OpenRaiser/Intern-Atlas huggingface dataset:
HARE: an entity and relation centric evaluation framework for histopathology reports
Venue: arXiv cs.CL 2025
Year: 2025

Medical domain automated text generation is an active area of research and development; however, evaluating the clinical quality of generated reports remains a challenge, especially in instances where domain-specific metrics are lacking, e.g. histopathology. We propose HARE (Histopathology Automated Report Evaluation), a novel entity and relation centric framework, composed of a benchmark dataset, a named entity recognition (NER) model, a relation extraction (RE) model, and a novel metric, which prioritizes clinically relevant content by aligning critical histopathology entities and relations between reference and generated reports. To develop the HARE benchmark, we annotated 813 de-identified clinical diagnostic histopathology reports and 652 histopathology reports from The Cancer Genome Atlas (TCGA) with domain-specific entities and relations. We fine-tuned GatorTronS, a domain-adapted language model to develop HARE-NER and HARE-RE which achieved the highest overall F1-score (0.915) among the tested models. The proposed HARE metric outperformed traditional metrics including ROUGE and Meteor, as well as radiology metrics such as RadGraph-XL, with the highest correlation and the best regression to expert evaluations (higher than the second best method, GREEN, a large language model based radiology report evaluator, by Pearson $r = 0.168$, Spearman $ρ= 0.161$, Kendall $τ= 0.123$, $R^2 = 0.176$, $RMSE = 0.018$). We release HARE, datasets, and the models at https://github.com/knowlab/HARE to foster advancements in histopathology report generation, providing a robust framework for improving the quality of reports.
Secure Confidential Business Information When Sharing Machine Learning Models
Venue: arXiv cs.CR 2025
Year: 2025

Model-sharing offers significant business value by enabling firms with well-established Machine Learning (ML) models to monetize and share their models with others who lack the resources to develop ML models from scratch. However, concerns over data confidentiality remain a significant barrier to model-sharing adoption, as Confidential Property Inference (CPI) attacks can exploit shared ML models to uncover confidential properties of the model provider's private model training data. Existing defenses often assume that CPI attacks are non-adaptive to the specific ML model they are targeting. This assumption overlooks a key characteristic of real-world adversaries: their responsiveness, i.e., adversaries' ability to dynamically adjust their attack models based on the information of the target and its defenses. To overcome this limitation, we propose a novel defense method that explicitly accounts for the responsive nature of real-world adversaries via two methodological innovations: a novel Responsive CPI attack and an attack-defense arms race framework. The former emulates the responsive behaviors of adversaries in the real world, and the latter iteratively enhances both the target and attack models, ultimately producing a secure ML model that is robust against responsive CPI attacks. Furthermore, we propose and integrate a novel approximate strategy into our defense, which addresses a critical computational bottleneck of defense methods and improves defense efficiency. Through extensive empirical evaluations across various realistic model-sharing scenarios, we demonstrate that our method outperforms existing defenses by more effectively defending against CPI attacks, preserving ML model utility, and reducing computational overhead.
Tactile-Based Human Intent Recognition for Robot Assistive Navigation
Venue: arXiv cs.RO 2025
Year: 2025

Robot assistive navigation (RAN) is critical for enhancing the mobility and independence of the growing population of mobility-impaired individuals. However, existing systems often rely on interfaces that fail to replicate the intuitive and efficient physical communication observed between a person and a human caregiver, limiting their effectiveness. In this paper, we introduce Tac-Nav, a RAN system that leverages a cylindrical tactile skin mounted on a Stretch 3 mobile manipulator to provide a more natural and efficient interface for human navigational intent recognition. To robustly classify the tactile data, we developed the Cylindrical Kernel Support Vector Machine (CK-SVM), an algorithm that explicitly models the sensor's cylindrical geometry and is consequently robust to the natural rotational shifts present in a user's grasp. Comprehensive experiments were conducted to demonstrate the effectiveness of our classification algorithm and the overall system. Results show that CK-SVM achieved superior classification accuracy on both simulated (97.1%) and real-world (90.8%) datasets compared to four baseline models. Furthermore, a pilot study confirmed that users more preferred the Tac-Nav tactile interface over conventional joystick and voice-based controls.
Pico: A Modular Framework for Hypothesis-Driven Small Language Model Research
Venue: arXiv cs.CL 2025
Year: 2025

