OpenRaiser/Intern-Atlas huggingface dataset:
A Novel Hierarchical Integration Method for Efficient Model Merging in Medical LLMs
Venue: arXiv cs.LG 2025
Year: 2025

Large Language Models (LLMs) face significant challenges in distributed healthcare, including consolidating specialized domain knowledge across institutions while maintaining privacy, reducing computational overhead, and preventing catastrophic forgetting during model updates.This paper presents a systematic evaluation of six parameter-space merging techniques applied to two architecturally compatible medical LLMs derived from the Mistral-7B base model. We introduce a novel hierarchical method that combines selective Optimal Transport (OT) alignment for attention layers with cosine similarity-weighted interpolation, designed to address permutation variance while minimizing computational overhead for edge deployment scenarios. Our study evaluates Task Arithmetic, Linear Averaging, DARE-TIES, DELLA, Breadcrumbs, and our Hierarchical approach across five medical benchmarks. Results demonstrate that architecturally compatible models benefit significantly from simple averaging methods, with Task Arithmetic achieving 45.80% accuracy on MedQA, outperforming complex pruning-based approaches. These findings offer critical insights for the deployment of distributed medical AI in resource-constrained IoT environments, where computational efficiency and model compatibility are paramount. Our work establishes that for architecturally compatible models, simple averaging provides a robust and computationally efficient baseline for knowledge consolidation, offering a pragmatic path forward for scalable medical AI systems.
Generalized Denoising Diffusion Codebook Models (gDDCM): Tokenizing images using a pre-trained diffusion model
Venue: arXiv cs.CV 2025
Year: 2025

Denoising diffusion models have emerged as a dominant paradigm in image generation. Discretizing image data into tokens is a critical step for effectively integrating images with Transformer and other architectures. Although the Denoising Diffusion Codebook Models (DDCM) pioneered the use of pre-trained diffusion models for image tokenization, it strictly relies on the traditional discrete-time DDPM architecture. Consequently, it fails to adapt to modern continuous-time variants-such as Flow Matching and Consistency Models-and suffers from inefficient sampling in high-noise regions. To address these limitations, this paper proposes the Generalized Denoising Diffusion Codebook Models (gDDCM). We establish a unified theoretical framework and introduce a generic "De-noise and Back-trace" sampling strategy. By integrating a deterministic ODE denoising step with a residual-aligned noise injection step, our method resolves the challenge of adaptation. Furthermore, we introduce a backtracking parameter $p$ and significantly enhance tokenization ability. Extensive experiments on CIFAR10 and LSUN Bedroom datasets demonstrate that gDDCM achieves comprehensive compatibility with mainstream diffusion variants and significantly outperforms DDCM in terms of reconstruction quality and perceptual fidelity.
Exploring Multi-Table Retrieval Through Iterative Search
Venue: arXiv cs.IR 2025
Year: 2025

Open-domain question answering over datalakes requires retrieving and composing information from multiple tables, a challenging subtask that demands semantic relevance and structural coherence (e.g., joinability). While exact optimization methods like Mixed-Integer Programming (MIP) can ensure coherence, their computational complexity is often prohibitive. Conversely, simpler greedy heuristics that optimize for query coverage alone often fail to find these coherent, joinable sets. This paper frames multi-table retrieval as an iterative search process, arguing this approach offers advantages in scalability, interpretability, and flexibility. We propose a general framework and a concrete instantiation: a fast, effective Greedy Join-Aware Retrieval algorithm that holistically balances relevance, coverage, and joinability. Experiments across 5 NL2SQL benchmarks demonstrate that our iterative method achieves competitive retrieval performance compared to the MIP-based approach while being 4-400x faster depending on the benchmark and search space settings. This work highlights the potential of iterative heuristics for practical, scalable, and composition-aware retrieval.
Evaluation of Domain-Specific Architectures for General-Purpose Applications in Apple Silicon
Venue: arXiv cs.PF 2025
Year: 2025

