OpenRaiser/Intern-Atlas huggingface dataset:
From artificial to organic: Rethinking the roots of intelligence for digital health
Venue: arXiv cs.AI 2025
Year: 2025

The term artificial implies an inherent dichotomy from the natural or organic. However, AI, as we know it, is a product of organic ingenuity: designed, implemented, and iteratively improved by human cognition. The very principles that underpin AI systems, from neural networks to decision-making algorithms, are inspired by the organic intelligence embedded in human neurobiology and evolutionary processes. The path from organic to artificial intelligence in digital health is neither mystical nor merely a matter of parameter count, it is fundamentally about organization and adaption. Thus, the boundaries between artificial and organic are far less distinct than the nomenclature suggests.
Sark: Oblivious Integrity Without Global State
Venue: arXiv cs.CR 2025
Year: 2025

In this paper, we introduce Sark, a reference architecture implementing the Unforgeable, Stateful, and Oblivious (USO) asset system as described by Goodell, Toliver, and Nakib. We describe the motivation, design, and implementation of Sloop, a permissioned, crash fault-tolerant (CFT) blockchain that forms a subsystem of Sark, and the other core subsystems, Porters, which accumulate and roll-up commitments from Clients. We analyse the operation of the system using the 'CIA Triad': Confidentiality, Availability, and Integrity. We then introduce the concept of Integrity Locus and use it to address design trade-offs related to decentralization. Finally, we point to future work on Byzantine fault-tolerance (BFT), and mitigating the local centrality of Porters.
NULLBUS: Multimodal Mixed-Supervision for Breast Ultrasound Segmentation via Nullable Global-Local Prompts
Venue: arXiv cs.CV 2025
Year: 2025

Breast ultrasound (BUS) segmentation provides lesion boundaries essential for computer-aided diagnosis and treatment planning. While promptable methods can improve segmentation performance and tumor delineation when text or spatial prompts are available, many public BUS datasets lack reliable metadata or reports, constraining training to small multimodal subsets and reducing robustness. We propose NullBUS, a multimodal mixed-supervision framework that learns from images with and without prompts in a single model. To handle missing text, we introduce nullable prompts, implemented as learnable null embeddings with presence masks, enabling fallback to image-only evidence when metadata are absent and the use of text when present. Evaluated on a unified pool of three public BUS datasets, NullBUS achieves a mean IoU of 0.8568 and a mean Dice of 0.9103, demonstrating state-of-the-art performance under mixed prompt availability.
Measuring Mechanistic Independence: Can Bias Be Removed Without Erasing Demographics?
Venue: arXiv cs.CL 2025
Year: 2025

We investigate how independent demographic bias mechanisms are from general demographic recognition in language models. Using a multi-task evaluation setup where demographics are associated with names, professions, and education levels, we measure whether models can be debiased while preserving demographic detection capabilities. We compare attribution-based and correlation-based methods for locating bias features. We find that targeted sparse autoencoder feature ablations in Gemma-2-9B reduce bias without degrading recognition performance: attribution-based ablations mitigate race and gender profession stereotypes while preserving name recognition accuracy, whereas correlation-based ablations are more effective for education bias. Qualitative analysis further reveals that removing attribution features in education tasks induces ``prior collapse'', thus increasing overall bias. This highlights the need for dimension-specific interventions. Overall, our results show that demographic bias arises from task-specific mechanisms rather than absolute demographic markers, and that mechanistic inference-time interventions can enable surgical debiasing without compromising core model capabilities.
Hardware-Algorithm Co-Design for Hyperdimensional Computing Based on Memristive System-on-Chip
Venue: arXiv cs.ET 2025
Year: 2025

Hyperdimensional computing (HDC), utilizing a parallel computing paradigm and efficient learning algorithm, is well-suited for resource-constrained artificial intelligence (AI) applications, such as in edge devices. In-memory computing (IMC) systems based on memristive devices complement this by offering energy-efficient hardware solutions. To harness the advantages of both memristive IMC hardware and HDC algorithms, we propose a hardware-algorithm co-design approach for implementing HDC on a memristive System-on-Chip (SoC). On the hardware side, we utilize the inherent randomness of memristive crossbar arrays for encoding and employ analog IMC for classification. At the algorithm level, we develop hardware-aware encoding techniques that map data features into hyperdimensional vectors, optimizing the classification process within the memristive SoC. Experimental results in hardware demonstrate 90.71% accuracy in the language classification task, highlighting the potential of our approach for achieving energy-efficient AI deployments on edge devices.
Learning to Sense for Driving: Joint Optics-Sensor-Model Co-Design for Semantic Segmentation
Venue: arXiv cs.CV 2025
Year: 2025

