OpenRaiser/Intern-Atlas huggingface dataset:
Do Large Language Models Favor Recent Content? A Study on Recency Bias in LLM-Based Reranking
Venue: arXiv cs.IR 2025
Year: 2025

Large language models (LLMs) are increasingly deployed in information systems, including being used as second-stage rerankers in information retrieval pipelines, yet their susceptibility to recency bias has received little attention. We investigate whether LLMs implicitly favour newer documents by prepending artificial publication dates to passages in the TREC Deep Learning passage retrieval collections in 2021 (DL21) and 2022 (DL22). Across seven models, GPT-3.5-turbo, GPT-4o, GPT-4, LLaMA-3 8B/70B, and Qwen-2.5 7B/72B, "fresh" passages are consistently promoted, shifting the Top-10's mean publication year forward by up to 4.78 years and moving individual items by as many as 95 ranks in our listwise reranking experiments. Although larger models attenuate the effect, none eliminate it. We also observe that the preference of LLMs between two passages with an identical relevance level can be reversed by up to 25% on average after date injection in our pairwise preference experiments. These findings provide quantitative evidence of a pervasive recency bias in LLMs and highlight the importance of effective bias-mitigation strategies.
Transformer Enhanced Relation Classification: A Comparative Analysis of Contextuality, Data Efficiency and Sequence Complexity
Venue: arXiv cs.CL 2025
Year: 2025

In the era of large language model, relation extraction (RE) plays an important role in information extraction through the transformation of unstructured raw text into structured data (Wadhwa et al., 2023). In this paper, we systematically compare the performance of deep supervised learning approaches without transformers and those with transformers. We used a series of non-transformer architectures such as PA-LSTM(Zhang et al., 2017), C-GCN(Zhang et al., 2018), and AGGCN(attention guide GCN)(Guo et al., 2019), and a series of transformer architectures such as BERT, RoBERTa, and R-BERT(Wu and He, 2019). Our comparison included traditional metrics like micro F1, as well as evaluations in different scenarios, varying sentence lengths, and different percentages of the dataset for training. Our experiments were conducted on TACRED, TACREV, and RE-TACRED. The results show that transformer-based models outperform non-transformer models, achieving micro F1 scores of 80-90% compared to 64-67% for non-transformer models. Additionally, we briefly review the research journey in supervised relation classification and discuss the role and current status of large language models (LLMs) in relation extraction.
In-Vivo Skin 3-D Surface Reconstruction and Wrinkle Depth Estimation using Handheld High Resolution Tactile Sensing
Venue: arXiv cs.CV 2025
Year: 2025

Three-dimensional (3-D) skin surface reconstruction offers promise for objective and quantitative dermatological assessment, but no portable, high-resolution device exists that has been validated and used for depth reconstruction across various body locations. We present a compact 3-D skin reconstruction probe based on GelSight tactile imaging with a custom elastic gel and a learning-based reconstruction algorithm for micron-level wrinkle height estimation. Our probe, integrated into a handheld probe with force sensing for consistent contact, achieves a mean absolute error of 12.55 micron on wrinkle-like test objects. In a study with 15 participants without skin disorders, we provide the first validated wrinkle depth metrics across multiple body regions. We further demonstrate statistically significant reductions in wrinkle height at three locations following over-the-counter moisturizer application. Our work offers a validated tool for clinical and cosmetic skin analysis, with potential applications in diagnosis, treatment monitoring, and skincare efficacy evaluation.
No Modality Left Behind: Dynamic Model Generation for Incomplete Medical Data
Venue: arXiv cs.CV 2025
Year: 2025

