OpenRaiser/Intern-Atlas huggingface dataset:
Long Text and Multi-Table Summarization: Dataset and Method
Venue: arXiv cs.CL 2023
Year: 2023

Automatic document summarization aims to produce a concise summary covering the input document's salient information. Within a report document, the salient information can be scattered in the textual and non-textual content. However, existing document summarization datasets and methods usually focus on the text and filter out the non-textual content. Missing tabular data can limit produced summaries' informativeness, especially when summaries require covering quantitative descriptions of critical metrics in tables. Existing datasets and methods cannot meet the requirements of summarizing long text and multiple tables in each report. To deal with the scarcity of available data, we propose FINDSum, the first large-scale dataset for long text and multi-table summarization. Built on 21,125 annual reports from 3,794 companies, it has two subsets for summarizing each company's results of operations and liquidity. To summarize the long text and dozens of tables in each report, we present three types of summarization methods. Besides, we propose a set of evaluation metrics to assess the usage of numerical information in produced summaries. Dataset analyses and experimental results indicate the importance of jointly considering input textual and tabular data when summarizing report documents.
The XPRESS Challenge: Xray Projectomic Reconstruction -- Extracting Segmentation with Skeletons
Venue: arXiv cs.CV 2023
Year: 2023

The wiring and connectivity of neurons form a structural basis for the function of the nervous system. Advances in volume electron microscopy (EM) and image segmentation have enabled mapping of circuit diagrams (connectomics) within local regions of the mouse brain. However, applying volume EM over the whole brain is not currently feasible due to technological challenges. As a result, comprehensive maps of long-range connections between brain regions are lacking. Recently, we demonstrated that X-ray holographic nanotomography (XNH) can provide high-resolution images of brain tissue at a much larger scale than EM. In particular, XNH is wellsuited to resolve large, myelinated axon tracts (white matter) that make up the bulk of long-range connections (projections) and are critical for inter-region communication. Thus, XNH provides an imaging solution for brain-wide projectomics. However, because XNH data is typically collected at lower resolutions and larger fields-of-view than EM, accurate segmentation of XNH images remains an important challenge that we present here. In this task, we provide volumetric XNH images of cortical white matter axons from the mouse brain along with ground truth annotations for axon trajectories. Manual voxel-wise annotation of ground truth is a time-consuming bottleneck for training segmentation networks. On the other hand, skeleton-based ground truth is much faster to annotate, and sufficient to determine connectivity. Therefore, we encourage participants to develop methods to leverage skeleton-based training. To this end, we provide two types of ground-truth annotations: a small volume of voxel-wise annotations and a larger volume with skeleton-based annotations. Entries will be evaluated on how accurately the submitted segmentations agree with the ground-truth skeleton annotations.
Clinical BioBERT Hyperparameter Optimization using Genetic Algorithm
Venue: arXiv cs.AI 2023
Year: 2023

Clinical factors account only for a small portion, about 10-30%, of the controllable factors that affect an individual's health outcomes. The remaining factors include where a person was born and raised, where he/she pursued their education, what their work and family environment is like, etc. These factors are collectively referred to as Social Determinants of Health (SDoH). The majority of SDoH data is recorded in unstructured clinical notes by physicians and practitioners. Recording SDoH data in a structured manner (in an EHR) could greatly benefit from a dedicated ontology of SDoH terms. Our research focuses on extracting sentences from clinical notes, making use of such an SDoH ontology (called SOHO) to provide appropriate concepts. We utilize recent advancements in Deep Learning to optimize the hyperparameters of a Clinical BioBERT model for SDoH text. A genetic algorithm-based hyperparameter tuning regimen was implemented to identify optimal parameter settings. To implement a complete classifier, we pipelined Clinical BioBERT with two subsequent linear layers and two dropout layers. The output predicts whether a text fragment describes an SDoH issue of the patient. We compared the AdamW, Adafactor, and LAMB optimizers. In our experiments, AdamW outperformed the others in terms of accuracy.
Topological Deep Learning: A Review of an Emerging Paradigm
Venue: arXiv cs.LG 2023
Year: 2023

