OpenRaiser/Intern-Atlas huggingface dataset:
Learning-based density-equalizing map
Venue: arXiv cs.GR 2025
Year: 2025

Density-equalizing map (DEM) serves as a powerful technique for creating shape deformations with the area changes reflecting an underlying density function. In recent decades, DEM has found widespread applications in fields such as data visualization, geometry processing, and medical imaging. Traditional approaches to DEM primarily rely on iterative numerical solvers for diffusion equations or optimization-based methods that minimize handcrafted energy functionals. However, these conventional techniques often face several challenges: they may suffer from limited accuracy, produce overlapping artifacts in extreme cases, and require substantial algorithmic redesign when extended from 2D to 3D, due to the derivative-dependent nature of their energy formulations. In this work, we propose a novel learning-based density-equalizing mapping framework (LDEM) using deep neural networks. Specifically, we introduce a loss function that enforces density uniformity and geometric regularity, and utilize a hierarchical approach to predict the transformations at both the coarse and dense levels. Our method demonstrates superior density-equalizing and bijectivity properties compared to prior methods for a wide range of simple and complex density distributions, and can be easily applied to surface remeshing with different effects. Also, it generalizes seamlessly from 2D to 3D domains without structural changes to the model architecture or loss formulation. Altogether, our work opens up new possibilities for scalable and robust computation of density-equalizing maps for practical applications.
The Effects of GitHub Copilot on Computing Students' Programming Effectiveness, Efficiency, and Processes in Brownfield Programming Tasks
Venue: arXiv cs.SE 2025
Year: 2025

When graduates of computing degree programs enter the software industry, they will most likely join teams working on legacy code bases developed by people other than themselves. In these so-called brownfield software development settings, generative artificial intelligence (GenAI) coding assistants like GitHub Copilot are rapidly transforming software development practices, yet the impact of GenAI on student programmers performing brownfield development tasks remains underexplored. This paper investigates how GitHub Copilot influences undergraduate students' programming performance, behaviors, and understanding when completing brownfield programming tasks in which they add new code to an unfamiliar code base. We conducted a controlled experiment in which 10 undergraduate computer science students completed highly similar brownfield development tasks with and without Copilot in a legacy web application. Using a mixed-methods approach combining performance analysis, behavioral analysis, and exit interviews, we found that students completed tasks 35% faster (p < 0.05) and made 50% more solution progress p (< 0.05) when using Copilot. Moreover, our analysis revealed that, when using Copilot, students spent 11% less time manually writing code (p < 0.05), and 12% less time conducting web searches (p < 0.05), providing evidence of a fundamental shift in how they engaged in programming. In exit interviews, students reported concerns about not understanding how or why Copilot suggestions work. This research suggests the need for computing educators to develop new pedagogical approaches that leverage GenAI assistants' benefits while fostering reflection on how and why GenAI suggestions address brownfield programming tasks. Complete study results and analysis are presented at https://ghcopilot-icer.github.io/.
DeepTraverse: A Depth-First Search Inspired Network for Algorithmic Visual Understanding
Venue: arXiv cs.CV 2025
Year: 2025

Conventional vision backbones, despite their success, often construct features through a largely uniform cascade of operations, offering limited explicit pathways for adaptive, iterative refinement. This raises a compelling question: can principles from classical search algorithms instill a more algorithmic, structured, and logical processing flow within these networks, leading to representations built through more interpretable, perhaps reasoning-like decision processes? We introduce DeepTraverse, a novel vision architecture directly inspired by algorithmic search strategies, enabling it to learn features through a process of systematic elucidation and adaptive refinement distinct from conventional approaches. DeepTraverse operationalizes this via two key synergistic components: recursive exploration modules that methodically deepen feature analysis along promising representational paths with parameter sharing for efficiency, and adaptive calibration modules that dynamically adjust feature salience based on evolving global context. The resulting algorithmic interplay allows DeepTraverse to intelligently construct and refine feature patterns. Comprehensive evaluations across a diverse suite of image classification benchmarks show that DeepTraverse achieves highly competitive classification accuracy and robust feature discrimination, often outperforming conventional models with similar or larger parameter counts. Our work demonstrates that integrating such algorithmic priors provides a principled and effective strategy for building more efficient, performant, and structured vision backbones.
Chat-of-Thought: Collaborative Multi-Agent System for Generating Domain Specific Information
Venue: arXiv cs.CL 2025
Year: 2025

