OpenRaiser/Intern-Atlas huggingface dataset:
Charting the Uncharted: The Landscape of Monero Peer-to-Peer Network
Venue: arXiv cs.DC 2025
Year: 2025

The Monero blockchain enables anonymous transactions through advanced cryptography in its peer-to-peer network, which underpins decentralization, security, and trustless interactions. However, privacy measures obscure peer connections, complicating network analysis. This study proposes a method to infer peer connections in Monero's latest protocol version, where timestamp data is unavailable. We collect peerlist data from TCP flows, validate our inference algorithm, and map the network structure. Our results show high accuracy, improving with longer observation periods. This work is the first to reveal connectivity patterns in Monero's updated protocol, providing visualizations and insights into its topology. Our findings enhance the understanding of Monero's P2P network, including the role of supernodes, and highlight potential protocol and security improvements.
AlphaGrad: Non-Linear Gradient Normalization Optimizer
Venue: arXiv cs.LG 2025
Year: 2025

We introduce AlphaGrad, a memory-efficient, conditionally stateless optimizer addressing the memory overhead and hyperparameter complexity of adaptive methods like Adam. AlphaGrad enforces scale invariance via tensor-wise L2 gradient normalization followed by a smooth hyperbolic tangent transformation, $g' = \tanh(α\cdot \tilde{g})$, controlled by a single steepness parameter $α$. Our contributions include: (1) the AlphaGrad algorithm formulation; (2) a formal non-convex convergence analysis guaranteeing stationarity; (3) extensive empirical evaluation on diverse RL benchmarks (DQN, TD3, PPO). Compared to Adam, AlphaGrad demonstrates a highly context-dependent performance profile. While exhibiting instability in off-policy DQN, it provides enhanced training stability with competitive results in TD3 (requiring careful $α$ tuning) and achieves substantially superior performance in on-policy PPO. These results underscore the critical importance of empirical $α$ selection, revealing strong interactions between the optimizer's dynamics and the underlying RL algorithm. AlphaGrad presents a compelling alternative optimizer for memory-constrained scenarios and shows significant promise for on-policy learning regimes where its stability and efficiency advantages can be particularly impactful.
Adaptive Fault-tolerant Control of Underwater Vehicles with Thruster Failures
Venue: arXiv cs.RO 2025
Year: 2025

This paper presents a fault-tolerant control for the trajectory tracking of autonomous underwater vehicles (AUVs) against thruster failures. We formulate faults in AUV thrusters as discrete switching events during a UAV mission, and develop a soft-switching approach in facilitating shift of control strategies across fault scenarios. We mathematically define AUV thruster fault scenarios, and develop the fault-tolerant control that captures the fault scenario via Bayesian approach. Particularly, when the AUV fault type switches from one to another, the developed control captures the fault states and maintains the control by a linear quadratic tracking controller. With the captured fault states by Bayesian approach, we derive the control law by aggregating the control outputs for individual fault scenarios weighted by their Bayesian posterior probability. The developed fault-tolerant control works in an adaptive way and guarantees soft-switching across fault scenarios, and requires no complicated fault detection dedicated to different type of faults. The entailed soft-switching ensures stable AUV trajectory tracking when fault type shifts, which otherwise leads to reduced control under hard-switching control strategies. We conduct numerical simulations with diverse AUV thruster fault settings. The results demonstrate that the proposed control can provide smooth transition across thruster failures, and effectively sustain AUV trajectory tracking control in case of thruster failures and failure shifts.
Vision language models are unreliable at trivial spatial cognition
Venue: arXiv cs.CV 2025
Year: 2025