The rise of AI and its growing computational demands have driven the integration of domain-specific accelerators (such as GPUs, TPUs, and NPUs) across the entire computing infrastructure. Following the precedent set by the GPGPU which popularized GPUs for general-purpose tasks, this research asks whether this phenomenon can be replicated with specialized accelerators like NPUs in new contexts. This paper evaluates the potential of the Apple Neural Engine (ANE) designed for high energy efficiency in Machine Learning workloads, in the context of general-purpose HPC applications. We evaluate the performance and energy consumption of classic HPC algorithms such as GEMM, Jacobi or Multigrid methods on Apple's ANE across the M1 and the latest M4 architectures. Results confirm that, when algorithms are properly adapted, the ANE achieves competitive performance (up to 3.8 TFlops on the M4-Pro, comparable to the GPU's 4.7 TFlops on the same SoC for GEMM operation) while demonstrating significantly superior energy efficiency (e.g., GEMM consumes 5.2 Watts on the ANE versus 24 Watts on GPU counterpart in M4 architectures).
Artificial Intelligence-Enabled Spirometry for Early Detection of Right Heart Failure
Venue: arXiv cs.LG 2025
Year: 2025

Right heart failure (RHF) is a disease characterized by abnormalities in the structure or function of the right ventricle (RV), which is associated with high morbidity and mortality. Lung disease often causes increased right ventricular load, leading to RHF. Therefore, it is very important to screen out patients with cor pulmonale who develop RHF from people with underlying lung diseases. In this work, we propose a self-supervised representation learning method to early detecting RHF from patients with cor pulmonale, which uses spirogram time series to predict patients with RHF at an early stage. The proposed model is divided into two stages. The first stage is the self-supervised representation learning-based spirogram embedding (SLSE) network training process, where the encoder of the Variational autoencoder (VAE-encoder) learns a robust low-dimensional representation of the spirogram time series from the data-augmented unlabeled data. Second, this low-dimensional representation is fused with demographic information and fed into a CatBoost classifier for the downstream RHF prediction task. Trained and tested on a carefully selected subset of 26,617 individuals from the UK Biobank, our model achieved an AUROC of 0.7501 in detecting RHF, demonstrating strong population-level distinction ability. We further evaluated the model on high-risk clinical subgroups, achieving AUROC values of 0.8194 on a test set of 74 patients with chronic kidney disease (CKD) and 0.8413 on a set of 64 patients with valvular heart disease (VHD). These results highlight the model's potential utility in predicting RHF among clinically elevated-risk populations. In conclusion, this study presents a self-supervised representation learning approach combining spirogram time series and demographic data, demonstrating promising potential for early RHF detection in clinical practice.
Trust in Vision-Language Models: Insights from a Participatory User Workshop
Venue: arXiv cs.HC 2025
Year: 2025

With the growing deployment of Vision-Language Models (VLMs), pre-trained on large image-text and video-text datasets, it is critical to equip users with the tools to discern when to trust these systems. However, examining how user trust in VLMs builds and evolves remains an open problem. This problem is exacerbated by the increasing reliance on AI models as judges for experimental validation, to bypass the cost and implications of running participatory design studies directly with users. Following a user-centred approach, this paper presents preliminary results from a workshop with prospective VLM users. Insights from this pilot workshop inform future studies aimed at contextualising trust metrics and strategies for participants' engagement to fit the case of user-VLM interaction.
The Quick Red Fox gets the best Data Driven Classroom Interviews: A manual for an interview app and its associated methodology
Venue: arXiv cs.HC 2025
Year: 2025

