E8482064.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 29114, "total_number_of_tiles": 29114, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119519, 94568], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 24], "6": [59, 47], "7": [117, 93], "8": [234, 185], "9": [467, 370], "10": [934, 739], "11": [1868, 1478], "12": [3735, 2956], "13": [7470, 5911], "14": [14940, 11821], "15": [29880, 23642], "16": [59760, 47284], "17": [119519, 94568]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c889095e265caa2da41d29f3b11ad904"} \ No newline at end of file diff --git a/features/TCGA-XF-A9T8-01Z-00-DX1.C18E4176-C0C1-4F5A-B128-23DF5CE77C05.svs/features.npy b/features/TCGA-XF-A9T8-01Z-00-DX1.C18E4176-C0C1-4F5A-B128-23DF5CE77C05.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0735f96cf4549a48a46a5a3ca530baee4a8fbb89 --- /dev/null +++ b/features/TCGA-XF-A9T8-01Z-00-DX1.C18E4176-C0C1-4F5A-B128-23DF5CE77C05.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8facade5c24c2efb41ec00d2e69c075e019d7f3ca9c0fbf38b2d201c13e57b79 +size 146318468 diff --git a/features/TCGA-XF-A9T8-01Z-00-DX1.C18E4176-C0C1-4F5A-B128-23DF5CE77C05.svs/mask.npy b/features/TCGA-XF-A9T8-01Z-00-DX1.C18E4176-C0C1-4F5A-B128-23DF5CE77C05.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..62199448dcb698a324d31b7a80e69bb7ea6667c9 --- /dev/null +++ b/features/TCGA-XF-A9T8-01Z-00-DX1.C18E4176-C0C1-4F5A-B128-23DF5CE77C05.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2c7ee723ce92dd928832dcb89c6d12be3a60fe59279124a9fd9e6a2e720b601a +size 117882704 diff --git a/features/TCGA-XF-A9T8-01Z-00-DX1.C18E4176-C0C1-4F5A-B128-23DF5CE77C05.svs/metadata.json b/features/TCGA-XF-A9T8-01Z-00-DX1.C18E4176-C0C1-4F5A-B128-23DF5CE77C05.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..be310e977c05286534482613cf1934469d953fa7 --- /dev/null +++ b/features/TCGA-XF-A9T8-01Z-00-DX1.C18E4176-C0C1-4F5A-B128-23DF5CE77C05.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 17835, "total_number_of_tiles": 17835, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [111551, 67625], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 9], "5": [28, 17], "6": [55, 34], "7": [109, 67], "8": [218, 133], "9": [436, 265], "10": [872, 529], "11": [1743, 1057], "12": [3486, 2114], "13": [6972, 4227], "14": [13944, 8454], "15": [27888, 16907], "16": [55776, 33813], "17": [111551, 67625]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d7d3a74219d52ca6e880570b08a50838"} \ No newline at end of file diff --git a/features/TCGA-XF-AAME-01Z-00-DX1.90E1555F-CBAF-434C-9C7E-5BAC38069AC7.svs/features.npy b/features/TCGA-XF-AAME-01Z-00-DX1.90E1555F-CBAF-434C-9C7E-5BAC38069AC7.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..02219e5b2790f8d19d18e92b68347c30ce7d188e --- /dev/null +++ b/features/TCGA-XF-AAME-01Z-00-DX1.90E1555F-CBAF-434C-9C7E-5BAC38069AC7.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:839a3fc9ca69d1f2925b1d9293da69ca67c90671a58350efa3fd70689a1a4600 +size 127678980 diff --git a/features/TCGA-XF-AAME-01Z-00-DX1.90E1555F-CBAF-434C-9C7E-5BAC38069AC7.svs/mask.npy b/features/TCGA-XF-AAME-01Z-00-DX1.90E1555F-CBAF-434C-9C7E-5BAC38069AC7.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b67a6e36bbaba92b4282c9b056e0a01cbd8a3d12 --- /dev/null +++ b/features/TCGA-XF-AAME-01Z-00-DX1.90E1555F-CBAF-434C-9C7E-5BAC38069AC7.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fea6658eb46fb349cb5f83df6a2964b27e72524cb0d94fd1ddca3b1d8e7066a2 +size 133299328 diff --git a/features/TCGA-XF-AAME-01Z-00-DX1.90E1555F-CBAF-434C-9C7E-5BAC38069AC7.svs/metadata.json b/features/TCGA-XF-AAME-01Z-00-DX1.90E1555F-CBAF-434C-9C7E-5BAC38069AC7.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ea729e2307d1f1aa3fe17a4e35b5aa8c59403828 --- /dev/null +++ b/features/TCGA-XF-AAME-01Z-00-DX1.90E1555F-CBAF-434C-9C7E-5BAC38069AC7.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15563, "total_number_of_tiles": 15563, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101591, 83967], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [25, 21], "6": [50, 41], "7": [100, 82], "8": [199, 164], "9": [397, 328], "10": [794, 656], "11": [1588, 1312], "12": [3175, 2624], "13": [6350, 5248], "14": [12699, 10496], "15": [25398, 20992], "16": [50796, 41984], "17": [101591, 83967]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ed9f5ac7ff96c3e55cc70e4fed296a33"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMF-01Z-00-DX1.01371D44-969E-44C8-993B-13B83D9E4F0F.svs/features.npy b/features/TCGA-XF-AAMF-01Z-00-DX1.01371D44-969E-44C8-993B-13B83D9E4F0F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..65607898f212e61ec89857740efb175b09450138 --- /dev/null +++ b/features/TCGA-XF-AAMF-01Z-00-DX1.01371D44-969E-44C8-993B-13B83D9E4F0F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:92a83c678cd33dc69b32ae5335b54904535e28efeacdb58426255668c7100e40 +size 50077344 diff --git a/features/TCGA-XF-AAMF-01Z-00-DX1.01371D44-969E-44C8-993B-13B83D9E4F0F.svs/mask.npy b/features/TCGA-XF-AAMF-01Z-00-DX1.01371D44-969E-44C8-993B-13B83D9E4F0F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1cb8eed025f632bcbc89438f2ed3e4f4c9a46d0e --- /dev/null +++ b/features/TCGA-XF-AAMF-01Z-00-DX1.01371D44-969E-44C8-993B-13B83D9E4F0F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0f7ff135e27947f63a3b1a26d7e466281057262c23100ca27f45d6960738f2c0 +size 121159336 diff --git a/features/TCGA-XF-AAMF-01Z-00-DX1.01371D44-969E-44C8-993B-13B83D9E4F0F.svs/metadata.json b/features/TCGA-XF-AAMF-01Z-00-DX1.01371D44-969E-44C8-993B-13B83D9E4F0F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c7a86c6191650f9318ab796aab2296805fadce04 --- /dev/null +++ b/features/TCGA-XF-AAMF-01Z-00-DX1.01371D44-969E-44C8-993B-13B83D9E4F0F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 6104, "total_number_of_tiles": 6104, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [133463, 58086], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [9, 4], "5": [17, 8], "6": [33, 15], "7": [66, 29], "8": [131, 57], "9": [261, 114], "10": [522, 227], "11": [1043, 454], "12": [2086, 908], "13": [4171, 1816], "14": [8342, 3631], "15": [16683, 7261], "16": [33366, 14522], "17": [66732, 29043], "18": [133463, 58086]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0a8649306fc859929fb77026868c3d828a42ddd1e1277475f5f1a876f3f1e209"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMG-01Z-00-DX1.E0234C99-915C-4190-805A-147D4E3B10D9.svs/features.npy b/features/TCGA-XF-AAMG-01Z-00-DX1.E0234C99-915C-4190-805A-147D4E3B10D9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..904c46ca3cfe4b0bf9117a0e421c1b2cc24ea857 --- /dev/null +++ b/features/TCGA-XF-AAMG-01Z-00-DX1.E0234C99-915C-4190-805A-147D4E3B10D9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:149810c354d95444c26cc22b49105447175fc76f9c5ede59a10850fcfe8c913c +size 137269456 diff --git a/features/TCGA-XF-AAMG-01Z-00-DX1.E0234C99-915C-4190-805A-147D4E3B10D9.svs/mask.npy b/features/TCGA-XF-AAMG-01Z-00-DX1.E0234C99-915C-4190-805A-147D4E3B10D9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..420fa3d4e7aff9cc664278b5f853374456fbf1e0 --- /dev/null +++ b/features/TCGA-XF-AAMG-01Z-00-DX1.E0234C99-915C-4190-805A-147D4E3B10D9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bbf92ef00836b7a1e8a81b395f3fa8437b5f5bf24656eb4fad264c7e7b82f4fe +size 106546776 diff --git a/features/TCGA-XF-AAMG-01Z-00-DX1.E0234C99-915C-4190-805A-147D4E3B10D9.svs/metadata.json b/features/TCGA-XF-AAMG-01Z-00-DX1.E0234C99-915C-4190-805A-147D4E3B10D9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cd7e5fd55a3f1ab86ed320718288b8bdb29a2e81 --- /dev/null +++ b/features/TCGA-XF-AAMG-01Z-00-DX1.E0234C99-915C-4190-805A-147D4E3B10D9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16732, "total_number_of_tiles": 16732, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [89639, 76055], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 10], "5": [22, 19], "6": [44, 38], "7": [88, 75], "8": [176, 149], "9": [351, 298], "10": [701, 595], "11": [1401, 1189], "12": [2802, 2377], "13": [5603, 4754], "14": [11205, 9507], "15": [22410, 19014], "16": [44820, 38028], "17": [89639, 76055]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "da2a717d5b1e08588a299a65e5bec394"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMH-01Z-00-DX1.AB5E1C7D-C3BF-4A69-B614-0ED69F8A3C07.svs/features.npy b/features/TCGA-XF-AAMH-01Z-00-DX1.AB5E1C7D-C3BF-4A69-B614-0ED69F8A3C07.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9f656408b168a2b7edca10baee54655588b500b5 --- /dev/null +++ b/features/TCGA-XF-AAMH-01Z-00-DX1.AB5E1C7D-C3BF-4A69-B614-0ED69F8A3C07.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e3c777daa5261ebb3e3d9af04676641981e1e54825a91354227c02361364dd13 +size 173728032 diff --git a/features/TCGA-XF-AAMH-01Z-00-DX1.AB5E1C7D-C3BF-4A69-B614-0ED69F8A3C07.svs/mask.npy b/features/TCGA-XF-AAMH-01Z-00-DX1.AB5E1C7D-C3BF-4A69-B614-0ED69F8A3C07.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..df806981b3a90afa541afa516b6262831180d840 --- /dev/null +++ b/features/TCGA-XF-AAMH-01Z-00-DX1.AB5E1C7D-C3BF-4A69-B614-0ED69F8A3C07.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d9b0b87c6173c33d865b66446e301fbb6524d977ff493bf9c3aea7c954c0e26c +size 121515116 diff --git a/features/TCGA-XF-AAMH-01Z-00-DX1.AB5E1C7D-C3BF-4A69-B614-0ED69F8A3C07.svs/metadata.json b/features/TCGA-XF-AAMH-01Z-00-DX1.AB5E1C7D-C3BF-4A69-B614-0ED69F8A3C07.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e4e018e688c82ddd3ea44d12b7a0f5351f0362ef --- /dev/null +++ b/features/TCGA-XF-AAMH-01Z-00-DX1.AB5E1C7D-C3BF-4A69-B614-0ED69F8A3C07.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21176, "total_number_of_tiles": 21176, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115535, 67303], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 9], "5": [29, 17], "6": [57, 33], "7": [113, 66], "8": [226, 132], "9": [452, 263], "10": [903, 526], "11": [1806, 1052], "12": [3611, 2104], "13": [7221, 4207], "14": [14442, 8413], "15": [28884, 16826], "16": [57768, 33652], "17": [115535, 67303]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a389766df2e1a690984bfac0ab6b1d94"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.svs/features.npy b/features/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4e50f88fdc3faefad7484a6a4a73b3e55d49fe5c --- /dev/null +++ b/features/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:155f01af5ff5d0fa4f96fd76fc656b977e1f801418a8f62a6b11fc984265a419 +size 123519552 diff --git a/features/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.svs/mask.npy b/features/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..98730c8960eeb82f8102dcf26fdfae858348bf7c --- /dev/null +++ b/features/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fba6be6fc240863ae1b8892c240f3f70cbae779c9b1614966492ea99318837e3 +size 92885096 diff --git a/features/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.svs/metadata.json b/features/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6f1b927dc55656036e2ad5f810f1b822b777b337 --- /dev/null +++ b/features/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15056, "total_number_of_tiles": 15056, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [87647, 67813], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [11, 9], "5": [22, 17], "6": [43, 34], "7": [86, 67], "8": [172, 133], "9": [343, 265], "10": [685, 530], "11": [1370, 1060], "12": [2739, 2120], "13": [5478, 4239], "14": [10956, 8477], "15": [21912, 16954], "16": [43824, 33907], "17": [87647, 67813]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "b7ff7b6d35651fb34ac17094c5eefd3db0e17ce0a38168ae4a13058daf67b6f3"} \ No newline at end of file diff --git a/features/TCGA-XF-AAML-01Z-00-DX1.E2780FA6-641F-4A5A-B755-9ABD3C57C13E.svs/features.npy b/features/TCGA-XF-AAML-01Z-00-DX1.E2780FA6-641F-4A5A-B755-9ABD3C57C13E.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..fd7bd6b99ad15e1a8d4b38ab33683c3f6544d53d --- /dev/null +++ b/features/TCGA-XF-AAML-01Z-00-DX1.E2780FA6-641F-4A5A-B755-9ABD3C57C13E.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4c6d23505b7ec36c3c8001efeaa27aeb2b00777fe71fb091295a657223184472 +size 288026160 diff --git a/features/TCGA-XF-AAML-01Z-00-DX1.E2780FA6-641F-4A5A-B755-9ABD3C57C13E.svs/mask.npy b/features/TCGA-XF-AAML-01Z-00-DX1.E2780FA6-641F-4A5A-B755-9ABD3C57C13E.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..dca10fdb343d704a3e24157a8288fd9d397af1db --- /dev/null +++ b/features/TCGA-XF-AAML-01Z-00-DX1.E2780FA6-641F-4A5A-B755-9ABD3C57C13E.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:99e84a8def7c82c0d8cd76087412ef48046386e63d2f8802775b68f3a49fbfd7 +size 182639824 diff --git a/features/TCGA-XF-AAML-01Z-00-DX1.E2780FA6-641F-4A5A-B755-9ABD3C57C13E.svs/metadata.json b/features/TCGA-XF-AAML-01Z-00-DX1.E2780FA6-641F-4A5A-B755-9ABD3C57C13E.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..dda0a98c7217c97b5924aaa6ef6232bd7bc4166f --- /dev/null +++ b/features/TCGA-XF-AAML-01Z-00-DX1.E2780FA6-641F-4A5A-B755-9ABD3C57C13E.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 35108, "total_number_of_tiles": 35108, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 93135], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [62, 46], "7": [123, 91], "8": [246, 182], "9": [491, 364], "10": [981, 728], "11": [1961, 1456], "12": [3922, 2911], "13": [7844, 5821], "14": [15687, 11642], "15": [31374, 23284], "16": [62748, 46568], "17": [125495, 93135]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "25a87478b8e988f429bd7f2f41c0bcf6"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMQ-01Z-00-DX1.E8D304A9-4BD0-4C62-8B01-4C00994F8EE9.svs/features.npy b/features/TCGA-XF-AAMQ-01Z-00-DX1.E8D304A9-4BD0-4C62-8B01-4C00994F8EE9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1e73db3302edff427b3a327a041d43824a077a7a --- /dev/null +++ b/features/TCGA-XF-AAMQ-01Z-00-DX1.E8D304A9-4BD0-4C62-8B01-4C00994F8EE9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ef6a0ecb4f692adac262aa6aa70a4684f4e9e2a0ae757b538a0847833fa2524c +size 137203824 diff --git a/features/TCGA-XF-AAMQ-01Z-00-DX1.E8D304A9-4BD0-4C62-8B01-4C00994F8EE9.svs/mask.npy b/features/TCGA-XF-AAMQ-01Z-00-DX1.E8D304A9-4BD0-4C62-8B01-4C00994F8EE9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7ebafe83e3b04d1f4080149ba9cc59153b03533b --- /dev/null +++ b/features/TCGA-XF-AAMQ-01Z-00-DX1.E8D304A9-4BD0-4C62-8B01-4C00994F8EE9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:98bd4fffeeb90d542c28f6beabba3e6527fe6784f5632f2197fd7774f80ac744 +size 111010304 diff --git a/features/TCGA-XF-AAMQ-01Z-00-DX1.E8D304A9-4BD0-4C62-8B01-4C00994F8EE9.svs/metadata.json b/features/TCGA-XF-AAMQ-01Z-00-DX1.E8D304A9-4BD0-4C62-8B01-4C00994F8EE9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a1fb49a26a9cb64f7db20d2e231791b86b011d2f --- /dev/null +++ b/features/TCGA-XF-AAMQ-01Z-00-DX1.E8D304A9-4BD0-4C62-8B01-4C00994F8EE9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16724, "total_number_of_tiles": 16724, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107567, 66045], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 9], "5": [27, 17], "6": [53, 33], "7": [106, 65], "8": [211, 129], "9": [421, 258], "10": [841, 516], "11": [1681, 1032], "12": [3362, 2064], "13": [6723, 4128], "14": [13446, 8256], "15": [26892, 16512], "16": [53784, 33023], "17": [107567, 66045]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "381da3b17257ba8c2ca165e843d8dc38"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMR-01Z-00-DX1.7BFF4F04-9B60-41AA-9977-AF63547748AB.svs/features.npy b/features/TCGA-XF-AAMR-01Z-00-DX1.7BFF4F04-9B60-41AA-9977-AF63547748AB.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..10d09849792aa48860d3d2c0a13b1d0752236610 --- /dev/null +++ b/features/TCGA-XF-AAMR-01Z-00-DX1.7BFF4F04-9B60-41AA-9977-AF63547748AB.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4c6d94cafa62e47a0f59b50a103a83f98c864c5299aa94a224cffd99250bd61f +size 156015596 diff --git a/features/TCGA-XF-AAMR-01Z-00-DX1.7BFF4F04-9B60-41AA-9977-AF63547748AB.svs/mask.npy b/features/TCGA-XF-AAMR-01Z-00-DX1.7BFF4F04-9B60-41AA-9977-AF63547748AB.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..175d62885af449f4717bd9207f1a9f67ddbbfc76 --- /dev/null +++ b/features/TCGA-XF-AAMR-01Z-00-DX1.7BFF4F04-9B60-41AA-9977-AF63547748AB.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:70f576ad790eab37f81aeab01a0562e64882940c0d51502cf4da7c00010e52ed +size 134373160 diff --git a/features/TCGA-XF-AAMR-01Z-00-DX1.7BFF4F04-9B60-41AA-9977-AF63547748AB.svs/metadata.json b/features/TCGA-XF-AAMR-01Z-00-DX1.7BFF4F04-9B60-41AA-9977-AF63547748AB.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4f1f3eef2f803ac5e57fefa35c05fe62006fd0aa --- /dev/null +++ b/features/TCGA-XF-AAMR-01Z-00-DX1.7BFF4F04-9B60-41AA-9977-AF63547748AB.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19017, "total_number_of_tiles": 19017, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [117527, 73168], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 9], "5": [29, 18], "6": [58, 36], "7": [115, 72], "8": [230, 143], "9": [460, 286], "10": [919, 572], "11": [1837, 1144], "12": [3673, 2287], "13": [7346, 4573], "14": [14691, 9146], "15": [29382, 18292], "16": [58764, 36584], "17": [117527, 73168]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2817c94846f8bcdf3d1e07fea030d015"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMT-01Z-00-DX1.F5A3715A-55DC-46C1-A6F9-4B1BFE1176EC.svs/features.npy b/features/TCGA-XF-AAMT-01Z-00-DX1.F5A3715A-55DC-46C1-A6F9-4B1BFE1176EC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f1f30417febdf0b769d7f6813f74442c83a10ef4 --- /dev/null +++ b/features/TCGA-XF-AAMT-01Z-00-DX1.F5A3715A-55DC-46C1-A6F9-4B1BFE1176EC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b2a79af48095603d87273ba95b2f39ecb12af8d47f8edbecbae95eea92f01d2f +size 259123468 diff --git a/features/TCGA-XF-AAMT-01Z-00-DX1.F5A3715A-55DC-46C1-A6F9-4B1BFE1176EC.svs/mask.npy b/features/TCGA-XF-AAMT-01Z-00-DX1.F5A3715A-55DC-46C1-A6F9-4B1BFE1176EC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d1778685745a80012d9203d4bcae30f39adb5446 --- /dev/null +++ b/features/TCGA-XF-AAMT-01Z-00-DX1.F5A3715A-55DC-46C1-A6F9-4B1BFE1176EC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:70a36b55b494fb64cba3ab56a509e3b2918c1302c628025d91262476effc1753 +size 158134144 diff --git a/features/TCGA-XF-AAMT-01Z-00-DX1.F5A3715A-55DC-46C1-A6F9-4B1BFE1176EC.svs/metadata.json b/features/TCGA-XF-AAMT-01Z-00-DX1.F5A3715A-55DC-46C1-A6F9-4B1BFE1176EC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..50cc653605c56ecfed389eb8ff708f5a1511d8eb --- /dev/null +++ b/features/TCGA-XF-AAMT-01Z-00-DX1.F5A3715A-55DC-46C1-A6F9-4B1BFE1176EC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 31585, "total_number_of_tiles": 31585, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109559, 92362], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 12], "5": [27, 23], "6": [54, 46], "7": [107, 91], "8": [214, 181], "9": [428, 361], "10": [856, 722], "11": [1712, 1444], "12": [3424, 2887], "13": [6848, 5773], "14": [13695, 11546], "15": [27390, 23091], "16": [54780, 46181], "17": [109559, 92362]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "486060f4247e573f910749dac79c7aac"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.svs/features.npy b/features/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..8fa80a2c20f9413c85deb9ef7381f2357f6e22e6 --- /dev/null +++ b/features/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b8dc936b98eb26e41501c9ba9ddceefcd1f1cba9cb64f3693d99a4aa6e423a86 +size 136580320 diff --git a/features/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.svs/mask.npy b/features/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..ef2a1a21e0dcdd5617b147e25b30e3b839957978 --- /dev/null +++ b/features/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ea2526dd336506fd767b683d06c4de2db1d2163c3501b03b8cbd15666c621d88 +size 165014420 diff --git a/features/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.svs/metadata.json b/features/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4e329f6479b660e4e653b7ef5cb3e3eb2e79b8b0 --- /dev/null +++ b/features/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16648, "total_number_of_tiles": 16648, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115535, 91402], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [29, 23], "6": [57, 45], "7": [113, 90], "8": [226, 179], "9": [452, 358], "10": [903, 715], "11": [1806, 1429], "12": [3611, 2857], "13": [7221, 5713], "14": [14442, 11426], "15": [28884, 22851], "16": [57768, 45701], "17": [115535, 91402]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "95bdeb294f6936b7141ecd34cfc3ed08"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMX-01Z-00-DX1.453214DD-54FF-42DF-8BD6-E6BC4B376EFF.svs/features.npy b/features/TCGA-XF-AAMX-01Z-00-DX1.453214DD-54FF-42DF-8BD6-E6BC4B376EFF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..e102493aec396823399da54c3951665e31a97e59 --- /dev/null +++ b/features/TCGA-XF-AAMX-01Z-00-DX1.453214DD-54FF-42DF-8BD6-E6BC4B376EFF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:05e4892da7eeefa475eba8706f243e4ab737507154e9fb7db3e641dd44beb693 +size 157418480 diff --git a/features/TCGA-XF-AAMX-01Z-00-DX1.453214DD-54FF-42DF-8BD6-E6BC4B376EFF.svs/mask.npy b/features/TCGA-XF-AAMX-01Z-00-DX1.453214DD-54FF-42DF-8BD6-E6BC4B376EFF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f619f85aee37074c6b32d1c4e39c74eebf2aac2f --- /dev/null +++ b/features/TCGA-XF-AAMX-01Z-00-DX1.453214DD-54FF-42DF-8BD6-E6BC4B376EFF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:da46d9c68708338608775bf3600daf235fd28b794f12d9bc2dc79eafac410158 +size 117700436 diff --git a/features/TCGA-XF-AAMX-01Z-00-DX1.453214DD-54FF-42DF-8BD6-E6BC4B376EFF.svs/metadata.json b/features/TCGA-XF-AAMX-01Z-00-DX1.453214DD-54FF-42DF-8BD6-E6BC4B376EFF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..08809da2a0b899934ff0cded6298023f21bc4bf4 --- /dev/null +++ b/features/TCGA-XF-AAMX-01Z-00-DX1.453214DD-54FF-42DF-8BD6-E6BC4B376EFF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19188, "total_number_of_tiles": 19188, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [131471, 57295], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [5, 2], "4": [9, 4], "5": [17, 7], "6": [33, 14], "7": [65, 28], "8": [129, 56], "9": [257, 112], "10": [514, 224], "11": [1028, 448], "12": [2055, 896], "13": [4109, 1791], "14": [8217, 3581], "15": [16434, 7162], "16": [32868, 14324], "17": [65736, 28648], "18": [131471, 57295]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bb7669891275f6102d7985b13bdfeb72e082ab20371e87a2b32cfc671ef8911f"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMY-01Z-00-DX1.44D91D18-357D-4FB2-A7CA-38792E3CB839.svs/features.npy b/features/TCGA-XF-AAMY-01Z-00-DX1.44D91D18-357D-4FB2-A7CA-38792E3CB839.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..472ec62c481f7f0e3ad674f8d1443582007a9fb3 --- /dev/null +++ b/features/TCGA-XF-AAMY-01Z-00-DX1.44D91D18-357D-4FB2-A7CA-38792E3CB839.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:223140aed5f587ab291caa8e7b0e14161c27fd201ae4f9466841fa358465ed85 +size 174179252 diff --git a/features/TCGA-XF-AAMY-01Z-00-DX1.44D91D18-357D-4FB2-A7CA-38792E3CB839.svs/mask.npy b/features/TCGA-XF-AAMY-01Z-00-DX1.44D91D18-357D-4FB2-A7CA-38792E3CB839.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..edcbd97e5fb018103a25e3cf07a20e17b8f99d5f --- /dev/null +++ b/features/TCGA-XF-AAMY-01Z-00-DX1.44D91D18-357D-4FB2-A7CA-38792E3CB839.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fef11b81ec3f179a482145396adbc1a61b075e3bec0088042692eb68b299ec3f +size 142842464 diff --git a/features/TCGA-XF-AAMY-01Z-00-DX1.44D91D18-357D-4FB2-A7CA-38792E3CB839.svs/metadata.json b/features/TCGA-XF-AAMY-01Z-00-DX1.44D91D18-357D-4FB2-A7CA-38792E3CB839.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..405f15ea89d91433dfaf51646ebda0d6050ab0fe --- /dev/null +++ b/features/TCGA-XF-AAMY-01Z-00-DX1.44D91D18-357D-4FB2-A7CA-38792E3CB839.