OpenRaiser/Intern-Atlas huggingface dataset:
No Re-Train, More Gain: Upgrading Backbones with Diffusion model for Pixel-Wise and Weakly-Supervised Few-Shot Segmentation
Venue: arXiv cs.CV 2025
Year: 2025

Few-Shot Segmentation (FSS) aims to segment novel classes using only a few annotated images. Despite considerable progress under pixel-wise support annotation, current FSS methods still face three issues: the inflexibility of backbone upgrade without re-training, the inability to uniformly handle various types of annotations (e.g., scribble, bounding box, mask, and text), and the difficulty in accommodating different annotation quantity. To address these issues simultaneously, we propose DiffUp, a novel framework that conceptualizes the FSS task as a conditional generative problem using a diffusion process. For the first issue, we introduce a backbone-agnostic feature transformation module that converts different segmentation cues into unified coarse priors, facilitating seamless backbone upgrade without re-training. For the second issue, due to the varying granularity of transformed priors from diverse annotation types (scribble, bounding box, mask, and text), we conceptualize these multi-granular transformed priors as analogous to noisy intermediates at different steps of a diffusion model. This is implemented via a self-conditioned modulation block coupled with a dual-level quality modulation branch. For the third issue, we incorporate an uncertainty-aware information fusion module to harmonize the variability across zero-shot, one-shot, and many-shot scenarios. Evaluated through rigorous benchmarks, DiffUp significantly outperforms existing FSS models in terms of flexibility and accuracy.
Cluster Haptic Texture Dataset: Haptic Texture Dataset with Varied Velocity-Direction Sliding Contacts
Venue: arXiv cs.HC 2025
Year: 2025

Haptic sciences and technologies benefit greatly from comprehensive datasets that capture tactile stimuli under controlled, systematic conditions. However, existing haptic datasets collect data through uncontrolled exploration, which hinders the systematic analysis of how motion parameters (e.g., motion direction and velocity) influence tactile perception. This paper introduces Cluster Haptic Texture Dataset, a multimodal dataset recorded using a 3-axis machine with an artificial finger to precisely control sliding velocity and direction. The dataset encompasses 118 textured surfaces across 9 material categories, with recordings at 5 velocity levels (20-60 mm/s) and 8 directions. Each surface was tested under 160 conditions, yielding 18,880 synchronized recordings of audio, acceleration, force, position, and visual data. Validation using convolutional neural networks demonstrates classification accuracies of 96% for texture recognition, 88.76% for velocity estimation, and 78.79% for direction estimation, confirming the dataset's utility for machine learning applications. This resource enables research in haptic rendering, texture recognition algorithms, and human tactile perception mechanisms, supporting the development of realistic haptic interfaces for virtual reality systems and robotic applications.
Sizey: Memory-Efficient Execution of Scientific Workflow Tasks
Venue: arXiv cs.DC 2025
Year: 2025

As the amount of available data continues to grow in fields as diverse as bioinformatics, physics, and remote sensing, the importance of scientific workflows in the design and implementation of reproducible data analysis pipelines increases. When developing workflows, resource requirements must be defined for each type of task in the workflow. Typically, task types vary widely in their computational demands because they are simply wrappers for arbitrary black-box analysis tools. Furthermore, the resource consumption for the same task type can vary considerably as well due to different inputs. Since underestimating memory resources leads to bottlenecks and task failures, workflow developers tend to overestimate memory resources. However, overprovisioning of memory wastes resources and limits cluster throughput. Addressing this problem, we propose Sizey, a novel online memory prediction method for workflow tasks. During workflow execution, Sizey simultaneously trains multiple machine learning models and then dynamically selects the best model for each workflow task. To evaluate the quality of the model, we introduce a novel resource allocation quality (RAQ) score based on memory prediction accuracy and efficiency. Sizey's prediction models are retrained and re-evaluated online during workflow execution, continuously incorporating metrics from completed tasks. Our evaluation with a prototype implementation of Sizey uses metrics from six real-world scientific workflows from the popular nf-core framework and shows a median reduction in memory waste over time of 24.68% compared to the respective best-performing state-of-the-art baseline.
Patched RTC: evaluating LLMs for diverse software development tasks
Venue: arXiv cs.SE 2025
Year: 2025