In real world clinical environments, training and applying deep learning models on multi-modal medical imaging data often struggles with partially incomplete data. Standard approaches either discard missing samples, require imputation or repurpose dropout learning schemes, limiting robustness and generalizability. To address this, we propose a hypernetwork-based method that dynamically generates task-specific classification models conditioned on the set of available modalities. Instead of training a fixed model, a hypernetwork learns to predict the parameters of a task model adapted to available modalities, enabling training and inference on all samples, regardless of completeness. We compare this approach with (1) models trained only on complete data, (2) state of the art channel dropout methods, and (3) an imputation-based method, using artificially incomplete datasets to systematically analyze robustness to missing modalities. Results demonstrate superior adaptability of our method, outperforming state of the art approaches with an absolute increase in accuracy of up to 8% when trained on a dataset with 25% completeness (75% of training data with missing modalities). By enabling a single model to generalize across all modality configurations, our approach provides an efficient solution for real-world multi-modal medical data analysis.
MultiMAE for Brain MRIs: Robustness to Missing Inputs Using Multi-Modal Masked Autoencoder
Venue: arXiv cs.CV 2025
Year: 2025

Missing input sequences are common in medical imaging data, posing a challenge for deep learning models reliant on complete input data. In this work, inspired by MultiMAE [2], we develop a masked autoencoder (MAE) paradigm for multi-modal, multi-task learning in 3D medical imaging with brain MRIs. Our method treats each MRI sequence as a separate input modality, leveraging a late-fusion-style transformer encoder to integrate multi-sequence information (multi-modal) and individual decoder streams for each modality for multi-task reconstruction. This pretraining strategy guides the model to learn rich representations per modality while also equipping it to handle missing inputs through cross-sequence reasoning. The result is a flexible and generalizable encoder for brain MRIs that infers missing sequences from available inputs and can be adapted to various downstream applications. We demonstrate the performance and robustness of our method against an MAE-ViT baseline in downstream segmentation and classification tasks, showing absolute improvement of $10.1$ overall Dice score and $0.46$ MCC over the baselines with missing input sequences. Our experiments demonstrate the strength of this pretraining strategy. The implementation is made available.
CognitiveSky: Scalable Sentiment and Narrative Analysis for Decentralized Social Media
Venue: arXiv cs.CL 2025
Year: 2025

The emergence of decentralized social media platforms presents new opportunities and challenges for real-time analysis of public discourse. This study introduces CognitiveSky, an open-source and scalable framework designed for sentiment, emotion, and narrative analysis on Bluesky, a federated Twitter or X.com alternative. By ingesting data through Bluesky's Application Programming Interface (API), CognitiveSky applies transformer-based models to annotate large-scale user-generated content and produces structured and analyzable outputs. These summaries drive a dynamic dashboard that visualizes evolving patterns in emotion, activity, and conversation topics. Built entirely on free-tier infrastructure, CognitiveSky achieves both low operational cost and high accessibility. While demonstrated here for monitoring mental health discourse, its modular design enables applications across domains such as disinformation detection, crisis response, and civic sentiment analysis. By bridging large language models with decentralized networks, CognitiveSky offers a transparent, extensible tool for computational social science in an era of shifting digital ecosystems.
Triangle-Covered Graphs: Algorithms, Complexity, and Structure
Venue: arXiv cs.DS 2025
Year: 2025

The widely studied edge modification problems ask how to minimally alter a graph to satisfy certain structural properties. In this paper, we introduce and study a new edge modification problem centered around transforming a given graph into a triangle-covered graph (one in which every vertex belongs to at least one triangle). We first present tight lower bounds on the number of edges in any connected triangle-covered graph of order $n$, and then we characterize all connected graphs that attain this minimum edge count. For a graph $G$, we define the notion of a $Δ$-completion set as a set of non-edges of $G$ whose addition to $G$ results in a triangle-covered graph. We prove that the decision problem of finding a $Δ$-completion set of size at most $t\geq0$ is $\mathbb{NP}$-complete and does not admit a constant-factor approximation algorithm under standard complexity assumptions. Moreover, we show that this problem remains $\mathbb{NP}$-complete even when the input is restricted to connected bipartite graphs. We then study the problem from an algorithmic perspective, providing tight bounds on the minimum $Δ$-completion set size for several graph classes, including trees, chordal graphs, and cactus graphs. Furthermore, we show that the triangle-covered problem admits an $(\ln n +1)$-approximation algorithm for general graphs. For trees and chordal graphs, we design algorithms that compute minimum $Δ$-completion sets. Finally, we show that the threshold for a random graph $\mathbb{G}(n, p)$ to be triangle-covered occurs at $n^{-2/3}$.
Tabular Data with Class Imbalance: Predicting Electric Vehicle Crash Severity with Pretrained Transformers (TabPFN) and Mamba-Based Models
Venue: arXiv cs.LG 2025
Year: 2025

