OpenRaiser/Intern-Atlas huggingface dataset:
University Rents Enabling Corporate Innovation: Mapping Academic Researcher Coding and Discursive Labour in the R Language Ecosystem
Venue: arXiv cs.SE 2025
Year: 2025

This article explores the role of unrecognised labour in corporate innovation systems via an analysis of researcher coding and discursive contributions to R, one of the largest statistical software ecosystems. Studies of online platforms typically focus on how platform affordances constrain participants' actions, and profit from their labour. We innovate by connecting the labour performed inside digital platforms to the professional employment of participants. Our case study analyses 8,924 R package repositories on GitHub, examining commits and communications. Our quantitative findings show that researchers, alongside non-affiliated contributors, are the most frequent owners of R package repositories and their most active contributors. Researchers are more likely to hold official roles compared to the average, and to engage in collaborative problem-solving and support work during package development. This means there is, underneath the 'recognised' category of star researchers who transition between academia and industry and secure generous funding, an 'unrecognised' category of researchers who not only create and maintain key statistical infrastructure, but also provide support to industry employees, for no remuneration. Our qualitative findings show how this unrecognised labour affects practitioners. Finally, our analysis of the ideology and practice of free, libre and open source software (FLOSS) shows how this ideology and practice legitimate the use of 'university rents' by Big Tech.
OmniMoGen: Unifying Human Motion Generation via Learning from Interleaved Text-Motion Instructions
Venue: arXiv cs.CV 2025
Year: 2025

Large language models (LLMs) have unified diverse linguistic tasks within a single framework, yet such unification remains unexplored in human motion generation. Existing methods are confined to isolated tasks, limiting flexibility for free-form and omni-objective generation. To address this, we propose OmniMoGen, a unified framework that enables versatile motion generation through interleaved text-motion instructions. Built upon a concise RVQ-VAE and transformer architecture, OmniMoGen supports end-to-end instruction-driven motion generation. We construct X2Mo, a large-scale dataset of over 137K interleaved text-motion instructions, and introduce AnyContext, a benchmark for evaluating interleaved motion generation. Experiments show that OmniMoGen achieves state-of-the-art performance on text-to-motion, motion editing, and AnyContext, exhibiting emerging capabilities such as compositional editing, self-reflective generation, and knowledge-informed generation. These results mark a step toward the next intelligent motion generation. Project Page: https://OmniMoGen.github.io/.
CycleChart: A Unified Consistency-Based Learning Framework for Bidirectional Chart Understanding and Generation
Venue: arXiv cs.CL 2025
Year: 2025

Current chart-specific tasks, such as chart question answering, chart parsing, and chart generation, are typically studied in isolation, preventing models from learning the shared semantics that link chart generation and interpretation. We introduce CycleChart, a consistency-based learning framework for bidirectional chart understanding and generation. CycleChart adopts a schema-centric formulation as a common interface across tasks. We construct a consistent multi-task dataset, where each chart sample includes aligned annotations for schema prediction, data parsing, and question answering. To learn cross-directional chart semantics, CycleChart introduces a generate-parse consistency objective: the model generates a chart schema from a table and a textual query, then learns to recover the schema and data from the generated chart, enforcing semantic alignment across directions. CycleChart achieves strong results on chart generation, chart parsing, and chart question answering, demonstrating improved cross-task generalization and marking a step toward more general chart understanding models.
Operator-Based Generalization Bound for Deep Learning: Insights on Multi-Task Learning
Venue: arXiv cs.LG 2025
Year: 2025

This paper presents novel generalization bounds for vector-valued neural networks and deep kernel methods, focusing on multi-task learning through an operator-theoretic framework. Our key development lies in strategically combining a Koopman based approach with existing techniques, achieving tighter generalization guarantees compared to traditional norm-based bounds. To mitigate computational challenges associated with Koopman-based methods, we introduce sketching techniques applicable to vector valued neural networks. These techniques yield excess risk bounds under generic Lipschitz losses, providing performance guarantees for applications including robust and multiple quantile regression. Furthermore, we propose a novel deep learning framework, deep vector-valued reproducing kernel Hilbert spaces (vvRKHS), leveraging Perron Frobenius (PF) operators to enhance deep kernel methods. We derive a new Rademacher generalization bound for this framework, explicitly addressing underfitting and overfitting through kernel refinement strategies. This work offers novel insights into the generalization properties of multitask learning with deep learning architectures, an area that has been relatively unexplored until recent developments.
Causal Heterogeneous Graph Learning Method for Chronic Obstructive Pulmonary Disease Prediction
Venue: arXiv cs.LG 2025
Year: 2025