Traditional autonomous driving pipelines decouple camera design from downstream perception, relying on fixed optics and handcrafted ISPs that prioritize human viewable imagery rather than machine semantics. This separation discards information during demosaicing, denoising, or quantization, while forcing models to adapt to sensor artifacts. We present a task-driven co-design framework that unifies optics, sensor modeling, and lightweight semantic segmentation networks into a single end-to-end RAW-to-task pipeline. Building on DeepLens[19], our system integrates realistic cellphone-scale lens models, learnable color filter arrays, Poisson-Gaussian noise processes, and quantization, all optimized directly for segmentation objectives. Evaluations on KITTI-360 show consistent mIoU improvements over fixed pipelines, with optics modeling and CFA learning providing the largest gains, especially for thin or low-light-sensitive classes. Importantly, these robustness gains are achieved with a compact ~1M-parameter model running at ~28 FPS, demonstrating edge deployability. Visual and quantitative analyses further highlight how co-designed sensors adapt acquisition to semantic structure, sharpening boundaries and maintaining accuracy under blur, noise, and low bit-depth. Together, these findings establish full-stack co-optimization of optics, sensors, and networks as a principled path toward efficient, reliable, and deployable perception in autonomous systems.
How important is Recall for Measuring Retrieval Quality?
Venue: arXiv cs.CL 2025
Year: 2025

In realistic retrieval settings with large and evolving knowledge bases, the total number of documents relevant to a query is typically unknown, and recall cannot be computed. In this paper, we evaluate several established strategies for handling this limitation by measuring the correlation between retrieval quality metrics and LLM-based judgments of response quality, where responses are generated from the retrieved documents. We conduct experiments across multiple datasets with a relatively low number of relevant documents (2-15). We also introduce a simple retrieval quality measure that performs well without requiring knowledge of the total number of relevant documents.
NVIDIA Nemotron 3: Efficient and Open Intelligence
Venue: arXiv cs.CL 2025
Year: 2025

We introduce the Nemotron 3 family of models - Nano, Super, and Ultra. These models deliver strong agentic, reasoning, and conversational capabilities. The Nemotron 3 family uses a Mixture-of-Experts hybrid Mamba-Transformer architecture to provide best-in-class throughput and context lengths of up to 1M tokens. Super and Ultra models are trained with NVFP4 and incorporate LatentMoE, a novel approach that improves model quality. The two larger models also include MTP layers for faster text generation. All Nemotron 3 models are post-trained using multi-environment reinforcement learning enabling reasoning, multi-step tool use, and support granular reasoning budget control. Nano, the smallest model, outperforms comparable models in accuracy while remaining extremely cost-efficient for inference. Super is optimized for collaborative agents and high-volume workloads such as IT ticket automation. Ultra, the largest model, provides state-of-the-art accuracy and reasoning performance. Nano is released together with its technical report and this white paper, while Super and Ultra will follow in the coming months. We will openly release the model weights, pre- and post-training software, recipes, and all data for which we hold redistribution rights.
In-Place BWT and Lyndon Array Construction in Constant Space
Venue: arXiv cs.DS 2025
Year: 2025

We present an extension of the in-place BWT algorithm of Crochemore et al. [8] that enables the construction of the Lyndon array using O(1) extra space. Our approach incrementally maintains the lexicographic ranks of the suffixes during the right-to-left BWT construction and then derives the Lyndon array through a simple next-smaller-value procedure. Although not intended for practical use due to its quadratic running time, the method is conceptually simple and works for unbounded alphabets.
Better Call Graphs: A New Dataset of Function Call Graphs for Malware Classification
Venue: arXiv cs.CR 2025
Year: 2025

Function call graphs (FCGs) have emerged as a powerful abstraction for malware detection, capturing the behavioral structure of applications beyond surface-level signatures. Their utility in traditional program analysis has been well established, enabling effective classification and analysis of malicious software. In the mobile domain, especially in the Android ecosystem, FCG-based malware classification is particularly critical due to the platform's widespread adoption and the complex, component-based structure of Android apps. However, progress in this direction is hindered by the lack of large-scale, high-quality Android-specific FCG datasets. Existing datasets are often outdated, dominated by small or redundant graphs resulting from app repackaging, and fail to reflect the diversity of real-world malware. These limitations lead to overfitting and unreliable evaluation of graph-based classification methods. To address this gap, we introduce Better Call Graphs (BCG), a comprehensive dataset of large and unique FCGs extracted from recent Android application packages (APKs). BCG includes both benign and malicious samples spanning various families and types, along with graph-level features for each APK. Through extensive experiments using baseline classifiers, we demonstrate the necessity and value of BCG compared to existing datasets. BCG is publicly available at https://erdemub.github.io/BCG-dataset.
Architectural Trade-offs in Small Language Models Under Compute Constraints
Venue: arXiv cs.CL 2025
Year: 2025