This paper introduces Patched Round-Trip Correctness (Patched RTC), a novel evaluation technique for Large Language Models (LLMs) applied to diverse software development tasks, particularly focusing on "outer loop" activities such as bug fixing, code review, and documentation updates. Patched RTC extends the original Round-Trip Correctness method to work with any LLM and downstream task, offering a self-evaluating framework that measures consistency and robustness of model responses without human intervention. The study demonstrates a correlation between Patched RTC scores and task-specific accuracy metrics, presenting it as an alternative to the LLM-as-Judge paradigm for open-domain task evaluation. We implement Patched RTC in an open-source framework called patchwork, allowing for transparent evaluation during inference across various patchflows. Experiments comparing GPT-3.5 and GPT-4 models across different software development tasks reveal that Patched RTC effectively distinguishes model performance and task difficulty. The paper also explores the impact of consistency prompts on improving model accuracy, suggesting that Patched RTC can guide prompt refinement and model selection for complex software development workflows.
Flexible Generation of Preference Data for Recommendation Analysis
Venue: arXiv cs.IR 2025
Year: 2025

Simulating a recommendation system in a controlled environment, to identify specific behaviors and user preferences, requires highly flexible synthetic data generation models capable of mimicking the patterns and trends of real datasets. In this context, we propose HYDRA, a novel preferences data generation model driven by three main factors: user-item interaction level, item popularity, and user engagement level. The key innovations of the proposed process include the ability to generate user communities characterized by similar item adoptions, reflecting real-world social influences and trends. Additionally, HYDRA considers item popularity and user engagement as mixtures of different probability distributions, allowing for a more realistic simulation of diverse scenarios. This approach enhances the model's capacity to simulate a wide range of real-world cases, capturing the complexity and variability found in actual user behavior. We demonstrate the effectiveness of HYDRA through extensive experiments on well-known benchmark datasets. The results highlight its capability to replicate real-world data patterns, offering valuable insights for developing and testing recommendation systems in a controlled and realistic manner. The code used to perform the experiments is publicly available at https://github.com/SimoneMungari/HYDRA.
AbdomenAtlas: A Large-Scale, Detailed-Annotated, & Multi-Center Dataset for Efficient Transfer Learning and Open Algorithmic Benchmarking
Venue: arXiv cs.CV 2025
Year: 2025

We introduce the largest abdominal CT dataset (termed AbdomenAtlas) of 20,460 three-dimensional CT volumes sourced from 112 hospitals across diverse populations, geographies, and facilities. AbdomenAtlas provides 673K high-quality masks of anatomical structures in the abdominal region annotated by a team of 10 radiologists with the help of AI algorithms. We start by having expert radiologists manually annotate 22 anatomical structures in 5,246 CT volumes. Following this, a semi-automatic annotation procedure is performed for the remaining CT volumes, where radiologists revise the annotations predicted by AI, and in turn, AI improves its predictions by learning from revised annotations. Such a large-scale, detailed-annotated, and multi-center dataset is needed for two reasons. Firstly, AbdomenAtlas provides important resources for AI development at scale, branded as large pre-trained models, which can alleviate the annotation workload of expert radiologists to transfer to broader clinical applications. Secondly, AbdomenAtlas establishes a large-scale benchmark for evaluating AI algorithms -- the more data we use to test the algorithms, the better we can guarantee reliable performance in complex clinical scenarios. An ISBI & MICCAI challenge named BodyMaps: Towards 3D Atlas of Human Body was launched using a subset of our AbdomenAtlas, aiming to stimulate AI innovation and to benchmark segmentation accuracy, inference efficiency, and domain generalizability. We hope our AbdomenAtlas can set the stage for larger-scale clinical trials and offer exceptional opportunities to practitioners in the medical imaging community. Codes, models, and datasets are available at https://www.zongweiz.com/dataset
Estimating the Increase in Emissions caused by AI-augmented Search
Venue: arXiv cs.CY 2025
Year: 2025