Topological data analysis (TDA) provides insight into data shape. The summaries obtained by these methods are principled global descriptions of multi-dimensional data whilst exhibiting stable properties such as robustness to deformation and noise. Such properties are desirable in deep learning pipelines but they are typically obtained using non-TDA strategies. This is partly caused by the difficulty of combining TDA constructs (e.g. barcode and persistence diagrams) with current deep learning algorithms. Fortunately, we are now witnessing a growth of deep learning applications embracing topologically-guided components. In this survey, we review the nascent field of topological deep learning by first revisiting the core concepts of TDA. We then explore how the use of TDA techniques has evolved over time to support deep learning frameworks, and how they can be integrated into different aspects of deep learning. Furthermore, we touch on TDA usage for analyzing existing deep models; deep topological analytics. Finally, we discuss the challenges and future prospects of topological deep learning.
MMPD: Multi-Domain Mobile Video Physiology Dataset
Venue: arXiv cs.CV 2023
Year: 2023

Remote photoplethysmography (rPPG) is an attractive method for noninvasive, convenient and concomitant measurement of physiological vital signals. Public benchmark datasets have served a valuable role in the development of this technology and improvements in accuracy over recent years.However, there remain gaps in the public datasets.First, despite the ubiquity of cameras on mobile devices, there are few datasets recorded specifically with mobile phone cameras. Second, most datasets are relatively small and therefore are limited in diversity, both in appearance (e.g., skin tone), behaviors (e.g., motion) and environment (e.g., lighting conditions). In an effort to help the field advance, we present the Multi-domain Mobile Video Physiology Dataset (MMPD), comprising 11 hours of recordings from mobile phones of 33 subjects. The dataset is designed to capture videos with greater representation across skin tone, body motion, and lighting conditions. MMPD is comprehensive with eight descriptive labels and can be used in conjunction with the rPPG-toolbox. The reliability of the dataset is verified by mainstream unsupervised methods and neural methods. The GitHub repository of our dataset: https://github.com/THU-CS-PI/MMPD_rPPG_dataset.
EVEN: An Event-Based Framework for Monocular Depth Estimation at Adverse Night Conditions
Venue: arXiv cs.CV 2023
Year: 2023

Accurate depth estimation under adverse night conditions has practical impact and applications, such as on autonomous driving and rescue robots. In this work, we studied monocular depth estimation at night time in which various adverse weather, light, and different road conditions exist, with data captured in both RGB and event modalities. Event camera can better capture intensity changes by virtue of its high dynamic range (HDR), which is particularly suitable to be applied at adverse night conditions in which the amount of light is limited in the scene. Although event data can retain visual perception that conventional RGB camera may fail to capture, the lack of texture and color information of event data hinders its applicability to accurately estimate depth alone. To tackle this problem, we propose an event-vision based framework that integrates low-light enhancement for the RGB source, and exploits the complementary merits of RGB and event data. A dataset that includes paired RGB and event streams, and ground truth depth maps has been constructed. Comprehensive experiments have been conducted, and the impact of different adverse weather combinations on the performance of framework has also been investigated. The results have shown that our proposed framework can better estimate monocular depth at adverse nights than six baselines.
Classification of Methods to Reduce Clinical Alarm Signals for Remote Patient Monitoring: A Critical Review
Venue: arXiv cs.LG 2023
Year: 2023