This study presents a deep tabular learning framework for predicting crash severity in electric vehicle (EV) collisions using real-world crash data from Texas (2017-2023). After filtering for electric-only vehicles, 23,301 EV-involved crash records were analyzed. Feature importance techniques using XGBoost and Random Forest identified intersection relation, first harmful event, person age, crash speed limit, and day of week as the top predictors, along with advanced safety features like automatic emergency braking. To address class imbalance, Synthetic Minority Over-sampling Technique and Edited Nearest Neighbors (SMOTEENN) resampling was applied. Three state-of-the-art deep tabular models, TabPFN, MambaNet, and MambaAttention, were benchmarked for severity prediction. While TabPFN demonstrated strong generalization, MambaAttention achieved superior performance in classifying severe injury cases due to its attention-based feature reweighting. The findings highlight the potential of deep tabular architectures for improving crash severity prediction and enabling data-driven safety interventions in EV crash contexts.
No Community Detection Method to Rule Them All!
Venue: arXiv cs.SI 2025
Year: 2025

Community detection is a core tool for analyzing large realworld graphs. It is often used to derive additional local features of vertices and edges that will be used to perform a downstream task, yet the impact of community detection on downstream tasks is poorly understood. Prior work largely evaluates community detection algorithms by their intrinsic objectives (e.g., modularity). Or they evaluate the impact of using community detection onto on the downstream task. But the impact of particular community detection algortihm support the downstream task. We study the relationship between community structure and downstream performance across multiple algorithms and two tasks. Our analysis links community-level properties to task metrics (F1, precision, recall, AUC) and reveals that the choice of detection method materially affects outcomes. We explore thousands of community structures and show that while the properties of communities are the reason behind the impact on task performance, no single property explains performance in a direct way. Rather, results emerge from complex interactions among properties. As such, no standard community detection algorithm will derive the best downstream performance. We show that a method combining random community generation and simple machine learning techniques can derive better performance
Drug Repurposing Using Deep Embedded Clustering and Graph Neural Networks
Venue: arXiv cs.LG 2025
Year: 2025

Drug repurposing has historically been an economically infeasible process for identifying novel uses for abandoned drugs. Modern machine learning has enabled the identification of complex biochemical intricacies in candidate drugs; however, many studies rely on simplified datasets with known drug-disease similarities. We propose a machine learning pipeline that uses unsupervised deep embedded clustering, combined with supervised graph neural network link prediction to identify new drug-disease links from multi-omic data. Unsupervised autoencoder and cluster training reduced the dimensionality of omic data into a compressed latent embedding. A total of 9,022 unique drugs were partitioned into 35 clusters with a mean silhouette score of 0.8550. Graph neural networks achieved strong statistical performance, with a prediction accuracy of 0.901, receiver operating characteristic area under the curve of 0.960, and F1-Score of 0.901. A ranked list comprised of 477 per-cluster link probabilities exceeding 99 percent was generated. This study could provide new drug-disease link prospects across unrelated disease domains, while advancing the understanding of machine learning in drug repurposing studies.
Design and Development of a Remotely Wire-Driven Walking Robot
Venue: arXiv cs.RO 2025
Year: 2025

