OpenRaiser/Intern-Atlas huggingface dataset:
Using fractal dimension to predict the risk of intra cranial aneurysm rupture with machine learning
Venue: arXiv cs.LG 2024
Year: 2024

Intracranial aneurysms (IAs) that rupture result in significant morbidity and mortality. While traditional risk models such as the PHASES score are useful in clinical decision making, machine learning (ML) models offer the potential to provide more accuracy. In this study, we compared the performance of four different machine learning algorithms Random Forest (RF), XGBoost (XGB), Support Vector Machine (SVM), and Multi Layer Perceptron (MLP) on clinical and radiographic features to predict rupture status of intracranial aneurysms. Among the models, RF achieved the highest accuracy (85%) with balanced precision and recall, while MLP had the lowest overall performance (accuracy of 63%). Fractal dimension ranked as the most important feature for model performance across all models.
Modeling Turbulence in the Atmospheric Boundary Layer with Spectral Element and Finite Volume Methods
Venue: arXiv cs.CE 2024
Year: 2024

We present large-eddy-simulation (LES) modeling approaches for the simulation of atmospheric boundary layer turbulence that are of direct relevance to wind energy production. In this paper, we study a GABLS benchmark problem using high-order spectral element code Nek5000/RS and a block-structured second-order finite-volume code AMR-Wind which are supported under the DOE's Exascale Computing Project (ECP) Center for Efficient Exascale Discretizations (CEED) and ExaWind projects, respectively, targeting application simulations on various acceleration-device based exascale computing platforms. As for Nek5000/RS we demonstrate our newly developed subgrid-scale (SGS) models based on mean-field eddy viscosity (MFEV), high-pass filter (HPF), and Smagorinsky (SMG) with traction boundary conditions. For the traction boundary conditions, a novel analytical approach is presented that solves for the surface friction velocity and surface kinematic temperature flux. For AMR-Wind, standard SMG is used and discussed in detail the traction boundary conditions for convergence. We provide low-order statistics, convergence and turbulent structure analysis. Verification and convergence studies were performed for both codes at various resolutions and it was found that Nek5000/RS demonstrate convergence with resolution for all ABL bulk parameters, including boundary layer and low level jet (LLJ) height. Extensive comparisons are presented with simulation data from the literature.
Constraining Gaussian Process Implicit Surfaces for Robot Manipulation via Dataset Refinement
Venue: arXiv cs.RO 2024
Year: 2024

Model-based control faces fundamental challenges in partially-observable environments due to unmodeled obstacles. We propose an online learning and optimization method to identify and avoid unobserved obstacles online. Our method, Constraint Obeying Gaussian Implicit Surfaces (COGIS), infers contact data using a combination of visual input and state tracking, informed by predictions from a nominal dynamics model. We then fit a Gaussian process implicit surface (GPIS) to these data and refine the dataset through a novel method of enforcing constraints on the estimated surface. This allows us to design a Model Predictive Control (MPC) method that leverages the obstacle estimate to complete multiple manipulation tasks. By modeling the environment instead of attempting to directly adapt the dynamics, our method succeeds at both low-dimensional peg-in-hole tasks and high-dimensional deformable object manipulation tasks. Our method succeeds in 10/10 trials vs 1/10 for a baseline on a real-world cable manipulation task under partial observability of the environment.
GaNDLF-Synth: A Framework to Democratize Generative AI for (Bio)Medical Imaging
Venue: arXiv cs.LG 2024
Year: 2024

Generative Artificial Intelligence (GenAI) is a field of AI that creates new data samples from existing ones. It utilizing deep learning to overcome the scarcity and regulatory constraints of healthcare data by generating new data points that integrate seamlessly with original datasets. This paper explores the background and motivation for GenAI, and introduces the Generally Nuanced Deep Learning Framework for Synthesis (GaNDLF-Synth) to address a significant gap in the literature and move towards democratizing the implementation and assessment of image synthesis tasks in healthcare. GaNDLF-Synth describes a unified abstraction for various synthesis algorithms, including autoencoders, generative adversarial networks, and diffusion models. Leveraging the GANDLF-core framework, it supports diverse data modalities and distributed computing, ensuring scalability and reproducibility through extensive unit testing. The aim of GaNDLF-Synth is to lower the entry barrier for GenAI, and make it more accessible and extensible by the wider scientific community.
Evaluating the performance of state-of-the-art esg domain-specific pre-trained large language models in text classification against existing models and traditional machine learning techniques
Venue: arXiv cs.CL 2024
Year: 2024