This paper presents a novel multi-agent system called Chat-of-Thought, designed to facilitate the generation of Failure Modes and Effects Analysis (FMEA) documents for industrial assets. Chat-of-Thought employs multiple collaborative Large Language Model (LLM)-based agents with specific roles, leveraging advanced AI techniques and dynamic task routing to optimize the generation and validation of FMEA tables. A key innovation in this system is the introduction of a Chat of Thought, where dynamic, multi-persona-driven discussions enable iterative refinement of content. This research explores the application domain of industrial equipment monitoring, highlights key challenges, and demonstrates the potential of Chat-of-Thought in addressing these challenges through interactive, template-driven workflows and context-aware agent collaboration.
Optimizing Latent Dimension Allocation in Hierarchical VAEs: Balancing Attenuation and Information Retention for OOD Detection
Venue: arXiv cs.LG 2025
Year: 2025

Out-of-distribution (OOD) detection is a critical task in machine learning, particularly for safety-critical applications where unexpected inputs must be reliably flagged. While hierarchical variational autoencoders (HVAEs) offer improved representational capacity over traditional VAEs, their performance is highly sensitive to how latent dimensions are distributed across layers. Existing approaches often allocate latent capacity arbitrarily, leading to ineffective representations or posterior collapse. In this work, we introduce a theoretically grounded framework for optimizing latent dimension allocation in HVAEs, drawing on principles from information theory to formalize the trade-off between information loss and representational attenuation. We prove the existence of an optimal allocation ratio $r^{\ast}$ under a fixed latent budget, and empirically show that tuning this ratio consistently improves OOD detection performance across datasets and architectures. Our approach outperforms baseline HVAE configurations and provides practical guidance for principled latent structure design, leading to more robust OOD detection with deep generative models.
D-LiFT: Improving LLM-based Decompiler Backend via Code Quality-driven Fine-tuning
Venue: arXiv cs.CR 2025
Year: 2025

As one of the key tools in many security tasks, decompilers reconstruct human-readable source code from binaries. Yet, despite recent advances, their outputs often suffer from syntactic and semantic errors and remain difficult to read. Recently, with the advent of large language models (LLMs), researchers began to explore the potential of LLMs to refine decompiler output. Nevertheless, our study of these approaches reveals their problems, such as introducing new errors and relying on unreliable accuracy validation. In this paper, we present D-LIFT, an enhanced decompiler-LLM pipeline with a fine-tuned LLM using code quality-aware reinforcement learning. Unlike prior work that overlooks preserving accuracy, D-LIFT adheres to a key principle for enhancing the quality of decompiled code: preserving accuracy while improving readability. Central to D-LIFT, we propose D-Score, an integrated code quality assessment system to score the decompiled source code from multiple aspects, and use it to guide reinforcement learning fine-tuning and to select the best output during inference. In line with our principle, D-Score assigns low scores to any inaccurate output and only awards higher scores for readability to code that passes the accuracy check. Our implementation, based on Ghidra and a range of LLMs, demonstrates significant improvements for the accurate decompiled code from the coreutils and util-linux projects. Compared to baseline LLMs without D-Score-driven fine-tuning, our trained LLMs produce 55.3% more improved decompiled functions, as measured by D-Score. Overall, D-LIFT improves the quality of 68.2% of all the functions produced by the native decompiler.
Inference of Hierarchical Core-Periphery Structure in Temporal Networks
Venue: arXiv cs.SI 2025
Year: 2025

Networks can have various types of mesoscale structures. One type of mesoscale structure in networks is core-periphery structure, which consists of densely-connected core nodes and sparsely-connected peripheral nodes. The core nodes are connected densely to each other and can be connected to the peripheral nodes, which are connected sparsely to other nodes. There has been much research on core-periphery structure in time-independent networks, but few core-periphery detection methods have been developed for time-dependent (i.e., ``temporal") networks. Using a multilayer-network representation of temporal networks and an inference approach that employs stochastic block models, we generalize a recent method for detecting hierarchical core-periphery structure \cite{Polanco23} from time-independent networks to temporal networks. In contrast to ``onion-like'' nested core-periphery structures (where each node is assigned to a group according to how deeply it is nested in a network's core), hierarchical core-periphery structures encompass networks with nested structures, tree-like structures (where any two groups must either be disjoint or have one as a strict subset of the other), and general non-nested mesoscale structures (where the group assignments of nodes do not have to be nested in any way). To perform statistical inference and thereby identify core-periphery structure, we use a Markov-chain Monte Carlo (MCMC) approach. We illustrate our method for detecting hierarchical core-periphery structure in two real-world temporal networks, and we briefly discuss the structures that we identify in these networks.
Survival Analysis as Imprecise Classification with Trainable Kernels
Venue: arXiv cs.LG 2025
Year: 2025