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 21231, "total_number_of_tiles": 21231, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [103583, 88247], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 22], "6": [51, 44], "7": [102, 87], "8": [203, 173], "9": [405, 345], "10": [810, 690], "11": [1619, 1379], "12": [3237, 2758], "13": [6474, 5516], "14": [12948, 11031], "15": [25896, 22062], "16": [51792, 44124], "17": [103583, 88247]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "6cd13a177557afa1c7cd3c6d256f376e"} \ No newline at end of file diff --git a/features/TCGA-XF-AAMZ-01Z-00-DX1.05AB4629-F59E-4877-B7F3-CF4336557EE0.svs/features.npy b/features/TCGA-XF-AAMZ-01Z-00-DX1.05AB4629-F59E-4877-B7F3-CF4336557EE0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..259ba7c5a9c371450f5e1ad4a215b62645d47ed8 --- /dev/null +++ b/features/TCGA-XF-AAMZ-01Z-00-DX1.05AB4629-F59E-4877-B7F3-CF4336557EE0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:997850272253103868465c67179f96c8129e64c8437fa764a4ef8fef497497d7 +size 118457684 diff --git a/features/TCGA-XF-AAMZ-01Z-00-DX1.05AB4629-F59E-4877-B7F3-CF4336557EE0.svs/mask.npy b/features/TCGA-XF-AAMZ-01Z-00-DX1.05AB4629-F59E-4877-B7F3-CF4336557EE0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8e6fd8c8cc490dc96acfa0cd61712844c3952869 --- /dev/null +++ b/features/TCGA-XF-AAMZ-01Z-00-DX1.05AB4629-F59E-4877-B7F3-CF4336557EE0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:784fe71bc6e71dedc95243b87caf23596a68a64b98d292d4a938f9424e622dad +size 102443004 diff --git a/features/TCGA-XF-AAMZ-01Z-00-DX1.05AB4629-F59E-4877-B7F3-CF4336557EE0.svs/metadata.json b/features/TCGA-XF-AAMZ-01Z-00-DX1.05AB4629-F59E-4877-B7F3-CF4336557EE0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..52ea8079708d542a08673f5e613a16c0168fa02e --- /dev/null +++ b/features/TCGA-XF-AAMZ-01Z-00-DX1.05AB4629-F59E-4877-B7F3-CF4336557EE0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14439, "total_number_of_tiles": 14439, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [105575, 62084], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [4, 2], "3": [7, 4], "4": [13, 8], "5": [26, 16], "6": [52, 31], "7": [104, 61], "8": [207, 122], "9": [413, 243], "10": [825, 486], "11": [1650, 971], "12": [3300, 1941], "13": [6599, 3881], "14": [13197, 7761], "15": [26394, 15521], "16": [52788, 31042], "17": [105575, 62084]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a8e5ae7ad11c9b9e4f002bca741090ab"} \ No newline at end of file diff --git a/features/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.svs/features.npy b/features/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..262d55eeb0c7e3b5f4f9aab6a7269450baff727c --- /dev/null +++ b/features/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a70a720228d0da5f9a18615861211ae40b20c5fb532bca2c312a0406701fb12a +size 149435988 diff --git a/features/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.svs/mask.npy b/features/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..438ac93bfef5d81bdc52dbd1c42cb899da26640e --- /dev/null +++ b/features/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ccfbba15a0873311792f4cba64d4cccd8662c53b2ce6c64a5da810cd9af1ec5d +size 182199404 diff --git a/features/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.svs/metadata.json b/features/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d6c521b0113485ffdba18725a617cd8387038fb1 --- /dev/null +++ b/features/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18215, "total_number_of_tiles": 18215, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 94406], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 24], "6": [61, 47], "7": [121, 93], "8": [242, 185], "9": [483, 369], "10": [965, 738], "11": [1930, 1476], "12": [3860, 2951], "13": [7719, 5901], "14": [15438, 11801], "15": [30876, 23602], "16": [61752, 47203], "17": [123503, 94406]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7944926e3b05d20dde3841f961f77b61"} \ No newline at end of file diff --git a/features/TCGA-XF-AAN1-01Z-00-DX1.F6F0E65A-0D01-4C00-AEAC-359D52C802BF.svs/features.npy b/features/TCGA-XF-AAN1-01Z-00-DX1.F6F0E65A-0D01-4C00-AEAC-359D52C802BF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..04d07dfacaa21bcf3d6a1cd670d9a694a0b93c99 --- /dev/null +++ b/features/TCGA-XF-AAN1-01Z-00-DX1.F6F0E65A-0D01-4C00-AEAC-359D52C802BF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:325540bc1d3377bf156b5b9d90baebc4b369aa00427c0b38771ab2f0cf777d62 +size 167132016 diff --git a/features/TCGA-XF-AAN1-01Z-00-DX1.F6F0E65A-0D01-4C00-AEAC-359D52C802BF.svs/mask.npy b/features/TCGA-XF-AAN1-01Z-00-DX1.F6F0E65A-0D01-4C00-AEAC-359D52C802BF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d75d338110fc24903f811d9ab19a664bc643ca86 --- /dev/null +++ b/features/TCGA-XF-AAN1-01Z-00-DX1.F6F0E65A-0D01-4C00-AEAC-359D52C802BF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b65712c5a823655daa107d2c09605597b28d70789d107e19460764dd1eb257f +size 144706240 diff --git a/features/TCGA-XF-AAN1-01Z-00-DX1.F6F0E65A-0D01-4C00-AEAC-359D52C802BF.svs/metadata.json b/features/TCGA-XF-AAN1-01Z-00-DX1.F6F0E65A-0D01-4C00-AEAC-359D52C802BF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f97b41439f514d92256d7f482edb94a896010c9b --- /dev/null +++ b/features/TCGA-XF-AAN1-01Z-00-DX1.F6F0E65A-0D01-4C00-AEAC-359D52C802BF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20372, "total_number_of_tiles": 20372, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 73791], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [31, 19], "6": [62, 37], "7": [123, 73], "8": [246, 145], "9": [491, 289], "10": [981, 577], "11": [1961, 1153], "12": [3922, 2306], "13": [7844, 4612], "14": [15687, 9224], "15": [31374, 18448], "16": [62748, 36896], "17": [125495, 73791]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "1174c48ba97d4df9d5812d855f6b9709"} \ No newline at end of file diff --git a/features/TCGA-XF-AAN2-01Z-00-DX1.EB523A3A-0DE0-4FFC-9FE7-CF4FB2FB36CF.svs/features.npy b/features/TCGA-XF-AAN2-01Z-00-DX1.EB523A3A-0DE0-4FFC-9FE7-CF4FB2FB36CF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..85145647f68e51238b2d252e5edf1a8f77e6529c --- /dev/null +++ b/features/TCGA-XF-AAN2-01Z-00-DX1.EB523A3A-0DE0-4FFC-9FE7-CF4FB2FB36CF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8e88d8f627dacb759186af73f456bb1c57a58e0f04257d7c2879bd5552fd2026 +size 113543488 diff --git a/features/TCGA-XF-AAN2-01Z-00-DX1.EB523A3A-0DE0-4FFC-9FE7-CF4FB2FB36CF.svs/mask.npy b/features/TCGA-XF-AAN2-01Z-00-DX1.EB523A3A-0DE0-4FFC-9FE7-CF4FB2FB36CF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..44eb7d8c26c5854ca83a93039bb8251a1417ee95 --- /dev/null +++ b/features/TCGA-XF-AAN2-01Z-00-DX1.EB523A3A-0DE0-4FFC-9FE7-CF4FB2FB36CF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c86a83c661502310ba2a023e7f5543bfe6a316e01e6402ddea8d56064efd026f +size 178260224 diff --git a/features/TCGA-XF-AAN2-01Z-00-DX1.EB523A3A-0DE0-4FFC-9FE7-CF4FB2FB36CF.svs/metadata.json b/features/TCGA-XF-AAN2-01Z-00-DX1.EB523A3A-0DE0-4FFC-9FE7-CF4FB2FB36CF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..643e40f9d34a13078f0afd1e9672e1b4d6293f76 --- /dev/null +++ b/features/TCGA-XF-AAN2-01Z-00-DX1.EB523A3A-0DE0-4FFC-9FE7-CF4FB2FB36CF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 13840, "total_number_of_tiles": 13840, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [127487, 89486], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [32, 22], "6": [63, 44], "7": [125, 88], "8": [249, 175], "9": [498, 350], "10": [996, 700], "11": [1992, 1399], "12": [3984, 2797], "13": [7968, 5593], "14": [15936, 11186], "15": [31872, 22372], "16": [63744, 44743], "17": [127487, 89486]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e94bf8e9cf2e5b1ce55850757ed3f504"} \ No newline at end of file diff --git a/features/TCGA-XF-AAN3-01Z-00-DX1.2F004F0A-57C1-42CA-A07C-CE0FE8F876D5.svs/features.npy b/features/TCGA-XF-AAN3-01Z-00-DX1.2F004F0A-57C1-42CA-A07C-CE0FE8F876D5.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..993d37754000008a76c07ab64deb71e78eadab76 --- /dev/null +++ b/features/TCGA-XF-AAN3-01Z-00-DX1.2F004F0A-57C1-42CA-A07C-CE0FE8F876D5.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:99f0cb5cba2d4b6b9e77841778878379d7b3f99139038187adc1e2c11fc954f6 +size 125127536 diff --git a/features/TCGA-XF-AAN3-01Z-00-DX1.2F004F0A-57C1-42CA-A07C-CE0FE8F876D5.svs/mask.npy b/features/TCGA-XF-AAN3-01Z-00-DX1.2F004F0A-57C1-42CA-A07C-CE0FE8F876D5.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4f96e841f5b3bbf2f3d7c33843e45f384145a83b --- /dev/null +++ b/features/TCGA-XF-AAN3-01Z-00-DX1.2F004F0A-57C1-42CA-A07C-CE0FE8F876D5.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d10e1628719448e700dbaff47eafc7684e07ae387d83211c572851f0102213f3 +size 130211192 diff --git a/features/TCGA-XF-AAN3-01Z-00-DX1.2F004F0A-57C1-42CA-A07C-CE0FE8F876D5.svs/metadata.json b/features/TCGA-XF-AAN3-01Z-00-DX1.2F004F0A-57C1-42CA-A07C-CE0FE8F876D5.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..703725d1961aee22b2edfe95ac28b89ef06f0c52 --- /dev/null +++ b/features/TCGA-XF-AAN3-01Z-00-DX1.2F004F0A-57C1-42CA-A07C-CE0FE8F876D5.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15252, "total_number_of_tiles": 15252, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [107567, 77459], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 19], "6": [53, 38], "7": [106, 76], "8": [211, 152], "9": [421, 303], "10": [841, 606], "11": [1681, 1211], "12": [3362, 2421], "13": [6723, 4842], "14": [13446, 9683], "15": [26892, 19365], "16": [53784, 38730], "17": [107567, 77459]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f28275b2aa8d72292a198013ce919b9c"} \ No newline at end of file diff --git a/features/TCGA-XF-AAN4-01Z-00-DX1.F9F1800B-9945-4695-B851-A4585E9D56D6.svs/features.npy b/features/TCGA-XF-AAN4-01Z-00-DX1.F9F1800B-9945-4695-B851-A4585E9D56D6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..de2c03b731d08e73df90f2a8b0bcdbef06ee14cc --- /dev/null +++ b/features/TCGA-XF-AAN4-01Z-00-DX1.F9F1800B-9945-4695-B851-A4585E9D56D6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b28f1e00d77559d27be3468e5407f8df958f2354ee7b367bce6b5bf286d2880c +size 214838276 diff --git a/features/TCGA-XF-AAN4-01Z-00-DX1.F9F1800B-9945-4695-B851-A4585E9D56D6.svs/mask.npy b/features/TCGA-XF-AAN4-01Z-00-DX1.F9F1800B-9945-4695-B851-A4585E9D56D6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..85f4d0ca2a82549bd5339d4de14340652da0ce11 --- /dev/null +++ b/features/TCGA-XF-AAN4-01Z-00-DX1.F9F1800B-9945-4695-B851-A4585E9D56D6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:39173eea0b162dcd4b3965a740ead33b88ab5c952f3f372a60ee37b691b67c67 +size 128016128 diff --git a/features/TCGA-XF-AAN4-01Z-00-DX1.F9F1800B-9945-4695-B851-A4585E9D56D6.svs/metadata.json b/features/TCGA-XF-AAN4-01Z-00-DX1.F9F1800B-9945-4695-B851-A4585E9D56D6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..72f35bfa637d7e0e0d117e113523b5721f9ee90b --- /dev/null +++ b/features/TCGA-XF-AAN4-01Z-00-DX1.F9F1800B-9945-4695-B851-A4585E9D56D6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26187, "total_number_of_tiles": 26187, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101591, 80638], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [25, 20], "6": [50, 40], "7": [100, 79], "8": [199, 158], "9": [397, 315], "10": [794, 630], "11": [1588, 1260], "12": [3175, 2520], "13": [6350, 5040], "14": [12699, 10080], "15": [25398, 20160], "16": [50796, 40319], "17": [101591, 80638]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7df54fae04126044338f699c6d8db733"} \ No newline at end of file diff --git a/features/TCGA-XF-AAN5-01Z-00-DX1.DACB5253-366B-40A2-AD52-376F26C103A6.svs/features.npy b/features/TCGA-XF-AAN5-01Z-00-DX1.DACB5253-366B-40A2-AD52-376F26C103A6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..af43f2503bd9233de8781e1e1c927b585a929310 --- /dev/null +++ b/features/TCGA-XF-AAN5-01Z-00-DX1.DACB5253-366B-40A2-AD52-376F26C103A6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2dd3d52cb3f9ec8832018c6353212a95a7b2d731b2ba9e1e54f1f779ed4f4433 +size 135735308 diff --git a/features/TCGA-XF-AAN5-01Z-00-DX1.DACB5253-366B-40A2-AD52-376F26C103A6.svs/mask.npy b/features/TCGA-XF-AAN5-01Z-00-DX1.DACB5253-366B-40A2-AD52-376F26C103A6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..463184e9c7b3f5e811b2e43323207240a193eecc --- /dev/null +++ b/features/TCGA-XF-AAN5-01Z-00-DX1.DACB5253-366B-40A2-AD52-376F26C103A6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c20db2178724b68dbaaa7e72df2210913e8b0704ff25a334cb333312366174eb +size 94223972 diff --git a/features/TCGA-XF-AAN5-01Z-00-DX1.DACB5253-366B-40A2-AD52-376F26C103A6.svs/metadata.json b/features/TCGA-XF-AAN5-01Z-00-DX1.DACB5253-366B-40A2-AD52-376F26C103A6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b50bbc2d01799c2063459c781d86f9ae1c6b05df --- /dev/null +++ b/features/TCGA-XF-AAN5-01Z-00-DX1.DACB5253-366B-40A2-AD52-376F26C103A6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16545, "total_number_of_tiles": 16545, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97607, 61775], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 4], "4": [12, 8], "5": [24, 16], "6": [48, 31], "7": [96, 61], "8": [191, 121], "9": [382, 242], "10": [763, 483], "11": [1526, 966], "12": [3051, 1931], "13": [6101, 3861], "14": [12201, 7722], "15": [24402, 15444], "16": [48804, 30888], "17": [97607, 61775]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "86f887afdbb25207ccae36217101224c"} \ No newline at end of file diff --git a/features/TCGA-XF-AAN7-01Z-00-DX1.B8EDF045-604C-48CB-8E54-A60564CAE2AD.svs/features.npy b/features/TCGA-XF-AAN7-01Z-00-DX1.B8EDF045-604C-48CB-8E54-A60564CAE2AD.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b3705ee539cf257ce0f79b11c5736b0212454927 --- /dev/null +++ b/features/TCGA-XF-AAN7-01Z-00-DX1.B8EDF045-604C-48CB-8E54-A60564CAE2AD.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fff866a6b2303b544bc24534a57bb5877f965d27666e6d43c24d685aceacb765 +size 155326460 diff --git a/features/TCGA-XF-AAN7-01Z-00-DX1.B8EDF045-604C-48CB-8E54-A60564CAE2AD.svs/mask.npy b/features/TCGA-XF-AAN7-01Z-00-DX1.B8EDF045-604C-48CB-8E54-A60564CAE2AD.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..65370ab32fc839a01069860d5ff218e354a554f5 --- /dev/null +++ b/features/TCGA-XF-AAN7-01Z-00-DX1.B8EDF045-604C-48CB-8E54-A60564CAE2AD.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:88a287b78853a5e9660166c29005b4afa6debd6d4b349f7b21c1249852a00058 +size 136420256 diff --git a/features/TCGA-XF-AAN7-01Z-00-DX1.B8EDF045-604C-48CB-8E54-A60564CAE2AD.svs/metadata.json b/features/TCGA-XF-AAN7-01Z-00-DX1.B8EDF045-604C-48CB-8E54-A60564CAE2AD.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a5588c03ce58ae6f3fba56bb4798f8b3dd0bd6f4 --- /dev/null +++ b/features/TCGA-XF-AAN7-01Z-00-DX1.B8EDF045-604C-48CB-8E54-A60564CAE2AD.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18933, "total_number_of_tiles": 18933, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [103583, 84282], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 11], "5": [26, 21], "6": [51, 42], "7": [102, 83], "8": [203, 165], "9": [405, 330], "10": [810, 659], "11": [1619, 1317], "12": [3237, 2634], "13": [6474, 5268], "14": [12948, 10536], "15": [25896, 21071], "16": [51792, 42141], "17": [103583, 84282]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e3c136291570de190edfff50038023ea"} \ No newline at end of file diff --git a/features/TCGA-XF-AAN8-01Z-00-DX1.2962EEBB-A4F1-4958-85C9-480B7CA769A8.svs/features.npy b/features/TCGA-XF-AAN8-01Z-00-DX1.2962EEBB-A4F1-4958-85C9-480B7CA769A8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d196a1ba928e902c3491658a6d6c931cc31b9310 --- /dev/null +++ b/features/TCGA-XF-AAN8-01Z-00-DX1.2962EEBB-A4F1-4958-85C9-480B7CA769A8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:64a932704229a7c86c49556b85fc6b764867fc274c23644895e6cf189b7c148b +size 118720212 diff --git a/features/TCGA-XF-AAN8-01Z-00-DX1.2962EEBB-A4F1-4958-85C9-480B7CA769A8.svs/mask.npy b/features/TCGA-XF-AAN8-01Z-00-DX1.2962EEBB-A4F1-4958-85C9-480B7CA769A8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c1f81ebf15d18176401e1e4a95e2a933768c68e3 --- /dev/null +++ b/features/TCGA-XF-AAN8-01Z-00-DX1.2962EEBB-A4F1-4958-85C9-480B7CA769A8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ebe57f181f6f2fca172051ff124682cf7be788f6d7725b50465723b008799b4b +size 95972928 diff --git a/features/TCGA-XF-AAN8-01Z-00-DX1.2962EEBB-A4F1-4958-85C9-480B7CA769A8.svs/metadata.json b/features/TCGA-XF-AAN8-01Z-00-DX1.2962EEBB-A4F1-4958-85C9-480B7CA769A8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..04af99f3bc3c4ca7d67fb3deb869a564c858cfd1 --- /dev/null +++ b/features/TCGA-XF-AAN8-01Z-00-DX1.2962EEBB-A4F1-4958-85C9-480B7CA769A8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 14471, "total_number_of_tiles": 14471, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [93623, 65586], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 5], "4": [12, 9], "5": [23, 17], "6": [46, 33], "7": [92, 65], "8": [183, 129], "9": [366, 257], "10": [732, 513], "11": [1463, 1025], "12": [2926, 2050], "13": [5852, 4100], "14": [11703, 8199], "15": [23406, 16397], "16": [46812, 32793], "17": [93623, 65586]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f17911e6cbb169fb87ad614460b8beadb7b6faddc6a4a6416e01a5729ed6a668"} \ No newline at end of file diff --git a/features/TCGA-YC-A89H-01Z-00-DX1.ACE5AFD4-274B-4579-9B0E-EDD8D9251A8C.svs/features.npy b/features/TCGA-YC-A89H-01Z-00-DX1.ACE5AFD4-274B-4579-9B0E-EDD8D9251A8C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..c47811059f3ea66b3c3425ec10752ff1bafa584b --- /dev/null +++ b/features/TCGA-YC-A89H-01Z-00-DX1.ACE5AFD4-274B-4579-9B0E-EDD8D9251A8C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9e7bf76da1d024e382cd7aebcdf4e9be84a46a55853173fb4069efcbbf22023a +size 163834008 diff --git a/features/TCGA-YC-A89H-01Z-00-DX1.ACE5AFD4-274B-4579-9B0E-EDD8D9251A8C.svs/mask.npy b/features/TCGA-YC-A89H-01Z-00-DX1.ACE5AFD4-274B-4579-9B0E-EDD8D9251A8C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c5049ad4a5ae093216fe789a59302b7bde46143c --- /dev/null +++ b/features/TCGA-YC-A89H-01Z-00-DX1.ACE5AFD4-274B-4579-9B0E-EDD8D9251A8C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:968b6ece7eeda9d66805eceb63e6e41894410a321c73d3b12b20cbccd61d6359 +size 176023208 diff --git a/features/TCGA-YC-A89H-01Z-00-DX1.ACE5AFD4-274B-4579-9B0E-EDD8D9251A8C.svs/metadata.json b/features/TCGA-YC-A89H-01Z-00-DX1.ACE5AFD4-274B-4579-9B0E-EDD8D9251A8C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8501c1ab3c4f7576618e6ef15b6a203245280276 --- /dev/null +++ b/features/TCGA-YC-A89H-01Z-00-DX1.ACE5AFD4-274B-4579-9B0E-EDD8D9251A8C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19970, "total_number_of_tiles": 19970, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119519, 94252], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 12], "5": [30, 24], "6": [59, 47], "7": [117, 93], "8": [234, 185], "9": [467, 369], "10": [934, 737], "11": [1868, 1473], "12": [3735, 2946], "13": [7470, 5891], "14": [14940, 11782], "15": [29880, 23563], "16": [59760, 47126], "17": [119519, 94252]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "762257c035a9e60aa97f0ff79eed5b85"} \ No newline at end of file diff --git a/features/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.svs/features.npy b/features/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b2e2bef0e80a59d614574fa4df027f8a2fe6ebef --- /dev/null +++ b/features/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2827502828b99bf18c075e5a796f746ef42edaf0ae2243d9d0991ef1382b9902 +size 151971024 diff --git a/features/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.svs/mask.npy b/features/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..4e659865a535676e49905e72d9d8a6eb2a28d669 --- /dev/null +++ b/features/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e2b1097801ec2746c7245d9308456d34b7ac0a47b4c799c92289921ea50087e9 +size 122224928 diff --git a/features/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.svs/metadata.json b/features/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9672d335b80e3381f1a0cb54a026fdec218bd3c9 --- /dev/null +++ b/features/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18524, "total_number_of_tiles": 18524, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101591, 76991], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 10], "5": [25, 19], "6": [50, 38], "7": [100, 76], "8": [199, 151], "9": [397, 301], "10": [794, 602], "11": [1588, 1203], "12": [3175, 2406], "13": [6350, 4812], "14": [12699, 9624], "15": [25398, 19248], "16": [50796, 38496], "17": [101591, 76991]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2954be6f87e5a02752374559c30e336a"} \ No newline at end of file diff --git a/features/TCGA-YC-A9TC-01Z-00-DX1.D7C1A85C-C39C-436F-A22A-2A09558CCF18.svs/features.npy b/features/TCGA-YC-A9TC-01Z-00-DX1.D7C1A85C-C39C-436F-A22A-2A09558CCF18.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..feecc7b4751cad4a761fc2ad9c525c1fe9a6d4e8 --- /dev/null +++ b/features/TCGA-YC-A9TC-01Z-00-DX1.D7C1A85C-C39C-436F-A22A-2A09558CCF18.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dfcffcef2b5a7e775db8b04b57dd0d05264f668a39e36c2ffa4b393e808c2ec3 +size 98948572 diff --git a/features/TCGA-YC-A9TC-01Z-00-DX1.D7C1A85C-C39C-436F-A22A-2A09558CCF18.svs/mask.npy b/features/TCGA-YC-A9TC-01Z-00-DX1.D7C1A85C-C39C-436F-A22A-2A09558CCF18.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d819ce03e9fc3e9ee32547f333f7354dd57d58b0 --- /dev/null +++ b/features/TCGA-YC-A9TC-01Z-00-DX1.D7C1A85C-C39C-436F-A22A-2A09558CCF18.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5d46be4f6158154582691a3121d22cd1b17e7a3bfdac5e6ccbc21b3a6c8710b2 +size 173924636 diff --git a/features/TCGA-YC-A9TC-01Z-00-DX1.D7C1A85C-C39C-436F-A22A-2A09558CCF18.svs/metadata.json b/features/TCGA-YC-A9TC-01Z-00-DX1.D7C1A85C-C39C-436F-A22A-2A09558CCF18.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b2c5dbf530ce4119607a4f94189dcaa49b50009d --- /dev/null +++ b/features/TCGA-YC-A9TC-01Z-00-DX1.D7C1A85C-C39C-436F-A22A-2A09558CCF18.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12061, "total_number_of_tiles": 12061, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 90125], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [61, 45], "7": [121, 89], "8": [242, 177], "9": [483, 353], "10": [965, 705], "11": [1930, 1409], "12": [3860, 2817], "13": [7719, 5633], "14": [15438, 11266], "15": [30876, 22532], "16": [61752, 45063], "17": [123503, 90125]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "06b53d4145ec127b71da6bc197b812d2"} \ No newline at end of file diff --git a/features/TCGA-YC-A9TC-01Z-00-DX2.F74F61C0-CB9F-4E6E-BDA7-D206ECBBDEFC.svs/features.npy b/features/TCGA-YC-A9TC-01Z-00-DX2.F74F61C0-CB9F-4E6E-BDA7-D206ECBBDEFC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2f3952f11d20ac30bf12da0499cdfa11ae972598 --- /dev/null +++ b/features/TCGA-YC-A9TC-01Z-00-DX2.F74F61C0-CB9F-4E6E-BDA7-D206ECBBDEFC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5d189762afa47eb438c4d6c5ce544f68267b84fa086b0f427ca7227be8329325 +size 102131724 diff --git a/features/TCGA-YC-A9TC-01Z-00-DX2.F74F61C0-CB9F-4E6E-BDA7-D206ECBBDEFC.svs/mask.npy b/features/TCGA-YC-A9TC-01Z-00-DX2.F74F61C0-CB9F-4E6E-BDA7-D206ECBBDEFC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..06b8764e50bff5cf3316d0d78bccf9cf7088bd20 --- /dev/null +++ b/features/TCGA-YC-A9TC-01Z-00-DX2.F74F61C0-CB9F-4E6E-BDA7-D206ECBBDEFC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fb511b944ae5286020757a2cf11e54bbaff27d82ea9a3d15d7dcf72054f2fc05 +size 176113616 diff --git a/features/TCGA-YC-A9TC-01Z-00-DX2.F74F61C0-CB9F-4E6E-BDA7-D206ECBBDEFC.svs/metadata.json b/features/TCGA-YC-A9TC-01Z-00-DX2.F74F61C0-CB9F-4E6E-BDA7-D206ECBBDEFC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6ef85ed4c3901e8e29df21074a69762c1a74d4b3 --- /dev/null +++ b/features/TCGA-YC-A9TC-01Z-00-DX2.F74F61C0-CB9F-4E6E-BDA7-D206ECBBDEFC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12449, "total_number_of_tiles": 12449, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 89805], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 11], "5": [31, 22], "6": [62, 44], "7": [123, 88], "8": [246, 176], "9": [491, 351], "10": [981, 702], "11": [1961, 1404], "12": [3922, 2807], "13": [7844, 5613], "14": [15687, 11226], "15": [31374, 22452], "16": [62748, 44903], "17": [125495, 89805]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "3aeba918c6a65af0ca7d52eaa9fe848e"} \ No newline at end of file diff --git a/features/TCGA-YF-AA3L-01Z-00-DX1.56C211C1-20C7-4000-9C39-F76919ADA592.svs/features.npy b/features/TCGA-YF-AA3L-01Z-00-DX1.56C211C1-20C7-4000-9C39-F76919ADA592.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b0e1adc5966a231e72db2019694baedb497075db --- /dev/null +++ b/features/TCGA-YF-AA3L-01Z-00-DX1.56C211C1-20C7-4000-9C39-F76919ADA592.