OpenRaiser/Intern-Atlas huggingface dataset:
Count The Notes: Histogram-Based Supervision for Automatic Music Transcription
Venue: arXiv cs.SD 2025
Year: 2025

Automatic Music Transcription (AMT) converts audio recordings into symbolic musical representations. Training deep neural networks (DNNs) for AMT typically requires strongly aligned training pairs with precise frame-level annotations. Since creating such datasets is costly and impractical for many musical contexts, weakly aligned approaches using segment-level annotations have gained traction. However, existing methods often rely on Dynamic Time Warping (DTW) or soft alignment loss functions, both of which still require local semantic correspondences, making them error-prone and computationally expensive. In this article, we introduce CountEM, a novel AMT framework that eliminates the need for explicit local alignment by leveraging note event histograms as supervision, enabling lighter computations and greater flexibility. Using an Expectation-Maximization (EM) approach, CountEM iteratively refines predictions based solely on note occurrence counts, significantly reducing annotation efforts while maintaining high transcription accuracy. Experiments on piano, guitar, and multi-instrument datasets demonstrate that CountEM matches or surpasses existing weakly supervised methods, improving AMT's robustness, scalability, and efficiency. Our project page is available at https://yoni-yaffe.github.io/count-the-notes.
Entropy-Guided Reasoning Compression
Venue: arXiv cs.CL 2025
Year: 2025

Large reasoning models have demonstrated remarkable performance on complex reasoning tasks, yet the excessive length of their chain-of-thought outputs remains a major practical bottleneck due to high computation cost and poor deployability. Existing compression methods have achieved partial success but overlook a crucial phenomenon in the training process -- the entropy conflict. During compression training, entropy decreases, leading to shorter reasoning but limited exploration, while accuracy-oriented objectives increase entropy, lengthening reasoning chains. This can cause the model to get stuck in a local dilemma. Our analysis further reveals the origin of the entropy conflict: many high-entropy tokens are logical connectors that receive larger gradients and are encouraged under the performance objective, while the compression objective simultaneously penalizes these potentially redundant connectors. This opposing pressure creates a direct source of entropy conflict. To address these issues, we adopt an entropy-guided training framework. As entropy descends, the model is guided toward efficient reasoning by encouraging concise thought steps; as entropy rises, exploration is reinforced under the compact reasoning mode to improve robustness. Experiments on six mathematical benchmarks show that our method compresses reasoning length to 20% of the original while maintaining or even surpassing baseline accuracy. Code and models will be released publicly.
NeuralSSD: A Neural Solver for Signed Distance Surface Reconstruction
Venue: arXiv cs.CV 2025
Year: 2025

We proposed a generalized method, NeuralSSD, for reconstructing a 3D implicit surface from the widely-available point cloud data. NeuralSSD is a solver-based on the neural Galerkin method, aimed at reconstructing higher-quality and accurate surfaces from input point clouds. Implicit method is preferred due to its ability to accurately represent shapes and its robustness in handling topological changes. However, existing parameterizations of implicit fields lack explicit mechanisms to ensure a tight fit between the surface and input data. To address this, we propose a novel energy equation that balances the reliability of point cloud information. Additionally, we introduce a new convolutional network that learns three-dimensional information to achieve superior optimization results. This approach ensures that the reconstructed surface closely adheres to the raw input points and infers valuable inductive biases from point clouds, resulting in a highly accurate and stable surface reconstruction. NeuralSSD is evaluated on a variety of challenging datasets, including the ShapeNet and Matterport datasets, and achieves state-of-the-art results in terms of both surface reconstruction accuracy and generalizability.
DNA Storage in the Short Molecule Regime
Venue: arXiv cs.IT 2025
Year: 2025