Remote Patient Monitoring (RPM) is an emerging technology paradigm that helps reduce clinician workload by automated monitoring and raising intelligent alarm signals. High sensitivity and intelligent data-processing algorithms used in RPM devices result in frequent false-positive alarms, resulting in alarm fatigue. This study aims to critically review the existing literature to identify the causes of these false-positive alarms and categorize the various interventions used in the literature to eliminate these causes. That act as a catalog and helps in false alarm reduction algorithm design. A step-by-step approach to building an effective alarm signal generator for clinical use has been proposed in this work. Second, the possible causes of false-positive alarms amongst RPM applications were analyzed from the literature. Third, a critical review has been done of the various interventions used in the literature depending on causes and classification based on four major approaches: clinical knowledge, physiological data, medical sensor devices, and clinical environments. A practical clinical alarm strategy could be developed by following our pentagon approach. The first phase of this approach emphasizes identifying the various causes for the high number of false-positive alarms. Future research will focus on developing a false alarm reduction method using data mining.
Zero-shot Generation of Coherent Storybook from Plain Text Story using Diffusion Models
Venue: arXiv cs.CV 2023
Year: 2023

Recent advancements in large scale text-to-image models have opened new possibilities for guiding the creation of images through human-devised natural language. However, while prior literature has primarily focused on the generation of individual images, it is essential to consider the capability of these models to ensure coherency within a sequence of images to fulfill the demands of real-world applications such as storytelling. To address this, here we present a novel neural pipeline for generating a coherent storybook from the plain text of a story. Specifically, we leverage a combination of a pre-trained Large Language Model and a text-guided Latent Diffusion Model to generate coherent images. While previous story synthesis frameworks typically require a large-scale text-to-image model trained on expensive image-caption pairs to maintain the coherency, we employ simple textual inversion techniques along with detector-based semantic image editing which allows zero-shot generation of the coherent storybook. Experimental results show that our proposed method outperforms state-of-the-art image editing baselines.
Exploring Affordances for AR in Laparoscopy
Venue: arXiv cs.HC 2023
Year: 2023

This paper explores the possibilities of designing AR interfaces to be used during laparoscopy surgery. It suggests that the laparoscopic video be displayed on AR headsets and that surgeons can consult preoperative image data on that display. Interaction with these elements is necessary, and no patterns exist to design them. Thus the paper proposes a head-gaze and clicker approach that is effective and minimalist. Finally, a prototype is presented, and an evaluation protocol is briefly discussed.
Alamouti-Like Transmission Schemes in Distributed MIMO Networks
Venue: arXiv cs.IT 2023
Year: 2023

The purpose of the study is to investigate potential benefits of using Alamouti-like orthogonal space-time-frequency block codes (STFBC) in distributed multiple-input multiple-output (D-MIMO) systems to increase the diversity at the UE side when instantaneous channel state information (CSI) is not available at radio units (RUs). Most of the existing transmission techniques require instantaneous CSI to form precoders which can only be realized together with accurate and up-to-date channel knowledge. STFBC can increase the diversity at UE side without estimating the downlink channel. Under challenging channel conditions, the network can switch to a robust mode where a certain data rate is maintained for users even without knowing the channel coefficients by means of STFBC. In this study, it will be mainly focused on clustering of RUs and user equipment, where each cluster adopts a possibly different orthogonal code, so that overall spectral efficiency is optimized. Potential performance gains over known techniques that can be used when the channel is not known will be shown and performance gaps to sophisticated precoders making use of channel estimates will be identified.
Structural hierarchical learning for energy networks
Venue: arXiv cs.LG 2023
Year: 2023

Many sectors nowadays require accurate and coherent predictions across their organization to effectively operate. Otherwise, decision-makers would be planning using disparate views of the future, resulting in inconsistent decisions across their sectors. To secure coherency across hierarchies, recent research has put forward hierarchical learning, a coherency-informed hierarchical regressor leveraging the power of machine learning thanks to a custom loss function founded on optimal reconciliation methods. While promising potentials were outlined, results exhibited discordant performances in which coherency information only improved hierarchical forecasts in one setting. This work proposes to tackle these obstacles by investigating custom neural network designs inspired by the topological structures of hierarchies. Results unveil that, in a data-limited setting, structural models with fewer connections perform overall best and demonstrate the coherency information value for both accuracy and coherency forecasting performances, provided individual forecasts were generated within reasonable accuracy limits. Overall, this work expands and improves hierarchical learning methods thanks to a structurally-scaled learning mechanism extension coupled with tailored network designs, producing a resourceful, data-efficient, and information-rich learning process.
CodeLMSec Benchmark: Systematically Evaluating and Finding Security Vulnerabilities in Black-Box Code Language Models
Venue: arXiv cs.CR 2023
Year: 2023