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9345379cad974c5785b50b49c0a92fd986e24bd52fabc7418018a7b3ce551074 +size 151314704 diff --git a/features/TCGA-YF-AA3L-01Z-00-DX1.56C211C1-20C7-4000-9C39-F76919ADA592.svs/mask.npy b/features/TCGA-YF-AA3L-01Z-00-DX1.56C211C1-20C7-4000-9C39-F76919ADA592.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e47fc6dfb3d77bfce51b6d9c8cc703584bea76b6 --- /dev/null +++ b/features/TCGA-YF-AA3L-01Z-00-DX1.56C211C1-20C7-4000-9C39-F76919ADA592.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3abccb81b782537b6a384d1721db8d1bd5ee39cd5026207a7e5a554e34e2b18e +size 156514232 diff --git a/features/TCGA-YF-AA3L-01Z-00-DX1.56C211C1-20C7-4000-9C39-F76919ADA592.svs/metadata.json b/features/TCGA-YF-AA3L-01Z-00-DX1.56C211C1-20C7-4000-9C39-F76919ADA592.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c1fa58e661d116821b415ffad1c568276e5ed621 --- /dev/null +++ b/features/TCGA-YF-AA3L-01Z-00-DX1.56C211C1-20C7-4000-9C39-F76919ADA592.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 18444, "total_number_of_tiles": 18444, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [115868, 86443], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [29, 22], "6": [57, 43], "7": [114, 85], "8": [227, 169], "9": [453, 338], "10": [906, 676], "11": [1811, 1351], "12": [3621, 2702], "13": [7242, 5403], "14": [14484, 10806], "15": [28967, 21611], "16": [57934, 43222], "17": [115868, 86443]}, "level_mpp_mapping": {"0": 32571.392, "1": 16285.696, "2": 8142.848, "3": 4071.424, "4": 2035.712, "5": 1017.856, "6": 508.928, "7": 254.464, "8": 127.232, "9": 63.616, "10": 31.808, "11": 15.904, "12": 7.952, "13": 3.976, "14": 1.988, "15": 0.994, "16": 0.497, "17": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "59c290786b4d915f0676c2084621109e"} \ No newline at end of file diff --git a/features/TCGA-YF-AA3M-01Z-00-DX1.28587CDB-1FDF-4FD0-B809-86C7EA64562A.svs/features.npy b/features/TCGA-YF-AA3M-01Z-00-DX1.28587CDB-1FDF-4FD0-B809-86C7EA64562A.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a551241a7176e3a02482f44c59260d1b1af49aa3 --- /dev/null +++ b/features/TCGA-YF-AA3M-01Z-00-DX1.28587CDB-1FDF-4FD0-B809-86C7EA64562A.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fb4d1fb1e42de9aac3698e242e84232dbcfda36132ca50a8bbf308aec6b8b72b +size 319997148 diff --git a/features/TCGA-YF-AA3M-01Z-00-DX1.28587CDB-1FDF-4FD0-B809-86C7EA64562A.svs/mask.npy b/features/TCGA-YF-AA3M-01Z-00-DX1.28587CDB-1FDF-4FD0-B809-86C7EA64562A.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..2582d9aa7b8780ad6908ac9e619558730e8716f3 --- /dev/null +++ b/features/TCGA-YF-AA3M-01Z-00-DX1.28587CDB-1FDF-4FD0-B809-86C7EA64562A.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e08abd1dc194f8aa3eb698cf892759be83d6e68abace820b8424f537fbfaa511 +size 237043940 diff --git a/features/TCGA-YF-AA3M-01Z-00-DX1.28587CDB-1FDF-4FD0-B809-86C7EA64562A.svs/metadata.json b/features/TCGA-YF-AA3M-01Z-00-DX1.28587CDB-1FDF-4FD0-B809-86C7EA64562A.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ec60aef8b0ee71d3def426cfbb4c4a1dea8736ad --- /dev/null +++ b/features/TCGA-YF-AA3M-01Z-00-DX1.28587CDB-1FDF-4FD0-B809-86C7EA64562A.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 39005, "total_number_of_tiles": 39005, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [176196, 86093], "tile_mpp": 0.497, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 3], "4": [11, 6], "5": [22, 11], "6": [44, 22], "7": [87, 43], "8": [173, 85], "9": [345, 169], "10": [689, 337], "11": [1377, 673], "12": [2754, 1346], "13": [5507, 2691], "14": [11013, 5381], "15": [22025, 10762], "16": [44049, 21524], "17": [88098, 43047], "18": [176196, 86093]}, "level_mpp_mapping": {"0": 65142.784, "1": 32571.392, "2": 16285.696, "3": 8142.848, "4": 4071.424, "5": 2035.712, "6": 1017.856, "7": 508.928, "8": 254.464, "9": 127.232, "10": 63.616, "11": 31.808, "12": 15.904, "13": 7.952, "14": 3.976, "15": 1.988, "16": 0.994, "17": 0.497, "18": 0.2485}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "9275b26a5d484deefd53a8c872d42182b6f4d0debab4b00883934b3447775e03"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9R0-01Z-00-DX1.B9FD30D2-807E-49F7-A9E0-C58226EDEF13.svs/features.npy b/features/TCGA-ZF-A9R0-01Z-00-DX1.B9FD30D2-807E-49F7-A9E0-C58226EDEF13.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..be3ecebc2394a653bad34eb005283a2dfc39cbd5 --- /dev/null +++ b/features/TCGA-ZF-A9R0-01Z-00-DX1.B9FD30D2-807E-49F7-A9E0-C58226EDEF13.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:42ade183b8a8ac97636b4c31b052c201c5e71a72336d89aea6129788156e6480 +size 220736952 diff --git a/features/TCGA-ZF-A9R0-01Z-00-DX1.B9FD30D2-807E-49F7-A9E0-C58226EDEF13.svs/mask.npy b/features/TCGA-ZF-A9R0-01Z-00-DX1.B9FD30D2-807E-49F7-A9E0-C58226EDEF13.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..a59043950916d8804f40a0908ac128c8cde5aacf --- /dev/null +++ b/features/TCGA-ZF-A9R0-01Z-00-DX1.B9FD30D2-807E-49F7-A9E0-C58226EDEF13.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ff57d58db4d03c7ac3de0da08d3a46e30d13c70c3d5135a8251888f50bce6571 +size 150793088 diff --git a/features/TCGA-ZF-A9R0-01Z-00-DX1.B9FD30D2-807E-49F7-A9E0-C58226EDEF13.svs/metadata.json b/features/TCGA-ZF-A9R0-01Z-00-DX1.B9FD30D2-807E-49F7-A9E0-C58226EDEF13.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cd3e7ebf22973903f13c25a7df239a7c83c2dbee --- /dev/null +++ b/features/TCGA-ZF-A9R0-01Z-00-DX1.B9FD30D2-807E-49F7-A9E0-C58226EDEF13.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26906, "total_number_of_tiles": 26906, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109559, 88079], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 22], "6": [54, 44], "7": [107, 87], "8": [214, 173], "9": [428, 345], "10": [856, 689], "11": [1712, 1377], "12": [3424, 2753], "13": [6848, 5505], "14": [13695, 11010], "15": [27390, 22020], "16": [54780, 44040], "17": [109559, 88079]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "348bc777f8597cca0a6af9a011685765"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.svs/features.npy b/features/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..cdebe38a4b0ae6d42848f3b44eaefd49504e7fff --- /dev/null +++ b/features/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:689290add53490e542f58037f68571affef0244c5ab49017cb93ec042d54917a +size 106635720 diff --git a/features/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.svs/mask.npy b/features/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9a023e7431f1b97406f98022f4b68439fdd4352b --- /dev/null +++ b/features/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:47ddc78b581655112265da86c6b0ba877f2402dcdb1edfb96c48b94394f8c029 +size 147012992 diff --git a/features/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.svs/metadata.json b/features/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..023d221122d24ed312aba0d54db9efe0b046532e --- /dev/null +++ b/features/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12998, "total_number_of_tiles": 12998, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109559, 85860], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 21], "6": [54, 42], "7": [107, 84], "8": [214, 168], "9": [428, 336], "10": [856, 671], "11": [1712, 1342], "12": [3424, 2684], "13": [6848, 5367], "14": [13695, 10733], "15": [27390, 21465], "16": [54780, 42930], "17": [109559, 85860]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "83de5e6c2d4ffb07349ef0623f350945"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9R2-01Z-00-DX1.D5BC88BD-594B-4EAA-988E-2577E48FEE15.svs/features.npy b/features/TCGA-ZF-A9R2-01Z-00-DX1.D5BC88BD-594B-4EAA-988E-2577E48FEE15.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f3af905ce83fbf85d1095da397af430d6e6abdde --- /dev/null +++ b/features/TCGA-ZF-A9R2-01Z-00-DX1.D5BC88BD-594B-4EAA-988E-2577E48FEE15.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cad2a6d0d5cd0ace8bfa942d16ad51ae6bc96090e6b4a0fd399da191561b1bf8 +size 226848932 diff --git a/features/TCGA-ZF-A9R2-01Z-00-DX1.D5BC88BD-594B-4EAA-988E-2577E48FEE15.svs/mask.npy b/features/TCGA-ZF-A9R2-01Z-00-DX1.D5BC88BD-594B-4EAA-988E-2577E48FEE15.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..992ef6f6d3333a7ab77b19a556862ac4deb6da38 --- /dev/null +++ b/features/TCGA-ZF-A9R2-01Z-00-DX1.D5BC88BD-594B-4EAA-988E-2577E48FEE15.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c60df47e64686dd2613366fe120abca02123d1e46a5d1ea53b534c28b1c8e9c +size 177290120 diff --git a/features/TCGA-ZF-A9R2-01Z-00-DX1.D5BC88BD-594B-4EAA-988E-2577E48FEE15.svs/metadata.json b/features/TCGA-ZF-A9R2-01Z-00-DX1.D5BC88BD-594B-4EAA-988E-2577E48FEE15.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9610474ae6c0260a259f290b9071962658196872 --- /dev/null +++ b/features/TCGA-ZF-A9R2-01Z-00-DX1.D5BC88BD-594B-4EAA-988E-2577E48FEE15.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 27651, "total_number_of_tiles": 27651, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 91869], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 23], "6": [61, 45], "7": [121, 90], "8": [242, 180], "9": [483, 359], "10": [965, 718], "11": [1930, 1436], "12": [3860, 2871], "13": [7719, 5742], "14": [15438, 11484], "15": [30876, 22968], "16": [61752, 45935], "17": [123503, 91869]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "afbb11e9d0661e121945e8c5374f249e"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9R3-01Z-00-DX1.AF828281-A45C-47D1-9FE3-CE7B9E105914.svs/features.npy b/features/TCGA-ZF-A9R3-01Z-00-DX1.AF828281-A45C-47D1-9FE3-CE7B9E105914.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..d4f911ae7693d6737487a510050ad82621946a43 --- /dev/null +++ b/features/TCGA-ZF-A9R3-01Z-00-DX1.AF828281-A45C-47D1-9FE3-CE7B9E105914.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9ab260a2c56a706dc6c17555902e656aceb234a4bc3570d3b2e3ffdc4e1fb241 +size 228079532 diff --git a/features/TCGA-ZF-A9R3-01Z-00-DX1.AF828281-A45C-47D1-9FE3-CE7B9E105914.svs/mask.npy b/features/TCGA-ZF-A9R3-01Z-00-DX1.AF828281-A45C-47D1-9FE3-CE7B9E105914.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..30840f6e4f92ac1c1156ebd70cb432d25099fbd3 --- /dev/null +++ b/features/TCGA-ZF-A9R3-01Z-00-DX1.AF828281-A45C-47D1-9FE3-CE7B9E105914.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:12a9712f75164eebd93015d4294019b5e2d5af358cc0003ae7e4af561386c40e +size 238732248 diff --git a/features/TCGA-ZF-A9R3-01Z-00-DX1.AF828281-A45C-47D1-9FE3-CE7B9E105914.svs/metadata.json b/features/TCGA-ZF-A9R3-01Z-00-DX1.AF828281-A45C-47D1-9FE3-CE7B9E105914.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..86f6533432255ac5b17d4987ceb06ff5a927d8ba --- /dev/null +++ b/features/TCGA-ZF-A9R3-01Z-00-DX1.AF828281-A45C-47D1-9FE3-CE7B9E105914.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 27801, "total_number_of_tiles": 27801, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [161351, 94677], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [20, 12], "6": [40, 24], "7": [79, 47], "8": [158, 93], "9": [316, 185], "10": [631, 370], "11": [1261, 740], "12": [2522, 1480], "13": [5043, 2959], "14": [10085, 5918], "15": [20169, 11835], "16": [40338, 23670], "17": [80676, 47339], "18": [161351, 94677]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "090e19c7849f78accff5c372c7adc1b908ebe47c28d8a4672c4e8812baa264c7"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9R4-01Z-00-DX1.0A115B7F-FB7F-4D82-953F-62BF64C1245F.svs/features.npy b/features/TCGA-ZF-A9R4-01Z-00-DX1.0A115B7F-FB7F-4D82-953F-62BF64C1245F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2e075dd6a27d5b2fb2b759a9f984e1c5dee1f8e5 --- /dev/null +++ b/features/TCGA-ZF-A9R4-01Z-00-DX1.0A115B7F-FB7F-4D82-953F-62BF64C1245F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:97b1387d3bd810a113188d0e45795236833cbd863492af3cc8c8863caa3aead6 +size 186345784 diff --git a/features/TCGA-ZF-A9R4-01Z-00-DX1.0A115B7F-FB7F-4D82-953F-62BF64C1245F.svs/mask.npy b/features/TCGA-ZF-A9R4-01Z-00-DX1.0A115B7F-FB7F-4D82-953F-62BF64C1245F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..652d8f5c9aa417a53be7fe7afc3712b1de104d79 --- /dev/null +++ b/features/TCGA-ZF-A9R4-01Z-00-DX1.0A115B7F-FB7F-4D82-953F-62BF64C1245F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:27e88757fc4e2db567247b794e91e050e049464cfe4a47f9947cbf12adbd2eff +size 150418928 diff --git a/features/TCGA-ZF-A9R4-01Z-00-DX1.0A115B7F-FB7F-4D82-953F-62BF64C1245F.svs/metadata.json b/features/TCGA-ZF-A9R4-01Z-00-DX1.0A115B7F-FB7F-4D82-953F-62BF64C1245F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a9993951397e7cea49d9ff38385f364bd12e0e66 --- /dev/null +++ b/features/TCGA-ZF-A9R4-01Z-00-DX1.0A115B7F-FB7F-4D82-953F-62BF64C1245F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22714, "total_number_of_tiles": 22714, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101591, 94748], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [13, 12], "5": [25, 24], "6": [50, 47], "7": [100, 93], "8": [199, 186], "9": [397, 371], "10": [794, 741], "11": [1588, 1481], "12": [3175, 2961], "13": [6350, 5922], "14": [12699, 11844], "15": [25398, 23687], "16": [50796, 47374], "17": [101591, 94748]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "5a5ccb4e146e49c1c548ca76402b1106"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9R5-01Z-00-DX1.50B18159-9376-411A-B519-12BB50D06DFC.svs/features.npy b/features/TCGA-ZF-A9R5-01Z-00-DX1.50B18159-9376-411A-B519-12BB50D06DFC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a477829fb871b5ddb062d9c1fa2022f0038fa1fe --- /dev/null +++ b/features/TCGA-ZF-A9R5-01Z-00-DX1.50B18159-9376-411A-B519-12BB50D06DFC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c8bce0f05f089fc6263cc6f325f943ad947c7098d4359734249828a97a31621c +size 106430620 diff --git a/features/TCGA-ZF-A9R5-01Z-00-DX1.50B18159-9376-411A-B519-12BB50D06DFC.svs/mask.npy b/features/TCGA-ZF-A9R5-01Z-00-DX1.50B18159-9376-411A-B519-12BB50D06DFC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8bd3387c6735f779393b43af39e4efb7ac57b6c6 --- /dev/null +++ b/features/TCGA-ZF-A9R5-01Z-00-DX1.50B18159-9376-411A-B519-12BB50D06DFC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fc5e0a9416be1a2b1638bfa11b2a2aee46bf0b9217de699462362a0b5360d502 +size 135177248 diff --git a/features/TCGA-ZF-A9R5-01Z-00-DX1.50B18159-9376-411A-B519-12BB50D06DFC.svs/metadata.json b/features/TCGA-ZF-A9R5-01Z-00-DX1.50B18159-9376-411A-B519-12BB50D06DFC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b5978c99a9bb71e6607e585264e7932a8b972ff1 --- /dev/null +++ b/features/TCGA-ZF-A9R5-01Z-00-DX1.50B18159-9376-411A-B519-12BB50D06DFC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 12973, "total_number_of_tiles": 12973, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [95615, 90474], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [12, 12], "5": [24, 23], "6": [47, 45], "7": [94, 89], "8": [187, 177], "9": [374, 354], "10": [747, 707], "11": [1494, 1414], "12": [2988, 2828], "13": [5976, 5655], "14": [11952, 11310], "15": [23904, 22619], "16": [47808, 45237], "17": [95615, 90474]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c8affc396173adeae96b078a499fad4a"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9R7-01Z-00-DX1.AF323B5F-EE04-422E-B635-1050870897DC.svs/features.npy b/features/TCGA-ZF-A9R7-01Z-00-DX1.AF323B5F-EE04-422E-B635-1050870897DC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2e626bedc771530dd815892e923d5ee86e85bc88 --- /dev/null +++ b/features/TCGA-ZF-A9R7-01Z-00-DX1.AF323B5F-EE04-422E-B635-1050870897DC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3922c3c3bfcdf4f015cf2be7615e3cec5fd5f454796b6a3b2e2ce3282903b94a +size 226980196 diff --git a/features/TCGA-ZF-A9R7-01Z-00-DX1.AF323B5F-EE04-422E-B635-1050870897DC.svs/mask.npy b/features/TCGA-ZF-A9R7-01Z-00-DX1.AF323B5F-EE04-422E-B635-1050870897DC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..236630902b5ee90cdabd30ed09652ea3859af88c --- /dev/null +++ b/features/TCGA-ZF-A9R7-01Z-00-DX1.AF323B5F-EE04-422E-B635-1050870897DC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:91ecfc62b0e98ebb8ebb12a39802e547d3692bf85e9e6fbbf9469eac8ac85a16 +size 216869168 diff --git a/features/TCGA-ZF-A9R7-01Z-00-DX1.AF323B5F-EE04-422E-B635-1050870897DC.svs/metadata.json b/features/TCGA-ZF-A9R7-01Z-00-DX1.AF323B5F-EE04-422E-B635-1050870897DC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..63cca77884b994c72db4aee3188896dade0318b0 --- /dev/null +++ b/features/TCGA-ZF-A9R7-01Z-00-DX1.AF323B5F-EE04-422E-B635-1050870897DC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 27667, "total_number_of_tiles": 27667, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [151391, 91676], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [19, 12], "6": [37, 23], "7": [74, 45], "8": [148, 90], "9": [296, 180], "10": [592, 359], "11": [1183, 717], "12": [2366, 1433], "13": [4731, 2865], "14": [9462, 5730], "15": [18924, 11460], "16": [37848, 22919], "17": [75696, 45838], "18": [151391, 91676]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "bc581901ebe96b0931902afa4c23c475e104120addedf5b40fef06223374d8cd"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9R9-01Z-00-DX1.8E68A35C-F2B7-410E-A1DE-3C460D67DB85.svs/features.npy b/features/TCGA-ZF-A9R9-01Z-00-DX1.8E68A35C-F2B7-410E-A1DE-3C460D67DB85.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ae41c4523f06042a9f182addc4f606bcb340d0d2 --- /dev/null +++ b/features/TCGA-ZF-A9R9-01Z-00-DX1.8E68A35C-F2B7-410E-A1DE-3C460D67DB85.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a815bd172032dff3c1aad607b5d70aa1397a44b745ee153fbb773c559a8abc7 +size 183187244 diff --git a/features/TCGA-ZF-A9R9-01Z-00-DX1.8E68A35C-F2B7-410E-A1DE-3C460D67DB85.svs/mask.npy b/features/TCGA-ZF-A9R9-01Z-00-DX1.8E68A35C-F2B7-410E-A1DE-3C460D67DB85.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..718c1be11207c2000a93b7e0c7cf719e7ac4945a --- /dev/null +++ b/features/TCGA-ZF-A9R9-01Z-00-DX1.8E68A35C-F2B7-410E-A1DE-3C460D67DB85.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b17e44ff91d776775000e62bcda253ad466aef40b29a1d60766bd01d5b756103 +size 109143928 diff --git a/features/TCGA-ZF-A9R9-01Z-00-DX1.8E68A35C-F2B7-410E-A1DE-3C460D67DB85.svs/metadata.json b/features/TCGA-ZF-A9R9-01Z-00-DX1.8E68A35C-F2B7-410E-A1DE-3C460D67DB85.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..67dc24646ffc4cb03f73b8705f42bb98810d848c --- /dev/null +++ b/features/TCGA-ZF-A9R9-01Z-00-DX1.8E68A35C-F2B7-410E-A1DE-3C460D67DB85.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22329, "total_number_of_tiles": 22329, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [101591, 68747], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [13, 9], "5": [25, 17], "6": [50, 34], "7": [100, 68], "8": [199, 135], "9": [397, 269], "10": [794, 538], "11": [1588, 1075], "12": [3175, 2149], "13": [6350, 4297], "14": [12699, 8594], "15": [25398, 17187], "16": [50796, 34374], "17": [101591, 68747]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ca941bd35743447278821eb903f15aec"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9RC-01Z-00-DX1.A3F3826E-2BDE-48C3-9854-1061273AF9DC.svs/features.npy b/features/TCGA-ZF-A9RC-01Z-00-DX1.A3F3826E-2BDE-48C3-9854-1061273AF9DC.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0860b2c47d73a53e5503d8d2bfd6a13e051dfeb7 --- /dev/null +++ b/features/TCGA-ZF-A9RC-01Z-00-DX1.A3F3826E-2BDE-48C3-9854-1061273AF9DC.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cddf5a38e6b4db152e73e707709fda39f20ffac13c6bde9a0f1f97e6295553c3 +size 126112016 diff --git a/features/TCGA-ZF-A9RC-01Z-00-DX1.A3F3826E-2BDE-48C3-9854-1061273AF9DC.svs/mask.npy b/features/TCGA-ZF-A9RC-01Z-00-DX1.A3F3826E-2BDE-48C3-9854-1061273AF9DC.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1d303b90dd9be2ef2946b5ebcd1959ebd70d8717 --- /dev/null +++ b/features/TCGA-ZF-A9RC-01Z-00-DX1.A3F3826E-2BDE-48C3-9854-1061273AF9DC.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dec7d9e2312a59a20fa41727c1f9c6b950d5b14e2114d6801d7b00c23faa6215 +size 130988672 diff --git a/features/TCGA-ZF-A9RC-01Z-00-DX1.A3F3826E-2BDE-48C3-9854-1061273AF9DC.svs/metadata.json b/features/TCGA-ZF-A9RC-01Z-00-DX1.A3F3826E-2BDE-48C3-9854-1061273AF9DC.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a860c56bffc75d651670abe348e8905b35699dd3 --- /dev/null +++ b/features/TCGA-ZF-A9RC-01Z-00-DX1.A3F3826E-2BDE-48C3-9854-1061273AF9DC.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 15372, "total_number_of_tiles": 15372, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109559, 76507], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 5], "4": [14, 10], "5": [27, 19], "6": [54, 38], "7": [107, 75], "8": [214, 150], "9": [428, 299], "10": [856, 598], "11": [1712, 1196], "12": [3424, 2391], "13": [6848, 4782], "14": [13695, 9564], "15": [27390, 19127], "16": [54780, 38254], "17": [109559, 76507]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "42c3fcd55dd438206e40f8bee9ab3b32"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9RD-01Z-00-DX1.84823027-AA0A-412A-9DEA-EFBB8406FD9C.svs/features.npy b/features/TCGA-ZF-A9RD-01Z-00-DX1.84823027-AA0A-412A-9DEA-EFBB8406FD9C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..52f704d0501080867a8b7f5647ca27bd2db2b1ab --- /dev/null +++ b/features/TCGA-ZF-A9RD-01Z-00-DX1.84823027-AA0A-412A-9DEA-EFBB8406FD9C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7b2c4d4fd298838e40f5490f1b520f6bd309ecfa25c30fc75a0609c60d72e89e +size 182744228 diff --git a/features/TCGA-ZF-A9RD-01Z-00-DX1.84823027-AA0A-412A-9DEA-EFBB8406FD9C.svs/mask.npy b/features/TCGA-ZF-A9RD-01Z-00-DX1.84823027-AA0A-412A-9DEA-EFBB8406FD9C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..eeab254f1f09740556006053aee3ea1c9be6ce1a --- /dev/null +++ b/features/TCGA-ZF-A9RD-01Z-00-DX1.84823027-AA0A-412A-9DEA-EFBB8406FD9C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b5823384b957e12982a57e8f79951e28fdc8498ebe9382a6adcda0740942a264 +size 148629120 diff --git a/features/TCGA-ZF-A9RD-01Z-00-DX1.84823027-AA0A-412A-9DEA-EFBB8406FD9C.svs/metadata.json b/features/TCGA-ZF-A9RD-01Z-00-DX1.84823027-AA0A-412A-9DEA-EFBB8406FD9C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f0eba9a2c460d8e3fd99c1dfcfb542dfebe2e126 --- /dev/null +++ b/features/TCGA-ZF-A9RD-01Z-00-DX1.84823027-AA0A-412A-9DEA-EFBB8406FD9C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22275, "total_number_of_tiles": 22275, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [109559, 86812], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [7, 6], "4": [14, 11], "5": [27, 22], "6": [54, 43], "7": [107, 85], "8": [214, 170], "9": [428, 340], "10": [856, 679], "11": [1712, 1357], "12": [3424, 2713], "13": [6848, 5426], "14": [13695, 10852], "15": [27390, 21703], "16": [54780, 43406], "17": [109559, 86812]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2a7632b0221445c92d9b58d92381c630"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9RE-01Z-00-DX1.6E1EF772-E62D-4D9F-8688-43AAF764A6E6.svs/features.npy b/features/TCGA-ZF-A9RE-01Z-00-DX1.6E1EF772-E62D-4D9F-8688-43AAF764A6E6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1eb24b3bba05a13603236cc66b6d8e87e5141391 --- /dev/null +++ b/features/TCGA-ZF-A9RE-01Z-00-DX1.6E1EF772-E62D-4D9F-8688-43AAF764A6E6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:90cfe1b5441c151ac7e0fe16dd38bfe85eb383baa3265994099b8778c3b27917 +size 166155740 diff --git a/features/TCGA-ZF-A9RE-01Z-00-DX1.6E1EF772-E62D-4D9F-8688-43AAF764A6E6.svs/mask.npy b/features/TCGA-ZF-A9RE-01Z-00-DX1.6E1EF772-E62D-4D9F-8688-43AAF764A6E6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..e1bf48f14e59b1887d3df708a1eb448cd35d0b57 --- /dev/null +++ b/features/TCGA-ZF-A9RE-01Z-00-DX1.6E1EF772-E62D-4D9F-8688-43AAF764A6E6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9b57580de4e89abb66ac870bfbcd03da56007c8906d02e2ad2408069bede7c63 +size 216411008 diff --git a/features/TCGA-ZF-A9RE-01Z-00-DX1.6E1EF772-E62D-4D9F-8688-43AAF764A6E6.svs/metadata.json b/features/TCGA-ZF-A9RE-01Z-00-DX1.6E1EF772-E62D-4D9F-8688-43AAF764A6E6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d2029c5b9641e81402bf40834be725d7c0e2d233 --- /dev/null +++ b/features/TCGA-ZF-A9RE-01Z-00-DX1.6E1EF772-E62D-4D9F-8688-43AAF764A6E6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20253, "total_number_of_tiles": 20253, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [159359, 86912], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [20, 11], "6": [39, 22], "7": [78, 43], "8": [156, 85], "9": [312, 170], "10": [623, 340], "11": [1245, 679], "12": [2490, 1358], "13": [4980, 2716], "14": [9960, 5432], "15": [19920, 10864], "16": [39840, 21728], "17": [79680, 43456], "18": [159359, 86912]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "d99c65fec79822a622f49f4c365466df37c782dfbc78c4ca2c8f6d787e7cbae3"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9RF-01Z-00-DX1.948A32F2-EF55-44E8-BC52-6FCF4A3411BF.svs/features.npy b/features/TCGA-ZF-A9RF-01Z-00-DX1.948A32F2-EF55-44E8-BC52-6FCF4A3411BF.