Building language models (LMs), especially small and medium ones, remains more art than science. While large LMs often improve by sheer scale, it is still unclear why many design choices work. For small LMs, this uncertainty is more limiting: tight parameter budgets make each decision critical, yet researchers still lack systematic, scientific ways to test and refine new ideas. We introduce Pico, a lightweight, modular framework that enables systematic, hypothesis-driven research for small and medium-scale language model development. Pico consists of two libraries that together provide a practical sandbox where researchers can make targeted changes to a model's architecture or training procedures and directly observe their effects on the model's behavior. To support reproducible experimentation, we also release a suite of baseline models, pico-decoder, trained under standardized conditions and open-sourced for the community. Case studies highlight how Pico can support iterative small LM design and analysis.
LenslessMic: Audio Encryption and Authentication via Lensless Computational Imaging
Venue: arXiv cs.CR 2025
Year: 2025

With society's increasing reliance on digital data sharing, the protection of sensitive information has become critical. Encryption serves as one of the privacy-preserving methods; however, its realization in the audio domain predominantly relies on signal processing or software methods embedded into hardware. In this paper, we introduce LenslessMic, a hybrid optical hardware-based encryption method that utilizes a lensless camera as a physical layer of security applicable to multiple types of audio. We show that LenslessMic enables (1) robust authentication of audio recordings and (2) encryption strength that can rival the search space of 256-bit digital standards, while maintaining high-quality signals and minimal loss of content information. The approach is validated with a low-cost Raspberry Pi prototype and is open-sourced together with datasets to facilitate research in the area.
Evaluating CxG Generalisation in LLMs via Construction-Based NLI Fine Tuning
Venue: arXiv cs.CL 2025
Year: 2025

We probe large language models' ability to learn deep form-meaning mappings as defined by construction grammars. We introduce the ConTest-NLI benchmark of 80k sentences covering eight English constructions from highly lexicalized to highly schematic. Our pipeline generates diverse synthetic NLI triples via templating and the application of a model-in-the-loop filter. This provides aspects of human validation to ensure challenge and label reliability. Zero-shot tests on leading LLMs reveal a 24% drop in accuracy between naturalistic (88%) and adversarial data (64%), with schematic patterns proving hardest. Fine-tuning on a subset of ConTest-NLI yields up to 9% improvement, yet our results highlight persistent abstraction gaps in current LLMs and offer a scalable framework for evaluating construction-informed learning.
Improved mmFormer for Liver Fibrosis Staging via Missing-Modality Compensation
Venue: arXiv cs.CV 2025
Year: 2025

In real-world clinical settings, magnetic resonance imaging (MRI) frequently suffers from missing modalities due to equipment variability or patient cooperation issues, which can significantly affect model performance. To address this issue, we propose a multimodal MRI classification model based on the mmFormer architecture with an adaptive module for handling arbitrary combinations of missing modalities. Specifically, this model retains the hybrid modality-specific encoders and the modality-correlated encoder from mmFormer to extract consistent lesion features across available modalities. In addition, we integrate a missing-modality compensation module which leverages zero-padding, modality availability masks, and a Delta Function with learnable statistical parameters to dynamically synthesize proxy features for recovering missing information. To further improve prediction performance, we adopt a cross-validation ensemble strategy by training multiple models on different folds and applying soft voting during inference. This method is evaluated on the test set of Comprehensive Analysis & Computing of REal-world medical images (CARE) 2025 challenge, targeting the Liver Fibrosis Staging (LiFS) task based on non-contrast dynamic MRI scans including T1-weighted imaging (T1WI), T2-weighted imaging (T2WI), and diffusion-weighted imaging (DWI). For Cirrhosis Detection and Substantial Fibrosis Detection on in-distribution vendors, our model obtains accuracies of 66.67%, and 74.17%, and corresponding area under the curve (AUC) scores of 71.73% and 68.48%, respectively.
Robot Conga: A Leader-Follower Walking Approach to Sequential Path Following in Multi-Agent Systems
Venue: arXiv cs.RO 2025
Year: 2025