Large language models (LLMs) for automatic code generation have achieved breakthroughs in several programming tasks. Their advances in competition-level programming problems have made them an essential pillar of AI-assisted pair programming, and tools such as GitHub Copilot have emerged as part of the daily programming workflow used by millions of developers. The training data for these models is usually collected from the Internet (e.g., from open-source repositories) and is likely to contain faults and security vulnerabilities. This unsanitized training data can cause the language models to learn these vulnerabilities and propagate them during the code generation procedure. While these models have been extensively assessed for their ability to produce functionally correct programs, there remains a lack of comprehensive investigations and benchmarks addressing the security aspects of these models. In this work, we propose a method to systematically study the security issues of code language models to assess their susceptibility to generating vulnerable code. To this end, we introduce the first approach to automatically find generated code that contains vulnerabilities in black-box code generation models. To achieve this, we present an approach to approximate inversion of the black-box code generation models based on few-shot prompting. We evaluate the effectiveness of our approach by examining code language models in generating high-risk security weaknesses. Furthermore, we establish a collection of diverse non-secure prompts for various vulnerability scenarios using our method. This dataset forms a benchmark for evaluating and comparing the security weaknesses in code language models.
A Multitask, Multilingual, Multimodal Evaluation of ChatGPT on Reasoning, Hallucination, and Interactivity
Venue: arXiv cs.CL 2023
Year: 2023

This paper proposes a framework for quantitatively evaluating interactive LLMs such as ChatGPT using publicly available data sets. We carry out an extensive technical evaluation of ChatGPT using 23 data sets covering 8 different common NLP application tasks. We evaluate the multitask, multilingual and multi-modal aspects of ChatGPT based on these data sets and a newly designed multimodal dataset. We find that ChatGPT outperforms LLMs with zero-shot learning on most tasks and even outperforms fine-tuned models on some tasks. We find that it is better at understanding non-Latin script languages than generating them. It is able to generate multimodal content from textual prompts, via an intermediate code generation step. Moreover, we find that ChatGPT is 63.41% accurate on average in 10 different reasoning categories under logical reasoning, non-textual reasoning, and commonsense reasoning, hence making it an unreliable reasoner. It is, for example, better at deductive than inductive reasoning. ChatGPT suffers from hallucination problems like other LLMs and it generates more extrinsic hallucinations from its parametric memory as it does not have access to an external knowledge base. Finally, the interactive feature of ChatGPT enables human collaboration with the underlying LLM to improve its performance, i.e, 8% ROUGE-1 on summarization and 2% ChrF++ on machine translation, in a multi-turn "prompt engineering" fashion. We also release codebase for evaluation set extraction.
Adaptive Massively Parallel Connectivity in Optimal Space
Venue: arXiv cs.DC 2023
Year: 2023

We study the problem of finding connected components in the Adaptive Massively Parallel Computation (AMPC) model. We show that when we require the total space to be linear in the size of the input graph the problem can be solved in $O(\log^* n)$ rounds in forests (with high probability) and $2^{O(\log^* n)}$ expected rounds in general graphs. This improves upon an existing $O(\log \log_{m/n} n)$ round algorithm. For the case when the desired number of rounds is constant we show that both problems can be solved using $Θ(m + n \log^{(k)} n)$ total space in expectation (in each round), where $k$ is an arbitrarily large constant and $\log^{(k)}$ is the $k$-th iterate of the $\log_2$ function. This improves upon existing algorithms requiring $Ω(m + n \log n)$ total space.
Finding Short Signals in Long Irregular Time Series with Continuous-Time Attention Policy Networks
Venue: arXiv cs.LG 2023
Year: 2023