AI-generated answers to conventional search queries dramatically increase the energy consumption. By our estimates, energy demand increase by 60-70 times. This is a based on an updated estimate of energy consumption for conventional search and recent work on the energy demand of queries to the BLOOM model, a 176B parameter model, and OpenAI's GPT-3, which is of similar complexity.
XMeCap: Meme Caption Generation with Sub-Image Adaptability
Venue: arXiv cs.CV 2025
Year: 2025

Humor, deeply rooted in societal meanings and cultural details, poses a unique challenge for machines. While advances have been made in natural language processing, real-world humor often thrives in a multi-modal context, encapsulated distinctively by memes. This paper poses a particular emphasis on the impact of multi-images on meme captioning. After that, we introduce the \textsc{XMeCap} framework, a novel approach that adopts supervised fine-tuning and reinforcement learning based on an innovative reward model, which factors in both global and local similarities between visuals and text. Our results, benchmarked against contemporary models, manifest a marked improvement in caption generation for both single-image and multi-image memes, as well as different meme categories. \textsc{XMeCap} achieves an average evaluation score of 75.85 for single-image memes and 66.32 for multi-image memes, outperforming the best baseline by 6.75\% and 8.56\%, respectively. This research not only establishes a new frontier in meme-related studies but also underscores the potential of machines in understanding and generating humor in a multi-modal setting.
Grammar-based Game Description Generation using Large Language Models
Venue: arXiv cs.AI 2025
Year: 2025

Game Description Language (GDL) provides a standardized way to express diverse games in a machine-readable format, enabling automated game simulation, and evaluation. While previous research has explored game description generation using search-based methods, generating GDL descriptions from natural language remains a challenging task. This paper presents a novel framework that leverages Large Language Models (LLMs) to generate grammatically accurate game descriptions from natural language. Our approach consists of two stages: first, we gradually generate a minimal grammar based on GDL specifications; second, we iteratively improve the game description through grammar-guided generation. Our framework employs a specialized parser that identifies valid subsequences and candidate symbols from LLM responses, enabling gradual refinement of the output to ensure grammatical correctness. Experimental results demonstrate that our iterative improvement approach significantly outperforms baseline methods that directly use LLM outputs. Our code is available at https://github.com/tsunehiko/ggdg
The Human-GenAI Value Loop in Human-Centered Innovation: Beyond the Magical Narrative
Venue: arXiv cs.HC 2025
Year: 2025

Organizations across various industries are still exploring the potential of Generative Artificial Intelligence (GenAI) to enhance knowledge work. While innovation is often viewed as a product of individual creativity, it more commonly unfolds through a highly structured, collaborative process where creativity intertwines with knowledge work. However, the extent and effectiveness of GenAI in supporting this process remain open questions. Our study investigates this issue using a collaborative practice research approach focused on three GenAI-enabled innovation projects conducted over a year within three different organizations. We explored how, why, and when GenAI could be integrated into design sprints, a highly structured, collaborative, and human-centered innovation method. Our research identified challenges and opportunities in synchronizing AI capabilities with human intelligence and creativity. To translate these insights into practical strategies, we propose four recommendations for organizations eager to leverage GenAI to both streamline and bring more value to their innovation processes: (1) establish a collaborative intelligence value loop with GenAI; (2) build trust in GenAI, (3) develop robust data collection and curation workflows, and (4) cultivate a craftsmanship mindset.
Struc2mapGAN: improving synthetic cryo-EM density maps with generative adversarial networks
Venue: arXiv cs.LG 2025
Year: 2025