Coordinated path following in multi-agent systems is a key challenge in robotics, with applications in automated logistics, surveillance, and collaborative exploration. Traditional formation control techniques often rely on time-parameterized trajectories and path integrals, which can result in synchronization issues and rigid behavior. In this work, we address the problem of sequential path following, where agents maintain fixed spatial separation along a common trajectory, guided by a leader under centralized control. We introduce Robot Conga, a leader-follower control strategy that updates each agent's desired state based on the leader's spatial displacement rather than time, assuming access to a global position reference, an assumption valid in indoor environments equipped with motion capture, vision-based tracking, or UWB localization systems. The algorithm was validated in simulation using both TurtleBot3 and quadruped (Laikago) robots. Results demonstrate accurate trajectory tracking, stable inter-agent spacing, and fast convergence, with all agents aligning within 250 time steps (approx. 0.25 seconds) in the quadruped case, and almost instantaneously in the TurtleBot3 implementation.
The Oracle Has Spoken: A Multi-Aspect Evaluation of Dialogue in Pythia
Venue: arXiv cs.CL 2025
Year: 2025

Dialogue is one of the landmark abilities of large language models (LLMs). Despite its ubiquity, few studies actually distinguish specific ingredients underpinning dialogue behavior emerging during post-training. We employ a comprehensive suite of model-based metrics, each targeting a distinct fine-grained aspect of dialogue, motivated by linguistic theory. We evaluate how the performance of pre-trained Pythia models changes with respect to each of those dimensions, depending on model size and as a result of supervised fine-tuning on conversational datasets. We observe only a mild impact of raw model size on most metrics, whereas fine-tuning quickly saturates the scores for all but the smallest models tested. Somewhat contrary to our expectations, many metrics show very similar trends, especially if they are all rooted in the same evaluator model, which raises the question of their reliability in measuring a specific dimension. To that end, we conduct additional analyses of score distributions, metric correlations, and term frequencies in generated responses to help explain our observations.
PrediPrune: Reducing Verification Overhead in Souper with Machine Learning Driven Pruning
Venue: arXiv cs.ET 2025
Year: 2025

Souper is a powerful enumerative superoptimizer that enhances the runtime performance of programs by optimizing LLVM intermediate representation (IR) code. However, its verification process, which relies on a computationally expensive SMT solver to validate optimization candidates, must explore a large search space. This large search space makes the verification process particularly expensive, increasing the burden to incorporate Souper into compilation tools. We propose PrediPrune, a stochastic candidate pruning strategy that effectively reduces the number of invalid candidates passed to the SMT solver. By utilizing machine learning techniques to predict the validity of candidates based on features extracted from the code, PrediPrune prunes unlikely candidates early, decreasing the verification workload. When combined with the state-of-the-art approach (Dataflow), PrediPrune decreases compilation time by 51% compared to the Baseline and by 12% compared to using only Dataflow, emphasizing the effectiveness of the combined approach that integrates a purely ML-based method (PrediPrune) with a purely non-ML based (Dataflow) method. Additionally, PrediPrune offers a flexible interface to trade-off compilation time and optimization opportunities, allowing end users to adjust the balance according to their needs.
GRIL: Knowledge Graph Retrieval-Integrated Learning with Large Language Models
Venue: arXiv cs.LG 2025
Year: 2025

