OpenRaiser/Intern-Atlas huggingface dataset:
The DNA Coverage Depth Problem: Duality, Weight Distributions, and Applications
Venue: arXiv cs.IT 2026
Year: 2026

The coverage depth problem in DNA data storage is about computing the expected number of reads needed to recover all encoded strands. Given a generator matrix of a linear code, this quantity equals the expected number of randomly drawn columns required to obtain full rank. While MDS codes are optimal when they exist, i.e., over large fields, practical scenarios may rely on structured code families defined over small fields. In this work, we develop combinatorial tools to solve the DNA coverage depth problem for various linear codes, based on duality arguments and the notion of extended weight enumerator. Using these methods, we derive closed formulas for the simplex, Hamming, ternary Golay, extended ternary Golay, and first-order Reed-Muller codes. The centerpiece of this paper is a general expression for the coverage depth of a linear code in terms of the weight distributions of its higher-field extensions.
Mapping the long-term trajectories of political violence in Africa
Venue: arXiv cs.SI 2026
Year: 2026

Existing models of political violence often emphasize discrete transitions, when conflicts emerge, escalate, or subside, without considering the longer trajectories of violence that accumulate across time and space. This paper introduces a spatially explicit longitudinal sequence analysis to address this gap. Using event-level data from the Armed Conflict Location and Event Dataset covering Africa from 1997 to 2024, we classify locations according to the intensity and spatial concentration of violence, tracing how these states evolve into distinct conflict trajectories. Applying optimal matching and clustering techniques, we identify six recurrent patterns ranging from short-lived, localized outbreaks to protracted high-intensity conflicts. We further assess how these trajectories align across neighboring areas, revealing evidence of spatial interdependence, particularly in border regions. By highlighting the temporal rhythms and geographic linkages of political violence, the study advances conflict research beyond isolated transitions and provides a framework for understanding the life cycles of violence.
Speak in Context: Multilingual ASR with Speech Context Alignment via Contrastive Learning
Venue: arXiv cs.CL 2026
Year: 2026

Automatic speech recognition (ASR) has benefited from advances in pretrained speech and language models, yet most systems remain constrained to monolingual settings and short, isolated utterances. While recent efforts in context-aware ASR show promise, two key challenges persist: limited multilingual support and the absence of principled alignment between speech and contextual representations. In this paper, we introduce a context-aware multilingual ASR framework that supports diverse languages and accents while preserving the modularity of pretrained models. Our approach combines a frozen speech encoder and a decoder-only language model via a lightweight projection module, allowing structured context prompts, including dialogue history and biasing words, to guide transcription. To improve interaction between speech and context, we employ a contrastive learning objective that aligns their representations in a shared embedding space. Evaluations on over 1,500 hours of real-world conversational speech across 11 languages and 5 English dialects show that contextual input consistently improves recognition quality. Contrastive alignment provides additional gains when applied to different context types, with an overall performance gain of over 5%. These results highlight the importance of both contextual modeling and cross-modal alignment in multilingual ASR.
Self-Supervised Flow Matching for Scalable Multi-Modal Synthesis
Venue: arXiv cs.CV 2026
Year: 2026

Strong semantic representations improve the convergence and generation quality of diffusion and flow models. Existing approaches largely rely on external models, which require separate training, operate on misaligned objectives, and exhibit unexpected scaling behavior. We argue that this dependence arises from the model's training objective, which poses a denoising task with little incentive to learn semantic representations. We introduce Self-Flow: a self-supervised flow matching paradigm that integrates representation learning within the generative framework. Our key mechanism, Dual-Timestep Scheduling, applies heterogeneous noise levels across tokens, creating an information asymmetry that forces the model to infer missing information from corrupted inputs. This drives learning strong representations alongside generative capabilities without external supervision. Our method generalizes across modalities and enables multi-modal training while following expected scaling laws, achieving superior image, video, and audio generation.
Artificial Intelligence for Detecting Fetal Orofacial Clefts and Advancing Medical Education
Venue: arXiv cs.CV 2026
Year: 2026