Generating synthetic cryogenic electron microscopy 3D density maps from molecular structures has potential important applications in structural biology. Yet existing simulation-based methods cannot mimic all the complex features present in experimental maps, such as secondary structure elements. As an alternative, we propose struc2mapGAN, a novel data-driven method that employs a generative adversarial network to produce improved experimental-like density maps from molecular structures. More specifically, struc2mapGAN uses a nested U-Net architecture as the generator, with an additional L1 loss term and further processing of raw training experimental maps to enhance learning efficiency. While struc2mapGAN can promptly generate maps after training, we demonstrate that it outperforms existing simulation-based methods for a wide array of tested maps and across various evaluation metrics.
All-Pairs Suffix-Prefix on Fully Dynamic Set of Strings
Venue: arXiv cs.DS 2025
Year: 2025

The all-pairs suffix-prefix (APSP) problem is a classical problem in string processing which has important applications in bioinformatics. Given a set $\mathcal{S} = \{S_1, \ldots, S_k\}$ of $k$ strings, the APSP problem asks one to compute the longest suffix of $S_i$ that is a prefix of $S_j$ for all $k^2$ ordered pairs $\langle S_i, S_j \rangle$ of strings in $\mathcal{S}$. In this paper, we consider the dynamic version of the APSP problem that allows for insertions of new strings to the set of strings. Our objective is, each time a new string $S_i$ arrives to the current set $\mathcal{S}_{i-1} = \{S_1, \ldots, S_{i-1}\}$ of $i-1$ strings, to compute (1) the longest suffix of $S_i$ that is a prefix of $S_j$ and (2) the longest prefix of $S_i$ that is a suffix of $S_j$ for all $1 \leq j \leq i$. We propose an $O(n)$-space data structure which computes (1) and (2) in $O(|S_i| \log σ+ i)$ time for each new given string $S_i$, where $n$ is the total length of the strings. Further, we show how to extend our methods to the fully dynamic version of the APSP problem allowing for both insertions and deletions of strings.
Enhancing clinical decision support with physiological waveforms -- a multimodal benchmark in emergency care
Venue: arXiv cs.LG 2025
Year: 2025

Background: AI-driven prediction algorithms have the potential to enhance emergency medicine by enabling rapid and accurate decision-making regarding patient status and potential deterioration. However, the integration of multimodal data, including raw waveform signals, remains underexplored in clinical decision support. Methods: We present a dataset and benchmarking protocol designed to advance multimodal decision support in emergency care. Our models utilize demographics, biometrics, vital signs, laboratory values, and electrocardiogram (ECG) waveforms as inputs to predict both discharge diagnoses and patient deterioration. Results: The diagnostic model achieves area under the receiver operating curve (AUROC) scores above 0.8 for 609 out of 1,428 conditions, covering both cardiac (e.g., myocardial infarction) and non-cardiac (e.g., renal disease, diabetes) diagnoses. The deterioration model attains AUROC scores above 0.8 for 14 out of 15 targets, accurately predicting critical events such as cardiac arrest, mechanical ventilation, ICU admission, and mortality. Conclusions: Our study highlights the positive impact of incorporating raw waveform data into decision support models, improving predictive performance. By introducing a unique, publicly available dataset and baseline models, we provide a foundation for measurable progress in AI-driven decision support for emergency care.
Self-supervised pre-training with diffusion model for few-shot landmark detection in x-ray images
Venue: arXiv cs.CV 2025
Year: 2025

Deep neural networks have been extensively applied in the medical domain for various tasks, including image classification, segmentation, and landmark detection. However, their application is often hindered by data scarcity, both in terms of available annotations and images. This study introduces a novel application of denoising diffusion probabilistic models (DDPMs) to the landmark detection task, specifically addressing the challenge of limited annotated data in x-ray imaging. Our key innovation lies in leveraging DDPMs for self-supervised pre-training in landmark detection, a previously unexplored approach in this domain. This method enables accurate landmark detection with minimal annotated training data (as few as 50 images), surpassing both ImageNet supervised pre-training and traditional self-supervised techniques across three popular x-ray benchmark datasets. To our knowledge, this work represents the first application of diffusion models for self-supervised learning in landmark detection, which may offer a valuable pre-training approach in few-shot regimes, for mitigating data scarcity.
BIV-Priv-Seg: Locating Private Content in Images Taken by People With Visual Impairments
Venue: arXiv cs.CV 2025
Year: 2025

