OpenRaiser/Intern-Atlas huggingface dataset:
Mind the data gap: Missingness Still Shapes Large Language Model Prognoses
Venue: arXiv cs.AI 2025
Year: 2025

Data collection often reflects human decisions. In healthcare, for instance, a referral for a diagnostic test is influenced by the patient's health, their preferences, available resources, and the practitioner's recommendations. Despite the extensive literature on the informativeness of missingness, its implications on the performance of Large Language Models (LLMs) have not been studied. Through a series of experiments on data from Columbia University Medical Center, a large urban academic medical center, and MIMIC-IV, we demonstrate that patterns of missingness significantly impact zero-shot predictive performance. Notably, the explicit inclusion of missingness indicators at prompting benefits some while hurting other LLMs' zero-shot predictive performance and calibration, suggesting an inconsistent impact. The proposed aggregated analysis and theoretical insights suggest that larger models benefit from these interventions, while smaller models can be negatively impacted. The LLM paradigm risks obscuring the impact of missingness, often neglected even in conventional ML, even further. We conclude that there is a need for more transparent accounting and systematic evaluation of the impact of representing (informative) missingness on downstream performance.
Partial Cross-Compilation and Mixed Execution for Accelerating Dynamic Binary Translation
Venue: arXiv cs.AR 2025
Year: 2025

With the growing diversity of instruction set architectures (ISAs), cross-ISA program execution has become common. Dynamic binary translation (DBT) is the main solution but suffers from poor performance. Cross-compilation avoids emulation costs but is constrained by an "all-or-nothing" model-programs are either fully cross-compiled or entirely emulated. Complete cross-compilation is often unfeasible due to ISA-specific code or missing dependencies, leaving programs with high emulation overhead. We propose a hybrid execution system that combines compilation and emulation, featuring a selective function offloading mechanism. This mechanism establishes cross-environment calling channels, offloading eligible functions to the host for native execution to reduce DBT overhead. Key optimizations address offloading costs, enabling efficient hybrid operation. Built on LLVM and QEMU, the system works automatically for both applications and libraries. Evaluations show it achieves up to 13x speedups over existing DBT, with strong practical value.
Algorithmic Guarantees for Distilling Supervised and Offline RL Datasets
Venue: arXiv cs.LG 2025
Year: 2025

Given a training dataset, the goal of dataset distillation is to derive a synthetic dataset such that models trained on the latter perform as well as those trained on the training dataset. In this work, we develop and analyze an efficient dataset distillation algorithm for supervised learning, specifically regression in $\mathbb{R}^d$, based on matching the losses on the training and synthetic datasets with respect to a fixed set of randomly sampled regressors without any model training. Our first key contribution is a novel performance guarantee proving that our algorithm needs only $\tilde{O}(d^2)$ sampled regressors to derive a synthetic dataset on which the MSE loss of any bounded linear model is nearly the same as its MSE loss on the given training data. In particular, the model optimized on the synthetic data has close to minimum loss on the training data, thus performing nearly as well as the model optimized on the latter. Complementing this, we also prove a matching lower bound of $Ω(d^2)$ for the number of sampled regressors showing the tightness of our analysis. Our second contribution is to extend our algorithm to offline RL dataset distillation by matching the Bellman loss, unlike previous works which used a behavioral cloning objective. This is the first such method which leverages both, the rewards and the next state information, available in offline RL datasets, without any policy model optimization. Our algorithm generates a synthetic dataset whose Bellman loss with respect to any linear action-value predictor is close to the latter's Bellman loss on the offline RL training dataset. Therefore, a policy associated with an action-value predictor optimized on the synthetic dataset performs nearly as well as that derived from the one optimized on the training data. We conduct experiments to validate our theoretical guarantees and observe performance gains.
IslandRun: Privacy-Aware Multi-Objective Orchestration for Distributed AI Inference
Venue: arXiv cs.DC 2025
Year: 2025

