OpenRaiser/Intern-Atlas huggingface dataset:
TabPFN: One Model to Rule Them All?
Venue: arXiv cs.LG 2025
Year: 2025

Hollmann et al. (Nature 637 (2025) 319-326) recently introduced TabPFN, a transformer-based deep learning model for regression and classification on tabular data, which they claim "outperforms all previous methods on datasets with up to 10,000 samples by a wide margin, using substantially less training time." Furthermore, they have called TabPFN a "foundation model" for tabular data, as it can support "data generation, density estimation, learning reusable embeddings and fine-tuning". In this paper, we provide a tailored explanation of how TabPFN works for a statistics audience, by emphasizing its interpretation as approximate Bayesian inference. We then explore the significance of TabPFN to the field of statistics: We show that an out-of-the-box application of TabPFN can sometimes outperform specialized state-of-the-art methods for semi-supervised parameter estimation, prediction under covariate shift, and heterogeneous treatment effect estimation. As a partial explanation for the predictive effectiveness of TabPFN, we show that it can simultaneously adapt to both nonparametric structure and parametric structure, for instance, sometimes outperforming LASSO even when assumptions are correctly specified. All experiments can be reproduced using the code provided at https://github.com/qinglong-tian/tabpfn_study (https://github.com/qinglong-tian/tabpfn_study).
TTPA: Token-level Tool-use Preference Alignment Training Framework with Fine-grained Evaluation
Venue: arXiv cs.CL 2025
Year: 2025

Existing tool-learning methods usually rely on supervised fine-tuning, they often overlook fine-grained optimization of internal tool call details, leading to limitations in preference alignment and error discrimination. To overcome these challenges, we propose Token-level Tool-use Preference Alignment Training Framework (TTPA), a training paradigm for constructing token-level tool-use preference datasets that align LLMs with fine-grained preferences using a novel error-oriented scoring mechanism. TTPA first introduces reversed dataset construction, a method for creating high-quality, multi-turn tool-use datasets by reversing the generation flow. Additionally, we propose Token-level Preference Sampling (TPS) to capture fine-grained preferences by modeling token-level differences during generation. To address biases in scoring, we introduce the Error-oriented Scoring Mechanism (ESM), which quantifies tool-call errors and can be used as a training signal. Extensive experiments on three diverse benchmark datasets demonstrate that TTPA significantly improves tool-using performance while showing strong generalization ability across models and datasets.
Ontology- and LLM-based Data Harmonization for Federated Learning in Healthcare
Venue: arXiv cs.LG 2025
Year: 2025

The rise of electronic health records (EHRs) has unlocked new opportunities for medical research, but privacy regulations and data heterogeneity remain key barriers to large-scale machine learning. Federated learning (FL) enables collaborative modeling without sharing raw data, yet faces challenges in harmonizing diverse clinical datasets. This paper presents a two-step data alignment strategy integrating ontologies and large language models (LLMs) to support secure, privacy-preserving FL in healthcare, demonstrating its effectiveness in a real-world project involving semantic mapping of EHR data.
M3DHMR: Monocular 3D Hand Mesh Recovery
Venue: arXiv cs.CV 2025
Year: 2025

Monocular 3D hand mesh recovery is challenging due to high degrees of freedom of hands, 2D-to-3D ambiguity and self-occlusion. Most existing methods are either inefficient or less straightforward for predicting the position of 3D mesh vertices. Thus, we propose a new pipeline called Monocular 3D Hand Mesh Recovery (M3DHMR) to directly estimate the positions of hand mesh vertices. M3DHMR provides 2D cues for 3D tasks from a single image and uses a new spiral decoder consist of several Dynamic Spiral Convolution (DSC) Layers and a Region of Interest (ROI) Layer. On the one hand, DSC Layers adaptively adjust the weights based on the vertex positions and extract the vertex features in both spatial and channel dimensions. On the other hand, ROI Layer utilizes the physical information and refines mesh vertices in each predefined hand region separately. Extensive experiments on popular dataset FreiHAND demonstrate that M3DHMR significantly outperforms state-of-the-art real-time methods.
Adaptive Deep Reasoning: Triggering Deep Thinking When Needed
Venue: arXiv cs.CL 2025
Year: 2025

