OpenRaiser/Intern-Atlas huggingface dataset:
Can Modern NLP Systems Reliably Annotate Chest Radiography Exams? A Pre-Purchase Evaluation and Comparative Study of Solutions from AWS, Google, Azure, John Snow Labs, and Open-Source Models on an Independent Pediatric Dataset
Venue: arXiv cs.CL 2025
Year: 2025

General-purpose clinical natural language processing (NLP) tools are increasingly used for the automatic labeling of clinical reports. However, independent evaluations for specific tasks, such as pediatric chest radiograph (CXR) report labeling, are limited. This study compares four commercial clinical NLP systems - Amazon Comprehend Medical (AWS), Google Healthcare NLP (GC), Azure Clinical NLP (AZ), and SparkNLP (SP) - for entity extraction and assertion detection in pediatric CXR reports. Additionally, CheXpert and CheXbert, two dedicated chest radiograph report labelers, were evaluated on the same task using CheXpert-defined labels. We analyzed 95,008 pediatric CXR reports from a large academic pediatric hospital. Entities and assertion statuses (positive, negative, uncertain) from the findings and impression sections were extracted by the NLP systems, with impression section entities mapped to 12 disease categories and a No Findings category. CheXpert and CheXbert extracted the same 13 categories. Outputs were compared using Fleiss Kappa and accuracy against a consensus pseudo-ground truth. Significant differences were found in the number of extracted entities and assertion distributions across NLP systems. SP extracted 49,688 unique entities, GC 16,477, AZ 31,543, and AWS 27,216. Assertion accuracy across models averaged around 62%, with SP highest (76%) and AWS lowest (50%). CheXpert and CheXbert achieved 56% accuracy. Considerable variability in performance highlights the need for careful validation and review before deploying NLP tools for clinical report labeling.
Towards Privacy-Preserving Fine-Grained Visual Classification via Hierarchical Learning from Label Proportions
Venue: arXiv cs.CV 2025
Year: 2025

In recent years, Fine-Grained Visual Classification (FGVC) has achieved impressive recognition accuracy, despite minimal inter-class variations. However, existing methods heavily rely on instance-level labels, making them impractical in privacy-sensitive scenarios such as medical image analysis. This paper aims to enable accurate fine-grained recognition without direct access to instance labels. To achieve this, we leverage the Learning from Label Proportions (LLP) paradigm, which requires only bag-level labels for efficient training. Unlike existing LLP-based methods, our framework explicitly exploits the hierarchical nature of fine-grained datasets, enabling progressive feature granularity refinement and improving classification accuracy. We propose Learning from Hierarchical Fine-Grained Label Proportions (LHFGLP), a framework that incorporates Unrolled Hierarchical Fine-Grained Sparse Dictionary Learning, transforming handcrafted iterative approximation into learnable network optimization. Additionally, our proposed Hierarchical Proportion Loss provides hierarchical supervision, further enhancing classification performance. Experiments on three widely-used fine-grained datasets, structured in a bag-based manner, demonstrate that our framework consistently outperforms existing LLP-based methods. We will release our code and datasets to foster further research in privacy-preserving fine-grained classification.
Deep Modeling and Optimization of Medical Image Classification
Venue: arXiv cs.CV 2025
Year: 2025

Deep models, such as convolutional neural networks (CNNs) and vision transformer (ViT), demonstrate remarkable performance in image classification. However, those deep models require large data to fine-tune, which is impractical in the medical domain due to the data privacy issue. Furthermore, despite the feasible performance of contrastive language image pre-training (CLIP) in the natural domain, the potential of CLIP has not been fully investigated in the medical field. To face these challenges, we considered three scenarios: 1) we introduce a novel CLIP variant using four CNNs and eight ViTs as image encoders for the classification of brain cancer and skin cancer, 2) we combine 12 deep models with two federated learning techniques to protect data privacy, and 3) we involve traditional machine learning (ML) methods to improve the generalization ability of those deep models in unseen domain data. The experimental results indicate that maxvit shows the highest averaged (AVG) test metrics (AVG = 87.03\%) in HAM10000 dataset with multimodal learning, while convnext\_l demonstrates remarkable test with an F1-score of 83.98\% compared to swin\_b with 81.33\% in FL model. Furthermore, the use of support vector machine (SVM) can improve the overall test metrics with AVG of $\sim 2\%$ for swin transformer series in ISIC2018. Our codes are available at https://github.com/AIPMLab/SkinCancerSimulation.
Self-Correcting Code Generation Using Small Language Models
Venue: arXiv cs.CL 2025
Year: 2025

