OpenRaiser/Intern-Atlas huggingface dataset:
BanglaByT5: Byte-Level Modelling for Bangla
Venue: arXiv cs.CL 2025
Year: 2025

Large language models (LLMs) have achieved remarkable success across various natural language processing tasks. However, most LLM models use traditional tokenizers like BPE and SentencePiece, which fail to capture the finer nuances of a morphologically rich language like Bangla (Bengali). In this work, we introduce BanglaByT5, the first byte-level encoder-decoder model explicitly tailored for Bangla. Built upon a small variant of Googles ByT5 architecture, BanglaByT5 is pre-trained on a 14GB curated corpus combining high-quality literary and newspaper articles. Through zeroshot and supervised evaluations across generative and classification tasks, BanglaByT5 demonstrates competitive performance, surpassing several multilingual and larger models. Our findings highlight the efficacy of byte-level modelling for morphologically rich languages and highlight BanglaByT5 potential as a lightweight yet powerful tool for Bangla NLP, particularly in both resource-constrained and scalable environments.
RRTL: Red Teaming Reasoning Large Language Models in Tool Learning
Venue: arXiv cs.CL 2025
Year: 2025

While tool learning significantly enhances the capabilities of large language models (LLMs), it also introduces substantial security risks. Prior research has revealed various vulnerabilities in traditional LLMs during tool learning. However, the safety of newly emerging reasoning LLMs (RLLMs), such as DeepSeek-R1, in the context of tool learning remains underexplored. To bridge this gap, we propose RRTL, a red teaming approach specifically designed to evaluate RLLMs in tool learning. It integrates two novel strategies: (1) the identification of deceptive threats, which evaluates the model's behavior in concealing the usage of unsafe tools and their potential risks; and (2) the use of Chain-of-Thought (CoT) prompting to force tool invocation. Our approach also includes a benchmark for traditional LLMs. We conduct a comprehensive evaluation on seven mainstream RLLMs and uncover three key findings: (1) RLLMs generally achieve stronger safety performance than traditional LLMs, yet substantial safety disparities persist across models; (2) RLLMs can pose serious deceptive risks by frequently failing to disclose tool usage and to warn users of potential tool output risks; (3) CoT prompting reveals multi-lingual safety vulnerabilities in RLLMs. Our work provides important insights into enhancing the security of RLLMs in tool learning.
CRAKEN: Cybersecurity LLM Agent with Knowledge-Based Execution
Venue: arXiv cs.CR 2025
Year: 2025

Large Language Model (LLM) agents can automate cybersecurity tasks and can adapt to the evolving cybersecurity landscape without re-engineering. While LLM agents have demonstrated cybersecurity capabilities on Capture-The-Flag (CTF) competitions, they have two key limitations: accessing latest cybersecurity expertise beyond training data, and integrating new knowledge into complex task planning. Knowledge-based approaches that incorporate technical understanding into the task-solving automation can tackle these limitations. We present CRAKEN, a knowledge-based LLM agent framework that improves cybersecurity capability through three core mechanisms: contextual decomposition of task-critical information, iterative self-reflected knowledge retrieval, and knowledge-hint injection that transforms insights into adaptive attack strategies. Comprehensive evaluations with different configurations show CRAKEN's effectiveness in multi-stage vulnerability detection and exploitation compared to previous approaches. Our extensible architecture establishes new methodologies for embedding new security knowledge into LLM-driven cybersecurity agentic systems. With a knowledge database of CTF writeups, CRAKEN obtained an accuracy of 22% on NYU CTF Bench, outperforming prior works by 3% and achieving state-of-the-art results. On evaluation of MITRE ATT&CK techniques, CRAKEN solves 25-30% more techniques than prior work, demonstrating improved cybersecurity capabilities via knowledge-based execution. We make our framework open source to public https://github.com/NYU-LLM-CTF/nyuctf_agents_craken.
Mitigating Cyber Risk in the Age of Open-Weight LLMs: Policy Gaps and Technical Realities
Venue: arXiv cs.CR 2025
Year: 2025

