OpenRaiser/Intern-Atlas huggingface dataset:
A Machine Learning Framework for Handling Unreliable Absence Label and Class Imbalance for Marine Stinger Beaching Prediction
Venue: arXiv cs.LG 2025
Year: 2025

Bluebottles (\textit{Physalia} spp.) are marine stingers resembling jellyfish, whose presence on Australian beaches poses a significant public risk due to their venomous nature. Understanding the environmental factors driving bluebottles ashore is crucial for mitigating their impact, and machine learning tools are to date relatively unexplored. We use bluebottle marine stinger presence/absence data from beaches in Eastern Sydney, Australia, and compare machine learning models (Multilayer Perceptron, Random Forest, and XGBoost) to identify factors influencing their presence. We address challenges such as class imbalance, class overlap, and unreliable absence data by employing data augmentation techniques, including the Synthetic Minority Oversampling Technique (SMOTE), Random Undersampling, and Synthetic Negative Approach that excludes the negative class. Our results show that SMOTE failed to resolve class overlap, but the presence-focused approach effectively handled imbalance, class overlap, and ambiguous absence data. The data attributes such as the wind direction, which is a circular variable, emerged as a key factor influencing bluebottle presence, confirming previous inference studies. However, in the absence of population dynamics, biological behaviours, and life cycles, the best predictive model appears to be Random Forests combined with Synthetic Negative Approach. This research contributes to mitigating the risks posed by bluebottles to beachgoers and provides insights into handling class overlap and unreliable negative class in environmental modelling.
Few-shot Policy (de)composition in Conversational Question Answering
Venue: arXiv cs.CL 2025
Year: 2025

The task of policy compliance detection (PCD) is to determine if a scenario is in compliance with respect to a set of written policies. In a conversational setting, the results of PCD can indicate if clarifying questions must be asked to determine compliance status. Existing approaches usually claim to have reasoning capabilities that are latent or require a large amount of annotated data. In this work, we propose logical decomposition for policy compliance (LDPC): a neuro-symbolic framework to detect policy compliance using large language models (LLMs) in a few-shot setting. By selecting only a few exemplars alongside recently developed prompting techniques, we demonstrate that our approach soundly reasons about policy compliance conversations by extracting sub-questions to be answered, assigning truth values from contextual information, and explicitly producing a set of logic statements from the given policies. The formulation of explicit logic graphs can in turn help answer PCDrelated questions with increased transparency and explainability. We apply this approach to the popular PCD and conversational machine reading benchmark, ShARC, and show competitive performance with no task-specific finetuning. We also leverage the inherently interpretable architecture of LDPC to understand where errors occur, revealing ambiguities in the ShARC dataset and highlighting the challenges involved with reasoning for conversational question answering.
Block Flow: Learning Straight Flow on Data Blocks
Venue: arXiv cs.LG 2025
Year: 2025

Flow-matching models provide a powerful framework for various applications, offering efficient sampling and flexible probability path modeling. These models are characterized by flows with low curvature in learned generative trajectories, which results in reduced truncation error at each sampling step. To further reduce curvature, we propose block matching. This novel approach leverages label information to partition the data distribution into blocks and match them with a prior distribution parameterized using the same label information, thereby learning straighter flows. We demonstrate that the variance of the prior distribution can control the curvature upper bound of forward trajectories in flow-matching models. By designing flexible regularization strategies to adjust this variance, we achieve optimal generation performance, effectively balancing the trade-off between maintaining diversity in generated samples and minimizing numerical solver errors. Our results demonstrate competitive performance with models of the same parameter scale.Code is available at \url{https://github.com/wpp13749/block_flow}.
Towards Online Code Specialization of Systems
Venue: arXiv cs.SE 2025
Year: 2025

Specializing low-level systems to specifics of the workload they serve and platform they are running on often significantly improves performance. However, specializing systems is difficult because of three compounding challenges: i) specialization for optimal performance requires in-depth compile-time changes; ii) the right combination of specialization choices for optimal performance is hard to predict a priori; and iii) workloads and platform details often change online. In practice, benefits of specialization are thus not attainable for many low-level systems. To address this, we advocate for a radically different approach for performance-critical low-level systems: designing and implementing systems with and for runtime code specialization. We leverage just-in-time compilation to change systems code based on developer-specified specialization points as the system runs. The JIT runtime automatically tries out specialization choices and measures their impact on system performance, e.g. request latency or throughput, to guide the search. With Iridescent, our early prototype, we demonstrate that online specialization (i) is feasible even for low-level systems code, such as network stacks, (ii) improves system performance without the need for complex cost models, (iii) incurs low developer effort, especially compared to manual exploration. We conclude with future opportunities online system code specialization enables.
UniTrans: A Unified Vertical Federated Knowledge Transfer Framework for Enhancing Cross-Hospital Collaboration
Venue: arXiv cs.LG 2025
Year: 2025