Modern AI inference faces an irreducible tension: no single computational resource simultaneously maximizes performance, preserves privacy, minimizes cost, and maintains trust. Existing orchestration frameworks optimize single dimensions (Kubernetes prioritizes latency, federated learning preserves privacy, edge computing reduces network distance), creating solutions that struggle under real-world heterogeneity. We present IslandRun, a multi-objective orchestration system that treats computational resources as autonomous "islands" spanning personal devices, private edge servers, and public cloud. Our key insights: (1) request-level heterogeneity demands policy-constrained multi-objective optimization, (2) data locality enables routing compute to data rather than data to compute, and (3) typed placeholder sanitization preserves context semantics across trust boundaries. IslandRun introduces agent-based routing, tiered island groups with differential trust, and reversible anonymization. This establishes a new paradigm for privacy-aware, decentralized inference orchestration across heterogeneous personal computing ecosystems.
DLRREC: Denoising Latent Representations via Multi-Modal Knowledge Fusion in Deep Recommender Systems
Venue: arXiv cs.IR 2025
Year: 2025

Modern recommender systems struggle to effectively utilize the rich, yet high-dimensional and noisy, multi-modal features generated by Large Language Models (LLMs). Treating these features as static inputs decouples them from the core recommendation task. We address this limitation with a novel framework built on a key insight: deeply fusing multi-modal and collaborative knowledge for representation denoising. Our unified architecture introduces two primary technical innovations. First, we integrate dimensionality reduction directly into the recommendation model, enabling end-to-end co-training that makes the reduction process aware of the final ranking objective. Second, we introduce a contrastive learning objective that explicitly incorporates the collaborative filtering signal into the latent space. This synergistic process refines raw LLM embeddings, filtering noise while amplifying task-relevant signals. Extensive experiments confirm our method's superior discriminative power, proving that this integrated fusion and denoising strategy is critical for achieving state-of-the-art performance. Our work provides a foundational paradigm for effectively harnessing LLMs in recommender systems.
Clinical-R1: Empowering Large Language Models for Faithful and Comprehensive Reasoning with Clinical Objective Relative Policy Optimization
Venue: arXiv cs.AI 2025
Year: 2025

Recent advances in large language models (LLMs) have shown strong reasoning capabilities through large-scale pretraining and post-training reinforcement learning, demonstrated by DeepSeek-R1. However, current post-training methods, such as Grouped Relative Policy Optimization (GRPO), mainly reward correctness, which is not aligned with the multi-dimensional objectives required in high-stakes fields such as medicine, where reasoning must also be faithful and comprehensive. We introduce Clinical-Objective Relative Policy Optimization (CRPO), a scalable, multi-objective, verifiable reinforcement learning method designed to align LLM post-training with clinical reasoning principles. CRPO integrates rule-based and verifiable reward signals that jointly optimize accuracy, faithfulness, and comprehensiveness without relying on human annotation. To demonstrate its effectiveness, we train Clinical-R1-3B, a 3B-parameter model for clinical reasoning. The experiments on three benchmarks demonstrate that our CRPO substantially improves reasoning on truthfulness and completeness over standard GRPO while maintaining comfortable accuracy enhancements. This framework provides a scalable pathway to align LLM reasoning with clinical objectives, enabling safer and more collaborative AI systems for healthcare while also highlighting the potential of multi-objective, verifiable RL methods in post-training scaling of LLMs for medical domains.
Extended Abstract: Synthesizable Low-overhead Circuit-level Countermeasures and Pro-Active Detection Techniques for Power and EM SCA
Venue: arXiv cs.CR 2025
Year: 2025

