OpenRaiser/Intern-Atlas huggingface dataset:
Contrast-Phys+: Unsupervised and Weakly-supervised Video-based Remote Physiological Measurement via Spatiotemporal Contrast
Venue: arXiv cs.CV 2024
Year: 2024

Video-based remote physiological measurement utilizes facial videos to measure the blood volume change signal, which is also called remote photoplethysmography (rPPG). Supervised methods for rPPG measurements have been shown to achieve good performance. However, the drawback of these methods is that they require facial videos with ground truth (GT) physiological signals, which are often costly and difficult to obtain. In this paper, we propose Contrast-Phys+, a method that can be trained in both unsupervised and weakly-supervised settings. We employ a 3DCNN model to generate multiple spatiotemporal rPPG signals and incorporate prior knowledge of rPPG into a contrastive loss function. We further incorporate the GT signals into contrastive learning to adapt to partial or misaligned labels. The contrastive loss encourages rPPG/GT signals from the same video to be grouped together, while pushing those from different videos apart. We evaluate our methods on five publicly available datasets that include both RGB and Near-infrared videos. Contrast-Phys+ outperforms the state-of-the-art supervised methods, even when using partially available or misaligned GT signals, or no labels at all. Additionally, we highlight the advantages of our methods in terms of computational efficiency, noise robustness, and generalization. Our code is available at https://github.com/zhaodongsun/contrast-phys.
Multi-Robot Informative Path Planning from Regression with Sparse Gaussian Processes (with Appendix)
Venue: arXiv cs.RO 2024
Year: 2024

This paper addresses multi-robot informative path planning (IPP) for environmental monitoring. The problem involves determining informative regions in the environment that should be visited by robots to gather the most information about the environment. We propose an efficient sparse Gaussian process-based approach that uses gradient descent to optimize paths in continuous environments. Our approach efficiently scales to both spatially and spatio-temporally correlated environments. Moreover, our approach can simultaneously optimize the informative paths while accounting for routing constraints, such as a distance budget and limits on the robot's velocity and acceleration. Our approach can be used for IPP with both discrete and continuous sensing robots, with point and non-point field-of-view sensing shapes, and for both single and multi-robot IPP. We demonstrate that the proposed approach is fast and accurate on real-world data.
Mitigating Group Bias in Federated Learning for Heterogeneous Devices
Venue: arXiv cs.LG 2024
Year: 2024

Federated Learning is emerging as a privacy-preserving model training approach in distributed edge applications. As such, most edge deployments are heterogeneous in nature i.e., their sensing capabilities and environments vary across deployments. This edge heterogeneity violates the independence and identical distribution (IID) property of local data across clients and produces biased global models i.e. models that contribute to unfair decision-making and discrimination against a particular community or a group. Existing bias mitigation techniques only focus on bias generated from label heterogeneity in non-IID data without accounting for domain variations due to feature heterogeneity and do not address global group-fairness property. Our work proposes a group-fair FL framework that minimizes group-bias while preserving privacy and without resource utilization overhead. Our main idea is to leverage average conditional probabilities to compute a cross-domain group \textit{importance weights} derived from heterogeneous training data to optimize the performance of the worst-performing group using a modified multiplicative weights update method. Additionally, we propose regularization techniques to minimize the difference between the worst and best-performing groups while making sure through our thresholding mechanism to strike a balance between bias reduction and group performance degradation. Our evaluation of human emotion recognition and image classification benchmarks assesses the fair decision-making of our framework in real-world heterogeneous settings.
Developing a Novel Image Marker to Predict the Clinical Outcome of Neoadjuvant Chemotherapy (NACT) for Ovarian Cancer Patients
Venue: arXiv cs.CV 2024
Year: 2024

Objective Neoadjuvant chemotherapy (NACT) is one kind of treatment for advanced stage ovarian cancer patients. However, due to the nature of tumor heterogeneity, the clinical outcomes to NACT vary significantly among different subgroups. Partial responses to NACT may lead to suboptimal debulking surgery, which will result in adverse prognosis. To address this clinical challenge, the purpose of this study is to develop a novel image marker to achieve high accuracy prognosis prediction of NACT at an early stage. Methods For this purpose, we first computed a total of 1373 radiomics features to quantify the tumor characteristics, which can be grouped into three categories: geometric, intensity, and texture features. Second, all these features were optimized by principal component analysis algorithm to generate a compact and informative feature cluster. This cluster was used as input for developing and optimizing support vector machine (SVM) based classifiers, which indicated the likelihood of receiving suboptimal cytoreduction after the NACT treatment. Two different kernels for SVM algorithm were explored and compared. A total of 42 ovarian cancer cases were retrospectively collected to validate the scheme. A nested leave-one-out cross-validation framework was adopted for model performance assessment. Results The results demonstrated that the model with a Gaussian radial basis function kernel SVM yielded an AUC (area under the ROC [receiver characteristic operation] curve) of 0.806. Meanwhile, this model achieved overall accuracy (ACC) of 83.3%, positive predictive value (PPV) of 81.8%, and negative predictive value (NPV) of 83.9%. Conclusion This study provides meaningful information for the development of radiomics based image markers in NACT treatment outcome prediction.
Adapted Large Language Models Can Outperform Medical Experts in Clinical Text Summarization
Venue: arXiv cs.CL 2024
Year: 2024