Orofacial clefts are among the most common congenital craniofacial abnormalities, yet accurate prenatal detection remains challenging due to the scarcity of experienced specialists and the relative rarity of the condition. Early and reliable diagnosis is essential to enable timely clinical intervention and reduce associated morbidity. Here we show that an artificial intelligence system, trained on over 45,139 ultrasound images from 9,215 fetuses across 22 hospitals, can diagnose fetal orofacial clefts with sensitivity and specificity exceeding 93% and 95% respectively, matching the performance of senior radiologists and substantially outperforming junior radiologists. When used as a medical copilot, the system raises junior radiologists' sensitivity by more than 6%. Beyond direct diagnostic assistance, the system also accelerates the development of clinical expertise. A pilot study involving 24 radiologists and trainees demonstrated that the model can improve the expertise development for rare conditions. This dual-purpose approach offers a scalable solution for improving both diagnostic accuracy and specialist training in settings where experienced radiologists are scarce.
NEGATE: Constrained Semantic Guidance for Linguistic Negation in Text-to-Video Diffusion
Venue: arXiv cs.CV 2026
Year: 2026

Negation is a fundamental linguistic operator, yet it remains inadequately modeled in diffusion-based generative systems. In this work, we present a formal treatment of linguistic negation in diffusion-based generative models by modeling it as a structured feasibility constraint on semantic guidance within diffusion dynamics. Rather than introducing heuristics or retraining model parameters, we reinterpret classifier-free guidance as defining a semantic update direction and enforce negation by projecting the update onto a convex constraint set derived from linguistic structure. This novel formulation provides a unified framework for handling diverse negation phenomena, including object absence, graded non-inversion semantics, multi-negation composition, and scope-sensitive disambiguation. Our approach is training-free, compatible with pretrained diffusion backbones, and naturally extends from image generation to temporally evolving video trajectories. In addition, we introduce a structured negation-centric benchmark suite that isolates distinct linguistic failure modes in generative systems, to further research in this area. Experiments demonstrate that our method achieves robust negation compliance while preserving visual fidelity and structural coherence, establishing the first unified formulation of linguistic negation in diffusion-based generative models beyond representation-level evaluation.
Asymmetric Stream Allocation and Linear Decodability in MIMO Coded Caching
Venue: arXiv cs.IT 2026
Year: 2026

Coded caching (CC) can transform cache memory at network devices into an active communication resource. Prior studies have shown that CC can significantly enhance the achievable Degrees of Freedom (DoF) in multi-input multi-output (MIMO) systems. To fully exploit MIMO-CC gains across all SNR regimes and enable practical linear receivers, flexible scheduling is required. Existing DoF analysis, scheduling, and linear receiver design, however, largely assume symmetric stream allocations across users. This paper extends the authors' recent work on DoF and linear decodability analysis for MIMO-CC systems by deriving a simple criterion, based on per-user stream allocation, that guarantees linear decodability for both symmetric and non-symmetric bit-level CC schemes. Building on this, we propose a heuristic MIMO-CC delivery and scheduling framework that enables asymmetric stream allocation while adhering to linear decodability, thereby expanding the feasibility region of achievable DoF compared to symmetric-constrained designs.
EgoReasoner: Learning Egocentric 4D Reasoning via Task-Adaptive Structured Thinking
Venue: arXiv cs.CV 2026
Year: 2026

