OpenRaiser/Intern-Atlas huggingface dataset:
SPA-RL: Reinforcing LLM Agents via Stepwise Progress Attribution
Venue: arXiv cs.CL 2025
Year: 2025

Reinforcement learning (RL) holds significant promise for training LLM agents to handle complex, goal-oriented tasks that require multi-step interactions with external environments. However, a critical challenge when applying RL to these agentic tasks arises from delayed rewards: feedback signals are typically available only after the entire task is completed. This makes it non-trivial to assign delayed rewards to earlier actions, providing insufficient guidance regarding environmental constraints and hindering agent training. In this work, we draw on the insight that the ultimate completion of a task emerges from the cumulative progress an agent makes across individual steps. We propose Stepwise Progress Attribution (SPA), a general reward redistribution framework that decomposes the final reward into stepwise contributions, each reflecting its incremental progress toward overall task completion. To achieve this, we train a progress estimator that accumulates stepwise contributions over a trajectory to match the task completion. During policy optimization, we combine the estimated per-step contribution with a grounding signal for actions executed in the environment as the fine-grained, intermediate reward for effective agent training. Extensive experiments on common agent benchmarks (including Webshop, ALFWorld, and VirtualHome) demonstrate that SPA consistently outperforms the state-of-the-art method in both success rate (+2.5\% on average) and grounding accuracy (+1.9\% on average). Further analyses demonstrate that our method remarkably provides more effective intermediate rewards for RL training. Our code is available at https://github.com/WangHanLinHenry/SPA-RL-Agent.
MSEarth: A Multimodal Scientific Dataset and Benchmark for Phenomena Uncovering in Earth Science
Venue: arXiv cs.AI 2025
Year: 2025

The rapid advancement of multimodal large language models (MLLMs) has unlocked new opportunities to tackle complex scientific challenges. Despite this progress, their application in addressing earth science problems, especially at the graduate level, remains underexplored. A significant barrier is the absence of benchmarks that capture the depth and contextual complexity of geoscientific reasoning. Current benchmarks often rely on synthetic datasets or simplistic figure-caption pairs, which do not adequately reflect the intricate reasoning and domain-specific insights required for real-world scientific applications. To address these gaps, we introduce MSEarth, a multimodal scientific benchmark curated from high-quality, open-access scientific publications. MSEarth encompasses the five major spheres of Earth science: atmosphere, cryosphere, hydrosphere, lithosphere, and biosphere, featuring over 289K figures with refined captions. These captions are crafted from the original figure captions and enriched with discussions and reasoning from the papers, ensuring the benchmark captures the nuanced reasoning and knowledge-intensive content essential for advanced scientific tasks. MSEarth supports a variety of tasks, including scientific figure captioning, multiple choice questions, and open-ended reasoning challenges. By bridging the gap in graduate-level benchmarks, MSEarth provides a scalable and high-fidelity resource to enhance the development and evaluation of MLLMs in scientific reasoning. The benchmark is publicly available to foster further research and innovation in this field.
'Hello, World!': Making GNNs Talk with LLMs
Venue: arXiv cs.LG 2025
Year: 2025

While graph neural networks (GNNs) have shown remarkable performance across diverse graph-related tasks, their high-dimensional hidden representations render them black boxes. In this work, we propose Graph Lingual Network (GLN), a GNN built on large language models (LLMs), with hidden representations in the form of human-readable text. Through careful prompt design, GLN incorporates not only the message passing module of GNNs but also advanced GNN techniques, including graph attention and initial residual connection. The comprehensibility of GLN's hidden representations enables an intuitive analysis of how node representations change (1) across layers and (2) under advanced GNN techniques, shedding light on the inner workings of GNNs. Furthermore, we demonstrate that GLN achieves strong zero-shot performance on node classification and link prediction, outperforming existing LLM-based baseline methods.
UQLegalAI@COLIEE2025: Advancing Legal Case Retrieval with Large Language Models and Graph Neural Networks
Venue: arXiv cs.IR 2025
Year: 2025

