OpenRaiser/Intern-Atlas huggingface dataset:
Deep Learning of Continuous and Structured Policies for Aggregated Heterogeneous Treatment Effects
Venue: arXiv cs.LG 2025
Year: 2025

As estimation of Heterogeneous Treatment Effect (HTE) is increasingly adopted across a wide range of scientific and industrial applications, the treatment action space can naturally expand, from a binary treatment variable to a structured treatment policy. This policy may include several policy factors such as a continuous treatment intensity variable, or discrete treatment assignments. From first principles, we derive the formulation for incorporating multiple treatment policy variables into the functional forms of individual and average treatment effects. Building on this, we develop a methodology to directly rank subjects using aggregated HTE functions. In particular, we construct a Neural-Augmented Naive Bayes layer within a deep learning framework to incorporate an arbitrary number of factors that satisfies the Naive Bayes assumption. The factored layer is then applied with continuous treatment variables, treatment assignment, and direct ranking of aggregated treatment effect functions. Together, these algorithms build towards a generic framework for deep learning of heterogeneous treatment policies, and we show their power to improve performance with public datasets.
Architecting Clinical Collaboration: Multi-Agent Reasoning Systems for Multimodal Medical VQA
Venue: arXiv cs.AI 2025
Year: 2025

Dermatological care via telemedicine often lacks the rich context of in-person visits. Clinicians must make diagnoses based on a handful of images and brief descriptions, without the benefit of physical exams, second opinions, or reference materials. While many medical AI systems attempt to bridge these gaps with domain-specific fine-tuning, this work hypothesized that mimicking clinical reasoning processes could offer a more effective path forward. This study tested seven vision-language models on medical visual question answering across six configurations: baseline models, fine-tuned variants, and both augmented with either reasoning layers that combine multiple model perspectives, analogous to peer consultation, or retrieval-augmented generation that incorporates medical literature at inference time, serving a role similar to reference-checking. While fine-tuning degraded performance in four of seven models with an average 30% decrease, baseline models collapsed on test data. Clinical-inspired architectures, meanwhile, achieved up to 70% accuracy, maintaining performance on unseen data while generating explainable, literature-grounded outputs critical for clinical adoption. These findings demonstrate that medical AI succeeds by reconstructing the collaborative and evidence-based practices fundamental to clinical diagnosis.
PAPRLE (Plug-And-Play Robotic Limb Environment): A Modular Ecosystem for Robotic Limbs
Venue: arXiv cs.RO 2025
Year: 2025

We introduce PAPRLE (Plug-And-Play Robotic Limb Environment), a modular ecosystem that enables flexible placement and control of robotic limbs. With PAPRLE, a user can change the arrangement of the robotic limbs, and control them using a variety of input devices, including puppeteers, gaming controllers, and VR-based interfaces. This versatility supports a wide range of teleoperation scenarios and promotes adaptability to different task requirements. To further enhance configurability, we introduce a pluggable puppeteer device that can be easily mounted and adapted to match the target robot configurations. PAPRLE supports bilateral teleoperation through these puppeteer devices, agnostic to the type or configuration of the follower robot. By supporting both joint-space and task-space control, the system provides real-time force feedback, improving user fidelity and physical interaction awareness. The modular design of PAPRLE facilitates novel spatial arrangements of the limbs and enables scalable data collection, thereby advancing research in embodied AI and learning-based control. We validate PAPRLE in various real-world settings, demonstrating its versatility across diverse combinations of leader devices and follower robots. The system will be released as open source, including both hardware and software components, to support broader adoption and community-driven extension. Additional resources and demonstrations are available at the project website: https://uiuckimlab.github.io/paprle-pages
An Optimal Algorithm for Shortest Paths in Unweighted Disk Graphs
Venue: arXiv cs.CG 2025
Year: 2025