Retrieval-Augmented Generation (RAG) has significantly mitigated the hallucinations of Large Language Models (LLMs) by grounding the generation with external knowledge. Recent extensions of RAG to graph-based retrieval offer a promising direction, leveraging the structural knowledge for multi-hop reasoning. However, existing graph RAG typically decouples retrieval and reasoning processes, which prevents the retriever from adapting to the reasoning needs of the LLM. They also struggle with scalability when performing multi-hop expansion over large-scale graphs, or depend heavily on annotated ground-truth entities, which are often unavailable in open-domain settings. To address these challenges, we propose a novel graph retriever trained end-to-end with LLM, which features an attention-based growing and pruning mechanism, adaptively navigating multi-hop relevant entities while filtering out noise. Within the extracted subgraph, structural knowledge and semantic features are encoded via soft tokens and the verbalized graph, respectively, which are infused into the LLM together, thereby enhancing its reasoning capability and facilitating interactive joint training of the graph retriever and the LLM reasoner. Experimental results across three QA benchmarks show that our approach consistently achieves state-of-the-art performance, validating the strength of joint graph-LLM optimization for complex reasoning tasks. Notably, our framework eliminates the need for predefined ground-truth entities by directly optimizing the retriever using LLM logits as implicit feedback, making it especially effective in open-domain settings.
sat-QFL: Secure Quantum Federated Learning for Low Orbit Satellites
Venue: arXiv cs.DC 2025
Year: 2025

Low Earth orbit (LEO) constellations violate core assumptions of standard (quantum) federated learning (FL): client-server connectivity is intermittent, participation is time varying, and latency budgets are strict. We present sat-QFL, a hierarchical, access aware quantum federated learning (QFL) framework that partitions satellites into primary (ground connected) and secondary as inter-satellite links (ISL-only) roles, and schedules sequential, simultaneous, or asynchronous edge training aligned with visibility windows. For quantum-resilient confidentiality and integrity, sat-QFL integrates quantum key distribution (QKD) based key establishment with authenticated encryption for model exchange; we also assess teleportation as a feasibility primitive for quantum state transfer. Using derived constellation traces and QFL workloads (Qiskit), we show that sat-QFL sustains robust aggregation under varying participation and reduces communication bottlenecks with modest security overhead. Our implementation and results are available at https://github.com/s222416822/satQFL.
PM25Vision: A Large-Scale Benchmark Dataset for Visual Estimation of Air Quality
Venue: arXiv cs.CV 2025
Year: 2025

We introduce PM25Vision (PM25V), the largest and most comprehensive dataset to date for estimating air quality - specifically PM2.5 concentrations - from street-level images. The dataset contains over 11,114 images matched with timestamped and geolocated PM2.5 readings across 3,261 AQI monitoring stations and 11 years, significantly exceeding the scale of previous benchmarks. The spatial accuracy of this dataset has reached 5 kilometers, far exceeding the city-level accuracy of many datasets. We describe the data collection, synchronization, and cleaning pipelines, and provide baseline model performances using CNN and transformer architectures. Our dataset is publicly available.
Captioning for Text-Video Retrieval via Dual-Group Direct Preference Optimization
Venue: arXiv cs.CV 2025
Year: 2025

In text-video retrieval, auxiliary captions are often used to enhance video understanding, bridging the gap between the modalities. While recent advances in multi-modal large language models (MLLMs) have enabled strong zero-shot caption generation, we observe that such captions tend to be generic and indistinguishable across visually similar videos, limiting their utility for fine-grained retrieval. Moreover, conventional captioning approaches are typically evaluated using language generation metrics, such as BLEU, which are not typically tailored for retrieval tasks that require making discriminative distinctions between candidates. To address this, we propose $\textbf{CaRe-DPO}$, a retrieval framework that directly optimizes caption generation using retrieval relevance scores. At its core is Dual-Group Direct Preference Optimization (DG-DPO), a novel learning strategy that supervises captioning by modeling preferences across groups of distinct video and caption pairs. In addition, we present an MLLM-based retrieval model that incorporates role-embeddings to better distinguish between textual inputs with different functional roles, such as an auxiliary caption and a text query. Through extensive experiments, we demonstrate that CaRe-DPO significantly enhances retrieval performance by effectively leveraging auxiliary knowledge to generate fine-grained captions for retrieval. Code is available at https://github.com/mlvlab/CaReDPO.
Barwise Section Boundary Detection in Symbolic Music Using Convolutional Neural Networks
Venue: arXiv cs.SD 2025
Year: 2025