Operating in environments too harsh or inaccessible for humans is one of the critical roles expected of robots. However, such environments often pose risks to electronic components as well. To overcome this, various approaches have been developed, including autonomous mobile robots without electronics, hydraulic remotely actuated mobile robots, and long-reach robot arms driven by wires. Among these, electronics-free autonomous robots cannot make complex decisions, while hydraulically actuated mobile robots and wire-driven robot arms are used in harsh environments such as nuclear power plants. Mobile robots offer greater reach and obstacle avoidance than robot arms, and wire mechanisms offer broader environmental applicability than hydraulics. However, wire-driven systems have not been used for remote actuation of mobile robots. In this study, we propose a novel mechanism called Remote Wire Drive that enables remote actuation of mobile robots via wires. This mechanism is a series connection of decoupled joints, a mechanism used in wire-driven robot arms, adapted for power transmission. We experimentally validated its feasibility by actuating a wire-driven quadruped robot, which we also developed in this study, through Remote Wire Drive.
Unsupervised Candidate Ranking for Lexical Substitution via Holistic Sentence Semantics
Venue: arXiv cs.CL 2025
Year: 2025

A key subtask in lexical substitution is ranking the given candidate words. A common approach is to replace the target word with a candidate in the original sentence and feed the modified sentence into a model to capture semantic differences before and after substitution. However, effectively modeling the bidirectional influence of candidate substitution on both the target word and its context remains challenging. Existing methods often focus solely on semantic changes at the target position or rely on parameter tuning over multiple evaluation metrics, making it difficult to accurately characterize semantic variation. To address this, we investigate two approaches: one based on attention weights and another leveraging the more interpretable integrated gradients method, both designed to measure the influence of context tokens on the target token and to rank candidates by incorporating semantic similarity between the original and substituted sentences. Experiments on the LS07 and SWORDS datasets demonstrate that both approaches improve ranking performance.
HiChunk: Evaluating and Enhancing Retrieval-Augmented Generation with Hierarchical Chunking
Venue: arXiv cs.CL 2025
Year: 2025

Retrieval-Augmented Generation (RAG) enhances the response capabilities of language models by integrating external knowledge sources. However, document chunking as an important part of RAG system often lacks effective evaluation tools. This paper first analyzes why existing RAG evaluation benchmarks are inadequate for assessing document chunking quality, specifically due to evidence sparsity. Based on this conclusion, we propose HiCBench, which includes manually annotated multi-level document chunking points, synthesized evidence-dense quetion answer(QA) pairs, and their corresponding evidence sources. Additionally, we introduce the HiChunk framework, a multi-level document structuring framework based on fine-tuned LLMs, combined with the Auto-Merge retrieval algorithm to improve retrieval quality. Experiments demonstrate that HiCBench effectively evaluates the impact of different chunking methods across the entire RAG pipeline. Moreover, HiChunk achieves better chunking quality within reasonable time consumption, thereby enhancing the overall performance of RAG systems.
Dstack: A Zero Trust Framework for Confidential Containers
Venue: arXiv cs.CR 2025
Year: 2025

Web3 applications require execution platforms that maintain confidentiality and integrity without relying on centralized trust authorities. While Trusted Execution Environments (TEEs) offer promising capabilities for confidential computing, current implementations face significant limitations when applied to Web3 contexts, particularly in security reliability, censorship resistance, and vendor independence. This paper presents dstack, a comprehensive framework that transforms raw TEE technology into a true Zero Trust platform. We introduce three key innovations: (1) Portable Confidential Containers that enable seamless workload migration across heterogeneous TEE environments while maintaining security guarantees, (2) Decentralized Code Management that leverages smart contracts for transparent governance of TEE applications, and (3) Verifiable Domain Management that ensures secure and verifiable application identity without centralized authorities. These innovations are implemented through three core components: dstack-OS, dstack-KMS, and dstack-Gateway. Together, they demonstrate how to achieve both the performance advantages of VM-level TEE solutions and the trustless guarantees required by Web3 applications. Our evaluation shows that dstack provides comprehensive security guarantees while maintaining practical usability for real-world applications.
Sedeve-Kit, a Specification-Driven Development Framework for Building Distributed Systems
Venue: arXiv cs.SE 2025
Year: 2025