Large language models (LLMs) have shown impressive capabilities in handling complex tasks through long-chain reasoning. However, the extensive reasoning steps involved can significantly increase computational costs, posing challenges for real-world deployment. Recent efforts have focused on optimizing reasoning efficiency by shortening the Chain-of-Thought (CoT) reasoning processes through various approaches, such as length-aware prompt engineering, supervised fine-tuning on CoT data with variable lengths, and reinforcement learning with length penalties. Although these methods effectively reduce reasoning length, they still necessitate an initial reasoning phase. More recent approaches have attempted to integrate long-chain and short-chain reasoning abilities into a single model, yet they still rely on manual control to toggle between short and long CoT. In this work, we propose a novel approach that autonomously switches between short and long reasoning chains based on problem complexity. Our method begins with supervised fine-tuning of the base model to equip both long-chain and short-chain reasoning abilities. We then employ reinforcement learning to further balance short and long CoT generation while maintaining accuracy through two key strategies: first, integrating reinforcement learning with a long-short adaptive group-wise reward strategy to assess prompt complexity and provide corresponding rewards; second, implementing a logit-based reasoning mode switching loss to optimize the model's initial token choice, thereby guiding the selection of the reasoning type. Evaluations on mathematical datasets demonstrate that our model can dynamically switch between long-chain and short-chain reasoning modes without substantially sacrificing performance. This advancement enhances the practicality of reasoning in large language models for real-world applications.
URPlanner: A Universal Paradigm For Collision-Free Robotic Motion Planning Based on Deep Reinforcement Learning
Venue: arXiv cs.RO 2025
Year: 2025

Collision-free motion planning for redundant robot manipulators in complex environments is yet to be explored. Although recent advancements at the intersection of deep reinforcement learning (DRL) and robotics have highlighted its potential to handle versatile robotic tasks, current DRL-based collision-free motion planners for manipulators are highly costly, hindering their deployment and application. This is due to an overreliance on the minimum distance between the manipulator and obstacles, inadequate exploration and decision-making by DRL, and inefficient data acquisition and utilization. In this article, we propose URPlanner, a universal paradigm for collision-free robotic motion planning based on DRL. URPlanner offers several advantages over existing approaches: it is platform-agnostic, cost-effective in both training and deployment, and applicable to arbitrary manipulators without solving inverse kinematics. To achieve this, we first develop a parameterized task space and a universal obstacle avoidance reward that is independent of minimum distance. Second, we introduce an augmented policy exploration and evaluation algorithm that can be applied to various DRL algorithms to enhance their performance. Third, we propose an expert data diffusion strategy for efficient policy learning, which can produce a large-scale trajectory dataset from only a few expert demonstrations. Finally, the superiority of the proposed methods is comprehensively verified through experiments.
Evaluating Large Language Models for Code Review
Venue: arXiv cs.SE 2025
Year: 2025

Context: Code reviews are crucial for software quality. Recent AI advances have allowed large language models (LLMs) to review and fix code; now, there are tools that perform these reviews. However, their reliability and accuracy have not yet been systematically evaluated. Objective: This study compares different LLMs' performance in detecting code correctness and suggesting improvements. Method: We tested GPT4o and Gemini 2.0 Flash on 492 AI generated code blocks of varying correctness, along with 164 canonical code blocks from the HumanEval benchmark. To simulate the code review task objectively, we expected LLMs to assess code correctness and improve the code if needed. We ran experiments with different configurations and reported on the results. Results: With problem descriptions, GPT4o and Gemini 2.0 Flash correctly classified code correctness 68.50% and 63.89% of the time, respectively, and corrected the code 67.83% and 54.26% of the time for the 492 code blocks of varying correctness. Without problem descriptions, performance declined. The results for the 164 canonical code blocks differed, suggesting that performance depends on the type of code. Conclusion: LLM code reviews can help suggest improvements and assess correctness, but there is a risk of faulty outputs. We propose a process that involves humans, called the "Human in the loop LLM Code Review" to promote knowledge sharing while mitigating the risk of faulty outputs.
From What to How: Attributing CLIP's Latent Components Reveals Unexpected Semantic Reliance
Venue: arXiv cs.LG 2025
Year: 2025

Transformer-based CLIP models are widely used for text-image probing and feature extraction, making it relevant to understand the internal mechanisms behind their predictions. While recent works show that Sparse Autoencoders (SAEs) yield interpretable latent components, they focus on what these encode and miss how they drive predictions. We introduce a scalable framework that reveals what latent components activate for, how they align with expected semantics, and how important they are to predictions. To achieve this, we adapt attribution patching for instance-wise component attributions in CLIP and highlight key faithfulness limitations of the widely used Logit Lens technique. By combining attributions with semantic alignment scores, we can automatically uncover reliance on components that encode semantically unexpected or spurious concepts. Applied across multiple CLIP variants, our method uncovers hundreds of surprising components linked to polysemous words, compound nouns, visual typography and dataset artifacts. While text embeddings remain prone to semantic ambiguity, they are more robust to spurious correlations compared to linear classifiers trained on image embeddings. A case study on skin lesion detection highlights how such classifiers can amplify hidden shortcuts, underscoring the need for holistic, mechanistic interpretability. We provide code at https://github.com/maxdreyer/attributing-clip.
Unleashing 5G Seamless Integration with TSN for Industry 5.0: Frame Forwarding and QoS Treatment
Venue: arXiv cs.NI 2025
Year: 2025

