OpenRaiser/Intern-Atlas huggingface dataset:
RLBayes: a Bayesian Network Structure Learning Algorithm via Reinforcement Learning-Based Search Strategy
Venue: arXiv cs.LG 2025
Year: 2025

The score-based structure learning of Bayesian network (BN) is an effective way to learn BN models, which are regarded as some of the most compelling probabilistic graphical models in the field of representation and reasoning under uncertainty. However, the search space of structure learning grows super-exponentially as the number of variables increases, which makes BN structure learning an NP-hard problem, as well as a combination optimization problem (COP). Despite the successes of many heuristic methods on it, the results of the structure learning of BN are usually unsatisfactory. Inspired by Q-learning, in this paper, a Bayesian network structure learning algorithm via reinforcement learning-based (RL-based) search strategy is proposed, namely RLBayes. The method borrows the idea of RL and tends to record and guide the learning process by a dynamically maintained Q-table. By creating and maintaining the dynamic Q-table, RLBayes achieve storing the unlimited search space within limited space, thereby achieving the structure learning of BN via Q-learning. Not only is it theoretically proved that RLBayes can converge to the global optimal BN structure, but also it is experimentally proved that RLBayes has a better effect than almost all other heuristic search algorithms.
Learning symmetries in datasets
Venue: arXiv cs.LG 2025
Year: 2025

We investigate how symmetries present in datasets affect the structure of the latent space learned by Variational Autoencoders (VAEs). By training VAEs on data originating from simple mechanical systems and particle collisions, we analyze the organization of the latent space through a relevance measure that identifies the most meaningful latent directions. We show that when symmetries or approximate symmetries are present, the VAE self-organizes its latent space, effectively compressing the data along a reduced number of latent variables. This behavior captures the intrinsic dimensionality determined by the symmetry constraints and reveals hidden relations among the features. Furthermore, we provide a theoretical analysis of a simple toy model, demonstrating how, under idealized conditions, the latent space aligns with the symmetry directions of the data manifold. We illustrate these findings with examples ranging from two-dimensional datasets with $O(2)$ symmetry to realistic datasets from electron-positron and proton-proton collisions. Our results highlight the potential of unsupervised generative models to expose underlying structures in data and offer a novel approach to symmetry discovery without explicit supervision.
The 1st Solution for 4th PVUW MeViS Challenge: Unleashing the Potential of Large Multimodal Models for Referring Video Segmentation
Venue: arXiv cs.CV 2025
Year: 2025

Motion expression video segmentation is designed to segment objects in accordance with the input motion expressions. In contrast to the conventional Referring Video Object Segmentation (RVOS), it places emphasis on motion as well as multi-object expressions, making it more arduous. Recently, Large Multimodal Models (LMMs) have begun to shine in RVOS due to their powerful vision-language perception capabilities. In this work, we propose a simple and effective inference optimization method to fully unleash the potential of LMMs in referring video segmentation. Firstly, we use Sa2VA as our baseline, which is a unified LMM for dense grounded understanding of both images and videos. Secondly, we uniformly sample the video frames during the inference process to enhance the model's understanding of the entire video. Finally, we integrate the results of multiple expert models to mitigate the erroneous predictions of a single model. Our solution achieved 61.98% J&F on the MeViS test set and ranked 1st place in the 4th PVUW Challenge MeViS Track at CVPR 2025.
MSA-UNet3+: Multi-Scale Attention UNet3+ with New Supervised Prototypical Contrastive Loss for Coronary DSA Image Segmentation
Venue: arXiv cs.CV 2025
Year: 2025

Accurate segmentation of coronary Digital Subtraction Angiography images is essential to diagnose and treat coronary artery diseases. Despite advances in deep learning, challenges such as high intra-class variance and class imbalance limit precise vessel delineation. Most existing approaches for coronary DSA segmentation cannot address these issues. Also, existing segmentation network's encoders do not directly generate semantic embeddings, which could enable the decoder to reconstruct segmentation masks effectively from these well-defined features. We propose a Supervised Prototypical Contrastive Loss that fuses supervised and prototypical contrastive learning to enhance coronary DSA image segmentation. The supervised contrastive loss enforces semantic embeddings in the encoder, improving feature differentiation. The prototypical contrastive loss allows the model to focus on the foreground class while alleviating the high intra-class variance and class imbalance problems by concentrating only on the hard-to-classify background samples. We implement the proposed SPCL loss within an MSA-UNet3+: a Multi-Scale Attention-Enhanced UNet3+ architecture. The architecture integrates key components: a Multi-Scale Attention Encoder and a Multi-Scale Dilated Bottleneck designed to enhance multi-scale feature extraction and a Contextual Attention Fusion Module built to keep fine-grained details while improving contextual understanding. Experiments on a private coronary DSA dataset show that MSA-UNet3+ outperforms state-of-the-art methods, achieving the highest Dice coefficient and F1-score and significantly reducing ASD and ACD. The developed framework provides clinicians with precise vessel segmentation, enabling accurate identification of coronary stenosis and supporting informed diagnostic and therapeutic decisions. The code will be released at https://github.com/rayanmerghani/MSA-UNet3plus.
3D Universal Lesion Detection and Tagging in CT with Self-Training
Venue: arXiv cs.CV 2025
Year: 2025