Survival analysis is a fundamental tool for modeling time-to-event data in healthcare, engineering, and finance, where censored observations pose significant challenges. While traditional methods like the Beran estimator offer nonparametric solutions, they often struggle with the complex data structures and heavy censoring. This paper introduces three novel survival models, iSurvM (the imprecise Survival model based on Mean likelihood functions), iSurvQ (the imprecise Survival model based on the Quantiles of likelihood functions), and iSurvJ (the imprecise Survival model based on the Joint learning), that combine imprecise probability theory with attention mechanisms to handle censored data without parametric assumptions. The first idea behind the models is to represent censored observations by interval-valued probability distributions for each instance over time intervals between events moments. The second idea is to employ the kernel-based Nadaraya-Watson regression with trainable attention weights for computing the imprecise probability distribution over time intervals for the entire dataset. The third idea is to consider three decision strategies for training, which correspond to the proposed three models. Experiments on synthetic and real datasets demonstrate that the proposed models, especially iSurvJ, consistently outperform the Beran estimator from the accuracy and computational complexity points of view. Codes implementing the proposed models are publicly available.
When Large Language Models are Reliable for Judging Empathic Communication
Venue: arXiv cs.CL 2025
Year: 2025

Large language models (LLMs) excel at generating empathic responses in text-based conversations. But, how reliably do they judge the nuances of empathic communication? We investigate this question by comparing how experts, crowdworkers, and LLMs annotate empathic communication across four evaluative frameworks drawn from psychology, natural language processing, and communications applied to 200 real-world conversations where one speaker shares a personal problem and the other offers support. Drawing on 3,150 expert annotations, 2,844 crowd annotations, and 3,150 LLM annotations, we assess inter-rater reliability between these three annotator groups. We find that expert agreement is high but varies across the frameworks' sub-components depending on their clarity, complexity, and subjectivity. We show that expert agreement offers a more informative benchmark for contextualizing LLM performance than standard classification metrics. Across all four frameworks, LLMs consistently approach this expert level benchmark and exceed the reliability of crowdworkers. These results demonstrate how LLMs, when validated on specific tasks with appropriate benchmarks, can support transparency and oversight in emotionally sensitive applications including their use as conversational companions.
Measuring Corporate Human Capital Disclosures: Lexicon, Data, Code, and Research Opportunities
Venue: arXiv cs.CL 2025
Year: 2025

Human capital (HC) is increasingly important to corporate value creation. Unlike other assets, however, HC is not currently subject to well-defined measurement or disclosure rules. We use a machine learning algorithm (word2vec) trained on a confirmed set of HC disclosures to develop a comprehensive list of HC-related keywords classified into five subcategories (DEI; health and safety; labor relations and culture; compensation and benefits; and demographics and other) that capture the multidimensional nature of HC management. We share our lexicon, corporate HC disclosures, and the Python code used to develop the lexicon, and we provide detailed examples of using our data and code, including for fine-tuning a BERT model. Researchers can use our HC lexicon (or modify the code to capture another construct of interest) with their samples of corporate communications to address pertinent HC questions. We close with a discussion of future research opportunities related to HC management and disclosure.
Can LLMs Generate Good Stories? Insights and Challenges from a Narrative Planning Perspective
Venue: arXiv cs.CL 2025
Year: 2025

Story generation has been a prominent application of Large Language Models (LLMs). However, understanding LLMs' ability to produce high-quality stories remains limited due to challenges in automatic evaluation methods and the high cost and subjectivity of manual evaluation. Computational narratology offers valuable insights into what constitutes a good story, which has been applied in the symbolic narrative planning approach to story generation. This work aims to deepen the understanding of LLMs' story generation capabilities by using them to solve narrative planning problems. We present a benchmark for evaluating LLMs on narrative planning based on literature examples, focusing on causal soundness, character intentionality, and dramatic conflict. Our experiments show that GPT-4 tier LLMs can generate causally sound stories at small scales, but planning with character intentionality and dramatic conflict remains challenging, requiring LLMs trained with reinforcement learning for complex reasoning. The results offer insights on the scale of stories that LLMs can generate while maintaining quality from different aspects. Our findings also highlight interesting problem solving behaviors and shed lights on challenges and considerations for applying LLM narrative planning in game environments.
The 2025 PNPL Competition: Speech Detection and Phoneme Classification in the LibriBrain Dataset
Venue: arXiv cs.LG 2025
Year: 2025

The advance of speech decoding from non-invasive brain data holds the potential for profound societal impact. Among its most promising applications is the restoration of communication to paralysed individuals affected by speech deficits such as dysarthria, without the need for high-risk surgical interventions. The ultimate aim of the 2025 PNPL competition is to produce the conditions for an "ImageNet moment" or breakthrough in non-invasive neural decoding, by harnessing the collective power of the machine learning community. To facilitate this vision we present the largest within-subject MEG dataset recorded to date (LibriBrain) together with a user-friendly Python library (pnpl) for easy data access and integration with deep learning frameworks. For the competition we define two foundational tasks (i.e. Speech Detection and Phoneme Classification from brain data), complete with standardised data splits and evaluation metrics, illustrative benchmark models, online tutorial code, a community discussion board, and public leaderboard for submissions. To promote accessibility and participation the competition features a Standard track that emphasises algorithmic innovation, as well as an Extended track that is expected to reward larger-scale computing, accelerating progress toward a non-invasive brain-computer interface for speech.
Exploring EEG Responses during Observation of Actions Performed by Human Actor and Humanoid Robot
Venue: arXiv cs.CE 2025
Year: 2025

