OpenRaiser/Intern-Atlas huggingface dataset:
Fundus to Fluorescein Angiography Video Generation as a Retinal Generative Foundation Model
Venue: arXiv cs.CV 2024
Year: 2024

Fundus fluorescein angiography (FFA) is crucial for diagnosing and monitoring retinal vascular issues but is limited by its invasive nature and restricted accessibility compared to color fundus (CF) imaging. Existing methods that convert CF images to FFA are confined to static image generation, missing the dynamic lesional changes. We introduce Fundus2Video, an autoregressive generative adversarial network (GAN) model that generates dynamic FFA videos from single CF images. Fundus2Video excels in video generation, achieving an FVD of 1497.12 and a PSNR of 11.77. Clinical experts have validated the fidelity of the generated videos. Additionally, the model's generator demonstrates remarkable downstream transferability across ten external public datasets, including blood vessel segmentation, retinal disease diagnosis, systemic disease prediction, and multimodal retrieval, showcasing impressive zero-shot and few-shot capabilities. These findings position Fundus2Video as a powerful, non-invasive alternative to FFA exams and a versatile retinal generative foundation model that captures both static and temporal retinal features, enabling the representation of complex inter-modality relationships.
From Babbling to Fluency: Evaluating the Evolution of Language Models in Terms of Human Language Acquisition
Venue: arXiv cs.CL 2024
Year: 2024

We examine the language capabilities of language models (LMs) from the critical perspective of human language acquisition. Building on classical language development theories, we propose a three-stage framework to assess the abilities of LMs, ranging from preliminary word understanding to complex grammar and complex logical reasoning. Using this framework, we evaluate the generative capacities of LMs using methods from linguistic research. Results indicate that although recent LMs outperform earlier models in overall performance, their developmental trajectory does not strictly follow the path of human language acquisition. Notably, in generation tasks, LMs are more similar to human performance in areas where information is easier to extract from the corpus, such as average word length, clauses, and auxiliary verbs. Newer LMs did not exhibit significant progress in terms of specific dimensions, such as clauses and auxiliary verbs, where the variation across corpora is relatively limited. Register theory offers a plausible explanation for these observations, suggesting that the linguistic features of the training data have a substantial impact on the models' abilities.
LLM-Rank: A Graph Theoretical Approach to Pruning Large Language Models
Venue: arXiv cs.LG 2024
Year: 2024

The evolving capabilities of large language models are accompanied by growing sizes and deployment costs, necessitating effective inference optimisation techniques. We propose a novel pruning method utilising centrality measures from graph theory, reducing both the computational requirements and the memory footprint of these models. Specifically, we devise a method for creating a weighted directed acyclical graph representation of multilayer perceptrons to which we apply a modified version of the weighted PageRank centrality measure to compute node importance scores. In combination with uniform pruning this leads to structured sparsity. We call this pruning method MLPRank. Furthermore we introduce an extension to decoder-only transformer models and call it LLMRank. For both variants we demonstrate a strong performance. With MLPRank on average leading to 6.09 % higher accuracy retention than three popular baselines and 13.42 % with LLMRank compared to two popular baselines. Code is available at https://github.com/amazon-science/llm-rank-pruning.
Automating IETF Insights generation with AI
Venue: arXiv cs.NI 2024
Year: 2024

This paper presents the IETF Insights project, an automated system that streamlines the generation of comprehensive reports on the activities of the Internet Engineering Task Force (IETF) Working Groups. The system collects, consolidates, and analyzes data from various IETF sources, including meeting minutes, participant lists, drafts and agendas. The core components of the system include data preprocessing code and a report generation module that produces high-quality documents in LaTeX or Markdown. By integrating large Language Models (LLMs) for summaries based on the data as ground truth, the IETF Insights project enhances the accessibility and utility of IETF records, providing a valuable overview of the IETF's activities and contributions to the community.
Mitigating Biases to Embrace Diversity: A Comprehensive Annotation Benchmark for Toxic Language
Venue: arXiv cs.CL 2024
Year: 2024