Integrating Time-Sensitive Networking (TSN) and 5th Generation (5G) systems is key for providing wireless low-latency services in industry. Despite research efforts, challenges remain. Due to the lack of commercial 5G modems supporting Ethernet-based sessions, tunneling mechanisms must be used to enable Layer 2 connectivity between TSN islands via IP-based 5G modems. Furthermore, harmonizing traffic classification and prioritization between TSN and 5G technologies is crucial for meeting industrial service requirements. In this work, we propose a Virtual Extensible LAN (VxLAN)-based solution to harmonize frame forwarding and Quality of Service (QoS) treatment among 5G and TSN. Our solution supports multiple Virtual Local Area Networks (VLANs) across several production lines. Furthermore, it supports TSN traffic mapping into 5G QoS flows. We use a 5G testbed to validate the effectiveness of the adopted solution. Our results show the average delay introduced by the proposed mechanisms is approximately 100 μs, which is significantly lower than the typical 5G packet transmission delay. Moreover, our findings demonstrate our solution preserves QoS treatment between the 5G system and TSN, ensuring that the priority of 5G QoS flows aligns with the priorities of industrial traffic flows.
WXImpactBench: A Disruptive Weather Impact Understanding Benchmark for Evaluating Large Language Models
Venue: arXiv cs.CL 2025
Year: 2025

Climate change adaptation requires the understanding of disruptive weather impacts on society, where large language models (LLMs) might be applicable. However, their effectiveness is under-explored due to the difficulty of high-quality corpus collection and the lack of available benchmarks. The climate-related events stored in regional newspapers record how communities adapted and recovered from disasters. However, the processing of the original corpus is non-trivial. In this study, we first develop a disruptive weather impact dataset with a four-stage well-crafted construction pipeline. Then, we propose WXImpactBench, the first benchmark for evaluating the capacity of LLMs on disruptive weather impacts. The benchmark involves two evaluation tasks, multi-label classification and ranking-based question answering. Extensive experiments on evaluating a set of LLMs provide first-hand analysis of the challenges in developing disruptive weather impact understanding and climate change adaptation systems. The constructed dataset and the code for the evaluation framework are available to help society protect against vulnerabilities from disasters.
Reinforcement Speculative Decoding for Fast Ranking
Venue: arXiv cs.AI 2025
Year: 2025

Large Language Models (LLMs) have been widely adopted in ranking systems such as information retrieval (IR) systems and recommender systems (RSs). To alleviate the latency of auto-regressive decoding, some studies explore the single (first) token decoding for ranking approximation, but they suffer from severe degradation in tail positions. Although speculative decoding (SD) methods can be a remedy with verification at different positions, they face challenges in ranking systems due to their left-to-right decoding paradigm. Firstly, ranking systems require strict latency constraints, but verification rounds in SD methods remain agnostic; Secondly, SD methods usually discard listwise ranking knowledge about unaccepted items in previous rounds, hindering future multi-token prediction, especially when candidate tokens are the unaccepted items. In this paper, we propose a Reinforcement Speculative Decoding method for fast ranking inference of LLMs. To meet the ranking systems' latency requirement, we propose an up-to-down decoding paradigm that employs an agent to iteratively modify the ranking sequence under a constrained budget. Specifically, we design a ranking-tailored policy optimization, actively exploring optimal multi-round ranking modification policy verified by LLMs via reinforcement learning (RL). To better approximate the target LLM under the constrained budget, we trigger the agent fully utilizing the listwise ranking knowledge about all items verified by LLMs across different rounds in RL, enhancing the modification policy of the agent. More importantly, we demonstrate the theoretical robustness and advantages of our paradigm and implementation. Experiments on both IR and RS tasks show the effectiveness of our proposed method.
Generative AI in Computer Science Education: Accelerating Python Learning with ChatGPT
Venue: arXiv cs.CY 2025
Year: 2025

The increasing demand for digital literacy and artificial intelligence (AI) fluency in the workforce has highlighted the need for scalable, efficient programming instruction. This study evaluates the effectiveness of integrating generative AI, specifically OpenAIs ChatGPT, into a self-paced Python programming module embedded within a sixteen-week professional training course on applied generative AI. A total of 86 adult learners with varying levels of programming experience completed asynchronous Python instruction in Weeks three and four, using ChatGPT to generate, interpret, and debug code. Python proficiency and general coding knowledge was assessed across 30 different assessments during the first 13 weeks of the course through timed, code-based evaluations. A mixed-design ANOVA revealed that learners without prior programming experience scored significantly lower than their peers on early assessments. However, following the completion of the accelerated Python instruction module, these group differences were no longer statistically significant,, indicating that the intervention effectively closed initial performance gaps and supported proficiency gains across all learner groups. These findings suggest that generative AI can support accelerated learning outcomes and reduce entry barriers for learners with no prior coding background. While ChatGPT effectively facilitated foundational skill acquisition, the study also highlights the importance of balancing AI assistance with opportunities for independent problem-solving. The results support the potential of AI-augmented instruction as a scalable model for reskilling in the digital economy.
Machine Theory of Mind and the Structure of Human Values
Venue: arXiv cs.AI 2025
Year: 2025

