OpenRaiser/Intern-Atlas huggingface dataset:
GIQ: Benchmarking 3D Geometric Reasoning of Vision Foundation Models with Simulated and Real Polyhedra
Venue: arXiv cs.CV 2026
Year: 2026

Modern monocular 3D reconstruction methods and vision-language models (VLMs) demonstrate impressive results on standard benchmarks, yet recent works cast doubt on their true understanding of geometric properties. We introduce GOQ, a comprehensive benchmark specifically designed to evaluate the geometric reasoning capabilities of vision and vision-language foundation models. GIQ comprises synthetic and real-world images and corresponding 3D meshes of diverse polyhedra covering varying levels of complexity and symmetry, from Platonic, Archimedean, Johnson, and Catalan solids to stellations and compound shapes. Through systematic experiments involving monocular 3D reconstruction, 3D symmetry detection, mental rotation tests, and zero-shot shape classification tasks, we reveal significant shortcomings in current models. State-of-the-art reconstruction algorithms trained on extensive 3D datasets struggle to reconstruct even basic geometric Platonic solids accurately. Next, although foundation models may be shown via linear and non-linear probing to capture specific 3D symmetry elements, they falter significantly in tasks requiring detailed geometric differentiation, such as mental rotation. Moreover, advanced vision-language assistants such as ChatGPT, Gemini and Claud exhibit remarkably low accuracy in interpreting basic shape properties such as face geometry, convexity, and compound structures of complex polyhedra. GIQ is publicly available at toomanymatts.github.io/giq-benchmark/, providing a structured platform to benchmark critical gaps in geometric intelligence and facilitate future progress in robust, geometry-aware representation learning.
On Reasoning Strength Planning in Large Reasoning Models
Venue: arXiv cs.AI 2026
Year: 2026

Recent studies empirically reveal that large reasoning models (LRMs) can automatically allocate more reasoning strengths (i.e., the number of reasoning tokens) for harder problems, exhibiting difficulty-awareness for better task performance. While this automatic reasoning strength allocation phenomenon has been widely observed, its underlying mechanism remains largely unexplored. To this end, we provide explanations for this phenomenon from the perspective of model activations. We find evidence that LRMs pre-plan the reasoning strengths in their activations even before generation, with this reasoning strength causally controlled by the magnitude of a pre-allocated directional vector. Specifically, we show that the number of reasoning tokens is predictable solely based on the question activations using linear probes, indicating that LRMs estimate the required reasoning strength in advance. We then uncover that LRMs encode this reasoning strength through a pre-allocated directional vector embedded in the activations of the model, where the vector's magnitude modulates the reasoning strength. Subtracting this vector can lead to reduced reasoning token number and performance, while adding this vector can lead to increased reasoning token number and even improved performance. We further reveal that this direction vector consistently yields positive reasoning length prediction, and it modifies the logits of end-of-reasoning token </think> to affect the reasoning length. Finally, we demonstrate two potential applications of our findings: overthinking behavior detection and enabling efficient reasoning on simple problems. Our work provides new insights into the internal mechanisms of reasoning in LRMs and offers practical tools for controlling their reasoning behaviors. Our code is available at https://github.com/AlphaLab-USTC/LRM-plans-CoT.
MLVTG: Mamba-Based Feature Alignment and LLM-Driven Purification for Multi-Modal Video Temporal Grounding
Venue: arXiv cs.CV 2026
Year: 2026

Video Temporal Grounding (VTG), which aims to localize video clips corresponding to natural language queries, is a fundamental yet challenging task in video understanding. Existing Transformer-based methods often suffer from redundant attention and suboptimal multi-modal alignment. To address these limitations, we propose MLVTG, a novel framework that integrates two key modules: MambaAligner and LLMRefiner. MambaAligner uses stacked Vision Mamba blocks as a backbone instead of Transformers to model temporal dependencies and extract robust video representations for multi-modal alignment. LLMRefiner leverages the specific frozen layer of a pre-trained Large Language Model (LLM) to implicitly transfer semantic priors, enhancing multi-modal alignment without fine-tuning. This dual alignment strategy, temporal modeling via structured state-space dynamics and semantic purification via textual priors, enables more precise localization. Extensive experiments on QVHighlights, Charades-STA, and TVSum demonstrate that MLVTG achieves state-of-the-art performance and significantly outperforms existing baselines.
ROS-related Robotic Systems Development with V-model-based Application of MeROS Metamodel
Venue: arXiv cs.RO 2026
Year: 2026