Given in the plane a set $S$ of $n$ points and a set of disks centered at these points, the disk graph $G(S)$ induced by these disks has vertex set $S$ and an edge between two vertices if their disks intersect. Note that the disks may have different radii. We consider the problem of computing shortest paths from a source point $s\in S$ to all vertices in $G(S)$ where the length of a path in $G(S)$ is defined as the number of edges in the path. The previously best algorithm solves the problem in $O(n\log^2 n)$ time. A lower bound of $Ω(n\log n)$ is also known for this problem under the algebraic decision tree model. In this paper, we present an $O(n\log n)$ time algorithm, which matches the lower bound and thus is optimal. Another virtue of our algorithm is that it is quite simple.
MLlm-DR: Towards Explainable Depression Recognition with MultiModal Large Language Models
Venue: arXiv cs.AI 2025
Year: 2025

Automated depression diagnosis aims to analyze multimodal information from interview videos to predict participants' depression scores. Previous studies often lack clear explanations of how these scores were determined, limiting their adoption in clinical practice. While the advent of LLMs provides a possible pathway for explainable depression diagnosis, current LLMs capable of processing multimodal data lack training on interview data, resulting in poor diagnostic performance when used directly. In this paper, we propose a novel multimodal large language model (MLlm-DR) that can understand multimodal information inputs and supports explainable depression diagnosis. MLlm-DR integrates a smaller LLMs and a lightweight query module (LQ-former). Specifically, the smaller LLMs is designed to generate depression scores and corresponding evaluation rationales. To enhance its logical reasoning for domain-specific tasks while maintaining practicality, we constructed a robust training dataset to fine-tune it. Meanwhile, the LQ-former captures depression-related features from speech and visual data, aiding the model's ability to process multimodal information, to achieve comprehensive depression diagnosis. Our approach achieves state-of-the-art results on two interview-based benchmark datasets, CMDC and E-DAIC-WOZ, demonstrating its effectiveness and superiority.
StoryGrid: A Tangible Interface for Student Expression
Venue: arXiv cs.HC 2025
Year: 2025

StorySpace is a classroom-based design and presentation system for interactive multimedia posters. Employing the technology base first used in Eden's PITAboard [2002], StorySpace allows groups of learners to manipulate projected multimedia objects on a horizontal board using a small collection of shared physical tokens. In this paper, we present the ongoing design history of StorySpace in the context of its introduction within an urban high school literature class. Interface modifications based on student and teacher feedback led on changes in token semantics and media importing methods. We describe how StorySpace features enriched students' interpretations of literature, with particular emphasis in two areas: (1) attention to audience, and (2) reflection of multiple perspectives.
Hapster: Using Apple Watch Haptics to Enable Live Low-Friction Student Feedback in the Physical Classroom
Venue: arXiv cs.HC 2025
Year: 2025

The benefits of student response systems (SRSs) for in-person lectures are well-researched. However, all current SRSs only rely on a visual interface to relay information to the instructor. We describe the design and evaluation of Hapster, a prototype system that uses an Apple Watch to deliver live, aggregated student feedback to the instructor via both visual and vibro-tactile modalities. We evaluated this system with 6 instructors and 155 students at a U.S. university. Participants reported that the system was effective at delivering live student feedback and facilitating better engagement from both the instructor and the students. However, instructors also noted several challenges with differentiating and perceiving the haptic sequences while lecturing. We conclude by discussing the tradeoff between system flexibility and abuse potential while identifying opportunities for further research regarding accessibility, content moderation, and additional interaction modalities. Our results suggest that haptics can be used as an effective live feedback mechanism for instructors in the physical classroom.
How Not to Detect Prompt Injections with an LLM
Venue: arXiv cs.CR 2025
Year: 2025