Egocentric video understanding is inherently complex due to the dynamic 4D nature of the environment, where camera motion and object displacements necessitate a continuous re-evaluation of spatial relations. In this work, we target a suite of under-explored egocentric 4D reasoning tasks, including fixture interaction counting, viewpoint-relative fixture location, object movement itinerary tracking, and stationary object localization, that require fundamentally different cognitive operations: spatial anchoring, temporal tracking, and duration reasoning. We observe that these structural differences make task-agnostic approaches insufficient: generic Chain-of-Thought methods lack task-appropriate reasoning primitives, and uniform reinforcement learning actively destabilizes performance on spatial tasks. To address this, we propose EgoReasoner, a two-stage framework that aligns both the reasoning scaffold and the reward signal to each task's cognitive structure. In the first stage, Task-Adaptive Thinking Templates guide the synthesis of structured CoT traces that teach the model to reason adaptively across task types via supervised fine-tuning. In the second stage, task-aware reward functions verify entity grounding, temporal alignment, and task-adaptive logical consistency, selectively strengthening each reasoning pathway via reinforcement fine-tuning with GRPO. Our 3B-parameter model, trained on only 16K samples, achieves 37.5% average accuracy on the challenging HD-EPIC benchmark, surpassing Qwen2.5-VL-7B (25.7%) by over 10 points.
Penguin-VL: Exploring the Efficiency Limits of VLM with LLM-based Vision Encoders
Venue: arXiv cs.CV 2026
Year: 2026

Vision Language Model (VLM) development has largely relied on scaling model size, which hinders deployment on compute-constrained mobile and edge devices such as smartphones and robots. In this work, we explore the performance limits of compact (e.g., 2B and 8B) VLMs. We challenge the prevailing practice that state-of-the-art VLMs must rely on vision encoders initialized via massive contrastive pretraining (e.g., CLIP/SigLIP). We identify an objective mismatch: contrastive learning, optimized for discrimination, enforces coarse and category-level invariances that suppress fine-grained visual cues needed for dense captioning and complex VLM reasoning. To address this issue, we present Penguin-VL, whose vision encoder is initialized from a text-only LLM. Our experiments reveal that Penguin-Encoder serves as a superior alternative to traditional contrastive pretraining, unlocking a higher degree of visual fidelity and data efficiency for multimodal understanding. Across various image and video benchmarks, Penguin-VL achieves performance comparable to leading VLMs (e.g., Qwen3-VL) in mathematical reasoning and surpasses them in tasks such as document understanding, visual knowledge, and multi-perspective video understanding. Notably, these gains are achieved with a lightweight architecture, demonstrating that improved visual representation rather than model scaling is the primary driver of performance. Our ablations show that Penguin-Encoder consistently outperforms contrastive-pretrained encoders, preserving fine-grained spatial and temporal cues that are critical for dense perception and complex reasoning. This makes it a strong drop-in alternative for compute-efficient VLMs and enables high performance in resource-constrained settings. Code: https://github.com/tencent-ailab/Penguin-VL
SUREON: A Benchmark and Vision-Language-Model for Surgical Reasoning
Venue: arXiv cs.CV 2026
Year: 2026

Surgeons don't just see -- they interpret. When an expert observes a surgical scene, they understand not only what instrument is being used, but why it was chosen, what risk it poses, and what comes next. Current surgical AI cannot answer such questions, largely because training data that explicitly encodes surgical reasoning is immensely difficult to annotate at scale. Yet surgical video lectures already contain exactly this -- explanations of intent, rationale, and anticipation, narrated by experts for the purpose of teaching. Though inherently noisy and unstructured, these narrations encode the reasoning that surgical AI currently lacks. We introduce SUREON, a large-scale video QA dataset that systematically harvests this training signal from surgical academic videos. SUREON defines 12 question categories covering safety assessment, decision rationale, and forecasting, and uses a multi-agent pipeline to extract and structure supervision at scale. Across 134.7K clips and 170 procedure types, SUREON yields 206.8k QA pairs and an expert-validated benchmark of 354 examples. To evaluate the extent to which this supervision translates to surgical reasoning ability, we introduce two models: SureonVLM, a vision-language model adapted through supervised fine-tuning, and SureonVLM-R1, a reasoning model trained with Group Relative Policy Optimization. Both models can answer complex questions about surgery and substantially outperform larger general-domain models, exceeding 84% accuracy on the SUREON benchmark while outperforming general-domain models on standard surgical perception tasks. Qualitative analysis of SureonVLM-R1 reveals explicit reasoning behavior, such as inferring operative intent from visual context.
Agentic SPARQL: Evaluating SPARQL-MCP-powered Intelligent Agents on the Federated KGQA Benchmark
Venue: arXiv cs.IR 2026
Year: 2026

