OpenRaiser/Intern-Atlas huggingface dataset:
BioBridge: Bridging Proteins and Language for Enhanced Biological Reasoning with LLMs
Venue: arXiv cs.LG 2026
Year: 2026

Existing Protein Language Models (PLMs) often suffer from limited adaptability to multiple tasks and exhibit poor generalization across diverse biological contexts. In contrast, general-purpose Large Language Models (LLMs) lack the capability to interpret protein sequences and fall short in domain-specific knowledge, limiting their capacity for effective biosemantic reasoning. To combine the advantages of both, we propose BioBridge, a domain-adaptive continual pretraining framework for protein understanding. This framework employs Domain-Incremental Continual Pre-training (DICP) to infuse protein domain knowledge and general reasoning corpus into a LLM simultaneously, effectively mitigating catastrophic forgetting. Cross-modal alignment is achieved via a PLM-Projector-LLM pipeline, which maps protein sequence embeddings into the semantic space of the language model. Ultimately, an end-to-end optimization is adopted to uniformly support various tasks, including protein property prediction and knowledge question-answering. Our proposed BioBridge demonstrates performance comparable to that of mainstream PLMs on multiple protein benchmarks, such as EC and BindingDB. It also achieves results on par with LLMs on general understanding tasks like MMLU and RACE. This showcases its innovative advantage of combining domain-specific adaptability with general-purpose language competency.
Probabilistic NDVI Forecasting from Sparse Satellite Time Series and Weather Covariates
Venue: arXiv cs.LG 2026
Year: 2026

Accurate short-term forecasting of vegetation dynamics is a key enabler for data-driven decision support in precision agriculture. Normalized Difference Vegetation Index (NDVI) forecasting from satellite observations, however, remains challenging due to sparse and irregular sampling caused by cloud coverage, as well as the heterogeneous climatic conditions under which crops evolve. In this work, we propose a probabilistic forecasting framework specifically designed for field-level NDVI prediction under clear-sky acquisition constraints. The method leverages a transformer-based architecture that explicitly separates the modeling of historical vegetation dynamics from future exogenous information, integrating historical NDVI observations with both historical and future meteorological covariates. To address irregular revisit patterns and horizon-dependent uncertainty, we introduce a temporal-distance weighted quantile loss that aligns the training objective with the effective forecasting horizon. In addition, we incorporate cumulative and extreme-weather feature engineering to better capture delayed meteorological effects relevant to vegetation response. Extensive experiments on European satellite data demonstrate that the proposed approach consistently outperforms a diverse set of statistical, deep learning, and recent time series baselines across both point-wise and probabilistic evaluation metrics. Ablation studies further highlight the central role of target history, while showing that meteorological covariates provide complementary gains when jointly exploited. The code is available at https://github.com/arco-group/ndvi-forecasting.
Closing Africa's Early Warning Gap: AI Weather Forecasting for Disaster Prevention
Venue: arXiv cs.CY 2026
Year: 2026

In January 2026, torrential rains killed 200-300 people across Southern Africa, exposing a critical reality: 60% of the continent lacks effective early warning systems due to infrastructure costs. Traditional radar stations exceed USD 1 million each, leaving Africa with an 18x coverage deficit compared to the US and EU. We present a production-grade architecture for deploying NVIDIA Earth-2 AI weather models at USD 1,430-1,730/month for national-scale deployment - enabling coverage at 2,000-4,545x lower cost than radar. The system generates 15-day global atmospheric forecasts, cached in PostgreSQL to enable user queries under 200 milliseconds without real-time inference. Deployed in South Africa in February 2026, our system demonstrates three technical contributions: (1) a ProcessPoolExecutor-based event loop isolation pattern that resolves aiobotocore session lifecycle conflicts in async Python applications; (2) a database-backed serving architecture where the GPU writes global forecasts directly to PostgreSQL, eliminating HTTP transfer bottlenecks for high-resolution tensors; and (3) an automated coordinate management pattern for multi-step inference across 61 timesteps. Forecasts are delivered via WhatsApp, leveraging 80%+ market penetration. This architecture makes continent-scale early warning systems economically viable, supporting UNDRR findings that such systems reduce disaster death rates by 6x. All architectural details are documented inline for full reproducibility.
Nested Training for Mutual Adaptation in Human-AI Teaming
Venue: arXiv cs.RO 2026
Year: 2026

