OpenRaiser/Intern-Atlas huggingface dataset:
Marker Track: Accurate Fiducial Marker Tracking for Evaluation of Residual Motions During Breath-Hold Radiotherapy
Venue: arXiv cs.CV 2025
Year: 2025

Fiducial marker positions in projection image of cone-beam computed tomography (CBCT) scans have been studied to evaluate daily residual motion during breath-hold radiation therapy. Fiducial marker migration posed challenges in accurately locating markers, prompting the development of a novel algorithm that reconstructs volumetric probability maps of marker locations from filtered gradient maps of projections. This guides the development of a Python-based algorithm to detect fiducial markers in projection images using Meta AI's Segment Anything Model 2 (SAM 2). Retrospective data from a pancreatic cancer patient with two fiducial markers were analyzed. The three-dimensional (3D) marker positions from simulation computed tomography (CT) were compared to those reconstructed from CBCT images, revealing a decrease in relative distances between markers over time. Fiducial markers were successfully detected in 2777 out of 2786 projection frames. The average standard deviation of superior-inferior (SI) marker positions was 0.56 mm per breath-hold, with differences in average SI positions between two breath-holds in the same scan reaching up to 5.2 mm, and a gap of up to 7.3 mm between the end of the first and beginning of the second breath-hold. 3D marker positions were calculated using projection positions and confirmed marker migration. This method effectively calculates marker probability volume and enables accurate fiducial marker tracking during treatment without requiring any specialized equipment, additional radiation doses, or manual initialization and labeling. It has significant potential for automatically assessing daily residual motion to adjust planning margins, functioning as an adaptive radiation therapy tool.
Gensors: Authoring Personalized Visual Sensors with Multimodal Foundation Models and Reasoning
Venue: arXiv cs.HC 2025
Year: 2025

Multimodal large language models (MLLMs), with their expansive world knowledge and reasoning capabilities, present a unique opportunity for end-users to create personalized AI sensors capable of reasoning about complex situations. A user could describe a desired sensing task in natural language (e.g., "alert if my toddler is getting into mischief"), with the MLLM analyzing the camera feed and responding within seconds. In a formative study, we found that users saw substantial value in defining their own sensors, yet struggled to articulate their unique personal requirements and debug the sensors through prompting alone. To address these challenges, we developed Gensors, a system that empowers users to define customized sensors supported by the reasoning capabilities of MLLMs. Gensors 1) assists users in eliciting requirements through both automatically-generated and manually created sensor criteria, 2) facilitates debugging by allowing users to isolate and test individual criteria in parallel, 3) suggests additional criteria based on user-provided images, and 4) proposes test cases to help users "stress test" sensors on potentially unforeseen scenarios. In a user study, participants reported significantly greater sense of control, understanding, and ease of communication when defining sensors using Gensors. Beyond addressing model limitations, Gensors supported users in debugging, eliciting requirements, and expressing unique personal requirements to the sensor through criteria-based reasoning; it also helped uncover users' "blind spots" by exposing overlooked criteria and revealing unanticipated failure modes. Finally, we discuss how unique characteristics of MLLMs--such as hallucinations and inconsistent responses--can impact the sensor-creation process. These findings contribute to the design of future intelligent sensing systems that are intuitive and customizable by everyday users.
Renewable Energy Prediction: A Comparative Study of Deep Learning Models for Complex Dataset Analysis
Venue: arXiv cs.LG 2025
Year: 2025

The increasing focus on predicting renewable energy production aligns with advancements in deep learning (DL). The inherent variability of renewable sources and the complexity of prediction methods require robust approaches, such as DL models, in the renewable energy sector. DL models are preferred over traditional machine learning (ML) because they capture complex, nonlinear relationships in renewable energy datasets. This study examines key factors influencing DL technique accuracy, including sampling and hyperparameter optimization, by comparing various methods and training and test ratios within a DL framework. Seven machine learning methods, LSTM, Stacked LSTM, CNN, CNN-LSTM, DNN, Time-Distributed MLP (TD-MLP), and Autoencoder (AE), are evaluated using a dataset combining weather and photovoltaic power output data from 12 locations. Regularization techniques such as early stopping, neuron dropout, L1 and L2 regularization are applied to address overfitting. The results demonstrate that the combination of early stopping, dropout, and L1 regularization provides the best performance to reduce overfitting in the CNN and TD-MLP models with larger training set, while the combination of early stopping, dropout, and L2 regularization is the most effective to reduce the overfitting in CNN-LSTM and AE models with smaller training set.
MM-Retinal V2: Transfer an Elite Knowledge Spark into Fundus Vision-Language Pretraining
Venue: arXiv cs.CV 2025
Year: 2025

