OpenRaiser/Intern-Atlas huggingface dataset:
A Chain of Diagnosis Framework for Accurate and Explainable Radiology Report Generation
Venue: arXiv cs.CV 2025
Year: 2025

Despite the progress of radiology report generation (RRG), existing works face two challenges: 1) The performances in clinical efficacy are unsatisfactory, especially for lesion attributes description; 2) the generated text lacks explainability, making it difficult for radiologists to trust the results. To address the challenges, we focus on a trustworthy RRG model, which not only generates accurate descriptions of abnormalities, but also provides basis of its predictions. To this end, we propose a framework named chain of diagnosis (CoD), which maintains a chain of diagnostic process for clinically accurate and explainable RRG. It first generates question-answer (QA) pairs via diagnostic conversation to extract key findings, then prompts a large language model with QA diagnoses for accurate generation. To enhance explainability, a diagnosis grounding module is designed to match QA diagnoses and generated sentences, where the diagnoses act as a reference. Moreover, a lesion grounding module is designed to locate abnormalities in the image, further improving the working efficiency of radiologists. To facilitate label-efficient training, we propose an omni-supervised learning strategy with clinical consistency to leverage various types of annotations from different datasets. Our efforts lead to 1) an omni-labeled RRG dataset with QA pairs and lesion boxes; 2) a evaluation tool for assessing the accuracy of reports in describing lesion location and severity; 3) extensive experiments to demonstrate the effectiveness of CoD, where it outperforms both specialist and generalist models consistently on two RRG benchmarks and shows promising explainability by accurately grounding generated sentences to QA diagnoses and images.
Offline Auto Labeling: BAAS
Venue: arXiv cs.CV 2025
Year: 2025

This paper introduces BAAS, a new Extended Object Tracking (EOT) and fusion-based label annotation framework for radar detections in autonomous driving. Our framework utilizes Bayesian-based tracking, smoothing and eventually fusion methods to provide veritable and precise object trajectories along with shape estimation to provide annotation labels on the detection level under various supervision levels. Simultaneously, the framework provides evaluation of tracking performance and label annotation. If manually labeled data is available, each processing module can be analyzed independently or combined with other modules to enable closed-loop continuous improvements. The framework performance is evaluated in a challenging urban real-world scenario in terms of tracking performance and the label annotation errors. We demonstrate the functionality of the proposed approach for varying dynamic objects and class types
Hierarchical Brain Structure Modeling for Predicting Genotype of Glioma
Venue: arXiv cs.CV 2025
Year: 2025

Isocitrate DeHydrogenase (IDH) mutation status is a crucial biomarker for glioma prognosis. However, current prediction methods are limited by the low availability and noise of functional MRI. Structural and morphological connectomes offer a non-invasive alternative, yet existing approaches often ignore the brain's hierarchical organisation and multiscale interactions. To address this, we propose Hi-SMGNN, a hierarchical framework that integrates structural and morphological connectomes from regional to modular levels. It features a multimodal interaction module with a Siamese network and cross-modal attention, a multiscale feature fusion mechanism for reducing redundancy, and a personalised modular partitioning strategy to enhance individual specificity and interpretability. Experiments on the UCSF-PDGM dataset demonstrate that Hi-SMGNN outperforms baseline and state-of-the-art models, showing improved robustness and effectiveness in IDH mutation prediction.
OSUM-EChat: Enhancing End-to-End Empathetic Spoken Chatbot via Understanding-Driven Spoken Dialogue
Venue: arXiv cs.SD 2025
Year: 2025