We study the amount of reliable information that can be stored in a DNA-based storage system composed of short DNA molecules. In this regime, Shomorony and Heckel (2022) put forward a conjecture on the scaling of the number of information bits that can be reliably stored. In this paper, we complete the proof of this conjecture. We analyze a random-coding scheme in which each codeword is obtained by quantizing a randomly generated probability mass function drawn from the probability simplex. By analyzing the optimal maximum-likelihood decoder, we derive an achievability bound that matches a recently established converse bound across the entire short-molecule regime. We also propose a second coding scheme, which operates with significantly lower computational complexity but achieves the optimal scaling, except for a specific range of very short molecules.
DataSage: Multi-agent Collaboration for Insight Discovery with External Knowledge Retrieval, Multi-role Debating, and Multi-path Reasoning
Venue: arXiv cs.AI 2025
Year: 2025

In today's data-driven era, fully automated end-to-end data analytics, particularly insight discovery, is critical for discovering actionable insights that assist organizations in making effective decisions. With the rapid advancement of large language models (LLMs), LLM-driven agents have emerged as a promising paradigm for automating data analysis and insight discovery. However, existing data insight agents remain limited in several key aspects, often failing to deliver satisfactory results due to: (1) insufficient utilization of domain knowledge, (2) shallow analytical depth, and (3) error-prone code generation during insight generation. To address these issues, we propose DataSage, a novel multi-agent framework that incorporates three innovative features including external knowledge retrieval to enrich the analytical context, a multi-role debating mechanism to simulate diverse analytical perspectives and deepen analytical depth, and multi-path reasoning to improve the accuracy of the generated code and insights. Extensive experiments on InsightBench demonstrate that DataSage consistently outperforms existing data insight agents across all difficulty levels, offering an effective solution for automated data insight discovery.
Audio Question Answering with GRPO-Based Fine-Tuning and Calibrated Segment-Level Predictions
Venue: arXiv cs.SD 2025
Year: 2025

In this report, we describe our submission to Track 5 of the DCASE 2025 Challenge for the task of Audio Question Answering(AQA). Our system leverages the SSL backbone BEATs to extract frame-level audio features, which are then processed by a classification head to generate segment-level predictions of acoustic events, following the Audioset ontology. These segment-level predictions are subsequently calibrated before producing event-level predictions. Finally, these predictions are incorporated into a structured prompt, along with the question and candidate answers. This prompt is then fed to a fine-tuned version of Qwen2.5-7B-Instruct, trained using the GRPO algorithm with a simple reward function. Our method achieves an accuracy of 62.6 % on the development set, demonstrating the effectiveness of combining acoustic event reasoning with instruction-tuned large language models for AQA.
Iterative Diffusion-Refined Neural Attenuation Fields for Multi-Source Stationary CT Reconstruction: NAF Meets Diffusion Model
Venue: arXiv cs.CV 2025
Year: 2025

Multi-source stationary computed tomography (CT) has recently attracted attention for its ability to achieve rapid image reconstruction, making it suitable for time-sensitive clinical and industrial applications. However, practical systems are often constrained by ultra-sparse-view sampling, which significantly degrades reconstruction quality. Traditional methods struggle under ultra-sparse-view settings, where interpolation becomes inaccurate and the resulting reconstructions are unsatisfactory. To address this challenge, this study proposes Diffusion-Refined Neural Attenuation Fields (Diff-NAF), an iterative framework tailored for multi-source stationary CT under ultra-sparse-view conditions. Diff-NAF combines a Neural Attenuation Field representation with a dual-branch conditional diffusion model. The process begins by training an initial NAF using ultra-sparse-view projections. New projections are then generated through an Angle-Prior Guided Projection Synthesis strategy that exploits inter view priors, and are subsequently refined by a Diffusion-driven Reuse Projection Refinement Module. The refined projections are incorporated as pseudo-labels into the training set for the next iteration. Through iterative refinement, Diff-NAF progressively enhances projection completeness and reconstruction fidelity under ultra-sparse-view conditions, ultimately yielding high-quality CT reconstructions. Experimental results on multiple simulated 3D CT volumes and real projection data demonstrate that Diff-NAF achieves the best performance under ultra-sparse-view conditions.
LSP-YOLO: A Lightweight Single-Stage Network for Sitting Posture Recognition on Embedded Devices
Venue: arXiv cs.CV 2025
Year: 2025