Value learning is a crucial aspect of safe and ethical AI. This is primarily pursued by methods inferring human values from behaviour. However, humans care about much more than we are able to demonstrate through our actions. Consequently, an AI must predict the rest of our seemingly complex values from a limited sample. I call this the value generalization problem. In this paper, I argue that human values have a generative rational structure and that this allows us to solve the value generalization problem. In particular, we can use Bayesian Theory of Mind models to infer human values not only from behaviour, but also from other values. This has been obscured by the widespread use of simple utility functions to represent human values. I conclude that developing generative value-to-value inference is a crucial component of achieving a scalable machine theory of mind.
Decision Flow Policy Optimization
Venue: arXiv cs.LG 2025
Year: 2025

In recent years, generative models have shown remarkable capabilities across diverse fields, including images, videos, language, and decision-making. By applying powerful generative models such as flow-based models to reinforcement learning, we can effectively model complex multi-modal action distributions and achieve superior robotic control in continuous action spaces, surpassing the limitations of single-modal action distributions with traditional Gaussian-based policies. Previous methods usually adopt the generative models as behavior models to fit state-conditioned action distributions from datasets, with policy optimization conducted separately through additional policies using value-based sample weighting or gradient-based updates. However, this separation prevents the simultaneous optimization of multi-modal distribution fitting and policy improvement, ultimately hindering the training of models and degrading the performance. To address this issue, we propose Decision Flow, a unified framework that integrates multi-modal action distribution modeling and policy optimization. Specifically, our method formulates the action generation procedure of flow-based models as a flow decision-making process, where each action generation step corresponds to one flow decision. Consequently, our method seamlessly optimizes the flow policy while capturing multi-modal action distributions. We provide rigorous proofs of Decision Flow and validate the effectiveness through extensive experiments across dozens of offline RL environments. Compared with established offline RL baselines, the results demonstrate that our method achieves or matches the SOTA performance.
Rethinking Text-based Protein Understanding: Retrieval or LLM?
Venue: arXiv cs.CL 2025
Year: 2025

In recent years, protein-text models have gained significant attention for their potential in protein generation and understanding. Current approaches focus on integrating protein-related knowledge into large language models through continued pretraining and multi-modal alignment, enabling simultaneous comprehension of textual descriptions and protein sequences. Through a thorough analysis of existing model architectures and text-based protein understanding benchmarks, we identify significant data leakage issues present in current benchmarks. Moreover, conventional metrics derived from natural language processing fail to accurately assess the model's performance in this domain. To address these limitations, we reorganize existing datasets and introduce a novel evaluation framework based on biological entities. Motivated by our observation, we propose a retrieval-enhanced method, which significantly outperforms fine-tuned LLMs for protein-to-text generation and shows accuracy and efficiency in training-free scenarios. Our code and data can be seen at https://github.com/IDEA-XL/RAPM.
Learning and Interpreting Gravitational-Wave Features from CNNs with a Random Forest Approach
Venue: arXiv cs.LG 2025
Year: 2025

Convolutional neural networks (CNNs) have become widely adopted in gravitational wave (GW) detection pipelines due to their ability to automatically learn hierarchical features from raw strain data. However, the physical meaning of these learned features remains underexplored, limiting the interpretability of such models. In this work, we propose a hybrid architecture that combines a CNN-based feature extractor with a random forest (RF) classifier to improve both detection performance and interpretability. Unlike prior approaches that directly connect classifiers to CNN outputs, our method introduces four physically interpretable metrics - variance, signal-to-noise ratio (SNR), waveform overlap, and peak amplitude - computed from the final convolutional layer. These are jointly used with the CNN output in the RF classifier to enable more informed decision boundaries. Tested on long-duration strain datasets, our hybrid model outperforms a baseline CNN model, achieving a relative improvement of 21\% in sensitivity at a fixed false alarm rate of 10 events per month. Notably, it also shows improved detection of low-SNR signals (SNR $\le$ 10), which are especially vulnerable to misclassification in noisy environments. Feature attribution via the RF model reveals that both CNN-extracted and handcrafted features contribute significantly to classification decisions, with learned variance and CNN outputs ranked among the most informative. These findings suggest that physically motivated post-processing of CNN feature maps can serve as a valuable tool for interpretable and efficient GW detection, bridging the gap between deep learning and domain knowledge.