This study introduces a prescriptive annotation benchmark grounded in humanities research to ensure consistent, unbiased labeling of offensive language, particularly for casual and non-mainstream language uses. We contribute two newly annotated datasets that achieve higher inter-annotator agreement between human and language model (LLM) annotations compared to original datasets based on descriptive instructions. Our experiments show that LLMs can serve as effective alternatives when professional annotators are unavailable. Moreover, smaller models fine-tuned on multi-source LLM-annotated data outperform models trained on larger, single-source human-annotated datasets. These findings highlight the value of structured guidelines in reducing subjective variability, maintaining performance with limited data, and embracing language diversity. Content Warning: This article only analyzes offensive language for academic purposes. Discretion is advised.
Fine-Tuning Language Models on Multiple Datasets for Citation Intention Classification
Venue: arXiv cs.CL 2024
Year: 2024

Citation intention Classification (CIC) tools classify citations by their intention (e.g., background, motivation) and assist readers in evaluating the contribution of scientific literature. Prior research has shown that pretrained language models (PLMs) such as SciBERT can achieve state-of-the-art performance on CIC benchmarks. PLMs are trained via self-supervision tasks on a large corpus of general text and can quickly adapt to CIC tasks via moderate fine-tuning on the corresponding dataset. Despite their advantages, PLMs can easily overfit small datasets during fine-tuning. In this paper, we propose a multi-task learning (MTL) framework that jointly fine-tunes PLMs on a dataset of primary interest together with multiple auxiliary CIC datasets to take advantage of additional supervision signals. We develop a data-driven task relation learning (TRL) method that controls the contribution of auxiliary datasets to avoid negative transfer and expensive hyper-parameter tuning. We conduct experiments on three CIC datasets and show that fine-tuning with additional datasets can improve the PLMs' generalization performance on the primary dataset. PLMs fine-tuned with our proposed framework outperform the current state-of-the-art models by 7% to 11% on small datasets while aligning with the best-performing model on a large dataset.
GlossyGS: Inverse Rendering of Glossy Objects with 3D Gaussian Splatting
Venue: arXiv cs.CV 2024
Year: 2024

Reconstructing objects from posed images is a crucial and complex task in computer graphics and computer vision. While NeRF-based neural reconstruction methods have exhibited impressive reconstruction ability, they tend to be time-comsuming. Recent strategies have adopted 3D Gaussian Splatting (3D-GS) for inverse rendering, which have led to quick and effective outcomes. However, these techniques generally have difficulty in producing believable geometries and materials for glossy objects, a challenge that stems from the inherent ambiguities of inverse rendering. To address this, we introduce GlossyGS, an innovative 3D-GS-based inverse rendering framework that aims to precisely reconstruct the geometry and materials of glossy objects by integrating material priors. The key idea is the use of micro-facet geometry segmentation prior, which helps to reduce the intrinsic ambiguities and improve the decomposition of geometries and materials. Additionally, we introduce a normal map prefiltering strategy to more accurately simulate the normal distribution of reflective surfaces. These strategies are integrated into a hybrid geometry and material representation that employs both explicit and implicit methods to depict glossy objects. We demonstrate through quantitative analysis and qualitative visualization that the proposed method is effective to reconstruct high-fidelity geometries and materials of glossy objects, and performs favorably against state-of-the-arts.
Towards Hybrid Intelligence in Journalism: Findings and Lessons Learnt from a Collaborative Analysis of Greek Political Rhetoric by ChatGPT and Humans
Venue: arXiv cs.CY 2024
Year: 2024