Standard protocols such as the Model Context Protocol (MCP) that allow LLMs to connect to tools have recently boosted "agentic" AI applications, which, powered by LLMs' planning capabilities, promise to solve complex tasks with the access of external tools and data sources. In this context, publicly available SPARQL endpoints offer a natural connection to combine various data sources through MCP by (a) implementing a standardised protocol and query language, (b) standardised metadata formats, and (c) the native capability to federate queries. In the present paper, we explore the potential of SPARQL-MCP-based intelligent agents to facilitate federated SPARQL querying: firstly, we discuss how to extend an existing Knowledge Graph Question Answering benchmark towards agentic federated Knowledge Graph Question Answering (FKGQA); secondly, we implement and evaluate the ability of integrating SPARQL federation with LLM agents via MCP (incl. endpoint discovery/source selection, schema exploration, and query formulation), comparing different architectural options against the extended benchmark. Our work complements and extends prior work on automated SPARQL query federation towards fruitful combinations with agentic AI.
Right Move, Right Time: Multi-Sport Space Evaluation Platform for Ultimate Frisbee, Basketball, and Soccer
Venue: arXiv cs.HC 2026
Year: 2026

We present an open, sport-agnostic platform that turns tracking into comparable spatial measures across professional Ultimate, basketball, and soccer. Coaches in all three sports ask the same question: where is the usable space, and when should an off-ball run start? Our workflow standardizes inputs, provides timing-aware spatial evaluations, and makes it possible to reuse the same analysis across sports. We illustrate the approach with Ultimate as a focused testbed and then examine transfer between basketball and soccer. Together, these results show a practical path toward consistent, comparable evaluation across various invasion sports.
Autonomous AI Agents for Option Hedging: Enhancing Financial Stability through Shortfall Aware Reinforcement Learning
Venue: arXiv cs.AI 2026
Year: 2026

The deployment of autonomous AI agents in derivatives markets has widened a practical gap between static model calibration and realized hedging outcomes. We introduce two reinforcement learning frameworks, a novel Replication Learning of Option Pricing (RLOP) approach and an adaptive extension of Q-learner in Black-Scholes (QLBS), that prioritize shortfall probability and align learning objectives with downside sensitive hedging. Using listed SPY and XOP options, we evaluate models using realized path delta hedging outcome distributions, shortfall probability, and tail risk measures such as Expected Shortfall. Empirically, RLOP reduces shortfall frequency in most slices and shows the clearest tail-risk improvements in stress, while implied volatility fit often favors parametric models yet poorly predicts after-cost hedging performance. This friction-aware RL framework supports a practical approach to autonomous derivatives risk management as AI-augmented trading systems scale.
Isotonic Layer: A Universal Framework for Generic Recommendation Debiasing
Venue: arXiv cs.IR 2026
Year: 2026

Model calibration and debiasing are fundamental to the reliability and fairness of large scale recommendation systems. We introduce the Isotonic Layer, a novel, differentiable framework that integrates piecewise linear fitting directly into neural architectures. By partitioning the feature space into discrete segments and optimizing non negative slopes via a constrained dot product mechanism, we enforce a global monotonic inductive bias. This ensures model outputs remain logically consistent with critical features such as latent relevance, recency, or quality scores. We further generalize this architecture by parameterizing segment wise slopes as learnable embeddings. This enables the model to adaptively capture context specific distortions, such as position based CTR bias through specialized isotonic profiles. Our approach utilizes a dual task formulation that decouples the recommendation objective into latent relevance estimation and bias aware calibration. A major contribution of this work is the ability to perform highly granular, customized calibration for arbitrary combinations of context features, a level of control difficult to achieve with traditional non parametric methods. We also extend this to Multi Task Learning environments with dedicated embeddings for distinct objectives. Extensive empirical evaluations on real world datasets and production AB tests demonstrate that the Isotonic Layer effectively mitigates systematic bias and enhances calibration fidelity, significantly outperforming production baselines in both predictive accuracy and ranking consistency.
Rethinking Personalization in Large Language Models at the Token Level
Venue: arXiv cs.CL 2026
Year: 2026