Cross-hospital collaboration has the potential to address disparities in medical resources across different regions. However, strict privacy regulations prohibit the direct sharing of sensitive patient information between hospitals. Vertical federated learning (VFL) offers a novel privacy-preserving machine learning paradigm that maximizes data utility across multiple hospitals. Traditional VFL methods, however, primarily benefit patients with overlapping data, leaving vulnerable non-overlapping patients without guaranteed improvements in medical prediction services. While some knowledge transfer techniques can enhance the prediction performance for non-overlapping patients, they fall short in addressing scenarios where overlapping and non-overlapping patients belong to different domains, resulting in challenges such as feature heterogeneity and label heterogeneity. To address these issues, we propose a novel unified vertical federated knowledge transfer framework (Unitrans). Our framework consists of three key steps. First, we extract the federated representation of overlapping patients by employing an effective vertical federated representation learning method to model multi-party joint features online. Next, each hospital learns a local knowledge transfer module offline, enabling the transfer of knowledge from the federated representation of overlapping patients to the enriched representation of local non-overlapping patients in a domain-adaptive manner. Finally, hospitals utilize these enriched local representations to enhance performance across various downstream medical prediction tasks. Experiments on real-world medical datasets validate the framework's dual effectiveness in both intra-domain and cross-domain knowledge transfer. The code of \method is available at \url{https://github.com/Chung-ju/Unitrans}.
A Truly Sparse and General Implementation of Gradient-Based Synaptic Plasticity
Venue: arXiv cs.NE 2025
Year: 2025

Online synaptic plasticity rules derived from gradient descent achieve high accuracy on a wide range of practical tasks. However, their software implementation often requires tediously hand-derived gradients or using gradient backpropagation which sacrifices the online capability of the rules. In this work, we present a custom automatic differentiation (AD) pipeline for sparse and online implementation of gradient-based synaptic plasticity rules that generalizes to arbitrary neuron models. Our work combines the programming ease of backpropagation-type methods for forward AD while being memory-efficient. To achieve this, we exploit the advantageous compute and memory scaling of online synaptic plasticity by providing an inherently sparse implementation of AD where expensive tensor contractions are replaced with simple element-wise multiplications if the tensors are diagonal. Gradient-based synaptic plasticity rules such as eligibility propagation (e-prop) have exactly this property and thus profit immensely from this feature. We demonstrate the alignment of our gradients with respect to gradient backpropagation on an synthetic task where e-prop gradients are exact, as well as audio speech classification benchmarks. We demonstrate how memory utilization scales with network size without dependence on the sequence length, as expected from forward AD methods.
Generalization and Informativeness of Weighted Conformal Risk Control Under Covariate Shift
Venue: arXiv cs.LG 2025
Year: 2025

Predictive models are often required to produce reliable predictions under statistical conditions that are not matched to the training data. A common type of training-testing mismatch is covariate shift, where the conditional distribution of the target variable given the input features remains fixed, while the marginal distribution of the inputs changes. Weighted conformal risk control (W-CRC) uses data collected during the training phase to convert point predictions into prediction sets with valid risk guarantees at test time despite the presence of a covariate shift. However, while W-CRC provides statistical reliability, its efficiency -- measured by the size of the prediction sets -- can only be assessed at test time. In this work, we relate the generalization properties of the base predictor to the efficiency of W-CRC under covariate shifts. Specifically, we derive a bound on the inefficiency of the W-CRC predictor that depends on algorithmic hyperparameters and task-specific quantities available at training time. This bound offers insights on relationships between the informativeness of the prediction sets, the extent of the covariate shift, and the size of the calibration and training sets. Experiments on fingerprinting-based localization validate the theoretical results.
Algorithm Selection with Probing Trajectories: Benchmarking the Choice of Classifier Model
Venue: arXiv cs.LG 2025
Year: 2025

Recent approaches to training algorithm selectors in the black-box optimisation domain have advocated for the use of training data that is algorithm-centric in order to encapsulate information about how an algorithm performs on an instance, rather than relying on information derived from features of the instance itself. Probing-trajectories that consist of a sequence of objective performance per function evaluation obtained from a short run of an algorithm have recently shown particular promise in training accurate selectors. However, training models on this type of data requires an appropriately chosen classifier given the sequential nature of the data. There are currently no clear guidelines for choosing the most appropriate classifier for algorithm selection using time-series data from the plethora of models available. To address this, we conduct a large benchmark study using 17 different classifiers and three types of trajectory on a classification task using the BBOB benchmark suite using both leave-one-instance out and leave-one-problem out cross-validation. In contrast to previous studies using tabular data, we find that the choice of classifier has a significant impact, showing that feature-based and interval-based models are the best choices.
Enhancing Coronary Artery Calcium Scoring via Multi-Organ Segmentation on Non-Contrast Cardiac Computed Tomography
Venue: arXiv cs.CV 2025
Year: 2025