Self-correction has demonstrated potential in code generation by allowing language models to revise and improve their outputs through successive refinement. Recent studies have explored prompting-based strategies that incorporate verification or feedback loops using proprietary models, as well as training-based methods that leverage their strong reasoning capabilities. However, whether smaller models possess the capacity to effectively guide their outputs through self-reflection remains unexplored. Our findings reveal that smaller models struggle to exhibit reflective revision behavior across both self-correction paradigms. In response, we introduce CoCoS, an approach designed to enhance the ability of small language models for multi-turn code correction. Specifically, we propose an online reinforcement learning objective that trains the model to confidently maintain correct outputs while progressively correcting incorrect outputs as turns proceed. Our approach features an accumulated reward function that aggregates rewards across the entire trajectory and a fine-grained reward better suited to multi-turn correction scenarios. This facilitates the model in enhancing initial response quality while achieving substantial improvements through self-correction. With 1B-scale models, CoCoS achieves improvements of 35.8% on the MBPP and 27.7% on HumanEval compared to the baselines.
Speeding up Model Loading with fastsafetensors
Venue: arXiv cs.DC 2025
Year: 2025

The rapid increases in model parameter sizes introduces new challenges in pre-trained model loading. Currently, machine learning code often deserializes each parameter as a tensor object in host memory before copying it to device memory. We found that this approach underutilized storage throughput and significantly slowed down loading large models with a widely-used model file formats, safetensors. In this work, we present fastsafetensors, a Python library designed to optimize the deserialization of tensors in safetensors files. Our approach first copies groups of on-disk parameters to device memory, where they are directly instantiated as tensor objects. This design enables further optimization in low-level I/O and high-level tensor preprocessing, including parallelized copying, peer-to-peer DMA, and GPU offloading. Experimental results show performance improvements of 4.8x to 7.5x in loading models such as Llama (7, 13, and 70 billion parameters), Falcon (40 billion parameters), and the Bloom (176 billion parameters).
LeMoRe: Learn More Details for Lightweight Semantic Segmentation
Venue: arXiv cs.CV 2025
Year: 2025

Lightweight semantic segmentation is essential for many downstream vision tasks. Unfortunately, existing methods often struggle to balance efficiency and performance due to the complexity of feature modeling. Many of these existing approaches are constrained by rigid architectures and implicit representation learning, often characterized by parameter-heavy designs and a reliance on computationally intensive Vision Transformer-based frameworks. In this work, we introduce an efficient paradigm by synergizing explicit and implicit modeling to balance computational efficiency with representational fidelity. Our method combines well-defined Cartesian directions with explicitly modeled views and implicitly inferred intermediate representations, efficiently capturing global dependencies through a nested attention mechanism. Extensive experiments on challenging datasets, including ADE20K, CityScapes, Pascal Context, and COCO-Stuff, demonstrate that LeMoRe strikes an effective balance between performance and efficiency.
Redundancy Parameterization of the ABB YuMi Robot Arm
Venue: arXiv cs.RO 2025
Year: 2025