With large language models (LLMs) now performing strongly across diverse tasks, there is growing demand for them to personalize outputs for individual users. Personalization is typically framed as an additional layer on top of a base NLP task, requiring model responses to meet user-specific needs while still accomplishing the underlying task. From a token-level perspective, different tokens in a response contribute to personalization to varying degrees. Tokens with higher personalization relevance should therefore receive greater emphasis when developing personalized LLMs. However, accurately estimating such personalization degrees remains challenging. To address this challenge, we propose PerContrast, a self-contrast method that estimates each output token's dependence on user-specific information through causal intervention. Building on this mechanism, we develop the PerCE loss, which adaptively upweights tokens with higher estimated personalization degrees during training via a bootstrap procedure, enabling the model to alternate between estimating and optimizing these tokens. Experiments on multiple LLMs demonstrate that PerCE substantially improves personalization performance with minimal additional cost, achieving average gains of over 10% and up to 68.04% on the LongLaMP dataset, along with strong cross-task and cross-scenario transferability. These results highlight the importance of token-level personalization modeling and establish token-aware training as a simple yet effective paradigm for advancing personalized LLMs.
A Novel Approach for Testing Water Safety Using Deep Learning Inference of Microscopic Images of Unincubated Water Samples
Venue: arXiv cs.OH 2026
Year: 2026

Fecal-contaminated water causes diseases and even death. Current microbial water safety tests require pathogen incubation, taking 24-72 hours and costing \$20-\$50 per test. This paper presents a solution (DeepScope) exceeding UNICEF's ideal Target Product Profile requirements for presence/absence testing, with an estimated per-test cost of \$0.44. By eliminating the need for pathogen incubation, DeepScope reduces testing time by over 98\%. In DeepScope, a dataset of microscope images of bacteria and water samples was assembled. An innovative augmentation technique, generating up to 21 trillion images from a single microscope image, was developed. Four convolutional neural network models were developed using transfer learning and regularization techniques, then evaluated on a field-test dataset comprising 100,000 microscope images of unseen, real-world water samples collected from fourteen different water sources across Sammamish, WA. Precision-recall analysis showed the DeepScope model achieves 93\% accuracy, with precision of 90\% and recall exceeding 94\%. The DeepScope model was deployed on a web server, and mobile applications for Android and iOS were developed, enabling Internet-based or smartphone-based water safety testing, with results obtained in seconds.
GraphSkill: Documentation-Guided Hierarchical Retrieval-Augmented Coding for Complex Graph Reasoning
Venue: arXiv cs.SE 2026
Year: 2026

The growing demand for automated graph algorithm reasoning has attracted increasing attention in the large language model (LLM) community. Recent LLM-based graph reasoning methods typically decouple task descriptions from graph data, generate executable code augmented by retrieval from technical documentation, and refine the code through debugging. However, we identify two key limitations in existing approaches: (i) they treat technical documentation as flat text collections and ignore its hierarchical structure, leading to noisy retrieval that degrades code generation quality; and (ii) their debugging mechanisms focus primarily on runtime errors, yet ignore more critical logical errors. To address them, we propose {\method}, an \textit{agentic hierarchical retrieval-augmented coding framework} that exploits the document hierarchy through top-down traversal and early pruning, together with a \textit{self-debugging coding agent} that iteratively refines code using automatically generated small-scale test cases. To enable comprehensive evaluation of complex graph reasoning, we introduce a new dataset, {\dataset}, covering small-scale, large-scale, and composite graph reasoning tasks. Extensive experiments demonstrate that our method achieves higher task accuracy and lower inference cost compared to baselines\footnote{The code is available at \href{https://github.com/FairyFali/GraphSkill}{\textcolor{blue}{https://github.com/FairyFali/GraphSkill}}.}.