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ddd47962bebf1e4d5f793d3a277e5ee525504bb2 --- /dev/null +++ b/features/TCGA-ZF-A9RF-01Z-00-DX1.948A32F2-EF55-44E8-BC52-6FCF4A3411BF.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:82063f7d5767f34e8cd4c12616ad00460525782b5b29576a6efdde13d95fdc57 +size 309167868 diff --git a/features/TCGA-ZF-A9RF-01Z-00-DX1.948A32F2-EF55-44E8-BC52-6FCF4A3411BF.svs/mask.npy b/features/TCGA-ZF-A9RF-01Z-00-DX1.948A32F2-EF55-44E8-BC52-6FCF4A3411BF.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1d99ca06e2af07995e28a0abf4b08631c9990f0b --- /dev/null +++ b/features/TCGA-ZF-A9RF-01Z-00-DX1.948A32F2-EF55-44E8-BC52-6FCF4A3411BF.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:57a74f4d20f6c6ddb668f7b0cd9772a2d20c9f03039ff13a8247b0b14f49e786 +size 238732248 diff --git a/features/TCGA-ZF-A9RF-01Z-00-DX1.948A32F2-EF55-44E8-BC52-6FCF4A3411BF.svs/metadata.json b/features/TCGA-ZF-A9RF-01Z-00-DX1.948A32F2-EF55-44E8-BC52-6FCF4A3411BF.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a210b1cadb6163b3619d48fa188af04862f69a48 --- /dev/null +++ b/features/TCGA-ZF-A9RF-01Z-00-DX1.948A32F2-EF55-44E8-BC52-6FCF4A3411BF.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 37685, "total_number_of_tiles": 37685, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [161351, 94677], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [20, 12], "6": [40, 24], "7": [79, 47], "8": [158, 93], "9": [316, 185], "10": [631, 370], "11": [1261, 740], "12": [2522, 1480], "13": [5043, 2959], "14": [10085, 5918], "15": [20169, 11835], "16": [40338, 23670], "17": [80676, 47339], "18": [161351, 94677]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "305ff44195ad27b38d620c972f29ed8bb96361c8fd3f58416e900b187742fa99"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9RG-01Z-00-DX1.E9C92201-31AD-4D7E-87C0-64842D705380.svs/features.npy b/features/TCGA-ZF-A9RG-01Z-00-DX1.E9C92201-31AD-4D7E-87C0-64842D705380.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..4ae2521d308ce9583f820222c86837287951bbcc --- /dev/null +++ b/features/TCGA-ZF-A9RG-01Z-00-DX1.E9C92201-31AD-4D7E-87C0-64842D705380.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:570feabbfde996f135f1cb66e56f0dfe1b4e839d7cec72259f530c140306496b +size 209079068 diff --git a/features/TCGA-ZF-A9RG-01Z-00-DX1.E9C92201-31AD-4D7E-87C0-64842D705380.svs/mask.npy b/features/TCGA-ZF-A9RG-01Z-00-DX1.E9C92201-31AD-4D7E-87C0-64842D705380.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..1a1d1b54dc227e0c4baa4acf242baabadf8855df --- /dev/null +++ b/features/TCGA-ZF-A9RG-01Z-00-DX1.E9C92201-31AD-4D7E-87C0-64842D705380.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a1ef8d4cf45188ee609f8576f3588e37a52c444289e0307d1d4c81afef50e990 +size 167515448 diff --git a/features/TCGA-ZF-A9RG-01Z-00-DX1.E9C92201-31AD-4D7E-87C0-64842D705380.svs/metadata.json b/features/TCGA-ZF-A9RG-01Z-00-DX1.E9C92201-31AD-4D7E-87C0-64842D705380.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9a32063743a495c46a3b3fc45362d8bd61c94c8d --- /dev/null +++ b/features/TCGA-ZF-A9RG-01Z-00-DX1.E9C92201-31AD-4D7E-87C0-64842D705380.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25485, "total_number_of_tiles": 25485, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [121511, 88224], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [30, 22], "6": [60, 44], "7": [119, 87], "8": [238, 173], "9": [475, 345], "10": [950, 690], "11": [1899, 1379], "12": [3798, 2757], "13": [7595, 5514], "14": [15189, 11028], "15": [30378, 22056], "16": [60756, 44112], "17": [121511, 88224]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "2f610493cd61b99f9a1e31da589c1e00"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9RL-01Z-00-DX1.6A6B23B8-78D2-4468-8B25-A2D94130722C.svs/features.npy b/features/TCGA-ZF-A9RL-01Z-00-DX1.6A6B23B8-78D2-4468-8B25-A2D94130722C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..df4e9c7f2ae9185d4655dc5ac050554e5b34d0cd --- /dev/null +++ b/features/TCGA-ZF-A9RL-01Z-00-DX1.6A6B23B8-78D2-4468-8B25-A2D94130722C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:24530ad8338ed21220f4359e59b1dc32b5570813c54cb22a92abc9d599b43a75 +size 87692684 diff --git a/features/TCGA-ZF-A9RL-01Z-00-DX1.6A6B23B8-78D2-4468-8B25-A2D94130722C.svs/mask.npy b/features/TCGA-ZF-A9RL-01Z-00-DX1.6A6B23B8-78D2-4468-8B25-A2D94130722C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..41516b753502c22c00cb882a87da5e427fb6fb0c --- /dev/null +++ b/features/TCGA-ZF-A9RL-01Z-00-DX1.6A6B23B8-78D2-4468-8B25-A2D94130722C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:46ead559a2fde844b955e729393f5c050cb6b0bad7de27efa78e8a9502959df3 +size 158493952 diff --git a/features/TCGA-ZF-A9RL-01Z-00-DX1.6A6B23B8-78D2-4468-8B25-A2D94130722C.svs/metadata.json b/features/TCGA-ZF-A9RL-01Z-00-DX1.6A6B23B8-78D2-4468-8B25-A2D94130722C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..22c29711234e36ffa51799877a139e29a81892ed --- /dev/null +++ b/features/TCGA-ZF-A9RL-01Z-00-DX1.6A6B23B8-78D2-4468-8B25-A2D94130722C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 10689, "total_number_of_tiles": 10689, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [173303, 58514], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 1], "3": [6, 2], "4": [11, 4], "5": [22, 8], "6": [43, 15], "7": [85, 29], "8": [170, 58], "9": [339, 115], "10": [677, 229], "11": [1354, 458], "12": [2708, 915], "13": [5416, 1829], "14": [10832, 3658], "15": [21663, 7315], "16": [43326, 14629], "17": [86652, 29257], "18": [173303, 58514]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "0fafdf1208bcf9692858c370243271a5a8d2062f530f1031e9058f525aad03e4"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9RM-01Z-00-DX1.68758A74-2409-48F4-811A-EA42B4F8F942.svs/features.npy b/features/TCGA-ZF-A9RM-01Z-00-DX1.68758A74-2409-48F4-811A-EA42B4F8F942.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0123f007d1e1b0798639d8af1a8f65e781307714 --- /dev/null +++ b/features/TCGA-ZF-A9RM-01Z-00-DX1.68758A74-2409-48F4-811A-EA42B4F8F942.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:495a467302a0e2a49e4c437dacef57cfc7eccaddd977f78b6eb59020c516ec49 +size 267885340 diff --git a/features/TCGA-ZF-A9RM-01Z-00-DX1.68758A74-2409-48F4-811A-EA42B4F8F942.svs/mask.npy b/features/TCGA-ZF-A9RM-01Z-00-DX1.68758A74-2409-48F4-811A-EA42B4F8F942.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..f86978f8a0080d77d25fff7a9c49a55d42f07f91 --- /dev/null +++ b/features/TCGA-ZF-A9RM-01Z-00-DX1.68758A74-2409-48F4-811A-EA42B4F8F942.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a199f1111f3238c56cd78dfa96c1a057cca4d913af21125f59e95245a9f51aa6 +size 238328848 diff --git a/features/TCGA-ZF-A9RM-01Z-00-DX1.68758A74-2409-48F4-811A-EA42B4F8F942.svs/metadata.json b/features/TCGA-ZF-A9RM-01Z-00-DX1.68758A74-2409-48F4-811A-EA42B4F8F942.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..089538288076ee5e29c6a773d37b243c1c5c027c --- /dev/null +++ b/features/TCGA-ZF-A9RM-01Z-00-DX1.68758A74-2409-48F4-811A-EA42B4F8F942.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 32653, "total_number_of_tiles": 32653, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [161351, 94520], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [20, 12], "6": [40, 24], "7": [79, 47], "8": [158, 93], "9": [316, 185], "10": [631, 370], "11": [1261, 739], "12": [2522, 1477], "13": [5043, 2954], "14": [10085, 5908], "15": [20169, 11815], "16": [40338, 23630], "17": [80676, 47260], "18": [161351, 94520]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "c720e76bbf5c27183d94bc7f98be9e916460007e1b2aa72eb02c3d332018e00d"} \ No newline at end of file diff --git a/features/TCGA-ZF-A9RN-01Z-00-DX1.262DCE43-154D-492E-80C3-6F8C8D4058D0.svs/features.npy b/features/TCGA-ZF-A9RN-01Z-00-DX1.262DCE43-154D-492E-80C3-6F8C8D4058D0.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..6f1b1ca5ffa8efa71d32f511ee58730b2a10039d --- /dev/null +++ b/features/TCGA-ZF-A9RN-01Z-00-DX1.262DCE43-154D-492E-80C3-6F8C8D4058D0.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:64cadf45190c3d8ccb5745d6b2cc2d5f23517cb1b4fde2931257273990ac7fe4 +size 138623116 diff --git a/features/TCGA-ZF-A9RN-01Z-00-DX1.262DCE43-154D-492E-80C3-6F8C8D4058D0.svs/mask.npy b/features/TCGA-ZF-A9RN-01Z-00-DX1.262DCE43-154D-492E-80C3-6F8C8D4058D0.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..3e95ec3573f66e6ff5eea6d01823114f68b79108 --- /dev/null +++ b/features/TCGA-ZF-A9RN-01Z-00-DX1.262DCE43-154D-492E-80C3-6F8C8D4058D0.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f7ba41367c33d7274aaf8c5da35daed2dfc76e2eba78a67c38073d8c64ff0fdc +size 167447648 diff --git a/features/TCGA-ZF-A9RN-01Z-00-DX1.262DCE43-154D-492E-80C3-6F8C8D4058D0.svs/metadata.json b/features/TCGA-ZF-A9RN-01Z-00-DX1.262DCE43-154D-492E-80C3-6F8C8D4058D0.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..961b451f1cdfef693f83dd52d2877b59a064e4e4 --- /dev/null +++ b/features/TCGA-ZF-A9RN-01Z-00-DX1.262DCE43-154D-492E-80C3-6F8C8D4058D0.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16897, "total_number_of_tiles": 16897, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119519, 89653], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [30, 22], "6": [59, 44], "7": [117, 88], "8": [234, 176], "9": [467, 351], "10": [934, 701], "11": [1868, 1401], "12": [3735, 2802], "13": [7470, 5604], "14": [14940, 11207], "15": [29880, 22414], "16": [59760, 44827], "17": [119519, 89653]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "75d10a2dd083cad4878761f79052ac5f"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA4N-01Z-00-DX1.F176510E-CF8B-4681-9CDE-B6210D8DC88F.svs/features.npy b/features/TCGA-ZF-AA4N-01Z-00-DX1.F176510E-CF8B-4681-9CDE-B6210D8DC88F.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..b754c010d3154a8ad628b0e4ea62cf2578358939 --- /dev/null +++ b/features/TCGA-ZF-AA4N-01Z-00-DX1.F176510E-CF8B-4681-9CDE-B6210D8DC88F.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6f44273f205f0a475e9fdeae7e7c92b7977bdadd0981d900b4a4a6d4ed741029 +size 206822968 diff --git a/features/TCGA-ZF-AA4N-01Z-00-DX1.F176510E-CF8B-4681-9CDE-B6210D8DC88F.svs/mask.npy b/features/TCGA-ZF-AA4N-01Z-00-DX1.F176510E-CF8B-4681-9CDE-B6210D8DC88F.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..8c704a49b8d39685b392cbfeb817a83ddbed049b --- /dev/null +++ b/features/TCGA-ZF-AA4N-01Z-00-DX1.F176510E-CF8B-4681-9CDE-B6210D8DC88F.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c7834504b90974c0e479d8d99aed9c33323833724f711838a2a6362c3a87d2f7 +size 208323488 diff --git a/features/TCGA-ZF-AA4N-01Z-00-DX1.F176510E-CF8B-4681-9CDE-B6210D8DC88F.svs/metadata.json b/features/TCGA-ZF-AA4N-01Z-00-DX1.F176510E-CF8B-4681-9CDE-B6210D8DC88F.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6bb626648580f56d264560f6b2a484354a947446 --- /dev/null +++ b/features/TCGA-ZF-AA4N-01Z-00-DX1.F176510E-CF8B-4681-9CDE-B6210D8DC88F.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 25210, "total_number_of_tiles": 25210, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [143423, 92954], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [36, 23], "7": [71, 46], "8": [141, 91], "9": [281, 182], "10": [561, 364], "11": [1121, 727], "12": [2241, 1453], "13": [4482, 2905], "14": [8964, 5810], "15": [17928, 11620], "16": [35856, 23239], "17": [71712, 46477], "18": [143423, 92954]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a6329083f23326b967b5a7eaa5bc4ae141fa3594abe30b04b494f1e4db5c206e"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA4R-01Z-00-DX1.2CDCECED-FC91-48D4-AAAC-4452B7C2F218.svs/features.npy b/features/TCGA-ZF-AA4R-01Z-00-DX1.2CDCECED-FC91-48D4-AAAC-4452B7C2F218.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..f18452626f7f3032d86c73904c562cd61cd3147b --- /dev/null +++ b/features/TCGA-ZF-AA4R-01Z-00-DX1.2CDCECED-FC91-48D4-AAAC-4452B7C2F218.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:13c3aca269b55e25afcb5484135155091d7fc7a8c31265ad59261ff1ba359283 +size 135669676 diff --git a/features/TCGA-ZF-AA4R-01Z-00-DX1.2CDCECED-FC91-48D4-AAAC-4452B7C2F218.svs/mask.npy b/features/TCGA-ZF-AA4R-01Z-00-DX1.2CDCECED-FC91-48D4-AAAC-4452B7C2F218.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..867115ec0cff42c55f6a5cc71f9428bad835adcd --- /dev/null +++ b/features/TCGA-ZF-AA4R-01Z-00-DX1.2CDCECED-FC91-48D4-AAAC-4452B7C2F218.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7dc02d4b02e12de2be9c839a4886010517eb580c92f53ff997511d30a920fcd2 +size 182816924 diff --git a/features/TCGA-ZF-AA4R-01Z-00-DX1.2CDCECED-FC91-48D4-AAAC-4452B7C2F218.svs/metadata.json b/features/TCGA-ZF-AA4R-01Z-00-DX1.2CDCECED-FC91-48D4-AAAC-4452B7C2F218.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ec556850f7e832b1af6b7acf9f2065e9b36343bb --- /dev/null +++ b/features/TCGA-ZF-AA4R-01Z-00-DX1.2CDCECED-FC91-48D4-AAAC-4452B7C2F218.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16537, "total_number_of_tiles": 16537, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 94722], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 24], "6": [61, 47], "7": [121, 93], "8": [242, 186], "9": [483, 371], "10": [965, 741], "11": [1930, 1481], "12": [3860, 2961], "13": [7719, 5921], "14": [15438, 11841], "15": [30876, 23681], "16": [61752, 47361], "17": [123503, 94722]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ec5299b68eeab0a33001a76c741d3b11"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA4T-01Z-00-DX1.3AC48F6E-01E2-4C20-BEFE-3B4A150DFF67.svs/features.npy b/features/TCGA-ZF-AA4T-01Z-00-DX1.3AC48F6E-01E2-4C20-BEFE-3B4A150DFF67.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9b22d4b72a33aabb2cb7e4f727e9bac17824c0fd --- /dev/null +++ b/features/TCGA-ZF-AA4T-01Z-00-DX1.3AC48F6E-01E2-4C20-BEFE-3B4A150DFF67.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a5cb8535f2b7532b5f7b06db3f36cbe10428aca335ee1b5f63889712ed9cc93a +size 51340760 diff --git a/features/TCGA-ZF-AA4T-01Z-00-DX1.3AC48F6E-01E2-4C20-BEFE-3B4A150DFF67.svs/mask.npy b/features/TCGA-ZF-AA4T-01Z-00-DX1.3AC48F6E-01E2-4C20-BEFE-3B4A150DFF67.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b62577350256113773606da63e6064c7cc7aab58 --- /dev/null +++ b/features/TCGA-ZF-AA4T-01Z-00-DX1.3AC48F6E-01E2-4C20-BEFE-3B4A150DFF67.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:51aae3bd8556eb665dc52e5865dc337a0acdd6261c03b2e5707fa12ba0018fcd +size 123198892 diff --git a/features/TCGA-ZF-AA4T-01Z-00-DX1.3AC48F6E-01E2-4C20-BEFE-3B4A150DFF67.svs/metadata.json b/features/TCGA-ZF-AA4T-01Z-00-DX1.3AC48F6E-01E2-4C20-BEFE-3B4A150DFF67.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..68be02528947c7755f85da517f99cb2d7d1f4a16 --- /dev/null +++ b/features/TCGA-ZF-AA4T-01Z-00-DX1.3AC48F6E-01E2-4C20-BEFE-3B4A150DFF67.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 6258, "total_number_of_tiles": 6258, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [89639, 87945], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [3, 3], "3": [6, 6], "4": [11, 11], "5": [22, 22], "6": [44, 43], "7": [88, 86], "8": [176, 172], "9": [351, 344], "10": [701, 688], "11": [1401, 1375], "12": [2802, 2749], "13": [5603, 5497], "14": [11205, 10994], "15": [22410, 21987], "16": [44820, 43973], "17": [89639, 87945]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "44ef31b9197f0ad8aab8cb80429cc75ef66f3fe121ba2dbbeb1a350a3e7cdf1b"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA4U-01Z-00-DX1.E7FBFD1C-E974-4B9C-8DA8-D14FEC22D117.svs/features.npy b/features/TCGA-ZF-AA4U-01Z-00-DX1.E7FBFD1C-E974-4B9C-8DA8-D14FEC22D117.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..1125ea5f52883603a718d243c1f9fe3a63a696a4 --- /dev/null +++ b/features/TCGA-ZF-AA4U-01Z-00-DX1.E7FBFD1C-E974-4B9C-8DA8-D14FEC22D117.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:70f59f7cb45d969d13b9ebeb4e7c940023eca458fd2e2dc37b97453cf589bfe4 +size 160642652 diff --git a/features/TCGA-ZF-AA4U-01Z-00-DX1.E7FBFD1C-E974-4B9C-8DA8-D14FEC22D117.svs/mask.npy b/features/TCGA-ZF-AA4U-01Z-00-DX1.E7FBFD1C-E974-4B9C-8DA8-D14FEC22D117.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..2dc878cd4bf7f9be29359b33f2c535bc041c01a6 --- /dev/null +++ b/features/TCGA-ZF-AA4U-01Z-00-DX1.E7FBFD1C-E974-4B9C-8DA8-D14FEC22D117.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:073c8d46c38087445d285b76883493bf71e26df1bb67dc753fec44d8c2a3d380 +size 156201812 diff --git a/features/TCGA-ZF-AA4U-01Z-00-DX1.E7FBFD1C-E974-4B9C-8DA8-D14FEC22D117.svs/metadata.json b/features/TCGA-ZF-AA4U-01Z-00-DX1.E7FBFD1C-E974-4B9C-8DA8-D14FEC22D117.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..957101a46b7faa4d86a07b258ee23cebc64314d7 --- /dev/null +++ b/features/TCGA-ZF-AA4U-01Z-00-DX1.E7FBFD1C-E974-4B9C-8DA8-D14FEC22D117.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 19581, "total_number_of_tiles": 19581, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 80929], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [31, 20], "6": [61, 40], "7": [121, 80], "8": [242, 159], "9": [483, 317], "10": [965, 633], "11": [1930, 1265], "12": [3860, 2530], "13": [7719, 5059], "14": [15438, 10117], "15": [30876, 20233], "16": [61752, 40465], "17": [123503, 80929]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "aefdc35a451feef42df3a3b44a540ce1"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.svs/features.npy b/features/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..0e918d6597f5ad88f99ec4623d3ce2c72f70bb7e --- /dev/null +++ b/features/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:11b797709f19476c5b6255d732f370ee3eb37186fb6edba3ca8deb86a60240f9 +size 132043508 diff --git a/features/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.svs/mask.npy b/features/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..d2defbf96149f48240706f29dd9ebacdf7d6f4e1 --- /dev/null +++ b/features/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:37929507aba72e3d19ca65df61c87b3c4962cc5d5cbac56c9067d569200a778a +size 199797728 diff --git a/features/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.svs/metadata.json b/features/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b595f31de95917d4b7a3a1879380f719e0d24338 --- /dev/null +++ b/features/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16095, "total_number_of_tiles": 16095, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135455, 94392], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [34, 24], "7": [67, 47], "8": [133, 93], "9": [265, 185], "10": [530, 369], "11": [1059, 738], "12": [2117, 1475], "13": [4233, 2950], "14": [8466, 5900], "15": [16932, 11799], "16": [33864, 23598], "17": [67728, 47196], "18": [135455, 94392]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "e9421a252d6b7b10af10e8949c3e9fd5cabd43840310d3efeea1d46808ca77aa"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA4W-01Z-00-DX1.1B35CC2D-3115-4BCF-8BAD-164806CAA7D3.svs/features.npy b/features/TCGA-ZF-AA4W-01Z-00-DX1.1B35CC2D-3115-4BCF-8BAD-164806CAA7D3.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a9ec728e6c8b2261ffb18dea4a9f2d95a2fa2533 --- /dev/null +++ b/features/TCGA-ZF-AA4W-01Z-00-DX1.1B35CC2D-3115-4BCF-8BAD-164806CAA7D3.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:68e516faa953bcd50036c9c3b07bfd7d02273226b3ec4208bcc096faba3b3822 +size 131895836 diff --git a/features/TCGA-ZF-AA4W-01Z-00-DX1.1B35CC2D-3115-4BCF-8BAD-164806CAA7D3.svs/mask.npy b/features/TCGA-ZF-AA4W-01Z-00-DX1.1B35CC2D-3115-4BCF-8BAD-164806CAA7D3.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..178b8e102c10cf94f7f25ac7787d1ebe60802b76 --- /dev/null +++ b/features/TCGA-ZF-AA4W-01Z-00-DX1.1B35CC2D-3115-4BCF-8BAD-164806CAA7D3.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5456492af6f259744e5e552e592b2c556bb0282495a98f9ff2c7fdb77132a456 +size 97128048 diff --git a/features/TCGA-ZF-AA4W-01Z-00-DX1.1B35CC2D-3115-4BCF-8BAD-164806CAA7D3.svs/metadata.json b/features/TCGA-ZF-AA4W-01Z-00-DX1.1B35CC2D-3115-4BCF-8BAD-164806CAA7D3.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ea4a652f5acb124627232c1211906a10340af77c --- /dev/null +++ b/features/TCGA-ZF-AA4W-01Z-00-DX1.1B35CC2D-3115-4BCF-8BAD-164806CAA7D3.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 16077, "total_number_of_tiles": 16077, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [97607, 63677], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [6, 4], "4": [12, 8], "5": [24, 16], "6": [48, 32], "7": [96, 63], "8": [191, 125], "9": [382, 249], "10": [763, 498], "11": [1526, 995], "12": [3051, 1990], "13": [6101, 3980], "14": [12201, 7960], "15": [24402, 15920], "16": [48804, 31839], "17": [97607, 63677]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "30b8c35fe607b8bd2e5404f25f93b8cb5319e71cb23f2020d9b814687a3e35e3"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA4X-01Z-00-DX1.925D02DA-FAFF-4F2B-A3CE-BF884E5C4C03.svs/features.npy b/features/TCGA-ZF-AA4X-01Z-00-DX1.925D02DA-FAFF-4F2B-A3CE-BF884E5C4C03.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..622590643e9941dd4e1bb2b68b5c4df2abb9496f --- /dev/null +++ b/features/TCGA-ZF-AA4X-01Z-00-DX1.925D02DA-FAFF-4F2B-A3CE-BF884E5C4C03.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:667c8bda3d0c3f438bcca261b7f2c4c298631dda9ce47db1f41de837761f36d1 +size 184524496 diff --git a/features/TCGA-ZF-AA4X-01Z-00-DX1.925D02DA-FAFF-4F2B-A3CE-BF884E5C4C03.svs/mask.npy b/features/TCGA-ZF-AA4X-01Z-00-DX1.925D02DA-FAFF-4F2B-A3CE-BF884E5C4C03.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7b57653289a8e089bc662125654ff41fc161a2e1 --- /dev/null +++ b/features/TCGA-ZF-AA4X-01Z-00-DX1.925D02DA-FAFF-4F2B-A3CE-BF884E5C4C03.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:08f90ed94d712dcf62e8b7f7202eb609e5d77679d02bec67b8c3d9ab963432c8 +size 215014616 diff --git a/features/TCGA-ZF-AA4X-01Z-00-DX1.925D02DA-FAFF-4F2B-A3CE-BF884E5C4C03.svs/metadata.json b/features/TCGA-ZF-AA4X-01Z-00-DX1.925D02DA-FAFF-4F2B-A3CE-BF884E5C4C03.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b9b57c23fe818ba7b55464f0d4da06bf43b48870 --- /dev/null +++ b/features/TCGA-ZF-AA4X-01Z-00-DX1.925D02DA-FAFF-4F2B-A3CE-BF884E5C4C03.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22492, "total_number_of_tiles": 22492, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [151391, 90885], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [10, 6], "5": [19, 12], "6": [37, 23], "7": [74, 45], "8": [148, 89], "9": [296, 178], "10": [592, 356], "11": [1183, 711], "12": [2366, 1421], "13": [4731, 2841], "14": [9462, 5681], "15": [18924, 11361], "16": [37848, 22722], "17": [75696, 45443], "18": [151391, 90885]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "6f213c28a37a8b3e4ac4aa0f147a70a9e4fc91573254b15ce75fb33e0aeffb9d"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA51-01Z-00-DX1.128C9731-C206-4E71-9A64-864FA9FD7E96.svs/features.npy b/features/TCGA-ZF-AA51-01Z-00-DX1.128C9731-C206-4E71-9A64-864FA9FD7E96.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..342b44288748331cd8cc9f99a16b475755611a1e --- /dev/null +++ b/features/TCGA-ZF-AA51-01Z-00-DX1.128C9731-C206-4E71-9A64-864FA9FD7E96.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8c96f5e153ead3a1f6a7d926b474375a6e5af8b26495b56112c7538cd1a4ed8e +size 168157516 diff --git a/features/TCGA-ZF-AA51-01Z-00-DX1.128C9731-C206-4E71-9A64-864FA9FD7E96.svs/mask.npy b/features/TCGA-ZF-AA51-01Z-00-DX1.128C9731-C206-4E71-9A64-864FA9FD7E96.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7136a384801afb9f695741e4e937df08bcc5ceeb --- /dev/null +++ b/features/TCGA-ZF-AA51-01Z-00-DX1.128C9731-C206-4E71-9A64-864FA9FD7E96.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ce3bf36919b20b7c80e53ccac2e9799f1aa7f08fcd33a72d1b6573cdc2b8544 +size 200136368 diff --git a/features/TCGA-ZF-AA51-01Z-00-DX1.128C9731-C206-4E71-9A64-864FA9FD7E96.svs/metadata.json b/features/TCGA-ZF-AA51-01Z-00-DX1.128C9731-C206-4E71-9A64-864FA9FD7E96.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ac031a9f4e93997560475f490a68b81b07440944 --- /dev/null +++ b/features/TCGA-ZF-AA51-01Z-00-DX1.128C9731-C206-4E71-9A64-864FA9FD7E96.