Vision-language pretraining (VLP) has been investigated to generalize across diverse downstream tasks for fundus image analysis. Although recent methods showcase promising achievements, they significantly rely on large-scale private image-text data but pay less attention to the pretraining manner, which limits their further advancements. In this work, we introduce MM-Retinal V2, a high-quality image-text paired dataset comprising CFP, FFA, and OCT image modalities. Then, we propose a novel fundus vision-language pretraining model, namely KeepFIT V2, which is pretrained by integrating knowledge from the elite data spark into categorical public datasets. Specifically, a preliminary textual pretraining is adopted to equip the text encoder with primarily ophthalmic textual knowledge. Moreover, a hybrid image-text knowledge injection module is designed for knowledge transfer, which is essentially based on a combination of global semantic concepts from contrastive learning and local appearance details from generative learning. Extensive experiments across zero-shot, few-shot, and linear probing settings highlight the generalization and transferability of KeepFIT V2, delivering performance competitive to state-of-the-art fundus VLP models trained on large-scale private image-text datasets. Our dataset and model are publicly available via https://github.com/lxirich/MM-Retinal.
MADP: Multi-Agent Deductive Planning for Enhanced Cognitive-Behavioral Mental Health Question Answer
Venue: arXiv cs.CL 2025
Year: 2025

The Mental Health Question Answer (MHQA) task requires the seeker and supporter to complete the support process in one-turn dialogue. Given the richness of help-seeker posts, supporters must thoroughly understand the content and provide logical, comprehensive, and well-structured responses. Previous works in MHQA mostly focus on single-agent approaches based on the cognitive element of Cognitive Behavioral Therapy (CBT), but they overlook the interactions among various CBT elements, such as emotion and cognition. This limitation hinders the models' ability to thoroughly understand the distress of help-seekers. To address this, we propose a framework named Multi-Agent Deductive Planning (MADP), which is based on the interactions between the various psychological elements of CBT. This method guides Large Language Models (LLMs) to achieve a deeper understanding of the seeker's context and provide more personalized assistance based on individual circumstances. Furthermore, we construct a new dataset based on the MADP framework and use it to fine-tune LLMs, resulting in a specialized model named MADP-LLM. We conduct extensive experiments, including comparisons with multiple LLMs, human evaluations, and automatic evaluations, to validate the effectiveness of the MADP framework and MADP-LLM.
Aging-aware CPU Core Management for Embodied Carbon Amortization in Cloud LLM Inference
Venue: arXiv cs.DC 2025
Year: 2025

Broad adoption of Large Language Models (LLM) demands rapid expansions of cloud LLM inference clusters, leading to accumulation of embodied carbon$-$the emissions from manufacturing and supplying IT assets$-$that mostly concentrate on inference server CPU. This paper delves into the challenges of sustainable growth of cloud LLM inference, emphasizing extended amortization of CPU embodied over an increased lifespan. Given the reliability risks of silicon aging, we propose an aging-aware CPU core management technique to delay CPU aging effects, allowing the cluster operator to safely increase CPU life. Our technique exploits CPU underutilization patterns that we uncover in cloud LLM inference by halting aging in unused cores and even-outing aging in active cores via selective deep idling and aging-aware inference task allocation. Through extensive simulations using real-world Azure inference traces and an extended LLM cluster simulator from Microsoft, we show superior performance of our technique over existing methods with an estimated 37.67\% reduction in yearly embodied carbon emissions through p99 performance of managing CPU aging effects, a 77\% reduction in CPU underutilization, and less than 10\% impact to the inference service quality.
LLM-attacker: Enhancing Closed-loop Adversarial Scenario Generation for Autonomous Driving with Large Language Models
Venue: arXiv cs.LG 2025
Year: 2025

Ensuring and improving the safety of autonomous driving systems (ADS) is crucial for the deployment of highly automated vehicles, especially in safety-critical events. To address the rarity issue, adversarial scenario generation methods are developed, in which behaviors of traffic participants are manipulated to induce safety-critical events. However, existing methods still face two limitations. First, identification of the adversarial participant directly impacts the effectiveness of the generation. However, the complexity of real-world scenarios, with numerous participants and diverse behaviors, makes identification challenging. Second, the potential of generated safety-critical scenarios to continuously improve ADS performance remains underexplored. To address these issues, we propose LLM-attacker: a closed-loop adversarial scenario generation framework leveraging large language models (LLMs). Specifically, multiple LLM agents are designed and coordinated to identify optimal attackers. Then, the trajectories of the attackers are optimized to generate adversarial scenarios. These scenarios are iteratively refined based on the performance of ADS, forming a feedback loop to improve ADS. Experimental results show that LLM-attacker can create more dangerous scenarios than other methods, and the ADS trained with it achieves a collision rate half that of training with normal scenarios. This indicates the ability of LLM-attacker to test and enhance the safety and robustness of ADS. Video demonstrations are provided at: https://drive.google.com/file/d/1Zv4V3iG7825oyiKbUwS2Y-rR0DQIE1ZA/view.
Coding for Strand Breaks in Composite DNA
Venue: arXiv cs.IT 2025
Year: 2025