Individuals who are blind or have low vision (BLV) are at a heightened risk of sharing private information if they share photographs they have taken. To facilitate developing technologies that can help them preserve privacy, we introduce BIV-Priv-Seg, the first localization dataset originating from people with visual impairments that shows private content. It contains 1,028 images with segmentation annotations for 16 private object categories. We first characterize BIV-Priv-Seg and then evaluate modern models' performance for locating private content in the dataset. We find modern models struggle most with locating private objects that are not salient, small, and lack text as well as recognizing when private content is absent from an image. We facilitate future extensions by sharing our new dataset with the evaluation server at https://vizwiz.org/tasks-and-datasets/object-localization.
The Structure of Financial Equity Research Reports -- Identification of the Most Frequently Asked Questions in Financial Analyst Reports to Automate Equity Research Using Llama 3 and GPT-4
Venue: arXiv cs.CY 2025
Year: 2025

This research dissects financial equity research reports (ERRs) by mapping their content into categories. There is insufficient empirical analysis of the questions answered in ERRs. In particular, it is not understood how frequently certain information appears, what information is considered essential, and what information requires human judgment to distill into an ERR. The study analyzes 72 ERRs sentence-by-sentence, classifying their 4940 sentences into 169 unique question archetypes. We did not predefine the questions but derived them solely from the statements in the ERRs. This approach provides an unbiased view of the content of the observed ERRs. Subsequently, we used public corporate reports to classify the questions' potential for automation. Answers were labeled "text-extractable" if the answers to the question were accessible in corporate reports. 78.7% of the questions in ERRs can be automated. Those automatable question consist of 48.2% text-extractable (suited to processing by large language models, LLMs) and 30.5% database-extractable questions. Only 21.3% of questions require human judgment to answer. We empirically validate using Llama-3-70B and GPT-4-turbo-2024-04-09 that recent advances in language generation and information extraction enable the automation of approximately 80% of the statements in ERRs. Surprisingly, the models complement each other's strengths and weaknesses well. The research confirms that the current writing process of ERRs can likely benefit from additional automation, improving quality and efficiency. The research thus allows us to quantify the potential impacts of introducing large language models in the ERR writing process. The full question list, including the archetypes and their frequency, will be made available online after peer review.
Know Your Limits: A Survey of Abstention in Large Language Models
Venue: arXiv cs.CL 2025
Year: 2025

Abstention, the refusal of large language models (LLMs) to provide an answer, is increasingly recognized for its potential to mitigate hallucinations and enhance safety in LLM systems. In this survey, we introduce a framework to examine abstention from three perspectives: the query, the model, and human values. We organize the literature on abstention methods, benchmarks, and evaluation metrics using this framework, and discuss merits and limitations of prior work. We further identify and motivate areas for future research, such as whether abstention can be achieved as a meta-capability that transcends specific tasks or domains, and opportunities to optimize abstention abilities in specific contexts. In doing so, we aim to broaden the scope and impact of abstention methodologies in AI systems.
IOVS4NeRF:Incremental Optimal View Selection for Large-Scale NeRFs
Venue: arXiv cs.CV 2025
Year: 2025

Large-scale Neural Radiance Fields (NeRF) reconstructions are typically hindered by the requirement for extensive image datasets and substantial computational resources. This paper introduces IOVS4NeRF, a framework that employs an uncertainty-guided incremental optimal view selection strategy adaptable to various NeRF implementations. Specifically, by leveraging a hybrid uncertainty model that combines rendering and positional uncertainties, the proposed method calculates the most informative view from among the candidates, thereby enabling incremental optimization of scene reconstruction. Our detailed experiments demonstrate that IOVS4NeRF achieves high-fidelity NeRF reconstruction with minimal computational resources, making it suitable for large-scale scene applications.