Radiologists routinely perform the tedious task of lesion localization, classification, and size measurement in computed tomography (CT) studies. Universal lesion detection and tagging (ULDT) can simultaneously help alleviate the cumbersome nature of lesion measurement and enable tumor burden assessment. Previous ULDT approaches utilize the publicly available DeepLesion dataset, however it does not provide the full volumetric (3D) extent of lesions and also displays a severe class imbalance. In this work, we propose a self-training pipeline to detect 3D lesions and tag them according to the body part they occur in. We used a significantly limited 30\% subset of DeepLesion to train a VFNet model for 2D lesion detection and tagging. Next, the 2D lesion context was expanded into 3D, and the mined 3D lesion proposals were integrated back into the baseline training data in order to retrain the model over multiple rounds. Through the self-training procedure, our VFNet model learned from its own predictions, detected lesions in 3D, and tagged them. Our results indicated that our VFNet model achieved an average sensitivity of 46.9\% at [0.125:8] false positives (FP) with a limited 30\% data subset in comparison to the 46.8\% of an existing approach that used the entire DeepLesion dataset. To our knowledge, we are the first to jointly detect lesions in 3D and tag them according to the body part label.
A moving target in AI-assisted decision-making: Dataset shift, model updating, and the problem of update opacity
Venue: arXiv cs.CY 2025
Year: 2025

Machine learning (ML) systems are vulnerable to performance decline over time due to dataset shift. To address this problem, experts often suggest that ML systems should be regularly updated to ensure ongoing performance stability. Some scholarly literature has begun to address the epistemic and ethical challenges associated with different updating methodologies. Thus far, however, little attention has been paid to the impact of model updating on the ML-assisted decision-making process itself, particularly in the AI ethics and AI epistemology literatures. This article aims to address this gap in the literature. It argues that model updating introduces a new sub-type of opacity into ML-assisted decision-making -- update opacity -- that occurs when users cannot understand how or why an update has changed the reasoning or behaviour of an ML system. This type of opacity presents a variety of distinctive epistemic and safety concerns that available solutions to the black box problem in ML are largely ill-equipped to address. A variety of alternative strategies may be developed or pursued to address the problem of update opacity more directly, including bi-factual explanations, dynamic model reporting, and update compatibility. However, each of these strategies presents its own risks or carries significant limitations. Further research will be needed to address the epistemic and safety concerns associated with model updating and update opacity going forward.
Unleashing the Power of LLMs in Dense Retrieval with Query Likelihood Modeling
Venue: arXiv cs.IR 2025
Year: 2025

Dense retrieval is a crucial task in Information Retrieval (IR), serving as the basis for downstream tasks such as re-ranking and augmenting generation. Recently, large language models (LLMs) have demonstrated impressive semantic understanding capabilities, making them attractive to researchers focusing on dense retrieval. While LLMs, as decoder-style generative models, excel in language generation, they often fall short in modeling global information due to a lack of attention to subsequent tokens. Drawing inspiration from the classical word-based language modeling approach for IR, specifically the query likelihood (QL) model, we aim to leverage the generative strengths of LLMs through QL maximization. Rather than employing QL estimation for document ranking, we propose an auxiliary task of QL maximization to enhance the backbone for subsequent contrastive learning of the retriever. We introduce our model, LLM-QL, which incorporates two key components: Attention Block (AB) and Document Corruption (DC). AB blocks the attention of predictive tokens to the document tokens before the document's ending token, while DC corrupts a document by masking a portion of its tokens during prediction. Evaluations on the in-domain (MS MARCO) and out-of-domain dataset (BEIR) indicate LLM-QL's superiority over other LLM-based retrievers. Furthermore, comprehensive analyses also validate the efficacy of LLM-QL and its components.
A Reality Check of Vision-Language Pre-training in Radiology: Have We Progressed Using Text?
Venue: arXiv cs.CV 2025
Year: 2025