Due to the insufficient diagnosis and treatment capabilities at the grassroots level, there are still deficiencies in the early identification and early warning of acute exacerbation of Chronic obstructive pulmonary disease (COPD), often resulting in a high prevalence rate and high burden, but the screening rate is relatively low. In order to gradually improve this situation. In this paper, this study develop a Causal Heterogeneous Graph Representation Learning (CHGRL) method for COPD comorbidity risk prediction method that: a) constructing a heterogeneous Our dataset includes the interaction between patients and diseases; b) A cause-aware heterogeneous graph learning architecture has been constructed, combining causal inference mechanisms with heterogeneous graph learning, which can support heterogeneous graph causal learning for different types of relationships; and c) Incorporate the causal loss function in the model design, and add counterfactual reasoning learning loss and causal regularization loss on the basis of the cross-entropy classification loss. We evaluate our method and compare its performance with strong GNN baselines. Following experimental evaluation, the proposed model demonstrates high detection accuracy.
Observer, Not Player: Simulating Theory of Mind in LLMs through Game Observation
Venue: arXiv cs.AI 2025
Year: 2025

We present an interactive framework for evaluating whether large language models (LLMs) exhibit genuine "understanding" in a simple yet strategic environment. As a running example, we focus on Rock-Paper-Scissors (RPS), which, despite its apparent simplicity, requires sequential reasoning, adaptation, and strategy recognition. Our system positions the LLM as an Observer whose task is to identify which strategies are being played and to articulate the reasoning behind this judgment. The purpose is not to test knowledge of Rock-Paper-Scissors itself, but to probe whether the model can exhibit mind-like reasoning about sequential behavior. To support systematic evaluation, we provide a benchmark consisting of both static strategies and lightweight dynamic strategies specified by well-prompted rules. We quantify alignment between the Observer's predictions and the ground-truth distributions induced by actual strategy pairs using three complementary signals: Cross-Entropy, Brier score, and Expected Value (EV) discrepancy. These metrics are further integrated into a unified score, the Union Loss, which balances calibration, sensitivity, and payoff alignment. Together with a Strategy Identification Rate (SIR) metric, our framework captures not only predictive accuracy but also whether the model can stably identify the latent strategies in play. The demo emphasizes interactivity, transparency, and reproducibility. Users can adjust LLM distributions in real time, visualize losses as they evolve, and directly inspect reasoning snippets to identify where and why failures occur. In doing so, our system provides a practical and interpretable proxy for mind-like inference in sequential games, offering insights into both the strengths and limitations of current LLM reasoning.
Towards Minimal Fine-Tuning of VLMs
Venue: arXiv cs.CV 2025
Year: 2025

We introduce Image-LoRA, a lightweight parameter efficient fine-tuning (PEFT) recipe for transformer-based vision-language models (VLMs). Image-LoRA applies low-rank adaptation only to the value path of attention layers within the visual-token span, reducing adapter-only training FLOPs roughly in proportion to the visual-token fraction. We further adapt only a subset of attention heads, selected using head influence scores estimated with a rank-1 Image-LoRA, and stabilize per-layer updates via selection-size normalization. Across screen-centric grounding and referring benchmarks spanning text-heavy to image-heavy regimes, Image-LoRA matches or closely approaches standard LoRA accuracy while using fewer trainable parameters and lower adapter-only training FLOPs. The method also preserves the pure-text reasoning performance of VLMs before and after fine-tuning, as further shown on GSM8K.
From Black-Box Tuning to Guided Optimization via Hyperparameters Interaction Analysis
Venue: arXiv cs.LG 2025
Year: 2025