With the rise in sedentary behavior, health problems caused by poor sitting posture have drawn increasing attention. Most existing methods, whether using invasive sensors or computer vision, rely on two-stage pipelines, which result in high intrusiveness, intensive computation, and poor real-time performance on embedded edge devices. Inspired by YOLOv11-Pose, a lightweight single-stage network for sitting posture recognition on embedded edge devices termed LSP-YOLO was proposed. By integrating partial convolution(PConv) and Similarity-Aware Activation Module(SimAM), a lightweight module, Light-C3k2, was designed to reduce computational cost while maintaining feature extraction capability. In the recognition head, keypoints were directly mapped to posture classes through pointwise convolution, and intermediate supervision was employed to enable efficient fusion of pose estimation and classification. Furthermore, a dataset containing 5,000 images across six posture categories was constructed for model training and testing. The smallest trained model, LSP-YOLO-n, achieved 94.2% accuracy and 251 Fps on personal computer(PC) with a model size of only 1.9 MB. Meanwhile, real-time and high-accuracy inference under constrained computational resources was demonstrated on the SV830C + GC030A platform. The proposed approach is characterized by high efficiency, lightweight design and deployability, making it suitable for smart classrooms, rehabilitation, and human-computer interaction applications.
ConInstruct: Evaluating Large Language Models on Conflict Detection and Resolution in Instructions
Venue: arXiv cs.CL 2025
Year: 2025

Instruction-following is a critical capability of Large Language Models (LLMs). While existing works primarily focus on assessing how well LLMs adhere to user instructions, they often overlook scenarios where instructions contain conflicting constraints-a common occurrence in complex prompts. The behavior of LLMs under such conditions remains under-explored. To bridge this gap, we introduce ConInstruct, a benchmark specifically designed to assess LLMs' ability to detect and resolve conflicts within user instructions. Using this dataset, we evaluate LLMs' conflict detection performance and analyze their conflict resolution behavior. Our experiments reveal two key findings: (1) Most proprietary LLMs exhibit strong conflict detection capabilities, whereas among open-source models, only DeepSeek-R1 demonstrates similarly strong performance. DeepSeek-R1 and Claude-4.5-Sonnet achieve the highest average F1-scores at 91.5% and 87.3%, respectively, ranking first and second overall. (2) Despite their strong conflict detection abilities, LLMs rarely explicitly notify users about the conflicts or request clarification when faced with conflicting constraints. These results underscore a critical shortcoming in current LLMs and highlight an important area for future improvement when designing instruction-following LLMs.
SciRAG: Adaptive, Citation-Aware, and Outline-Guided Retrieval and Synthesis for Scientific Literature
Venue: arXiv cs.DL 2025
Year: 2025

The accelerating growth of scientific publications has intensified the need for scalable, trustworthy systems to synthesize knowledge across diverse literature. While recent retrieval-augmented generation (RAG) methods have improved access to scientific information, they often overlook citation graph structure, adapt poorly to complex queries, and yield fragmented, hard-to-verify syntheses. We introduce SciRAG, an open-source framework for scientific literature exploration that addresses these gaps through three key innovations: (1) adaptive retrieval that flexibly alternates between sequential and parallel evidence gathering; (2) citation-aware symbolic reasoning that leverages citation graphs to organize and filter supporting documents; and (3) outline-guided synthesis that plans, critiques, and refines answers to ensure coherence and transparent attribution. Extensive experiments across multiple benchmarks such as QASA and ScholarQA demonstrate that SciRAG outperforms prior systems in factual accuracy and synthesis quality, establishing a new foundation for reliable, large-scale scientific knowledge aggregation.
The Tokenization Bottleneck: How Vocabulary Extension Improves Chemistry Representation Learning in Pretrained Language Models
Venue: arXiv cs.CL 2025
Year: 2025