Vision language models (VLMs) are designed to extract relevant visuospatial information from images. Some research suggests that VLMs can exhibit humanlike scene understanding, while other investigations reveal difficulties in their ability to process relational information. To achieve widespread applicability, VLMs must perform reliably, yielding comparable competence across a wide variety of related tasks. We sought to test how reliable these architectures are at engaging in trivial spatial cognition, e.g., recognizing whether one object is left of another in an uncluttered scene. We developed a benchmark dataset -- TableTest -- whose images depict 3D scenes of objects arranged on a table, and used it to evaluate state-of-the-art VLMs. Results show that performance could be degraded by minor variations of prompts that use logically equivalent descriptions. These analyses suggest limitations in how VLMs may reason about spatial relations in real-world applications. They also reveal novel opportunities for bolstering image caption corpora for more efficient training and testing.
A Markov Chain Monte Carlo Method for Efficient Finite-Length LDPC Code Design
Venue: arXiv cs.IT 2025
Year: 2025

Low-density parity-check (LDPC) codes are among the most prominent error-correction schemes. They find application to fortify various modern storage, communication, and computing systems. Protograph-based (PB) LDPC codes offer many degrees of freedom in the code design and enable fast encoding and decoding. In particular, spatially-coupled (SC) and multi-dimensional (MD) circulant-based codes are PB-LDPC codes with excellent performance. Efficient finite-length (FL) algorithms are required in order to effectively exploit the available degrees of freedom offered by SC partitioning, lifting, and MD relocations. In this paper, we propose a novel Markov chain Monte Carlo (MCMC or MC$^2$) method to perform this FL optimization, addressing the removal of short cycles. While iterating, we draw samples from a defined distribution where the probability decreases as the number of short cycles from the previous iteration increases. We analyze our MC$^2$ method theoretically as we prove the invariance of the Markov chain where each state represents a possible partitioning or lifting arrangement. Via our simulations, we then fit the distribution of the number of cycles resulting from a given arrangement on a Gaussian distribution. We derive estimates for cycle counts that are close to the actual counts. Furthermore, we derive the order of the expected number of iterations required by our approach to reach a local minimum as well as the size of the Markov chain recurrent class. Our approach is compatible with code design techniques based on gradient-descent. Numerical results show that our MC$^2$ method generates SC codes with remarkably less number of short cycles compared with the current state-of-the-art. Moreover, to reach the same number of cycles, our method requires orders of magnitude less overall time compared with the available literature methods.
PHYBench: Holistic Evaluation of Physical Perception and Reasoning in Large Language Models
Venue: arXiv cs.CL 2025
Year: 2025

Current benchmarks for evaluating the reasoning capabilities of Large Language Models (LLMs) face significant limitations: task oversimplification, data contamination, and flawed evaluation items. These deficiencies necessitate more rigorous assessment methods. To address these limitations, we introduce PHYBench, a benchmark of 500 original physics problems ranging from high school to Physics Olympiad difficulty. PHYBench addresses data contamination through original content and employs a systematic curation pipeline to eliminate flawed items. Evaluations show that PHYBench activates more tokens and provides stronger differentiation between reasoning models compared to other baselines like AIME 2024, OlympiadBench and GPQA. Even the best-performing model, Gemini 2.5 Pro, achieves only 36.9% accuracy compared to human experts' 61.9%. To further enhance evaluation precision, we introduce the Expression Edit Distance (EED) Score for mathematical expression assessment, which improves sample efficiency by 204% over binary scoring. Moreover, PHYBench effectively elicits multi-step and multi-condition reasoning, providing a platform for examining models' reasoning robustness, preferences, and deficiencies. The benchmark results and dataset are publicly available at https://www.phybench.cn/.
MR. Video: "MapReduce" is the Principle for Long Video Understanding
Venue: arXiv cs.CV 2025
Year: 2025