Vision-language pre-training has recently gained popularity as it allows learning rich feature representations using large-scale data sources. This paradigm has quickly made its way into the medical image analysis community. In particular, there is an impressive amount of recent literature developing vision-language models for radiology. However, the available medical datasets with image-text supervision are scarce, and medical concepts are fine-grained, involving expert knowledge that existing vision-language models struggle to encode. In this paper, we propose to take a prudent step back from the literature and revisit supervised, unimodal pre-training, using fine-grained labels instead. We conduct an extensive comparison demonstrating that unimodal pre-training is highly competitive and better suited to integrating heterogeneous data sources. Our results also question the potential of recent vision-language models for open-vocabulary generalization, which have been evaluated using optimistic experimental settings. Finally, we study novel alternatives to better integrate fine-grained labels and noisy text supervision.
AnomalousNet: A Hybrid Approach with Attention U-Nets and Change Point Detection for Accurate Characterization of Anomalous Diffusion in Video Data
Venue: arXiv cs.CV 2025
Year: 2025

Anomalous diffusion occurs in a wide range of systems, including protein transport within cells, animal movement in complex habitats, pollutant dispersion in groundwater, and nanoparticle motion in synthetic materials. Accurately estimating the anomalous diffusion exponent and the diffusion coefficient from the particle trajectories is essential to distinguish between sub-diffusive, super-diffusive, or normal diffusion regimes. These estimates provide a deeper insight into the underlying dynamics of the system, facilitating the identification of particle behaviors and the detection of changes in diffusion states. However, analyzing short and noisy video data, which often yield incomplete and heterogeneous trajectories, poses a significant challenge for traditional statistical approaches. We introduce a data-driven method that integrates particle tracking, an attention U-Net architecture, and a change-point detection algorithm to address these issues. This approach not only infers the anomalous diffusion parameters with high accuracy but also identifies temporal transitions between different states, even in the presence of noise and limited temporal resolution. Our methodology demonstrated strong performance in the 2nd Anomalous Diffusion (AnDi) Challenge benchmark within the top submissions for video tasks.
The challenge of uncertainty quantification of large language models in medicine
Venue: arXiv cs.AI 2025
Year: 2025

This study investigates uncertainty quantification in large language models (LLMs) for medical applications, emphasizing both technical innovations and philosophical implications. As LLMs become integral to clinical decision-making, accurately communicating uncertainty is crucial for ensuring reliable, safe, and ethical AI-assisted healthcare. Our research frames uncertainty not as a barrier but as an essential part of knowledge that invites a dynamic and reflective approach to AI design. By integrating advanced probabilistic methods such as Bayesian inference, deep ensembles, and Monte Carlo dropout with linguistic analysis that computes predictive and semantic entropy, we propose a comprehensive framework that manages both epistemic and aleatoric uncertainties. The framework incorporates surrogate modeling to address limitations of proprietary APIs, multi-source data integration for better context, and dynamic calibration via continual and meta-learning. Explainability is embedded through uncertainty maps and confidence metrics to support user trust and clinical interpretability. Our approach supports transparent and ethical decision-making aligned with Responsible and Reflective AI principles. Philosophically, we advocate accepting controlled ambiguity instead of striving for absolute predictability, recognizing the inherent provisionality of medical knowledge.
Truthful or Fabricated? Using Causal Attribution to Mitigate Reward Hacking in Explanations
Venue: arXiv cs.CL 2025
Year: 2025

Chain-of-thought explanations are widely used to inspect the decision process of large language models (LLMs) and to evaluate the trustworthiness of model outputs, making them important for effective collaboration between LLMs and humans. We demonstrate that preference optimization - a key step in the alignment phase - can inadvertently reduce the faithfulness of these explanations. This occurs because the reward model (RM), which guides alignment, is tasked with optimizing both the expected quality of the response and the appropriateness of the explanations (e.g., minimizing bias or adhering to safety standards), creating potential conflicts. The RM lacks a mechanism to assess the consistency between the model's internal decision process and the generated explanation. Consequently, the LLM may engage in "reward hacking" by producing a final response that scores highly while giving an explanation tailored to maximize reward rather than accurately reflecting its reasoning. To address this issue, we propose enriching the RM's input with a causal attribution of the prediction, allowing the RM to detect discrepancies between the generated self-explanation and the model's decision process. In controlled settings, we show that this approach reduces the tendency of the LLM to generate misleading explanations.
Document clustering with evolved multiword search queries
Venue: arXiv cs.IR 2025
Year: 2025

Text clustering holds significant value across various domains due to its ability to identify patterns and group related information. Current approaches which rely heavily on a computed similarity measure between documents are often limited in accuracy and interpretability. We present a novel approach to the problem based on a set of evolved search queries. Clusters are formed as the set of documents matched by a single search query in the set of queries. The queries are optimized to maximize the number of documents returned and to minimize the overlap between clusters (documents returned by more than one query). Where queries contain more than one word they are interpreted disjunctively. We have found it useful to assign one word to be the root and constrain the query construction such that the set of documents returned by any additional query words intersect with the set returned by the root word. Not all documents in a collection are returned by any of the search queries in a set, so once the search query evolution is completed a second stage is performed whereby a KNN algorithm is applied to assign all unassigned documents to their nearest cluster. We describe the method and present results using 8 text datasets comparing effectiveness with well-known existing algorithms. We note that as well as achieving the highest accuracy on these datasets the search query format provides the qualitative benefits of being interpretable and modifiable whilst providing a causal explanation of cluster construction.
Multi-Perspective Attention Mechanism for Bias-Aware Sequential Recommendation
Venue: arXiv cs.IR 2025
Year: 2025