The application of large language models (LLMs) to chemistry is frequently hampered by a "tokenization bottleneck", where tokenizers tuned on general-domain text tend to fragment chemical representations such as SMILES into semantically uninformative sub-tokens. This paper introduces a principled methodology to resolve this bottleneck by unifying the representation of natural language and molecular structures within a single model. Our approach involves targeted vocabulary extension-augmenting a pretrained LLM's vocabulary with chemically salient tokens, followed by continued pretraining on chemistry-domain text to integrate this new knowledge. We provide an empirical demonstration of the effectiveness of this strategy, showing that our methodology leads to superior performance on a range of downstream chemical tasks.
Mitigating Label Length Bias in Large Language Models
Venue: arXiv cs.CL 2025
Year: 2025

Large language models (LLMs) are powerful zero- and few-shot learners. However, when predicting over a set of candidate options, LLMs suffer from label biases, and existing calibration methods overlook biases arising from multi-token class labels. We tackle an issue we call label length bias, where labels of different lengths are treated inconsistently, even after standard length normalization. To mitigate it, we propose normalized contextual calibration (NCC), an effective method that normalizes and calibrates predictions at the full-label level. NCC achieves statistically significant improvements over prior approaches across multiple datasets and models, with gains of up to 10% F1. Moreover, NCC extends bias mitigation to broader tasks such as multiple-choice question answering. Our analysis shows that, when combined with in-context learning, NCC is less sensitive to few-shot example selection, requires fewer examples for competitive performance, and produces more reliable confidence estimates. These findings highlight the importance of mitigating full-label biases to improve the performance and robustness of LLM-based methods, particularly in real-world applications where class labels naturally consist of multiple tokens.
Continuous Vision-Language-Action Co-Learning with Semantic-Physical Alignment for Behavioral Cloning
Venue: arXiv cs.RO 2025
Year: 2025

Language-conditioned manipulation facilitates human-robot interaction via behavioral cloning (BC), which learns control policies from human demonstrations and serves as a cornerstone of embodied AI. Overcoming compounding errors in sequential action decisions remains a central challenge to improving BC performance. Existing approaches mitigate compounding errors through data augmentation, expressive representation, or temporal abstraction. However, they suffer from physical discontinuities and semantic-physical misalignment, leading to inaccurate action cloning and intermittent execution. In this paper, we present Continuous vision-language-action Co-Learning with Semantic-Physical Alignment (CCoL), a novel BC framework that ensures temporally consistent execution and fine-grained semantic grounding. It generates robust and smooth action execution trajectories through continuous co-learning across vision, language, and proprioceptive inputs (e.g., robot internal states). Meanwhile, we anchor language semantics to visuomotor representations by a bidirectional cross-attention to learn contextual information for action generation, successfully overcoming the problem of semantic-physical misalignment. Extensive experiments show that CCoL achieves an average 8.0% relative improvement across three simulation suites, with up to 19.2% relative gain in human-demonstrated bimanual insertion tasks. Real-world tests on a 7-DoF robot further confirm CCoL's generalization under unseen and noisy object states.
Cranio-ID: Graph-Based Craniofacial Identification via Automatic Landmark Annotation in 2D Multi-View X-rays
Venue: arXiv cs.CV 2025
Year: 2025

In forensic craniofacial identification and in many biomedical applications, craniometric landmarks are important. Traditional methods for locating landmarks are time-consuming and require specialized knowledge and expertise. Current methods utilize superimposition and deep learning-based methods that employ automatic annotation of landmarks. However, these methods are not reliable due to insufficient large-scale validation studies. In this paper, we proposed a novel framework Cranio-ID: First, an automatic annotation of landmarks on 2D skulls (which are X-ray scans of faces) with their respective optical images using our trained YOLO-pose models. Second, cross-modal matching by formulating these landmarks into graph representations and then finding semantic correspondence between graphs of these two modalities using cross-attention and optimal transport framework. Our proposed framework is validated on the S2F and CUHK datasets (CUHK dataset resembles with S2F dataset). Extensive experiments have been conducted to evaluate the performance of our proposed framework, which demonstrates significant improvements in both reliability and accuracy, as well as its effectiveness in cross-domain skull-to-face and sketch-to-face matching in forensic science.
Unified Defense for Large Language Models against Jailbreak and Fine-Tuning Attacks in Education
Venue: arXiv cs.CL 2025
Year: 2025