We propose MR. Video, an agentic long video understanding framework that demonstrates the simple yet effective MapReduce principle for processing long videos: (1) Map: independently and densely perceiving short video clips, and (2) Reduce: jointly aggregating information from all clips. Compared with sequence-to-sequence vision-language models (VLMs), MR. Video performs detailed short video perception without being limited by context length. Compared with existing video agents that typically rely on sequential key segment selection, the Map operation enables simpler and more scalable sequence parallel perception of short video segments. Its Reduce step allows for more comprehensive context aggregation and reasoning, surpassing explicit key segment retrieval. This MapReduce principle is applicable to both VLMs and video agents, and we use LLM agents to validate its effectiveness. In practice, MR. Video employs two MapReduce stages: (A) Captioning: generating captions for short video clips (map), then standardizing repeated characters and objects into shared names (reduce); (B) Analysis: for each user question, analyzing relevant information from individual short videos (map), and integrating them into a final answer (reduce). MR. Video achieves over 10% accuracy improvement on the challenging LVBench compared to state-of-the-art VLMs and video agents. Code is available at: https://github.com/ziqipang/MR-Video
Launching Insights: A Pilot Study on Leveraging Real-World Observational Data from the Mayo Clinic Platform to Advance Clinical Research
Venue: arXiv cs.CY 2025
Year: 2025

Backgrounds: Artificial intelligence (AI) is transforming healthcare, yet translating AI models from theoretical frameworks to real-world clinical applications remains challenging. The Mayo Clinic Platform (MCP) was established to address these challenges by providing a scalable ecosystem that integrates real-world multiple modalities data from multiple institutions, advanced analytical tools, and secure computing environments to support clinical research and AI development. Methods: In this study, we conducted four research projects leveraging MCP's data infrastructure and analytical capabilities to demonstrate its potential in facilitating real-world evidence generation and AI-driven clinical insights. Utilizing MCP's tools and environment, we facilitated efficient cohort identification, data extraction, and subsequent statistical or AI-powered analyses. Results: The results underscore MCP's role in accelerating translational research by offering de-identified, standardized real-world data and facilitating AI model validation across diverse healthcare settings. Compared to Mayo's internal Electronic Health Record (EHR) data, MCP provides broader accessibility, enhanced data standardization, and multi-institutional integration, making it a valuable resource for both internal and external researchers. Conclusion: Looking ahead, MCP is well-positioned to transform clinical research through its scalable ecosystem, effectively bridging the divide between AI innovation and clinical deployment. Future investigations will build upon this foundation, further exploring MCP's capacity to advance precision medicine and enhance patient outcomes.
A Data-Centric Approach for Safe and Secure Large Language Models against Threatening and Toxic Content
Venue: arXiv cs.CR 2025
Year: 2025

Large Language Models (LLM) have made remarkable progress, but concerns about potential biases and harmful content persist. To address these apprehensions, we introduce a practical solution for ensuring LLM's safe and ethical use. Our novel approach focuses on a post-generation correction mechanism, the BART-Corrective Model, which adjusts generated content to ensure safety and security. Unlike relying solely on model fine-tuning or prompt engineering, our method provides a robust data-centric alternative for mitigating harmful content. We demonstrate the effectiveness of our approach through experiments on multiple toxic datasets, which show a significant reduction in mean toxicity and jail-breaking scores after integration. Specifically, our results show a reduction of 15% and 21% in mean toxicity and jail-breaking scores with GPT-4, a substantial reduction of 28% and 5% with PaLM2, a reduction of approximately 26% and 23% with Mistral-7B, and a reduction of 11.1% and 19% with Gemma-2b-it. These results demonstrate the potential of our approach to improve the safety and security of LLM, making them more suitable for real-world applications.
Active Learning Methods for Efficient Data Utilization and Model Performance Enhancement
Venue: arXiv cs.LG 2025
Year: 2025

In the era of data-driven intelligence, the paradox of data abundance and annotation scarcity has emerged as a critical bottleneck in the advancement of machine learning. This paper gives a detailed overview of Active Learning (AL), which is a strategy in machine learning that helps models achieve better performance using fewer labeled examples. It introduces the basic concepts of AL and discusses how it is used in various fields such as computer vision, natural language processing, transfer learning, and real-world applications. The paper focuses on important research topics such as uncertainty estimation, handling of class imbalance, domain adaptation, fairness, and the creation of strong evaluation metrics and benchmarks. It also shows that learning methods inspired by humans and guided by questions can improve data efficiency and help models learn more effectively. In addition, this paper talks about current challenges in the field, including the need to rebuild trust, ensure reproducibility, and deal with inconsistent methodologies. It points out that AL often gives better results than passive learning, especially when good evaluation measures are used. This work aims to be useful for both researchers and practitioners by providing key insights and proposing directions for future progress in active learning.
Towards responsible AI for education: Hybrid human-AI to confront the Elephant in the room
Venue: arXiv cs.CY 2025
Year: 2025