LLM-integrated applications and agents are vulnerable to prompt injection attacks, where adversaries embed malicious instructions within seemingly benign input data to manipulate the LLM's intended behavior. Recent defenses based on known-answer detection (KAD) scheme have reported near-perfect performance by observing an LLM's output to classify input data as clean or contaminated. KAD attempts to repurpose the very susceptibility to prompt injection as a defensive mechanism. We formally characterize the KAD scheme and uncover a structural vulnerability that invalidates its core security premise. To exploit this fundamental vulnerability, we methodically design an adaptive attack, DataFlip. It consistently evades KAD defenses, achieving detection rates as low as $0\%$ while reliably inducing malicious behavior with a success rate of $91\%$, all without requiring white-box access to the LLM or any optimization procedures.
OFFSET: Segmentation-based Focus Shift Revision for Composed Image Retrieval
Venue: arXiv cs.CV 2025
Year: 2025

Composed Image Retrieval (CIR) represents a novel retrieval paradigm that is capable of expressing users' intricate retrieval requirements flexibly. It enables the user to give a multimodal query, comprising a reference image and a modification text, and subsequently retrieve the target image. Notwithstanding the considerable advances made by prevailing methodologies, CIR remains in its nascent stages due to two limitations: 1) inhomogeneity between dominant and noisy portions in visual data is ignored, leading to query feature degradation, and 2) the priority of textual data in the image modification process is overlooked, which leads to a visual focus bias. To address these two limitations, this work presents a focus mapping-based feature extractor, which consists of two modules: dominant portion segmentation and dual focus mapping. It is designed to identify significant dominant portions in images and guide the extraction of visual and textual data features, thereby reducing the impact of noise interference. Subsequently, we propose a textually guided focus revision module, which can utilize the modification requirements implied in the text to perform adaptive focus revision on the reference image, thereby enhancing the perception of the modification focus on the composed features. The aforementioned modules collectively constitute the segmentatiOn-based Focus shiFt reviSion nETwork (\mbox{OFFSET}), and comprehensive experiments on four benchmark datasets substantiate the superiority of our proposed method. The codes and data are available on https://zivchen-ty.github.io/OFFSET.github.io/
Graph Learning
Venue: arXiv cs.LG 2025
Year: 2025

Graph learning has rapidly evolved into a critical subfield of machine learning and artificial intelligence (AI). Its development began with early graph-theoretic methods, gaining significant momentum with the advent of graph neural networks (GNNs). Over the past decade, progress in scalable architectures, dynamic graph modeling, multimodal learning, generative AI, explainable AI (XAI), and responsible AI has broadened the applicability of graph learning to various challenging environments. Graph learning is significant due to its ability to model complex, non-Euclidean relationships that traditional machine learning struggles to capture, thus better supporting real-world applications ranging from drug discovery and fraud detection to recommender systems and scientific reasoning. However, challenges like scalability, generalization, heterogeneity, interpretability, and trustworthiness must be addressed to unlock its full potential. This survey provides a comprehensive introduction to graph learning, focusing on key dimensions including scalable, temporal, multimodal, generative, explainable, and responsible graph learning. We review state-of-the-art techniques for efficiently handling large-scale graphs, capturing dynamic temporal dependencies, integrating heterogeneous data modalities, generating novel graph samples, and enhancing interpretability to foster trust and transparency. We also explore ethical considerations, such as privacy and fairness, to ensure responsible deployment of graph learning models. Additionally, we identify and discuss emerging topics, highlighting recent integration of graph learning and other AI paradigms and offering insights into future directions. This survey serves as a valuable resource for researchers and practitioners seeking to navigate the rapidly evolving landscape of graph learning.
MCNP-GO: A python package for assembling MCNP input files with a systems engineering approach
Venue: arXiv cs.CE 2025
Year: 2025