Data Driven Classroom Interviews (DDCIs) are an interviewing technique that is facilitated by recent technological developments in the learning analytics community. DDCIs are short, targeted interviews that allow researchers to contextualize students' interactions with a digital learning environment (e.g., intelligent tutoring systems or educational games) while minimizing the amount of time that the researcher interrupts that learning experience, and focusing researcher time on the events they most want to focus on DDCIs are facilitated by a research tool called the Quick Red Fox (QRF)--an open-source server-client Android app that optimizes researcher time by directing interviewers to users that have just displayed an interesting behavior (previously defined by the research team). QRF integrates with existing student modeling technologies (e.g., behavior-sensing, affect-sensing, detection of self-regulated learning) to alert researchers to key moments in a learner's experience. This manual documents the tech while providing training on the processes involved in developing triggers and interview techniques; it also suggests methods of analyses.
Semantic Document Derendering: SVG Reconstruction via Vision-Language Modeling
Venue: arXiv cs.CV 2025
Year: 2025

Multimedia documents such as slide presentations and posters are designed to be interactive and easy to modify. Yet, they are often distributed in a static raster format, which limits editing and customization. Restoring their editability requires converting these raster images back into structured vector formats. However, existing geometric raster-vectorization methods, which rely on low-level primitives like curves and polygons, fall short at this task. Specifically, when applied to complex documents like slides, they fail to preserve the high-level structure, resulting in a flat collection of shapes where the semantic distinction between image and text elements is lost. To overcome this limitation, we address the problem of semantic document derendering by introducing SliDer, a novel framework that uses Vision-Language Models (VLMs) to derender slide images as compact and editable Scalable Vector Graphic (SVG) representations. SliDer detects and extracts attributes from individual image and text elements in a raster input and organizes them into a coherent SVG format. Crucially, the model iteratively refines its predictions during inference in a process analogous to human design, generating SVG code that more faithfully reconstructs the original raster upon rendering. Furthermore, we introduce Slide2SVG, a novel dataset comprising raster-SVG pairs of slide documents curated from real-world scientific presentations, to facilitate future research in this domain. Our results demonstrate that SliDer achieves a reconstruction LPIPS of 0.069 and is favored by human evaluators in 82.9% of cases compared to the strongest zero-shot VLM baseline.
A Quantum Tensor Network-Based Viewpoint for Modeling and Analysis of Time Series Data
Venue: arXiv cs.LG 2025
Year: 2025

Accurate uncertainty quantification is a critical challenge in machine learning. While neural networks are highly versatile and capable of learning complex patterns, they often lack interpretability due to their ``black box'' nature. On the other hand, probabilistic ``white box'' models, though interpretable, often suffer from a significant performance gap when compared to neural networks. To address this, we propose a novel quantum physics-based ``white box'' method that offers both accurate uncertainty quantification and enhanced interpretability. By mapping the kernel mean embedding (KME) of a time series data vector to a reproducing kernel Hilbert space (RKHS), we construct a tensor network-inspired 1D spin chain Hamiltonian, with the KME as one of its eigen-functions or eigen-modes. We then solve the associated Schr{ö}dinger equation and apply perturbation theory to quantify uncertainty, thereby improving the interpretability of tasks performed with the quantum tensor network-based model. We demonstrate the effectiveness of this methodology, compared to state-of-the-art ``white box" models, in change point detection and time series clustering, providing insights into the uncertainties associated with decision-making throughout the process.
Automated Construction of Medical Indicator Knowledge Graphs Using Retrieval Augmented Large Language Models
Venue: arXiv cs.AI 2025
Year: 2025

Artificial intelligence (AI) is reshaping modern healthcare by advancing disease diagnosis, treatment decision-making, and biomedical research. Among AI technologies, large language models (LLMs) have become especially impactful, enabling deep knowledge extraction and semantic reasoning from complex medical texts. However, effective clinical decision support requires knowledge in structured, interoperable formats. Knowledge graphs serve this role by integrating heterogeneous medical information into semantically consistent networks. Yet, current clinical knowledge graphs still depend heavily on manual curation and rule-based extraction, which is limited by the complexity and contextual ambiguity of medical guidelines and literature. To overcome these challenges, we propose an automated framework that combines retrieval-augmented generation (RAG) with LLMs to construct medical indicator knowledge graphs. The framework incorporates guideline-driven data acquisition, ontology-based schema design, and expert-in-the-loop validation to ensure scalability, accuracy, and clinical reliability. The resulting knowledge graphs can be integrated into intelligent diagnosis and question-answering systems, accelerating the development of AI-driven healthcare solutions.
Fairness-Aware Graph Representation Learning with Limited Demographic Information
Venue: arXiv cs.LG 2025
Year: 2025