Despite significant advancements in AI-driven educational systems and ongoing calls for responsible AI for education, several critical issues remain unresolved -- acting as the elephant in the room within AI in education, learning analytics, educational data mining, learning sciences, and educational psychology communities. This critical analysis identifies and examines nine persistent challenges that continue to undermine the fairness, transparency, and effectiveness of current AI methods and applications in education. These include: (1) the lack of clarity around what AI for education truly means -- often ignoring the distinct purposes, strengths, and limitations of different AI families -- and the trend of equating it with domain-agnostic, company-driven large language models; (2) the widespread neglect of essential learning processes such as motivation, emotion, and (meta)cognition in AI-driven learner modelling and their contextual nature; (3) limited integration of domain knowledge and lack of stakeholder involvement in AI design and development; (4) continued use of non-sequential machine learning models on temporal educational data; (5) misuse of non-sequential metrics to evaluate sequential models; (6) use of unreliable explainable AI methods to provide explanations for black-box models; (7) ignoring ethical guidelines in addressing data inconsistencies during model training; (8) use of mainstream AI methods for pattern discovery and learning analytics without systematic benchmarking; and (9) overemphasis on global prescriptions while overlooking localised, student-specific recommendations. Supported by theoretical and empirical research, we demonstrate how hybrid AI methods -- specifically neural-symbolic AI -- can address the elephant in the room and serve as the foundation for responsible, trustworthy AI systems in education.
ReGraph: A Tool for Binary Similarity Identification
Venue: arXiv cs.CR 2025
Year: 2025

Binary Code Similarity Detection (BCSD) is not only essential for security tasks such as vulnerability identification but also for code copying detection, yet it remains challenging due to binary stripping and diverse compilation environments. Existing methods tend to adopt increasingly complex neural networks for better accuracy performance. The computation time increases with the complexity. Even with powerful GPUs, the treatment of large-scale software becomes time-consuming. To address these issues, we present a framework called ReGraph to efficiently compare binary code functions across architectures and optimization levels. Our evaluation with public datasets highlights that ReGraph exhibits a significant speed advantage, performing 700 times faster than Natural Language Processing (NLP)-based methods while maintaining comparable accuracy results with respect to the state-of-the-art models.
General Post-Processing Framework for Fairness Adjustment of Machine Learning Models
Venue: arXiv cs.LG 2025
Year: 2025

As machine learning increasingly influences critical domains such as credit underwriting, public policy, and talent acquisition, ensuring compliance with fairness constraints is both a legal and ethical imperative. This paper introduces a novel framework for fairness adjustments that applies to diverse machine learning tasks, including regression and classification, and accommodates a wide range of fairness metrics. Unlike traditional approaches categorized as pre-processing, in-processing, or post-processing, our method adapts in-processing techniques for use as a post-processing step. By decoupling fairness adjustments from the model training process, our framework preserves model performance on average while enabling greater flexibility in model development. Key advantages include eliminating the need for custom loss functions, enabling fairness tuning using different datasets, accommodating proprietary models as black-box systems, and providing interpretable insights into the fairness adjustments. We demonstrate the effectiveness of this approach by comparing it to Adversarial Debiasing, showing that our framework achieves a comparable fairness/accuracy tradeoff on real-world datasets.
Accurate and generalizable protein-ligand binding affinity prediction with geometric deep learning
Venue: arXiv cs.CE 2025
Year: 2025