Legal case retrieval plays a pivotal role in the legal domain by facilitating the efficient identification of relevant cases, supporting legal professionals and researchers to propose legal arguments and make informed decision-making. To improve retrieval accuracy, the Competition on Legal Information Extraction and Entailment (COLIEE) is held annually, offering updated benchmark datasets for evaluation. This paper presents a detailed description of CaseLink, the method employed by UQLegalAI, the second highest team in Task 1 of COLIEE 2025. The CaseLink model utilises inductive graph learning and Global Case Graphs to capture the intrinsic case connectivity to improve the accuracy of legal case retrieval. Specifically, a large language model specialized in text embedding is employed to transform legal texts into embeddings, which serve as the feature representations of the nodes in the constructed case graph. A new contrastive objective, incorporating a regularization on the degree of case nodes, is proposed to leverage the information within the case reference relationship for model optimization. The main codebase used in our method is based on an open-sourced repo of CaseLink: https://github.com/yanran-tang/CaseLink.
Can Agents Fix Agent Issues?
Venue: arXiv cs.AI 2025
Year: 2025

LLM-based agent systems are emerging as a new software paradigm and have been widely adopted across diverse domains such as medicine, robotics, and programming. However, maintaining these systems requires substantial effort, as they are inevitably prone to bugs and continually evolve to meet changing external requirements. Therefore, automatically resolving agent issues (i.e., bug reports or feature requests) is a crucial and challenging task. While recent software engineering (SE) agents (e.g., SWE-agent) have shown promise in addressing issues in traditional software systems, it remains unclear how effectively they can resolve real-world issues in agent systems, which differ significantly from traditional software. To fill this gap, we first manually analyze 201 real-world agent issues and identify common categories of agent issues. We then spend 500 person-hours constructing AgentIssue-Bench, a reproducible benchmark comprising 50 agent issue resolution tasks (each with an executable environment and failure-triggering tests). We further evaluate state-of-the-art SE agents on AgentIssue-Bench and reveal their limited effectiveness (i.e., with only 0.67% - 4.67% resolution rates). These results underscore the unique challenges of maintaining agent systems compared to traditional software, highlighting the need for further research to develop advanced SE agents for resolving agent issues. Data and code are available at https://github.com/alfin06/AgentIssue-Bench.
Understand, Think, and Answer: Advancing Visual Reasoning with Large Multimodal Models
Venue: arXiv cs.CV 2025
Year: 2025

Large Multimodal Models (LMMs) have recently demonstrated remarkable visual understanding performance on both vision-language and vision-centric tasks. However, they often fall short in integrating advanced, task-specific capabilities for compositional reasoning, which hinders their progress toward truly competent general vision models. To address this, we present a unified visual reasoning mechanism that enables LMMs to solve complicated compositional problems by leveraging their intrinsic capabilities (e.g. grounding and visual understanding capabilities). Different from the previous shortcut learning mechanism, our approach introduces a human-like understanding-thinking-answering process, allowing the model to complete all steps in a single pass forwarding without the need for multiple inferences or external tools. This design bridges the gap between foundational visual capabilities and general question answering, encouraging LMMs to generate faithful and traceable responses for complex visual reasoning. Meanwhile, we curate 334K visual instruction samples covering both general scenes and text-rich scenes and involving multiple foundational visual capabilities. Our trained model, Griffon-R, has the ability of end-to-end automatic understanding, self-thinking, and reasoning answers. Comprehensive experiments show that Griffon-R not only achieves advancing performance on complex visual reasoning benchmarks including VSR and CLEVR, but also enhances multimodal capabilities across various benchmarks like MMBench and ScienceQA. Data, models, and codes will be release at https://github.com/jefferyZhan/Griffon/tree/master/Griffon-R soon.
Polarforming for Wireless Networks: Opportunities and Challenges
Venue: arXiv cs.IT 2025
Year: 2025