In the era of advancing information technology, recommender systems have emerged as crucial tools for dealing with information overload. However, traditional recommender systems still have limitations in capturing the dynamic evolution of user behavior. To better understand and predict user behavior, especially taking into account the complexity of temporal evolution, sequential recommender systems have gradually become the focus of research. Currently, many sequential recommendation algorithms ignore the amplification effects of prevalent biases, which leads to recommendation results being susceptible to the Matthew Effect. Additionally, it will impose limitations on the recommender system's ability to deeply perceive and capture the dynamic shifts in user preferences, thereby diminishing the extent of its recommendation reach. To address this issue effectively, we propose a recommendation system based on sequential information and attention mechanism called Multi-Perspective Attention Bias Sequential Recommendation (MABSRec). Firstly, we reconstruct user sequences into three short types and utilize graph neural networks for item weighting. Subsequently, an adaptive multi-bias perspective attention module is proposed to enhance the accuracy of recommendations. Experimental results show that the MABSRec model exhibits significant advantages in all evaluation metrics, demonstrating its excellent performance in the sequence recommendation task.
Hybrid Retrieval for Hallucination Mitigation in Large Language Models: A Comparative Analysis
Venue: arXiv cs.IR 2025
Year: 2025

Large Language Models (LLMs) excel in language comprehension and generation but are prone to hallucinations, producing factually incorrect or unsupported outputs. Retrieval Augmented Generation (RAG) systems address this issue by grounding LLM responses with external knowledge. This study evaluates the relationship between retriever effectiveness and hallucination reduction in LLMs using three retrieval approaches: sparse retrieval based on BM25 keyword search, dense retrieval using semantic search with Sentence Transformers, and a proposed hybrid retrieval module. The hybrid module incorporates query expansion and combines the results of sparse and dense retrievers through a dynamically weighted Reciprocal Rank Fusion score. Using the HaluBench dataset, a benchmark for hallucinations in question answering tasks, we assess retrieval performance with metrics such as mean average precision and normalised discounted cumulative gain, focusing on the relevance of the top three retrieved documents. Results show that the hybrid retriever achieves better relevance scores, outperforming both sparse and dense retrievers. Further evaluation of LLM-generated answers against ground truth using metrics such as accuracy, hallucination rate, and rejection rate reveals that the hybrid retriever achieves the highest accuracy on fails, the lowest hallucination rate, and the lowest rejection rate. These findings highlight the hybrid retriever's ability to enhance retrieval relevance, reduce hallucination rates, and improve LLM reliability, emphasising the importance of advanced retrieval techniques in mitigating hallucinations and improving response accuracy.
Watts-Per-Intelligence: Part I (Energy Efficiency)
Venue: arXiv cs.IT 2025
Year: 2025

We present a mathematical framework for quantifying energy efficiency in intelligent systems by linking energy consumption to information-processing capacity. We introduce a watts-per-intelligence metric that integrates algorithmic thermodynamic principles of Landauer with computational models of machine intelligence. By formalising the irreversible energy costs of computation, we derive rigorous lower bounds on energy usage of algorithmic intelligent systems and their adaptability. We introduce theorems that constrain the trade offs between intelligence output and energy expenditure. Our results contribute to design principles for energy-efficient intelligent systems.
Of All StrIPEs: Investigating Structure-informed Positional Encoding for Efficient Music Generation
Venue: arXiv cs.SD 2025
Year: 2025

While music remains a challenging domain for generative models like Transformers, a two-pronged approach has recently proved successful: inserting musically-relevant structural information into the positional encoding (PE) module and using kernel approximation techniques based on Random Fourier Features (RFF) to lower the computational cost from quadratic to linear. Yet, it is not clear how such RFF-based efficient PEs compare with those based on rotation matrices, such as Rotary Positional Encoding (RoPE). In this paper, we present a unified framework based on kernel methods to analyze both families of efficient PEs. We use this framework to develop a novel PE method called RoPEPool, capable of extracting causal relationships from temporal sequences. Using RFF-based PEs and rotation-based PEs, we demonstrate how seemingly disparate PEs can be jointly studied by considering the content-context interactions they induce. For empirical validation, we use a symbolic music generation task, namely, melody harmonization. We show that RoPEPool, combined with highly-informative structural priors, outperforms all methods.