The ABB YuMi is a 7-DOF collaborative robot arm with a complex, redundant kinematic structure. Path planning for the YuMi is challenging, especially with joint limits considered. The redundant degree of freedom is parameterized by the Shoulder-Elbow-Wrist (SEW) angle, called the arm angle by ABB, but the exact definition must be known for path planning outside the RobotStudio simulator. We provide the first complete and validated definition of the SEW angle used for the YuMi. It follows the conventional SEW angle formulation with the shoulder-elbow direction chosen to be the direction of the fourth joint axis. Our definition also specifies the shoulder location, making it compatible with any choice of reference vector. A previous attempt to define the SEW angle exists in the literature, but it is incomplete and deviates from the behavior observed in RobotStudio. Because our formulation fits within the general SEW angle framework, we also obtain the expression for the SEW angle Jacobian and complete numerical conditions for all algorithmic singularities. Finally, we demonstrate using IK-Geo, our inverse kinematics (IK) solver based on subproblem decomposition, to find all IK solutions using 2D search. Code examples are available in a publicly accessible repository.
Decom-Renorm-Merge: Model Merging on the Right Space Improves Multitasking
Venue: arXiv cs.LG 2025
Year: 2025

In the era of large-scale training, model merging has evolved into a tool for creating multitasking models efficiently. It enables the knowledge of models to be fused, without the need for heavy computation as required in traditional multitask learning. Existing merging methods often assume that entries at identical positions in weight matrices serve the same function, enabling straightforward entry-wise comparison and merging. However, this assumption overlooks the complexity of finetuned neural networks, where neurons may develop distinct feature compositions, making direct entry-wise merging problematic. We present Decom-Renorm-Merge (DRM), a simple yet effective approach that leverages Singular Value Decomposition to decompose and coordinate weight matrices into an aligned joint space, where entry-wise merging becomes possible. We showcase the effectiveness of DRM across various settings ranging from smaller encoder-based such as ViT and DeBERTa, encoder-decoder-based such as T5, and larger decoder-based such as Llama3.1-8B. Our experimental results show that DRM outperforms several state-of-the-art merging techniques across full finetuning and low-rank adaptation settings. Moreover, our analysis reveals renormalization as the crucial component for creating a robust and even joint space for merging, significantly contributing to the method's performance.
Elicit and Enhance: Advancing Multimodal Reasoning in Medical Scenarios
Venue: arXiv cs.CL 2025
Year: 2025

Effective clinical decision-making depends on iterative, multimodal reasoning across diverse sources of evidence. The recent emergence of multimodal reasoning models has significantly transformed the landscape of solving complex tasks. Although such models have achieved notable success in mathematics and science, their application to medical domains remains underexplored. In this work, we propose \textit{MedE$^2$}, a two-stage post-training pipeline that elicits and then enhances multimodal reasoning for medical domains. In Stage-I, we fine-tune models using 2,000 text-only data samples containing precisely orchestrated reasoning demonstrations to elicit reasoning behaviors. In Stage-II, we further enhance the model's reasoning capabilities using 1,500 rigorously curated multimodal medical cases, aligning model reasoning outputs with our proposed multimodal medical reasoning preference. Extensive experiments demonstrate the efficacy and reliability of \textit{MedE$^2$} in improving the reasoning performance of medical multimodal models. Notably, models trained with \textit{MedE$^2$} consistently outperform baselines across multiple medical multimodal benchmarks. Additional validation on larger models and under inference-time scaling further confirms the robustness and practical utility of our approach.
FlowAlign: Trajectory-Regularized, Inversion-Free Flow-based Image Editing
Venue: arXiv cs.CV 2025
Year: 2025

Recent inversion-free, flow-based image editing methods such as FlowEdit leverages a pre-trained noise-to-image flow model such as Stable Diffusion 3, enabling text-driven manipulation by solving an ordinary differential equation (ODE). While the lack of exact latent inversion is a core advantage of these methods, it often results in unstable editing trajectories and poor source consistency. To address this limitation, we propose {\em FlowAlign}, a novel inversion-free flow-based framework for consistent image editing with optimal control-based trajectory control. Specifically, FlowAlign introduces source similarity at the terminal point as a regularization term to promote smoother and more consistent trajectories during the editing process. Notably, our terminal point regularization is shown to explicitly balance semantic alignment with the edit prompt and structural consistency with the source image along the trajectory. Furthermore, FlowAlign naturally supports reverse editing by simply reversing the ODE trajectory, highliting the reversible and consistent nature of the transformation. Extensive experiments demonstrate that FlowAlign outperforms existing methods in both source preservation and editing controllability.
Large induced subgraph with a given pathwidth in outerplanar graphs
Venue: arXiv cs.DM 2025
Year: 2025