Empathy is crucial in enabling natural interactions within spoken dialogue systems, allowing machines to recognize and respond appropriately to paralinguistic cues such as age, gender, and emotion. Recent advancements in end-to-end speech language models, which unify speech understanding and generation, provide promising solutions. However, several challenges persist, including an over-reliance on large-scale dialogue datasets, insufficient extraction of paralinguistic cues vital for conveying empathy, and the lack of empathy-specific datasets and evaluation frameworks. To address these issues, we introduce OSUM-EChat, an open-source, end-to-end spoken dialogue system designed to enhance empathetic interactions, particularly in resource-limited settings. OSUM-EChat introduces two key innovations: (1) a three-stage understanding-driven spoken dialogue training strategy that extends the capabilities of a large speech understanding model to spoken dialogue tasks, and (2) a linguistic-paralinguistic dual thinking mechanism that integrates paralinguistic understanding through a chain of thought with dialogue generation, enabling the system to produce more empathetic responses. This approach reduces reliance on large-scale dialogue datasets while maintaining high-quality empathetic interactions. Additionally, we introduce the EChat-200K dataset, a rich corpus of empathetic speech-to-speech dialogues, and the EChat-eval benchmark, a comprehensive framework for evaluating the empathetic capabilities of dialogue systems. Experimental results demonstrate that OSUM-EChat outperforms end-to-end spoken dialogue models regarding empathetic responsiveness, validating its effectiveness.
Demystifying the Role of Rule-based Detection in AI Systems for Windows Malware Detection
Venue: arXiv cs.CR 2025
Year: 2025

Malware detection increasingly relies on AI systems that integrate signature-based detection with machine learning. However, these components are typically developed and combined in isolation, missing opportunities to reduce data complexity and strengthen defenses against adversarial EXEmples, carefully crafted programs designed to evade detection. Hence, in this work we investigate the influence that signature-based detection exerts on model training, when they are included inside the training pipeline. Specifically, we compare models trained on a comprehensive dataset with an AI system whose machine learning component is trained solely on samples not already flagged by signatures. Our results demonstrate improved robustness to both adversarial EXEmples and temporal data drift, although this comes at the cost of a fixed lower bound on false positives, driven by suboptimal rule selection. We conclude by discussing these limitations and outlining how future research could extend AI-based malware detection to include dynamic analysis, thereby further enhancing system resilience.
Thermal Tracks: A Gaussian process-based framework for universal melting curve analysis enabling unconstrained hit identification in thermal proteome profiling experiments
Venue: arXiv cs.LG 2025
Year: 2025

Thermal Tracks is a Python-based statistical framework for analyzing protein thermal stability data that overcomes key limitations of existing thermal proteome profiling (TPP) work-flows. Unlike standard approaches that assume sigmoidal melting curves and are constrained by empirical null distributions (limiting significant hits to approximately 5 % of data), Thermal Tracks uses Gaussian Process (GP) models with squared-exponential kernels to flexibly model any melting curve shape while generating unbiased null distributions through kernel priors. This framework is particularly valuable for analyzing proteome-wide perturbations that significantly alter protein thermal stability, such as pathway inhibitions, genetic modifications, or environmental stresses, where conventional TPP methods may miss biologically relevant changes due to their statistical constraints. Furthermore, Thermal Tracks excels at analyzing proteins with un-conventional melting profiles, including phase-separating proteins and membrane proteins, which often exhibit complex, non-sigmoidal thermal stability behaviors. Thermal Tracks is freely available from GitHub and is implemented in Python, providing an accessible and flexible tool for proteome-wide thermal profiling studies.
NegFaceDiff: The Power of Negative Context in Identity-Conditioned Diffusion for Synthetic Face Generation
Venue: arXiv cs.CV 2025
Year: 2025