We present a systematic empirical study of small language models under strict compute constraints, analyzing how architectural choices and training budget interact to determine performance. Starting from a linear next-token predictor, we progressively introduce nonlinearities, self-attention, and multi-layer transformer architectures, evaluating each on character-level modeling of Tiny Shakespeare and word-level modeling of Penn Treebank (PTB) and WikiText-2. We compare models using test negative log-likelihood (NLL), parameter count, and approximate training FLOPs to characterize accuracy-efficiency trade-offs. Our results show that attention-based models dominate MLPs in per-FLOP efficiency even at small scale, while increasing depth or context without sufficient optimization can degrade performance. We further examine rotary positional embeddings (RoPE), finding that architectural techniques successful in large language models do not necessarily transfer to small-model regimes.
ReACT-Drug: Reaction-Template Guided Reinforcement Learning for de novo Drug Design
Venue: arXiv cs.LG 2025
Year: 2025

De novo drug design is a crucial component of modern drug development, yet navigating the vast chemical space to find synthetically accessible, high-affinity candidates remains a significant challenge. Reinforcement Learning (RL) enhances this process by enabling multi-objective optimization and exploration of novel chemical space - capabilities that traditional supervised learning methods lack. In this work, we introduce \textbf{ReACT-Drug}, a fully integrated, target-agnostic molecular design framework based on Reinforcement Learning. Unlike models requiring target-specific fine-tuning, ReACT-Drug utilizes a generalist approach by leveraging ESM-2 protein embeddings to identify similar proteins for a given target from a knowledge base such as Protein Data Base (PDB). Thereafter, the known drug ligands corresponding to such proteins are decomposed to initialize a fragment-based search space, biasing the agent towards biologically relevant subspaces. For each such fragment, the pipeline employs a Proximal Policy Optimization (PPO) agent guiding a ChemBERTa-encoded molecule through a dynamic action space of chemically valid, reaction-template-based transformations. This results in the generation of \textit{de novo} drug candidates with competitive binding affinities and high synthetic accessibility, while ensuring 100\% chemical validity and novelty as per MOSES benchmarking. This architecture highlights the potential of integrating structural biology, deep representation learning, and chemical synthesis rules to automate and accelerate rational drug design. The dataset and code are available at https://github.com/YadunandanRaman/ReACT-Drug/.
DAO-Agent: Zero Knowledge-Verified Incentives for Decentralized Multi-Agent Coordination
Venue: arXiv cs.MA 2025
Year: 2025

Autonomous Large Language Model (LLM)-based multi-agent systems have emerged as a promising paradigm for facilitating cross-application and cross-organization collaborations. These autonomous agents often operate in trustless environments, where centralized coordination faces significant challenges, such as the inability to ensure transparent contribution measurement and equitable incentive distribution. While blockchain is frequently proposed as a decentralized coordination platform, it inherently introduces high on-chain computation costs and risks exposing sensitive execution information of the agents. Consequently, the core challenge lies in enabling auditable task execution and fair incentive distribution for autonomous LLM agents in trustless environments, while simultaneously preserving their strategic privacy and minimizing on-chain costs. To address this challenge, we propose DAO-Agent, a novel framework that integrates three key technical innovations: (1) an on-chain decentralized autonomous organization (DAO) governance mechanism for transparent coordination and immutable logging; (2) a ZKP mechanism approach that enables Shapley-based contribution measurement off-chain, and (3) a hybrid on-chain/off-chain architecture that verifies ZKP-validated contribution measurements on-chain with minimal computational overhead. We implement DAO-Agent and conduct end-to-end experiments using a crypto trading task as a case study. Experimental results demonstrate that DAO-Agent achieves up to 99.9% reduction in verification gas costs compared to naive on-chain alternatives, with constant-time verification complexity that remains stable as coalition size increases, thereby establishing a scalable foundation for agent coordination in decentralized environments.
GateBreaker: Gate-Guided Attacks on Mixture-of-Expert LLMs
Venue: arXiv cs.CR 2025
Year: 2025