A long-standing conjecture by Albertson and Berman states that every planar graph of order $n$ has an induced forest with at least $\lceil \frac{n}{2} \rceil$ vertices. As a variant of this conjecture, Chappell conjectured that every planar graph of order $n$ has an induced linear forest with at least $\lceil \frac{4n}{9} \rceil$ vertices. Pelsmajer proved that every outerplanar graph of order $n$ has an induced linear forest with at least $\lceil \frac{4n+2}{7}\rceil$ vertices and this bound is sharp. In this paper, we investigate the order of induced subgraphs of outerplanar graphs with a given pathwidth. The above result by Pelsmajer implies that every outerplanar graph of order $n$ has an induced subgraph with pathwidth one and at least $\lceil \frac{4n+2}{7}\rceil$ vertices. We extend this to obtain a result on the maximum order of any outerplanar graph with at most a given pathwidth. We also give its upper bound which generalizes Pelsmajer's construction.
Best Arm Identification with Possibly Biased Offline Data
Venue: arXiv cs.LG 2025
Year: 2025

We study the best arm identification (BAI) problem with potentially biased offline data in the fixed confidence setting, which commonly arises in real-world scenarios such as clinical trials. We prove an impossibility result for adaptive algorithms without prior knowledge of the bias bound between online and offline distributions. To address this, we propose the LUCB-H algorithm, which introduces adaptive confidence bounds by incorporating an auxiliary bias correction to balance offline and online data within the LUCB framework. Theoretical analysis shows that LUCB-H matches the sample complexity of standard LUCB when offline data is misleading and significantly outperforms it when offline data is helpful. We also derive an instance-dependent lower bound that matches the upper bound of LUCB-H in certain scenarios. Numerical experiments further demonstrate the robustness and adaptability of LUCB-H in effectively incorporating offline data.
Cross-Task Experiential Learning on LLM-based Multi-Agent Collaboration
Venue: arXiv cs.CL 2025
Year: 2025

Large Language Model-based multi-agent systems (MAS) have shown remarkable progress in solving complex tasks through collaborative reasoning and inter-agent critique. However, existing approaches typically treat each task in isolation, resulting in redundant computations and limited generalization across structurally similar tasks. To address this, we introduce multi-agent cross-task experiential learning (MAEL), a novel framework that endows LLM-driven agents with explicit cross-task learning and experience accumulation. We model the task-solving workflow on a graph-structured multi-agent collaboration network, where agents propagate information and coordinate via explicit connectivity. During the experiential learning phase, we quantify the quality for each step in the task-solving workflow and store the resulting rewards along with the corresponding inputs and outputs into each agent's individual experience pool. During inference, agents retrieve high-reward, task-relevant experiences as few-shot examples to enhance the effectiveness of each reasoning step, thereby enabling more accurate and efficient multi-agent collaboration. Experimental results on diverse datasets demonstrate that MAEL empowers agents to learn from prior task experiences effectively-achieving faster convergence and producing higher-quality solutions on current tasks.
Navigating the Accuracy-Size Trade-Off with Flexible Model Merging
Venue: arXiv cs.CV 2025
Year: 2025

Model merging has emerged as an efficient method to combine multiple single-task fine-tuned models. The merged model can enjoy multi-task capabilities without expensive training. While promising, merging into a single model often suffers from an accuracy gap with respect to the fine-tuned models. On the other hand, deploying all individual fine-tuned models incurs high storage costs. We propose FlexMerge, a novel data-free model merging framework that: (a) flexibly generates merged models of varying sizes, spanning the full spectrum from a single merged model to retaining all fine-tuned models; and (b) supports multiple merging algorithms in a unified framework. Using FlexMerge, we systematically characterize the accuracy-size trade-off of different algorithms. Our study reveals two key findings: first, even modestly larger merged models can yield steep accuracy gains (up to 13.5% when just doubling the size); second, algorithm rankings are not consistent as size increases, with some methods overtaking others beyond the one-model regime. These results uncover a new design dimension for model merging: developing and comparing algorithms across the full spectrum of sizes rather than only at the single-model limit. Extensive experiments on vision and NLP benchmarks, with up to 30 tasks, confirm the generality and practicality of FlexMerge.
Context-Aware Semantic Communication for the Wireless Networks
Venue: arXiv cs.NI 2025
Year: 2025