The gamut of todays internet-connected embedded devices has led to increased concerns regarding the security and confidentiality of data. Most internet-connected embedded devices employ mathematically secure cryptographic algorithms to address security vulnerabilities. Despite such mathematical guarantees, as these algorithms are often implemented in silicon, they leak critical information in terms of power consumption, electromagnetic (EM) radiation, timing, cache hits and misses, photonic emission and so on, leading to side-channel analysis (SCA) attacks. This thesis focuses on low overhead generic circuit-level yet synthesizable countermeasures against power and EM SCA. Existing countermeasures (including proposed) still have relatively high overhead which bars them from being used in energy-constraint IoT devices. We propose a zero-overhead integrated inductive sensor which is able to detect i)EM SCA ii) Clock glitch-based Fault Injection Attack (FIA), and iii) Voltage-glitch based Fault Injection Attack by using a simple ML algorithm. Advent of quantum computer research will open new possibilities for theoretical attacks against existing cryptographic protocols. National Institute of Standard & Technology (NIST) has standardized post-quantum cryptographic algorithms to secure crypto-systems against quantum adversary. I contribute to the standardization procedure by introducing the first silicon-verified Saber (a NIST finalist modulo Learning with Rounding scheme) which consumes lowest energy and area till date amongst all the candidates.
Model of human cognition
Venue: arXiv cs.AI 2025
Year: 2025

The development of large language models (LLMs) is limited by a lack of explainability, the absence of a unifying theory, and prohibitive operational costs. We propose a neuro-theoretical framework for the emergence of intelligence in systems that is both functionally robust and biologically plausible. The model provides theoretical insights into cognitive processes such as decision-making and problem solving, and a computationally efficient approach for the creation of explainable and generalizable artificial intelligence.
Deep Learning-Based Computer Vision Models for Early Cancer Detection Using Multimodal Medical Imaging and Radiogenomic Integration Frameworks
Venue: arXiv cs.CV 2025
Year: 2025

Early cancer detection remains one of the most critical challenges in modern healthcare, where delayed diagnosis significantly reduces survival outcomes. Recent advancements in artificial intelligence, particularly deep learning, have enabled transformative progress in medical imaging analysis. Deep learning-based computer vision models, such as convolutional neural networks (CNNs), transformers, and hybrid attention architectures, can automatically extract complex spatial, morphological, and temporal patterns from multimodal imaging data including MRI, CT, PET, mammography, histopathology, and ultrasound. These models surpass traditional radiological assessment by identifying subtle tissue abnormalities and tumor microenvironment variations invisible to the human eye. At a broader scale, the integration of multimodal imaging with radiogenomics linking quantitative imaging features with genomics, transcriptomics, and epigenetic biomarkers has introduced a new paradigm for personalized oncology. This radiogenomic fusion allows the prediction of tumor genotype, immune response, molecular subtypes, and treatment resistance without invasive biopsies.
SpeContext: Enabling Efficient Long-context Reasoning with Speculative Context Sparsity in LLMs
Venue: arXiv cs.AI 2025
Year: 2025

In this paper, we point out that the objective of the retrieval algorithms is to align with the LLM, which is similar to the objective of knowledge distillation in LLMs. We analyze the similarity in information focus between the distilled language model(DLM) and the original LLM from the perspective of information theory, and thus propose a novel paradigm that leverages a DLM as the retrieval algorithm. Based on the insight, we present SpeContext, an algorithm and system co-design for long-context reasoning. (1) At the algorithm level, SpeContext proposes lightweight retrieval head based on the head-level attention weights of DLM, achieving > 90% parameters reduction by pruning the redundancy. (2) At the system level, SpeContext designs an asynchronous prefetch dataflow via the elastic loading strategy, effectively overlapping KV cache retrieval with the LLM computation. (3) At the compilation level, SpeContext constructs the theoretical memory model and implements an adaptive memory management system to achieve acceleration by maximizing GPU memory utilization. We deploy and evaluate SpeContext in two resourceconstrained environments, cloud and edge. Extensive experiments show that, compared with the Huggingface framework, SpeContext achieves up to 24.89x throughput improvement in cloud and 10.06x speedup in edge with negligible accuracy loss, pushing the Pareto frontier of accuracy and throughput.
TrajDiff: End-to-end Autonomous Driving without Perception Annotation
Venue: arXiv cs.CV 2025
Year: 2025

