OpenRaiser/Intern-Atlas huggingface dataset:
Electronic Health Records-Based Data-Driven Diabetes Knowledge Unveiling and Risk Prognosis
Venue: arXiv cs.LG 2024
Year: 2024

In the healthcare sector, the application of deep learning technologies has revolutionized data analysis and disease forecasting. This is particularly evident in the field of diabetes, where the deep analysis of Electronic Health Records (EHR) has unlocked new opportunities for early detection and effective intervention strategies. Our research presents an innovative model that synergizes the capabilities of Bidirectional Long Short-Term Memory Networks-Conditional Random Field (BiLSTM-CRF) with a fusion of XGBoost and Logistic Regression. This model is designed to enhance the accuracy of diabetes risk prediction by conducting an in-depth analysis of electronic medical records data. The first phase of our approach involves employing BiLSTM-CRF to delve into the temporal characteristics and latent patterns present in EHR data. This method effectively uncovers the progression trends of diabetes, which are often hidden in the complex data structures of medical records. The second phase leverages the combined strength of XGBoost and Logistic Regression to classify these extracted features and evaluate associated risks. This dual approach facilitates a more nuanced and precise prediction of diabetes, outperforming traditional models, particularly in handling multifaceted and nonlinear medical datasets. Our research demonstrates a notable advancement in diabetes prediction over traditional methods, showcasing the effectiveness of our combined BiLSTM-CRF, XGBoost, and Logistic Regression model. This study highlights the value of data-driven strategies in clinical decision-making, equipping healthcare professionals with precise tools for early detection and intervention. By enabling personalized treatment and timely care, our approach signifies progress in incorporating advanced analytics in healthcare, potentially improving outcomes for diabetes and other chronic conditions.
Augmenting Minds or Automating Skills: The Differential Role of Human Capital in Generative AI's Impact on Creative Tasks
Venue: arXiv cs.HC 2024
Year: 2024

Generative AI is rapidly reshaping creative work, raising critical questions about its beneficiaries and societal implications. This study challenges prevailing assumptions by exploring how generative AI interacts with diverse forms of human capital in creative tasks. Through two random controlled experiments in flash fiction writing and song composition, we uncover a paradox: while AI democratizes access to creative tools, it simultaneously amplifies cognitive inequalities. Our findings reveal that AI enhances general human capital (cognitive abilities and education) by facilitating adaptability and idea integration but diminishes the value of domain-specific expertise. We introduce a novel theoretical framework that merges human capital theory with the automation-augmentation perspective, offering a nuanced understanding of human-AI collaboration. This framework elucidates how AI shifts the locus of creative advantage from specialized expertise to broader cognitive adaptability. Contrary to the notion of AI as a universal equalizer, our work highlights its potential to exacerbate disparities in skill valuation, reshaping workplace hierarchies and redefining the nature of creativity in the AI era. These insights advance theories of human capital and automation while providing actionable guidance for organizations navigating AI integration amidst workforce inequalities.
Exploring Fully Convolutional Networks for the Segmentation of Hyperspectral Imaging Applied to Advanced Driver Assistance Systems
Venue: arXiv cs.CV 2024
Year: 2024

Advanced Driver Assistance Systems (ADAS) are designed with the main purpose of increasing the safety and comfort of vehicle occupants. Most of current computer vision-based ADAS perform detection and tracking tasks quite successfully under regular conditions, but are not completely reliable, particularly under adverse weather and changing lighting conditions, neither in complex situations with many overlapping objects. In this work we explore the use of hyperspectral imaging (HSI) in ADAS on the assumption that the distinct near infrared (NIR) spectral reflectances of different materials can help to better separate the objects in a driving scene. In particular, this paper describes some experimental results of the application of fully convolutional networks (FCN) to the image segmentation of HSI for ADAS applications. More specifically, our aim is to investigate to what extent the spatial features codified by convolutional filters can be helpful to improve the performance of HSI segmentation systems. With that aim, we use the HSI-Drive v1.1 dataset, which provides a set of labelled images recorded in real driving conditions with a small-size snapshot NIR-HSI camera. Finally, we analyze the implementability of such a HSI segmentation system by prototyping the developed FCN model together with the necessary hyperspectral cube preprocessing stage and characterizing its performance on an MPSoC.
Relationship between misère NIM and two-player GOISHI HIROI
Venue: arXiv cs.GT 2024
Year: 2024