Systems built on the Robot Operating System (ROS) are increasingly easy to assemble, yet hard to govern and reliably coordinate. Beyond the sheer number of subsystems involved, the difficulty stems from their diversity and interaction depth. In this paper, we use a compact heterogeneous robotic system (HeROS), combining mobile and manipulation capabilities, as a demonstration vehicle under dynamically changing tasks. Notably, all its subsystems are powered by ROS. The use of compatible interfaces and other ROS integration capabilities simplifies the construction of such systems. However, this only addresses part of the complexity: the semantic coherence and structural traceability are even more important for precise coordination and call for deliberate engineering methods. The Model-Based Systems Engineering (MBSE) discipline, which emerged from the experience of complexity management in large-scale engineering domains, offers the methodological foundations needed. Despite their strengths in complementary aspects of robotics systems engineering, the lack of a unified approach to integrate ROS and MBSE hinders the full potential of these tools. Motivated by the anticipated impact of such a synergy in robotics practice, we propose a structured methodology based on MeROS - a SysML metamodel created specifically to put the ROS-based systems into the focus of the MBSE workflow. As its methodological backbone, we adapt the well-known V-model to this context, illustrating how complex robotic systems can be designed with traceability and validation capabilities embedded into their lifecycle using practices familiar to engineering teams.
Improved LLM Agents for Financial Document Question Answering
Venue: arXiv cs.CL 2026
Year: 2026

Large language models (LLMs) have shown impressive capabilities on numerous natural language processing tasks. However, LLMs still struggle with numerical question answering for financial documents that include tabular and textual data. Recent works have showed the effectiveness of critic agents (i.e., self-correction) for this task given oracle labels. Building upon this framework, this paper examines the effectiveness of the traditional critic agent when oracle labels are not available, and show, through experiments, that this critic agent's performance deteriorates in this scenario. With this in mind, we present an improved critic agent, along with the calculator agent which outperforms the previous state-of-the-art approach (program-of-thought) and is safer. Furthermore, we investigate how our agents interact with each other, and how this interaction affects their performance.
Intention-Conditioned Flow Occupancy Models
Venue: arXiv cs.LG 2026
Year: 2026

Large-scale pre-training has fundamentally changed how machine learning research is done today: large foundation models are trained once, and then can be used by anyone in the community (including those without data or compute resources to train a model from scratch) to adapt and fine-tune to specific tasks. Applying this same framework to reinforcement learning (RL) is appealing because it offers compelling avenues for addressing core challenges in RL, including sample efficiency and robustness. However, there remains a fundamental challenge to pre-train large models in the context of RL: actions have long-term dependencies, so training a foundation model that reasons across time is important. Recent advances in generative AI have provided new tools for modeling highly complex distributions. In this paper, we build a probabilistic model to predict which states an agent will visit in the temporally distant future (i.e., an occupancy measure) using flow matching. As large datasets are often constructed by many distinct users performing distinct tasks, we include in our model a latent variable capturing the user intention. This intention increases the expressivity of our model, and enables adaptation with generalized policy improvement. We call our proposed method intention-conditioned flow occupancy models (InFOM). Comparing with alternative methods for pre-training, our experiments on $36$ state-based and $4$ image-based benchmark tasks demonstrate that the proposed method achieves $1.8 \times$ median improvement in returns and increases success rates by $36\%$. Website: https://chongyi-zheng.github.io/infom Code: https://github.com/chongyi-zheng/infom
Branched Schrödinger Bridge Matching
Venue: arXiv cs.LG 2026
Year: 2026