This research investigates the classification of Environmental, Social, and Governance (ESG) information within textual disclosures. The aim is to develop and evaluate binary classification models capable of accurately identifying and categorizing E, S and G-related content respectively. The motivation for this research stems from the growing importance of ESG considerations in investment decisions and corporate accountability. Accurate and efficient classification of ESG information is crucial for stakeholders to understand the impact of companies on sustainability and to make informed decisions. The research uses a quantitative approach involving data collection, data preprocessing, and the development of ESG-focused Large Language Models (LLMs) and traditional machine learning (Support Vector Machines, XGBoost) classifiers. Performance evaluation guides iterative refinement until satisfactory metrics are achieved. The research compares traditional machine learning techniques (Support Vector Machines, XGBoost), state-of-the-art language model (FinBERT-ESG) and fine-tuned LLMs like Llama 2, by employing standard Natural Language Processing performance metrics such as accuracy, precision, recall, F1-score. A novel fine-tuning method, Qlora, is applied to LLMs, resulting in significant performance improvements across all ESG domains. The research also develops domain-specific fine-tuned models, such as EnvLlama 2-Qlora, SocLlama 2-Qlora, and GovLlama 2-Qlora, which demonstrate impressive results in ESG text classification.
Demonstrating the Continual Learning Capabilities and Practical Application of Discrete-Time Active Inference
Venue: arXiv cs.AI 2024
Year: 2024

Active inference is a mathematical framework for understanding how agents (biological or artificial) interact with their environments, enabling continual adaptation and decision-making. It combines Bayesian inference and free energy minimization to model perception, action, and learning in uncertain and dynamic contexts. Unlike reinforcement learning, active inference integrates exploration and exploitation seamlessly by minimizing expected free energy. In this paper, we present a continual learning framework for agents operating in discrete time environments, using active inference as the foundation. We derive the mathematical formulations of variational and expected free energy and apply them to the design of a self-learning research agent. This agent updates its beliefs and adapts its actions based on new data without manual intervention. Through experiments in changing environments, we demonstrate the agent's ability to relearn and refine its models efficiently, making it suitable for complex domains like finance and healthcare. The paper concludes by discussing how the proposed framework generalizes to other systems, positioning active inference as a flexible approach for adaptive AI.
A Methodology for Explainable Large Language Models with Integrated Gradients and Linguistic Analysis in Text Classification
Venue: arXiv cs.CL 2024
Year: 2024

Neurological disorders that affect speech production, such as Alzheimer's Disease (AD), significantly impact the lives of both patients and caregivers, whether through social, psycho-emotional effects or other aspects not yet fully understood. Recent advancements in Large Language Model (LLM) architectures have developed many tools to identify representative features of neurological disorders through spontaneous speech. However, LLMs typically lack interpretability, meaning they do not provide clear and specific reasons for their decisions. Therefore, there is a need for methods capable of identifying the representative features of neurological disorders in speech and explaining clearly why these features are relevant. This paper presents an explainable LLM method, named SLIME (Statistical and Linguistic Insights for Model Explanation), capable of identifying lexical components representative of AD and indicating which components are most important for the LLM's decision. In developing this method, we used an English-language dataset consisting of transcriptions from the Cookie Theft picture description task. The LLM Bidirectional Encoder Representations from Transformers (BERT) classified the textual descriptions as either AD or control groups. To identify representative lexical features and determine which are most relevant to the model's decision, we used a pipeline involving Integrated Gradients (IG), Linguistic Inquiry and Word Count (LIWC), and statistical analysis. Our method demonstrates that BERT leverages lexical components that reflect a reduction in social references in AD and identifies which further improve the LLM's accuracy. Thus, we provide an explainability tool that enhances confidence in applying LLMs to neurological clinical contexts, particularly in the study of neurodegeneration.
Real-time Diverse Motion In-betweening with Space-time Control
Venue: arXiv cs.GR 2024
Year: 2024