Analyzing vast textual data and summarizing key information from electronic health records imposes a substantial burden on how clinicians allocate their time. Although large language models (LLMs) have shown promise in natural language processing (NLP), their effectiveness on a diverse range of clinical summarization tasks remains unproven. In this study, we apply adaptation methods to eight LLMs, spanning four distinct clinical summarization tasks: radiology reports, patient questions, progress notes, and doctor-patient dialogue. Quantitative assessments with syntactic, semantic, and conceptual NLP metrics reveal trade-offs between models and adaptation methods. A clinical reader study with ten physicians evaluates summary completeness, correctness, and conciseness; in a majority of cases, summaries from our best adapted LLMs are either equivalent (45%) or superior (36%) compared to summaries from medical experts. The ensuing safety analysis highlights challenges faced by both LLMs and medical experts, as we connect errors to potential medical harm and categorize types of fabricated information. Our research provides evidence of LLMs outperforming medical experts in clinical text summarization across multiple tasks. This suggests that integrating LLMs into clinical workflows could alleviate documentation burden, allowing clinicians to focus more on patient care.
Commercial Anti-Smishing Tools and Their Comparative Effectiveness Against Modern Threats
Venue: arXiv cs.CR 2024
Year: 2024

Smishing, also known as SMS phishing, is a type of fraudulent communication in which an attacker disguises SMS communications to deceive a target into providing their sensitive data. Smishing attacks use a variety of tactics; however, they have a similar goal of stealing money or personally identifying information (PII) from a victim. In response to these attacks, a wide variety of anti-smishing tools have been developed to block or filter these communications. Despite this, the number of phishing attacks continue to rise. In this paper, we developed a test bed for measuring the effectiveness of popular anti-smishing tools against fresh smishing attacks. To collect fresh smishing data, we introduce Smishtank.com, a collaborative online resource for reporting and collecting smishing data sets. The SMS messages were validated by a security expert and an in-depth qualitative analysis was performed on the collected messages to provide further insights. To compare tool effectiveness, we experimented with 20 smishing and benign messages across 3 key segments of the SMS messaging delivery ecosystem. Our results revealed significant room for improvement in all 3 areas against our smishing set. Most anti-phishing apps and bulk messaging services didn't filter smishing messages beyond the carrier blocking. The 2 apps that blocked the most smish also blocked 85-100\% of benign messages. Finally, while carriers did not block any benign messages, they were only able to reach a 25-35\% blocking rate for smishing messages. Our work provides insights into the performance of anti-smishing tools and the roles they play in the message blocking process. This paper would enable the research community and industry to be better informed on the current state of anti-smishing technology on the SMS platform.
Speech-to-Speech Translation with Discrete-Unit-Based Style Transfer
Venue: arXiv cs.SD 2024
Year: 2024

Direct speech-to-speech translation (S2ST) with discrete self-supervised representations has achieved remarkable accuracy, but is unable to preserve the speaker timbre of the source speech. Meanwhile, the scarcity of high-quality speaker-parallel data poses a challenge for learning style transfer during translation. We design an S2ST pipeline with style-transfer capability on the basis of discrete self-supervised speech representations and codec units. The acoustic language model we introduce for style transfer leverages self-supervised in-context learning, acquiring style transfer ability without relying on any speaker-parallel data, thereby overcoming data scarcity. By using extensive training data, our model achieves zero-shot cross-lingual style transfer on previously unseen source languages. Experiments show that our model generates translated speeches with high fidelity and speaker similarity. Audio samples are available at http://stylelm.github.io/ .
Indoor Scene Reconstruction with Fine-Grained Details Using Hybrid Representation and Normal Prior Enhancement
Venue: arXiv cs.CV 2024
Year: 2024