Developing distributed systems presents significant challenges, primarily due to the complexity introduced by non-deterministic concurrency and faults. To address these, we propose a specification-driven development framework. Our method encompasses three key stages. The first stage defines system specifications and invariants using TLA${^+}$. It allows us to perform model checking on the algorithm's correctness and generate test cases for subsequent development phases. In the second stage, based on the established specifications, we write code to ensure consistency and accuracy in the implementation. Finally, after completing the coding process, we rigorously test the system using the test cases generated in the initial stage. This process ensures system quality by maintaining a strong connection between the abstract design and the concrete implementation through continuous verification.
Bhaasha, Bhasa, Zaban: A Survey for Low-Resourced Languages in South Asia -- Current Stage and Challenges
Venue: arXiv cs.CL 2025
Year: 2025

Rapid developments of large language models have revolutionized many NLP tasks for English data. Unfortunately, the models and their evaluations for low-resource languages are being overlooked, especially for languages in South Asia. Although there are more than 650 languages in South Asia, many of them either have very limited computational resources or are missing from existing language models. Thus, a concrete question to be answered is: Can we assess the current stage and challenges to inform our NLP community and facilitate model developments for South Asian languages? In this survey, we have comprehensively examined current efforts and challenges of NLP models for South Asian languages by retrieving studies since 2020, with a focus on transformer-based models, such as BERT, T5, & GPT. We present advances and gaps across 3 essential aspects: data, models, & tasks, such as available data sources, fine-tuning strategies, & domain applications. Our findings highlight substantial issues, including missing data in critical domains (e.g., health), code-mixing, and lack of standardized evaluation benchmarks. Our survey aims to raise awareness within the NLP community for more targeted data curation, unify benchmarks tailored to cultural and linguistic nuances of South Asia, and encourage an equitable representation of South Asian languages. The complete list of resources is available at: https://github.com/trust-nlp/LM4SouthAsia-Survey.
A Survey of Reasoning and Agentic Systems in Time Series with Large Language Models
Venue: arXiv cs.AI 2025
Year: 2025

Time series reasoning treats time as a first-class axis and incorporates intermediate evidence directly into the answer. This survey defines the problem and organizes the literature by reasoning topology with three families: direct reasoning in one step, linear chain reasoning with explicit intermediates, and branch-structured reasoning that explores, revises, and aggregates. The topology is crossed with the main objectives of the field, including traditional time series analysis, explanation and understanding, causal inference and decision making, and time series generation, while a compact tag set spans these axes and captures decomposition and verification, ensembling, tool use, knowledge access, multimodality, agent loops, and LLM alignment regimes. Methods and systems are reviewed across domains, showing what each topology enables and where it breaks down in faithfulness or robustness, along with curated datasets, benchmarks, and resources that support study and deployment (https://github.com/blacksnail789521/Time-Series-Reasoning-Survey). Evaluation practices that keep evidence visible and temporally aligned are highlighted, and guidance is distilled on matching topology to uncertainty, grounding with observable artifacts, planning for shift and streaming, and treating cost and latency as design budgets. We emphasize that reasoning structures must balance capacity for grounding and self-correction against computational cost and reproducibility, while future progress will likely depend on benchmarks that tie reasoning quality to utility and on closed-loop testbeds that trade off cost and risk under shift-aware, streaming, and long-horizon settings. Taken together, these directions mark a shift from narrow accuracy toward reliability at scale, enabling systems that not only analyze but also understand, explain, and act on dynamic worlds with traceable evidence and credible outcomes.