End-to-end autonomous driving systems directly generate driving policies from raw sensor inputs. While these systems can extract effective environmental features for planning, relying on auxiliary perception tasks, developing perception annotation-free planning paradigms has become increasingly critical due to the high cost of manual perception annotation. In this work, we propose TrajDiff, a Trajectory-oriented BEV Conditioned Diffusion framework that establishes a fully perception annotation-free generative method for end-to-end autonomous driving. TrajDiff requires only raw sensor inputs and future trajectory, constructing Gaussian BEV heatmap targets that inherently capture driving modalities. We design a simple yet effective trajectory-oriented BEV encoder to extract the TrajBEV feature without perceptual supervision. Furthermore, we introduce Trajectory-oriented BEV Diffusion Transformer (TB-DiT), which leverages ego-state information and the predicted TrajBEV features to directly generate diverse yet plausible trajectories, eliminating the need for handcrafted motion priors. Beyond architectural innovations, TrajDiff enables exploration of data scaling benefits in the annotation-free setting. Evaluated on the NAVSIM benchmark, TrajDiff achieves 87.5 PDMS, establishing state-of-the-art performance among all annotation-free methods. With data scaling, it further improves to 88.5 PDMS, which is comparable to advanced perception-based approaches. Our code and model will be made publicly available.
Augmented Runtime Collaboration for Self-Organizing Multi-Agent Systems: A Hybrid Bi-Criteria Routing Approach
Venue: arXiv cs.MA 2025
Year: 2025

LLM-based multi-agent systems have demonstrated significant capabilities across diverse domains. However, the task performance and efficiency are fundamentally constrained by their collaboration strategies. Prevailing approaches rely on static topologies and centralized global planning, a paradigm that limits their scalability and adaptability in open, decentralized networks. Effective collaboration planning in distributed systems using only local information thus remains a formidable challenge. To address this, we propose BiRouter, a novel dual-criteria routing method for Self-Organizing Multi-Agent Systems (SO-MAS). This method enables each agent to autonomously execute ``next-hop'' task routing at runtime, relying solely on local information. Its core decision-making mechanism is predicated on balancing two metrics: (1) the ImpScore, which evaluates a candidate agent's long-term importance to the overall goal, and (2) the GapScore, which assesses its contextual continuity for the current task state. Furthermore, we introduce a dynamically updated reputation mechanism to bolster system robustness in untrustworthy environments and have developed a large-scale, cross-domain dataset, comprising thousands of annotated task-routing paths, to enhance the model's generalization. Extensive experiments demonstrate that BiRouter achieves superior performance and token efficiency over existing baselines, while maintaining strong robustness and effectiveness in information-limited, decentralized, and untrustworthy settings.
MASCOT: Analyzing Malware Evolution Through A Well-Curated Source Code Dataset
Venue: arXiv cs.CR 2025
Year: 2025

In recent years, the explosion of malware and extensive code reuse have formed complex evolutionary connections among malware specimens. The rapid pace of development makes it challenging for existing studies to characterize recent evolutionary trends. In addition, intuitive tools to untangle these intricate connections between malware specimens or categories are urgently needed. This paper introduces a manually-reviewed malware source code dataset containing 6032 specimens. Building on and extending current research from a software engineering perspective, we systematically evaluate the scale, development costs, code quality, as well as security and dependencies of modern malware. We further introduce a multi-view genealogy analysis to clarify malware connections: at an overall view, this analysis quantifies the strength and direction of connections among specimens and categories; at a detailed view, it traces the evolutionary histories of individual specimens. Experimental results indicate that, despite persistent shortcomings in code quality, malware specimens exhibit an increasing complexity and standardization, in step with the development of mainstream software engineering practices. Meanwhile, our genealogy analysis intuitively reveals lineage expansion and evolution driven by code reuse, providing new evidence and tools for understanding the formation and evolution of the malware ecosystem.
The Outline of Deception: Physical Adversarial Attacks on Traffic Signs Using Edge Patches
Venue: arXiv cs.CV 2025
Year: 2025