Mixture-of-Experts (MoE) architectures have advanced the scaling of Large Language Models (LLMs) by activating only a sparse subset of parameters per input, enabling state-of-the-art performance with reduced computational cost. As these models are increasingly deployed in critical domains, understanding and strengthening their alignment mechanisms is essential to prevent harmful outputs. However, existing LLM safety research has focused almost exclusively on dense architectures, leaving the unique safety properties of MoEs largely unexamined. The modular, sparsely-activated design of MoEs suggests that safety mechanisms may operate differently than in dense models, raising questions about their robustness. In this paper, we present GateBreaker, the first training-free, lightweight, and architecture-agnostic attack framework that compromises the safety alignment of modern MoE LLMs at inference time. GateBreaker operates in three stages: (i) gate-level profiling, which identifies safety experts disproportionately routed on harmful inputs, (ii) expert-level localization, which localizes the safety structure within safety experts, and (iii) targeted safety removal, which disables the identified safety structure to compromise the safety alignment. Our study shows that MoE safety concentrates within a small subset of neurons coordinated by sparse routing. Selective disabling of these neurons, approximately 3% of neurons in the targeted expert layers, significantly increases the averaged attack success rate (ASR) from 7.4% to 64.9% against the eight latest aligned MoE LLMs with limited utility degradation. These safety neurons transfer across models within the same family, raising ASR from 17.9% to 67.7% with one-shot transfer attack. Furthermore, GateBreaker generalizes to five MoE vision language models (VLMs) with 60.9% ASR on unsafe image inputs.
ESCHER: Efficient and Scalable Hypergraph Evolution Representation with Application to Triad Counting
Venue: arXiv cs.DC 2025
Year: 2025

Higher-order interactions beyond pairwise relationships in large complex networks are often modeled as hypergraphs. Analyzing hypergraph properties such as triad counts is essential, as hypergraphs can reveal intricate group interaction patterns that conventional graphs fail to capture. In real-world scenarios, these networks are often large and dynamic, introducing significant computational challenges. Due to the absence of specialized software packages and data structures, the analysis of large dynamic hypergraphs remains largely unexplored. Motivated by this gap, we propose ESCHER, a GPU-centric parallel data structure for Efficient and Scalable Hypergraph Evolution Representation, designed to manage large scale hypergraph dynamics efficiently. We also design a hypergraph triad-count update framework that minimizes redundant computation while fully leveraging the capabilities of ESCHER for dynamic operations. We validate the efficacy of our approach across multiple categories of hypergraph triad counting, including hyperedge-based, incident-vertex-based, and temporal triads. Empirical results on both large real-world and synthetic datasets demonstrate that our proposed method outperforms existing state-of-the-art methods, achieving speedups of up to 104.5x, 473.7x, and 112.5x for hyperedge-based, incident-vertex-based, and temporal triad types, respectively.
Multimodal Skeleton-Based Action Representation Learning via Decomposition and Composition
Venue: arXiv cs.CV 2025
Year: 2025

Multimodal human action understanding is a significant problem in computer vision, with the central challenge being the effective utilization of the complementarity among diverse modalities while maintaining model efficiency. However, most existing methods rely on simple late fusion to enhance performance, which results in substantial computational overhead. Although early fusion with a shared backbone for all modalities is efficient, it struggles to achieve excellent performance. To address the dilemma of balancing efficiency and effectiveness, we introduce a self-supervised multimodal skeleton-based action representation learning framework, named Decomposition and Composition. The Decomposition strategy meticulously decomposes the fused multimodal features into distinct unimodal features, subsequently aligning them with their respective ground truth unimodal counterparts. On the other hand, the Composition strategy integrates multiple unimodal features, leveraging them as self-supervised guidance to enhance the learning of multimodal representations. Extensive experiments on the NTU RGB+D 60, NTU RGB+D 120, and PKU-MMD II datasets demonstrate that the proposed method strikes an excellent balance between computational cost and model performance.
UniRec-0.1B: Unified Text and Formula Recognition with 0.1B Parameters
Venue: arXiv cs.CV 2025
Year: 2025

Text and formulas constitute the core informational components of many documents. Accurately and efficiently recognizing both is crucial for developing robust and generalizable document parsing systems. Recently, vision-language models (VLMs) have achieved impressive unified recognition of text and formulas. However, they are large-sized and computationally demanding, restricting their usage in many applications. In this paper, we propose UniRec-0.1B, a unified recognition model with only 0.1B parameters. It is capable of performing text and formula recognition at multiple levels, including characters, words, lines, paragraphs, and documents. To implement this task, we first establish UniRec40M, a large-scale dataset comprises 40 million text, formula and their mix samples, enabling the training of a powerful yet lightweight model. Secondly, we identify two challenges when building such a lightweight but unified expert model. They are: structural variability across hierarchies and semantic entanglement between textual and formulaic content. To tackle these, we introduce a hierarchical supervision training that explicitly guides structural comprehension, and a semantic-decoupled tokenizer that separates text and formula representations. Finally, we develop a comprehensive evaluation benchmark covering Chinese and English documents from multiple domains and with multiple levels. Experimental results on this and public benchmarks demonstrate that UniRec-0.1B outperforms both general-purpose VLMs and leading document parsing expert models, while achieving a 2-9$\times$ speedup, validating its effectiveness and efficiency. Codebase and Dataset: https://github.com/Topdu/OpenOCR.