In this work, we present a data-driven framework for generating diverse in-betweening motions for kinematic characters. Our approach injects dynamic conditions and explicit motion controls into the procedure of motion transitions. Notably, this integration enables a finer-grained spatial-temporal control by allowing users to impart additional conditions, such as duration, path, style, etc., into the in-betweening process. We demonstrate that our in-betweening approach can synthesize both locomotion and unstructured motions, enabling rich, versatile, and high-quality animation generation.
Social Conjuring: Multi-User Runtime Collaboration with AI in Building Virtual 3D Worlds
Venue: arXiv cs.HC 2024
Year: 2024

Generative artificial intelligence has shown promise in prompting virtual worlds into existence, yet little attention has been given to understanding how this process unfolds as social interaction. We present Social Conjurer, a framework for AI-augmented dynamic 3D scene co-creation, where multiple users collaboratively build and modify virtual worlds in real-time. Through an expanded set of interactions, including social and tool-based engagements as well as spatial reasoning, our framework facilitates the creation of rich, diverse virtual environments. Findings from a preliminary user study (N=12) provide insight into the user experience of this approach, how social contexts shape the prompting of spatial environments, and perspective on social applications of prompt-based 3D co-creation. In addition to highlighting the potential of AI-supported multi-user world creation and offering new pathways for AI-augmented creative processes in VR, this article presents a set of implications for designing human-centered interfaces that incorporate AI models into 3D content generation.
Bayesian Intention for Enhanced Human Robot Collaboration
Venue: arXiv cs.RO 2024
Year: 2024

Predicting human intent is challenging yet essential to achieving seamless Human-Robot Collaboration (HRC). Many existing approaches fail to fully exploit the inherent relationships between objects, tasks, and the human model. Current methods for predicting human intent, such as Gaussian Mixture Models (GMMs) and Conditional Random Fields (CRFs), often lack interpretability due to their failure to account for causal relationships between variables. To address these challenges, in this paper, we developed a novel Bayesian Intention (BI) framework to predict human intent within a multi-modality information framework in HRC scenarios. This framework captures the complexity of intent prediction by modeling the correlations between human behavior conventions and scene data. Our framework leverages these inferred intent predictions to optimize the robot's response in real-time, enabling smoother and more intuitive collaboration. We demonstrate the effectiveness of our approach through a HRC task involving a UR5 robot, highlighting BI's capability for real-time human intent prediction and collision avoidance using a unique dataset we created. Our evaluations show that the multi-modality BI model predicts human intent within 2.69ms, with a 36% increase in precision, a 60% increase in F1 Score, and an 85% increase in accuracy compared to its best baseline method. The results underscore BI's potential to advance real-time human intent prediction and collision avoidance, making a significant contribution to the field of HRC.
RRT-CBF Based Motion Planning
Venue: arXiv cs.RO 2024
Year: 2024

Control barrier functions (CBF) are widely explored to enforce the safety-critical constraints on nonlinear systems recently. There are many researchers incorporating the control barrier functions into path planning algorithms to find a safe path, but these methods involve huge computational complexity or unidirectional randomness, resulting in arising of run-time. When safety constraints are satisfied, searching efficiency, and searching space are sacrificed. This paper combines the novel motion planning approach using rapid exploring random trees (RRT) algorithm with model predictive control (MPC) to enforce the CBF with dynamically updating constraints to get the safety-critical resolution of trajectory which will enable the robots not to collide with both static and dynamic circle obstacles as well as other moving robots while considering the model uncertainty in process. Besides, this paper first realizes application of CBF-RRT in robot arm model for nonlinear system.
Data Augmentation for 3DMM-based Arousal-Valence Prediction for HRI
Venue: arXiv cs.RO 2024
Year: 2024