The reconstruction of indoor scenes from multi-view RGB images is challenging due to the coexistence of flat and texture-less regions alongside delicate and fine-grained regions. Recent methods leverage neural radiance fields aided by predicted surface normal priors to recover the scene geometry. These methods excel in producing complete and smooth results for floor and wall areas. However, they struggle to capture complex surfaces with high-frequency structures due to the inadequate neural representation and the inaccurately predicted normal priors. This work aims to reconstruct high-fidelity surfaces with fine-grained details by addressing the above limitations. To improve the capacity of the implicit representation, we propose a hybrid architecture to represent low-frequency and high-frequency regions separately. To enhance the normal priors, we introduce a simple yet effective image sharpening and denoising technique, coupled with a network that estimates the pixel-wise uncertainty of the predicted surface normal vectors. Identifying such uncertainty can prevent our model from being misled by unreliable surface normal supervisions that hinder the accurate reconstruction of intricate geometries. Experiments on the benchmark datasets show that our method outperforms existing methods in terms of reconstruction quality. Furthermore, the proposed method also generalizes well to real-world indoor scenarios captured by our hand-held mobile phones. Our code is publicly available at: https://github.com/yec22/Fine-Grained-Indoor-Recon.
PRE: Vision-Language Prompt Learning with Reparameterization Encoder
Venue: arXiv cs.CV 2024
Year: 2024

Large pre-trained vision-language models such as CLIP have demonstrated great potential in zero-shot transferability to downstream tasks. However, to attain optimal performance, the manual selection of prompts is necessary to improve alignment between the downstream image distribution and the textual class descriptions. This manual prompt engineering is the major challenge for deploying such models in practice since it requires domain expertise and is extremely time-consuming. To avoid non-trivial prompt engineering, recent work Context Optimization (CoOp) introduced the concept of prompt learning to the vision domain using learnable textual tokens. While CoOp can achieve substantial improvements over manual prompts, its learned context is worse generalizable to wider unseen classes within the same dataset. In this work, we present Prompt Learning with Reparameterization Encoder (PRE) - a simple and efficient method that enhances the generalization ability of the learnable prompt to unseen classes while maintaining the capacity to learn Base classes. Instead of directly optimizing the prompts, PRE employs a prompt encoder to reparameterize the input prompt embeddings, enhancing the exploration of task-specific knowledge from few-shot samples. Experiments and extensive ablation studies on 8 benchmarks demonstrate that our approach is an efficient method for prompt learning. Specifically, PRE achieves a notable enhancement of 5.60% in average accuracy on New classes and 3% in Harmonic mean compared to CoOp in the 16-shot setting, all achieved within a good training time.
Bias in News Summarization: Measures, Pitfalls and Corpora
Venue: arXiv cs.CL 2024
Year: 2024

Summarization is an important application of large language models (LLMs). Most previous evaluation of summarization models has focused on their content selection, faithfulness, grammaticality and coherence. However, it is well known that LLMs can reproduce and reinforce harmful social biases. This raises the question: Do biases affect model outputs in a constrained setting like summarization? To help answer this question, we first motivate and introduce a number of definitions for biased behaviours in summarization models, along with practical operationalizations. Since we find that biases inherent to input documents can confound bias analysis in summaries, we propose a method to generate input documents with carefully controlled demographic attributes. This allows us to study summarizer behavior in a controlled setting, while still working with realistic input documents. We measure gender bias in English summaries generated by both purpose-built summarization models and general purpose chat models as a case study. We find content selection in single document summarization to be largely unaffected by gender bias, while hallucinations exhibit evidence of bias. To demonstrate the generality of our approach, we additionally investigate racial bias, including intersectional settings.
Understanding the limitations of self-supervised learning for tabular anomaly detection
Venue: arXiv cs.LG 2024
Year: 2024

While self-supervised learning has improved anomaly detection in computer vision and natural language processing, it is unclear whether tabular data can benefit from it. This paper explores the limitations of self-supervision for tabular anomaly detection. We conduct several experiments spanning various pretext tasks on 26 benchmark datasets to understand why this is the case. Our results confirm representations derived from self-supervision do not improve tabular anomaly detection performance compared to using the raw representations of the data. We show this is due to neural networks introducing irrelevant features, which reduces the effectiveness of anomaly detectors. However, we demonstrate that using a subspace of the neural network's representation can recover performance.
A new method of modeling the multi-stage decision-making process of CRT using machine learning with uncertainty quantification
Venue: arXiv cs.LG 2024
Year: 2024