Mutual adaptation is a central challenge in human--AI teaming, as humans naturally adjust their strategies in response to a robot's policy. Existing approaches aim to improve diversity in training partners to approximate human behavior, but these partners are static and fail to capture adaptive behavior of humans. Exposing robots to adaptive behaviors is critical, yet when both agents learn simultaneously in a multi-agent setting, they often converge to opaque implicit coordination strategies that only work with the agents they were co-trained with. Such agents fail to generalize when paired with new partners. In order to capture the adaptive behavior of humans, we model the human-robot teaming scenario as an Interactive Partially Observable Markov Decision Process (I-POMDP), explicitly modeling human adaptation as part of the state. We propose a nested training regime to approximately learn the solution to a finite-level I-POMDP. In this framework, agents at each level are trained against adaptive agents from the level below. This ensures that the ego agent is exposed to adaptive behavior during training while avoiding the emergence of implicit coordination strategies, since the training partners are not themselves learning. We train our method in a multi-episode, required cooperation setup in the Overcooked domain, comparing it against several baseline agents designed for human-robot teaming. We evaluate the performance of our agent when paired with adaptive partners that were not seen during training. Our results demonstrate that our agent not only achieves higher task performance with these adaptive partners but also exhibits significantly greater adaptability during team interactions.
Bayesian Optimality of In-Context Learning with Selective State Spaces
Venue: arXiv cs.LG 2026
Year: 2026

We propose Bayesian optimal sequential prediction as a new principle for understanding in-context learning (ICL). Unlike interpretations framing Transformers as performing implicit gradient descent, we formalize ICL as meta-learning over latent sequence tasks. For tasks governed by Linear Gaussian State Space Models (LG-SSMs), we prove a meta-trained selective SSM asymptotically implements the Bayes-optimal predictor, converging to the posterior predictive mean. We further establish a statistical separation from gradient descent, constructing tasks with temporally correlated noise where the optimal Bayesian predictor strictly outperforms any empirical risk minimization (ERM) estimator. Since Transformers can be seen as performing implicit ERM, this demonstrates selective SSMs achieve lower asymptotic risk due to superior statistical efficiency. Experiments on synthetic LG-SSM tasks and a character-level Markov benchmark confirm selective SSMs converge faster to Bayes-optimal risk, show superior sample efficiency with longer contexts in structured-noise settings, and track latent states more robustly than linear Transformers. This reframes ICL from "implicit optimization" to "optimal inference," explaining the efficiency of selective SSMs and offering a principled basis for architecture design.
The 2025 AI Agent Index: Documenting Technical and Safety Features of Deployed Agentic AI Systems
Venue: arXiv cs.CY 2026
Year: 2026

Agentic AI systems are increasingly capable of performing professional and personal tasks with limited human involvement. However, tracking these developments is difficult because the AI agent ecosystem is complex, rapidly evolving, and inconsistently documented, posing obstacles to both researchers and policymakers. To address these challenges, this paper presents the 2025 AI Agent Index. The Index documents information regarding the origins, design, capabilities, ecosystem, and safety features of 30 state-of-the-art AI agents based on publicly available information and email correspondence with developers. In addition to documenting information about individual agents, the Index illuminates broader trends in the development of agents, their capabilities, and the level of transparency of developers. Notably, we find different transparency levels among agent developers and observe that most developers share little information about safety, evaluations, and societal impacts. The 2025 AI Agent Index is available online at https://aiagentindex.mit.edu
KPM-Bench: A Kinematic Parsing Motion Benchmark for Fine-grained Motion-centric Video Understanding
Venue: arXiv cs.CV 2026
Year: 2026

Despite recent advancements, video captioning models still face significant limitations in accurately describing fine-grained motion details and suffer from severe hallucination issues. These challenges become particularly prominent when generating captions for motion-centric videos, where precise depiction of intricate movements and limb dynamics is crucial yet often neglected. To alleviate this gap, we introduce an automated annotation pipeline that integrates kinematic-based motion computation with linguistic parsing, enabling detailed decomposition and description of complex human motions. Based on this pipeline, we construct and release the Kinematic Parsing Motion Benchmark (KPM-Bench), a novel open-source dataset designed to facilitate fine-grained motion understanding. KPM-Bench consists of (i) fine-grained video-caption pairs that comprehensively illustrate limb-level dynamics in complex actions, (ii) diverse and challenging question-answer pairs focusing specifically on motion understanding, and (iii) a meticulously curated evaluation set specifically designed to assess hallucination phenomena associated with motion descriptions. Furthermore, to address hallucination issues systematically, we propose the linguistically grounded Motion Parsing and Extraction (MoPE) algorithm, capable of accurately extracting motion-specific attributes directly from textual captions. Leveraging MoPE, we introduce a precise hallucination evaluation metric that functions independently of large-scale vision-language or language-only models. By integrating MoPE into the GRPO post-training framework, we effectively mitigate hallucination problems, significantly improving the reliability of motion-centric video captioning models.
The Digital Divide in Generative AI: Evidence from Large Language Model Use in College Admissions Essays
Venue: arXiv cs.CY 2026
Year: 2026