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 20497, "total_number_of_tiles": 20497, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [135455, 94550], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [34, 24], "7": [67, 47], "8": [133, 93], "9": [265, 185], "10": [530, 370], "11": [1059, 739], "12": [2117, 1478], "13": [4233, 2955], "14": [8466, 5910], "15": [16932, 11819], "16": [33864, 23638], "17": [67728, 47275], "18": [135455, 94550]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "f49ccd249684d1cd92210ed2a01ba0eb7f99b6a01fc49be3c9786b99a7541978"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA52-01Z-00-DX1.BABC9074-8AF5-42E7-B3F8-39590121B620.svs/features.npy b/features/TCGA-ZF-AA52-01Z-00-DX1.BABC9074-8AF5-42E7-B3F8-39590121B620.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a70cfb55f10e9fb1abfb6d5607d55481993f563a --- /dev/null +++ b/features/TCGA-ZF-AA52-01Z-00-DX1.BABC9074-8AF5-42E7-B3F8-39590121B620.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f7f2f46bc72ab6a8c603bb32970e1978eec1d846451a956228d66e12cdab4e2 +size 248966916 diff --git a/features/TCGA-ZF-AA52-01Z-00-DX1.BABC9074-8AF5-42E7-B3F8-39590121B620.svs/mask.npy b/features/TCGA-ZF-AA52-01Z-00-DX1.BABC9074-8AF5-42E7-B3F8-39590121B620.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..5375ddc4751b9715e54d19cb1552f0464481eb72 --- /dev/null +++ b/features/TCGA-ZF-AA52-01Z-00-DX1.BABC9074-8AF5-42E7-B3F8-39590121B620.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e7fe219355ad4e18831c9489d047dd2f0b15ef320c396a30b4d00cfd343c1e2f +size 164385144 diff --git a/features/TCGA-ZF-AA52-01Z-00-DX1.BABC9074-8AF5-42E7-B3F8-39590121B620.svs/metadata.json b/features/TCGA-ZF-AA52-01Z-00-DX1.BABC9074-8AF5-42E7-B3F8-39590121B620.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0a424e9c2302710e980ca8114bc92fbadd2b3f62 --- /dev/null +++ b/features/TCGA-ZF-AA52-01Z-00-DX1.BABC9074-8AF5-42E7-B3F8-39590121B620.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 30347, "total_number_of_tiles": 30347, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [129479, 81240], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [16, 10], "5": [32, 20], "6": [64, 40], "7": [127, 80], "8": [253, 159], "9": [506, 318], "10": [1012, 635], "11": [2024, 1270], "12": [4047, 2539], "13": [8093, 5078], "14": [16185, 10155], "15": [32370, 20310], "16": [64740, 40620], "17": [129479, 81240]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "03fcd00ba72f7c2a5982d853aabb1ed8"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA53-01Z-00-DX1.04E05AAC-DAE2-428F-98DD-37F2B414E818.svs/features.npy b/features/TCGA-ZF-AA53-01Z-00-DX1.04E05AAC-DAE2-428F-98DD-37F2B414E818.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..be1285435d80290eacf0e5bdbea42a3db12e2409 --- /dev/null +++ b/features/TCGA-ZF-AA53-01Z-00-DX1.04E05AAC-DAE2-428F-98DD-37F2B414E818.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eec69c374d623f24837db870f1adac2a09436b05654c3ea3d3f8610de9ec07fd +size 350548844 diff --git a/features/TCGA-ZF-AA53-01Z-00-DX1.04E05AAC-DAE2-428F-98DD-37F2B414E818.svs/mask.npy b/features/TCGA-ZF-AA53-01Z-00-DX1.04E05AAC-DAE2-428F-98DD-37F2B414E818.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..9de6f16f413948cfef324899c3edc159da1fd1ec --- /dev/null +++ b/features/TCGA-ZF-AA53-01Z-00-DX1.04E05AAC-DAE2-428F-98DD-37F2B414E818.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6f92b88fd080cd4b005802d0b36938c5d6077e1dc91ec86c2b4a841627ddef42 +size 185746048 diff --git a/features/TCGA-ZF-AA53-01Z-00-DX1.04E05AAC-DAE2-428F-98DD-37F2B414E818.svs/metadata.json b/features/TCGA-ZF-AA53-01Z-00-DX1.04E05AAC-DAE2-428F-98DD-37F2B414E818.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6ebbf991b22043ccb8129b4849b7f59d4353a0ee --- /dev/null +++ b/features/TCGA-ZF-AA53-01Z-00-DX1.04E05AAC-DAE2-428F-98DD-37F2B414E818.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 42729, "total_number_of_tiles": 42729, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [125495, 94720], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 24], "6": [62, 47], "7": [123, 93], "8": [246, 185], "9": [491, 370], "10": [981, 740], "11": [1961, 1480], "12": [3922, 2960], "13": [7844, 5920], "14": [15687, 11840], "15": [31374, 23680], "16": [62748, 47360], "17": [125495, 94720]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a2efd16be2583804f2efa57709570db0"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA54-01Z-00-DX1.9118BB51-333A-4257-A797-75620F1E7AD6.svs/features.npy b/features/TCGA-ZF-AA54-01Z-00-DX1.9118BB51-333A-4257-A797-75620F1E7AD6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a894c2e87c760d0b0a2878cbbd172aa2ce8e91a8 --- /dev/null +++ b/features/TCGA-ZF-AA54-01Z-00-DX1.9118BB51-333A-4257-A797-75620F1E7AD6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b0576381634cac04a611a78f99e50f1775572d23c28c8f105b373113c097104d +size 197224288 diff --git a/features/TCGA-ZF-AA54-01Z-00-DX1.9118BB51-333A-4257-A797-75620F1E7AD6.svs/mask.npy b/features/TCGA-ZF-AA54-01Z-00-DX1.9118BB51-333A-4257-A797-75620F1E7AD6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..7e9937e3a3e0b6ff40b38e94096f52ac941ff2a1 --- /dev/null +++ b/features/TCGA-ZF-AA54-01Z-00-DX1.9118BB51-333A-4257-A797-75620F1E7AD6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:44af61329c8781c893c8a2ab31253a92e708ac5358231a6df041b71ef7263050 +size 155585288 diff --git a/features/TCGA-ZF-AA54-01Z-00-DX1.9118BB51-333A-4257-A797-75620F1E7AD6.svs/metadata.json b/features/TCGA-ZF-AA54-01Z-00-DX1.9118BB51-333A-4257-A797-75620F1E7AD6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..615663cde835e03cb9172d481953ce28067a26a2 --- /dev/null +++ b/features/TCGA-ZF-AA54-01Z-00-DX1.9118BB51-333A-4257-A797-75620F1E7AD6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 24040, "total_number_of_tiles": 24040, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119519, 83311], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [15, 11], "5": [30, 21], "6": [59, 41], "7": [117, 82], "8": [234, 163], "9": [467, 326], "10": [934, 651], "11": [1868, 1302], "12": [3735, 2604], "13": [7470, 5207], "14": [14940, 10414], "15": [29880, 20828], "16": [59760, 41656], "17": [119519, 83311]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "7868b3cf7a48c207e8adc2f128736ee7"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA58-01Z-00-DX1.85C3611E-11FA-4AAE-B880-C67C8CC7383B.svs/features.npy b/features/TCGA-ZF-AA58-01Z-00-DX1.85C3611E-11FA-4AAE-B880-C67C8CC7383B.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..2a66a7cbca5b33eb47b52016c41a59cb6e8a3d04 --- /dev/null +++ b/features/TCGA-ZF-AA58-01Z-00-DX1.85C3611E-11FA-4AAE-B880-C67C8CC7383B.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:801dcafbe079285ee08ead3723cd904ed4e6181d280feaca0e925045b7df1bda +size 187789688 diff --git a/features/TCGA-ZF-AA58-01Z-00-DX1.85C3611E-11FA-4AAE-B880-C67C8CC7383B.svs/mask.npy b/features/TCGA-ZF-AA58-01Z-00-DX1.85C3611E-11FA-4AAE-B880-C67C8CC7383B.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..b746f179227d63d2d4efcaa8a68e7d6346915898 --- /dev/null +++ b/features/TCGA-ZF-AA58-01Z-00-DX1.85C3611E-11FA-4AAE-B880-C67C8CC7383B.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4ea3f785fd967ae93048d68aef511dda183678227fd0b6a88aac075ce6d57f18 +size 187413464 diff --git a/features/TCGA-ZF-AA58-01Z-00-DX1.85C3611E-11FA-4AAE-B880-C67C8CC7383B.svs/metadata.json b/features/TCGA-ZF-AA58-01Z-00-DX1.85C3611E-11FA-4AAE-B880-C67C8CC7383B.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fbf42dad9c9bdecf4a38d0d57ffc9978728af969 --- /dev/null +++ b/features/TCGA-ZF-AA58-01Z-00-DX1.85C3611E-11FA-4AAE-B880-C67C8CC7383B.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22890, "total_number_of_tiles": 22890, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [131471, 91225], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [17, 12], "6": [33, 23], "7": [65, 45], "8": [129, 90], "9": [257, 179], "10": [514, 357], "11": [1028, 713], "12": [2055, 1426], "13": [4109, 2851], "14": [8217, 5702], "15": [16434, 11404], "16": [32868, 22807], "17": [65736, 45613], "18": [131471, 91225]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "629f67ade8878b8d861f4a2b47f0556f9b115dbe188634b598288bb5120d6a1a"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA5H-01Z-00-DX1.2B5DF00E-E0FD-4C58-A82C-3107A27F99D6.svs/features.npy b/features/TCGA-ZF-AA5H-01Z-00-DX1.2B5DF00E-E0FD-4C58-A82C-3107A27F99D6.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..a70e1a6fb6dfe6f2b3dbea2e2adaa5b3b368a4aa --- /dev/null +++ b/features/TCGA-ZF-AA5H-01Z-00-DX1.2B5DF00E-E0FD-4C58-A82C-3107A27F99D6.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b36c8a98cefc27d87b1558ef406ad02445fd8f02d0e79819cd74323ed8910b8e +size 186583700 diff --git a/features/TCGA-ZF-AA5H-01Z-00-DX1.2B5DF00E-E0FD-4C58-A82C-3107A27F99D6.svs/mask.npy b/features/TCGA-ZF-AA5H-01Z-00-DX1.2B5DF00E-E0FD-4C58-A82C-3107A27F99D6.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..c11f44916c844481f99daf3b6b9d14fc02f40819 --- /dev/null +++ b/features/TCGA-ZF-AA5H-01Z-00-DX1.2B5DF00E-E0FD-4C58-A82C-3107A27F99D6.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:014188c47d685468e84bdf3e154f486d7d9c1d70942724a0658dcb711cec47c0 +size 199782788 diff --git a/features/TCGA-ZF-AA5H-01Z-00-DX1.2B5DF00E-E0FD-4C58-A82C-3107A27F99D6.svs/metadata.json b/features/TCGA-ZF-AA5H-01Z-00-DX1.2B5DF00E-E0FD-4C58-A82C-3107A27F99D6.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..beff1dd338a31a50708970cc40cfcfd183a26162 --- /dev/null +++ b/features/TCGA-ZF-AA5H-01Z-00-DX1.2B5DF00E-E0FD-4C58-A82C-3107A27F99D6.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 22743, "total_number_of_tiles": 22743, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 17, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [139439, 91690], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 1], "2": [3, 2], "3": [5, 3], "4": [9, 6], "5": [18, 12], "6": [35, 23], "7": [69, 45], "8": [137, 90], "9": [273, 180], "10": [545, 359], "11": [1090, 717], "12": [2179, 1433], "13": [4358, 2866], "14": [8715, 5731], "15": [17430, 11462], "16": [34860, 22923], "17": [69720, 45845], "18": [139439, 91690]}, "level_mpp_mapping": {"0": 66243.7888, "1": 33121.8944, "2": 16560.9472, "3": 8280.4736, "4": 4140.2368, "5": 2070.1184, "6": 1035.0592, "7": 517.5296, "8": 258.7648, "9": 129.3824, "10": 64.6912, "11": 32.3456, "12": 16.1728, "13": 8.0864, "14": 4.0432, "15": 2.0216, "16": 1.0108, "17": 0.5054, "18": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "a951073dbec92493a8186783688a21e2f578ae8e24966ddd8dfd78ce2ccca010"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA5N-01Z-00-DX1.A207E3EE-CC7D-4267-A77E-71BBD15B95A8.svs/features.npy b/features/TCGA-ZF-AA5N-01Z-00-DX1.A207E3EE-CC7D-4267-A77E-71BBD15B95A8.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..9fa42da9986c85d13f5ae8e6035800fb55a5e735 --- /dev/null +++ b/features/TCGA-ZF-AA5N-01Z-00-DX1.A207E3EE-CC7D-4267-A77E-71BBD15B95A8.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:003e6662621a9b9fb7afd7c94ef40af1dfe93ccf8fa92a964f91d83756fb0ea5 +size 214493708 diff --git a/features/TCGA-ZF-AA5N-01Z-00-DX1.A207E3EE-CC7D-4267-A77E-71BBD15B95A8.svs/mask.npy b/features/TCGA-ZF-AA5N-01Z-00-DX1.A207E3EE-CC7D-4267-A77E-71BBD15B95A8.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..843a29db028b30407892914d911c24758c50adc4 --- /dev/null +++ b/features/TCGA-ZF-AA5N-01Z-00-DX1.A207E3EE-CC7D-4267-A77E-71BBD15B95A8.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:561351a025dd017096d0d9d68936c25f07d54cfd46716449d1ea8aeda68548bb +size 182816924 diff --git a/features/TCGA-ZF-AA5N-01Z-00-DX1.A207E3EE-CC7D-4267-A77E-71BBD15B95A8.svs/metadata.json b/features/TCGA-ZF-AA5N-01Z-00-DX1.A207E3EE-CC7D-4267-A77E-71BBD15B95A8.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..57a0aaa9faa7733baf94af96a717ea07a4ff171d --- /dev/null +++ b/features/TCGA-ZF-AA5N-01Z-00-DX1.A207E3EE-CC7D-4267-A77E-71BBD15B95A8.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 26145, "total_number_of_tiles": 26145, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [123503, 94723], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 6], "4": [16, 12], "5": [31, 24], "6": [61, 47], "7": [121, 93], "8": [242, 186], "9": [483, 371], "10": [965, 741], "11": [1930, 1481], "12": [3860, 2961], "13": [7719, 5921], "14": [15438, 11841], "15": [30876, 23681], "16": [61752, 47362], "17": [123503, 94723]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "02e9e3aeddc2d3c16d319133526d21be"} \ No newline at end of file diff --git a/features/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.svs/features.npy b/features/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.svs/features.npy new file mode 100644 index 0000000000000000000000000000000000000000..ee11a25166cd0709ba88698a1e5ea241fead5c30 --- /dev/null +++ b/features/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.svs/features.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f63dcec2b1b8cb323fc915cd94ba954541da60a39bfc7ddd0c6cb3e758eabbc4 +size 253618584 diff --git a/features/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.svs/mask.npy b/features/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.svs/mask.npy new file mode 100644 index 0000000000000000000000000000000000000000..6df4e9f0b7cdcfdbbe12d5049d1383723ae37469 --- /dev/null +++ b/features/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.svs/mask.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9978332871001e65b454e2713856ce6ddb0486d4227ae4233eefd8db1e209062 +size 151760648 diff --git a/features/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.svs/metadata.json b/features/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.svs/metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..05b52d588d644386771d615270af6ad5a4e8baac --- /dev/null +++ b/features/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.svs/metadata.json @@ -0,0 +1 @@ +{"version": "3.0.0", "tiling_tool_version": "9.5.0", "nb_tiles": 30914, "total_number_of_tiles": 30914, "sampling_mode": {"mode": "random", "seed": 0}, "matter_detector": {"name": "BUNet", "dilatation": 1, "threshold": 0.5}, "features_extractor": "WideResNetCOAD", "level": 16, "tile_size": 224, "absolute_tile_size": 448, "slide_size": [119519, 81250], "tile_mpp": 0.5054, "level_dimensions": {"0": [1, 1], "1": [2, 2], "2": [4, 3], "3": [8, 5], "4": [15, 10], "5": [30, 20], "6": [59, 40], "7": [117, 80], "8": [234, 159], "9": [467, 318], "10": [934, 635], "11": [1868, 1270], "12": [3735, 2540], "13": [7470, 5079], "14": [14940, 10157], "15": [29880, 20313], "16": [59760, 40625], "17": [119519, 81250]}, "level_mpp_mapping": {"0": 33121.8944, "1": 16560.9472, "2": 8280.4736, "3": 4140.2368, "4": 2070.1184, "5": 1035.0592, "6": 517.5296, "7": 258.7648, "8": 129.3824, "9": 64.6912, "10": 32.3456, "11": 16.1728, "12": 8.0864, "13": 4.0432, "14": 2.0216, "15": 1.0108, "16": 0.5054, "17": 0.2527}, "environment": {"python_version": "3.8.10 | packaged by conda-forge | (default, May 11 2021, 07:01:05) \n[GCC 9.3.0]", "pixman_version": "0.36.0", "openslide_version": "3.4.1", "classic_algos_version": "1.7.3", "torch_version": "1.11.0+cu102", "openslide_python_version": "1.1.2", "platform": "Linux-5.4.0-135-generic-x86_64-with-glibc2.10"}, "slide_hash": "ac92c4f58ff5de6045e27ac413b430e1"} \ No newline at end of file diff --git a/features/exp_07_12_2022_17:08:24:907.env b/features/exp_07_12_2022_17:08:24:907.env new file mode 100644 index 0000000000000000000000000000000000000000..cbe175a13701fccba0558f2311a9064797489034 --- /dev/null +++ b/features/exp_07_12_2022_17:08:24:907.env @@ -0,0 +1,1456 @@ +2022-12-07 at 17:08:24 | ENV | **************************************************************************************************** +2022-12-07 at 17:08:24 | ENV | Logging system environment info ... +2022-12-07 at 17:08:24 | ENV | +AUTHENTICATE_VIA_JUPYTER:true +AUTOJUMP_ERROR_PATH:/root/.local/share/autojump/errors.log +AUTOJUMP_SOURCED:1 +BLIS_NUM_THREADS:32 +COLUMNS:123 +CONDA_DEFAULT_ENV:base +CONDA_DIR:/opt/conda +CONDA_EXE:/opt/conda/bin/conda +CONDA_MKL_INTERFACE_LAYER_BACKUP: +CONDA_PREFIX:/opt/conda +CONDA_PROMPT_MODIFIER:(base) +CONDA_PYTHON_DIR:/opt/conda/lib/python3.8 +CONDA_PYTHON_EXE:/opt/conda/bin/python +CONDA_ROOT:/opt/conda +CONDA_SHLVL:1 +CONDA_VERSION:4.9.2 +CONFIG_BACKUP_ENABLED:true +CUDA_VERSION:11.2.2 +CUDNN_VERSION:8.1.1.33 +DATA_ENVIRONMENT:/workspace/environment +DEBIAN_FRONTEND:noninteractive +DISPLAY::1 +ENABLE_IPC:1 +GIT_PYTHON_REFRESH:quiet +GREP_COLOR:1;33 +HDF5_USE_FILE_LOCKING:False +HOME:/root +HOSTNAME:ws-csaillard-mlhub-erlangen +HUB_PORT:tcp://10.97.52.57:8081 +HUB_PORT_22_TCP:tcp://10.97.52.57:22 +HUB_PORT_22_TCP_ADDR:10.97.52.57 +HUB_PORT_22_TCP_PORT:22 +HUB_PORT_22_TCP_PROTO:tcp +HUB_PORT_8081_TCP:tcp://10.97.52.57:8081 +HUB_PORT_8081_TCP_ADDR:10.97.52.57 +HUB_PORT_8081_TCP_PORT:8081 +HUB_PORT_8081_TCP_PROTO:tcp +HUB_SERVICE_HOST:10.97.52.57 +HUB_SERVICE_PORT:8081 +HUB_SERVICE_PORT_HUB:8081 +HUB_SERVICE_PORT_SSH:22 +INCLUDE_TUTORIALS:true +JPY_API_TOKEN:4761f821814f469b8bd761451e3fb187 +JUPYTERHUB_ACTIVITY_URL:http://10.97.52.57:8081/hub/api/users/csaillard/activity +JUPYTERHUB_ADMIN_ACCESS:1 +JUPYTERHUB_API_TOKEN:4761f821814f469b8bd761451e3fb187 +JUPYTERHUB_API_URL:http://10.97.52.57:8081/hub/api +JUPYTERHUB_BASE_URL:/ +JUPYTERHUB_CLIENT_ID:jupyterhub-user-csaillard-erlangen +JUPYTERHUB_HOST: +JUPYTERHUB_OAUTH_CALLBACK_URL:/user/csaillard/erlangen/oauth_callback +JUPYTERHUB_SERVER_NAME:erlangen +JUPYTERHUB_SERVICE_PREFIX:/user/csaillard/erlangen/ +JUPYTERHUB_USER:csaillard +JUPYTER_IMAGE:mltooling/ml-workspace-gpu +JUPYTER_IMAGE_SPEC:mltooling/ml-workspace-gpu +JUPYTER_SERVER_ROOT:/workspace +JUPYTER_SERVER_URL:http://0.0.0.0:8090/user/csaillard/erlangen/ +KMP_AFFINITY:granularity=fine,compact,1,0 +KMP_BLOCKTIME:0 +KMP_DUPLICATE_LIB_OK:True +KUBERNETES_PORT:tcp://10.96.0.1:443 +KUBERNETES_PORT_443_TCP:tcp://10.96.0.1:443 +KUBERNETES_PORT_443_TCP_ADDR:10.96.0.1 +KUBERNETES_PORT_443_TCP_PORT:443 +KUBERNETES_PORT_443_TCP_PROTO:tcp +KUBERNETES_SERVICE_HOST:10.96.0.1 +KUBERNETES_SERVICE_PORT:443 +KUBERNETES_SERVICE_PORT_HTTPS:443 +LANG:en_US.UTF-8 +LANGUAGE:en_US:en +LC_ALL:en_US.UTF-8 +LD_LIBRARY_PATH:/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/cuda/extras/CUPTI/lib64 +LESS:-R +LIBRARY_PATH:/usr/local/cuda/lib64/stubs +LINES:51 +LOGNAME:root +LSCOLORS:exfxcxdxbxegedabagacad +LS_COLORS: +MAX_NUM_THREADS:auto +MINICONDA_MD5:122c8c9beb51e124ab32a0fa6426c656 +MINICONDA_VERSION:4.9.2 +MKL_INTERFACE_LAYER:LP64,GNU +MKL_NUM_THREADS:32 +MKL_THREADING_LAYER:GNU +NB_USER:root +NCCL_VERSION:2.8.4 +NUMBA_NUM_THREADS:32 +NUMEXPR_MAX_THREADS:32 +NUMEXPR_NUM_THREADS:32 +NVIDIA_DRIVER_CAPABILITIES:compute,utility +NVIDIA_REQUIRE_CUDA:cuda>=11.2 brand=tesla,driver>=418,driver<419 brand=tesla,driver>=440,driver<441 driver>=450 +NVIDIA_VISIBLE_DEVICES:all +OLDPWD:/workspace/macs-ai +OMP_NUM_THREADS:32 +OPENBLAS_NUM_THREADS:32 +PAGER:less +PATH:/workspace/macs-ai/.venv/bin:/resources/.pyenv/plugins/pyenv-virtualenv/shims:/workspace/macs-ai/.venv/bin:/resources/.pyenv/plugins/pyenv-virtualenv/shims:/opt/conda/bin:/opt/conda/condabin:/resources/.pyenv/plugins/pyenv-virtualenv/shims:/usr/local/nvidia/bin:/usr/local/cuda/bin:/opt/node/bin:/root/.local/bin:/resources/.pyenv/shims:/resources/.pyenv/bin:/opt/conda/bin:/usr/local/openresty/nginx/sbin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/resources/.fzf/bin:/root/.fzf/bin +PROXY_API_PORT:tcp://10.99.174.61:8001 +PROXY_API_PORT_8001_TCP:tcp://10.99.174.61:8001 +PROXY_API_PORT_8001_TCP_ADDR:10.99.174.61 +PROXY_API_PORT_8001_TCP_PORT:8001 +PROXY_API_PORT_8001_TCP_PROTO:tcp +PROXY_API_SERVICE_HOST:10.99.174.61 +PROXY_API_SERVICE_PORT:8001 +PROXY_PUBLIC_PORT:tcp://10.101.179.86:80 +PROXY_PUBLIC_PORT_443_TCP:tcp://10.101.179.86:443 +PROXY_PUBLIC_PORT_443_TCP_ADDR:10.101.179.86 +PROXY_PUBLIC_PORT_443_TCP_PORT:443 +PROXY_PUBLIC_PORT_443_TCP_PROTO:tcp +PROXY_PUBLIC_PORT_80_TCP:tcp://10.101.179.86:80 +PROXY_PUBLIC_PORT_80_TCP_ADDR:10.101.179.86 +PROXY_PUBLIC_PORT_80_TCP_PORT:80 +PROXY_PUBLIC_PORT_80_TCP_PROTO:tcp +PROXY_PUBLIC_SERVICE_HOST:10.101.179.86 +PROXY_PUBLIC_SERVICE_PORT:80 +PROXY_PUBLIC_SERVICE_PORT_HTTP:80 +PROXY_PUBLIC_SERVICE_PORT_HTTPS:443 +PS1:(macs-ai-py3.8) +$(_user_host)${_current_dir} $(git_prompt_info) $(ruby_prompt_info) +%{%(!.${fg[white]}.${fg[white]})%}▶%{$reset_color%} +PWD:/workspace/macs-ai/macs_ai/engine/tiling +PYENV_ROOT:/resources/.pyenv +PYENV_SHELL:zsh +PYENV_VIRTUALENV_INIT:1 +PYTHON_PRETTY_ERRORS_ISATTY_ONLY:1 +PYTHON_VERSION:3.8.10 +PYXTERM_DIMENSIONS:80x25 +RESOURCES_PATH:/resources +SDKMAN_CANDIDATES_API:https://api.sdkman.io/2 +SDKMAN_CANDIDATES_DIR:/root/.sdkman/candidates +SDKMAN_DIR:/root/.sdkman +SDKMAN_PLATFORM:linuxx64 +SDKMAN_VERSION:5.11.7 +SHARED_LINKS_ENABLED:true +SHELL:/usr/bin/zsh +SHLVL:2 +SHUTDOWN_INACTIVE_KERNELS:true +SPARK_WORKER_CORES:32 +SSH_JUMPHOST_TARGET:ws-csaillard-mlhub-erlangen +SSL_RESOURCES_PATH:/resources/ssl +SUPERVISOR_ENABLED:1 +SUPERVISOR_GROUP_NAME:jupyter +SUPERVISOR_PROCESS_NAME:jupyter +SUPERVISOR_SERVER_URL:unix:///var/run/supervisor.sock +TBB_NUM_THREADS:32 +TERM:tmux-256color +TF_FORCE_GPU_ALLOW_GROWTH:true +TMUX:/tmp/tmux-0/default,7771,3 +TMUX_PANE:%7 +USER_GID:0 +VECLIB_MAXIMUM_THREADS:32 +VIRTUAL_ENV:/workspace/macs-ai/.venv +VNC_COL_DEPTH:24 +VNC_PW:vncpassword +VNC_RESOLUTION:1600x900 +WORKSPACE_BASE_URL:/user/csaillard/erlangen +WORKSPACE_FLAVOR:gpu +WORKSPACE_HOME:/workspace +WORKSPACE_PORT:8080 +WORKSPACE_VERSION:0.13.2 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT:tcp://10.98.81.8:8080 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT_8080_TCP:tcp://10.98.81.8:8080 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT_8080_TCP_ADDR:10.98.81.8 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT_8080_TCP_PORT:8080 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_SERVICE_HOST:10.98.81.8 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_SERVICE_PORT:8080 +WS_ADUPLAIX_MLHUB_PORT:tcp://10.103.37.32:8080 +WS_ADUPLAIX_MLHUB_PORT_8080_TCP:tcp://10.103.37.32:8080 +WS_ADUPLAIX_MLHUB_PORT_8080_TCP_ADDR:10.103.37.32 +WS_ADUPLAIX_MLHUB_PORT_8080_TCP_PORT:8080 +WS_ADUPLAIX_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_ADUPLAIX_MLHUB_SERVICE_HOST:10.103.37.32 +WS_ADUPLAIX_MLHUB_SERVICE_PORT:8080 +WS_AGRIMALDI_MLHUB_PORT:tcp://10.97.18.156:8080 +WS_AGRIMALDI_MLHUB_PORT_8080_TCP:tcp://10.97.18.156:8080 +WS_AGRIMALDI_MLHUB_PORT_8080_TCP_ADDR:10.97.18.156 +WS_AGRIMALDI_MLHUB_PORT_8080_TCP_PORT:8080 +WS_AGRIMALDI_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_AGRIMALDI_MLHUB_SERVICE_HOST:10.97.18.156 +WS_AGRIMALDI_MLHUB_SERVICE_PORT:8080 +WS_BGROSS_MLHUB_PORT:tcp://10.108.87.152:8080 +WS_BGROSS_MLHUB_PORT_8080_TCP:tcp://10.108.87.152:8080 +WS_BGROSS_MLHUB_PORT_8080_TCP_ADDR:10.108.87.152 +WS_BGROSS_MLHUB_PORT_8080_TCP_PORT:8080 +WS_BGROSS_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_BGROSS_MLHUB_SERVICE_HOST:10.108.87.152 +WS_BGROSS_MLHUB_SERVICE_PORT:8080 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT:tcp://10.107.155.225:8080 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT_8080_TCP:tcp://10.107.155.225:8080 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT_8080_TCP_ADDR:10.107.155.225 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT_8080_TCP_PORT:8080 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_SERVICE_HOST:10.107.155.225 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_SERVICE_PORT:8080 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT:tcp://10.109.107.166:8080 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT_8080_TCP:tcp://10.109.107.166:8080 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT_8080_TCP_ADDR:10.109.107.166 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT_8080_TCP_PORT:8080 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_SERVICE_HOST:10.109.107.166 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_SERVICE_PORT:8080 +WS_KSCHUTTE_MLHUB_GPU_PORT:tcp://10.105.54.95:8080 +WS_KSCHUTTE_MLHUB_GPU_PORT_8080_TCP:tcp://10.105.54.95:8080 +WS_KSCHUTTE_MLHUB_GPU_PORT_8080_TCP_ADDR:10.105.54.95 +WS_KSCHUTTE_MLHUB_GPU_PORT_8080_TCP_PORT:8080 +WS_KSCHUTTE_MLHUB_GPU_PORT_8080_TCP_PROTO:tcp +WS_KSCHUTTE_MLHUB_GPU_SERVICE_HOST:10.105.54.95 +WS_KSCHUTTE_MLHUB_GPU_SERVICE_PORT:8080 +WS_MHE_MLHUB_PORT:tcp://10.98.216.54:8080 +WS_MHE_MLHUB_PORT_8080_TCP:tcp://10.98.216.54:8080 +WS_MHE_MLHUB_PORT_8080_TCP_ADDR:10.98.216.54 +WS_MHE_MLHUB_PORT_8080_TCP_PORT:8080 +WS_MHE_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_MHE_MLHUB_SERVICE_HOST:10.98.216.54 +WS_MHE_MLHUB_SERVICE_PORT:8080 +WS_VCABELI_MLHUB_PORT:tcp://10.102.158.199:8080 +WS_VCABELI_MLHUB_PORT_8080_TCP:tcp://10.102.158.199:8080 +WS_VCABELI_MLHUB_PORT_8080_TCP_ADDR:10.102.158.199 +WS_VCABELI_MLHUB_PORT_8080_TCP_PORT:8080 +WS_VCABELI_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_VCABELI_MLHUB_SERVICE_HOST:10.102.158.199 +WS_VCABELI_MLHUB_SERVICE_PORT:8080 +WS_YFU_MLHUB_PORT:tcp://10.102.150.67:8080 +WS_YFU_MLHUB_PORT_8080_TCP:tcp://10.102.150.67:8080 +WS_YFU_MLHUB_PORT_8080_TCP_ADDR:10.102.150.67 +WS_YFU_MLHUB_PORT_8080_TCP_PORT:8080 +WS_YFU_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_YFU_MLHUB_SERVICE_HOST:10.102.150.67 +WS_YFU_MLHUB_SERVICE_PORT:8080 +XDG_CACHE_HOME:/root/.cache/ +XDG_RUNTIME_DIR:/tmp +ZSH:/root/.oh-my-zsh +_:/workspace/macs-ai/.venv/bin/python +_CE_CONDA: +_CE_M: +source: +2022-12-07 at 17:08:24 | ENV | **************************************************************************************************** +2022-12-07 at 17:08:24 | ENV | Collecting package versions of conda environment : /opt/conda/bin/conda + +2022-12-07 at 17:08:32 | ENV | # This file may be used to create an environment using: +# $ conda create --name --file +# platform: linux-64 +_libgcc_mutex=0.1=conda_forge +_openmp_mutex=4.5=1_llvm +absl-py=0.13.0=pypi_0 +addict=2.4.0=pypi_0 +agate=1.6.2=pypi_0 +agate-dbf=0.2.2=pypi_0 +agate-excel=0.2.3=pypi_0 +agate-sql=0.5.6=pypi_0 +aiohttp=3.7.4.post0=pypi_0 +albumentations=1.0.0=pypi_0 +alembic=1.4.1=pypi_0 +altair=4.1.0=pypi_0 +amply=0.1.4=py_0 +amqp=5.0.6=pypi_0 +aniso8601=7.0.0=pypi_0 +annoy=1.17.0=pypi_0 +ansiwrap=0.8.4=pypi_0 +antlr4-python3-runtime=4.8=pypi_0 +anyio=3.2.1=py38h578d9bd_0 +appdirs=1.4.4=pyh9f0ad1d_0 +apscheduler=3.6.3=pypi_0 +argcomplete=1.12.3=pypi_0 +argon2-cffi=20.1.0=py38h497a2fe_2 +arrow=1.1.1=pypi_0 +asgiref=3.4.1=pypi_0 +astor=0.8.1=pypi_0 +astroid=2.5.6=pypi_0 +astunparse=1.6.3=pypi_0 +async-generator=1.10=pypi_0 +async-timeout=3.0.1=pypi_0 +attrs=21.2.0=pyhd8ed1ab_0 +audioread=2.1.9=pypi_0 +augmentor=0.2.8=pypi_0 +autocfg=0.0.8=pypi_0 +autocommand=2.2.1=pypi_0 +autograd=1.3=pypi_0 +autograd-gamma=0.5.0=pypi_0 +autokeras=1.0.15=pypi_0 +automat=20.2.0=pypi_0 +autopep8=1.5.7=pypi_0 +babel=2.9.1=pyh44b312d_0 +backcall=0.2.0=pyh9f0ad1d_0 +backports=1.0=py_2 +backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0 +banal=1.0.6=pypi_0 +bandit=1.7.0=pypi_0 +base58=2.1.0=pypi_0 +bayesian-optimization=1.2.0=pypi_0 +bcrypt=3.2.0=pypi_0 +beautifulsoup4=4.9.3=pyhb0f4dca_0 +better-exceptions=0.3.3=pypi_0 +billiard=3.6.4.0=pypi_0 +black=21.6b0=pypi_0 +blas=2.109=mkl +blas-devel=3.9.0=9_mkl +blaze=0.10.1=pypi_0 +bleach=3.3.0=pyh44b312d_0 +blessings=1.7=pypi_0 +blinker=1.4=pypi_0 +blis=0.7.4=pypi_0 +bokeh=2.3.3=pypi_0 +boltons=21.0.0=pypi_0 +boost=1.76.0=py38hfc89cab_0 +boost-cpp=1.76.0=h312852a_1 +boto3=1.17.101=pypi_0 +botocore=1.20.110=pypi_0 +bottle=0.12.19=pypi_0 +bottleneck=1.3.2=pypi_0 +bpytop=1.0.67=pypi_0 +bqplot=0.12.29=pypi_0 +branca=0.4.2=pypi_0 +brotlipy=0.7.0=py38h497a2fe_1001 +bs4=0.0.1=pypi_0 +bzip2=1.0.8=h7f98852_4 +c-ares=1.17.1=h7f98852_1 +ca-certificates=2022.10.11=h06a4308_0 +cachecontrol=0.12.6=pypi_0 +cachetools=4.2.2=pypi_0 +cachy=0.3.0=pypi_0 +cassandra-driver=3.25.0=pypi_0 +catalogue=2.0.4=pypi_0 +category-encoders=2.2.2=pypi_0 +celery=5.1.1=pypi_0 +cerberus=1.3.4=pypi_0 +certifi=2022.9.24=pyhd8ed1ab_0 +certipy=0.1.3=pypi_0 +cffi=1.14.5=pypi_0 +chainer=7.8.0=pypi_0 +chardet=4.0.0=py38h578d9bd_1 +cleo=0.8.1=pypi_0 +click=7.1.2=pypi_0 +click-didyoumean=0.0.3=pypi_0 +click-plugins=1.1.1=pypi_0 +click-repl=0.2.0=pypi_0 +click-spinner=0.1.10=pypi_0 +cliff=3.8.0=pypi_0 +clikit=0.6.2=pypi_0 +cloudant=2.14.0=pypi_0 +cloudpickle=1.6.0=pypi_0 +cma=3.1.0=pypi_0 +cmaes=0.8.2=pypi_0 +cmake=3.20.4=pypi_0 +cmd2=2.1.2=pypi_0 +coincbc=2.10.5=hcee13e7_1 +colorama=0.4.4=pypi_0 +colorcet=2.0.6=pypi_0 +colorlog=5.0.1=pypi_0 +commonmark=0.9.1=pypi_0 +conda=4.10.3=py38h578d9bd_0 +conda-build=3.21.4=py38h578d9bd_0 +conda-package-handling=1.7.3=py38h497a2fe_0 +configargparse=1.5.1=pyhd8ed1ab_0 +configobj=5.0.6=pypi_0 +confuse=1.5.0=pypi_0 +connection_pool=0.0.3=pyhd3deb0d_0 +constantly=15.1.0=pypi_0 +coverage=5.5=pypi_0 +crashtest=0.3.1=pypi_0 +crc32c=2.2.post0=pypi_0 +cryptography=3.4.7=py38ha5dfef3_0 +cssselect=1.1.0=pypi_0 +cssutils=2.3.0=pypi_0 +csvkit=1.0.5=pypi_0 +cudatoolkit=11.2.72=h2bc3f7f_0 +cupy-cuda112=9.2.0=pypi_0 +cx-oracle=8.2.1=pypi_0 +cycler=0.10.0=pypi_0 +cymem=2.0.5=pypi_0 +cysignals=1.10.3=pypi_0 +cython=0.29.23=pypi_0 +cytoolz=0.11.0=pypi_0 +dask=2021.6.2=pypi_0 +dask-glm=0.2.0=pypi_0 +dask-ml=1.9.0=pypi_0 +databricks-cli=0.14.3=pypi_0 +dataclasses=0.6=pypi_0 +dataset=1.5.0=pypi_0 +datashape=0.5.2=pypi_0 +datasketch=1.5.3=pypi_0 +datrie=0.8.2=py38h497a2fe_2 +dbfread=2.0.7=pypi_0 +deap=1.3.1=pypi_0 +debugpy=1.3.0=py38h709712a_0 +decorator=4.4.2=pypi_0 +defusedxml=0.7.1=pyhd8ed1ab_0 +deprecated=1.2.12=pypi_0 +deprecation=2.1.0=pypi_0 +dgl=0.6.1=pypi_0 +diamond=4.0.515=pypi_0 +dill=0.3.4=pypi_0 +distlib=0.3.2=pypi_0 +distributed=2021.6.2=pypi_0 +dm-sonnet=2.0.0=pypi_0 +dm-tree=0.1.6=pypi_0 +docker=5.0.0=pypi_0 +docopt=0.6.2=pypi_0 +docutils=0.17.1=py38h578d9bd_0 +dparse=0.5.1=pypi_0 +eagerpy=0.29.0=pypi_0 +edward=1.3.5=pypi_0 +einops=0.3.0=pypi_0 +elasticsearch=7.13.2=pypi_0 +elasticsearch-dsl=7.3.0=pypi_0 +eli5=0.11.0=pypi_0 +empyrical=0.5.5=pypi_0 +en-core-web-sm=3.0.0=pypi_0 +entrypoints=0.3=pyhd8ed1ab_1003 +et-xmlfile=1.1.0=pypi_0 +fabric=2.6.0=pypi_0 +facets-overview=1.0.0=pypi_0 +fairseq=0.10.2=pypi_0 +faiss=1.7.0=py38h9ff9125_8_cpu +faiss-cpu=1.7.0=h718b53a_8 +fake-useragent=0.1.11=pypi_0 +faker=8.8.2=pypi_0 +fastai=2.4=pypi_0 +fastapi=0.65.2=pypi_0 +fastcore=1.3.20=pypi_0 +fastprogress=1.0.0=pypi_0 +fastrlock=0.6=pypi_0 +fasttext=0.9.2=pypi_0 +featuretools=0.25.0=pypi_0 +filelock=3.0.12=pyh9f0ad1d_0 +fire=0.4.0=pypi_0 +flake8=3.9.2=pypi_0 +flashtext=2.7=pypi_0 +flask=2.0.1=pypi_0 +flask-cors=3.0.10=pypi_0 +flatbuffers=1.12=pypi_0 +folium=0.12.1=pypi_0 +foolbox=3.3.1=pypi_0 +formulaic=0.2.4=pypi_0 +freetype-py=2.2.0=pypi_0 +fs=2.4.13=pypi_0 +fsspec=2021.7.0=pypi_0 +ftfy=6.0.3=pypi_0 +future=0.18.2=pypi_0 +fuzzywuzzy=0.18.0=pypi_0 +gast=0.4.0=pypi_0 +gensim=4.0.1=pypi_0 +geocoder=1.38.1=pypi_0 +geographiclib=1.52=pypi_0 +geojson=2.5.0=pypi_0 +geomet=0.2.1.post1=pypi_0 +geoplotlib=0.3.2=pypi_0 +geopy=2.1.0=pypi_0 +gin-config=0.4.0=pypi_0 +gitdb=4.0.7=pyhd3eb1b0_0 +gitpython=3.1.18=pyhd8ed1ab_0 +glances=3.1.7=pypi_0 +glob2=0.7=py_0 +gluoncv=0.10.3=pypi_0 +gluonnlp=0.10.0=pypi_0 +google-api-core=1.31.0=pypi_0 +google-api-python-client=2.13.0=pypi_0 +google-auth=1.32.1=pypi_0 +google-auth-httplib2=0.1.0=pypi_0 +google-auth-oauthlib=0.4.4=pypi_0 +google-cloud-core=1.7.1=pypi_0 +google-cloud-storage=1.39.0=pypi_0 +google-crc32c=1.1.2=pypi_0 +google-images-download=2.8.0=pypi_0 +google-pasta=0.2.0=pypi_0 +google-resumable-media=1.3.1=pypi_0 +googleapis-common-protos=1.53.0=pypi_0 +googledrivedownloader=0.4=pypi_0 +gpflow=2.2.1=pypi_0 +gpustat=0.6.0=pypi_0 +gputil=1.4.0=pypi_0 +gpytorch=1.5.0=pypi_0 +graphene=2.1.8=pypi_0 +graphql-core=2.3.2=pypi_0 +graphql-relay=2.0.1=pypi_0 +greenlet=1.1.0=pypi_0 +grip=4.5.2=pypi_0 +grpcio=1.34.1=pypi_0 +gunicorn=20.1.0=pypi_0 +gym=0.18.3=pypi_0 +h11=0.12.0=pypi_0 +h2=3.2.0=pypi_0 +h5py=3.1.0=pypi_0 +heapdict=1.0.1=pypi_0 +holoviews=1.14.4=pypi_0 +hpack=3.0.0=pypi_0 +html5lib=1.1=pypi_0 +htmlmin=0.1.12=pypi_0 +httpie=2.4.0=pypi_0 +httplib2=0.19.1=pypi_0 +huggingface-hub=0.0.12=pypi_0 +hydra-core=1.1.0=pypi_0 +hyperframe=5.2.0=pypi_0 +hyperlink=21.0.0=pypi_0 +hyperopt=0.2.5=pypi_0 +icu=68.1=h58526e2_0 +idna=2.10=pyh9f0ad1d_0 +imagehash=4.2.0=pypi_0 +imageio=2.9.0=pypi_0 +imbalanced-learn=0.8.0=pypi_0 +imgaug=0.4.0=pypi_0 +importlib-metadata=4.6.1=py38h578d9bd_0 +importlib-resources=5.2.0=pypi_0 +imutils=0.5.4=pypi_0 +incremental=21.3.0=pypi_0 +inflect=5.3.0=pypi_0 +influxdb=5.3.1=pypi_0 +iniconfig=1.1.1=pypi_0 +interface-meta=1.2.3=pypi_0 +invoke=1.6.0=pypi_0 +ipydatawidgets=4.2.0=pypi_0 +ipyexperiments=0.1.26=pypi_0 +ipykernel=5.5.5=pypi_0 +ipympl=0.7.0=pypi_0 +ipyparallel=6.3.0=pypi_0 +ipython=7.24.1=py38hd0cf306_0 +ipython_genutils=0.2.0=py_1 +ipywidgets=7.6.3=pypi_0 +isodate=0.6.0=pypi_0 +isort=5.9.1=pypi_0 +itemadapter=0.2.0=pypi_0 +itemloaders=1.0.4=pypi_0 +itsdangerous=2.0.1=pypi_0 +jax=0.2.16=pypi_0 +jaxlib=0.1.68+cuda111=pypi_0 +jedi=0.17.2=pypi_0 +jeepney=0.7.0=pypi_0 +jellyfish=0.8.2=pypi_0 +jinja2=3.0.1=pyhd8ed1ab_0 +jmespath=0.10.0=pypi_0 +joblib=1.0.1=pyhd8ed1ab_0 +json5=0.9.5=pyh9f0ad1d_0 +jsonpickle=2.0.0=pypi_0 +jsonschema=3.2.0=pyhd8ed1ab_3 +jupyter=1.0.0=pypi_0 +jupyter-client=6.2.0=pypi_0 +jupyter-console=6.4.0=pypi_0 +jupyter-contrib-core=0.3.3=pypi_0 +jupyter-contrib-nbextensions=0.5.1=pypi_0 +jupyter-highlight-selected-word=0.2.0=pypi_0 +jupyter-kernel-gateway=2.5.0=pypi_0 +jupyter-latex-envs=1.4.6=pypi_0 +jupyter-lsp=1.3.0=pypi_0 +jupyter-nbextensions-configurator=0.4.1=pypi_0 +jupyter-packaging=0.10.3=pypi_0 +jupyter-resource-usage=0.6.0=pypi_0 +jupyter-server-mathjax=0.2.3=pypi_0 +jupyter-server-proxy=3.0.2=pypi_0 +jupyter-telemetry=0.1.0=pypi_0 +jupyter-tensorboard=0.2.1=pypi_0 +jupyter-tooling-extension=0.1=pypi_0 +jupyter_core=4.7.1=py38h578d9bd_0 +jupyter_server=1.9.0=pyhd8ed1ab_0 +jupyterhub=1.4.1=pypi_0 +jupyterlab=3.0.16=pyhd8ed1ab_0 +jupyterlab-code-formatter=1.4.10=pypi_0 +jupyterlab-git=0.30.1=pypi_0 +jupyterlab-lsp=3.7.0=pypi_0 +jupyterlab-tensorboard=0.2.1=pypi_0 +jupyterlab-widgets=1.0.0=pypi_0 +jupyterlab_server=2.6.1=pyhd8ed1ab_0 +jupytext=1.11.3=pypi_0 +kafka-python=2.0.2=pypi_0 +kaggle=1.5.12=pypi_0 +keract=4.5.0=pypi_0 +keras=2.4.3=pypi_0 +keras-applications=1.0.8=pypi_0 +keras-nightly=2.5.0.dev2021032900=pypi_0 +keras-preprocessing=1.1.2=pypi_0 +keras-rl=0.4.2=pypi_0 +keras-tuner=1.0.3=pypi_0 +keras-vis=0.4.1=pypi_0 +keyring=21.8.0=pypi_0 +kiwisolver=1.3.1=pypi_0 +kmodes=0.11.0=pypi_0 +knockknock=0.1.8.1=pypi_0 +kombu=5.1.0=pypi_0 +krb5=1.19.1=hcc1bbae_0 +kt-legacy=1.0.3=pypi_0 +langid=1.1.6=pypi_0 +lazy-object-proxy=1.6.0=pypi_0 +lazycluster=0.2.4=pypi_0 +lckr-jupyterlab-variableinspector=3.0.9=pypi_0 +ld_impl_linux-64=2.36.1=hea4e1c9_1 +leather=0.3.3=pypi_0 +libarchive=3.5.1=hccf745f_2 +libblas=3.9.0=9_mkl +libcblas=3.9.0=9_mkl +libcurl=7.77.0=h2574ce0_0 +libedit=3.1.20210216=h27cfd23_1 +libev=4.33=h516909a_1 +libfaiss=1.7.0=hb573701_8_cpu +libfaiss-avx2=1.7.0=h1234567_8_cpu +libffi=3.3=h58526e2_2 +libgcc-ng=9.3.0=h2828fa1_19 +libgfortran-ng=9.3.0=hff62375_19 +libgfortran5=9.3.0=hff62375_19 +libgpuarray=0.7.6=h7f98852_1003 +libiconv=1.16=h516909a_0 +libjpeg-turbo=2.1.0=h7f98852_0 +liblapack=3.9.0=9_mkl +liblapacke=3.9.0=9_mkl +liblief=0.11.5=h9c3ff4c_0 +libnghttp2=1.43.0=h812cca2_0 +libopenblas=0.3.15=pthreads_h8fe5266_1 +librosa=0.8.1=pypi_0 +libsodium=1.0.18=h36c2ea0_1 +libsolv=0.7.19=h780b84a_5 +libssh2=1.9.0=ha56f1ee_6 +libstdcxx-ng=9.3.0=h6de172a_19 +libuv=1.40.0=h7f98852_0 +libxml2=2.9.12=h72842e0_0 +lifelines=0.26.0=pypi_0 +lightfm=1.16=pypi_0 +lightgbm=3.2.1=pypi_0 +lime=0.2.0.1=pypi_0 +line-profiler=3.3.0=pypi_0 +llvm-openmp=11.1.0=h4bd325d_1 +llvmlite=0.36.0=pypi_0 +lmdb=1.2.1=pypi_0 +lml=0.1.0=pypi_0 +locket=0.2.1=pypi_0 +lockfile=0.12.2=pypi_0 +loguru=0.5.3=pypi_0 +luigi=3.0.3=pypi_0 +lxml=4.6.3=pypi_0 +lz4-c=1.9.3=h9c3ff4c_0 +lzo=2.10=h516909a_1000 +mako=1.1.4=pyh44b312d_0 +mamba=0.15.0=py38h2aa5da1_0 +markdown=3.3.4=pypi_0 +markdown-it-py=1.1.0=pypi_0 +markupsafe=2.0.1=py38h497a2fe_0 +marshmallow=3.12.1=pypi_0 +matplotlib=3.4.2=pypi_0 +matplotlib-inline=0.1.2=pyhd8ed1ab_2 +matrix-client=0.3.2=pypi_0 +mccabe=0.6.1=pypi_0 +mdit-py-plugins=0.2.8=pypi_0 +mechanicalsoup=1.1.0=pypi_0 +memory-profiler=0.58.0=pypi_0 +mesh-tensorflow=0.1.19=pypi_0 +metric-learn=0.6.2=pypi_0 +micawber=0.5.3=pypi_0 +minio=7.0.4=pypi_0 +missingno=0.5.0=pypi_0 +mistune=0.8.4=py38h497a2fe_1004 +mkl=2021.3.0=h726a3e6_557 +mkl-devel=2021.3.0=ha770c72_558 +mkl-include=2021.3.0=h726a3e6_557 +mkl-service=2.4.0=py38h497a2fe_0 +mkldnn=0.16.1=0 +mlflow=1.18.0=pypi_0 +mlxtend=0.18.0=pypi_0 +mmdnn=0.3.1=pypi_0 +mock=4.0.3=pypi_0 +mongo-connector=3.1.1=pypi_0 +motor=2.4.0=pypi_0 +mpmath=1.2.1=pypi_0 +mrjob=0.7.4=pypi_0 +msgpack=1.0.2=pypi_0 +msgpack-numpy=0.4.7.1=pypi_0 +multidict=5.1.0=py38h497a2fe_1 +multimethod=1.4=pypi_0 +multipledispatch=0.6.0=pypi_0 +multiprocess=0.70.12.2=pypi_0 +multitasking=0.0.9=pypi_0 +murmurhash=1.0.5=pypi_0 +mxnet-cu112=1.8.0.post0=pypi_0 +mypy=0.910=pypi_0 +mypy-extensions=0.4.3=pypi_0 +mysqlclient=2.0.3=pypi_0 +nbclassic=0.3.1=pyhd8ed1ab_1 +nbclient=0.5.3=pypi_0 +nbconvert=5.6.1=py38_0 +nbdime=3.1.0=pypi_0 +nbformat=5.1.3=pyhd8ed1ab_0 +nbval=0.9.6=pypi_0 +ncurses=6.2=h58526e2_4 +neo4j-driver=4.3.1=pypi_0 +nest-asyncio=1.5.1=pypi_0 +netifaces=0.11.0=pypi_0 +networkx=2.5.1=pypi_0 +nevergrad=0.4.3.post4=pypi_0 +ninja=1.10.2=h4bd325d_0 +nltk=3.6.2=pypi_0 +nodejs=16.13.1=hb931c9a_0 +nose=1.3.7=pypi_0 +nose2=0.10.0=pypi_0 +notebook=6.4.0=pyha770c72_0 +nox=2021.6.12=pypi_0 +numba=0.53.1=pypi_0 +numexpr=2.7.3=py38h51da96c_0 +numpy=1.19.5=py38h18fd61f_1 +nvidia-ml-py=11.450.51=pypi_0 +nvidia-ml-py3=7.352.0=pypi_0 +oauth2client=4.1.3=pypi_0 +oauthlib=3.1.1=pypi_0 +odo=0.5.0=pypi_0 +omegaconf=2.1.0=pypi_0 +onnx=1.9.0=pypi_0 +onnxruntime-gpu=1.8.0=pypi_0 +onnxruntime-training=1.8.0=pypi_0 +opencv-python=4.5.1.48=pypi_0 +opencv-python-headless=4.5.1.48=pypi_0 +openpyxl=3.0.7=pypi_0 +openssl=1.1.1s=h7f8727e_0 +opt-einsum=3.3.0=pypi_0 +optuna=2.8.0=pypi_0 +packaging=20.9=pypi_0 +pamela=1.0.0=pypi_0 +pandarallel=1.5.2=pypi_0 +pandas=1.2.5=pypi_0 +pandas-datareader=0.9.0=pypi_0 +pandas-profiling=2.13.0=pypi_0 +pandas-summary=0.0.7=pypi_0 +pandasql=0.7.3=pypi_0 +pandoc=2.14.0.3=h7f98852_0 +pandocfilters=1.4.2=py_1 +panel=0.11.3=pypi_0 +papermill=2.3.3=pypi_0 +param=1.11.1=pypi_0 +paramiko=2.7.2=pypi_0 +parse=1.19.0=pypi_0 +parsedatetime=2.6=pypi_0 +parsel=1.6.0=pypi_0 +parso=0.7.1=pypi_0 +partd=1.2.0=pypi_0 +pastel=0.2.1=pypi_0 +patchelf=0.11=he1b5a44_0 +path=16.0.0=pypi_0 +path-and-address=2.0.1=pypi_0 +path-py=12.5.0=pypi_0 +pathlib2=2.3.6=pypi_0 +pathos=0.2.8=pypi_0 +pathspec=0.8.1=pypi_0 +pathy=0.6.0=pypi_0 +patsy=0.5.1=pypi_0 +pbr=5.6.0=pypi_0 +peewee=3.14.4=pypi_0 +pep517=0.10.0=pypi_0 +petl=1.7.4=pypi_0 +pexpect=4.8.0=pyh9f0ad1d_2 +phik=0.11.2=pypi_0 +pickledb=0.9.2=pypi_0 +pickleshare=0.7.5=py_1003 +pillow=8.2.0=pypi_0 +pip=21.1.3=pyhd8ed1ab_0 +pip-tools=6.2.0=pypi_0 +pipdeptree=2.0.0=pypi_0 +pipenv=2021.5.29=pypi_0 +pipreqs=0.4.10=pypi_0 +pipx=0.16.3=pypi_0 +pivottablejs=0.9.0=pypi_0 +pkginfo=1.7.1=pyhd8ed1ab_0 +plotly=5.0.0=pypi_0 +pluggy=0.13.1=pypi_0 +poetry=1.1.7=pypi_0 +poetry-core=1.0.3=pypi_0 +pooch=1.4.0=pypi_0 +portalocker=2.3.0=pypi_0 +pox=0.3.0=pypi_0 +ppft=1.6.6.4=pypi_0 +premailer=3.9.0=pypi_0 +preshed=3.0.5=pypi_0 +pretty-errors=1.2.22=pypi_0 +prettytable=2.1.0=pypi_0 +priority=1.3.0=pypi_0 +progressbar2=3.53.1=pypi_0 +prometheus-flask-exporter=0.18.2=pypi_0 +prometheus_client=0.11.0=pyhd8ed1ab_0 +promise=2.3=pypi_0 +prompt-toolkit=3.0.19=pyha770c72_0 +protego=0.1.16=pypi_0 +protobuf=3.17.3=pypi_0 +protobuf3-to-dict=0.1.5=pypi_0 +psutil=5.8.0=py38h497a2fe_1 +psycopg2=2.9.1=pypi_0 +ptyprocess=0.7.0=pyhd3deb0d_0 +pulp=2.4=py38h578d9bd_0 +py=1.10.0=pypi_0 +py-cpuinfo=8.0.0=pypi_0 +py-lief=0.11.5=py38h709712a_0 +py-spy=0.3.7=pypi_0 +py3nvml=0.2.6=pypi_0 +pyahocorasick=1.4.2=pypi_0 +pyaml=20.4.0=pypi_0 +pyarrow=4.0.1=pypi_0 +pyasn1=0.4.8=pypi_0 +pyasn1-modules=0.2.8=pypi_0 +pybind11=2.6.2=pypi_0 +pycodestyle=2.7.0=pypi_0 +pycosat=0.6.3=py38h497a2fe_1006 +pycparser=2.20=pyh9f0ad1d_2 +pyct=0.4.8=pypi_0 +pycuda=2021.1=pypi_0 +pydantic=1.7.4=pypi_0 +pydeck=0.6.2=pypi_0 +pydispatcher=2.0.5=pypi_0 +pydocstyle=6.1.1=pypi_0 +pydub=0.25.1=pypi_0 +pyecharts=1.9.0=pypi_0 +pyee=8.1.0=pypi_0 +pyexcel-io=0.6.4=pypi_0 +pyexcel-xlsx=0.6.0=pypi_0 +pyflakes=2.3.1=pypi_0 +pyfunctional=1.4.3=pypi_0 +pyglet=1.5.15=pypi_0 +pygments=2.9.0=pyhd8ed1ab_0 +pygpu=0.7.6=py38h5c078b8_1002 +pyhdb=0.3.4=pypi_0 +pyicu=2.7.4=pypi_0 +pyinstrument=3.4.2=pypi_0 +pyinstrument-cext=0.2.4=pypi_0 +pyjwt=1.7.1=pypi_0 +pylama=7.7.1=pypi_0 +pylev=1.4.0=pypi_0 +pylint=2.8.3=pypi_0 +pyls-black=0.4.7=pypi_0 +pyls-isort=0.2.2=pypi_0 +pyls-mypy=0.1.8=pypi_0 +pymdstat=0.4.2=pypi_0 +pymongo=3.11.4=pypi_0 +pymysql=1.0.2=pypi_0 +pynacl=1.4.0=pypi_0 +pynndescent=0.5.4=pypi_0 +pynvml=11.0.0=pypi_0 +pyod=0.8.9=pypi_0 +pyodbc=4.0.30=pypi_0 +pyopenssl=20.0.1=pyhd8ed1ab_0 +pyparsing=2.4.7=pyh9f0ad1d_0 +pyperclip=1.8.2=pypi_0 +pyphen=0.11.0=pypi_0 +pyppeteer=0.2.5=pypi_0 +pyquery=1.4.3=pypi_0 +pyro-api=0.1.2=pypi_0 +pyro-ppl=1.6.0=pypi_0 +pyrsistent=0.17.3=py38h497a2fe_2 +pysocks=1.7.1=py38h578d9bd_3 +pyte=0.8.0=pypi_0 +pytesseract=0.3.7=pypi_0 +pytest=6.2.4=pypi_0 +python=3.8.10=h49503c6_1_cpython +python-crontab=2.5.1=pypi_0 +python-daemon=2.3.0=pypi_0 +python-dateutil=2.8.1=py_0 +python-editor=1.0.4=pypi_0 +python-graphviz=0.8.4=pypi_0 +python-json-logger=2.0.1=pypi_0 +python-jsonrpc-server=0.4.0=pypi_0 +python-language-server=0.36.2=pypi_0 +python-libarchive-c=3.1=py38h578d9bd_0 +python-louvain=0.15=pypi_0 +python-lsp-jsonrpc=1.0.0=pypi_0 +python-lsp-server=1.1.0=pypi_0 +python-magic=0.4.24=pypi_0 +python-slugify=5.0.2=pypi_0 +python-telegram-bot=13.7=pypi_0 +python-utils=2.5.6=pypi_0 +python_abi=3.8=2_cp38 +pythreejs=2.3.0=pypi_0 +pytimeparse=1.1.8=pypi_0 +pytools=2021.2.7=pypi_0 +pytorch-ignite=0.4.5=pypi_0 +pytorch-nlp=0.5.0=pypi_0 +pytz=2021.1=pyhd8ed1ab_0 +pyviz-comms=2.1.0=pypi_0 +pywavelets=1.1.1=pypi_0 +pyyaml=5.4.1=py38h497a2fe_0 +pyzmq=22.1.0=py38h2035c66_0 +qgrid=1.3.1=pypi_0 +qtconsole=5.1.1=pypi_0 +qtpy=1.9.0=pypi_0 +querystring-parser=1.2.4=pypi_0 +queuelib=1.6.1=pypi_0 +ranger-fm=1.9.3=pypi_0 +ratelim=0.1.6=pypi_0 +ratelimiter=1.2.0=py_1002 +rdflib=5.0.0=pypi_0 +readline=8.1=h46c0cb4_0 +readme-renderer=29.0=pypi_0 +redis=3.5.3=pypi_0 +regex=2021.4.4=pypi_0 +remote-ikernel=0.4.6=pypi_0 +reproc=14.2.1=h36c2ea0_0 +reproc-cpp=14.2.1=h58526e2_0 +requests=2.25.1=pyhd3deb0d_0 +requests-html=0.10.0=pypi_0 +requests-oauthlib=1.3.0=pypi_0 +requests-toolbelt=0.9.1=pypi_0 +requests-unixsocket=0.2.0=py_0 +resampy=0.2.2=pypi_0 +rfc3986=1.5.0=pypi_0 +rich=10.4.0=pypi_0 +ripgrep=13.0.0=habb4d0f_0 +rope=0.19.0=pypi_0 +rsa=4.7.2=pypi_0 +ruamel-yaml=0.17.10=pypi_0 +ruamel-yaml-clib=0.2.6=pypi_0 +ruamel_yaml=0.15.80=py38h497a2fe_1004 +rx=1.6.1=pypi_0 +s3transfer=0.4.2=pypi_0 +sacrebleu=1.5.1=pypi_0 +sacremoses=0.0.45=pypi_0 +safety=1.10.3=pypi_0 +sagemaker=2.47.1=pypi_0 +scalene=1.3.6=pypi_0 +scikit-cuda=0.5.3=pypi_0 +scikit-image=0.18.1=pypi_0 +scikit-learn=0.24.2=py38hdc147b9_0 +scikit-optimize=0.8.1=pypi_0 +scikit-plot=0.3.7=pypi_0 +scikit-surprise=1.1.1=pypi_0 +scipy=1.7.0=py38h7b17777_0 +scrapy=2.5.0=pypi_0 +seaborn=0.11.1=pypi_0 +secretstorage=3.3.1=pypi_0 +selenium=3.141.0=pypi_0 +send2trash=1.7.1=pyhd8ed1ab_0 +sentencepiece=0.1.96=pypi_0 +service-identity=21.1.0=pypi_0 +setuptools=49.6.0=py38h578d9bd_3 +shap=0.39.0=pypi_0 +shapely=1.7.1=pypi_0 +shellingham=1.4.0=pypi_0 +simpervisor=0.4=pypi_0 +simplejson=3.17.2=pypi_0 +six=1.15.0=pypi_0 +sklearn-pandas=2.2.0=pypi_0 +skorch=0.10.0=pypi_0 +slicer=0.0.7=pypi_0 +smart_open=5.1.0=pyhd8ed1ab_1 +smdebug-rulesconfig=1.0.1=pypi_0 +smmap=4.0.0=pyhd8ed1ab_1 +snakemake-minimal=6.5.3=pyhdfd78af_0 +sniffio=1.2.0=py38h578d9bd_1 +snowballstemmer=2.1.0=pypi_0 +sortedcontainers=2.4.0=pypi_0 +soundfile=0.10.3.post1=pypi_0 +soupsieve=2.2.1=pypi_0 +spacy=3.0.6=pypi_0 +spacy-legacy=3.0.8=pypi_0 +speedtorch=0.1.6=pypi_0 +spektral=1.0.6=pypi_0 +sqlalchemy=1.4.19=pypi_0 +sqlite=3.36.0=h9cd32fc_0 +sqlparse=0.4.1=pypi_0 +srsly=2.4.1=pypi_0 +starlette=0.14.2=pypi_0 +statsmodels=0.12.2=pypi_0 +stevedore=3.3.0=pypi_0 +stop-words=2018.7.23=pypi_0 +stopit=1.1.2=py_0 +stormssh=0.7.0=pypi_0 +streamlit=0.83.0=pypi_0 +streamz=0.6.2=pypi_0 +sympy=1.8=pypi_0 +tables=3.6.1=pypi_0 +tablib=3.0.0=pypi_0 +tabulate=0.8.9=pyhd8ed1ab_0 +tangled-up-in-unicode=0.1.0=pypi_0 +tbb=2021.3.0=h4bd325d_0 +tblib=1.7.0=pypi_0 +tenacity=6.3.1=pypi_0 +tensorboard=2.5.0=pypi_0 +tensorboard-data-server=0.6.1=pypi_0 +tensorboard-plugin-wit=1.8.0=pypi_0 +tensorboardx=2.3=pypi_0 +tensorflow-addons=0.13.0=pypi_0 +tensorflow-datasets=4.3.0=pypi_0 +tensorflow-estimator=2.5.0=pypi_0 +tensorflow-gpu=2.5.0=pypi_0 +tensorflow-hub=0.12.0=pypi_0 +tensorflow-metadata=1.1.0=pypi_0 +tensorflow-model-optimization=0.6.0=pypi_0 +tensorflow-probability=0.13.0=pypi_0 +tensorflow-text=2.5.0=pypi_0 +tensorflowonspark=2.2.4=pypi_0 +tensorlayer=2.2.3=pypi_0 +tensorly=0.6.0=pypi_0 +tensorpack=0.11=pypi_0 +termcolor=1.1.0=pypi_0 +terminado=0.10.1=py38h578d9bd_0 +tesserocr=2.5.2=pypi_0 +testpath=0.5.0=pyhd8ed1ab_0 +text-unidecode=1.3=pypi_0 +textacy=0.11.0=pypi_0 +textblob=0.15.3=pypi_0 +textdistance=4.2.1=pypi_0 +textwrap3=0.9.2=pypi_0 +tf-explain=0.3.0=pypi_0 +tflearn=0.5.0=pypi_0 +theano=1.0.5=pypi_0 +thefuck=3.31=pypi_0 +thinc=8.0.6=pypi_0 +threadpoolctl=2.2.0=pyh8a188c0_0 +tifffile=2021.7.2=pypi_0 +tinydb=4.5.0=pypi_0 +tk=8.6.10=h21135ba_1 +tokenizers=0.10.3=pypi_0 +toml=0.10.2=pypi_0 +tomlkit=0.7.2=pypi_0 +toolz=0.11.1=pypi_0 +toposort=1.6=pyhd8ed1ab_0 +torch=1.9.0+cu111=pypi_0 +torch-geometric=1.7.2=pypi_0 +torchaudio=0.9.0=pypi_0 +torchsummary=1.5.1=pypi_0 +torchtext=0.10.0=pypi_0 +torchvision=0.10.0+cu111=pypi_0 +tornado=6.1=py38h497a2fe_1 +tox=3.23.1=pypi_0 +tpot=0.11.7=pypi_0 +tqdm=4.61.1=pypi_0 +traitlets=5.0.5=py_0 +traittypes=0.2.1=pypi_0 +transformers=4.8.1=pypi_0 +tslearn=0.5.1.0=pypi_0 +twilio=6.61.0=pypi_0 +twine=3.4.1=pypi_0 +twisted=21.2.0=pypi_0 +typeguard=2.12.1=pypi_0 +typer=0.3.2=pypi_0 +typing-extensions=3.7.4=pypi_0 +tzlocal=2.1=pypi_0 +ujson=4.0.2=pypi_0 +umap-learn=0.5.1=pypi_0 +update-checker=0.18.0=pypi_0 +uritemplate=3.0.1=pypi_0 +urllib3=1.26.6=pyhd8ed1ab_0 +userpath=1.6.0=pypi_0 +uvicorn=0.14.0=pypi_0 +validators=0.18.2=pypi_0 +vega=3.5.0=pypi_0 +vega-datasets=0.9.0=pypi_0 +vine=5.0.0=pypi_0 +virtualenv=20.4.7=pypi_0 +virtualenv-clone=0.5.4=pypi_0 +virtualenvwrapper=4.8.4=pypi_0 +visions=0.7.1=pypi_0 +vispy=0.6.6=pypi_0 +vowpalwabbit=8.10.2=pypi_0 +w3lib=1.22.0=pypi_0 +wasabi=0.8.2=pypi_0 +watchdog=2.1.3=pypi_0 +wcwidth=0.2.5=pyh9f0ad1d_2 +webencodings=0.5.1=py_1 +websocket-client=0.57.0=py38h578d9bd_4 +websockets=9.1=pypi_0 +werkzeug=2.0.1=pypi_0 +wheel=0.36.2=pyhd3deb0d_0 +widgetsnbextension=3.5.1=pypi_0 +witwidget=1.8.0=pypi_0 +wordcloud=1.8.1=pypi_0 +wrapt=1.12.1=py38h497a2fe_3 +xarray=0.18.2=pypi_0 +xgboost=1.4.2=pypi_0 +xlearn=0.40a1=pypi_0 +xlrd=2.0.1=pypi_0 +xmltodict=0.12.0=pypi_0 +xz=5.2.5=h516909a_1 +yacs=0.1.8=pypi_0 +yagmail=0.14.256=pypi_0 +yaml=0.2.5=h516909a_0 +yapf=0.31.0=pypi_0 +yappi=1.3.2=pypi_0 +yarg=0.1.9=pypi_0 +yarl=1.5.1=py38h1e0a361_0 +yfinance=0.1.59=pypi_0 +you-get=0.4.1527=pypi_0 +zeromq=4.3.4=h9c3ff4c_0 +zict=2.0.0=pypi_0 +zipp=3.5.0=pyhd8ed1ab_0 +zlib=1.2.11=h516909a_1010 +zope-interface=5.4.0=pypi_0 +zstd=1.5.0=ha95c52a_0 + +2022-12-07 at 17:08:32 | ENV | **************************************************************************************************** +2022-12-07 at 17:08:32 | ENV | Collecting package versions of pip environment : /workspace/macs-ai/.venv/bin/pip + +2022-12-07 at 17:08:32 | ENV | aiofiles==22.1.0 +aiohttp-retry==2.8.3 +aiohttp==3.8.3 +aiosignal==1.3.1 +alabaster==0.7.12 +alembic==1.8.1 +amqp==5.1.1 +antlr4-python3-runtime==4.9.3 +anyio==3.6.2 +appdirs==1.4.4 +argon2-cffi-bindings==21.2.0 +argon2-cffi==21.3.0 +astor==0.8.1 +astroid==2.12.12 +asttokens==2.1.0 +async-timeout==4.0.2 +asyncssh==2.12.0 +atpublic==3.1.1 +attrs==22.1.0 +autograd-gamma==0.5.0 +autograd==1.5 +babel==2.11.0 +backcall==0.2.0 +beautifulsoup4==4.11.1 +billiard==3.6.4.0 +black==22.10.0 +bleach==5.0.1 +bokeh==2.4.1 +boto3==1.26.6 +botocore==1.29.6 +cachecontrol==0.12.11 +cachetools==5.2.0 +cachy==0.3.0 +catalogue==2.0.8 +celery==5.2.7 +certifi==2022.9.24 +cffi==1.15.1 +cfgv==3.3.1 +chardet==3.0.4 +charset-normalizer==2.1.1 +classic-algos==1.7.3 +cleo==1.0.0a5 +click-didyoumean==0.3.0 +click-plugins==1.1.1 +click-repl==0.2.0 +click-spinner==0.1.10 +click==7.1.2 +cloudpickle==2.2.0 +colorama==0.4.6 +commonmark==0.9.1 +configobj==5.0.6 +contourpy==1.0.6 +coverage==6.5.0 +crashtest==0.3.1 +cryptography==38.0.3 +cycler==0.11.0 +databricks-cli==0.17.3 +dataset-report==0.2 +debugpy==1.6.3 +decorator==5.1.1 +deepzoom==0.3.0 +defusedxml==0.7.1 +dictdiffer==0.9.0 +dill==0.3.6 +diskcache==5.4.0 +distlib==0.3.6 +distro==1.8.0 +doc8==0.11.2 +docformatter==1.5.0 +docker==6.0.1 +docutils==0.19 +dpath==2.0.6 +dulwich==0.20.50 +dvc-data==0.25.3 +dvc-gs==2.20.0 +dvc-http==2.27.2 +dvc-objects==0.12.2 +dvc-render==0.0.12 +dvc-task==0.1.5 +dvc==2.34.2 +dvclive==1.0.1 +efficientnet-pytorch==0.6.3 +einops==0.3.2 +entrypoints==0.4 +et-xmlfile==1.1.0 +exceptiongroup==1.0.1 +executing==1.2.0 +fastapi==0.64.0 +fastjsonschema==2.16.2 +filelock==3.8.0 +flake8==5.0.4 +flask==2.2.2 +flatten-dict==0.4.2 +flufl.lock==7.1.1 +fonttools==4.38.0 +formulaic==0.5.2 +frozenlist==1.3.3 +fsspec==2022.11.0 +ftfy==6.1.1 +funcy==1.17 +future==0.18.2 +gcsfs==2022.11.0 +gitdb==4.0.9 +gitpython==3.1.29 +google-api-core==2.10.2 +google-auth-oauthlib==0.7.1 +google-auth==2.14.1 +google-cloud-core==2.3.2 +google-cloud-storage==2.6.0 +google-crc32c==1.5.0 +google-resumable-media==2.4.0 +googleapis-common-protos==1.56.4 +gprof2dot==2022.7.29 +grandalf==0.6 +graphlib-backport==1.0.3 +greenlet==2.0.1 +gunicorn==20.1.0 +h11==0.14.0 +html5lib==1.1 +htmlmin==0.1.12 +hydra-core==1.2.0 +identify==2.5.8 +idna==2.8 +imagehash==4.3.1 +imageio==2.22.4 +imagesize==1.4.1 +importlib-metadata==5.0.0 +importlib-resources==5.10.0 +iniconfig==1.1.1 +interface-meta==1.3.0 +ipdb==0.13.9 +ipykernel==6.17.1 +ipython-genutils==0.2.0 +ipython==8.6.0 +ipywidgets==8.0.2 +isort==5.10.1 +iterative-telemetry==0.0.6 +itsdangerous==2.1.2 +jaraco.classes==3.2.3 +jedi==0.18.1 +jeepney==0.8.0 +jinja2==3.0.2 +jmespath==1.0.1 +joblib==1.1.1 +joypy==0.2.6 +jsonpath-ng==1.5.3 +jsonschema==4.17.0 +jupyter-client==7.4.4 +jupyter-core==5.0.0 +jupyter-server==1.23.1 +jupyterlab-pygments==0.2.2 +jupyterlab-widgets==3.0.3 +keyring==23.11.0 +kiwisolver==1.4.4 +kombu==5.2.4 +lazy-object-proxy==1.8.0 +lifelines==0.27.3 +llvmlite==0.39.1 +lockfile==0.12.2 +loguru==0.5.3 +lxml==4.9.1 +m2r==0.2.1 +macs-ai==0.0.0 +mailchecker==5.0.3 +mako==1.2.3 +markupsafe==2.1.1 +matplotlib-inline==0.1.6 +matplotlib==3.5.3 +mccabe==0.7.0 +missingno==0.5.1 +mistune==0.8.4 +mlflow==1.30.0 +more-itertools==9.0.0 +msgpack==1.0.4 +multidict==6.0.2 +multimethod==1.8 +mypy-extensions==0.4.3 +mypy==0.971 +nanotime==0.5.2 +nbclassic==0.4.8 +nbclient==0.7.0 +nbconvert==6.5.4 +nbformat==5.7.0 +nbsphinx==0.6.1 +nest-asyncio==1.5.6 +networkx==2.8.8 +nodeenv==1.7.0 +notebook-shim==0.2.2 +notebook==6.5.2 +numba==0.56.4 +numpy==1.23.4 +nvidia-cublas-cu11==11.10.3.66 +nvidia-cuda-nvrtc-cu11==11.7.99 +nvidia-cuda-runtime-cu11==11.7.99 +nvidia-cudnn-cu11==8.5.0.96 +oauthlib==3.2.2 +omegaconf==2.2.3 +openpyxl==3.0.10 +openslide-python==1.1.2 +overrides==1.9 +owkin-dataset-format==8.5.4 +owkin-galaxy-common==9.2.0 +owkin-params==8.5.4 +owkin-slidelib==9.2.0 +owkin-tilingtoolv2==9.5.0 +packaging==21.3 +pandas-profiling==3.3.0 +pandas-stubs==1.5.1.221024 +pandas==1.4.4 +pandoc==1.1.0 +pandocfilters==1.5.0 +parso==0.8.3 +pathlib2==2.3.7.post1 +pathspec==0.9.0 +patsy==0.5.3 +pbr==5.11.0 +pexpect==4.8.0 +phik==0.12.2 +phonenumbers==8.13.0 +pickleshare==0.7.5 +pillow==8.4.0 +pip==22.3.1 +pkginfo==1.8.3 +pkgutil-resolve-name==1.3.10 +platformdirs==2.5.3 +pluggy==1.0.0 +plumbum==1.8.0 +ply==3.11 +poetry-core==1.3.2 +poetry-plugin-export==1.2.0 +poetry==1.2.2 +pre-commit==2.20.0 +prometheus-client==0.15.0 +prometheus-flask-exporter==0.20.3 +prompt-toolkit==3.0.32 +protobuf==4.21.9 +psutil==5.9.4 +ptyprocess==0.7.0 +pure-eval==0.2.2 +pyasn1-modules==0.2.8 +pyasn1==0.4.8 +pycodestyle==2.9.1 +pycparser==2.21 +pydantic==1.4 +pydata-sphinx-theme==0.10.1 +pydocstyle==6.1.1 +pydot==1.4.2 +pyflakes==2.5.0 +pygit2==1.11.1 +pygments==2.13.0 +pygtrie==2.3.2 +pyjwt==2.6.0 +pylev==1.4.0 +pylint==2.15.5 +pynndescent==0.5.8 +pyparsing==2.4.7 +pyrsistent==0.19.2 +pytest-cov==3.0.0 +pytest-profiling==1.7.0 +pytest-runner==6.0.0 +pytest-sphinx==0.3.1 +pytest==7.2.0 +python-benedict==0.27.0 +python-dateutil==2.8.2 +python-fsutil==0.7.0 +python-pptx==0.6.18 +python-slugify==6.1.2 +pytz==2022.6 +pywavelets==1.4.1 +pyyaml==6.0 +pyzmq==24.0.1 +querystring-parser==1.2.4 +recommonmark==0.7.1 +requests-oauthlib==1.3.1 +requests-toolbelt==0.9.1 +requests==2.28.1 +restructuredtext-lint==1.4.0 +rich==12.6.0 +roc-utils==0.2.2 +rsa==4.9 +ruamel.yaml.clib==0.2.7 +ruamel.yaml==0.17.21 +s3transfer==0.6.0 +scikit-image==0.19.3 +scikit-learn==1.1.3 +scipy==1.9.3 +scmrepo==0.1.3 +seaborn==0.11.2 +secretstorage==3.3.3 +send2trash==1.8.0 +setuptools-scm==7.0.5 +setuptools==65.5.1 +shapely==1.6.4.post2 +shellingham==1.5.0 +shortuuid==1.0.10 +shtab==1.5.7 +six==1.16.0 +smmap==5.0.0 +sniffio==1.3.0 +snowballstemmer==2.2.0 +soupsieve==2.3.2.post1 +sphinx-autodoc-typehints==1.19.5 +sphinx-gallery==0.10.1 +sphinx-paramlinks==0.4.3 +sphinx==5.3.0 +sphinxcontrib-applehelp==1.0.2 +sphinxcontrib-devhelp==1.0.2 +sphinxcontrib-fulltoc==1.2.0 +sphinxcontrib-htmlhelp==2.0.0 +sphinxcontrib-jsmath==1.0.1 +sphinxcontrib-mermaid==0.7.1 +sphinxcontrib-mockautodoc==0.0.1.dev20130518 +sphinxcontrib-qthelp==1.0.3 +sphinxcontrib-serializinghtml==1.1.5 +sqlalchemy==1.4.43 +sqlparse==0.4.3 +stack-data==0.6.0 +starlette==0.13.6 +statsmodels==0.13.5 +stevedore==4.1.1 +tabulate==0.9.0 +tangled-up-in-unicode==0.2.0 +terminado==0.17.0 +text-unidecode==1.3 +threadpoolctl==3.1.0 +tifffile==2022.10.10 +tile-shapley-bschmauch==0.0.1 +tilesprojector==0.1.0 +tinycss2==1.2.1 +toml==0.10.2 +tomli==2.0.1 +tomlkit==0.11.6 +torch==1.11.0 +torchvision==0.12.0 +tornado==6.2 +tqdm==4.64.1 +traitlets==5.5.0 +typeguard==2.4.1 +typer==0.3.2 +types-docutils==0.18.3 +types-jinja2==2.11.9 +types-markupsafe==1.1.10 +types-python-dateutil==2.8.19.3 +types-pytz==2022.6.0.1 +types-pyyaml==6.0.12.2 +types-setuptools==57.4.18 +typing-extensions==4.4.0 +umap-learn==0.5.3 +untokenize==0.1.1 +urllib3==1.25.11 +uvicorn==0.19.0 +vhisto==1.3.1 +vine==5.0.0 +virtualenv==20.16.6 +visions==0.7.5 +voluptuous==0.13.1 +watchdog==2.1.9 +wcwidth==0.2.5 +webencodings==0.5.1 +websocket-client==1.4.2 +werkzeug==2.2.2 +wheel==0.38.4 +widgetsnbextension==4.0.3 +wrapt==1.14.1 +xlrd==2.0.1 +xlsxwriter==3.0.3 +xmltodict==0.13.0 +xyzservices==2022.9.0 +yarl==1.8.1 +zc.lockfile==2.0 +zipp==3.10.0 diff --git a/features/exp_07_12_2022_17:08:24:907.log b/features/exp_07_12_2022_17:08:24:907.log new file mode 100644 index 0000000000000000000000000000000000000000..3223c7ceae1434e36f7371afccdec6f4731b764f --- /dev/null +++ b/features/exp_07_12_2022_17:08:24:907.log @@ -0,0 +1,8 @@ +2022-12-07 at 17:08:24 | DEBUG | logging.py:init_logging:108 | User: root @ host : ws-csaillard-mlhub-erlangen +2022-12-07 at 17:08:32 | INFO | logging.py:init_logging:113 | System and python env info logged to log file .... +2022-12-07 at 17:08:32 | DEBUG | tile.py:main:83 | python tile.py --cohort TCGA_BLCA --matter_detector_name bunet --extractor_name wide_resnet_50_2_coad_moco_v2 --checkpoint checkpoint-85200 --save_dir /opt/storage/preprocessed/Bladder_Project_Erlangen_data_science/features/ +2022-12-07 at 17:08:32 | INFO | tile.py:main:84 | {'cohort': 'TCGA_BLCA', 'matter_detector_name': 'bunet', 'extractor_name': 'wide_resnet_50_2_coad_moco_v2', 'checkpoint': 'checkpoint-85200', 'device': None, 'mpp': 0.5, 'save_dir': PosixPath('/opt/storage/preprocessed/Bladder_Project_Erlangen_data_science/features'), 'path_coords': None} +2022-12-07 at 17:08:32 | INFO | tile.py:main:85 | path slides : /opt/storage/preprocessed/Bladder_Project_Erlangen_data_science/slides/TCGA_BLCA +2022-12-07 at 17:08:32 | INFO | tile.py:main:86 | path save : /opt/storage/preprocessed/Bladder_Project_Erlangen_data_science/features/features_TCGA_BLCA_wide_resnet_50_2_coad_moco_v2/checkpoint-85200/mpp_0.5 +2022-12-07 at 17:08:32 | INFO | tile.py:main:90 | Found 460 slides left to tile +2022-12-07 at 17:08:32 | INFO | bunet.py:__init__:60 | Loading BUNet from classic-algo's hub. diff --git a/features/exp_08_12_2022_10:02:32:778.env b/features/exp_08_12_2022_10:02:32:778.env new file mode 100644 index 0000000000000000000000000000000000000000..f4f10620e1fb65c048017bd39669bd544b003451 --- /dev/null +++ b/features/exp_08_12_2022_10:02:32:778.env @@ -0,0 +1,1470 @@ +2022-12-08 at 10:02:32 | ENV | **************************************************************************************************** +2022-12-08 at 10:02:32 | ENV | Logging system environment info ... +2022-12-08 at 10:02:32 | ENV | +AUTHENTICATE_VIA_JUPYTER:true +AUTOJUMP_ERROR_PATH:/root/.local/share/autojump/errors.log +AUTOJUMP_SOURCED:1 +BLIS_NUM_THREADS:32 +COLUMNS:123 +CONDA_DEFAULT_ENV:base +CONDA_DIR:/opt/conda +CONDA_EXE:/opt/conda/bin/conda +CONDA_MKL_INTERFACE_LAYER_BACKUP: +CONDA_PREFIX:/opt/conda +CONDA_PROMPT_MODIFIER:(base) +CONDA_PYTHON_DIR:/opt/conda/lib/python3.8 +CONDA_PYTHON_EXE:/opt/conda/bin/python +CONDA_ROOT:/opt/conda +CONDA_SHLVL:1 +CONDA_VERSION:4.9.2 +CONFIG_BACKUP_ENABLED:true +CUDA_VERSION:11.2.2 +CUDNN_VERSION:8.1.1.33 +DATA_ENVIRONMENT:/workspace/environment +DEBIAN_FRONTEND:noninteractive +DISPLAY::1 +ENABLE_IPC:1 +GIT_PYTHON_REFRESH:quiet +GREP_COLOR:1;33 +HDF5_USE_FILE_LOCKING:False +HOME:/root +HOSTNAME:ws-csaillard-mlhub-erlangen +HUB_PORT:tcp://10.97.52.57:8081 +HUB_PORT_22_TCP:tcp://10.97.52.57:22 +HUB_PORT_22_TCP_ADDR:10.97.52.57 +HUB_PORT_22_TCP_PORT:22 +HUB_PORT_22_TCP_PROTO:tcp +HUB_PORT_8081_TCP:tcp://10.97.52.57:8081 +HUB_PORT_8081_TCP_ADDR:10.97.52.57 +HUB_PORT_8081_TCP_PORT:8081 +HUB_PORT_8081_TCP_PROTO:tcp +HUB_SERVICE_HOST:10.97.52.57 +HUB_SERVICE_PORT:8081 +HUB_SERVICE_PORT_HUB:8081 +HUB_SERVICE_PORT_SSH:22 +INCLUDE_TUTORIALS:true +JPY_API_TOKEN:326740463d994644ae8dac0716c88807 +JUPYTERHUB_ACTIVITY_URL:http://10.97.52.57:8081/hub/api/users/csaillard/activity +JUPYTERHUB_ADMIN_ACCESS:1 +JUPYTERHUB_API_TOKEN:326740463d994644ae8dac0716c88807 +JUPYTERHUB_API_URL:http://10.97.52.57:8081/hub/api +JUPYTERHUB_BASE_URL:/ +JUPYTERHUB_CLIENT_ID:jupyterhub-user-csaillard-erlangen +JUPYTERHUB_HOST: +JUPYTERHUB_OAUTH_CALLBACK_URL:/user/csaillard/erlangen/oauth_callback +JUPYTERHUB_SERVER_NAME:erlangen +JUPYTERHUB_SERVICE_PREFIX:/user/csaillard/erlangen/ +JUPYTERHUB_USER:csaillard +JUPYTER_IMAGE:mltooling/ml-workspace-gpu +JUPYTER_IMAGE_SPEC:mltooling/ml-workspace-gpu +JUPYTER_SERVER_ROOT:/workspace +JUPYTER_SERVER_URL:http://0.0.0.0:8090/user/csaillard/erlangen/ +KMP_AFFINITY:granularity=fine,compact,1,0 +KMP_BLOCKTIME:0 +KMP_DUPLICATE_LIB_OK:True +KUBERNETES_PORT:tcp://10.96.0.1:443 +KUBERNETES_PORT_443_TCP:tcp://10.96.0.1:443 +KUBERNETES_PORT_443_TCP_ADDR:10.96.0.1 +KUBERNETES_PORT_443_TCP_PORT:443 +KUBERNETES_PORT_443_TCP_PROTO:tcp +KUBERNETES_SERVICE_HOST:10.96.0.1 +KUBERNETES_SERVICE_PORT:443 +KUBERNETES_SERVICE_PORT_HTTPS:443 +LANG:en_US.UTF-8 +LANGUAGE:en_US:en +LC_ALL:en_US.UTF-8 +LD_LIBRARY_PATH:/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/cuda/extras/CUPTI/lib64 +LESS:-R +LIBRARY_PATH:/usr/local/cuda/lib64/stubs +LINES:25 +LOGNAME:root +LSCOLORS:exfxcxdxbxegedabagacad +LS_COLORS: +MAX_NUM_THREADS:auto +MINICONDA_MD5:122c8c9beb51e124ab32a0fa6426c656 +MINICONDA_VERSION:4.9.2 +MKL_INTERFACE_LAYER:LP64,GNU +MKL_NUM_THREADS:32 +MKL_THREADING_LAYER:GNU +NB_USER:root +NCCL_VERSION:2.8.4 +NUMBA_NUM_THREADS:32 +NUMEXPR_MAX_THREADS:32 +NUMEXPR_NUM_THREADS:32 +NVIDIA_DRIVER_CAPABILITIES:compute,utility +NVIDIA_REQUIRE_CUDA:cuda>=11.2 brand=tesla,driver>=418,driver<419 brand=tesla,driver>=440,driver<441 driver>=450 +NVIDIA_VISIBLE_DEVICES:all +OLDPWD:/workspace/macs-ai +OMP_NUM_THREADS:32 +OPENBLAS_NUM_THREADS:32 +PAGER:less +PATH:/workspace/macs-ai/.venv/bin:/resources/.pyenv/plugins/pyenv-virtualenv/shims:/resources/.pyenv/plugins/pyenv-virtualenv/shims:/opt/conda/bin:/opt/conda/condabin:/resources/.pyenv/plugins/pyenv-virtualenv/shims:/usr/local/nvidia/bin:/usr/local/cuda/bin:/opt/node/bin:/root/.local/bin:/resources/.pyenv/shims:/resources/.pyenv/bin:/opt/conda/bin:/usr/local/openresty/nginx/sbin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/resources/.fzf/bin:/root/.fzf/bin +PROXY_API_PORT:tcp://10.99.174.61:8001 +PROXY_API_PORT_8001_TCP:tcp://10.99.174.61:8001 +PROXY_API_PORT_8001_TCP_ADDR:10.99.174.61 +PROXY_API_PORT_8001_TCP_PORT:8001 +PROXY_API_PORT_8001_TCP_PROTO:tcp +PROXY_API_SERVICE_HOST:10.99.174.61 +PROXY_API_SERVICE_PORT:8001 +PROXY_PUBLIC_PORT:tcp://10.101.179.86:80 +PROXY_PUBLIC_PORT_443_TCP:tcp://10.101.179.86:443 +PROXY_PUBLIC_PORT_443_TCP_ADDR:10.101.179.86 +PROXY_PUBLIC_PORT_443_TCP_PORT:443 +PROXY_PUBLIC_PORT_443_TCP_PROTO:tcp +PROXY_PUBLIC_PORT_80_TCP:tcp://10.101.179.86:80 +PROXY_PUBLIC_PORT_80_TCP_ADDR:10.101.179.86 +PROXY_PUBLIC_PORT_80_TCP_PORT:80 +PROXY_PUBLIC_PORT_80_TCP_PROTO:tcp +PROXY_PUBLIC_SERVICE_HOST:10.101.179.86 +PROXY_PUBLIC_SERVICE_PORT:80 +PROXY_PUBLIC_SERVICE_PORT_HTTP:80 +PROXY_PUBLIC_SERVICE_PORT_HTTPS:443 +PS1:(macs-ai-py3.8) +$(_user_host)${_current_dir} $(git_prompt_info) $(ruby_prompt_info) +%{%(!.${fg[white]}.${fg[white]})%}▶%{$reset_color%} +PWD:/workspace/macs-ai/macs_ai/engine/tiling +PYENV_ROOT:/resources/.pyenv +PYENV_SHELL:zsh +PYENV_VIRTUALENV_INIT:1 +PYTHON_PRETTY_ERRORS_ISATTY_ONLY:1 +PYTHON_VERSION:3.8.10 +PYXTERM_DIMENSIONS:80x25 +RESOURCES_PATH:/resources +SDKMAN_CANDIDATES_API:https://api.sdkman.io/2 +SDKMAN_CANDIDATES_DIR:/root/.sdkman/candidates +SDKMAN_DIR:/root/.sdkman +SDKMAN_PLATFORM:linuxx64 +SDKMAN_VERSION:5.11.7 +SHARED_LINKS_ENABLED:true +SHELL:/usr/bin/zsh +SHLVL:2 +SHUTDOWN_INACTIVE_KERNELS:true +SPARK_WORKER_CORES:32 +SSH_JUMPHOST_TARGET:ws-csaillard-mlhub-erlangen +SSL_RESOURCES_PATH:/resources/ssl +SUPERVISOR_ENABLED:1 +SUPERVISOR_GROUP_NAME:jupyter +SUPERVISOR_PROCESS_NAME:jupyter +SUPERVISOR_SERVER_URL:unix:///var/run/supervisor.sock +TBB_NUM_THREADS:32 +TERM:tmux-256color +TF_FORCE_GPU_ALLOW_GROWTH:true +TMUX:/tmp//tmux-0/default,4768,0 +TMUX_PANE:%0 +USER_GID:0 +VECLIB_MAXIMUM_THREADS:32 +VIRTUAL_ENV:/workspace/macs-ai/.venv +VNC_COL_DEPTH:24 +VNC_PW:vncpassword +VNC_RESOLUTION:1600x900 +WORKSPACE_BASE_URL:/user/csaillard/erlangen +WORKSPACE_FLAVOR:gpu +WORKSPACE_HOME:/workspace +WORKSPACE_PORT:8080 +WORKSPACE_VERSION:0.13.2 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT:tcp://10.98.81.8:8080 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT_8080_TCP:tcp://10.98.81.8:8080 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT_8080_TCP_ADDR:10.98.81.8 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT_8080_TCP_PORT:8080 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_SERVICE_HOST:10.98.81.8 +WS_5C8AE82401A26_2D11ED_2D895A_2DAED44DC1C999_MLHUB_SERVICE_PORT:8080 +WS_ADUPLAIX_MLHUB_PORT:tcp://10.103.37.32:8080 +WS_ADUPLAIX_MLHUB_PORT_8080_TCP:tcp://10.103.37.32:8080 +WS_ADUPLAIX_MLHUB_PORT_8080_TCP_ADDR:10.103.37.32 +WS_ADUPLAIX_MLHUB_PORT_8080_TCP_PORT:8080 +WS_ADUPLAIX_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_ADUPLAIX_MLHUB_SERVICE_HOST:10.103.37.32 +WS_ADUPLAIX_MLHUB_SERVICE_PORT:8080 +WS_AGRIMALDI_MLHUB_PORT:tcp://10.97.18.156:8080 +WS_AGRIMALDI_MLHUB_PORT_8080_TCP:tcp://10.97.18.156:8080 +WS_AGRIMALDI_MLHUB_PORT_8080_TCP_ADDR:10.97.18.156 +WS_AGRIMALDI_MLHUB_PORT_8080_TCP_PORT:8080 +WS_AGRIMALDI_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_AGRIMALDI_MLHUB_SERVICE_HOST:10.97.18.156 +WS_AGRIMALDI_MLHUB_SERVICE_PORT:8080 +WS_BGROSS_MLHUB_PORT:tcp://10.108.87.152:8080 +WS_BGROSS_MLHUB_PORT_8080_TCP:tcp://10.108.87.152:8080 +WS_BGROSS_MLHUB_PORT_8080_TCP_ADDR:10.108.87.152 +WS_BGROSS_MLHUB_PORT_8080_TCP_PORT:8080 +WS_BGROSS_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_BGROSS_MLHUB_SERVICE_HOST:10.108.87.152 +WS_BGROSS_MLHUB_SERVICE_PORT:8080 +WS_BSCHMAUCH_MLHUB_GPU_2DSERVER_PORT:tcp://10.100.155.45:8080 +WS_BSCHMAUCH_MLHUB_GPU_2DSERVER_PORT_8080_TCP:tcp://10.100.155.45:8080 +WS_BSCHMAUCH_MLHUB_GPU_2DSERVER_PORT_8080_TCP_ADDR:10.100.155.45 +WS_BSCHMAUCH_MLHUB_GPU_2DSERVER_PORT_8080_TCP_PORT:8080 +WS_BSCHMAUCH_MLHUB_GPU_2DSERVER_PORT_8080_TCP_PROTO:tcp +WS_BSCHMAUCH_MLHUB_GPU_2DSERVER_SERVICE_HOST:10.100.155.45 +WS_BSCHMAUCH_MLHUB_GPU_2DSERVER_SERVICE_PORT:8080 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT:tcp://10.107.155.225:8080 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT_8080_TCP:tcp://10.107.155.225:8080 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT_8080_TCP_ADDR:10.107.155.225 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT_8080_TCP_PORT:8080 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_SERVICE_HOST:10.107.155.225 +WS_E216B37E01A26_2D11ED_2DAF39_2DAED44DC1C999_MLHUB_SERVICE_PORT:8080 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT:tcp://10.109.107.166:8080 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT_8080_TCP:tcp://10.109.107.166:8080 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT_8080_TCP_ADDR:10.109.107.166 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT_8080_TCP_PORT:8080 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_SERVICE_HOST:10.109.107.166 +WS_E5831170013CC_2D11ED_2D8CA7_2DAED44DC1C998_MLHUB_SERVICE_PORT:8080 +WS_KSCHUTTE_MLHUB_GPU_PORT:tcp://10.105.54.95:8080 +WS_KSCHUTTE_MLHUB_GPU_PORT_8080_TCP:tcp://10.105.54.95:8080 +WS_KSCHUTTE_MLHUB_GPU_PORT_8080_TCP_ADDR:10.105.54.95 +WS_KSCHUTTE_MLHUB_GPU_PORT_8080_TCP_PORT:8080 +WS_KSCHUTTE_MLHUB_GPU_PORT_8080_TCP_PROTO:tcp +WS_KSCHUTTE_MLHUB_GPU_SERVICE_HOST:10.105.54.95 +WS_KSCHUTTE_MLHUB_GPU_SERVICE_PORT:8080 +WS_MHE_MLHUB_PORT:tcp://10.98.216.54:8080 +WS_MHE_MLHUB_PORT_8080_TCP:tcp://10.98.216.54:8080 +WS_MHE_MLHUB_PORT_8080_TCP_ADDR:10.98.216.54 +WS_MHE_MLHUB_PORT_8080_TCP_PORT:8080 +WS_MHE_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_MHE_MLHUB_SERVICE_HOST:10.98.216.54 +WS_MHE_MLHUB_SERVICE_PORT:8080 +WS_PBANNIER_MLHUB_ERLANGEN_PORT:tcp://10.103.199.22:8080 +WS_PBANNIER_MLHUB_ERLANGEN_PORT_8080_TCP:tcp://10.103.199.22:8080 +WS_PBANNIER_MLHUB_ERLANGEN_PORT_8080_TCP_ADDR:10.103.199.22 +WS_PBANNIER_MLHUB_ERLANGEN_PORT_8080_TCP_PORT:8080 +WS_PBANNIER_MLHUB_ERLANGEN_PORT_8080_TCP_PROTO:tcp +WS_PBANNIER_MLHUB_ERLANGEN_SERVICE_HOST:10.103.199.22 +WS_PBANNIER_MLHUB_ERLANGEN_SERVICE_PORT:8080 +WS_VCABELI_MLHUB_PORT:tcp://10.102.158.199:8080 +WS_VCABELI_MLHUB_PORT_8080_TCP:tcp://10.102.158.199:8080 +WS_VCABELI_MLHUB_PORT_8080_TCP_ADDR:10.102.158.199 +WS_VCABELI_MLHUB_PORT_8080_TCP_PORT:8080 +WS_VCABELI_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_VCABELI_MLHUB_SERVICE_HOST:10.102.158.199 +WS_VCABELI_MLHUB_SERVICE_PORT:8080 +WS_YFU_MLHUB_PORT:tcp://10.102.150.67:8080 +WS_YFU_MLHUB_PORT_8080_TCP:tcp://10.102.150.67:8080 +WS_YFU_MLHUB_PORT_8080_TCP_ADDR:10.102.150.67 +WS_YFU_MLHUB_PORT_8080_TCP_PORT:8080 +WS_YFU_MLHUB_PORT_8080_TCP_PROTO:tcp +WS_YFU_MLHUB_SERVICE_HOST:10.102.150.67 +WS_YFU_MLHUB_SERVICE_PORT:8080 +XDG_CACHE_HOME:/root/.cache/ +XDG_RUNTIME_DIR:/tmp +ZSH:/root/.oh-my-zsh +_:/workspace/macs-ai/.venv/bin/python +_CE_CONDA: +_CE_M: +source: +2022-12-08 at 10:02:32 | ENV | **************************************************************************************************** +2022-12-08 at 10:02:32 | ENV | Collecting package versions of conda environment : /opt/conda/bin/conda + +2022-12-08 at 10:02:40 | ENV | # This file may be used to create an environment using: +# $ conda create --name --file +# platform: linux-64 +_libgcc_mutex=0.1=conda_forge +_openmp_mutex=4.5=1_llvm +absl-py=0.13.0=pypi_0 +addict=2.4.0=pypi_0 +agate=1.6.2=pypi_0 +agate-dbf=0.2.2=pypi_0 +agate-excel=0.2.3=pypi_0 +agate-sql=0.5.6=pypi_0 +aiohttp=3.7.4.post0=pypi_0 +albumentations=1.0.0=pypi_0 +alembic=1.4.1=pypi_0 +altair=4.1.0=pypi_0 +amply=0.1.4=py_0 +amqp=5.0.6=pypi_0 +aniso8601=7.0.0=pypi_0 +annoy=1.17.0=pypi_0 +ansiwrap=0.8.4=pypi_0 +antlr4-python3-runtime=4.8=pypi_0 +anyio=3.2.1=py38h578d9bd_0 +appdirs=1.4.4=pyh9f0ad1d_0 +apscheduler=3.6.3=pypi_0 +argcomplete=1.12.3=pypi_0 +argon2-cffi=20.1.0=py38h497a2fe_2 +arrow=1.1.1=pypi_0 +asgiref=3.4.1=pypi_0 +astor=0.8.1=pypi_0 +astroid=2.5.6=pypi_0 +astunparse=1.6.3=pypi_0 +async-generator=1.10=pypi_0 +async-timeout=3.0.1=pypi_0 +attrs=21.2.0=pyhd8ed1ab_0 +audioread=2.1.9=pypi_0 +augmentor=0.2.8=pypi_0 +autocfg=0.0.8=pypi_0 +autocommand=2.2.1=pypi_0 +autograd=1.3=pypi_0 +autograd-gamma=0.5.0=pypi_0 +autokeras=1.0.15=pypi_0 +automat=20.2.0=pypi_0 +autopep8=1.5.7=pypi_0 +babel=2.9.1=pyh44b312d_0 +backcall=0.2.0=pyh9f0ad1d_0 +backports=1.0=py_2 +backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0 +banal=1.0.6=pypi_0 +bandit=1.7.0=pypi_0 +base58=2.1.0=pypi_0 +bayesian-optimization=1.2.0=pypi_0 +bcrypt=3.2.0=pypi_0 +beautifulsoup4=4.9.3=pyhb0f4dca_0 +better-exceptions=0.3.3=pypi_0 +billiard=3.6.4.0=pypi_0 +black=21.6b0=pypi_0 +blas=2.109=mkl +blas-devel=3.9.0=9_mkl +blaze=0.10.1=pypi_0 +bleach=3.3.0=pyh44b312d_0 +blessings=1.7=pypi_0 +blinker=1.4=pypi_0 +blis=0.7.4=pypi_0 +bokeh=2.3.3=pypi_0 +boltons=21.0.0=pypi_0 +boost=1.76.0=py38hfc89cab_0 +boost-cpp=1.76.0=h312852a_1 +boto3=1.17.101=pypi_0 +botocore=1.20.110=pypi_0 +bottle=0.12.19=pypi_0 +bottleneck=1.3.2=pypi_0 +bpytop=1.0.67=pypi_0 +bqplot=0.12.29=pypi_0 +branca=0.4.2=pypi_0 +brotlipy=0.7.0=py38h497a2fe_1001 +bs4=0.0.1=pypi_0 +bzip2=1.0.8=h7f98852_4 +c-ares=1.17.1=h7f98852_1 +ca-certificates=2022.12.7=ha878542_0 +cachecontrol=0.12.6=pypi_0 +cachetools=4.2.2=pypi_0 +cachy=0.3.0=pypi_0 +cassandra-driver=3.25.0=pypi_0 +catalogue=2.0.4=pypi_0 +category-encoders=2.2.2=pypi_0 +celery=5.1.1=pypi_0 +cerberus=1.3.4=pypi_0 +certifi=2022.12.7=pyhd8ed1ab_0 +certipy=0.1.3=pypi_0 +cffi=1.14.5=pypi_0 +chainer=7.8.0=pypi_0 +chardet=4.0.0=py38h578d9bd_1 +cleo=0.8.1=pypi_0 +click=7.1.2=pypi_0 +click-didyoumean=0.0.3=pypi_0 +click-plugins=1.1.1=pypi_0 +click-repl=0.2.0=pypi_0 +click-spinner=0.1.10=pypi_0 +cliff=3.8.0=pypi_0 +clikit=0.6.2=pypi_0 +cloudant=2.14.0=pypi_0 +cloudpickle=1.6.0=pypi_0 +cma=3.1.0=pypi_0 +cmaes=0.8.2=pypi_0 +cmake=3.20.4=pypi_0 +cmd2=2.1.2=pypi_0 +coincbc=2.10.5=hcee13e7_1 +colorama=0.4.4=pypi_0 +colorcet=2.0.6=pypi_0 +colorlog=5.0.1=pypi_0 +commonmark=0.9.1=pypi_0 +conda=4.10.3=py38h578d9bd_0 +conda-build=3.21.4=py38h578d9bd_0 +conda-package-handling=1.7.3=py38h497a2fe_0 +configargparse=1.5.1=pyhd8ed1ab_0 +configobj=5.0.6=pypi_0 +confuse=1.5.0=pypi_0 +connection_pool=0.0.3=pyhd3deb0d_0 +constantly=15.1.0=pypi_0 +coverage=5.5=pypi_0 +crashtest=0.3.1=pypi_0 +crc32c=2.2.post0=pypi_0 +cryptography=3.4.7=py38ha5dfef3_0 +cssselect=1.1.0=pypi_0 +cssutils=2.3.0=pypi_0 +csvkit=1.0.5=pypi_0 +cudatoolkit=11.2.72=h2bc3f7f_0 +cupy-cuda112=9.2.0=pypi_0 +cx-oracle=8.2.1=pypi_0 +cycler=0.10.0=pypi_0 +cymem=2.0.5=pypi_0 +cysignals=1.10.3=pypi_0 +cython=0.29.23=pypi_0 +cytoolz=0.11.0=pypi_0 +dask=2021.6.2=pypi_0 +dask-glm=0.2.0=pypi_0 +dask-ml=1.9.0=pypi_0 +databricks-cli=0.14.3=pypi_0 +dataclasses=0.6=pypi_0 +dataset=1.5.0=pypi_0 +datashape=0.5.2=pypi_0 +datasketch=1.5.3=pypi_0 +datrie=0.8.2=py38h497a2fe_2 +dbfread=2.0.7=pypi_0 +deap=1.3.1=pypi_0 +debugpy=1.3.0=py38h709712a_0 +decorator=4.4.2=pypi_0 +defusedxml=0.7.1=pyhd8ed1ab_0 +deprecated=1.2.12=pypi_0 +deprecation=2.1.0=pypi_0 +dgl=0.6.1=pypi_0 +diamond=4.0.515=pypi_0 +dill=0.3.4=pypi_0 +distlib=0.3.2=pypi_0 +distributed=2021.6.2=pypi_0 +dm-sonnet=2.0.0=pypi_0 +dm-tree=0.1.6=pypi_0 +docker=5.0.0=pypi_0 +docopt=0.6.2=pypi_0 +docutils=0.17.1=py38h578d9bd_0 +dparse=0.5.1=pypi_0 +eagerpy=0.29.0=pypi_0 +edward=1.3.5=pypi_0 +einops=0.3.0=pypi_0 +elasticsearch=7.13.2=pypi_0 +elasticsearch-dsl=7.3.0=pypi_0 +eli5=0.11.0=pypi_0 +empyrical=0.5.5=pypi_0 +en-core-web-sm=3.0.0=pypi_0 +entrypoints=0.3=pyhd8ed1ab_1003 +et-xmlfile=1.1.0=pypi_0 +fabric=2.6.0=pypi_0 +facets-overview=1.0.0=pypi_0 +fairseq=0.10.2=pypi_0 +faiss=1.7.0=py38h9ff9125_8_cpu +faiss-cpu=1.7.0=h718b53a_8 +fake-useragent=0.1.11=pypi_0 +faker=8.8.2=pypi_0 +fastai=2.4=pypi_0 +fastapi=0.65.2=pypi_0 +fastcore=1.3.20=pypi_0 +fastprogress=1.0.0=pypi_0 +fastrlock=0.6=pypi_0 +fasttext=0.9.2=pypi_0 +featuretools=0.25.0=pypi_0 +filelock=3.0.12=pyh9f0ad1d_0 +fire=0.4.0=pypi_0 +flake8=3.9.2=pypi_0 +flashtext=2.7=pypi_0 +flask=2.0.1=pypi_0 +flask-cors=3.0.10=pypi_0 +flatbuffers=1.12=pypi_0 +folium=0.12.1=pypi_0 +foolbox=3.3.1=pypi_0 +formulaic=0.2.4=pypi_0 +freetype-py=2.2.0=pypi_0 +fs=2.4.13=pypi_0 +fsspec=2021.7.0=pypi_0 +ftfy=6.0.3=pypi_0 +future=0.18.2=pypi_0 +fuzzywuzzy=0.18.0=pypi_0 +gast=0.4.0=pypi_0 +gensim=4.0.1=pypi_0 +geocoder=1.38.1=pypi_0 +geographiclib=1.52=pypi_0 +geojson=2.5.0=pypi_0 +geomet=0.2.1.post1=pypi_0 +geoplotlib=0.3.2=pypi_0 +geopy=2.1.0=pypi_0 +gin-config=0.4.0=pypi_0 +gitdb=4.0.7=pyhd3eb1b0_0 +gitpython=3.1.18=pyhd8ed1ab_0 +glances=3.1.7=pypi_0 +glob2=0.7=py_0 +gluoncv=0.10.3=pypi_0 +gluonnlp=0.10.0=pypi_0 +google-api-core=1.31.0=pypi_0 +google-api-python-client=2.13.0=pypi_0 +google-auth=1.32.1=pypi_0 +google-auth-httplib2=0.1.0=pypi_0 +google-auth-oauthlib=0.4.4=pypi_0 +google-cloud-core=1.7.1=pypi_0 +google-cloud-storage=1.39.0=pypi_0 +google-crc32c=1.1.2=pypi_0 +google-images-download=2.8.0=pypi_0 +google-pasta=0.2.0=pypi_0 +google-resumable-media=1.3.1=pypi_0 +googleapis-common-protos=1.53.0=pypi_0 +googledrivedownloader=0.4=pypi_0 +gpflow=2.2.1=pypi_0 +gpustat=0.6.0=pypi_0 +gputil=1.4.0=pypi_0 +gpytorch=1.5.0=pypi_0 +graphene=2.1.8=pypi_0 +graphql-core=2.3.2=pypi_0 +graphql-relay=2.0.1=pypi_0 +greenlet=1.1.0=pypi_0 +grip=4.5.2=pypi_0 +grpcio=1.34.1=pypi_0 +gunicorn=20.1.0=pypi_0 +gym=0.18.3=pypi_0 +h11=0.12.0=pypi_0 +h2=3.2.0=pypi_0 +h5py=3.1.0=pypi_0 +heapdict=1.0.1=pypi_0 +holoviews=1.14.4=pypi_0 +hpack=3.0.0=pypi_0 +html5lib=1.1=pypi_0 +htmlmin=0.1.12=pypi_0 +httpie=2.4.0=pypi_0 +httplib2=0.19.1=pypi_0 +huggingface-hub=0.0.12=pypi_0 +hydra-core=1.1.0=pypi_0 +hyperframe=5.2.0=pypi_0 +hyperlink=21.0.0=pypi_0 +hyperopt=0.2.5=pypi_0 +icu=68.1=h58526e2_0 +idna=2.10=pyh9f0ad1d_0 +imagehash=4.2.0=pypi_0 +imageio=2.9.0=pypi_0 +imbalanced-learn=0.8.0=pypi_0 +imgaug=0.4.0=pypi_0 +importlib-metadata=4.6.1=py38h578d9bd_0 +importlib-resources=5.2.0=pypi_0 +imutils=0.5.4=pypi_0 +incremental=21.3.0=pypi_0 +inflect=5.3.0=pypi_0 +influxdb=5.3.1=pypi_0 +iniconfig=1.1.1=pypi_0 +interface-meta=1.2.3=pypi_0 +invoke=1.6.0=pypi_0 +ipydatawidgets=4.2.0=pypi_0 +ipyexperiments=0.1.26=pypi_0 +ipykernel=5.5.5=pypi_0 +ipympl=0.7.0=pypi_0 +ipyparallel=6.3.0=pypi_0 +ipython=7.24.1=py38hd0cf306_0 +ipython_genutils=0.2.0=py_1 +ipywidgets=7.6.3=pypi_0 +isodate=0.6.0=pypi_0 +isort=5.9.1=pypi_0 +itemadapter=0.2.0=pypi_0 +itemloaders=1.0.4=pypi_0 +itsdangerous=2.0.1=pypi_0 +jax=0.2.16=pypi_0 +jaxlib=0.1.68+cuda111=pypi_0 +jedi=0.17.2=pypi_0 +jeepney=0.7.0=pypi_0 +jellyfish=0.8.2=pypi_0 +jinja2=2.11.3=pyhd8ed1ab_2 +jmespath=0.10.0=pypi_0 +joblib=1.0.1=pyhd8ed1ab_0 +json5=0.9.5=pyh9f0ad1d_0 +jsonpickle=2.0.0=pypi_0 +jsonschema=3.2.0=pyhd8ed1ab_3 +jupyter=1.0.0=pypi_0 +jupyter-client=6.2.0=pypi_0 +jupyter-console=6.4.0=pypi_0 +jupyter-contrib-core=0.3.3=pypi_0 +jupyter-contrib-nbextensions=0.5.1=pypi_0 +jupyter-highlight-selected-word=0.2.0=pypi_0 +jupyter-kernel-gateway=2.5.0=pypi_0 +jupyter-latex-envs=1.4.6=pypi_0 +jupyter-lsp=1.3.0=pypi_0 +jupyter-nbextensions-configurator=0.4.1=pypi_0 +jupyter-packaging=0.10.3=pypi_0 +jupyter-resource-usage=0.6.0=pypi_0 +jupyter-server-mathjax=0.2.3=pypi_0 +jupyter-server-proxy=3.0.2=pypi_0 +jupyter-telemetry=0.1.0=pypi_0 +jupyter-tensorboard=0.2.1=pypi_0 +jupyter-tooling-extension=0.1=pypi_0 +jupyter_core=4.7.1=py38h578d9bd_0 +jupyter_server=1.9.0=pyhd8ed1ab_0 +jupyterhub=1.4.1=pypi_0 +jupyterlab=3.0.16=pyhd8ed1ab_0 +jupyterlab-code-formatter=1.4.10=pypi_0 +jupyterlab-git=0.30.1=pypi_0 +jupyterlab-lsp=3.7.0=pypi_0 +jupyterlab-tensorboard=0.2.1=pypi_0 +jupyterlab-widgets=1.0.0=pypi_0 +jupyterlab_server=2.6.1=pyhd8ed1ab_0 +jupytext=1.11.3=pypi_0 +kafka-python=2.0.2=pypi_0 +kaggle=1.5.12=pypi_0 +keract=4.5.0=pypi_0 +keras=2.4.3=pypi_0 +keras-applications=1.0.8=pypi_0 +keras-nightly=2.5.0.dev2021032900=pypi_0 +keras-preprocessing=1.1.2=pypi_0 +keras-rl=0.4.2=pypi_0 +keras-tuner=1.0.3=pypi_0 +keras-vis=0.4.1=pypi_0 +keyring=21.8.0=pypi_0 +kiwisolver=1.3.1=pypi_0 +kmodes=0.11.0=pypi_0 +knockknock=0.1.8.1=pypi_0 +kombu=5.1.0=pypi_0 +krb5=1.19.1=hcc1bbae_0 +kt-legacy=1.0.3=pypi_0 +langid=1.1.6=pypi_0 +lazy-object-proxy=1.6.0=pypi_0 +lazycluster=0.2.4=pypi_0 +lckr-jupyterlab-variableinspector=3.0.9=pypi_0 +ld_impl_linux-64=2.36.1=hea4e1c9_1 +leather=0.3.3=pypi_0 +libarchive=3.5.1=hccf745f_2 +libblas=3.9.0=9_mkl +libcblas=3.9.0=9_mkl +libcurl=7.77.0=h2574ce0_0 +libedit=3.1.20210216=h27cfd23_1 +libev=4.33=h516909a_1 +libfaiss=1.7.0=hb573701_8_cpu +libfaiss-avx2=1.7.0=h1234567_8_cpu +libffi=3.3=h58526e2_2 +libgcc-ng=9.3.0=h2828fa1_19 +libgfortran-ng=9.3.0=hff62375_19 +libgfortran5=9.3.0=hff62375_19 +libgpuarray=0.7.6=h7f98852_1003 +libiconv=1.16=h516909a_0 +libjpeg-turbo=2.1.0=h7f98852_0 +liblapack=3.9.0=9_mkl +liblapacke=3.9.0=9_mkl +liblief=0.11.5=h9c3ff4c_0 +libnghttp2=1.43.0=h812cca2_0 +libopenblas=0.3.15=pthreads_h8fe5266_1 +librosa=0.8.1=pypi_0 +libsodium=1.0.18=h36c2ea0_1 +libsolv=0.7.19=h780b84a_5 +libssh2=1.9.0=ha56f1ee_6 +libstdcxx-ng=9.3.0=h6de172a_19 +libuv=1.40.0=h7b6447c_0 +libxml2=2.9.12=h72842e0_0 +lifelines=0.26.0=pypi_0 +lightfm=1.16=pypi_0 +lightgbm=3.2.1=pypi_0 +lime=0.2.0.1=pypi_0 +line-profiler=3.3.0=pypi_0 +llvm-openmp=11.1.0=h4bd325d_1 +llvmlite=0.36.0=pypi_0 +lmdb=1.2.1=pypi_0 +lml=0.1.0=pypi_0 +locket=0.2.1=pypi_0 +lockfile=0.12.2=pypi_0 +loguru=0.5.3=pypi_0 +luigi=3.0.3=pypi_0 +lxml=4.6.3=pypi_0 +lz4-c=1.9.3=h9c3ff4c_0 +lzo=2.10=h516909a_1000 +mako=1.1.4=pyh44b312d_0 +mamba=0.15.0=py38h2aa5da1_0 +markdown=3.3.4=pypi_0 +markdown-it-py=1.1.0=pypi_0 +markupsafe=2.0.1=py38h497a2fe_0 +marshmallow=3.12.1=pypi_0 +matplotlib=3.4.2=pypi_0 +matplotlib-inline=0.1.2=pyhd8ed1ab_2 +matrix-client=0.3.2=pypi_0 +mccabe=0.6.1=pypi_0 +mdit-py-plugins=0.2.8=pypi_0 +mechanicalsoup=1.1.0=pypi_0 +memory-profiler=0.58.0=pypi_0 +mesh-tensorflow=0.1.19=pypi_0 +metric-learn=0.6.2=pypi_0 +micawber=0.5.3=pypi_0 +minio=7.0.4=pypi_0 +missingno=0.5.0=pypi_0 +mistune=0.8.4=py38h497a2fe_1004 +mkl=2021.3.0=h726a3e6_557 +mkl-devel=2021.3.0=ha770c72_558 +mkl-include=2021.3.0=h726a3e6_557 +mkl-service=2.4.0=py38h497a2fe_0 +mkldnn=0.16.1=0 +mlflow=1.18.0=pypi_0 +mlxtend=0.18.0=pypi_0 +mmdnn=0.3.1=pypi_0 +mock=4.0.3=pypi_0 +mongo-connector=3.1.1=pypi_0 +motor=2.4.0=pypi_0 +mpmath=1.2.1=pypi_0 +mrjob=0.7.4=pypi_0 +msgpack=1.0.2=pypi_0 +msgpack-numpy=0.4.7.1=pypi_0 +multidict=5.1.0=py38h497a2fe_1 +multimethod=1.4=pypi_0 +multipledispatch=0.6.0=pypi_0 +multiprocess=0.70.12.2=pypi_0 +multitasking=0.0.9=pypi_0 +murmurhash=1.0.5=pypi_0 +mxnet-cu112=1.8.0.post0=pypi_0 +mypy=0.910=pypi_0 +mypy-extensions=0.4.3=pypi_0 +mysqlclient=2.0.3=pypi_0 +nbclassic=0.3.1=pyhd8ed1ab_1 +nbclient=0.5.3=pypi_0 +nbconvert=5.6.1=py38h32f6830_1 +nbdime=3.1.0=pypi_0 +nbformat=5.1.3=pyhd8ed1ab_0 +nbval=0.9.6=pypi_0 +ncurses=6.2=h58526e2_4 +neo4j-driver=4.3.1=pypi_0 +nest-asyncio=1.5.1=pypi_0 +netifaces=0.11.0=pypi_0 +networkx=2.5.1=pypi_0 +nevergrad=0.4.3.post4=pypi_0 +ninja=1.10.2=h4bd325d_0 +nltk=3.6.2=pypi_0 +nodejs=16.13.1=hb931c9a_0 +nose=1.3.7=pypi_0 +nose2=0.10.0=pypi_0 +notebook=6.4.0=pyha770c72_0 +nox=2021.6.12=pypi_0 +numba=0.53.1=pypi_0 +numexpr=2.7.3=py38h51da96c_0 +numpy=1.19.5=py38h18fd61f_1 +nvidia-ml-py=11.450.51=pypi_0 +nvidia-ml-py3=7.352.0=pypi_0 +oauth2client=4.1.3=pypi_0 +oauthlib=3.1.1=pypi_0 +odo=0.5.0=pypi_0 +omegaconf=2.1.0=pypi_0 +onnx=1.9.0=pypi_0 +onnxruntime-gpu=1.8.0=pypi_0 +onnxruntime-training=1.8.0=pypi_0 +opencv-python=4.5.1.48=pypi_0 +opencv-python-headless=4.5.1.48=pypi_0 +openpyxl=3.0.7=pypi_0 +openssl=1.1.1s=h7f8727e_0 +opt-einsum=3.3.0=pypi_0 +optuna=2.8.0=pypi_0 +packaging=20.9=pypi_0 +pamela=1.0.0=pypi_0 +pandarallel=1.5.2=pypi_0 +pandas=1.2.5=pypi_0 +pandas-datareader=0.9.0=pypi_0 +pandas-profiling=2.13.0=pypi_0 +pandas-summary=0.0.7=pypi_0 +pandasql=0.7.3=pypi_0 +pandoc=2.14.0.3=h7f98852_0 +pandocfilters=1.4.2=py_1 +panel=0.11.3=pypi_0 +papermill=2.3.3=pypi_0 +param=1.11.1=pypi_0 +paramiko=2.7.2=pypi_0 +parse=1.19.0=pypi_0 +parsedatetime=2.6=pypi_0 +parsel=1.6.0=pypi_0 +parso=0.7.1=pypi_0 +partd=1.2.0=pypi_0 +pastel=0.2.1=pypi_0 +patchelf=0.11=he1b5a44_0 +path=16.0.0=pypi_0 +path-and-address=2.0.1=pypi_0 +path-py=12.5.0=pypi_0 +pathlib2=2.3.6=pypi_0 +pathos=0.2.8=pypi_0 +pathspec=0.8.1=pypi_0 +pathy=0.6.0=pypi_0 +patsy=0.5.1=pypi_0 +pbr=5.6.0=pypi_0 +peewee=3.14.4=pypi_0 +pep517=0.10.0=pypi_0 +petl=1.7.4=pypi_0 +pexpect=4.8.0=pyh9f0ad1d_2 +phik=0.11.2=pypi_0 +pickledb=0.9.2=pypi_0 +pickleshare=0.7.5=py_1003 +pillow=8.2.0=pypi_0 +pip=21.1.3=pyhd8ed1ab_0 +pip-tools=6.2.0=pypi_0 +pipdeptree=2.0.0=pypi_0 +pipenv=2021.5.29=pypi_0 +pipreqs=0.4.10=pypi_0 +pipx=0.16.3=pypi_0 +pivottablejs=0.9.0=pypi_0 +pkginfo=1.7.1=pyhd8ed1ab_0 +plotly=5.0.0=pypi_0 +pluggy=0.13.1=pypi_0 +poetry=1.1.7=pypi_0 +poetry-core=1.0.3=pypi_0 +pooch=1.4.0=pypi_0 +portalocker=2.3.0=pypi_0 +pox=0.3.0=pypi_0 +ppft=1.6.6.4=pypi_0 +premailer=3.9.0=pypi_0 +preshed=3.0.5=pypi_0 +pretty-errors=1.2.22=pypi_0 +prettytable=2.1.0=pypi_0 +priority=1.3.0=pypi_0 +progressbar2=3.53.1=pypi_0 +prometheus-flask-exporter=0.18.2=pypi_0 +prometheus_client=0.11.0=pyhd8ed1ab_0 +promise=2.3=pypi_0 +prompt-toolkit=3.0.19=pyha770c72_0 +protego=0.1.16=pypi_0 +protobuf=3.17.3=pypi_0 +protobuf3-to-dict=0.1.5=pypi_0 +psutil=5.8.0=py38h497a2fe_1 +psycopg2=2.9.1=pypi_0 +ptyprocess=0.7.0=pyhd3deb0d_0 +pulp=2.4=py38h578d9bd_0 +py=1.10.0=pypi_0 +py-cpuinfo=8.0.0=pypi_0 +py-lief=0.11.5=py38h709712a_0 +py-spy=0.3.7=pypi_0 +py3nvml=0.2.6=pypi_0 +pyahocorasick=1.4.2=pypi_0 +pyaml=20.4.0=pypi_0 +pyarrow=4.0.1=pypi_0 +pyasn1=0.4.8=pypi_0 +pyasn1-modules=0.2.8=pypi_0 +pybind11=2.6.2=pypi_0 +pycodestyle=2.7.0=pypi_0 +pycosat=0.6.3=py38h497a2fe_1006 +pycparser=2.20=pyh9f0ad1d_2 +pyct=0.4.8=pypi_0 +pycuda=2021.1=pypi_0 +pydantic=1.7.4=pypi_0 +pydeck=0.6.2=pypi_0 +pydispatcher=2.0.5=pypi_0 +pydocstyle=6.1.1=pypi_0 +pydub=0.25.1=pypi_0 +pyecharts=1.9.0=pypi_0 +pyee=8.1.0=pypi_0 +pyexcel-io=0.6.4=pypi_0 +pyexcel-xlsx=0.6.0=pypi_0 +pyflakes=2.3.1=pypi_0 +pyfunctional=1.4.3=pypi_0 +pyglet=1.5.15=pypi_0 +pygments=2.9.0=pyhd8ed1ab_0 +pygpu=0.7.6=py38h5c078b8_1002 +pyhdb=0.3.4=pypi_0 +pyicu=2.7.4=pypi_0 +pyinstrument=3.4.2=pypi_0 +pyinstrument-cext=0.2.4=pypi_0 +pyjwt=1.7.1=pypi_0 +pylama=7.7.1=pypi_0 +pylev=1.4.0=pypi_0 +pylint=2.8.3=pypi_0 +pyls-black=0.4.7=pypi_0 +pyls-isort=0.2.2=pypi_0 +pyls-mypy=0.1.8=pypi_0 +pymdstat=0.4.2=pypi_0 +pymongo=3.11.4=pypi_0 +pymysql=1.0.2=pypi_0 +pynacl=1.4.0=pypi_0 +pynndescent=0.5.4=pypi_0 +pynvml=11.0.0=pypi_0 +pyod=0.8.9=pypi_0 +pyodbc=4.0.30=pypi_0 +pyopenssl=20.0.1=pyhd8ed1ab_0 +pyparsing=2.4.7=pyh9f0ad1d_0 +pyperclip=1.8.2=pypi_0 +pyphen=0.11.0=pypi_0 +pyppeteer=0.2.5=pypi_0 +pyquery=1.4.3=pypi_0 +pyro-api=0.1.2=pypi_0 +pyro-ppl=1.6.0=pypi_0 +pyrsistent=0.17.3=py38h497a2fe_2 +pysocks=1.7.1=py38h578d9bd_3 +pyte=0.8.0=pypi_0 +pytesseract=0.3.7=pypi_0 +pytest=6.2.4=pypi_0 +python=3.8.10=h49503c6_1_cpython +python-crontab=2.5.1=pypi_0 +python-daemon=2.3.0=pypi_0 +python-dateutil=2.8.1=py_0 +python-editor=1.0.4=pypi_0 +python-graphviz=0.8.4=pypi_0 +python-json-logger=2.0.1=pypi_0 +python-jsonrpc-server=0.4.0=pypi_0 +python-language-server=0.36.2=pypi_0 +python-libarchive-c=3.1=py38h578d9bd_0 +python-louvain=0.15=pypi_0 +python-lsp-jsonrpc=1.0.0=pypi_0 +python-lsp-server=1.1.0=pypi_0 +python-magic=0.4.24=pypi_0 +python-slugify=5.0.2=pypi_0 +python-telegram-bot=13.7=pypi_0 +python-utils=2.5.6=pypi_0 +python_abi=3.8=2_cp38 +pythreejs=2.3.0=pypi_0 +pytimeparse=1.1.8=pypi_0 +pytools=2021.2.7=pypi_0 +pytorch-ignite=0.4.5=pypi_0 +pytorch-nlp=0.5.0=pypi_0 +pytz=2021.1=pyhd8ed1ab_0 +pyviz-comms=2.1.0=pypi_0 +pywavelets=1.1.1=pypi_0 +pyyaml=5.4.1=py38h497a2fe_0 +pyzmq=22.1.0=py38h2035c66_0 +qgrid=1.3.1=pypi_0 +qtconsole=5.1.1=pypi_0 +qtpy=1.9.0=pypi_0 +querystring-parser=1.2.4=pypi_0 +queuelib=1.6.1=pypi_0 +ranger-fm=1.9.3=pypi_0 +ratelim=0.1.6=pypi_0 +ratelimiter=1.2.0=py_1002 +rdflib=5.0.0=pypi_0 +readline=8.1=h46c0cb4_0 +readme-renderer=29.0=pypi_0 +redis=3.5.3=pypi_0 +regex=2021.4.4=pypi_0 +remote-ikernel=0.4.6=pypi_0 +reproc=14.2.1=h36c2ea0_0 +reproc-cpp=14.2.1=h58526e2_0 +requests=2.25.1=pyhd3deb0d_0 +requests-html=0.10.0=pypi_0 +requests-oauthlib=1.3.0=pypi_0 +requests-toolbelt=0.9.1=pypi_0 +requests-unixsocket=0.2.0=py_0 +resampy=0.2.2=pypi_0 +rfc3986=1.5.0=pypi_0 +rich=10.4.0=pypi_0 +ripgrep=13.0.0=habb4d0f_0 +rope=0.19.0=pypi_0 +rsa=4.7.2=pypi_0 +ruamel-yaml=0.17.10=pypi_0 +ruamel-yaml-clib=0.2.6=pypi_0 +ruamel_yaml=0.15.80=py38h497a2fe_1004 +rx=1.6.1=pypi_0 +s3transfer=0.4.2=pypi_0 +sacrebleu=1.5.1=pypi_0 +sacremoses=0.0.45=pypi_0 +safety=1.10.3=pypi_0 +sagemaker=2.47.1=pypi_0 +scalene=1.3.6=pypi_0 +scikit-cuda=0.5.3=pypi_0 +scikit-image=0.18.1=pypi_0 +scikit-learn=0.24.2=py38hdc147b9_0 +scikit-optimize=0.8.1=pypi_0 +scikit-plot=0.3.7=pypi_0 +scikit-surprise=1.1.1=pypi_0 +scipy=1.7.0=py38h7b17777_0 +scrapy=2.5.0=pypi_0 +seaborn=0.11.1=pypi_0 +secretstorage=3.3.1=pypi_0 +selenium=3.141.0=pypi_0 +send2trash=1.7.1=pyhd8ed1ab_0 +sentencepiece=0.1.96=pypi_0 +service-identity=21.1.0=pypi_0 +setuptools=49.6.0=py38h578d9bd_3 +shap=0.39.0=pypi_0 +shapely=1.7.1=pypi_0 +shellingham=1.4.0=pypi_0 +simpervisor=0.4=pypi_0 +simplejson=3.17.2=pypi_0 +six=1.15.0=pypi_0 +sklearn-pandas=2.2.0=pypi_0 +skorch=0.10.0=pypi_0 +slicer=0.0.7=pypi_0 +smart_open=5.1.0=pyhd8ed1ab_1 +smdebug-rulesconfig=1.0.1=pypi_0 +smmap=4.0.0=pyhd8ed1ab_1 +snakemake-minimal=6.5.3=pyhdfd78af_0 +sniffio=1.2.0=py38h578d9bd_1 +snowballstemmer=2.1.0=pypi_0 +sortedcontainers=2.4.0=pypi_0 +soundfile=0.10.3.post1=pypi_0 +soupsieve=2.2.1=pypi_0 +spacy=3.0.6=pypi_0 +spacy-legacy=3.0.8=pypi_0 +speedtorch=0.1.6=pypi_0 +spektral=1.0.6=pypi_0 +sqlalchemy=1.4.19=pypi_0 +sqlite=3.36.0=h9cd32fc_0 +sqlparse=0.4.1=pypi_0 +srsly=2.4.1=pypi_0 +starlette=0.14.2=pypi_0 +statsmodels=0.12.2=pypi_0 +stevedore=3.3.0=pypi_0 +stop-words=2018.7.23=pypi_0 +stopit=1.1.2=py_0 +stormssh=0.7.0=pypi_0 +streamlit=0.83.0=pypi_0 +streamz=0.6.2=pypi_0 +sympy=1.8=pypi_0 +tables=3.6.1=pypi_0 +tablib=3.0.0=pypi_0 +tabulate=0.8.9=pyhd8ed1ab_0 +tangled-up-in-unicode=0.1.0=pypi_0 +tbb=2021.3.0=h4bd325d_0 +tblib=1.7.0=pypi_0 +tenacity=6.3.1=pypi_0 +tensorboard=2.5.0=pypi_0 +tensorboard-data-server=0.6.1=pypi_0 +tensorboard-plugin-wit=1.8.0=pypi_0 +tensorboardx=2.3=pypi_0 +tensorflow-addons=0.13.0=pypi_0 +tensorflow-datasets=4.3.0=pypi_0 +tensorflow-estimator=2.5.0=pypi_0 +tensorflow-gpu=2.5.0=pypi_0 +tensorflow-hub=0.12.0=pypi_0 +tensorflow-metadata=1.1.0=pypi_0 +tensorflow-model-optimization=0.6.0=pypi_0 +tensorflow-probability=0.13.0=pypi_0 +tensorflow-text=2.5.0=pypi_0 +tensorflowonspark=2.2.4=pypi_0 +tensorlayer=2.2.3=pypi_0 +tensorly=0.6.0=pypi_0 +tensorpack=0.11=pypi_0 +termcolor=1.1.0=pypi_0 +terminado=0.10.1=py38h578d9bd_0 +tesserocr=2.5.2=pypi_0 +testpath=0.5.0=pyhd8ed1ab_0 +text-unidecode=1.3=pypi_0 +textacy=0.11.0=pypi_0 +textblob=0.15.3=pypi_0 +textdistance=4.2.1=pypi_0 +textwrap3=0.9.2=pypi_0 +tf-explain=0.3.0=pypi_0 +tflearn=0.5.0=pypi_0 +theano=1.0.5=pypi_0 +thefuck=3.31=pypi_0 +thinc=8.0.6=pypi_0 +threadpoolctl=2.2.0=pyh8a188c0_0 +tifffile=2021.7.2=pypi_0 +tinydb=4.5.0=pypi_0 +tk=8.6.10=h21135ba_1 +tokenizers=0.10.3=pypi_0 +toml=0.10.2=pypi_0 +tomlkit=0.7.2=pypi_0 +toolz=0.11.1=pypi_0 +toposort=1.6=pyhd8ed1ab_0 +torch=1.9.0+cu111=pypi_0 +torch-geometric=1.7.2=pypi_0 +torchaudio=0.9.0=pypi_0 +torchsummary=1.5.1=pypi_0 +torchtext=0.10.0=pypi_0 +torchvision=0.10.0+cu111=pypi_0 +tornado=6.1=py38h497a2fe_1 +tox=3.23.1=pypi_0 +tpot=0.11.7=pypi_0 +tqdm=4.61.1=pypi_0 +traitlets=5.0.5=py_0 +traittypes=0.2.1=pypi_0 +transformers=4.8.1=pypi_0 +tslearn=0.5.1.0=pypi_0 +twilio=6.61.0=pypi_0 +twine=3.4.1=pypi_0 +twisted=21.2.0=pypi_0 +typeguard=2.12.1=pypi_0 +typer=0.3.2=pypi_0 +typing-extensions=3.7.4=pypi_0 +tzlocal=2.1=pypi_0 +ujson=4.0.2=pypi_0 +umap-learn=0.5.1=pypi_0 +update-checker=0.18.0=pypi_0 +uritemplate=3.0.1=pypi_0 +urllib3=1.26.6=pyhd8ed1ab_0 +userpath=1.6.0=pypi_0 +uvicorn=0.14.0=pypi_0 +validators=0.18.2=pypi_0 +vega=3.5.0=pypi_0 +vega-datasets=0.9.0=pypi_0 +vine=5.0.0=pypi_0 +virtualenv=20.4.7=pypi_0 +virtualenv-clone=0.5.4=pypi_0 +virtualenvwrapper=4.8.4=pypi_0 +visions=0.7.1=pypi_0 +vispy=0.6.6=pypi_0 +vowpalwabbit=8.10.2=pypi_0 +w3lib=1.22.0=pypi_0 +wasabi=0.8.2=pypi_0 +watchdog=2.1.3=pypi_0 +wcwidth=0.2.5=pyh9f0ad1d_2 +webencodings=0.5.1=py_1 +websocket-client=0.57.0=py38h578d9bd_4 +websockets=9.1=pypi_0 +werkzeug=2.0.1=pypi_0 +wheel=0.36.2=pyhd3deb0d_0 +widgetsnbextension=3.5.1=pypi_0 +witwidget=1.8.0=pypi_0 +wordcloud=1.8.1=pypi_0 +wrapt=1.12.1=py38h497a2fe_3 +xarray=0.18.2=pypi_0 +xgboost=1.4.2=pypi_0 +xlearn=0.40a1=pypi_0 +xlrd=2.0.1=pypi_0 +xmltodict=0.12.0=pypi_0 +xz=5.2.5=h516909a_1 +yacs=0.1.8=pypi_0 +yagmail=0.14.256=pypi_0 +yaml=0.2.5=h516909a_0 +yapf=0.31.0=pypi_0 +yappi=1.3.2=pypi_0 +yarg=0.1.9=pypi_0 +yarl=1.5.1=py38h1e0a361_0 +yfinance=0.1.59=pypi_0 +you-get=0.4.1527=pypi_0 +zeromq=4.3.4=h9c3ff4c_0 +zict=2.0.0=pypi_0 +zipp=3.5.0=pyhd8ed1ab_0 +zlib=1.2.11=h516909a_1010 +zope-interface=5.4.0=pypi_0 +zstd=1.5.0=ha95c52a_0 + +2022-12-08 at 10:02:40 | ENV | **************************************************************************************************** +2022-12-08 at 10:02:40 | ENV | Collecting package versions of pip environment : /workspace/macs-ai/.venv/bin/pip + +2022-12-08 at 10:02:40 | ENV | aiofiles==22.1.0 +aiohttp-retry==2.8.3 +aiohttp==3.8.3 +aiosignal==1.3.1 +alabaster==0.7.12 +alembic==1.8.1 +amqp==5.1.1 +antlr4-python3-runtime==4.9.3 +anyio==3.6.2 +appdirs==1.4.4 +argon2-cffi-bindings==21.2.0 +argon2-cffi==21.3.0 +astor==0.8.1 +astroid==2.12.12 +asttokens==2.1.0 +async-timeout==4.0.2 +asyncssh==2.12.0 +atpublic==3.1.1 +attrs==22.1.0 +autograd-gamma==0.5.0 +autograd==1.5 +babel==2.11.0 +backcall==0.2.0 +beautifulsoup4==4.11.1 +billiard==3.6.4.0 +black==22.10.0 +bleach==5.0.1 +bokeh==2.4.1 +boto3==1.26.6 +botocore==1.29.6 +cachecontrol==0.12.11 +cachetools==5.2.0 +cachy==0.3.0 +catalogue==2.0.8 +celery==5.2.7 +certifi==2022.9.24 +cffi==1.15.1 +cfgv==3.3.1 +chardet==3.0.4 +charset-normalizer==2.1.1 +classic-algos==1.7.3 +cleo==1.0.0a5 +click-didyoumean==0.3.0 +click-plugins==1.1.1 +click-repl==0.2.0 +click-spinner==0.1.10 +click==7.1.2 +cloudpickle==2.2.0 +colorama==0.4.6 +commonmark==0.9.1 +configobj==5.0.6 +contourpy==1.0.6 +coverage==6.5.0 +crashtest==0.3.1 +cryptography==38.0.3 +cycler==0.11.0 +databricks-cli==0.17.3 +dataset-report==0.2 +debugpy==1.6.3 +decorator==5.1.1 +deepzoom==0.3.0 +defusedxml==0.7.1 +dictdiffer==0.9.0 +dill==0.3.6 +diskcache==5.4.0 +distlib==0.3.6 +distro==1.8.0 +doc8==0.11.2 +docformatter==1.5.0 +docker==6.0.1 +docutils==0.19 +dpath==2.0.6 +dulwich==0.20.50 +dvc-data==0.25.3 +dvc-gs==2.20.0 +dvc-http==2.27.2 +dvc-objects==0.12.2 +dvc-render==0.0.12 +dvc-task==0.1.5 +dvc==2.34.2 +dvclive==1.0.1 +efficientnet-pytorch==0.6.3 +einops==0.3.2 +entrypoints==0.4 +et-xmlfile==1.1.0 +exceptiongroup==1.0.1 +executing==1.2.0 +fastapi==0.64.0 +fastjsonschema==2.16.2 +filelock==3.8.0 +flake8==5.0.4 +flask==2.2.2 +flatten-dict==0.4.2 +flufl.lock==7.1.1 +fonttools==4.38.0 +formulaic==0.5.2 +frozenlist==1.3.3 +fsspec==2022.11.0 +ftfy==6.1.1 +funcy==1.17 +future==0.18.2 +gcsfs==2022.11.0 +gitdb==4.0.9 +gitpython==3.1.29 +google-api-core==2.10.2 +google-auth-oauthlib==0.7.1 +google-auth==2.14.1 +google-cloud-core==2.3.2 +google-cloud-storage==2.6.0 +google-crc32c==1.5.0 +google-resumable-media==2.4.0 +googleapis-common-protos==1.56.4 +gprof2dot==2022.7.29 +grandalf==0.6 +graphlib-backport==1.0.3 +greenlet==2.0.1 +gunicorn==20.1.0 +h11==0.14.0 +html5lib==1.1 +htmlmin==0.1.12 +hydra-core==1.2.0 +identify==2.5.8 +idna==2.8 +imagehash==4.3.1 +imageio==2.22.4 +imagesize==1.4.1 +importlib-metadata==5.0.0 +importlib-resources==5.10.0 +iniconfig==1.1.1 +interface-meta==1.3.0 +ipdb==0.13.9 +ipykernel==6.17.1 +ipython-genutils==0.2.0 +ipython==8.6.0 +ipywidgets==8.0.2 +isort==5.10.1 +iterative-telemetry==0.0.6 +itsdangerous==2.1.2 +jaraco.classes==3.2.3 +jedi==0.18.1 +jeepney==0.8.0 +jinja2==3.0.2 +jmespath==1.0.1 +joblib==1.1.1 +joypy==0.2.6 +jsonpath-ng==1.5.3 +jsonschema==4.17.0 +jupyter-client==7.4.4 +jupyter-core==5.0.0 +jupyter-server==1.23.1 +jupyterlab-pygments==0.2.2 +jupyterlab-widgets==3.0.3 +keyring==23.11.0 +kiwisolver==1.4.4 +kombu==5.2.4 +lazy-object-proxy==1.8.0 +lifelines==0.27.3 +llvmlite==0.39.1 +lockfile==0.12.2 +loguru==0.5.3 +lxml==4.9.1 +m2r==0.2.1 +macs-ai==0.0.0 +mailchecker==5.0.3 +mako==1.2.3 +markupsafe==2.1.1 +matplotlib-inline==0.1.6 +matplotlib==3.5.3 +mccabe==0.7.0 +missingno==0.5.1 +mistune==0.8.4 +mlflow==1.30.0 +more-itertools==9.0.0 +msgpack==1.0.4 +multidict==6.0.2 +multimethod==1.8 +mypy-extensions==0.4.3 +mypy==0.971 +nanotime==0.5.2 +nbclassic==0.4.8 +nbclient==0.7.0 +nbconvert==6.5.4 +nbformat==5.7.0 +nbsphinx==0.6.1 +nest-asyncio==1.5.6 +networkx==2.8.8 +nodeenv==1.7.0 +notebook-shim==0.2.2 +notebook==6.5.2 +numba==0.56.4 +numpy==1.23.4 +nvidia-cublas-cu11==11.10.3.66 +nvidia-cuda-nvrtc-cu11==11.7.99 +nvidia-cuda-runtime-cu11==11.7.99 +nvidia-cudnn-cu11==8.5.0.96 +oauthlib==3.2.2 +omegaconf==2.2.3 +openpyxl==3.0.10 +openslide-python==1.1.2 +overrides==1.9 +owkin-dataset-format==8.5.4 +owkin-galaxy-common==9.2.0 +owkin-params==8.5.4 +owkin-slidelib==9.2.0 +owkin-tilingtoolv2==9.5.0 +packaging==21.3 +pandas-profiling==3.3.0 +pandas-stubs==1.5.1.221024 +pandas==1.4.4 +pandoc==1.1.0 +pandocfilters==1.5.0 +parso==0.8.3 +pathlib2==2.3.7.post1 +pathspec==0.9.0 +patsy==0.5.3 +pbr==5.11.0 +pexpect==4.8.0 +phik==0.12.2 +phonenumbers==8.13.0 +pickleshare==0.7.5 +pillow==8.4.0 +pip==22.3.1 +pkginfo==1.8.3 +pkgutil-resolve-name==1.3.10 +platformdirs==2.5.3 +pluggy==1.0.0 +plumbum==1.8.0 +ply==3.11 +poetry-core==1.3.2 +poetry-plugin-export==1.2.0 +poetry==1.2.2 +pre-commit==2.20.0 +prometheus-client==0.15.0 +prometheus-flask-exporter==0.20.3 +prompt-toolkit==3.0.32 +protobuf==4.21.9 +psutil==5.9.4 +ptyprocess==0.7.0 +pure-eval==0.2.2 +pyasn1-modules==0.2.8 +pyasn1==0.4.8 +pycodestyle==2.9.1 +pycparser==2.21 +pydantic==1.4 +pydata-sphinx-theme==0.10.1 +pydocstyle==6.1.1 +pydot==1.4.2 +pyflakes==2.5.0 +pygit2==1.11.1 +pygments==2.13.0 +pygtrie==2.3.2 +pyjwt==2.6.0 +pylev==1.4.0 +pylint==2.15.5 +pynndescent==0.5.8 +pyparsing==2.4.7 +pyrsistent==0.19.2 +pytest-cov==3.0.0 +pytest-profiling==1.7.0 +pytest-runner==6.0.0 +pytest-sphinx==0.3.1 +pytest==7.2.0 +python-benedict==0.27.0 +python-dateutil==2.8.2 +python-fsutil==0.7.0 +python-pptx==0.6.18 +python-slugify==6.1.2 +pytz==2022.6 +pywavelets==1.4.1 +pyyaml==6.0 +pyzmq==24.0.1 +querystring-parser==1.2.4 +recommonmark==0.7.1 +requests-oauthlib==1.3.1 +requests-toolbelt==0.9.1 +requests==2.28.1 +restructuredtext-lint==1.4.0 +rich==12.6.0 +roc-utils==0.2.2 +rsa==4.9 +ruamel.yaml.clib==0.2.7 +ruamel.yaml==0.17.21 +s3transfer==0.6.0 +scikit-image==0.19.3 +scikit-learn==1.1.3 +scipy==1.9.3 +scmrepo==0.1.3 +seaborn==0.11.2 +secretstorage==3.3.3 +send2trash==1.8.0 +setuptools-scm==7.0.5 +setuptools==65.5.1 +shapely==1.6.4.post2 +shellingham==1.5.0 +shortuuid==1.0.10 +shtab==1.5.7 +six==1.16.0 +smmap==5.0.0 +sniffio==1.3.0 +snowballstemmer==2.2.0 +soupsieve==2.3.2.post1 +sphinx-autodoc-typehints==1.19.5 +sphinx-gallery==0.10.1 +sphinx-paramlinks==0.4.3 +sphinx==5.3.0 +sphinxcontrib-applehelp==1.0.2 +sphinxcontrib-devhelp==1.0.2 +sphinxcontrib-fulltoc==1.2.0 +sphinxcontrib-htmlhelp==2.0.0 +sphinxcontrib-jsmath==1.0.1 +sphinxcontrib-mermaid==0.7.1 +sphinxcontrib-mockautodoc==0.0.1.dev20130518 +sphinxcontrib-qthelp==1.0.3 +sphinxcontrib-serializinghtml==1.1.5 +sqlalchemy==1.4.43 +sqlparse==0.4.3 +stack-data==0.6.0 +starlette==0.13.6 +statsmodels==0.13.5 +stevedore==4.1.1 +tabulate==0.9.0 +tangled-up-in-unicode==0.2.0 +terminado==0.17.0 +text-unidecode==1.3 +threadpoolctl==3.1.0 +tifffile==2022.10.10 +tile-shapley-bschmauch==0.0.1 +tilesprojector==0.1.0 +tinycss2==1.2.1 +toml==0.10.2 +tomli==2.0.1 +tomlkit==0.11.6 +torch==1.11.0 +torchvision==0.12.0 +tornado==6.2 +tqdm==4.64.1 +traitlets==5.5.0 +typeguard==2.4.1 +typer==0.3.2 +types-docutils==0.18.3 +types-jinja2==2.11.9 +types-markupsafe==1.1.10 +types-python-dateutil==2.8.19.3 +types-pytz==2022.6.0.1 +types-pyyaml==6.0.12.2 +types-setuptools==57.4.18 +typing-extensions==4.4.0 +umap-learn==0.5.3 +untokenize==0.1.1 +urllib3==1.25.11 +uvicorn==0.19.0 +vhisto==1.3.1 +vine==5.0.0 +virtualenv==20.16.6 +visions==0.7.5 +voluptuous==0.13.1 +watchdog==2.1.9 +wcwidth==0.2.5 +webencodings==0.5.1 +websocket-client==1.4.2 +werkzeug==2.2.2 +wheel==0.38.4 +widgetsnbextension==4.0.3 +wrapt==1.14.1 +xlrd==2.0.1 +xlsxwriter==3.0.3 +xmltodict==0.13.0 +xyzservices==2022.9.0 +yarl==1.8.1 +zc.lockfile==2.0 +zipp==3.10.0 diff --git a/features/exp_08_12_2022_10:02:32:778.log b/features/exp_08_12_2022_10:02:32:778.log new file mode 100644 index 0000000000000000000000000000000000000000..ebecb35fa410f9f544251c38c2b548115663fc07 --- /dev/null +++ b/features/exp_08_12_2022_10:02:32:778.log @@ -0,0 +1,8 @@ +2022-12-08 at 10:02:32 | DEBUG | logging.py:init_logging:108 | User: root @ host : ws-csaillard-mlhub-erlangen +2022-12-08 at 10:02:40 | INFO | logging.py:init_logging:113 | System and python env info logged to log file .... +2022-12-08 at 10:02:40 | DEBUG | tile.py:main:83 | python tile.py --cohort TCGA_BLCA --matter_detector_name bunet --extractor_name wide_resnet_50_2_coad_moco_v2 --checkpoint checkpoint-85200 --save_dir /opt/storage/preprocessed/Bladder_Project_Erlangen_data_science/features/ +2022-12-08 at 10:02:40 | INFO | tile.py:main:84 | {'cohort': 'TCGA_BLCA', 'matter_detector_name': 'bunet', 'extractor_name': 'wide_resnet_50_2_coad_moco_v2', 'checkpoint': 'checkpoint-85200', 'device': None, 'mpp': 0.5, 'save_dir': PosixPath('/opt/storage/preprocessed/Bladder_Project_Erlangen_data_science/features'), 'path_coords': None} +2022-12-08 at 10:02:40 | INFO | tile.py:main:85 | path slides : /opt/storage/preprocessed/Bladder_Project_Erlangen_data_science/slides/TCGA_BLCA +2022-12-08 at 10:02:40 | INFO | tile.py:main:86 | path save : /opt/storage/preprocessed/Bladder_Project_Erlangen_data_science/features/features_TCGA_BLCA_wide_resnet_50_2_coad_moco_v2/checkpoint-85200/mpp_0.5 +2022-12-08 at 10:02:40 | INFO | tile.py:main:90 | Found 416 slides left to tile +2022-12-08 at 10:02:40 | INFO | bunet.py:__init__:60 | Loading BUNet from classic-algo's hub.