In combinatorial game theory, there are two famous winning conventions, normal play and misère play. Under normal play convention, the winner is the player who moves last and under misère play convention, the loser is the player who moves last. The difference makes these conventions completely different, and usually, games under misère play convention is much difficult to analyze than games under normal play convention. In this study, we show an interesting relationship between rulesets under different winning conventions; we can determine the winner of two-player GOISHI HIROI under normal play convention by using NIM under misère play convention. We also analyze two-player GOISHI HIROI under misère play convention.
Marco-LLM: Bridging Languages via Massive Multilingual Training for Cross-Lingual Enhancement
Venue: arXiv cs.CL 2024
Year: 2024

Large Language Models (LLMs) have achieved remarkable progress in recent years; however, their excellent performance is still largely limited to major world languages, primarily English. Many LLMs continue to face challenges with multilingual tasks, especially when it comes to low-resource languages. To address this issue, we introduced Marco-LLM: Massive multilingual training for cross-lingual enhancement LLM. We have collected a substantial amount of multilingual data for several low-resource languages and conducted extensive continual pre-training using the Qwen2 models. This effort has resulted in a multilingual LLM named Marco-LLM. Through comprehensive evaluations on various multilingual benchmarks, including MMMLU, AGIEval, Belebele, Flores-200, XCOPA and many others, Marco-LLM has demonstrated substantial improvements over state-of-the-art LLMs. Furthermore, Marco-LLM achieved substantial enhancements in any-to-any machine translation tasks, showing the effectiveness of our multilingual LLM. Marco-LLM is a pioneering multilingual LLM designed to not only perform exceptionally well in multilingual tasks, including low-resource languages, but also maintain strong performance in English and other major languages, closing the performance gap between high- and low-resource language capabilities. By bridging languages, this effort demonstrates our dedication to ensuring LLMs work accurately across various languages.
On Explicit Solutions to Fixed-Point Equations in Propositional Dynamic Logic
Venue: arXiv cs.LO 2024
Year: 2024

Propositional dynamic logic (PDL) is an important modal logic used to specify and reason about the behavior of software. A challenging problem in the context of PDL is solving fixed-point equations, i.e., formulae of the form $x \equiv ϕ(x)$ such that $x$ is a propositional variable and $ϕ(x)$ is a formula containing $x$. A solution to such an equation is a formula $ψ$ that omits $x$ and satisfies $ψ\equiv ϕ(ψ)$, where $ϕ(ψ)$ is obtained by replacing all occurrences of $x$ with $ψ$ in $ϕ(x)$. In this paper, we identify a novel class of PDL formulae arranged in two dual hierarchies for which every fixed-point equation $x \equiv ϕ(x)$ has a solution. Moreover, we not only prove the existence of solutions for all such equations, but also provide an explicit solution $ψ$ for each fixed-point equation.
Computing diverse pair of solutions for tractable SAT
Venue: arXiv cs.DS 2024
Year: 2024

In many decision-making processes, one may prefer multiple solutions to a single solution, which allows us to choose an appropriate solution from the set of promising solutions that are found by algorithms. Given this, finding a set of \emph{diverse} solutions plays an indispensable role in enhancing human decision-making. In this paper, we investigate the problem of finding diverse solutions of Satisfiability from the perspective of parameterized complexity with a particular focus on \emph{tractable} Boolean formulas. We present several parameterized tractable and intractable results for finding a diverse pair of satisfying assignments of a Boolean formula. In particular, we design an FPT algorithm for finding an ``almost disjoint'' pair of satisfying assignments of a $2$CNF formula.
M$^{3}$D: A Multimodal, Multilingual and Multitask Dataset for Grounded Document-level Information Extraction
Venue: arXiv cs.CL 2024
Year: 2024