Despite coronary artery calcium scoring being considered a largely solved problem within the realm of medical artificial intelligence, this paper argues that significant improvements can still be made. By shifting the focus from pathology detection to a deeper understanding of anatomy, the novel algorithm proposed in the paper both achieves high accuracy in coronary artery calcium scoring and offers enhanced interpretability of the results. This approach not only aids in the precise quantification of calcifications in coronary arteries, but also provides valuable insights into the underlying anatomical structures. Through this anatomically-informed methodology, the paper shows how a nuanced understanding of the heart's anatomy can lead to more accurate and interpretable results in the field of cardiovascular health. We demonstrate the superior accuracy of the proposed method by evaluating it on an open-source multi-vendor dataset, where we obtain results at the inter-observer level, surpassing the current state of the art. Finally, the qualitative analyses show the practical value of the algorithm in such tasks as labeling coronary artery calcifications, identifying aortic calcifications, and filtering out false positive detections due to noise.
Sun-Jafar-Type Schemes for Weak Private Information Retrieval
Venue: arXiv cs.IT 2025
Year: 2025

In information-theoretic private information retrieval (PIR), a client wants to retrieve one desired file out of $M$ files, stored across $N$ servers, while keeping the index of the desired file private from each $T$-sized subset of servers. A PIR protocol must ideally maximize the rate, which is the ratio of the file size to the total quantum of the download from the servers, while ensuring such privacy. In Weak-PIR (WPIR), the criterion of perfect information-theoretic privacy is relaxed. This enables higher rates to be achieved, while some information about the desired file index leaks to the servers. This leakage is captured by various known privacy metrics. By leveraging the well-established capacity-achieving schemes of Sun and Jafar under non-colluding ($T=1$) and colluding ($1<T\leq N$) scenarios, we present WPIR protocols for these scenarios. We also present a new WPIR scheme for the MDS scenario, by building upon the scheme by Banawan and Ulukus for this scenario. We present corresponding explicit rate-privacy trade-offs for these setups, under the mutual-information and the maximal leakage privacy metrics. In the collusion-free setup, our presented rate-privacy trade-off under maximal leakage matches that of the previous state of the art. With respect to the MDS scenario under the maximal leakage metric, we compare with the non-explicit trade-off in the literature, and show that our scheme performs better for some numerical examples. For the $T$-collusion setup (under both privacy metrics) and for the MDS setup under the mutual information metric, our rate-privacy trade-offs are the first in the literature, to the best of our knowledge.
An algorithmic Vizing's theorem: toward efficient edge-coloring sampling with an optimal number of colors
Venue: arXiv cs.DS 2025
Year: 2025

The problem of sampling edge-colorings of graphs with maximum degree $Δ$ has received considerable attention and efficient algorithms are available when the number of colors is large enough with respect to $Δ$. Vizing's theorem guarantees the existence of a $(Δ+1)$-edge-coloring, raising the natural question of how to efficiently sample such edge-colorings. In this paper, we take an initial step toward addressing this question. Building on the approach of Dotan, Linial, and Peled, we analyze a randomized algorithm for generating random proper $(Δ+1)$-edge-colorings, which in particular provides an algorithmic interpretation of Vizing's theorem. The idea is to start from an arbitrary non-proper edge-coloring with the desired number of colors and at each step, recolor one edge uniformly at random provided it does not increase the number of conflicting edges (a potential function will count the number of pairs of adjacent edges of the same color). We show that the algorithm almost surely produces a proper $(Δ+1)$-edge-coloring and propose several conjectures regarding its efficiency and the uniformity of the sampled colorings.
A quantitative framework for evaluating architectural patterns in ML systems
Venue: arXiv cs.SE 2025
Year: 2025

Contemporary intelligent systems incorporate software components, including machine learning components. As they grow in complexity and data volume such machine learning systems face unique quality challenges like scalability and performance. To overcome them, engineers may often use specific architectural patterns, however their impact on ML systems is difficult to quantify. The effect of software architecture on traditional systems is well studied, however more work is needed in the area of machine learning systems. This study proposes a framework for quantitative assessment of architectural patterns in ML systems, focusing on scalability and performance metrics for cost-effective CPU-based inference. We integrate these metrics into a systematic evaluation process for selection of architectural patterns and demonstrate its application through a case study. The approach shown in the paper should enable software architects to objectively analyze and select optimal patterns, addressing key challenges in ML system design.
A Deep Reinforcement Learning based Scheduler for IoT Devices in Co-existence with 5G-NR
Venue: arXiv cs.NI 2025
Year: 2025