This chapter introduces a research project titled "Analyzing the Political Discourse: A Collaboration Between Humans and Artificial Intelligence", which was initiated in preparation for Greece's 2023 general elections. The project focused on the analysis of political leaders' campaign speeches, employing Artificial Intelligence (AI), in conjunction with an interdisciplinary team comprising journalists, a political scientist, and data scientists. The chapter delves into various aspects of political discourse analysis, including sentiment analysis, polarization, populism, topic detection, and Named Entities Recognition (NER). This experimental study investigates the capabilities of large language model (LLMs), and in particular OpenAI's ChatGPT, for analyzing political speech, evaluates its strengths and weaknesses, and highlights the essential role of human oversight in using AI in journalism projects and potentially other societal sectors. The project stands as an innovative example of human-AI collaboration (known also as "hybrid intelligence") within the realm of digital humanities, offering valuable insights for future initiatives.
Temporal-Enhanced Multimodal Transformer for Referring Multi-Object Tracking and Segmentation
Venue: arXiv cs.CV 2024
Year: 2024

Referring multi-object tracking (RMOT) is an emerging cross-modal task that aims to locate an arbitrary number of target objects and maintain their identities referred by a language expression in a video. This intricate task involves the reasoning of linguistic and visual modalities, along with the temporal association of target objects. However, the seminal work employs only loose feature fusion and overlooks the utilization of long-term information on tracked objects. In this study, we introduce a compact Transformer-based method, termed TenRMOT. We conduct feature fusion at both encoding and decoding stages to fully exploit the advantages of Transformer architecture. Specifically, we incrementally perform cross-modal fusion layer-by-layer during the encoding phase. In the decoding phase, we utilize language-guided queries to probe memory features for accurate prediction of the desired objects. Moreover, we introduce a query update module that explicitly leverages temporal prior information of the tracked objects to enhance the consistency of their trajectories. In addition, we introduce a novel task called Referring Multi-Object Tracking and Segmentation (RMOTS) and construct a new dataset named Ref-KITTI Segmentation. Our dataset consists of 18 videos with 818 expressions, and each expression averages 10.7 masks, which poses a greater challenge compared to the typical single mask in most existing referring video segmentation datasets. TenRMOT demonstrates superior performance on both the referring multi-object tracking and the segmentation tasks.
Parameter-efficient Adaptation of Multilingual Multimodal Models for Low-resource ASR
Venue: arXiv cs.CL 2024
Year: 2024

Automatic speech recognition (ASR) for low-resource languages remains a challenge due to the scarcity of labeled training data. Parameter-efficient fine-tuning and text-only adaptation are two popular methods that have been used to address such low-resource settings. In this work, we investigate how these techniques can be effectively combined using a multilingual multimodal model like SeamlessM4T. Multimodal models are able to leverage unlabeled text via text-only adaptation with further parameter-efficient ASR fine-tuning, thus boosting ASR performance. We also show cross-lingual transfer from a high-resource language, achieving up to a relative 17% WER reduction over a baseline in a zero-shot setting without any labeled speech.
Truncating Trajectories in Monte Carlo Policy Evaluation: an Adaptive Approach
Venue: arXiv cs.LG 2024
Year: 2024

Policy evaluation via Monte Carlo (MC) simulation is at the core of many MC Reinforcement Learning (RL) algorithms (e.g., policy gradient methods). In this context, the designer of the learning system specifies an interaction budget that the agent usually spends by collecting trajectories of fixed length within a simulator. However, is this data collection strategy the best option? To answer this question, in this paper, we propose as a quality index a surrogate of the mean squared error of a return estimator that uses trajectories of different lengths, i.e., \emph{truncated}. Specifically, this surrogate shows the sub-optimality of the fixed-length trajectory schedule. Furthermore, it suggests that adaptive data collection strategies that spend the available budget sequentially can allocate a larger portion of transitions in timesteps in which more accurate sampling is required to reduce the error of the final estimate. Building on these findings, we present an adaptive algorithm called Robust and Iterative Data collection strategy Optimization (RIDO). The main intuition behind RIDO is to split the available interaction budget into mini-batches. At each round, the agent determines the most convenient schedule of trajectories that minimizes an empirical and robust version of the surrogate of the estimator's error. After discussing the theoretical properties of our method, we conclude by assessing its performance across multiple domains. Our results show that RIDO can adapt its trajectory schedule toward timesteps where more sampling is required to increase the quality of the final estimation.
Interpreting Temporal Graph Neural Networks with Koopman Theory
Venue: arXiv cs.LG 2024
Year: 2024