This article introduces MCNP-GO (https://github.com/afriou/mcnpgo), a Python package designed to manipulate and assemble MCNP input files, allowing users to assemble a set of independent objects, each described by a valid MCNP file, into a single cohesive file. This tool is particularly useful for applications where precise modeling and positioning of equipment are crucial. The package addresses the challenges of managing large databases of MCNP input files, ensuring reliability and traceability through configuration management systems. MCNP-GO provides functionalities such as renumbering, extracting subsets of files, transforming files, and assembling files while managing collisions and materials. It also keeps track of the operations performed on files, enhancing traceability and ease of modification. The article demonstrates the package's capabilities through a practical example of assembling an MCNP input file for a tomographic experiment, highlighting its efficiency and user-friendliness. MCNP-GO is designed for users with minimal Python knowledge.
TuneShield: Mitigating Toxicity in Conversational AI while Fine-tuning on Untrusted Data
Venue: arXiv cs.CR 2025
Year: 2025

Recent advances in foundation models, such as LLMs, have revolutionized conversational AI. Chatbots are increasingly being developed by customizing LLMs on specific conversational datasets. However, mitigating toxicity during this customization, especially when dealing with untrusted training data, remains a significant challenge. To address this, we introduce TuneShield, a defense framework designed to mitigate toxicity during chatbot fine-tuning while preserving conversational quality. TuneShield leverages LLM-based toxicity classification, utilizing the instruction-following capabilities and safety alignment of LLMs to effectively identify toxic samples, outperforming industry API services. TuneShield generates synthetic conversation samples, termed 'healing data', based on the identified toxic samples, using them to mitigate toxicity while reinforcing desirable behavior during fine-tuning. It performs an alignment process to further nudge the chatbot towards producing desired responses. Our findings show that TuneShield effectively mitigates toxicity injection attacks while preserving conversational quality, even when the toxicity classifiers are imperfect or biased. TuneShield proves to be resilient against adaptive adversarial and jailbreak attacks. Additionally, TuneShield demonstrates effectiveness in mitigating adaptive toxicity injection attacks during dialog-based learning (DBL).
Modeling and Reversing Brain Lesions Using Diffusion Models
Venue: arXiv cs.CV 2025
Year: 2025

Brain lesions are abnormalities or injuries in brain tissue that are often detectable using magnetic resonance imaging (MRI), which reveals structural changes in the affected areas. This broad definition of brain lesions includes areas of the brain that are irreversibly damaged, as well as areas of brain tissue that are deformed as a result of lesion growth or swelling. Despite the importance of differentiating between damaged and deformed tissue, existing lesion segmentation methods overlook this distinction, labeling both of them as a single anomaly. In this work, we introduce a diffusion model-based framework for analyzing and reversing the brain lesion process. Our pipeline first segments abnormal regions in the brain, then estimates and reverses tissue deformations by restoring displaced tissue to its original position, isolating the core lesion area representing the initial damage. Finally, we inpaint the core lesion area to arrive at an estimation of the pre-lesion healthy brain. This proposed framework reverses a forward lesion growth process model that is well-established in biomechanical studies that model brain lesions. Our results demonstrate improved accuracy in lesion segmentation, characterization, and brain labeling compared to traditional methods, offering a robust tool for clinical and research applications in brain lesion analysis. Since pre-lesion healthy versions of abnormal brains are not available in any public dataset for validation of the reverse process, we simulate a forward model to synthesize multiple lesioned brain images.
MedGen: Unlocking Medical Video Generation by Scaling Granularly-annotated Medical Videos
Venue: arXiv cs.CV 2025
Year: 2025

Recent advances in video generation have shown remarkable progress in open-domain settings, yet medical video generation remains largely underexplored. Medical videos are critical for applications such as clinical training, education, and simulation, requiring not only high visual fidelity but also strict medical accuracy. However, current models often produce unrealistic or erroneous content when applied to medical prompts, largely due to the lack of large-scale, high-quality datasets tailored to the medical domain. To address this gap, we introduce MedVideoCap-55K, the first large-scale, diverse, and caption-rich dataset for medical video generation. It comprises over 55,000 curated clips spanning real-world medical scenarios, providing a strong foundation for training generalist medical video generation models. Built upon this dataset, we develop MedGen, which achieves leading performance among open-source models and rivals commercial systems across multiple benchmarks in both visual quality and medical accuracy. We hope our dataset and model can serve as a valuable resource and help catalyze further research in medical video generation. Our code and data is available at https://github.com/FreedomIntelligence/MedGen
DRO-EDL-MPC: Evidential Deep Learning-Based Distributionally Robust Model Predictive Control for Safe Autonomous Driving
Venue: arXiv cs.RO 2025
Year: 2025

