OpenRaiser/Intern-Atlas huggingface dataset:
Generative Artificial Intelligence Extracts Structure-Function Relationships from Plants for New Materials
Venue: arXiv cs.LG 2025
Year: 2025

Large language models (LLMs) have reshaped the research landscape by enabling new approaches to knowledge retrieval and creative ideation. Yet their application in discipline-specific experimental science, particularly in highly multi-disciplinary domains like materials science, remains limited. We present a first-of-its-kind framework that integrates generative AI with literature from hitherto-unconnected fields such as plant science, biomimetics, and materials engineering to extract insights and design experiments for materials. We focus on humidity-responsive systems such as pollen-based materials and Rhapis excelsa (broadleaf lady palm) leaves, which exhibit self-actuation and adaptive performance. Using a suite of AI tools, including a fine-tuned model (BioinspiredLLM), Retrieval-Augmented Generation (RAG), agentic systems, and a Hierarchical Sampling strategy, we extract structure-property relationships and translate them into new classes of bioinspired materials. Structured inference protocols generate and evaluate hundreds of hypotheses from a single query, surfacing novel and experimentally tractable ideas. We validate our approach through real-world implementation: LLM-generated procedures, materials designs, and mechanical predictions were tested in the laboratory, culminating in the fabrication of a novel pollen-based adhesive with tunable morphology and measured shear strength, establishing a foundation for future plant-derived adhesive design. This work demonstrates how AI-assisted ideation can drive real-world materials design and enable effective human-AI collaboration.
Asymmetric Network Games: $α$-Potential Function and Learning
Venue: arXiv cs.GT 2025
Year: 2025

In a network game, players interact over a network and the utility of each player depends on his own action and on an aggregate of his neighbours' actions. Many real world networks of interest are asymmetric and involve a large number of heterogeneous players. This paper analyzes static network games using the framework of $α$-potential games. Under mild assumptions on the action sets (compact intervals) and the utility functions (twice continuously differentiable) of the players, we derive an expression for an inexact potential function of the game, called the $α$-potential function. Using such a function, we show that modified versions of the sequential best-response algorithm and the simultaneous gradient play algorithm achieve convergence of players' actions to a $2α$-Nash equilibrium. For linear-quadratic network games, we show that $α$ depends on the maximum asymmetry in the network and is well-behaved for a wide range of networks of practical interest. Further, we derive bounds on the social welfare of the $α$-Nash equilibrium corresponding to the maximum of the $α$-potential function, under suitable assumptions. We numerically illustrate the convergence of the proposed algorithms and properties of the learned $2α$-Nash equilibria.
Learning to Forget with Information Divergence Reweighted Objectives for Noisy Labels
Venue: arXiv cs.LG 2025
Year: 2025

We introduce ANTIDOTE, a new class of objectives for learning under noisy labels which are defined in terms of a relaxation over an information-divergence neighborhood. Using convex duality, we provide a reformulation as an adversarial training method that has similar computational cost to training with standard cross-entropy loss. We show that our approach adaptively reduces the influence of the samples with noisy labels during learning, exhibiting a behavior that is analogous to forgetting those samples. ANTIDOTE is effective in practical environments where label noise is inherent in the training data or where an adversary can alter the training labels. Extensive empirical evaluations on different levels of symmetric, asymmetric, human annotation, and real-world label noise show that ANTIDOTE outperforms leading comparable losses in the field and enjoys a time complexity that is very close to that of the standard cross entropy loss.
Segmented Confidence Sequences and Multi-Scale Adaptive Confidence Segments for Anomaly Detection in Nonstationary Time Series
Venue: arXiv cs.LG 2025
Year: 2025

As time series data become increasingly prevalent in domains such as manufacturing, IT, and infrastructure monitoring, anomaly detection must adapt to nonstationary environments where statistical properties shift over time. Traditional static thresholds are easily rendered obsolete by regime shifts, concept drift, or multi-scale changes. To address these challenges, we introduce and empirically evaluate two novel adaptive thresholding frameworks: Segmented Confidence Sequences (SCS) and Multi-Scale Adaptive Confidence Segments (MACS). Both leverage statistical online learning and segmentation principles for local, contextually sensitive adaptation, maintaining guarantees on false alarm rates even under evolving distributions. Our experiments across Wafer Manufacturing benchmark datasets show significant F1-score improvement compared to traditional percentile and rolling quantile approaches. This work demonstrates that robust, statistically principled adaptive thresholds enable reliable, interpretable, and timely detection of diverse real-world anomalies.
Fractal Language Modelling by Universal Sequence Maps (USM)
Venue: arXiv cs.LG 2025
Year: 2025