Large language models (LLMs) have become popular writing tools among students and may expand access to high-quality feedback for students with less access to traditional writing support. At the same time, LLMs may standardize student voice or invite overreliance. This study examines how adoption of LLM-assisted writing varies across socioeconomic groups and how it relates to outcomes in a high-stakes context: U.S. college admissions. We analyze a de-identified longitudinal dataset of applications to a selective university from 2020 to 2024 (N = 81,663). Estimating LLM use using a distribution-based detector trained on synthetic and historical essays, we tracked how student writing changed as LLM use proliferated, how adoption differed by socioeconomic status (SES), and whether potential benefits translated equitably into admissions outcomes. Using fee-waiver status as a proxy for SES, we observe post-2023 convergence in surface-level linguistic features, with the largest changes in fee-waived and rejected applicants. Estimated LLM use rose sharply in 2024 across all groups, with disproportionately larger increases among lower SES applicants, consistent with an access hypothesis in which LLMs substitute for scarce writing support. However, increased estimated LLM use was more strongly associated with declines in predicted admission probability for lower SES applicants than for higher SES applicants, even after controlling for academic credentials and stylometric features. These findings raise concerns about equity and the validity of essay-based evaluation in an era of AI-assisted writing and provide the first large-scale longitudinal evidence linking LLM adoption, linguistic change, and evaluative outcomes in college admissions.
Collaborative Processing for Multi-Tenant Inference on Memory-Constrained Edge TPUs
Venue: arXiv cs.DC 2026
Year: 2026

IoT applications are increasingly relying on on-device AI accelerators to ensure high performance, especially in limited connectivity and safety-critical scenarios. However, the limited on-chip memory of these accelerators forces inference runtimes to swap model segments between host and accelerator memory, substantially inflating latency. While collaborative processing by partitioning the model processing between CPU and accelerator resources can reduce accelerator memory pressure and latency, naive partitioning may worsen end-to-end latency by either shifting excessive computation to the CPU or failing to sufficiently curb swapping, a problem that is further amplified in multi-tenant and dynamic environments. To address these issues, we present SwapLess, a system for adaptive, multi-tenant TPU-CPU collaborative inference for memory-constrained Edge TPUs. SwapLess utilizes an analytic queueing model that captures partition-dependent CPU/TPU service times as well as inter- and intra-model swapping overheads across different workload mixes and request rates. Using this model, SwapLess continuously adjusts both the partition point and CPU core allocation online to minimize end-to-end response time with low decision overhead. An implementation on Edge TPU-equipped platforms demonstrates that SwapLess reduces mean latency by up to 63.8% for single-tenant workloads and up to 77.4% for multi-tenant workloads relative to the default Edge TPU compiler.
VQPP: Video Query Performance Prediction Benchmark
Venue: arXiv cs.CV 2026
Year: 2026

Query performance prediction (QPP) is an important and actively studied information retrieval task, having various applications, such as query reformulation, query expansion, and retrieval system selection, among many others. The task has been primarily studied in the context of text and image retrieval, whereas QPP for content-based video retrieval (CBVR) remains largely underexplored. To this end, we propose the first benchmark for video query performance prediction (VQPP), comprising two text-to-video retrieval datasets and two CBVR systems, respectively. VQPP contains a total of 56K text queries and 51K videos, and comes with official training, validation and test splits, fostering direct comparisons and reproducible results. We explore multiple pre-retrieval and post-retrieval performance predictors, creating a representative benchmark for future exploration of QPP in the video domain. Our results show that pre-retrieval predictors obtain competitive performance, enabling applications before performing the retrieval step. We also demonstrate the applicability of VQPP by employing the best performing pre-retrieval predictor as reward model for training a large language model (LLM) on the query reformulation task via direct preference optimization (DPO). We release our benchmark and code at https://github.com/AdrianLutu/VQPP.
Neural Synchrony Between Socially Interacting Language Models
Venue: arXiv cs.CL 2026
Year: 2026

Neuroscience has uncovered a fundamental mechanism of our social nature: human brain activity becomes synchronized with others in many social contexts involving interaction. Traditionally, social minds have been regarded as an exclusive property of living beings. Although large language models (LLMs) are widely accepted as powerful approximations of human behavior, with multi-LLM system being extensively explored to enhance their capabilities, it remains controversial whether they can be meaningfully compared to human social minds. In this work, we explore neural synchrony between socially interacting LLMs as an empirical evidence for this debate. Specifically, we introduce neural synchrony during social simulations as a novel proxy for analyzing the sociality of LLMs at the representational level. Through carefully designed experiments, we demonstrate that it reliably reflects both social engagement and temporal alignment in their interactions. Our findings indicate that neural synchrony between LLMs is strongly correlated with their social performance, highlighting an important link between neural synchrony and the social behaviors of LLMs. Our work offers a new perspective to examine the "social minds" of LLMs, highlighting surprising parallels in the internal dynamics that underlie human and LLM social interaction.
Avoid What You Know: Divergent Trajectory Balance for GFlowNets
Venue: arXiv cs.LG 2026
Year: 2026