Open-weight general-purpose AI (GPAI) models offer significant benefits but also introduce substantial cybersecurity risks, as demonstrated by the offensive capabilities of models like DeepSeek-R1 in evaluations such as MITRE's OCCULT. These publicly available models empower a wider range of actors to automate and scale cyberattacks, challenging traditional defence paradigms and regulatory approaches. This paper analyzes the specific threats -- including accelerated malware development and enhanced social engineering -- magnified by open-weight AI release. We critically assess current regulations, notably the EU AI Act and the GPAI Code of Practice, identifying significant gaps stemming from the loss of control inherent in open distribution, which renders many standard security mitigations ineffective. We propose a path forward focusing on evaluating and controlling specific high-risk capabilities rather than entire models, advocating for pragmatic policy interpretations for open-weight systems, promoting defensive AI innovation, and fostering international collaboration on standards and cyber threat intelligence (CTI) sharing to ensure security without unduly stifling open technological progress.
A Global Commuting Origin-Destination Flow Dataset for Urban Sustainable Development
Venue: arXiv cs.OH 2025
Year: 2025

Commuting Origin-Destination (OD) flows capture movements of people from residences to workplaces, representing the predominant form of intra-city mobility and serving as a critical reference for understanding urban dynamics and supporting sustainable policies. However, acquiring such data requires costly, time-consuming censuses. In this study, we introduce a commuting OD flow dataset for cities around the world, spanning 6 continents, 179 countries, and 1,625 cities, providing unprecedented coverage of dynamics under diverse urban environments. Specifically, we collected fine-grained demographic data, satellite imagery, and points of interest~(POIs) for each city as foundational inputs to characterize the functional roles of urban regions. Leveraging these, a deep generative model is employed to capture the complex relationships between urban geospatial features and human mobility, enabling the generation of commuting OD flows between urban regions. Comprehensively, validation shows that the spatial distributions of the generated flows closely align with real-world observations. We believe this dataset offers a valuable resource for advancing sustainable urban development research in urban science, data science, transportation engineering, and related fields.
Comparative Evaluation of Prompting and Fine-Tuning for Applying Large Language Models to Grid-Structured Geospatial Data
Venue: arXiv cs.CL 2025
Year: 2025

This paper presents a comparative study of large language models (LLMs) in interpreting grid-structured geospatial data. We evaluate the performance of a base model through structured prompting and contrast it with a fine-tuned variant trained on a dataset of user-assistant interactions. Our results highlight the strengths and limitations of zero-shot prompting and demonstrate the benefits of fine-tuning for structured geospatial and temporal reasoning.
Self-Interpretability: LLMs Can Describe Complex Internal Processes that Drive Their Decisions
Venue: arXiv cs.CL 2025
Year: 2025

We have only limited understanding of how and why large language models (LLMs) respond in the ways that they do. Their neural networks have proven challenging to interpret, and we are only beginning to tease out the function of individual neurons and circuits within them. However, another path to understanding these systems is to investigate and develop their capacity to explain their own functioning. Here, we show that i) LLMs can accurately describe quantitative features of their own internal processes during certain kinds of decision-making and ii) that it is possible to improve these capabilities through training. To do so, we fine-tuned GPT-4o and GPT-4o-mini to make decisions in a wide variety of complex contexts (e.g., choosing between condos, loans, vacations, etc.) according to randomly-generated, quantitative preferences about how to weigh different attributes (e.g., the relative importance of natural light versus quiet surroundings for condos). We demonstrate that the LLMs can accurately report these preferences (i.e., the weights that they learned to give to different attributes during decision-making). Next, we demonstrate that these LLMs can be fine-tuned to explain their decision-making even more accurately. Finally, we demonstrate that this training generalizes: It improves the ability of the models to accurately explain how they make other complex decisions, not just decisions they have been fine-tuned to make. This work is a step towards training LLMs to accurately and broadly report on their own internal processes -- a possibility that would yield substantial benefits for interpretability, control, and safety.
NeSyGeo: A Neuro-Symbolic Framework for Multimodal Geometric Reasoning Data Generation
Venue: arXiv cs.CL 2025
Year: 2025