Hyperparameters tuning is a fundamental, yet computationally expensive, step in optimizing machine learning models. Beyond optimization, understanding the relative importance and interaction of hyperparameters is critical to efficient model development. In this paper, we introduce MetaSHAP, a scalable semi-automated eXplainable AI (XAI) method, that uses meta-learning and Shapley values analysis to provide actionable and dataset-aware tuning insights. MetaSHAP operates over a vast benchmark of over 09 millions evaluated machine learning pipelines, allowing it to produce interpretable importance scores and actionable tuning insights that reveal how much each hyperparameter matters, how it interacts with others and in which value ranges its influence is concentrated. For a given algorithm and dataset, MetaSHAP learns a surrogate performance model from historical configurations, computes hyperparameters interactions using SHAP-based analysis, and derives interpretable tuning ranges from the most influential hyperparameters. This allows practitioners not only to prioritize which hyperparameters to tune, but also to understand their directionality and interactions. We empirically validate MetaSHAP on a diverse benchmark of 164 classification datasets and 14 classifiers, demonstrating that it produces reliable importance rankings and competitive performance when used to guide Bayesian optimization.
Digital Twin-Driven Zero-Shot Fault Diagnosis of Axial Piston Pumps Using Fluid-Borne Noise Signals
Venue: arXiv cs.LG 2025
Year: 2025

Axial piston pumps are crucial components in fluid power systems, where reliable fault diagnosis is essential for ensuring operational safety and efficiency. Traditional data-driven methods require extensive labeled fault data, which is often impractical to obtain, while model-based approaches suffer from parameter uncertainties. This paper proposes a digital twin (DT)-driven zero-shot fault diagnosis framework utilizing fluid-borne noise (FBN) signals. The framework calibrates a high-fidelity DT model using only healthy-state data, generates synthetic fault signals for training deep learning classifiers, and employs a physics-informed neural network (PINN) as a virtual sensor for flow ripple estimation. Gradient-weighted class activation mapping (Grad-CAM) is integrated to visualize the decision-making process of neural networks, revealing that large kernels matching the subsequence length in time-domain inputs and small kernels in time-frequency domain inputs enable higher diagnostic accuracy by focusing on physically meaningful features. Experimental validations demonstrate that training on signals from the calibrated DT model yields diagnostic accuracies exceeding 95\% on real-world benchmarks, while uncalibrated models result in significantly lower performance, highlighting the framework's effectiveness in data-scarce scenarios.
GShield: Mitigating Poisoning Attacks in Federated Learning
Venue: arXiv cs.CR 2025
Year: 2025

Federated Learning (FL) has recently emerged as a revolutionary approach to collaborative training Machine Learning models. In particular, it enables decentralized model training while preserving data privacy, but its distributed nature makes it highly vulnerable to a severe attack known as Data Poisoning. In such scenarios, malicious clients inject manipulated data into the training process, thereby degrading global model performance or causing targeted misclassification. In this paper, we present a novel defense mechanism called GShield, designed to detect and mitigate malicious and low-quality updates, especially under non-independent and identically distributed (non-IID) data scenarios. GShield operates by learning the distribution of benign gradients through clustering and Gaussian modeling during an initial round, enabling it to establish a reliable baseline of trusted client behavior. With this benign profile, GShield selectively aggregates only those updates that align with the expected gradient patterns, effectively isolating adversarial clients and preserving the integrity of the global model. An extensive experimental campaign demonstrates that our proposed defense significantly improves model robustness compared to the state-of-the-art methods while maintaining a high accuracy of performance across both tabular and image datasets. Furthermore, GShield improves the accuracy of the targeted class by 43\% to 65\% after detecting malicious and low-quality clients.
Causal-Guided Detoxify Backdoor Attack of Open-Weight LoRA Models
Venue: arXiv cs.CR 2025
Year: 2025