Predicting the intermediate trajectories between an initial and target distribution is a central problem in generative modeling. Existing approaches, such as flow matching and Schrödinger bridge matching, effectively learn mappings between two distributions by modeling a single stochastic path. However, these methods are inherently limited to unimodal transitions and cannot capture branched or divergent evolution from a common origin to multiple distinct modes. To address this, we introduce Branched Schrödinger Bridge Matching (BranchSBM), a novel framework that learns branched Schrödinger bridges. BranchSBM parameterizes multiple time-dependent velocity fields and growth processes, enabling the representation of population-level divergence into multiple terminal distributions. We show that BranchSBM is not only more expressive but also essential for tasks involving multi-path surface navigation, modeling cell fate bifurcations from homogeneous progenitor states, and simulating diverging cellular responses to perturbations.
Multi-GPU Acceleration of PALABOS Fluid Solver using C++ Standard Parallelism
Venue: arXiv cs.DC 2026
Year: 2026

This article presents the principles, software architecture, and performance analysis of the GPU port of the lattice Boltzmann software library Palabos (J. Latt et al., "Palabos: Parallel lattice Boltzmann solver", Comput. Math. Appl. 81, 334-350, (2021)). A hybrid CPU-GPU execution model is adopted, in which numerical components are selectively assigned to either the CPU or the GPU, depending on considerations of performance or convenience. This design enables a progressive porting strategy, allowing most features of the original CPU-based codebase to be gradually and seamlessly adapted to GPU execution. The new architecture builds upon two complementary paradigms: a classical object-oriented structure for CPU execution, and a data-oriented counterpart for GPUs, which reproduces the modularity of the original code while eliminating object-oriented overhead detrimental to GPU performance. Central to this approach is the use of modern C++, including standard parallel algorithms and template metaprogramming techniques, which permit the generation of hardware-agnostic computational kernels. This facilitates the development of user-defined, GPU-accelerated components such as collision operators or boundary conditions, while preserving compatibility with the existing codebase and avoiding the need for external libraries or non-standard language extensions. The correctness and performance of the GPU-enabled Palabos are demonstrated through a series of three-dimensional multiphysics benchmarks, including the laminar-turbulent transition in a Taylor-Green vortex, lid-driven cavity flow, and pore-scale flow in Berea sandstone. Despite the high-level abstraction of the implementation, the single-GPU performance is similar to CUDA-native solvers, and multi-GPU tests exhibit good weak and strong scaling across all test cases.
InstructPro: Natural Language Guided Ligand-Binding Protein Design
Venue: arXiv cs.LG 2026
Year: 2026

The de novo design of ligand-binding proteins with tailored functions is essential for advancing biotechnology and molecular medicine, yet existing AI approaches are limited by scarce protein-ligand complex data. To circumvent this data bottleneck, we leverage the abundant natural language descriptions characterizing protein-ligand interactions. Here, we introduce InstructPro, a family of generative models that design proteins following the guidance of natural language instructions and ligand formulas. InstructPro produces protein sequences consistent with specified function descriptions and ligand targets. To enable training and evaluation, we develop InstructProBench, a large-scale dataset of 9.6 million (function description, ligand, protein) triples. We train two model variants -- InstructPro-1B and InstructPro-3B -- that substantially outperform strong baselines. InstructPro-1B achieves an AlphaFold3 ipTM of 0.918 and a binding affinity of -8.764 on seen ligands, while maintaining robust performance in a zero-shot setting with scores of 0.869 and -6.713, respectively. These results are accompanied by novelty scores of 70.1% and 68.8%, underscoring the model's ability to generalize beyond the training set. Furthermore, the model yields a superior binding free energy of -20.9 kcal/mol and an average of 5.82 intermolecular hydrogen bonds, validating its proficiency in designing high-affinity ligand-binding proteins. Notably, scaling to InstructPro-3B further improves the zero-shot ipTM to 0.882, binding affinity to -6.797, and binding free energy to -25.8 kcal/mol, demonstrating clear performance gains associated with increased model capacity. These findings highlight the power of natural language-guided generative models to mitigate the data bottlenecks in traditional structure-based methods, significantly broadening the scope of de novo protein design.
When Is Diversity Rewarded in Cooperative Multi-Agent Learning?
Venue: arXiv cs.MA 2026
Year: 2026