The use of synthetic data as an alternative to authentic datasets in face recognition (FR) development has gained significant attention, addressing privacy, ethical, and practical concerns associated with collecting and using authentic data. Recent state-of-the-art approaches have proposed identity-conditioned diffusion models to generate identity-consistent face images, facilitating their use in training FR models. However, these methods often lack explicit sampling mechanisms to enforce inter-class separability, leading to identity overlap in the generated data and, consequently, suboptimal FR performance. In this work, we introduce NegFaceDiff, a novel sampling method that incorporates negative conditions into the identity-conditioned diffusion process. NegFaceDiff enhances identity separation by leveraging negative conditions that explicitly guide the model away from unwanted features while preserving intra-class consistency. Extensive experiments demonstrate that NegFaceDiff significantly improves the identity consistency and separability of data generated by identity-conditioned diffusion models. Specifically, identity separability, measured by the Fisher Discriminant Ratio (FDR), increases from 2.427 to 5.687. These improvements are reflected in FR systems trained on the NegFaceDiff dataset, which outperform models trained on data generated without negative conditions across multiple benchmarks.
Succinct Oblivious Tensor Evaluation and Applications: Adaptively-Secure Laconic Function Evaluation and Trapdoor Hashing for All Circuits
Venue: arXiv cs.CR 2025
Year: 2025

We propose the notion of succinct oblivious tensor evaluation (OTE), where two parties compute an additive secret sharing of a tensor product of two vectors $\mathbf{x} \otimes \mathbf{y}$, exchanging two simultaneous messages. Crucially, the size of both messages and of the CRS is independent of the dimension of $\mathbf{x}$. We present a construction of OTE with optimal complexity from the standard learning with errors (LWE) problem. Then we show how this new technical tool enables a host of cryptographic primitives, all with security reducible to LWE, such as: * Adaptively secure laconic function evaluation for depth-$D$ functions $f:\{0, 1\}^m\rightarrow\{0, 1\}^\ell$ with communication $m+\ell+D\cdot \mathrm{poly}(λ)$. * A trapdoor hash function for all functions. * An (optimally) succinct homomorphic secret sharing for all functions. * A rate-$1/2$ laconic oblivious transfer for batch messages, which is best possible. In particular, we obtain the first laconic function evaluation scheme that is adaptively secure from the standard LWE assumption, improving upon Quach, Wee, and Wichs (FOCS 2018). As a key technical ingredient, we introduce a new notion of \emph{adaptive lattice encodings}, which may be of independent interest.
Slot Attention-based Feature Filtering for Few-Shot Learning
Venue: arXiv cs.CV 2025
Year: 2025

Irrelevant features can significantly degrade few-shot learn ing performance. This problem is used to match queries and support images based on meaningful similarities despite the limited data. However, in this process, non-relevant fea tures such as background elements can easily lead to confu sion and misclassification. To address this issue, we pro pose Slot Attention-based Feature Filtering for Few-Shot Learning (SAFF) that leverages slot attention mechanisms to discriminate and filter weak features, thereby improving few-shot classification performance. The key innovation of SAFF lies in its integration of slot attention with patch em beddings, unifying class-aware slots into a single attention mechanism to filter irrelevant features effectively. We intro duce a similarity matrix that computes across support and query images to quantify the relevance of filtered embed dings for classification. Through experiments, we demon strate that Slot Attention performs better than other atten tion mechanisms, capturing discriminative features while reducing irrelevant information. We validate our approach through extensive experiments on few-shot learning bench marks: CIFAR-FS, FC100, miniImageNet and tieredIma geNet, outperforming several state-of-the-art methods.
Evaluating the Role of Large Language Models in Legal Practice in India
Venue: arXiv cs.CL 2025
Year: 2025

The integration of Artificial Intelligence(AI) into the legal profession raises significant questions about the capacity of Large Language Models(LLM) to perform key legal tasks. In this paper, I empirically evaluate how well LLMs, such as GPT, Claude, and Llama, perform key legal tasks in the Indian context, including issue spotting, legal drafting, advice, research, and reasoning. Through a survey experiment, I compare outputs from LLMs with those of a junior lawyer, with advanced law students rating the work on helpfulness, accuracy, and comprehensiveness. LLMs excel in drafting and issue spotting, often matching or surpassing human work. However, they struggle with specialised legal research, frequently generating hallucinations, factually incorrect or fabricated outputs. I conclude that while LLMs can augment certain legal tasks, human expertise remains essential for nuanced reasoning and the precise application of law.
Generative Modeling with Multi-Instance Reward Learning for E-commerce Creative Optimization
Venue: arXiv cs.LG 2025
Year: 2025