Co-existence of 5G New Radio (5G-NR) with IoT devices is considered as a promising technique to enhance the spectral usage and efficiency of future cellular networks. In this paper, a unified framework has been proposed for allocating in-band resource blocks (RBs), i.e., within a multi-cell network, to 5G-NR users in co-existence with NB-IoT and LTE-M devices. First, a benchmark (upper-bound) scheduler has been designed for joint sub-carrier (SC) and modulation and coding scheme (MCS) allocation that maximizes instantaneous throughput and fairness among users/devices, while considering synchronous RB allocation in the neighboring cells. A series of numerical simulations with realistic ICI in an urban scenario have been used to compute benchmark upper-bound solutions for characterizing performance in terms of throughput, fairness, and delay. Next, an edge learning based multi-agent deep reinforcement learning (DRL) framework has been developed for different DRL algorithms, specifically, a policy-based gradient network (PGN), a deep Q-learning based network (DQN), and an actor-critic based deep deterministic policy gradient network (DDPGN). The proposed DRL framework depends on interference allocation, where the actions are based on inter-cell-interference (ICI) instead of power, which can bypass the need for raw data sharing and/or inter-agent communication. The numerical results reveal that the interference allocation based DRL schedulers can significantly outperform their counterparts, where the actions are based on power allocation. Further, the performance of the proposed policy-based edge learning algorithms is close to the centralized ones.
Enhancing IoT Network Security through Adaptive Curriculum Learning and XAI
Venue: arXiv cs.CR 2025
Year: 2025

To address the critical need for secure IoT networks, this study presents a scalable and lightweight curriculum learning framework enhanced with Explainable AI (XAI) techniques, including LIME, to ensure transparency and adaptability. The proposed model employs novel neural network architecture utilized at every stage of Curriculum Learning to efficiently capture and focus on both short- and long-term temporal dependencies, improve learning stability, and enhance accuracy while remaining lightweight and robust against noise in sequential IoT data. Robustness is achieved through staged learning, where the model iteratively refines itself by removing low-relevance features and optimizing performance. The workflow includes edge-optimized quantization and pruning to ensure portability that could easily be deployed in the edge-IoT devices. An ensemble model incorporating Random Forest, XGBoost, and the staged learning base further enhances generalization. Experimental results demonstrate 98% accuracy on CIC-IoV-2024 and CIC-APT-IIoT-2024 datasets and 97% on EDGE-IIoT, establishing this framework as a robust, transparent, and high-performance solution for IoT network security.
Biomedical Knowledge Graph: A Survey of Domains, Tasks, and Real-World Applications
Venue: arXiv cs.CL 2025
Year: 2025

Biomedical knowledge graphs (BKGs) have emerged as powerful tools for organizing and leveraging the vast and complex data found across the biomedical field. Yet, current reviews of BKGs often limit their scope to specific domains or methods, overlooking the broader landscape and the rapid technological progress reshaping it. In this survey, we address this gap by offering a systematic review of BKGs from three core perspectives: domains, tasks, and applications. We begin by examining how BKGs are constructed from diverse data sources, including molecular interactions, pharmacological datasets, and clinical records. Next, we discuss the essential tasks enabled by BKGs, focusing on knowledge management, retrieval, reasoning, and interpretation. Finally, we highlight real-world applications in precision medicine, drug discovery, and scientific research, illustrating the translational impact of BKGs across multiple sectors. By synthesizing these perspectives into a unified framework, this survey not only clarifies the current state of BKG research but also establishes a foundation for future exploration, enabling both innovative methodological advances and practical implementations.
Optimizing for aggressive-style strategies in Flesh and Blood is NP-hard
Venue: arXiv cs.CC 2025
Year: 2025

Flesh and Blood (FAB) is a trading card game that two players need to make a strategy to reduce the life points of their opponent to zero. The mechanics of the game present complex decision-making scenarios of resource management. Due the similarity of other card games, the strategy of the game have scenarios that can turn an NP-problem. This paper presents a model of an aggressive, single-turn strategy as a combinatorial optimization problem, termed the FAB problem. Using mathematical modeling, we demonstrate its equivalence to a 0-1 Knapsack problem, establishing the FAB problem as NP-hard. Additionally, an Integer Linear Programming (ILP) formulation is proposed to tackle real-world instances of the problem. By establishing the computational hardness of optimizing even relatively simple strategies, our work highlights the combinatorial complexity of the game.