Protein-ligand binding complexes are ubiquitous and essential to life. Protein-ligand binding affinity prediction (PLA) quantifies the binding strength between ligands and proteins, providing crucial insights for discovering and designing potential candidate ligands. While recent advances have been made in predicting protein-ligand complex structures, existing algorithms for interaction and affinity prediction suffer from a sharp decline in performance when handling ligands bound with novel unseen proteins. We propose IPBind, a geometric deep learning-based computational method, enabling robust predictions by leveraging interatomic potential between complex's bound and unbound status. Experimental results on widely used binding affinity prediction benchmarks demonstrate the effectiveness and universality of IPBind. Meanwhile, it provides atom-level insights into prediction. This work highlights the advantage of leveraging machine learning interatomic potential for predicting protein-ligand binding affinity.
Learning Energy-Based Generative Models via Potential Flow: A Variational Principle Approach to Probability Density Homotopy Matching
Venue: arXiv cs.LG 2025
Year: 2025

Energy-based models (EBMs) are a powerful class of probabilistic generative models due to their flexibility and interpretability. However, relationships between potential flows and explicit EBMs remain underexplored, while contrastive divergence training via implicit Markov chain Monte Carlo (MCMC) sampling is often unstable and expensive in high-dimensional settings. In this paper, we propose Variational Potential Flow Bayes (VPFB), a new energy-based generative framework that eliminates the need for implicit MCMC sampling and does not rely on auxiliary networks or cooperative training. VPFB learns an energy-parameterized potential flow by constructing a flow-driven density homotopy that is matched to the data distribution through a variational loss minimizing the Kullback-Leibler divergence between the flow-driven and marginal homotopies. This principled formulation enables robust and efficient generative modeling while preserving the interpretability of EBMs. Experimental results on image generation, interpolation, out-of-distribution detection, and compositional generation confirm the effectiveness of VPFB, showing that our method performs competitively with existing approaches in terms of sample quality and versatility across diverse generative modeling tasks.
CLIRudit: Cross-Lingual Information Retrieval of Scientific Documents
Venue: arXiv cs.IR 2025
Year: 2025

Cross-lingual information retrieval (CLIR) helps users find documents in languages different from their queries. This is especially important in academic search, where key research is often published in non-English languages. We present CLIRudit, a novel English-French academic retrieval dataset built from Érudit, a Canadian publishing platform. Using multilingual metadata, we pair English author-written keywords as queries with non-English abstracts as target documents, a method that can be applied to other languages and repositories. We benchmark various first-stage sparse and dense retrievers, with and without machine translation. We find that dense embeddings without translation perform nearly as well as systems using machine translation, that translating documents is generally more effective than translating queries, and that sparse retrievers with document translation remain competitive while offering greater efficiency. Along with releasing the first English-French academic retrieval dataset, we provide a reproducible benchmarking method to improve access to non-English scholarly content.
An Automated Pipeline for Few-Shot Bird Call Classification: A Case Study with the Tooth-Billed Pigeon
Venue: arXiv cs.LG 2025
Year: 2025

This paper presents an automated one-shot bird call classification pipeline designed for rare species absent from large publicly available classifiers like BirdNET and Perch. While these models excel at detecting common birds with abundant training data, they lack options for species with only 1-3 known recordings-a critical limitation for conservationists monitoring the last remaining individuals of endangered birds. To address this, we leverage the embedding space of large bird classification networks and develop a classifier using cosine similarity, combined with filtering and denoising preprocessing techniques, to optimize detection with minimal training data. We evaluate various embedding spaces using clustering metrics and validate our approach in both a simulated scenario with Xeno-Canto recordings and a real-world test on the critically endangered tooth-billed pigeon (Didunculus strigirostris), which has no existing classifiers and only three confirmed recordings. The final model achieved 1.0 recall and 0.95 accuracy in detecting tooth-billed pigeon calls, making it practical for use in the field. This open-source system provides a practical tool for conservationists seeking to detect and monitor rare species on the brink of extinction.