In e-commerce advertising, selecting the most compelling combination of creative elements -- such as titles, images, and highlights -- is critical for capturing user attention and driving conversions. However, existing methods often evaluate creative components individually, failing to navigate the exponentially large search space of possible combinations. To address this challenge, we propose a novel framework named GenCO that integrates generative modeling with multi-instance reward learning. Our unified two-stage architecture first employs a generative model to efficiently produce a diverse set of creative combinations. This generative process is optimized with reinforcement learning, enabling the model to effectively explore and refine its selections. Next, to overcome the challenge of sparse user feedback, a multi-instance learning model attributes combination-level rewards, such as clicks, to the individual creative elements. This allows the reward model to provide a more accurate feedback signal, which in turn guides the generative model toward creating more effective combinations. Deployed on a leading e-commerce platform, our approach has significantly increased advertising revenue, demonstrating its practical value. Additionally, we are releasing a large-scale industrial dataset to facilitate further research in this important domain.
Predictive Uncertainty for Runtime Assurance of a Real-Time Computer Vision-Based Landing System
Venue: arXiv cs.CV 2025
Year: 2025

Recent advances in data-driven computer vision have enabled robust autonomous navigation capabilities for civil aviation, including automated landing and runway detection. However, ensuring that these systems meet the robustness and safety requirements for aviation applications remains a major challenge. In this work, we present a practical vision-based pipeline for aircraft pose estimation from runway images that represents a step toward the ability to certify these systems for use in safety-critical aviation applications. Our approach features three key innovations: (i) an efficient, flexible neural architecture based on a spatial Soft Argmax operator for probabilistic keypoint regression, supporting diverse vision backbones with real-time inference; (ii) a principled loss function producing calibrated predictive uncertainties, which are evaluated via sharpness and calibration metrics; and (iii) an adaptation of Residual-based Receiver Autonomous Integrity Monitoring (RAIM), enabling runtime detection and rejection of faulty model outputs. We implement and evaluate our pose estimation pipeline on a dataset of runway images. We show that our model outperforms baseline architectures in terms of accuracy while also producing well-calibrated uncertainty estimates with sub-pixel precision that can be used downstream for fault detection.
Simpler and Faster Contiguous Art Gallery
Venue: arXiv cs.CG 2025
Year: 2025

The contiguous art gallery problem was introduced at SoCG'25 in a merged paper that combined three simultaneous results, each achieving a polynomial-time algorithm for the problem. This problem is a variant of the classical art gallery problem, first introduced by Klee in 1973. In the contiguous art gallery problem, we are given a polygon P and asked to determine the minimum number of guards needed, where each guard is assigned a contiguous portion of the boundary of P that it can see, such that all assigned portions together cover the boundary of P. The classical art gallery problem is NP-hard and ER-complete, and the three independent works investigated whether this variant admits a polynomial-time solution. Each of these works indeed presented such a solution, with the fastest running in O(k n^5 log n) time, where n denotes the number of vertices of P and k is the size of a minimum guard set covering the boundary of P. We present a solution that is both considerably simpler and significantly faster, yielding a concise and almost entirely self-contained O(k n^2 log^2 n)-time algorithm.
A Machine Learning Approach to Predict Biological Age and its Longitudinal Drivers
Venue: arXiv cs.LG 2025
Year: 2025