Polarforming emerges as a promising technique for manipulating the polarization of electromagnetic (EM) waves by shaping the polarization of an antenna into a desired state. By dynamically adjusting antenna polarization, polarforming enables real-time polarization matching or mismatching with received EM waves, thereby leveraging polarization degrees of freedom (DoFs) to enhance wireless communication performance. In this article, we first present an overview of the fundamental principles and design approaches underlying the polarforming technique. We then analyze the key advantages of polarforming, including hardware cost reduction, depolarization mitigation, channel adaptation, signal power enhancement, and interference suppression. Furthermore, we explore promising applications of polarforming for next-generation wireless networks. Numerical case studies demonstrate the substantial performance gains of polarforming over conventional fixed-polarization antenna (FPA) systems, along with a discussion of implementation challenges to motivate future research.
Practical estimation of the optimal classification error with soft labels and calibration
Venue: arXiv cs.LG 2025
Year: 2025

While the performance of machine learning systems has experienced significant improvement in recent years, relatively little attention has been paid to the fundamental question: to what extent can we improve our models? This paper provides a means of answering this question in the setting of binary classification, which is practical and theoretically supported. We extend a previous work that utilizes soft labels for estimating the Bayes error, the optimal error rate, in two important ways. First, we theoretically investigate the properties of the bias of the hard-label-based estimator discussed in the original work. We reveal that the decay rate of the bias is adaptive to how well the two class-conditional distributions are separated, and it can decay significantly faster than the previous result suggested as the number of hard labels per instance grows. Second, we tackle a more challenging problem setting: estimation with corrupted soft labels. One might be tempted to use calibrated soft labels instead of clean ones. However, we reveal that calibration guarantee is not enough, that is, even perfectly calibrated soft labels can result in a substantially inaccurate estimate. Then, we show that isotonic calibration can provide a statistically consistent estimator under an assumption weaker than that of the previous work. Our method is instance-free, i.e., we do not assume access to any input instances. This feature allows it to be adopted in practical scenarios where the instances are not available due to privacy issues. Experiments with synthetic and real-world datasets show the validity of our methods and theory.
Non-invasive maturity assessment of iPSC-CMs based on optical maturity characteristics using interpretable AI
Venue: arXiv cs.LG 2025
Year: 2025

Human induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs) are an important resource for the identification of new therapeutic targets and cardioprotective drugs. After differentiation iPSC-CMs show an immature, fetal-like phenotype. Cultivation of iPSC-CMs in lipid-supplemented maturation medium (MM) strongly enhances their structural, metabolic and functional phenotype. Nevertheless, assessing iPSC-CM maturation state remains challenging as most methods are time consuming and go in line with cell damage or loss of the sample. To address this issue, we developed a non-invasive approach for automated classification of iPSC-CM maturity through interpretable artificial intelligence (AI)-based analysis of beat characteristics derived from video-based motion analysis. In a prospective study, we evaluated 230 video recordings of early-state, immature iPSC-CMs on day 21 after differentiation (d21) and more mature iPSC-CMs cultured in MM (d42, MM). For each recording, 10 features were extracted using Maia motion analysis software and entered into a support vector machine (SVM). The hyperparameters of the SVM were optimized in a grid search on 80 % of the data using 5-fold cross-validation. The optimized model achieved an accuracy of 99.5 $\pm$ 1.1 % on a hold-out test set. Shapley Additive Explanations (SHAP) identified displacement, relaxation-rise time and beating duration as the most relevant features for assessing maturity level. Our results suggest the use of non-invasive, optical motion analysis combined with AI-based methods as a tool to assess iPSC-CMs maturity and could be applied before performing functional readouts or drug testing. This may potentially reduce the variability and improve the reproducibility of experimental studies.
AdParaphrase v2.0: Generating Attractive Ad Texts Using a Preference-Annotated Paraphrase Dataset
Venue: arXiv cs.CL 2025
Year: 2025