Large Language Models (LLMs) are increasingly integrated into educational applications. However, they remain vulnerable to jailbreak and fine-tuning attacks, which can compromise safety alignment and lead to harmful outputs. Existing studies mainly focus on general safety evaluations, with limited attention to the unique safety requirements of educational scenarios. To address this gap, we construct EduHarm, a benchmark containing safe-unsafe instruction pairs across five representative educational scenarios, enabling systematic safety evaluation of educational LLMs. Furthermore, we propose a three-stage shield framework (TSSF) for educational LLMs that simultaneously mitigates both jailbreak and fine-tuning attacks. First, safety-aware attention realignment redirects attention toward critical unsafe tokens, thereby restoring the harmfulness feature that discriminates between unsafe and safe inputs. Second, layer-wise safety judgment identifies harmfulness features by aggregating safety cues across multiple layers to detect unsafe instructions. Finally, defense-driven dual routing separates safe and unsafe queries, ensuring normal processing for benign inputs and guarded responses for harmful ones. Extensive experiments across eight jailbreak attack strategies demonstrate that TSSF effectively strengthens safety while preventing over-refusal of benign queries. Evaluations on three fine-tuning attack datasets further show that it consistently achieves robust defense against harmful queries while maintaining preserving utility gains from benign fine-tuning.
Hybrid Modeling of Photoplethysmography for Non-invasive Monitoring of Cardiovascular Parameters
Venue: arXiv cs.LG 2025
Year: 2025

Continuous cardiovascular monitoring can play a key role in precision health. However, some fundamental cardiac biomarkers of interest, including stroke volume and cardiac output, require invasive measurements, e.g., arterial pressure waveforms (APW). As a non-invasive alternative, photoplethysmography (PPG) measurements are routinely collected in hospital settings. Unfortunately, the prediction of key cardiac biomarkers from PPG instead of APW remains an open challenge, further complicated by the scarcity of annotated PPG measurements. As a solution, we propose a hybrid approach that uses hemodynamic simulations and unlabeled clinical data to estimate cardiovascular biomarkers directly from PPG signals. Our hybrid model combines a conditional variational autoencoder trained on paired PPG-APW data with a conditional density estimator of cardiac biomarkers trained on labeled simulated APW segments. As a key result, our experiments demonstrate that the proposed approach can detect fluctuations of cardiac output and stroke volume and outperform a supervised baseline in monitoring temporal changes in these biomarkers.
Nonparametric estimation of conditional probability distributions using a generative approach based on conditional push-forward neural networks
Venue: arXiv cs.LG 2025
Year: 2025

We introduce conditional push-forward neural networks (CPFN), a generative framework for conditional distribution estimation. Instead of directly modeling the conditional density $f_{Y|X}$, CPFN learns a stochastic map $φ=φ(x,u)$ such that $φ(x,U)$ and $Y|X=x$ follow approximately the same law, with $U$ a suitable random vector of pre-defined latent variables. This enables efficient conditional sampling and straightforward estimation of conditional statistics through Monte Carlo methods. The model is trained via an objective function derived from a Kullback-Leibler formulation, without requiring invertibility or adversarial training. We establish a near-asymptotic consistency result and demonstrate experimentally that CPFN can achieve performance competitive with, or even superior to, state-of-the-art methods, including kernel estimators, tree-based algorithms, and popular deep learning techniques, all while remaining lightweight and easy to train.