Obtaining large-scale, high-quality reasoning data is crucial for improving the geometric reasoning capabilities of multi-modal large language models (MLLMs). However, existing data generation methods, whether based on predefined tem plates or constrained symbolic provers, inevitably face diversity and numerical generalization limitations. To address these limitations, we propose NeSyGeo, a novel neuro-symbolic framework for generating geometric reasoning data. First, we propose a domain-specific language grounded in the entity-attributes-relations paradigm to comprehensively represent all components of plane geometry, along with generative actions defined within this symbolic space. We then design a symbolic-visual-text pipeline that synthesizes symbolic sequences, maps them to visual and textual representations and generates reasoning path with reverse search and forward validation. Based on this framework, we construct NeSyGeo CoT and NeSyGeo-Caption datasets, containing 100k samples, and release a new benchmark NeSyGeo-Test for evaluating geometric reasoning abilities in MLLMs. Experiments demonstrate that the proposal significantly and consistently improves the performance of multiple MLLMs under both reinforcement and supervised fine-tuning. With only 4k samples and two epochs of reinforcement fine-tuning, base models achieve improvements of up to +15.8% on MathVision, +8.4% on MathVerse, and +7.3% on GeoQA. Notably, a 4B model can be improved to outperform an 8B model from the same series on geometric reasoning tasks.s
NEXT-EVAL: Next Evaluation of Traditional and LLM Web Data Record Extraction
Venue: arXiv cs.DB 2025
Year: 2025

Effective evaluation of web data record extraction methods is crucial, yet hampered by static, domain-specific benchmarks and opaque scoring practices. This makes fair comparison between traditional algorithmic techniques, which rely on structural heuristics, and Large Language Model (LLM)-based approaches, offering zero-shot extraction across diverse layouts, particularly challenging. To overcome these limitations, we introduce a concrete evaluation framework. Our framework systematically generates evaluation datasets from arbitrary MHTML snapshots, annotates XPath-based supervision labels, and employs structure-aware metrics for consistent scoring, specifically preventing text hallucination and allowing only for the assessment of positional hallucination. It also incorporates preprocessing strategies to optimize input for LLMs while preserving DOM semantics: HTML slimming, Hierarchical JSON, and Flat JSON. Additionally, we created a publicly available synthetic dataset by transforming DOM structures and modifying content. We benchmark deterministic heuristic algorithms and off-the-shelf LLMs across these multiple input formats. Our benchmarking shows that Flat JSON input enables LLMs to achieve superior extraction accuracy (F1 score of 0.9567) and minimal hallucination compared to other input formats like Slimmed HTML and Hierarchical JSON. We establish a standardized foundation for rigorous benchmarking, paving the way for the next principled advancements in web data record extraction.
Runtime Adaptive Pruning for LLM Inference
Venue: arXiv cs.LG 2025
Year: 2025

Large language models (LLMs) excel at language understanding and generation, but their enormous computational and memory requirements hinder deployment. Compression offers a potential solution to mitigate these constraints. However, most existing methods rely on fixed heuristics and thus fail to adapt to runtime memory variations or heterogeneous KV-cache demands arising from diverse user requests. To address these limitations, we propose RAP, an elastic pruning framework driven by reinforcement learning (RL) that dynamically adjusts compression strategies in a runtime-aware manner. Specifically, RAP dynamically tracks the evolving ratio between model parameters and KV-cache across practical execution. Recognizing that FFNs house most parameters, whereas parameter -light attention layers dominate KV-cache formation, the RL agent retains only those components that maximize utility within the current memory budget, conditioned on instantaneous workload and device state. Extensive experiments results demonstrate that RAP outperforms state-of-the-art baselines, marking the first time to jointly consider model weights and KV-cache on the fly.
Data Doping or True Intelligence? Evaluating the Transferability of Injected Knowledge in LLMs
Venue: arXiv cs.CL 2025
Year: 2025