Action observation (AO) therapy is a promising rehabilitative treatment for motor and language function in individuals recovering from neurological conditions, such as stroke. This pilot study aimed to investigate the potential of humanoid robots to support AO therapy in rehabilitation settings. The brain activity of three healthy right-handed participants was monitored with electroencephalography (EEG) while they observed eight different actions performed by two agents, a human actor and a robot, using their left and right arms. Their event-related spectral perturbations (ERSPs, changes in the spectral power of neural oscillations in response to an event or stimulus, compared to baseline) in sensorimotor regions were analyzed. The single-subject analysis showed variability in ERSP patterns among all participants, including power suppression in sensorimotor mu and beta rhythms. One participant showed stronger responses to "robot" AO conditions than to "human" conditions. Strong and positive correlations in ERSP across all conditions were observed for almost all participants and channels, implying common cognitive processes or neural networks at play in the mirror neuron system during AO. The results support the feasibility of using EEG to explore differences in neural responses to observation of robot- and human-induced actions.
Q2E: Query-to-Event Decomposition for Zero-Shot Multilingual Text-to-Video Retrieval
Venue: arXiv cs.CL 2025
Year: 2025

Recent approaches have shown impressive proficiency in extracting and leveraging parametric knowledge from Large-Language Models (LLMs) and Vision-Language Models (VLMs). In this work, we consider how we can improve the identification and retrieval of videos related to complex real-world events by automatically extracting latent parametric knowledge about those events. We present Q2E: a Query-to-Event decomposition method for zero-shot multilingual text-to-video retrieval, adaptable across datasets, domains, LLMs, or VLMs. Our approach demonstrates that we can enhance the understanding of otherwise overly simplified human queries by decomposing the query using the knowledge embedded in LLMs and VLMs. We additionally show how to apply our approach to both visual and speech-based inputs. To combine this varied multimodal knowledge, we adopt entropy-based fusion scoring for zero-shot fusion. Through evaluations on two diverse datasets and multiple retrieval metrics, we demonstrate that Q2E outperforms several state-of-the-art baselines. Our evaluation also shows that integrating audio information can significantly improve text-to-video retrieval. We have released code and data for future research.
Fine-Grained control over Music Generation with Activation Steering
Venue: arXiv cs.SD 2025
Year: 2025

We present a method for fine-grained control over music generation through inference-time interventions on an autoregressive generative music transformer called MusicGen. Our approach enables timbre transfer, style transfer, and genre fusion by steering the residual stream using weights of linear probes trained on it, or by steering the attention layer activations in a similar manner. We observe that modelling this as a regression task provides improved performance, hypothesizing that the mean-squared-error better preserve meaningful directional information in the activation space. Combined with the global conditioning offered by text prompts in MusicGen, our method provides both global and local control over music generation. Audio samples illustrating our method are available at our demo page.
Playing in the Sandbox: A Study on the Usability of Seccomp
Venue: arXiv cs.OS 2025
Year: 2025

Sandboxing restricts what applications do, and prevents exploited processes being abused; yet relatively few applications get sandboxed: why? We report a usability trial with 7 experienced Seccomp developers exploring how they approached sandboxing an application and the difficulties they faced. The developers each approached sandboxing the application differently and each came to different solutions. We highlight many challenges of using Seccomp, the sandboxing designs by the participants, and what developers think would make it easier for them to sandbox applications effectively.
A Unified Framework for Probabilistic Dynamic-, Trajectory- and Vision-based Virtual Fixtures
Venue: arXiv cs.RO 2025
Year: 2025

Probabilistic Virtual Fixtures (VFs) enable the adaptive selection of the most suitable haptic feedback for each phase of a task, based on learned or perceived uncertainty. While keeping the human in the loop remains essential, for instance, to ensure high precision, partial automation of certain task phases is critical for productivity. We present a unified framework for probabilistic VFs that seamlessly switches between manual fixtures, semi-automated fixtures (with the human handling precise tasks), and full autonomy. We introduce a novel probabilistic Dynamical System-based VF for coarse guidance, enabling the robot to autonomously complete certain task phases while keeping the human operator in the loop. For tasks requiring precise guidance, we extend probabilistic position-based trajectory fixtures with automation allowing for seamless human interaction as well as geometry-awareness and optimal impedance gains. For manual tasks requiring very precise guidance, we also extend visual servoing fixtures with the same geometry-awareness and impedance behavior. We validate our approach experimentally on different robots, showcasing multiple operation modes and the ease of programming fixtures.