Due to their sequential nature, traditional DNA synthesis methods are expensive in terms of time and resources. They also fabricate multiple copies of the same strand, introducing redundancy. This redundancy can be leveraged to enhance the information capacity of each synthesis cycle and DNA storage systems in general by employing composite DNA symbols. Unlike conventional DNA storage, composite DNA encodes information in the distribution of bases across a pool of strands rather than in the individual strands themselves. Consequently, error models for DNA storage must be adapted to account for this unique characteristic. One significant error model for long-term DNA storage is strand breaks, often caused by the decay of individual bases. This work extends the strand-break channel model to the composite DNA setting. To address this challenge, we propose a coding scheme that uses marker codes to correct single strand breaks. As part of this approach, we generalise run-length-limited (RLL) codes for the composite setting and derive bounds on their redundancy.
Optimizing Deep Learning Models to Address Class Imbalance in Code Comment Classification
Venue: arXiv cs.SE 2025
Year: 2025

Developers rely on code comments to document their work, track issues, and understand the source code. As such, comments provide valuable insights into developers' understanding of their code and describe their various intentions in writing the surrounding code. Recent research leverages natural language processing and deep learning to classify comments based on developers' intentions. However, such labelled data are often imbalanced, causing learning models to perform poorly. This work investigates the use of different weighting strategies of the loss function to mitigate the scarcity of certain classes in the dataset. In particular, various RoBERTa-based transformer models are fine-tuned by means of a hyperparameter search to identify their optimal parameter configurations. Additionally, we fine-tuned the transformers with different weighting strategies for the loss function to address class imbalances. Our approach outperforms the STACC baseline by 8.9 per cent on the NLBSE'25 Tool Competition dataset in terms of the average F1$_c$ score, and exceeding the baseline approach in 17 out of 19 cases with a gain ranging from -5.0 to 38.2. The source code is publicly available at https://github.com/moritzmock/NLBSE2025.
Explaining Facial Expression Recognition
Venue: arXiv cs.HC 2025
Year: 2025

Facial expression recognition (FER) has emerged as a promising approach to the development of emotion-aware intelligent agents and systems. However, key challenges remain in utilizing FER in real-world contexts, including ensuring user understanding and establishing a suitable level of user trust. We developed a novel explanation method utilizing Facial Action Units (FAUs) to explain the output of a FER model through both textual and visual modalities. We conducted an empirical user study evaluating user understanding and trust, comparing our approach to state-of-the-art eXplainable AI (XAI) methods. Our results indicate that visual AND textual as well as textual-only FAU-based explanations resulted in better user understanding of the FER model. We also show that all modalities of FAU-based methods improved appropriate trust of the users towards the FER model.
A Low-Cost, High-Precision Human-Machine Interaction Solution Based on Multi-Coil Wireless Charging Pads
Venue: arXiv cs.HC 2025
Year: 2025

Wireless charging pads are common, yet their functionality is mainly restricted to charging. Existing gesture recognition techniques, such as those based on machine vision and WiFi, have drawbacks like high costs and poor precision. This paper presents a new human machine interaction solution using multicoil wireless charging pads. The proposed approach leverages the pads existing modules without additional wearable sensors. It determines gestures by monitoring current and power changes in different coils. The data processing includes noise removal, sorting, highpass filtering, and slicing. A Bayesian network and particle filtering are employed for motion tracking. Through experiments, this solution proves to have wide applications, high recognition accuracy, and low cost. It can effectively identify diverse gestures, increasing the value of wireless charging pads. It outperforms traditional methods, with a 0.73 improvement in recognition accuracy and better environmental adaptability.
Robust Mobile Robot Path Planning via LLM-Based Dynamic Waypoint Generation
Venue: arXiv cs.RO 2025
Year: 2025