Identifying factors that make ad text attractive is essential for advertising success. This study proposes AdParaphrase v2.0, a dataset for ad text paraphrasing, containing human preference data, to enable the analysis of the linguistic factors and to support the development of methods for generating attractive ad texts. Compared with v1.0, this dataset is 20 times larger, comprising 16,460 ad text paraphrase pairs, each annotated with preference data from ten evaluators, thereby enabling a more comprehensive and reliable analysis. Through the experiments, we identified multiple linguistic features of engaging ad texts that were not observed in v1.0 and explored various methods for generating attractive ad texts. Furthermore, our analysis demonstrated the relationships between human preference and ad performance, and highlighted the potential of reference-free metrics based on large language models for evaluating ad text attractiveness. The dataset is publicly available at: https://github.com/CyberAgentAILab/AdParaphrase-v2.0.
HAD: Hybrid Architecture Distillation Outperforms Teacher in Genomic Sequence Modeling
Venue: arXiv cs.LG 2025
Year: 2025

Inspired by the great success of Masked Language Modeling (MLM) in the natural language domain, the paradigm of self-supervised pre-training and fine-tuning has also achieved remarkable progress in the field of DNA sequence modeling. However, previous methods often relied on massive pre-training data or large-scale base models with huge parameters, imposing a significant computational burden. To address this, many works attempted to use more compact models to achieve similar outcomes but still fell short by a considerable margin. In this work, we propose a Hybrid Architecture Distillation (HAD) approach, leveraging both distillation and reconstruction tasks for more efficient and effective pre-training. Specifically, we employ the NTv2-500M as the teacher model and devise a grouping masking strategy to align the feature embeddings of visible tokens while concurrently reconstructing the invisible tokens during MLM pre-training. To validate the effectiveness of our proposed method, we conducted comprehensive experiments on the Nucleotide Transformer Benchmark and Genomic Benchmark. Compared to models with similar parameters, our model achieved excellent performance. More surprisingly, it even surpassed the distillation ceiling-teacher model on some sub-tasks, which is more than 500 $\times$ larger. Lastly, we utilize t-SNE for more intuitive visualization, which shows that our model can gain a sophisticated understanding of the intrinsic representation pattern in genomic sequences.
Static Communication Analysis for Hardware Design
Venue: arXiv cs.AR 2025
Year: 2025

Hardware acceleration of algorithms is an effective method for improving performance in high-demand computational tasks. However, developing hardware designs for such acceleration fundamentally differs from software development, as it requires a deep understanding of the highly parallel nature of the hardware architecture. In this paper, we present a framework for the static analysis of communication within datapath architectures designed for field-programmable gate arrays (FPGAs). Our framework aims to enhance hardware design and optimization by providing insights into communication patterns within the architecture, which are essential for ensuring efficient data handling.
Respond to Change with Constancy: Instruction-tuning with LLM for Non-I.I.D. Network Traffic Classification
Venue: arXiv cs.CR 2025
Year: 2025

Encrypted traffic classification is highly challenging in network security due to the need for extracting robust features from content-agnostic traffic data. Existing approaches face critical issues: (i) Distribution drift, caused by reliance on the closedworld assumption, limits adaptability to realworld, shifting patterns; (ii) Dependence on labeled data restricts applicability where such data is scarce or unavailable. Large language models (LLMs) have demonstrated remarkable potential in offering generalizable solutions across a wide range of tasks, achieving notable success in various specialized fields. However, their effectiveness in traffic analysis remains constrained by challenges in adapting to the unique requirements of the traffic domain. In this paper, we introduce a novel traffic representation model named Encrypted Traffic Out-of-Distribution Instruction Tuning with LLM (ETooL), which integrates LLMs with knowledge of traffic structures through a self-supervised instruction tuning paradigm. This framework establishes connections between textual information and traffic interactions. ETooL demonstrates more robust classification performance and superior generalization in both supervised and zero-shot traffic classification tasks. Notably, it achieves significant improvements in F1 scores: APP53 (I.I.D.) to 93.19%(6.62%) and 92.11%(4.19%), APP53 (O.O.D.) to 74.88%(18.17%) and 72.13%(15.15%), and ISCX-Botnet (O.O.D.) to 95.03%(9.16%) and 81.95%(12.08%). Additionally, we construct NETD, a traffic dataset designed to support dynamic distributional shifts, and use it to validate ETooL's effectiveness under varying distributional conditions. Furthermore, we evaluate the efficiency gains achieved through ETooL's instruction tuning approach.
In Context Learning with Vision Transformers: Case Study
Venue: arXiv cs.CV 2025
Year: 2025