Aims. The purpose of this study is to create a multi-stage machine learning model to predict cardiac resynchronization therapy (CRT) response for heart failure (HF) patients. This model exploits uncertainty quantification to recommend additional collection of single-photon emission computed tomography myocardial perfusion imaging (SPECT MPI) variables if baseline clinical variables and features from electrocardiogram (ECG) are not sufficient. Methods. 218 patients who underwent rest-gated SPECT MPI were enrolled in this study. CRT response was defined as an increase in left ventricular ejection fraction (LVEF) > 5% at a 6+-1 month follow-up. A multi-stage ML model was created by combining two ensemble models: Ensemble 1 was trained with clinical variables and ECG; Ensemble 2 included Ensemble 1 plus SPECT MPI features. Uncertainty quantification from Ensemble 1 allowed for multi-stage decision-making to determine if the acquisition of SPECT data for a patient is necessary. The performance of the multi-stage model was compared with that of Ensemble models 1 and 2. Results. The response rate for CRT was 55.5% (n = 121) with overall male gender 61.0% (n = 133), an average age of 62.0+-11.8, and LVEF of 27.7+-11.0. The multi-stage model performed similarly to Ensemble 2 (which utilized the additional SPECT data) with AUC of 0.75 vs. 0.77, accuracy of 0.71 vs. 0.69, sensitivity of 0.70 vs. 0.72, and specificity 0.72 vs. 0.65, respectively. However, the multi-stage model only required SPECT MPI data for 52.7% of the patients across all folds. Conclusions. By using rule-based logic stemming from uncertainty quantification, the multi-stage model was able to reduce the need for additional SPECT MPI data acquisition without sacrificing performance.
PoseFix: Correcting 3D Human Poses with Natural Language
Venue: arXiv cs.CV 2024
Year: 2024

Automatically producing instructions to modify one's posture could open the door to endless applications, such as personalized coaching and in-home physical therapy. Tackling the reverse problem (i.e., refining a 3D pose based on some natural language feedback) could help for assisted 3D character animation or robot teaching, for instance. Although a few recent works explore the connections between natural language and 3D human pose, none focus on describing 3D body pose differences. In this paper, we tackle the problem of correcting 3D human poses with natural language. To this end, we introduce the PoseFix dataset, which consists of several thousand paired 3D poses and their corresponding text feedback, that describe how the source pose needs to be modified to obtain the target pose. We demonstrate the potential of this dataset on two tasks: (1) text-based pose editing, that aims at generating corrected 3D body poses given a query pose and a text modifier; and (2) correctional text generation, where instructions are generated based on the differences between two body poses.
POCKET: Pruning Random Convolution Kernels for Time Series Classification from a Feature Selection Perspective
Venue: arXiv cs.LG 2024
Year: 2024

In recent years, two competitive time series classification models, namely, ROCKET and MINIROCKET, have garnered considerable attention due to their low training cost and high accuracy. However, they rely on a large number of random 1-D convolutional kernels to comprehensively capture features, which is incompatible with resource-constrained devices. Despite the development of heuristic algorithms designed to recognize and prune redundant kernels, the inherent time-consuming nature of evolutionary algorithms hinders efficient evaluation. To efficiently prune models, this paper eliminates feature groups contributing minimally to the classifier, thereby discarding the associated random kernels without direct evaluation. To this end, we incorporate both group-level ($l_{2,1}$-norm) and element-level ($l_2$-norm) regularizations to the classifier, formulating the pruning challenge as a group elastic net classification problem. An ADMM-based algorithm is initially introduced to solve the problem, but it is computationally intensive. Building on the ADMM-based algorithm, we then propose our core algorithm, POCKET, which significantly speeds up the process by dividing the task into two sequential stages. In Stage 1, POCKET utilizes dynamically varying penalties to efficiently achieve group sparsity within the classifier, removing features associated with zero weights and their corresponding kernels. In Stage 2, the remaining kernels and features are used to refit a $l_2$-regularized classifier for enhanced performance. Experimental results on diverse time series datasets show that POCKET prunes up to 60% of kernels without a significant reduction in accuracy and performs 11$\times$ faster than its counterparts. Our code is publicly available at https://github.com/ShaowuChen/POCKET.
Wasserstein Distributionally Robust Policy Evaluation and Learning for Contextual Bandits
Venue: arXiv cs.LG 2024
Year: 2024

Off-policy evaluation and learning are concerned with assessing a given policy and learning an optimal policy from offline data without direct interaction with the environment. Often, the environment in which the data are collected differs from the environment in which the learned policy is applied. To account for the effect of different environments during learning and execution, distributionally robust optimization (DRO) methods have been developed that compute worst-case bounds on the policy values assuming that the distribution of the new environment lies within an uncertainty set. Typically, this uncertainty set is defined based on the KL divergence around the empirical distribution computed from the logging dataset. However, the KL uncertainty set fails to encompass distributions with varying support and lacks awareness of the geometry of the distribution support. As a result, KL approaches fall short in addressing practical environment mismatches and lead to over-fitting to worst-case scenarios. To overcome these limitations, we propose a novel DRO approach that employs the Wasserstein distance instead. While Wasserstein DRO is generally computationally more expensive compared to KL DRO, we present a regularized method and a practical (biased) stochastic gradient descent method to optimize the policy efficiently. We also provide a theoretical analysis of the finite sample complexity and iteration complexity for our proposed method. We further validate our approach using a public dataset that was recorded in a randomized stoke trial.