The success of teams in robotics, nature, and society often depends on the division of labor among diverse specialists; however, a principled explanation for when such diversity surpasses a homogeneous team is still missing. Focusing on multi-agent task allocation problems, we study this question from the perspective of reward design: what kinds of objectives are best suited for heterogeneous teams? We first consider an instantaneous, non-spatial setting where the global reward is built by two generalized aggregation operators: an inner operator that maps the $N$ agents' effort allocations on individual tasks to a task score, and an outer operator that merges the $M$ task scores into the global team reward. We prove that the curvature of these operators determines whether heterogeneity can increase reward, and that for broad reward families this collapses to a simple convexity test. Next, we ask what incentivizes heterogeneity to emerge when embodied, time-extended agents must learn an effort allocation policy. To study heterogeneity in such settings, we use multi-agent reinforcement learning (MARL) as our computational paradigm, and introduce Heterogeneity Gain Parameter Search (HetGPS), a gradient-based algorithm that optimizes the parameter space of underspecified MARL environments to find scenarios where heterogeneity is advantageous. Across different environments, we show that HetGPS rediscovers the reward regimes predicted by our theory to maximize the advantage of heterogeneity, both validating HetGPS and connecting our theoretical insights to reward design in MARL. Together, these results help us understand when behavioral diversity delivers a measurable benefit.
Macro Graph of Experts for Billion-Scale Multi-Task Recommendation
Venue: arXiv cs.IR 2026
Year: 2026

Graph-based multi-task learning at billion-scale presents a significant challenge, as different tasks correspond to distinct billion-scale graphs. Traditional multi-task learning methods often neglect these graph structures, relying solely on individual user and item embeddings. However, disregarding graph structures overlooks substantial potential for improving performance. In this paper, we introduce the Macro Graph of Experts (MGOE) framework, the first approach capable of leveraging macro graph embeddings to capture task-specific macro features while modeling the correlations between task-specific experts. Specifically, we propose the concept of a Macro Graph Bottom, which, for the first time, enables multi-task learning models to incorporate graph information effectively. We design the Macro Prediction Tower to dynamically integrate macro knowledge across tasks. MGOE has been deployed at scale, powering multi-task learning for a leading billion-scale recommender system, Alibaba. Extensive offline experiments conducted on three public benchmark datasets demonstrate its superiority over state-of-the-art multi-task learning methods, establishing MGOE as a breakthrough in multi-task graph-based recommendation. Furthermore, online A/B tests confirm the superiority of MGOE in billion-scale recommender systems.
Mind the Gap: Benchmarking LLM Uncertainty and Calibration with Specialty-Aware Clinical QA and Reasoning-Based Behavioural Features
Venue: arXiv cs.CL 2026
Year: 2026

Reliable uncertainty quantification (UQ) is essential when employing large language models (LLMs) in high-risk domains such as clinical question answering (QA). In this work, we evaluate uncertainty estimation methods for clinical QA focusing, for the first time, on eleven clinical specialties and six question types, and across ten open-source LLMs (general-purpose, biomedical, and reasoning models), alongside representative proprietary models. We analyze score-based UQ methods, present a case study introducing a novel lightweight method based on behavioral features derived from reasoning-oriented models, and examine conformal prediction as a complementary set-based approach. Our findings reveal that uncertainty reliability is not a monolithic property, but one that depends on clinical specialty and question type due to shifts in calibration and discrimination. Our results highlight the need to select or ensemble models based on their distinct, complementary strengths and clinical use.
Breaking Bad Molecules: Are MLLMs Ready for Structure-Level Molecular Detoxification?
Venue: arXiv cs.AI 2026
Year: 2026