Ensuring fairness in Graph Neural Networks is fundamental to promoting trustworthy and socially responsible machine learning systems. In response, numerous fair graph learning methods have been proposed in recent years. However, most of them assume full access to demographic information, a requirement rarely met in practice due to privacy, legal, or regulatory restrictions. To this end, this paper introduces a novel fair graph learning framework that mitigates bias in graph learning under limited demographic information. Specifically, we propose a mechanism guided by partial demographic data to generate proxies for demographic information and design a strategy that enforces consistent node embeddings across demographic groups. In addition, we develop an adaptive confidence strategy that dynamically adjusts each node's contribution to fairness and utility based on prediction confidence. We further provide theoretical analysis demonstrating that our framework, FairGLite, achieves provable upper bounds on group fairness metrics, offering formal guarantees for bias mitigation. Through extensive experiments on multiple datasets and fair graph learning frameworks, we demonstrate the framework's effectiveness in both mitigating bias and maintaining model utility.
New Data Security Requirements and the Proceduralization of Mass Surveillance Law after the European Data Retention Case
Venue: arXiv cs.CY 2025
Year: 2025

This paper discusses the regulation of mass metadata surveillance in Europe through the lens of the landmark judgment in which the Court of Justice of the European Union struck down the Data Retention Directive. The controversial directive obliged telecom and Internet access providers in Europe to retain metadata of all their customers for intelligence and law enforcement purposes, for a period of up to two years. In the ruling, the Court declared the directive in violation of the human rights to privacy and data protection. The Court also confirmed that the mere collection of metadata interferes with the human right to privacy. In addition, the Court developed three new criteria for assessing the level of data security required from a human rights perspective: security measures should take into account the risk of unlawful access to data, and the data's quantity and sensitivity. While organizations that campaigned against the directive have welcomed the ruling, we warn for the risk of proceduralization of mass surveillance law. The Court did not fully condemn mass surveillance that relies on metadata, but left open the possibility of mass surveillance if policymakers lay down sufficient procedural safeguards. Such proceduralization brings systematic risks for human rights. Government agencies, with ample resources, can design complicated systems of procedural oversight for mass surveillance - and claim that mass surveillance is lawful, even if it affects millions of innocent people.
Artificial Intelligence-driven Intelligent Wearable Systems: A full-stack Integration from Material Design to Personalized Interaction
Venue: arXiv cs.AI 2025
Year: 2025

Intelligent wearable systems are at the forefront of precision medicine and play a crucial role in enhancing human-machine interaction. Traditional devices often encounter limitations due to their dependence on empirical material design and basic signal processing techniques. To overcome these issues, we introduce the concept of Human-Symbiotic Health Intelligence (HSHI), which is a framework that integrates multi-modal sensor networks with edge-cloud collaborative computing and a hybrid approach to data and knowledge modeling. HSHI is designed to adapt dynamically to both inter-individual and intra-individual variability, transitioning health management from passive monitoring to an active collaborative evolution. The framework incorporates AI-driven optimization of materials and micro-structures, provides robust interpretation of multi-modal signals, and utilizes a dual mechanism that merges population-level insights with personalized adaptations. Moreover, the integration of closed-loop optimization through reinforcement learning and digital twins facilitates customized interventions and feedback. In general, HSHI represents a significant shift in healthcare, moving towards a model that emphasizes prevention, adaptability, and a harmonious relationship between technology and health management.
Exploring the Effectiveness of Google Play Store's Privacy Transparency Channels
Venue: arXiv cs.CR 2025
Year: 2025