Irregularly-sampled time series (ITS) are native to high-impact domains like healthcare, where measurements are collected over time at uneven intervals. However, for many classification problems, only small portions of long time series are often relevant to the class label. In this case, existing ITS models often fail to classify long series since they rely on careful imputation, which easily over- or under-samples the relevant regions. Using this insight, we then propose CAT, a model that classifies multivariate ITS by explicitly seeking highly-relevant portions of an input series' timeline. CAT achieves this by integrating three components: (1) A Moment Network learns to seek relevant moments in an ITS's continuous timeline using reinforcement learning. (2) A Receptor Network models the temporal dynamics of both observations and their timing localized around predicted moments. (3) A recurrent Transition Model models the sequence of transitions between these moments, cultivating a representation with which the series is classified. Using synthetic and real data, we find that CAT outperforms ten state-of-the-art methods by finding short signals in long irregular time series.
Real-Word Error Correction with Trigrams: Correcting Multiple Errors in a Sentence
Venue: arXiv cs.CL 2023
Year: 2023

Spelling correction is a fundamental task in Text Mining. In this study, we assess the real-word error correction model proposed by Mays, Damerau and Mercer and describe several drawbacks of the model. We propose a new variation which focuses on detecting and correcting multiple real-word errors in a sentence, by manipulating a Probabilistic Context-Free Grammar (PCFG) to discriminate between items in the search space. We test our approach on the Wall Street Journal corpus and show that it outperforms Hirst and Budanitsky's WordNet-based method and Wilcox-O'Hearn, Hirst, and Budanitsky's fixed windows size method.-O'Hearn, Hirst, and Budanitsky's fixed windows size method.
WF-UNet: Weather Fusion UNet for Precipitation Nowcasting
Venue: arXiv cs.LG 2023
Year: 2023

Designing early warning systems for harsh weather and its effects, such as urban flooding or landslides, requires accurate short-term forecasts (nowcasts) of precipitation. Nowcasting is a significant task with several environmental applications, such as agricultural management or increasing flight safety. In this study, we investigate the use of a UNet core-model and its extension for precipitation nowcasting in western Europe for up to 3 hours ahead. In particular, we propose the Weather Fusion UNet (WF-UNet) model, which utilizes the Core 3D-UNet model and integrates precipitation and wind speed variables as input in the learning process and analyze its influences on the precipitation target task. We have collected six years of precipitation and wind radar images from Jan 2016 to Dec 2021 of 14 European countries, with 1-hour temporal resolution and 31 square km spatial resolution based on the ERA5 dataset, provided by Copernicus, the European Union's Earth observation programme. We compare the proposed WF-UNet model to persistence model as well as other UNet based architectures that are trained only using precipitation radar input data. The obtained results show that WF-UNet outperforms the other examined best-performing architectures by 22%, 8% and 6% lower MSE at a horizon of 1, 2 and 3 hours respectively.
Detecting Data Type Inconsistencies in a Property Graph Database
Venue: arXiv cs.DB 2023
Year: 2023

Some property graph databases do not have a fixed schema, which can result in data type inconsistencies for properties on nodes and relationships, especially when importing data into a running database. Here we present a tool which can rapidly produce a detailed report on every property in the graph. When executed on a large knowledge graph, it allowed us to debug a complex ETL process and enforce 100% data type consistency.
Assessing the impact of regulations and standards on innovation in the field of AI
Venue: arXiv cs.AI 2023
Year: 2023

Regulations and standards in the field of artificial intelligence (AI) are necessary to minimise risks and maximise benefits, yet some argue that they stifle innovation. This paper critically examines the idea that regulation stifles innovation in the field of AI. Current trends in AI regulation, particularly the proposed European AI Act and the standards supporting its implementation, are discussed. Arguments in support of the idea that regulation stifles innovation are analysed and criticised, and an alternative point of view is offered, showing how regulation and standards can foster innovation in the field of AI.