Toxicity remains a leading cause of early-stage drug development failure. Despite advances in molecular design and property prediction, the task of molecular toxicity repair, generating structurally valid molecular alternatives with reduced toxicity, has not yet been systematically defined or benchmarked. To fill this gap, we introduce ToxiMol, the first benchmark task for general-purpose Multimodal Large Language Models (MLLMs) focused on molecular toxicity repair. We construct a standardized dataset covering 11 primary tasks and 660 representative toxic molecules spanning diverse mechanisms and granularities. We design a prompt annotation pipeline with mechanism-aware and task-adaptive capabilities, informed by expert toxicological knowledge. In parallel, we propose an automated evaluation framework, ToxiEval, which integrates toxicity endpoint prediction, synthetic accessibility, drug-likeness, and structural similarity into a high-throughput evaluation chain for repair success. We systematically assess 43 mainstream general-purpose MLLMs and conduct multiple ablation studies to analyze key issues, including evaluation metrics, candidate diversity, and failure attribution. Experimental results show that although current MLLMs still face significant challenges on this task, they begin to demonstrate promising capabilities in toxicity understanding, semantic constraint adherence, and structure-aware editing.
Sequential-Parallel Duality in Prefix Scannable Models
Venue: arXiv cs.LG 2026
Year: 2026

Modern neural sequence models are designed to meet the dual mandate of parallelizable training and fast sequential inference. Recent developments have given rise to various models, such as Gated Linear Attention (GLA) and Mamba, that achieve such ``sequential-parallel duality.'' This raises a natural question: can we characterize the full class of neural sequence models that support near-constant-time parallel evaluation and linear-time, constant-space sequential inference? We begin by describing a broad class of such models -- state space models -- as those whose state updates can be computed using the classic parallel prefix scan algorithm with a custom associative aggregation operator. We then define a more general class, Prefix-Scannable Models (PSMs), by relaxing the state aggregation operator to allow arbitrary (potentially non-associative) functions such as softmax attention. This generalization unifies many existing architectures, including element-wise RNNs (e.g., Mamba) and linear transformers (e.g., GLA, Mamba2, mLSTM), while also introducing new models with softmax-like operators that achieve O(1) amortized compute per token and log(N) memory for sequence length N. We empirically evaluate such models on illustrative small-scale language modeling and canonical synthetic tasks, including state tracking and associative recall. Empirically, we find that PSMs retain the expressivity of transformer-based architectures while matching the inference efficiency of state space models -- in some cases exhibiting better length generalization than either.
EmbedAgent: Benchmarking Large Language Models in Embedded System Development
Venue: arXiv cs.SE 2026
Year: 2026

Large Language Models (LLMs) have shown promise in various tasks, yet few benchmarks assess their capabilities in embedded system development. In this paper, we introduce EmbedAgent, a paradigm designed to simulate real-world roles in embedded system development, such as Embedded System Programmer, Architect, and Integrator. This paradigm enables LLMs to be tested in tasks that bridge the gap between digital and physical systems, allowing for a more comprehensive assessment of their capabilities. To evaluate LLMs on these tasks, we propose Embedbench, the first comprehensive benchmark for embedded system programming, circuit design, and cross-platform migration. Embedbench consists of 126 cases, covering 9 electronic components across 3 hardware platforms. Through extensive experiments on 10 mainstream LLMs, we uncover several key findings. Surprisingly, despite the simplicity of the cases, DeepSeek-R1 achieves only a 55.6% pass@1 rate when provided with schematic information, and 50.0% when tasked with generating the schematics itself. In the cross-platform migration tasks, LLMs show relatively strong performance with MicroPython on the Raspberry Pi Pico (with the top model achieving 73.8% pass@1), but perform poorly on ESP-IDF, where the best model reaches only 29.4% pass@1. Interestingly, we observe that general-purpose chat LLMs like DeepSeek-V3 often fail to utilize relevant pre-trained knowledge in this domain, while reasoning LLMs tend to overthink and overlook efficient knowledge during pretraining. Based on these insights, we propose two strategies: retrieval augmented generation and compiler feedback-to enhance LLM performance. These strategies result in significant improvements, with Deepseek-R1 reaching a 65.1% pass@1 with correct schematics, and 53.1% without. Additionally, the accuracy of the Arduino to ESP32 migration task improves from 21.4% to 27.8%.