Humans use multiple communication channels to interact with each other. For instance, body gestures or facial expressions are commonly used to convey an intent. The use of such non-verbal cues has motivated the development of prediction models. One such approach is predicting arousal and valence (AV) from facial expressions. However, making these models accurate for human-robot interaction (HRI) settings is challenging as it requires handling multiple subjects, challenging conditions, and a wide range of facial expressions. In this paper, we propose a data augmentation (DA) technique to improve the performance of AV predictors using 3D morphable models (3DMM). We then utilize this approach in an HRI setting with a mediator robot and a group of three humans. Our augmentation method creates synthetic sequences for underrepresented values in the AV space of the SEWA dataset, which is the most comprehensive dataset with continuous AV labels. Results show that using our DA method improves the accuracy and robustness of AV prediction in real-time applications. The accuracy of our models on the SEWA dataset is 0.793 for arousal and valence.
Efficient Training of Large Vision Models via Advanced Automated Progressive Learning
Venue: arXiv cs.CV 2024
Year: 2024

The rapid advancements in Large Vision Models (LVMs), such as Vision Transformers (ViTs) and diffusion models, have led to an increasing demand for computational resources, resulting in substantial financial and environmental costs. This growing challenge highlights the necessity of developing efficient training methods for LVMs. Progressive learning, a training strategy in which model capacity gradually increases during training, has shown potential in addressing these challenges. In this paper, we present an advanced automated progressive learning (AutoProg) framework for efficient training of LVMs. We begin by focusing on the pre-training of LVMs, using ViTs as a case study, and propose AutoProg-One, an AutoProg scheme featuring momentum growth (MoGrow) and a one-shot growth schedule search. Beyond pre-training, we extend our approach to tackle transfer learning and fine-tuning of LVMs. We expand the scope of AutoProg to cover a wider range of LVMs, including diffusion models. First, we introduce AutoProg-Zero, by enhancing the AutoProg framework with a novel zero-shot unfreezing schedule search, eliminating the need for one-shot supernet training. Second, we introduce a novel Unique Stage Identifier (SID) scheme to bridge the gap during network growth. These innovations, integrated with the core principles of AutoProg, offer a comprehensive solution for efficient training across various LVM scenarios. Extensive experiments show that AutoProg accelerates ViT pre-training by up to 1.85x on ImageNet and accelerates fine-tuning of diffusion models by up to 2.86x, with comparable or even higher performance. This work provides a robust and scalable approach to efficient training of LVMs, with potential applications in a wide range of vision tasks. Code: https://github.com/changlin31/AutoProg-Zero
Descriptor: Face Detection Dataset for Programmable Threshold-Based Sparse-Vision
Venue: arXiv cs.CV 2024
Year: 2024

Smart focal-plane and in-chip image processing has emerged as a crucial technology for vision-enabled embedded systems with energy efficiency and privacy. However, the lack of special datasets providing examples of the data that these neuromorphic sensors compute to convey visual information has hindered the adoption of these promising technologies. Neuromorphic imager variants, including event-based sensors, produce various representations such as streams of pixel addresses representing time and locations of intensity changes in the focal plane, temporal-difference data, data sifted/thresholded by temporal differences, image data after applying spatial transformations, optical flow data, and/or statistical representations. To address the critical barrier to entry, we provide an annotated, temporal-threshold-based vision dataset specifically designed for face detection tasks derived from the same videos used for Aff-Wild2. By offering multiple threshold levels (e.g., 4, 8, 12, and 16), this dataset allows for comprehensive evaluation and optimization of state-of-the-art neural architectures under varying conditions and settings compared to traditional methods. The accompanying tool flow for generating event data from raw videos further enhances accessibility and usability. We anticipate that this resource will significantly support the development of robust vision systems based on smart sensors that can process based on temporal-difference thresholds, enabling more accurate and efficient object detection and localization and ultimately promoting the broader adoption of low-power, neuromorphic imaging technologies. To support further research, we publicly released the dataset at \url{https://dx.doi.org/10.21227/bw2e-dj78}.
Seamless Augmented Reality Integration in Arthroscopy: A Pipeline for Articular Reconstruction and Guidance
Venue: arXiv cs.CV 2024
Year: 2024