Safety is a critical concern in motion planning for autonomous vehicles. Modern autonomous vehicles rely on neural network-based perception, but making control decisions based on these inference results poses significant safety risks due to inherent uncertainties. To address this challenge, we present a distributionally robust optimization (DRO) framework that accounts for both aleatoric and epistemic perception uncertainties using evidential deep learning (EDL). Our approach introduces a novel ambiguity set formulation based on evidential distributions that dynamically adjusts the conservativeness according to perception confidence levels. We integrate this uncertainty-aware constraint into model predictive control (MPC), proposing the DRO-EDL-MPC algorithm with computational tractability for autonomous driving applications. Validation in the CARLA simulator demonstrates that our approach maintains efficiency under high perception confidence while enforcing conservative constraints under low confidence.
HIRAG: Hierarchical-Thought Instruction-Tuning Retrieval-Augmented Generation
Venue: arXiv cs.CL 2025
Year: 2025

Retrieval-augmented generation (RAG) has become a fundamental paradigm for addressing the challenges faced by large language models in handling real-time information and domain-specific problems. Traditional RAG systems primarily rely on the in-context learning (ICL) capabilities of the large language model itself. Still, in-depth research on the specific capabilities needed by the RAG generation model is lacking, leading to challenges with inconsistent document quality and retrieval system imperfections. Even the limited studies that fine-tune RAG generative models often \textit{lack a granular focus on RAG task} or \textit{a deeper utilization of chain-of-thought processes}. To address this, we propose that RAG models should possess three progressively hierarchical abilities (1) Filtering: the ability to select relevant information; (2) Combination: the ability to combine semantic information across paragraphs; and (3) RAG-specific reasoning: the ability to further process external knowledge using internal knowledge. Thus, we introduce our new RAG instruction fine-tuning method, Hierarchical-Thought Instruction-Tuning Retrieval-Augmented Generation (HIRAG) incorporates a "think before answering" strategy. This method enhances the model's open-book examination capability by utilizing multi-level progressive chain-of-thought. Experiments show that the HIRAG training strategy significantly improves the model's performance on datasets such as RGB, PopQA, MuSiQue, HotpotQA, and PubmedQA.
A Satellite-Ground Synergistic Large Vision-Language Model System for Earth Observation
Venue: arXiv cs.NI 2025
Year: 2025

Recently, large vision-language models (LVLMs) unleash powerful analysis capabilities for low Earth orbit (LEO) satellite Earth observation images in the data center. However, fast satellite motion, brief satellite-ground station (GS) contact windows, and large size of the images pose a data download challenge. To enable near real-time Earth observation applications (e.g., disaster and extreme weather monitoring), we should explore how to deploy LVLM in LEO satellite networks, and design SpaceVerse, an efficient satellite-ground synergistic LVLM inference system. To this end, firstly, we deploy compact LVLMs on satellites for lightweight tasks, whereas regular LVLMs operate on GSs to handle computationally intensive tasks. Then, we propose a computing and communication co-design framework comprised of a progressive confidence network and an attention-based multi-scale preprocessing, used to identify on-satellite inferring data, and reduce data redundancy before satellite-GS transmission, separately. We implement and evaluate SpaceVerse on real-world LEO satellite constellations and datasets, achieving a 31.2% average gain in accuracy and a 51.2% reduction in latency compared to state-of-the-art baselines.