Low-Rank Adaptation (LoRA) has emerged as an efficient method for fine-tuning large language models (LLMs) and is widely adopted within the open-source community. However, the decentralized dissemination of LoRA adapters through platforms such as Hugging Face introduces novel security vulnerabilities: malicious adapters can be easily distributed and evade conventional oversight mechanisms. Despite these risks, backdoor attacks targeting LoRA-based fine-tuning remain relatively underexplored. Existing backdoor attack strategies are ill-suited to this setting, as they often rely on inaccessible training data, fail to account for the structural properties unique to LoRA, or suffer from high false trigger rates (FTR), thereby compromising their stealth. To address these challenges, we propose Causal-Guided Detoxify Backdoor Attack (CBA), a novel backdoor attack framework specifically designed for open-weight LoRA models. CBA operates without access to original training data and achieves high stealth through two key innovations: (1) a coverage-guided data generation pipeline that synthesizes task-aligned inputs via behavioral exploration, and (2) a causal-guided detoxification strategy that merges poisoned and clean adapters by preserving task-critical neurons. Unlike prior approaches, CBA enables post-training control over attack intensity through causal influence-based weight allocation, eliminating the need for repeated retraining. Evaluated across six LoRA models, CBA achieves high attack success rates while reducing FTR by 50-70\% compared to baseline methods. Furthermore, it demonstrates enhanced resistance to state-of-the-art backdoor defenses, highlighting its stealth and robustness.
Bridging Semantics and Geometry: A Decoupled LVLM-SAM Framework for Reasoning Segmentation in Remote Sensing
Venue: arXiv cs.CV 2025
Year: 2025

Large Vision-Language Models (LVLMs) hold great promise for advancing remote sensing (RS) analysis, yet existing reasoning segmentation frameworks couple linguistic reasoning and pixel prediction through end-to-end supervised fine-tuning, leading to weak geometric grounding and limited generalization across tasks. To address this, we developed Think2Seg-RS, a decoupled framework that trains an LVLM prompter to control a frozen Segment Anything Model (SAM) via structured geometric prompts. Through a mask-only reinforcement learning objective, the LVLM learns to translate abstract semantic reasoning into spatially grounded actions, achieving state-of-the-art performance on the EarthReason dataset. Remarkably, the learned prompting policy generalizes zero-shot to multiple referring segmentation benchmarks, exposing a distinct divide between semantic-level and instance-level grounding. We further found that compact segmenters outperform larger ones under semantic-level supervision, and that negative prompts are ineffective in heterogeneous aerial backgrounds. Together, these findings establish semantic-level reasoning segmentation as a new paradigm for geospatial understanding, opening the way toward unified, interpretable LVLM-driven Earth observation. Our code and model are available at https://github.com/Ricardo-XZ/Think2Seg-RS.
Results on cubic bent and weakly regular bent $p$-ary functions leading to a class of cubic ternary non-weakly regular bent functions
Venue: arXiv cs.DM 2025
Year: 2025

Much work has been devoted to bent functions in odd characteristic, but a gap remains between our knowledge of binary and nonbinary bent functions. In the first part of this paper, we attempt to partially bridge this gap by generalizing to any characteristic important properties known in characteristic 2 concerning the Walsh transform of derivatives of bent functions. Some of these properties generalize to all bent functions, while others appear to apply only to weakly regular bent functions. We deduce a method to obtain a bent function by adding a quadratic function to a weakly regular bent function. We also identify a particular class of bent functions possessing the property that every first-order derivative in a nonzero direction has a derivative (which is then a second-order derivative of the function) equal to a nonzero constant. We show that this property implies bentness and is shared in particular by all cubic bent functions. It generalizes the notion of cubic-like bent function, that was introduced and studied for binary functions by Irene Villa and the first author. In the second part of the paper, we provide (for the first time) a primary construction leading to an infinite class of cubic bent functions that are not weakly regular. We show the bentness of the functions by two approaches: by calculating the Walsh transform directly and by considering the second-order derivatives (and applying the results from the first part of the paper).
Neural Implicit Heart Coordinates: 3D cardiac shape reconstruction from sparse segmentations
Venue: arXiv cs.CV 2025
Year: 2025