In next-generation wireless networks, supporting real-time applications such as augmented reality, autonomous driving, and immersive Metaverse services demands stringent constraints on bandwidth, latency, and reliability. Existing semantic communication (SemCom) approaches typically rely on static models, overlooking dynamic conditions and contextual cues vital for efficient transmission. To address these challenges, we propose CaSemCom, a context-aware SemCom framework that leverages a Large Language Model (LLM)-based gating mechanism and a Mixture of Experts (MoE) architecture to adaptively select and encode only high-impact semantic features across multiple data modalities. Our multimodal, multi-user case study demonstrates that CaSemCom significantly improves reconstructed image fidelity while reducing bandwidth usage, outperforming single-agent deep reinforcement learning (DRL) methods and traditional baselines in convergence speed, semantic accuracy, and retransmission overhead.
Automatic Construction of Multiple Classification Dimensions for Managing Approaches in Scientific Papers
Venue: arXiv cs.CL 2025
Year: 2025

Approaches form the foundation for conducting scientific research. Querying approaches from a vast body of scientific papers is extremely time-consuming, and without a well-organized management framework, researchers may face significant challenges in querying and utilizing relevant approaches. Constructing multiple dimensions on approaches and managing them from these dimensions can provide an efficient solution. Firstly, this paper identifies approach patterns using a top-down way, refining the patterns through four distinct linguistic levels: semantic level, discourse level, syntactic level, and lexical level. Approaches in scientific papers are extracted based on approach patterns. Additionally, five dimensions for categorizing approaches are identified using these patterns. This paper proposes using tree structure to represent step and measuring the similarity between different steps with a tree-structure-based similarity measure that focuses on syntactic-level similarities. A collection similarity measure is proposed to compute the similarity between approaches. A bottom-up clustering algorithm is proposed to construct class trees for approach components within each dimension by merging each approach component or class with its most similar approach component or class in each iteration. The class labels generated during the clustering process indicate the common semantics of the step components within the approach components in each class and are used to manage the approaches within the class. The class trees of the five dimensions collectively form a multi-dimensional approach space. The application of approach queries on the multi-dimensional approach space demonstrates that querying within this space ensures strong relevance between user queries and results and rapidly reduces search space through a class-based query mechanism.
UniTEX: Universal High Fidelity Generative Texturing for 3D Shapes
Venue: arXiv cs.CV 2025
Year: 2025

We present UniTEX, a novel two-stage 3D texture generation framework to create high-quality, consistent textures for 3D assets. Existing approaches predominantly rely on UV-based inpainting to refine textures after reprojecting the generated multi-view images onto the 3D shapes, which introduces challenges related to topological ambiguity. To address this, we propose to bypass the limitations of UV mapping by operating directly in a unified 3D functional space. Specifically, we first propose that lifts texture generation into 3D space via Texture Functions (TFs)--a continuous, volumetric representation that maps any 3D point to a texture value based solely on surface proximity, independent of mesh topology. Then, we propose to predict these TFs directly from images and geometry inputs using a transformer-based Large Texturing Model (LTM). To further enhance texture quality and leverage powerful 2D priors, we develop an advanced LoRA-based strategy for efficiently adapting large-scale Diffusion Transformers (DiTs) for high-quality multi-view texture synthesis as our first stage. Extensive experiments demonstrate that UniTEX achieves superior visual quality and texture integrity compared to existing approaches, offering a generalizable and scalable solution for automated 3D texture generation. Code will available in: https://github.com/YixunLiang/UniTEX.