OpenRaiser/Intern-Atlas huggingface dataset:
X-Diffusion: Training Diffusion Policies on Cross-Embodiment Human Demonstrations
Venue: arXiv cs.RO 2025
Year: 2025

Human videos can be recorded quickly and at scale, making them an appealing source of training data for robot learning. However, humans and robots differ fundamentally in embodiment, resulting in mismatched action execution. Direct kinematic retargeting of human hand motion can therefore produce actions that are physically infeasible for robots. Despite these low-level differences, human demonstrations provide valuable motion cues about how to manipulate and interact with objects. Our key idea is to exploit the forward diffusion process: as noise is added to actions, low-level execution differences fade while high-level task guidance is preserved. We present X-Diffusion, a principled framework for training diffusion policies that maximally leverages human data without learning dynamically infeasible motions. X-Diffusion first trains a classifier to predict whether a noisy action is executed by a human or robot. Then, a human action is incorporated into policy training only after adding sufficient noise such that the classifier cannot discern its embodiment. Actions consistent with robot execution supervise fine-grained denoising at low noise levels, while mismatched human actions provide only coarse guidance at higher noise levels. Our experiments show that naive co-training under execution mismatches degrades policy performance, while X-Diffusion consistently improves it. Across five manipulation tasks, X-Diffusion achieves a 16% higher average success rate than the best baseline. The project website is available at https://portal-cornell.github.io/X-Diffusion/.
AI-Powered Citation Auditing: A Zero-Assumption Protocol for Systematic Reference Verification in Academic Research
Venue: arXiv cs.DL 2025
Year: 2025

Academic citation integrity faces persistent challenges, with research indicating 20% of citations contain errors and manual verification requiring months of expert time. This paper presents a novel AI-powered methodology for systematic, comprehensive reference auditing using agentic AI with tool-use capabilities. We develop a zero-assumption verification protocol that independently validates every reference against multiple academic databases (Semantic Scholar, Google Scholar, CrossRef) without assuming any citation is correct. The methodology was validated across 30 academic documents (2,581 references) spanning undergraduate projects to doctoral theses and peer-reviewed publications. Results demonstrate 91.7% average verification rate on published PLOS papers, with successful detection of fabricated references, retracted articles, orphan citations, and predatory journals. Time efficiency improved dramatically: 90-minute audits for 916-reference doctoral theses versus months of manual review. The system achieved <0.5% false positive rate while identifying critical issues manual review might miss. This work establishes the first validated AI-agent methodology for academic citation integrity, demonstrating practical applicability for supervisors, students, and institutional quality assurance.
A hybrid solution approach for the Integrated Healthcare Timetabling Competition 2024
Venue: arXiv cs.AI 2025
Year: 2025

We report about the algorithm, implementation and results submitted to the Integrated Healthcare Timetabling Competition 2024 by Team Twente, which scored third in the competition. Our approach combines mixed-integer programming, constraint programming and simulated annealing in a 3-phase solution approach based on decomposition into subproblems. Next to describing our approach and describing our design decisions, we share our insights and, for the first time, lower bounds on the optimal solution values for the benchmark instances. We finally highlight open problems for which we think that addressing them could improve our approach even further.
GEMMA-SQL: A Novel Text-to-SQL Model Based on Large Language Models
Venue: arXiv cs.CL 2025
Year: 2025