Motivation: With the advent of Language Models using Transformers, popularized by ChatGPT, there is a renewed interest in exploring encoding procedures that numerically represent symbolic sequences at multiple scales and embedding dimensions. The challenge that encoding addresses is the need for mechanisms that uniquely retain contextual information about the succession of individual symbols, which can then be modeled by nonlinear formulations such as neural networks. Context: Universal Sequence Maps(USM) are iterated functions that bijectively encode symbolic sequences onto embedded numerical spaces. USM is composed of two Chaos Game Representations (CGR), iterated forwardly and backwardly, that can be projected into the frequency domain (FCGR). The corresponding USM coordinates can be used to compute a Chebyshev distance metric as well as k-mer frequencies, without having to recompute the embedded numeric coordinates, and, paradoxically, allowing for non-integers values of k. Results: This report advances the bijective fractal encoding by Universal Sequence Maps (USM) by resolving seeding biases affecting the iterated process. The resolution had two results, the first expected, the second an intriguing outcome: 1) full reconciliation of numeric positioning with sequence identity; and 2) uncovering the nature of USM as an efficient numeric process converging towards a steady state sequence embedding solution. We illustrate these results for genomic sequences because of the convenience of a planar representation defined by an alphabet with only 4 tokens (the 4 nucleotides). Nevertheless, the application to alphabet of arbitrary cardinality was found to be straightforward.
In-Context Reinforcement Learning via Communicative World Models
Venue: arXiv cs.LG 2025
Year: 2025

Reinforcement learning (RL) agents often struggle to generalize to new tasks and contexts without updating their parameters, mainly because their learned representations and policies are overfit to the specifics of their training environments. To boost agents' in-context RL (ICRL) ability, this work formulates ICRL as a two-agent emergent communication problem and introduces CORAL (Communicative Representation for Adaptive RL), a framework that learns a transferable communicative context by decoupling latent representation learning from control. In CORAL, an Information Agent (IA) is pre-trained as a world model on a diverse distribution of tasks. Its objective is not to maximize task reward, but to build a world model and distill its understanding into concise messages. The emergent communication protocol is shaped by a novel Causal Influence Loss, which measures the effect that the message has on the next action. During deployment, the previously trained IA serves as a fixed contextualizer for a new Control Agent (CA), which learns to solve tasks by interpreting the provided communicative context. Our experiments demonstrate that this approach enables the CA to achieve significant gains in sample efficiency and successfully perform zero-shot adaptation with the help of pre-trained IA in entirely unseen sparse-reward environments, validating the efficacy of learning a transferable communicative representation.
Watermarking Kolmogorov-Arnold Networks for Emerging Networked Applications via Activation Perturbation
Venue: arXiv cs.LG 2025
Year: 2025

With the increasing importance of protecting intellectual property in machine learning, watermarking techniques have gained significant attention. As advanced models are increasingly deployed in domains such as social network analysis, the need for robust model protection becomes even more critical. While existing watermarking methods have demonstrated effectiveness for conventional deep neural networks, they often fail to adapt to the novel architecture, Kolmogorov-Arnold Networks (KAN), which feature learnable activation functions. KAN holds strong potential for modeling complex relationships in network-structured data. However, their unique design also introduces new challenges for watermarking. Therefore, we propose a novel watermarking method, Discrete Cosine Transform-based Activation Watermarking (DCT-AW), tailored for KAN. Leveraging the learnable activation functions of KAN, our method embeds watermarks by perturbing activation outputs using discrete cosine transform, ensuring compatibility with diverse tasks and achieving task independence. Experimental results demonstrate that DCT-AW has a small impact on model performance and provides superior robustness against various watermark removal attacks, including fine-tuning, pruning, and retraining after pruning.
GLIDR: Graph-Like Inductive Logic Programming with Differentiable Reasoning
Venue: arXiv cs.AI 2025
Year: 2025

Differentiable inductive logic programming (ILP) techniques have proven effective at finding approximate rule-based solutions to link prediction and node classification problems on knowledge graphs; however, the common assumption of chain-like rule structure can hamper the performance and interpretability of existing approaches. We introduce GLIDR, a differentiable rule learning method that models the inference of logic rules with more expressive syntax than previous methods. GLIDR uses a differentiable message passing inference algorithm that generalizes previous chain-like rule learning methods to allow rules with features like branches and cycles. GLIDR has a simple and expressive rule search space which is parameterized by a limit on the maximum number of free variables that may be included in a rule. Explicit logic rules can be extracted from the weights of a GLIDR model for use with symbolic solvers. We demonstrate that GLIDR can significantly outperform existing rule learning methods on knowledge graph completion tasks and even compete with embedding methods despite the inherent disadvantage of being a structure-only prediction method. We show that rules extracted from GLIDR retain significant predictive performance, and that GLIDR is highly robust to training data noise. Finally, we demonstrate that GLIDR can be chained with deep neural networks and optimized end-to-end for rule learning on arbitrary data modalities.
ClimateSOM: A Visual Analysis Workflow for Climate Ensemble Datasets
Venue: arXiv cs.HC 2025
Year: 2025