As the knowledge of large language models (LLMs) becomes outdated over time, there is a growing need for efficient methods to update them, especially when injecting proprietary information. Our study reveals that comprehension-intensive fine-tuning tasks (e.g., question answering and blanks) achieve substantially higher knowledge retention rates (48%) compared to mapping-oriented tasks like translation (17%) or text-to-JSON conversion (20%), despite exposure to identical factual content. We demonstrate that this pattern persists across model architectures and follows scaling laws, with larger models showing improved retention across all task types. However, all models exhibit significant performance drops when applying injected knowledge in broader contexts, suggesting limited semantic integration. These findings show the importance of task selection in updating LLM knowledge, showing that effective knowledge injection relies not just on data exposure but on the depth of cognitive engagement during fine-tuning.
LSM-VEC: A Large-Scale Disk-Based System for Dynamic Vector Search
Venue: arXiv cs.DB 2025
Year: 2025

Vector search underpins modern AI applications by supporting approximate nearest neighbor (ANN) queries over high-dimensional embeddings in tasks like retrieval-augmented generation (RAG), recommendation systems, and multimodal search. Traditional ANN search indices (e.g., HNSW) are limited by memory constraints at large data scale. Disk-based indices such as DiskANN reduce memory overhead but rely on offline graph construction, resulting in costly and inefficient vector updates. The state-of-the-art clustering-based approach SPFresh offers better scalability but suffers from reduced recall due to coarse partitioning. Moreover, SPFresh employs in-place updates to maintain its index structure, limiting its efficiency in handling high-throughput insertions and deletions under dynamic workloads. This paper presents LSM-VEC, a disk-based dynamic vector index that integrates hierarchical graph indexing with LSM-tree storage. By distributing the proximity graph across multiple LSM-tree levels, LSM-VEC supports out-of-place vector updates. It enhances search efficiency via a sampling-based probabilistic search strategy with adaptive neighbor selection, and connectivity-aware graph reordering further reduces I/O without requiring global reconstruction. Experiments on billion-scale datasets demonstrate that LSM-VEC consistently outperforms existing disk-based ANN systems. It achieves higher recall, lower query and update latency, and reduces memory footprint by over 66.2%, making it well-suited for real-world large-scale vector search with dynamic updates.
Amplify Adjacent Token Differences: Enhancing Long Chain-of-Thought Reasoning with Shift-FFN
Venue: arXiv cs.CL 2025
Year: 2025

Recently, models such as OpenAI-o1 and DeepSeek-R1 have demonstrated remarkable performance on complex reasoning tasks through Long Chain-of-Thought (Long-CoT) reasoning. Although distilling this capability into student models significantly enhances their performance, this paper finds that fine-tuning LLMs with full parameters or LoRA with a low rank on long CoT data often leads to Cyclical Reasoning, where models repeatedly reiterate previous inference steps until the maximum length limit. Further analysis reveals that smaller differences in representations between adjacent tokens correlates with a higher tendency toward Cyclical Reasoning. To mitigate this issue, this paper proposes Shift Feedforward Networks (Shift-FFN), a novel approach that edits the current token's representation with the previous one before inputting it to FFN. This architecture dynamically amplifies the representation differences between adjacent tokens. Extensive experiments on multiple mathematical reasoning tasks demonstrate that LoRA combined with Shift-FFN achieves higher accuracy and a lower rate of Cyclical Reasoning across various data sizes compared to full fine-tuning and standard LoRA. Our data and code are available at https://anonymous.4open.science/r/Shift-FFN
DailyQA: A Benchmark to Evaluate Web Retrieval Augmented LLMs Based on Capturing Real-World Changes
Venue: arXiv cs.IR 2025
Year: 2025

We propose DailyQA, an automatically updated dynamic dataset that updates questions weekly and contains answers to questions on any given date. DailyQA utilizes daily updates from Wikipedia revision logs to implement a fully automated pipeline of data filtering, query generation synthesis, quality checking, answer extraction, and query classification. The benchmark requires large language models (LLMs) to process and answer questions involving fast-changing factual data and covering multiple domains. We evaluate several open-source and closed-source LLMs using different RAG pipelines with web search augmentation. We compare the ability of different models to process time-sensitive web information and find that rerank of web retrieval results is critical. Our results indicate that LLMs still face significant challenges in handling frequently updated information, suggesting that DailyQA benchmarking provides valuable insights into the direction of progress for LLMs and RAG systems.
ViDoRe Benchmark V2: Raising the Bar for Visual Retrieval
Venue: arXiv cs.IR 2025
Year: 2025