Intelligent driving systems are vulnerable to physical adversarial attacks on traffic signs. These attacks can cause misclassification, leading to erroneous driving decisions that compromise road safety. Moreover, within V2X networks, such misinterpretations can propagate, inducing cascading failures that disrupt overall traffic flow and system stability. However, a key limitation of current physical attacks is their lack of stealth. Most methods apply perturbations to central regions of the sign, resulting in visually salient patterns that are easily detectable by human observers, thereby limiting their real-world practicality. This study proposes TESP-Attack, a novel stealth-aware adversarial patch method for traffic sign classification. Based on the observation that human visual attention primarily focuses on the central regions of traffic signs, we employ instance segmentation to generate edge-aligned masks that conform to the shape characteristics of the signs. A U-Net generator is utilized to craft adversarial patches, which are then optimized through color and texture constraints along with frequency domain analysis to achieve seamless integration with the background environment, resulting in highly effective visual concealment. The proposed method demonstrates outstanding attack success rates across traffic sign classification models with varied architectures, achieving over 90% under limited query budgets. It also exhibits strong cross-model transferability and maintains robust real-world performance that remains stable under varying angles and distances.
Code Comments for Quantum Software Development Kits: An Empirical Study on Qiskit
Venue: arXiv cs.SE 2025
Year: 2025

Quantum computing is gaining attention from academia and industry. With the quantum Software Development Kits (SDKs), programmers can develop quantum software to explore the power of quantum computing. However, programmers may face challenges in understanding quantum software due to the non-intuitive quantum mechanics. To facilitate software development and maintenance, code comments offered in quantum SDKs serve as a natural language explanation of program functionalities and logical flows. Despite their importance, scarce research systematically reports their value and provides constructive guidelines for programmers. To address this gap, our paper focuses on Qiskit, one of the most popular quantum SDKs, and presents CC4Q, the first dataset of code comments for quantum computing. CC4Q incorporates 9677 code comment pairs and 21970 sentence-level code comment units, the latter of which involve heavy human annotation. Regarding the annotation, we validate the applicability of the developer-intent taxonomy used in classical programs, and also propose a new taxonomy considering quantum-specific knowledge. We conduct an empirical study comprehensively interpreting code comments from three perspectives: comment structure and coverage, developers' intentions, and associated quantum topics. Our findings uncover key differences in code comments between classical and quantum software, and also outline quantum-specific knowledge relevant to quantum software development.
AI Agent for Source Finding by SoFiA-2 for SKA-SDC2
Venue: arXiv cs.LG 2025
Year: 2025

Source extraction is crucial in analyzing data from next-generation, large-scale sky surveys in radio bands, such as the Square Kilometre Array (SKA). Several source extraction programs, including SoFiA and Aegean, have been developed to address this challenge. However, finding optimal parameter configurations when applying these programs to real observations is non-trivial. For example, the outcomes of SoFiA intensely depend on several key parameters across its preconditioning, source-finding, and reliability-filtering modules. To address this issue, we propose a framework to automatically optimize these parameters using an AI agent based on a state-of-the-art reinforcement learning (RL) algorithm, i.e., Soft Actor-Critic (SAC). The SKA Science Data Challenge 2 (SDC2) dataset is utilized to assess the feasibility and reliability of this framework. The AI agent interacts with the environment by adjusting parameters based on the feedback from the SDC2 score defined by the SDC2 Team, progressively learning to select parameter sets that yield improved performance. After sufficient training, the AI agent can automatically identify an optimal parameter configuration that outperform the benchmark set by Team SoFiA within only 100 evaluation steps and with reduced time consumption. Our approach could address similar problems requiring complex parameter tuning, beyond radio band surveys and source extraction. Yet, high-quality training sets containing representative observations and catalogs of ground truth are essential.