Current methods for Music Structure Analysis (MSA) focus primarily on audio data. While symbolic music can be synthesized into audio and analyzed using existing MSA techniques, such an approach does not exploit symbolic music's rich explicit representation of pitch, timing, and instrumentation. A key subproblem of MSA is section boundary detection-determining whether a given point in time marks the transition between musical sections. In this paper, we study automatic section boundary detection for symbolic music. First, we introduce a human-annotated MIDI dataset for section boundary detection, consisting of metadata from 6134 MIDI files that we manually curated from the Lakh MIDI dataset. Second, we train a deep learning model to classify the presence of section boundaries within a fixed-length musical window. Our data representation involves a novel encoding scheme based on synthesized overtones to encode arbitrary MIDI instrumentations into 3-channel piano rolls. Our model achieves an F1 score of 0.77, improving over the analogous audio-based supervised learning approach and the unsupervised block-matching segmentation (CBM) audio approach by 0.22 and 0.31, respectively. We release our dataset, code, and models.
Learned Digital Codes for Over-the-Air Federated Learning
Venue: arXiv cs.LG 2025
Year: 2025

Federated edge learning (FEEL) enables distributed model training across wireless devices without centralising raw data, but deployment is constrained by the wireless uplink. A promising direction is over-the-air (OTA) aggregation, which merges communication with computation. Existing digital OTA methods can achieve either strong convergence or robustness to noise, but struggle to achieve both simultaneously, limiting performance in low signal-to-noise ratios (SNRs) where many IoT devices operate. This work proposes a learnt digital OTA framework that extends reliable operation into low-SNR conditions while maintaining the same uplink overhead as state-of-the-art. The proposed method combines an unrolled decoder with a jointly learnt unsourced random access codebook. Results show an extension of reliable operation by more than 7 dB, with improved global model convergence across all SNR levels, highlighting the potential of learning-based design for FEEL.
Zero-Shot Human Mobility Forecasting via Large Language Model with Hierarchical Reasoning
Venue: arXiv cs.AI 2025
Year: 2025

Human mobility forecasting is important for applications such as transportation planning, urban management, and personalized recommendations. However, existing methods often fail to generalize to unseen users or locations and struggle to capture dynamic intent due to limited labeled data and the complexity of mobility patterns. We propose ZHMF, a framework for zero-shot human mobility forecasting that combines a semantic enhanced retrieval and reflection mechanism with a hierarchical language model based reasoning system. The task is reformulated as a natural language question answering paradigm. Leveraging LLMs semantic understanding of user histories and context, our approach handles previously unseen prediction scenarios. We further introduce a hierarchical reflection mechanism for iterative reasoning and refinement by decomposing forecasting into an activity level planner and a location level selector, enabling collaborative modeling of long term user intentions and short term contextual preferences. Experiments on standard human mobility datasets show that our approach outperforms existing models. Ablation studies reveal the contribution of each module, and case studies illustrate how the method captures user intentions and adapts to diverse contextual scenarios.
Tides of Memory: Digital Echoes of Netizen Remembran
Venue: arXiv cs.HC 2025
Year: 2025

This artwork presents an interdisciplinary interaction installation that visualizes collective online mourning behavior in China. By focusing on commemorative content posted on Sina Weibo following the deaths of seven prominent Chinese authors, the artwork employs data scraping, natural language processing, and 3D modeling to transform fragmented textual expressions into immersive digital monuments. Through the analysis of word frequencies, topic models, and user engagement metrics, the system constructs a semantic-visual landscape that reflects both authorial legacies and collective memory. This research contributes to the fields of digital humanities, visualization design, and digital memorial architecture by proposing a novel approach for preserving and reactivating collective memory in the digital age.