Arthroscopy is a minimally invasive surgical procedure used to diagnose and treat joint problems. The clinical workflow of arthroscopy typically involves inserting an arthroscope into the joint through a small incision, during which surgeons navigate and operate largely by relying on their visual assessment through the arthroscope. However, the arthroscope's restricted field of view and lack of depth perception pose challenges in navigating complex articular structures and achieving surgical precision during procedures. Aiming at enhancing intraoperative awareness, we present a robust pipeline that incorporates simultaneous localization and mapping, depth estimation, and 3D Gaussian splatting to realistically reconstruct intra-articular structures solely based on monocular arthroscope video. Extending 3D reconstruction to Augmented Reality (AR) applications, our solution offers AR assistance for articular notch measurement and annotation anchoring in a human-in-the-loop manner. Compared to traditional Structure-from-Motion and Neural Radiance Field-based methods, our pipeline achieves dense 3D reconstruction and competitive rendering fidelity with explicit 3D representation in 7 minutes on average. When evaluated on four phantom datasets, our method achieves RMSE = 2.21mm reconstruction error, PSNR = 32.86 and SSIM = 0.89 on average. Because our pipeline enables AR reconstruction and guidance directly from monocular arthroscopy without any additional data and/or hardware, our solution may hold the potential for enhancing intraoperative awareness and facilitating surgical precision in arthroscopy. Our AR measurement tool achieves accuracy within 1.59 +/- 1.81mm and the AR annotation tool achieves a mIoU of 0.721.
AlignSum: Data Pyramid Hierarchical Fine-tuning for Aligning with Human Summarization Preference
Venue: arXiv cs.CL 2024
Year: 2024

Text summarization tasks commonly employ Pre-trained Language Models (PLMs) to fit diverse standard datasets. While these PLMs excel in automatic evaluations, they frequently underperform in human evaluations, indicating a deviation between their generated summaries and human summarization preferences. This discrepancy is likely due to the low quality of fine-tuning datasets and the limited availability of high-quality human-annotated data that reflect true human preference. To address this challenge, we introduce a novel human summarization preference alignment framework AlignSum. This framework consists of three parts: Firstly, we construct a Data Pymarid with extractive, abstractive, and human-annotated summary data. Secondly, we conduct the Gaussian Resampling to remove summaries with extreme lengths. Finally, we implement the two-stage hierarchical fine-tuning with Data Pymarid after Gaussian Resampling. We apply AlignSum to PLMs on the human-annotated CNN/DailyMail and BBC XSum datasets. Experiments show that with AlignSum, PLMs like BART-Large surpass 175B GPT-3 in both automatic and human evaluations. This demonstrates that AlignSum significantly enhances the alignment of language models with human summarization preferences.
TPN: Transferable Proto-Learning Network towards Few-shot Document-Level Relation Extraction
Venue: arXiv cs.CL 2024
Year: 2024

Few-shot document-level relation extraction suffers from poor performance due to the challenging cross-domain transferability of NOTA (none-of-the-above) relation representation. In this paper, we introduce a Transferable Proto-Learning Network (TPN) to address the challenging issue. It comprises three core components: Hybrid Encoder hierarchically encodes semantic content of input text combined with attention information to enhance the relation representations. As a plug-and-play module for Out-of-Domain (OOD) Detection, Transferable Proto-Learner computes NOTA prototype through an adaptive learnable block, effectively mitigating NOTA bias across various domains. Dynamic Weighting Calibrator detects relation-specific classification confidence, serving as dynamic weights to calibrate the NOTA-dominant loss function. Finally, to bolster the model's cross-domain performance, we complement it with virtual adversarial training (VAT). We conduct extensive experimental analyses on FREDo and ReFREDo, demonstrating the superiority of TPN. Compared to state-of-the-art methods, our approach achieves competitive performance with approximately half the parameter size. Data and code are available at https://github.com/EchoDreamer/TPN.