Multimodal information extraction (IE) tasks have attracted increasing attention because many studies have shown that multimodal information benefits text information extraction. However, existing multimodal IE datasets mainly focus on sentence-level image-facilitated IE in English text, and pay little attention to video-based multimodal IE and fine-grained visual grounding. Therefore, in order to promote the development of multimodal IE, we constructed a multimodal multilingual multitask dataset, named M$^{3}$D, which has the following features: (1) It contains paired document-level text and video to enrich multimodal information; (2) It supports two widely-used languages, namely English and Chinese; (3) It includes more multimodal IE tasks such as entity recognition, entity chain extraction, relation extraction and visual grounding. In addition, our dataset introduces an unexplored theme, i.e., biography, enriching the domains of multimodal IE resources. To establish a benchmark for our dataset, we propose an innovative hierarchical multimodal IE model. This model effectively leverages and integrates multimodal information through a Denoised Feature Fusion Module (DFFM). Furthermore, in non-ideal scenarios, modal information is often incomplete. Thus, we designed a Missing Modality Construction Module (MMCM) to alleviate the issues caused by missing modalities. Our model achieved an average performance of 53.80% and 53.77% on four tasks in English and Chinese datasets, respectively, which set a reasonable standard for subsequent research. In addition, we conducted more analytical experiments to verify the effectiveness of our proposed module. We believe that our work can promote the development of the field of multimodal IE.
SocialMind: LLM-based Proactive AR Social Assistive System with Human-like Perception for In-situ Live Interactions
Venue: arXiv cs.AI 2024
Year: 2024

Social interactions are fundamental to human life. The recent emergence of large language models (LLMs)-based virtual assistants has demonstrated their potential to revolutionize human interactions and lifestyles. However, existing assistive systems mainly provide reactive services to individual users, rather than offering in-situ assistance during live social interactions with conversational partners. In this study, we introduce SocialMind, the first LLM-based proactive AR social assistive system that provides users with in-situ social assistance. SocialMind employs human-like perception leveraging multi-modal sensors to extract both verbal and nonverbal cues, social factors, and implicit personas, incorporating these social cues into LLM reasoning for social suggestion generation. Additionally, SocialMind employs a multi-tier collaborative generation strategy and proactive update mechanism to display social suggestions on Augmented Reality (AR) glasses, ensuring that suggestions are timely provided to users without disrupting the natural flow of conversation. Evaluations on three public datasets and a user study with 20 participants show that SocialMind achieves 38.3% higher engagement compared to baselines, and 95% of participants are willing to use SocialMind in their live social interactions.
Benchmarking and Enhancing Surgical Phase Recognition Models for Robotic-Assisted Esophagectomy
Venue: arXiv cs.CV 2024
Year: 2024

Robotic-assisted minimally invasive esophagectomy (RAMIE) is a recognized treatment for esophageal cancer, offering better patient outcomes compared to open surgery and traditional minimally invasive surgery. RAMIE is highly complex, spanning multiple anatomical areas and involving repetitive phases and non-sequential phase transitions. Our goal is to leverage deep learning for surgical phase recognition in RAMIE to provide intraoperative support to surgeons. To achieve this, we have developed a new surgical phase recognition dataset comprising 27 videos. Using this dataset, we conducted a comparative analysis of state-of-the-art surgical phase recognition models. To more effectively capture the temporal dynamics of this complex procedure, we developed a novel deep learning model featuring an encoder-decoder structure with causal hierarchical attention, which demonstrates superior performance compared to existing models.
ProtDAT: A Unified Framework for Protein Sequence Design from Any Protein Text Description
Venue: arXiv cs.AI 2024
Year: 2024