Text-to-SQL systems enable users to interact with structured databases using natural language, eliminating the need for specialized programming knowledge. In this work, we introduce GEMMA-SQL, a lightweight and efficient text-to-SQL model built upon the open-source Gemma 2B architecture. Unlike many large language models (LLMs), GEMMA-SQL is fine-tuned in a resource-efficient, iterative manner and can be deployed on low-cost hardware. Leveraging the SPIDER benchmark for training and evaluation, GEMMA-SQL combines multiple prompting strategies, including few-shot learning, to enhance SQL query generation accuracy. The instruction-tuned variant, GEMMA-SQL Instruct, achieves 66.8% Test-Suite accuracy and 63.3% Exact Set Match accuracy, outperforming several state-of-the-art baselines such as IRNet, RYANSQL, and CodeXDavinci. The proposed approach demonstrates that effective prompt design and targeted instruction tuning can significantly boost performance while maintaining high scalability and adaptability. These results position GEMMA-SQL as a practical, open-source alternative for robust and accessible text-to-SQL systems.
P-MIA: A Profiled-Based Membership Inference Attack on Cognitive Diagnosis Models
Venue: arXiv cs.CR 2025
Year: 2025

Cognitive diagnosis models (CDMs) are pivotal for creating fine-grained learner profiles in modern intelligent education platforms. However, these models are trained on sensitive student data, raising significant privacy concerns. While membership inference attacks (MIA) have been studied in various domains, their application to CDMs remains a critical research gap, leaving their privacy risks unquantified. This paper is the first to systematically investigate MIA against CDMs. We introduce a novel and realistic grey box threat model that exploits the explainability features of these platforms, where a model's internal knowledge state vectors are exposed to users through visualizations such as radar charts. We demonstrate that these vectors can be accurately reverse-engineered from such visualizations, creating a potent attack surface. Based on this threat model, we propose a profile-based MIA (P-MIA) framework that leverages both the model's final prediction probabilities and the exposed internal knowledge state vectors as features. Extensive experiments on three real-world datasets against mainstream CDMs show that our grey-box attack significantly outperforms standard black-box baselines. Furthermore, we showcase the utility of P-MIA as an auditing tool by successfully evaluating the efficacy of machine unlearning techniques and revealing their limitations.
Learning to reason about rare diseases through retrieval-augmented agents
Venue: arXiv cs.CL 2025
Year: 2025

Rare diseases represent the long tail of medical imaging, where AI models often fail due to the scarcity of representative training data. In clinical workflows, radiologists frequently consult case reports and literature when confronted with unfamiliar findings. Following this line of reasoning, we introduce RADAR, Retrieval Augmented Diagnostic Reasoning Agents, an agentic system for rare disease detection in brain MRI. Our approach uses AI agents with access to external medical knowledge by embedding both case reports and literature using sentence transformers and indexing them with FAISS to enable efficient similarity search. The agent retrieves clinically relevant evidence to guide diagnostic decision making on unseen diseases, without the need of additional training. Designed as a model-agnostic reasoning module, RADAR can be seamlessly integrated with diverse large language models, consistently improving their rare pathology recognition and interpretability. On the NOVA dataset comprising 280 distinct rare diseases, RADAR achieves up to a 10.2% performance gain, with the strongest improvements observed for open source models such as DeepSeek. Beyond accuracy, the retrieved examples provide interpretable, literature grounded explanations, highlighting retrieval-augmented reasoning as a powerful paradigm for low-prevalence conditions in medical imaging.
Temporal convolutional and fusional transformer model with Bi-LSTM encoder-decoder for multi-time-window remaining useful life prediction
Venue: arXiv cs.LG 2025
Year: 2025

Health prediction is crucial for ensuring reliability, minimizing downtime, and optimizing maintenance in industrial systems. Remaining Useful Life (RUL) prediction is a key component of this process; however, many existing models struggle to capture fine-grained temporal dependencies while dynamically prioritizing critical features across time for robust prognostics. To address these challenges, we propose a novel framework that integrates Temporal Convolutional Networks (TCNs) for localized temporal feature extraction with a modified Temporal Fusion Transformer (TFT) enhanced by Bi-LSTM encoder-decoder. This architecture effectively bridges short- and long-term dependencies while emphasizing salient temporal patterns. Furthermore, the incorporation of a multi-time-window methodology improves adaptability across diverse operating conditions. Extensive evaluations on benchmark datasets demonstrate that the proposed model reduces the average RMSE by up to 5.5%, underscoring its improved predictive accuracy compared to state-of-the-art methods. By closing critical gaps in current approaches, this framework advances the effectiveness of industrial prognostic systems and highlights the potential of advanced time-series transformers for RUL prediction.
IndicVisionBench: Benchmarking Cultural and Multilingual Understanding in VLMs
Venue: arXiv cs.CV 2025
Year: 2025