Spatiotemporal graph neural networks (STGNNs) have shown promising results in many domains, from forecasting to epidemiology. However, understanding the dynamics learned by these models and explaining their behaviour is significantly more complex than for models dealing with static data. Inspired by Koopman theory, which allows a simpler description of intricate, nonlinear dynamical systems, we introduce an explainability approach for temporal graphs. We present two methods to interpret the STGNN's decision process and identify the most relevant spatial and temporal patterns in the input for the task at hand. The first relies on dynamic mode decomposition (DMD), a Koopman-inspired dimensionality reduction method. The second relies on sparse identification of nonlinear dynamics (SINDy), a popular method for discovering governing equations, which we use for the first time as a general tool for explainability. We show how our methods can correctly identify interpretable features such as infection times and infected nodes in the context of dissemination processes.
Day-Night Adaptation: An Innovative Source-free Adaptation Framework for Medical Image Segmentation
Venue: arXiv cs.CV 2024
Year: 2024

Distribution shifts widely exist in medical images acquired from different medical centres, hindering the deployment of semantic segmentation models trained on one centre (source domain) to another (target domain). While unsupervised domain adaptation has shown significant promise in mitigating these shifts, it poses privacy risks due to sharing data between centres. To facilitate adaptation while preserving data privacy, source-free domain adaptation (SFDA) and test-time adaptation (TTA) have emerged as effective paradigms, relying solely on target domain data. However, SFDA requires a pre-collected target domain dataset before deployment. TTA insufficiently exploit the potential value of test data, as it processes the test data only once. Considering that most medical centres operate during the day and remain inactive at night in clinical practice, we propose a novel adaptation framework called Day-Night Adaptation (DyNA) with above insights, which performs adaptation through day-night cycles without requiring access to source data. During the day, a low-frequency prompt is trained to adapt the frozen model to each test sample. We construct a memory bank for prompt initialization and develop a warm-up mechanism to enhance prompt training. During the night, we reuse test data collected from the day and introduce a global student model to bridge the knowledge between teacher and student models, facilitating model fine-tuning while ensuring training stability. Extensive experiments demonstrate that our DyNA outperforms existing TTA and SFDA methods on two benchmark medical image segmentation tasks. Code will be available after the paper is published.
SAda-Net: A Self-Supervised Adaptive Stereo Estimation CNN For Remote Sensing Image Data
Venue: arXiv cs.CV 2024
Year: 2024

Stereo estimation has made many advancements in recent years with the introduction of deep-learning. However the traditional supervised approach to deep-learning requires the creation of accurate and plentiful ground-truth data, which is expensive to create and not available in many situations. This is especially true for remote sensing applications, where there is an excess of available data without proper ground truth. To tackle this problem, we propose a self-supervised CNN with self-improving adaptive abilities. In the first iteration, the created disparity map is inaccurate and noisy. Leveraging the left-right consistency check, we get a sparse but more accurate disparity map which is used as an initial pseudo ground-truth. This pseudo ground-truth is then adapted and updated after every epoch in the training step of the network. We use the sum of inconsistent points in order to track the network convergence. The code for our method is publicly available at: https://github.com/thedodo/SAda-Net}{https://github.com/thedodo/SAda-Net
PORTAL: Scalable Tabular Foundation Models via Content-Specific Tokenization
Venue: arXiv cs.LG 2024
Year: 2024