Predicting an individual's aging trajectory is a central challenge in preventative medicine and bioinformatics. While machine learning models can predict chronological age from biomarkers, they often fail to capture the dynamic, longitudinal nature of the aging process. In this work, we developed and validated a machine learning pipeline to predict age using a longitudinal cohort with data from two distinct time periods (2019-2020 and 2021-2022). We demonstrate that a model using only static, cross-sectional biomarkers has limited predictive power when generalizing to future time points. However, by engineering novel features that explicitly capture the rate of change (slope) of key biomarkers over time, we significantly improved model performance. Our final LightGBM model, trained on the initial wave of data, successfully predicted age in the subsequent wave with high accuracy ($R^2 = 0.515$ for males, $R^2 = 0.498$ for females), significantly outperforming both traditional linear models and other tree-based ensembles. SHAP analysis of our successful model revealed that the engineered slope features were among the most important predictors, highlighting that an individual's health trajectory, not just their static health snapshot, is a key determinant of biological age. Our framework paves the way for clinical tools that dynamically track patient health trajectories, enabling early intervention and personalized prevention strategies for age-related diseases.
Transforming Questions and Documents for Semantically Aligned Retrieval-Augmented Generation
Venue: arXiv cs.CL 2025
Year: 2025

We introduce a novel retrieval-augmented generation (RAG) framework tailored for multihop question answering. First, our system uses large language model (LLM) to decompose complex multihop questions into a sequence of single-hop subquestions that guide document retrieval. This decomposition mitigates the ambiguity inherent in multi-hop queries by clearly targeting distinct knowledge facets. Second, instead of embedding raw or chunked documents directly, we generate answerable questions from each document chunk using Qwen3-8B, embed these generated questions, and retrieve relevant chunks via question-question embedding similarity. During inference, the retrieved chunks are then fed along with the original question into the RAG pipeline. We evaluate on three multihop question datasets (MuSiQue, 2WikiMultiHopQa, HotpotQA) from LongBench. Our method improves RAG performacne compared to baseline systems. Our contributions highlight the benefits of using answerable-question embeddings for RAG, and the effectiveness of LLM-based query decomposition for multihop scenarios.
Perfect message authentication codes are robust to small deviations from uniform key distributions
Venue: arXiv cs.CR 2025
Year: 2025

We investigate the impact of (possible) deviations of the probability distribution of key values from a uniform distribution for the information-theoretic strong, or perfect, message authentication code. We found a simple expression for the decrease in security as a function of the statistical distance between the real key probability distribution and the uniform one. In a sense, a perfect message authentication code is robust to small deviations from a uniform key distribution.
Bayesian autoregression to optimize temporal Matérn kernel Gaussian process hyperparameters
Venue: arXiv cs.LG 2025
Year: 2025

Gaussian processes are important models in the field of probabilistic numerics. We present a procedure for optimizing Matérn kernel temporal Gaussian processes with respect to the kernel covariance function's hyperparameters. It is based on casting the optimization problem as a recursive Bayesian estimation procedure for the parameters of an autoregressive model. We demonstrate that the proposed procedure outperforms maximizing the marginal likelihood as well as Hamiltonian Monte Carlo sampling, both in terms of runtime and ultimate root mean square error in Gaussian process regression.
Explainable Attention-Guided Stacked Graph Neural Networks for Malware Detection
Venue: arXiv cs.CR 2025
Year: 2025

Malware detection in modern computing environments demands models that are not only accurate but also interpretable and robust to evasive techniques. Graph neural networks (GNNs) have shown promise in this domain by modeling rich structural dependencies in graph-based program representations such as control flow graphs (CFGs). However, single-model approaches may suffer from limited generalization and lack interpretability, especially in high-stakes security applications. In this paper, we propose a novel stacking ensemble framework for graph-based malware detection and explanation. Our method dynamically extracts CFGs from portable executable (PE) files and encodes their basic blocks through a two-step embedding strategy. A set of diverse GNN base learners, each with a distinct message-passing mechanism, is used to capture complementary behavioral features. Their prediction outputs are aggregated by a meta-learner implemented as an attention-based multilayer perceptron, which both classifies malware instances and quantifies the contribution of each base model. To enhance explainability, we introduce an ensemble-aware post-hoc explanation technique that leverages edge-level importance scores generated by a GNN explainer and fuses them using the learned attention weights. This produces interpretable, model-agnostic explanations aligned with the final ensemble decision. Experimental results demonstrate that our framework improves classification performance while providing insightful interpretations of malware behavior.