Vision-language models (VLMs) have demonstrated impressive generalization across multimodal tasks, yet most evaluation benchmarks remain Western-centric, leaving open questions about their performance in culturally diverse and multilingual settings. To address this gap, we introduce IndicVisionBench, the first large-scale benchmark centered on the Indian subcontinent. Covering English and 10 Indian languages, our benchmark spans 3 multimodal tasks, including Optical Character Recognition (OCR), Multimodal Machine Translation (MMT), and Visual Question Answering (VQA), covering 6 kinds of question types. Our final benchmark consists of a total of ~5K images and 37K+ QA pairs across 13 culturally grounded topics. In addition, we release a paired parallel corpus of annotations across 10 Indic languages, creating a unique resource for analyzing cultural and linguistic biases in VLMs. We evaluate a broad spectrum of 8 models, from proprietary closed-source systems to open-weights medium and large-scale models. Our experiments reveal substantial performance gaps, underscoring the limitations of current VLMs in culturally diverse contexts. By centering cultural diversity and multilinguality, IndicVisionBench establishes a reproducible evaluation framework that paves the way for more inclusive multimodal research.
Trustworthiness Calibration Framework for Phishing Email Detection Using Large Language Models
Venue: arXiv cs.CR 2025
Year: 2025

Phishing emails continue to pose a persistent challenge to online communication, exploiting human trust and evading automated filters through realistic language and adaptive tactics. While large language models (LLMs) such as GPT-4 and LLaMA-3-8B achieve strong accuracy in text classification, their deployment in security systems requires assessing reliability beyond benchmark performance. To address this, this study introduces the Trustworthiness Calibration Framework (TCF), a reproducible methodology for evaluating phishing detectors across three dimensions: calibration, consistency, and robustness. These components are integrated into a bounded index, the Trustworthiness Calibration Index (TCI), and complemented by the Cross-Dataset Stability (CDS) metric that quantifies stability of trustworthiness across datasets. Experiments conducted on five corpora, such as SecureMail 2025, Phishing Validation 2024, CSDMC2010, Enron-Spam, and Nazario, using DeBERTa-v3-base, LLaMA-3-8B, and GPT-4 demonstrate that GPT-4 achieves the strongest overall trust profile, followed by LLaMA-3-8B and DeBERTa-v3-base. Statistical analysis confirms that reliability varies independently of raw accuracy, underscoring the importance of trust-aware evaluation for real-world deployment. The proposed framework establishes a transparent and reproducible foundation for assessing model dependability in LLM-based phishing detection.
EMO100DB: An Open Dataset of Improvised Songs with Emotion Data
Venue: arXiv cs.SD 2025
Year: 2025

In this study, we introduce Emo100DB: a dataset consisting of improvised songs that were recorded and transcribed with emotion data based on Russell's circumplex model of emotion. The dataset was developed by collecting improvised songs that consist of melody, lyrics, and an instrumental accompaniment played, sung, and recorded by 20 young adults. Before recording each song, the participants were asked to report their emotional state, with the axes representing arousal and valence based on Russell's circumplex model of emotions. The dataset is organized into four emotion quadrants, and it includes the lyrics text and MIDI file of the melody extracted from the participant recordings, along with the original audio in WAV format. By providing an integrated composition of data and analysis, this study aims to offer a comprehensive dataset that allows for a diverse exploration of the relationship between music and emotion.
Causal Structure and Representation Learning with Biomedical Applications
Venue: arXiv cs.LG 2025
Year: 2025