With the requirements and emphases on privacy transparency placed by regulations such as GDPR and CCPA, the Google Play Store requires Android developers to more responsibly communicate their apps' privacy practices to potential users by providing the proper information via the data safety, privacy policy, and permission manifest privacy transparency channels. However, it is unclear how effective those channels are in helping users make informed decisions in the app selection and installation process. In this article, we conducted a study for 190 participants to interact with our simulated privacy transparency channels of mobile apps. We quantitatively analyzed (supplemented by qualitative analysis) participants' responses to five sets of questions. We found that data safety provides the most intuitive user interfaces, privacy policy is most informative and effective, while permission manifest excels at raising participants' concerns about an app's overall privacy risks. These channels complement each other and should all be improved.
BIOMERO 2.0: end-to-end FAIR infrastructure for bioimaging data import, analysis, and provenance
Venue: arXiv cs.SE 2025
Year: 2025

We present BIOMERO 2.0, a major evolution of the BIOMERO framework that transforms OMERO into a FAIR-compliant (findable, accessible, interoperable, and reusable), provenance-aware bioimaging platform. BIOMERO 2.0 integrates data import, preprocessing, analysis, and workflow monitoring through an OMERO.web plugin and containerized components. The importer subsystem facilitates in-place import using containerized preprocessing and metadata enrichment via forms, while the analyzer subsystem coordinates and tracks containerized analyses on high-performance computing systems via the BIOMERO Python library. All imports and analyses are recorded with parameters, versions, and results, ensuring real-time provenance accessible through integrated dashboards. This dual approach places OMERO at the heart of the bioimaging analysis process: the importer ensures provenance from image acquisition through preprocessing and import into OMERO, while the analyzer records it for downstream processing. These integrated layers enhance OMEROs FAIRification, supporting traceable, reusable workflows for image analysis that bridge the gap between data import, analysis, and sharing.
Batch Acquisition Function Evaluations and Decouple Optimizer Updates for Faster Bayesian Optimization
Venue: arXiv cs.LG 2025
Year: 2025

Bayesian optimization (BO) efficiently finds high-performing parameters by maximizing an acquisition function, which models the promise of parameters. A major computational bottleneck arises in acquisition function optimization, where multi-start optimization (MSO) with quasi-Newton (QN) methods is required due to the non-convexity of the acquisition function. BoTorch, a widely used BO library, currently optimizes the summed acquisition function over multiple points, leading to the speedup of MSO owing to PyTorch batching. Nevertheless, this paper empirically demonstrates the suboptimality of this approach in terms of off-diagonal approximation errors in the inverse Hessian of a QN method, slowing down its convergence. To address this problem, we propose to decouple QN updates using a coroutine while batching the acquisition function calls. Our approach not only yields the theoretically identical convergence to the sequential MSO but also drastically reduces the wall-clock time compared to the previous approaches. Our approach is available in GPSampler in Optuna, effectively reducing its computational overhead.
Distribution Matching Distillation Meets Reinforcement Learning
Venue: arXiv cs.CV 2025
Year: 2025

Distribution Matching Distillation (DMD) distills a pre-trained multi-step diffusion model to a few-step one to improve inference efficiency. However, the performance of the latter is often capped by the former. To circumvent this dilemma, we propose DMDR, a novel framework that combines Reinforcement Learning (RL) techniques into the distillation process. We show that for the RL of the few-step generator, the DMD loss itself is a more effective regularization compared to the traditional ones. In turn, RL can help to guide the mode coverage process in DMD more effectively. These allow us to unlock the capacity of the few-step generator by conducting distillation and RL simultaneously. Meanwhile, we design the dynamic distribution guidance and dynamic renoise sampling training strategies to improve the initial distillation process. The experiments demonstrate that DMDR can achieve leading visual quality, prompt coherence among few-step methods, and even exhibit performance that exceeds the multi-step teacher.