Protein design has become a critical method in advancing significant potential for various applications such as drug development and enzyme engineering. However, protein design methods utilizing large language models with solely pretraining and fine-tuning struggle to capture relationships in multi-modal protein data. To address this, we propose ProtDAT, a de novo fine-grained framework capable of designing proteins from any descriptive protein text input. ProtDAT builds upon the inherent characteristics of protein data to unify sequences and text as a cohesive whole rather than separate entities. It leverages an innovative multi-modal cross-attention, integrating protein sequences and textual information for a foundational level and seamless integration. Experimental results demonstrate that ProtDAT achieves the state-of-the-art performance in protein sequence generation, excelling in rationality, functionality, structural similarity, and validity. On 20,000 text-sequence pairs from Swiss-Prot, it improves pLDDT by 6%, TM-score by 0.26, and reduces RMSD by 1.2 Å, highlighting its potential to advance protein design.
Does your model understand genes? A benchmark of gene properties for biological and text models
Venue: arXiv cs.AI 2024
Year: 2024

The application of deep learning methods, particularly foundation models, in biological research has surged in recent years. These models can be text-based or trained on underlying biological data, especially omics data of various types. However, comparing the performance of these models consistently has proven to be a challenge due to differences in training data and downstream tasks. To tackle this problem, we developed an architecture-agnostic benchmarking approach that, instead of evaluating the models directly, leverages entity representation vectors from each model and trains simple predictive models for each benchmarking task. This ensures that all types of models are evaluated using the same input and output types. Here we focus on gene properties collected from professionally curated bioinformatics databases. These gene properties are categorized into five major groups: genomic properties, regulatory functions, localization, biological processes, and protein properties. Overall, we define hundreds of tasks based on these databases, which include binary, multi-label, and multi-class classification tasks. We apply these benchmark tasks to evaluate expression-based models, large language models, protein language models, DNA-based models, and traditional baselines. Our findings suggest that text-based models and protein language models generally outperform expression-based models in genomic properties and regulatory functions tasks, whereas expression-based models demonstrate superior performance in localization tasks. These results should aid in the development of more informed artificial intelligence strategies for biological understanding and therapeutic discovery. To ensure the reproducibility and transparency of our findings, we have made the source code and benchmark data publicly accessible for further investigation and expansion at github.com/BiomedSciAI/gene-benchmark.
BodyMetric: Evaluating the Realism of Human Bodies in Text-to-Image Generation
Venue: arXiv cs.CV 2024
Year: 2024

Accurately generating images of human bodies from text remains a challenging problem for state of the art text-to-image models. Commonly observed body-related artifacts include extra or missing limbs, unrealistic poses, blurred body parts, etc. Currently, evaluation of such artifacts relies heavily on time-consuming human judgments, limiting the ability to benchmark models at scale. We address this by proposing BodyMetric, a learnable metric that predicts body realism in images. BodyMetric is trained on realism labels and multi-modal signals including 3D body representations inferred from the input image, and textual descriptions. In order to facilitate this approach, we design an annotation pipeline to collect expert ratings on human body realism leading to a new dataset for this task, namely, BodyRealism. Ablation studies support our architectural choices for BodyMetric and the importance of leveraging a 3D human body prior in capturing body-related artifacts in 2D images. In comparison to concurrent metrics which evaluate general user preference in images, BodyMetric specifically reflects body-related artifacts. We demonstrate the utility of BodyMetric through applications that were previously infeasible at scale. In particular, we use BodyMetric to benchmark the generation ability of text-to-image models to produce realistic human bodies. We also demonstrate the effectiveness of BodyMetric in ranking generated images based on the predicted realism scores.
GEITje 7B Ultra: A Conversational Model for Dutch
Venue: arXiv cs.CL 2024
Year: 2024