Massive data collection holds the promise of a better understanding of complex phenomena and, ultimately, better decisions. Representation learning has become a key driver of deep learning applications, as it allows learning latent spaces that capture important properties of the data without requiring any supervised annotations. Although representation learning has been hugely successful in predictive tasks, it can fail miserably in causal tasks including predicting the effect of a perturbation/intervention. This calls for a marriage between representation learning and causal inference. An exciting opportunity in this regard stems from the growing availability of multi-modal data (observational and perturbational, imaging-based and sequencing-based, at the single-cell level, tissue-level, and organism-level). We outline a statistical and computational framework for causal structure and representation learning motivated by fundamental biomedical questions: how to effectively use observational and perturbational data to perform causal discovery on observed causal variables; how to use multi-modal views of the system to learn causal variables; and how to design optimal perturbations.
Unified Multimodal Diffusion Forcing for Forceful Manipulation
Venue: arXiv cs.RO 2025
Year: 2025

Given a dataset of expert trajectories, standard imitation learning approaches typically learn a direct mapping from observations (e.g., RGB images) to actions. However, such methods often overlook the rich interplay between different modalities, i.e., sensory inputs, actions, and rewards, which is crucial for modeling robot behavior and understanding task outcomes. In this work, we propose Multimodal Diffusion Forcing, a unified framework for learning from multimodal robot trajectories that extends beyond action generation. Rather than modeling a fixed distribution, MDF applies random partial masking and trains a diffusion model to reconstruct the trajectory. This training objective encourages the model to learn temporal and cross-modal dependencies, such as predicting the effects of actions on force signals or inferring states from partial observations. We evaluate MDF on contact-rich, forceful manipulation tasks in simulated and real-world environments. Our results show that MDF not only delivers versatile functionalities, but also achieves strong performance, and robustness under noisy observations. More visualizations can be found on our website https://unified-df.github.io
A Standardized Benchmark for Multilabel Antimicrobial Peptide Classification
Venue: arXiv cs.LG 2025
Year: 2025

Antimicrobial peptides have emerged as promising molecules to combat antimicrobial resistance. However, fragmented datasets, inconsistent annotations, and the lack of standardized benchmarks hinder computational approaches and slow down the discovery of new candidates. To address these challenges, we present the Expanded Standardized Collection for Antimicrobial Peptide Evaluation (ESCAPE), an experimental framework integrating over 80.000 peptides from 27 validated repositories. Our dataset separates antimicrobial peptides from negative sequences and incorporates their functional annotations into a biologically coherent multilabel hierarchy, capturing activities across antibacterial, antifungal, antiviral, and antiparasitic classes. Building on ESCAPE, we propose a transformer-based model that leverages sequence and structural information to predict multiple functional activities of peptides. Our method achieves up to a 2.56% relative average improvement in mean Average Precision over the second-best method adapted for this task, establishing a new state-of-the-art multilabel peptide classification. ESCAPE provides a comprehensive and reproducible evaluation framework to advance AI-driven antimicrobial peptide research.
Design Exploration for Protection and Cleaning of Solar Panels with Case Studies for Space Missions
Venue: arXiv cs.RO 2025
Year: 2025

Solar energy is used for many mission-critical applications including space exploration, sensor systems to monitor wildfires, etc. Their operation can be limited or even terminated if solar panels are covered with dust or hit by space debris. To address this issue, we designed panel cleaning mechanisms and tested protective materials. For cleaning mechanisms, we designed and compared a wiper system and a rail system. For protective materials, we found through collision tests that polycarbonate was very promising, though the most important factor was layering a soft material between the panel's surface and a hard material. In the cleaning system comparisons, the wiper-based system was more efficient than the rail-based system in terms of cost, cleaning speed, and total power consumption.
Sublinear iterations can suffice even for DDPMs
Venue: arXiv cs.LG 2025
Year: 2025