Accurate reconstruction of cardiac anatomy from sparse clinical images remains a major challenge in patient-specific modeling. While neural implicit functions have previously been applied to this task, their application to mapping anatomical consistency across subjects has been limited. In this work, we introduce Neural Implicit Heart Coordinates (NIHCs), a standardized implicit coordinate system, based on universal ventricular coordinates, that provides a common anatomical reference frame for the human heart. Our method predicts NIHCs directly from a limited number of 2D segmentations (sparse acquisition) and subsequently decodes them into dense 3D segmentations and high-resolution meshes at arbitrary output resolution. Trained on a large dataset of 5,000 cardiac meshes, the model achieves high reconstruction accuracy on clinical contours, with mean Euclidean surface errors of 2.51$\pm$0.33 mm in a diseased cohort (n=4549) and 2.3$\pm$0.36 mm in a healthy cohort (n=5576). The NIHC representation enables anatomically coherent reconstruction even under severe slice sparsity and segmentation noise, faithfully recovering complex structures such as the valve planes. Compared with traditional pipelines, inference time is reduced from over 60 s to 5-15 s. These results demonstrate that NIHCs constitute a robust and efficient anatomical representation for patient-specific 3D cardiac reconstruction from minimal input data.
SafeMed-R1: Adversarial Reinforcement Learning for Generalizable and Robust Medical Reasoning in Vision-Language Models
Venue: arXiv cs.AI 2025
Year: 2025

Vision--Language Models (VLMs) show significant promise for Medical Visual Question Answering (VQA), yet their deployment in clinical settings is hindered by severe vulnerability to adversarial attacks. Standard adversarial training, while effective for simpler tasks, often degrades both generalization performance and the quality of generated clinical reasoning. We introduce SafeMed-R1, a hybrid defense framework that ensures robust performance while preserving high-quality, interpretable medical reasoning. SafeMed-R1 employs a two-stage approach: at training time, we integrate Adversarial Training with Group Relative Policy Optimization (AT-GRPO) to explicitly robustify the reasoning process against worst-case perturbations; at inference time, we augment the model with Randomized Smoothing to provide certified $L_2$-norm robustness guarantees. We evaluate SafeMed-R1 on the OmniMedVQA benchmark across eight medical imaging modalities comprising over 88,000 samples. Our experiments reveal that standard fine-tuned VLMs, despite achieving 95\% accuracy on clean inputs, collapse to approximately 25\% under PGD attacks. In contrast, SafeMed-R1 maintains 84.45\% accuracy under the same adversarial conditions, representing a 59 percentage point improvement in robustness. Furthermore, we demonstrate that models trained with explicit chain-of-thought reasoning exhibit superior adversarial robustness compared to instruction-only variants, suggesting a synergy between interpretability and security in medical AI systems.
Learning-Assisted Multi-Operator Variable Neighborhood Search for Urban Cable Routing
Venue: arXiv cs.NE 2025
Year: 2025

Urban underground cable construction is essential for enhancing the reliability of city power grids, yet its high construction costs make planning a worthwhile optimization task. In urban environments, road layouts tightly constrain cable routing. This, on the one hand, renders relation-only models (i.e., those without explicit routes) used in prior work overly simplistic, and on the other hand, dramatically enlarges the combinatorial search space, thereby imposing much higher demands on algorithm design. In this study, we formulate urban cable routing as a connectivity-path co-optimization problem and propose a learning-assisted multi-operator variable neighborhood search (L-MVNS) algorithm. The framework first introduces an auxiliary task to generate high-quality feasible initial solutions. A hybrid genetic search (HGS) and A* serve as the connectivity optimizer and the route-planning optimizer, respectively. Building on these, a multi-operator variable neighborhood search (MVNS) iteratively co-optimizes inter-substation connectivity and detailed routes via three complementary destruction operators, a modified A* repair operator, and an adaptive neighborhood-sizing mechanism. A multi-agent deep reinforcement learning module is further embedded to prioritize promising neighborhoods. We also construct a standardized and scalable benchmark suite for evaluation. Across these cases, comprehensive experiments demonstrate effectiveness and stability: relative to representative approaches, MVNS and L-MVNS reduce total construction cost by approximately 30-50%, with L-MVNS delivering additional gains on larger instances and consistently higher stability.