Large transformer models have been shown to be capable of performing in-context learning. By using examples in a prompt as well as a query, they are capable of performing tasks such as few-shot, one-shot, or zero-shot learning to output the corresponding answer to this query. One area of interest to us is that these transformer models have been shown to be capable of learning the general class of certain functions, such as linear functions and small 2-layer neural networks, on random data (Garg et al, 2023). We aim to extend this to the image space to analyze their capability to in-context learn more complex functions on the image space, such as convolutional neural networks and other methods.
Fork-Merge Decoding: Enhancing Multimodal Understanding in Audio-Visual Large Language Models
Venue: arXiv cs.CV 2025
Year: 2025

The goal of this work is to enhance balanced multimodal understanding in audio-visual large language models (AV-LLMs) by addressing modality bias without additional training. In current AV-LLMs, audio and video features are typically processed jointly in the decoder. While this strategy facilitates unified multimodal understanding, it may introduce modality bias, where the model tends to over-rely on one modality due to imbalanced training signals. To mitigate this, we propose Fork-Merge Decoding (FMD), a simple yet effective inference-time strategy that requires no additional training or architectural modifications. FMD first performs modality-specific reasoning by processing audio-only and video-only inputs through the early decoder layers (fork), and then merges the resulting hidden states for joint reasoning in the remaining layers (merge). This separation allows each modality to be emphasized in the early stages while encouraging balanced contributions during integration. We validate our method on three representative AV-LLMs-VideoLLaMA2, video-SALMONN, and Qwen2.5-Omni-using three benchmark datasets. Experimental results show consistent gains in audio, video, and audio-visual reasoning tasks, highlighting the effectiveness of inference-time interventions for robust and efficient multimodal understanding.
Generalized Coordination of Partially Cooperative Urban Traffic
Venue: arXiv cs.RO 2025
Year: 2025

Vehicle-to-anything connectivity, especially for autonomous vehicles, promises to increase passenger comfort and safety of road traffic, for example, by sharing perception and driving intention. Cooperative maneuver planning uses connectivity to enhance traffic efficiency, which has, so far, been mainly considered for automated intersection management. In this article, we present a novel cooperative maneuver planning approach that is generalized to various situations found in urban traffic. Our framework handles challenging mixed traffic, that is, traffic comprising both cooperative connected vehicles and other vehicles at any distribution. Our solution is based on an optimization approach accompanied by an efficient heuristic method for high-load scenarios. We extensively evaluate the proposed planer in a distinctly realistic simulation framework and show significant efficiency gains already at a cooperation rate of 40%. Traffic throughput increases, while the average waiting time and the number of stopped vehicles are reduced, without impacting traffic safety.
Generalizable Heuristic Generation Through Large Language Models with Meta-Optimization
Venue: arXiv cs.LG 2025
Year: 2025

Heuristic design with large language models (LLMs) has emerged as a promising approach for tackling combinatorial optimization problems (COPs). However, existing approaches often rely on manually predefined evolutionary computation (EC) optimizers and single-task training schemes, which may constrain the exploration of diverse heuristic algorithms and hinder the generalization of the resulting heuristics. To address these issues, we propose Meta-Optimization of Heuristics (MoH), a novel framework that operates at the optimizer level, discovering effective optimizers through the principle of meta-learning. Specifically, MoH leverages LLMs to iteratively refine a meta-optimizer that autonomously constructs diverse optimizers through (self-)invocation, thereby eliminating the reliance on a predefined EC optimizer. These constructed optimizers subsequently evolve heuristics for downstream tasks, enabling broader heuristic exploration. Moreover, MoH employs a multi-task training scheme to promote its generalization capability. Experiments on classic COPs demonstrate that MoH constructs an effective and interpretable meta-optimizer, achieving state-of-the-art performance across various downstream tasks, particularly in cross-size settings.