Generative Flow Networks (GFlowNets) are a flexible family of amortized samplers trained to generate discrete and compositional objects with probability proportional to a reward function. However, learning efficiency is constrained by the model's ability to rapidly explore diverse high-probability regions during training. To mitigate this issue, recent works have focused on incentivizing the exploration of unvisited and valuable states via curiosity-driven search and self-supervised random network distillation, which tend to waste samples on already well-approximated regions of the state space. In this context, we propose Adaptive Complementary Exploration (ACE), a principled algorithm for the effective exploration of novel and high-probability regions when learning GFlowNets. To achieve this, ACE introduces an exploration GFlowNet explicitly trained to search for high-reward states in regions underexplored by the canonical GFlowNet, which learns to sample from the target distribution. Through extensive experiments, we show that ACE significantly improves upon prior work in terms of approximation accuracy to the target distribution and discovery rate of diverse high-reward states.
Causality by Abstraction: Symbolic Rule Learning in Multivariate Timeseries with Large Language Models
Venue: arXiv cs.LG 2026
Year: 2026

Inferring causal relations in timeseries data with delayed effects is a fundamental challenge, especially when the underlying system exhibits complex dynamics that cannot be captured by simple functional mappings. Traditional approaches often fail to produce generalized and interpretable explanations, as multiple distinct input trajectories may yield nearly indistinguishable outputs. In this work, we present ruleXplain, a framework that leverages Large Language Models (LLMs) to extract formal explanations for input-output relations in simulation-driven dynamical systems. Our method introduces a constrained symbolic rule language with temporal operators and delay semantics, enabling LLMs to generate verifiable causal rules through structured prompting. ruleXplain relies on the availability of a principled model (e.g., a simulator) that maps multivariate input time series to output time series. Within ruleXplain, the simulator is used to generate diverse counterfactual input trajectories that yield similar target output, serving as candidate explanations. Such counterfactual inputs are clustered and provided as context to the LLM, which is tasked with the generation of symbolic rules encoding the joint temporal trends responsible for the patterns observable in the output times series. A closed-loop refinement process ensures rule consistency and semantic validity. We validate the framework using the PySIRTEM epidemic simulator, mapping testing rate inputs to daily infection counts; and the EnergyPlus building energy simulator, observing temperature and solar irradiance inputs to electricity needs. For validation, we perform three classes of experiments: (1) the efficacy of the ruleset through input reconstruction; (2) ablation studies evaluating the causal encoding of the ruleset; and (3) generalization tests of the extracted rules across unseen output trends with varying phase dynamics.
Influence-Preserving Proxies for Gradient-Based Data Selection in LLM Fine-tuning
Venue: arXiv cs.LG 2026
Year: 2026

Supervised fine-tuning (SFT) relies critically on selecting training data that most benefits a model's downstream performance. Gradient-based data selection methods such as TracIn and Influence Functions leverage influence to identify useful samples, but their computational cost scales poorly, making them impractical for multi-billion-parameter large language models (LLMs). A common alternative is to use off-the-shelf smaller models as proxies, but they remain suboptimal since their learning dynamics are unclear, their sizes cannot be flexibly adjusted, and they cannot be further aligned with the target model in terms of gradient-based influence estimation. To address these challenges, we introduce Iprox, a two-stage framework that derives influence-preserving proxies directly from the target model. It first applies a low-rank compression stage to preserve influence information of the target model, and then an aligning stage to align both model gradients and logits, thereby constructing proxies that flexibly control computational cost while retaining the target model's influence. Experimental results across diverse LLM families and evaluation tasks show that Iprox consistently outperforms off-the-shelf proxies and baseline methods. On Qwen3-4B, a 1.5B proxy constructed with Iprox achieves stronger performance than the larger 1.7B off-the-shelf proxy. Notably, on Llama3.2, Iprox achieves better performance than baselines while reducing computational cost by more than half relative to the full 3B model. These results show that Iprox provides effective influence-preserving proxies, making gradient-based data selection more scalable for LLMs.
JAX-Privacy: A library for differentially private machine learning
Venue: arXiv cs.LG 2026
Year: 2026

JAX-Privacy is a library designed to simplify the deployment of robust and performant mechanisms for differentially private machine learning. Guided by design principles of usability, flexibility, and efficiency, JAX-Privacy serves both researchers requiring deep customization and practitioners who want a more out-of-the-box experience. The library provides verified, modular primitives for critical components for all aspects of the mechanism design including batch selection, gradient clipping, noise addition, accounting, and auditing, and brings together a large body of recent research on differentially private ML.