Self-supervised learning on tabular data seeks to apply advances from natural language and image domains to the diverse domain of tables. However, current techniques often struggle with integrating multi-domain data and require data cleaning or specific structural requirements, limiting the scalability of pre-training datasets. We introduce PORTAL (Pretraining One-Row-at-a-Time for All tabLes), a framework that handles various data modalities without the need for cleaning or preprocessing. This simple yet powerful approach can be effectively pre-trained on online-collected datasets and fine-tuned to match state-of-the-art methods on complex classification and regression tasks. This work offers a practical advancement in self-supervised learning for large-scale tabular data.
Connect-while-in-range: modelling the impact of spatial constraints on dynamic communication network structures
Venue: arXiv cs.SI 2024
Year: 2024

Like other social animals and biological systems, human groups constantly exchange information. Network models provide a way of quantifying this process by representing the pathways of information propagation between individuals. Existing approaches to studying these networks largely hypothesize network formation to be a result of cognitive biases and choices about who to connect to. Observational data suggests, however, that physical proximity plays a major role in shaping the formation of communication networks in human groups. Here we report results from a series of agent-based simulations in which agents move around at random in a bounded 2D space and connect while within communication range. Comparing the results to a non-spatial model, we show how including spatial constraints impacts our predictions of network structure: ranged networks are more clustered, with slightly higher degree, higher average shortest path length, a lower number of connected components and a higher small-world index. We find two important drivers of network structure in range-constrained dynamic networks: communication range relative to environment size, and population density. These results show that neglecting spatial constraints in models of network formation makes a difference for predicted network structures. Our simulation model quantifies this part of the process of network formation, realized by simply situating individuals in an environment. The model also provides a tool to include spatial constraints in other models of human communication, as well as dynamic models of network formation more generally.
Enhancing Fact Retrieval in PLMs through Truthfulness
Venue: arXiv cs.CL 2024
Year: 2024

Pre-trained Language Models (PLMs) encode various facts about the world at their pre-training phase as they are trained to predict the next or missing word in a sentence. There has a been an interest in quantifying and improving the amount of facts that can be extracted from PLMs, as they have been envisioned to act as soft knowledge bases, which can be queried in natural language. Different approaches exist to enhance fact retrieval from PLM. Recent work shows that the hidden states of PLMs can be leveraged to determine the truthfulness of the PLMs' inputs. Leveraging this finding to improve factual knowledge retrieval remains unexplored. In this work, we investigate the use of a helper model to improve fact retrieval. The helper model assesses the truthfulness of an input based on the corresponding hidden states representations from the PLMs. We evaluate this approach on several masked PLMs and show that it enhances fact retrieval by up to 33\%. Our findings highlight the potential of hidden states representations from PLMs in improving their factual knowledge retrieval.
Ornstein-Uhlenbeck Adaptation as a Mechanism for Learning in Brains and Machines
Venue: arXiv cs.LG 2024
Year: 2024

Learning is a fundamental property of intelligent systems, observed across biological organisms and engineered systems. While modern intelligent systems typically rely on gradient descent for learning, the need for exact gradients and complex information flow makes its implementation in biological and neuromorphic systems challenging. This has motivated the exploration of alternative learning mechanisms that can operate locally and do not rely on exact gradients. In this work, we introduce a novel approach that leverages noise in the parameters of the system and global reinforcement signals. Using an Ornstein-Uhlenbeck process with adaptive dynamics, our method balances exploration and exploitation during learning, driven by deviations from error predictions, akin to reward prediction error. Operating in continuous time, Orstein-Uhlenbeck adaptation (OUA) is proposed as a general mechanism for learning dynamic, time-evolving environments. We validate our approach across diverse tasks, including supervised learning and reinforcement learning in feedforward and recurrent systems. Additionally, we demonstrate that it can perform meta-learning, adjusting hyper-parameters autonomously. Our results indicate that OUA provides a viable alternative to traditional gradient-based methods, with potential applications in neuromorphic computing. It also hints at a possible mechanism for noise-driven learning in the brain, where stochastic neurotransmitter release may guide synaptic adjustments.