The ViDoRe Benchmark V1 was approaching saturation with top models exceeding 90% nDCG@5, limiting its ability to discern improvements. ViDoRe Benchmark V2 introduces realistic, challenging retrieval scenarios via blind contextual querying, long and cross-document queries, and a hybrid synthetic and human-in-the-loop query generation process. It comprises four diverse, multilingual datasets and provides clear evaluation instructions. Initial results demonstrate substantial room for advancement and highlight insights on model generalization and multilingual capability. This benchmark is designed as a living resource, inviting community contributions to maintain relevance through future evaluations.
Next Token Perception Score: Analytical Assessment of your LLM Perception Skills
Venue: arXiv cs.CL 2025
Year: 2025

Autoregressive pretraining has become the de facto paradigm for learning general-purpose representations in large language models (LLMs). However, linear probe performance across downstream perception tasks shows substantial variability, suggesting that features optimized for next-token prediction do not consistently transfer well to downstream perception tasks. We demonstrate that representations learned via autoregression capture features that may lie outside the subspaces most informative for perception. To quantify the (mis)alignment between autoregressive pretraining and downstream perception, we introduce the Next Token Perception Score (NTPS)-a score derived under a linear setting that measures the overlap between autoregressive and perception feature subspaces. This metric can be easily computed in closed form from pretrained representations and labeled data, and is proven to both upper- and lower-bound the excess loss. Empirically, we show that NTPS correlates strongly with linear probe accuracy across 12 diverse NLP datasets and eight pretrained models ranging from 270M to 8B parameters, confirming its utility as a measure of alignment. Furthermore, we show that NTPS increases following low-rank adaptation (LoRA) fine-tuning, especially in large models, suggesting that LoRA aligning representations to perception tasks enhances subspace overlap and thus improves downstream performance. More importantly, we find that NTPS reliably predicts the additional accuracy gains attained by LoRA finetuning thereby providing a lightweight prescreening tool for LoRA adaptation. Our results offer both theoretical insights and practical tools for analytically assessing LLM perception skills.
LengthLogD: A Length-Stratified Ensemble Framework for Enhanced Peptide Lipophilicity Prediction via Multi-Scale Feature Integration
Venue: arXiv cs.LG 2025
Year: 2025

Peptide compounds demonstrate considerable potential as therapeutic agents due to their high target affinity and low toxicity, yet their drug development is constrained by their low membrane permeability. Molecular weight and peptide length have significant effects on the logD of peptides, which in turn influences their ability to cross biological membranes. However, accurate prediction of peptide logD remains challenging due to the complex interplay between sequence, structure, and ionization states. This study introduces LengthLogD, a predictive framework that establishes specialized models through molecular length stratification while innovatively integrating multi-scale molecular representations. We constructed feature spaces across three hierarchical levels: atomic (10 molecular descriptors), structural (1024-bit Morgan fingerprints), and topological (3 graph-based features including Wiener index), optimized through stratified ensemble learning. An adaptive weight allocation mechanism specifically developed for long peptides significantly enhances model generalizability. Experimental results demonstrate superior performance across all categories: short peptides (R^2=0.855), medium peptides (R^2=0.816), and long peptides (R^2=0.882), with a 34.7% reduction in prediction error for long peptides compared to conventional single-model approaches. Ablation studies confirm: 1) The length-stratified strategy contributes 41.2% to performance improvement; 2) Topological features account for 28.5% of predictive importance. Compared to state-of-the-art models, our method maintains short peptide prediction accuracy while achieving a 25.7% increase in the coefficient of determination (R^2) for long peptides. This research provides a precise logD prediction tool for peptide drug development, particularly demonstrating unique value in optimizing long peptide lead compounds.