Language models have rapidly evolved, predominantly focusing on English while often neglecting extensive pretraining in other languages. This approach has required initiatives to adapt powerful, English-centric models to other linguistic contexts through finetuning. For Dutch, such a recent endeavour is ``GEITje'' a model originally derived from the English-based Mistral 7B. Building on this fundamental work, the current research extends the capabilities of GEITje by supervised finetuning on newly created high-quality synthetic conversational datasets, along with an additional preference alignment procedure on a synthetic feedback dataset. Both the developed models and the created datasets are openly available.
Enhancing Mathematical Reasoning in LLMs with Background Operators
Venue: arXiv cs.AI 2024
Year: 2024

We propose utilizing background operators for mathematical reasoning in large language models (LLMs). To achieve this, we define a set of fundamental mathematical predicates as the basic building blocks. For each mathematical problem, we develop a Prolog solution that includes problem-specific predicates and intermediate predicates derived from these background operators, ensuring that each solution adheres to the defined operator set. We introduce the MATH-Prolog corpus, which is derived from the counting and probability categories of the MATH corpus. For efficient data augmentation, we apply K-fold cross-validated self-training. This method incrementally generates new Prolog solutions for each fold, incorporating those verified as correct into the training set throughout the model training process. Our experimental results demonstrate that 5-fold crossvalidated self-training effectively identifies new, accurate Prolog solutions, achieving an accuracy of 84.6% on the cross-validated set, and 84.8% on the test set during fine-tuning the Meta-Llama-3.1-8B-Instruct model. This approach successfully uncovers new solutions with fully computable inference steps for previously unseen problems. Additionally, incorporating the background mathematical predicates into the prompt enhances solution coverage.
CLINICSUM: Utilizing Language Models for Generating Clinical Summaries from Patient-Doctor Conversations
Venue: arXiv cs.CL 2024
Year: 2024

This paper presents ClinicSum, a novel framework designed to automatically generate clinical summaries from patient-doctor conversations. It utilizes a two-module architecture: a retrieval-based filtering module that extracts Subjective, Objective, Assessment, and Plan (SOAP) information from conversation transcripts, and an inference module powered by fine-tuned Pre-trained Language Models (PLMs), which leverage the extracted SOAP data to generate abstracted clinical summaries. To fine-tune the PLM, we created a training dataset of consisting 1,473 conversations-summaries pair by consolidating two publicly available datasets, FigShare and MTS-Dialog, with ground truth summaries validated by Subject Matter Experts (SMEs). ClinicSum's effectiveness is evaluated through both automatic metrics (e.g., ROUGE, BERTScore) and expert human assessments. Results show that ClinicSum outperforms state-of-the-art PLMs, demonstrating superior precision, recall, and F-1 scores in automatic evaluations and receiving high preference from SMEs in human assessment, making it a robust solution for automated clinical summarization.
SynFinTabs: A Dataset of Synthetic Financial Tables for Information and Table Extraction
Venue: arXiv cs.LG 2024
Year: 2024

Table extraction from document images is a challenging AI problem, and labelled data for many content domains is difficult to come by. Existing table extraction datasets often focus on scientific tables due to the vast amount of academic articles that are readily available, along with their source code. However, there are significant layout and typographical differences between tables found across scientific, financial, and other domains. Current datasets often lack the words, and their positions, contained within the tables, instead relying on unreliable OCR to extract these features for training modern machine learning models on natural language processing tasks. Therefore, there is a need for a more general method of obtaining labelled data. We present SynFinTabs, a large-scale, labelled dataset of synthetic financial tables. Our hope is that our method of generating these synthetic tables is transferable to other domains. To demonstrate the effectiveness of our dataset in training models to extract information from table images, we create FinTabQA, a layout large language model trained on an extractive question-answering task. We test our model using real-world financial tables and compare it to a state-of-the-art generative model and discuss the results. We make the dataset, model, and dataset generation code publicly available.