Mobile robot path planning in complex environments remains a significant challenge, especially in achieving efficient, safe and robust paths. The traditional path planning techniques like DRL models typically trained for a given configuration of the starting point and target positions, these models only perform well when these conditions are satisfied. In this paper, we proposed a novel path planning framework that embeds Large Language Models to empower mobile robots with the capability of dynamically interpreting natural language commands and autonomously generating efficient, collision-free navigation paths. The proposed framework uses LLMs to translate high-level user inputs into actionable waypoints while dynamically adjusting paths in response to obstacles. We experimentally evaluated our proposed LLM-based approach across three different environments of progressive complexity, showing the robustness of our approach with llama3.1 model that outperformed other LLM models in path planning time, waypoint generation success rate, and collision avoidance. This underlines the promising contribution of LLMs for enhancing the capability of mobile robots, especially when their operation involves complex decisions in large and complex environments. Our framework has provided safer, more reliable navigation systems and opened a new direction for the future research. The source code of this work is publicly available on GitHub.
Evidential Physics-Informed Neural Networks
Venue: arXiv cs.LG 2025
Year: 2025

We present a novel class of Physics-Informed Neural Networks that is formulated based on the principles of Evidential Deep Learning, where the model incorporates uncertainty quantification by learning parameters of a higher-order distribution. The dependent and trainable variables of the PDE residual loss and data-fitting loss terms are recast as functions of the hyperparameters of an evidential prior distribution. Our model is equipped with an information-theoretic regularizer that contains the Kullback-Leibler divergence between two inverse-gamma distributions characterizing predictive uncertainty. Relative to Bayesian-Physics-Informed-Neural-Networks, our framework appeared to exhibit higher sensitivity to data noise, preserve boundary conditions more faithfully and yield empirical coverage probabilities closer to nominal ones. Toward examining its relevance for data mining in scientific discoveries, we demonstrate how to apply our model to inverse problems involving 1D and 2D nonlinear differential equations.
A Tutorial on Stream-based Monitoring
Venue: arXiv cs.LO 2025
Year: 2025

Stream-based runtime monitoring frameworks are safety assurance tools that check the runtime behavior of a system against a formal specification. This tutorial provides a hands-on introduction to RTLola, a real-time monitoring toolkit for cyber-physical systems and networks. RTLola processes, evaluates, and aggregates streams of input data, such as sensor readings, and provides a real-time analysis in the form of comprehensive statistics and logical assessments of the system's health. RTLola has been applied successfully in monitoring autonomous systems such as unmanned aircraft. The tutorial guides the reader through the development of a stream-based specification for an autonomous drone observing other flying objects in its flight path. Each tutorial section provides an intuitive introduction, highlighting useful language features and specification patterns, and gives a more in-depth explanation of technical details for the advanced reader. Finally, we discuss how runtime monitors generated from RTLola specifications can be integrated into a variety of systems and discuss different monitoring applications.
Does Functional Package Management Enable Reproducible Builds at Scale? Yes
Venue: arXiv cs.SE 2025
Year: 2025

Reproducible Builds (R-B) guarantee that rebuilding a software package from source leads to bitwise identical artifacts. R-B is a promising approach to increase the integrity of the software supply chain, when installing open source software built by third parties. Unfortunately, despite success stories like high build reproducibility levels in Debian packages, uncertainty remains among field experts on the scalability of R-B to very large package repositories. In this work, we perform the first large-scale study of bitwise reproducibility, in the context of the Nix functional package manager, rebuilding 709 816 packages from historical snapshots of the nixpkgs repository, the largest cross-ecosystem open source software distribution, sampled in the period 2017-2023. We obtain very high bitwise reproducibility rates, between 69 and 91% with an upward trend, and even higher rebuildability rates, over 99%. We investigate unreproducibility causes, showing that about 15% of failures are due to embedded build dates. We release a novel dataset with all build statuses, logs, as well as full ''diffoscopes'': recursive diffs of where unreproducible build artifacts differ.
Enhancing the Convergence of Federated Learning Aggregation Strategies with Limited Data
Venue: arXiv cs.LG 2025
Year: 2025

The development of deep learning techniques is a leading field applied to cases in which medical data is used, particularly in cases of image diagnosis. This type of data has privacy and legal restrictions that in many cases prevent it from being processed from central servers. However, in this area collaboration between different research centers, in order to create models as robust as possible, trained with the largest quantity and diversity of data available, is a critical point to be taken into account. In this sense, the application of privacy aware distributed architectures, such as federated learning arises. When applying this type of architecture, the server aggregates the different local models trained with the data of each data owner to build a global model. This point is critical and therefore it is fundamental to analyze different ways of aggregation according to the use case, taking into account the distribution of the clients, the characteristics of the model, etc. In this paper we propose a novel aggregation strategy and we apply it to a use case of cerebral magnetic resonance image classification. In this use case the aggregation function proposed manages to improve the convergence obtained over the rounds of the federated learning process in relation to different aggregation strategies classically implemented and applied.