SDE-based methods such as denoising diffusion probabilistic models (DDPMs) have shown remarkable success in real-world sample generation tasks. Prior analyses of DDPMs have been focused on the exponential Euler discretization, showing guarantees that generally depend at least linearly on the dimension or initial Fisher information. Inspired by works in log-concave sampling (Shen and Lee, 2019), we analyze an integrator -- the denoising diffusion randomized midpoint method (DDRaM) -- that leverages an additional randomized midpoint to better approximate the SDE. Using a recently-developed analytic framework called the "shifted composition rule", we show that this algorithm enjoys favorable discretization properties under appropriate smoothness assumptions, with sublinear $\widetilde{O}(\sqrt{d})$ score evaluations needed to ensure convergence. This is the first sublinear complexity bound for pure DDPM sampling -- prior works which obtained such bounds worked instead with ODE-based sampling and had to make modifications to the sampler which deviate from how they are used in practice. We also provide experimental validation of the advantages of our method, showing that it performs well in practice with pre-trained image synthesis models.
Marionette: Data Structure Description and Management for Heterogeneous Computing
Venue: arXiv cs.DC 2025
Year: 2025

Adapting large, object-oriented C++ codebases for hardware acceleration might be extremely challenging, particularly when targeting heterogeneous platforms such as GPUs. Marionette is a C++17 library designed to address this by enabling flexible, efficient, and portable data structure definitions. It decouples data layout from the description of the interface, supports multiple memory management strategies, and provides efficient data transfers and conversions across devices, all of this with minimal runtime overhead due to the compile-time nature of its abstractions. By allowing interfaces to be augmented with arbitrary functions, Marionette maintains compatibility with existing code and offers a streamlined interface that supports both straightforward and advanced use cases. This paper outlines its design, usage, and performance, including a CUDA-based case study demonstrating its efficiency and flexibility.
Epistemic Reject Option Prediction
Venue: arXiv cs.AI 2025
Year: 2025

In high-stakes applications, predictive models must not only produce accurate predictions but also quantify and communicate their uncertainty. Reject-option prediction addresses this by allowing the model to abstain when prediction uncertainty is high. Traditional reject-option approaches focus solely on aleatoric uncertainty, an assumption valid only when large training data makes the epistemic uncertainty negligible. However, in many practical scenarios, limited data makes this assumption unrealistic. This paper introduces the epistemic reject-option predictor, which abstains in regions of high epistemic uncertainty caused by insufficient data. Building on Bayesian learning, we redefine the optimal predictor as the one that minimizes expected regret -- the performance gap between the learned model and the Bayes-optimal predictor with full knowledge of the data distribution. The model abstains when the regret for a given input exceeds a specified rejection cost. To our knowledge, this is the first principled framework that enables learning predictors capable of identifying inputs for which the training data is insufficient to make reliable decisions.
Clinical-ComBAT: a diffusion-weighted MRI harmonization method for clinical applications
Venue: arXiv cs.CV 2025
Year: 2025

Diffusion-weighted magnetic resonance imaging (DW-MRI) derived scalar maps are effective for assessing neurodegenerative diseases and microstructural properties of white matter in large number of brain conditions. However, DW-MRI inherently limits the combination of data from multiple acquisition sites without harmonization to mitigate scanner-specific biases. While the widely used ComBAT method reduces site effects in research, its reliance on linear covariate relationships, homogeneous populations, fixed site numbers, and well populated sites constrains its clinical use. To overcome these limitations, we propose Clinical-ComBAT, a method designed for real-world clinical scenarios. Clinical-ComBAT harmonizes each site independently, enabling flexibility as new data and clinics are introduced. It incorporates a non-linear polynomial data model, site-specific harmonization referenced to a normative site, and variance priors adaptable to small cohorts. It further includes hyperparameter tuning and a goodness-of-fit metric for harmonization assessment. We demonstrate its effectiveness on simulated and real data, showing improved alignment of diffusion metrics and enhanced applicability for normative modeling.