Ensemble datasets are ever more prevalent in various scientific domains. In climate science, ensemble datasets are used to capture variability in projections under plausible future conditions including greenhouse and aerosol emissions. Each ensemble model run produces projections that are fundamentally similar yet meaningfully distinct. Understanding this variability among ensemble model runs and analyzing its magnitude and patterns is a vital task for climate scientists. In this paper, we present ClimateSOM, a visual analysis workflow that leverages a self-organizing map (SOM) and Large Language Models (LLMs) to support interactive exploration and interpretation of climate ensemble datasets. The workflow abstracts climate ensemble model runs - spatiotemporal time series - into a distribution over a 2D space that captures the variability among the ensemble model runs using a SOM. LLMs are integrated to assist in sensemaking of this SOM-defined 2D space, the basis for the visual analysis tasks. In all, ClimateSOM enables users to explore the variability among ensemble model runs, identify patterns, compare and cluster the ensemble model runs. To demonstrate the utility of ClimateSOM, we apply the workflow to an ensemble dataset of precipitation projections over California and the Northwestern United States. Furthermore, we conduct a short evaluation of our LLM integration, and conduct an expert review of the visual workflow and the insights from the case studies with six domain experts to evaluate our approach and its utility.
Learning Causal Structure Distributions for Robust Planning
Venue: arXiv cs.RO 2025
Year: 2025

Structural causal models describe how the components of a robotic system interact. They provide both structural and functional information about the relationships that are present in the system. The structural information outlines the variables among which there is interaction. The functional information describes how such interactions work, via equations or learned models. In this paper we find that learning the functional relationships while accounting for the uncertainty about the structural information leads to more robust dynamics models which improves downstream planning, while using significantly lower computational resources. This in contrast with common model-learning methods that ignore the causal structure and fail to leverage the sparsity of interactions in robotic systems. We achieve this by estimating a causal structure distribution that is used to sample causal graphs that inform the latent-space representations in an encoder-multidecoder probabilistic model. We show that our model can be used to learn the dynamics of a robot, which together with a sampling-based planner can be used to perform new tasks in novel environments, provided an objective function for the new requirement is available. We validate our method using manipulators and mobile robots in both simulation and the real-world. Additionally, we validate the learned dynamics' adaptability and increased robustness to corrupted inputs and changes in the environment, which is highly desirable in challenging real-world robotics scenarios. Video: https://youtu.be/X6k5t7OOnNc.
A Fuzzy Logic Prompting Framework for Large Language Models in Adaptive and Uncertain Tasks
Venue: arXiv cs.AI 2025
Year: 2025

We introduce a modular prompting framework that supports safer and more adaptive use of large language models (LLMs) across dynamic, user-centered tasks. Grounded in human learning theory, particularly the Zone of Proximal Development (ZPD), our method combines a natural language boundary prompt with a control schema encoded with fuzzy scaffolding logic and adaptation rules. This architecture enables LLMs to modulate behavior in response to user state without requiring fine-tuning or external orchestration. In a simulated intelligent tutoring setting, the framework improves scaffolding quality, adaptivity, and instructional alignment across multiple models, outperforming standard prompting baselines. Evaluation is conducted using rubric-based LLM graders at scale. While initially developed for education, the framework has shown promise in other interaction-heavy domains, such as procedural content generation for games. Designed for safe deployment, it provides a reusable methodology for structuring interpretable, goal-aligned LLM behavior in uncertain or evolving contexts.
Entendimento de Campanhas no Contexto da Atenção Primária à Saúde: Um Processo de Design Socialmente Consciente
Venue: arXiv cs.HC 2025
Year: 2025

This report presents the results of an exploratory analysis of the work context of Community Health Agents and Endemic Disease Control Agents in Primary Health Care (PHC), with a particular focus on Health Campaigns. To understand this context, the study adopted the Socially Aware Design framework, which employs artifacts and techniques to examine problem domains in a comprehensive and sociotechnical manner. Methods such as the Stakeholder Identification Diagram, Evaluation Frame, and Semiotic Framework were applied to identify stakeholders, anticipate challenges, and elicit social and technical requirements for the solution. Personas and Scenarios were also used to illustrate the potential impacts of a solution on various stakeholders and their life contexts within health campaigns. This report presents the analysis method, its application, and results, discussing the study's findings to inform the development of medium-fidelity prototypes for a PHC health campaign management solution.
Geometry-Aware Spiking Graph Neural Network
Venue: arXiv cs.NE 2025
Year: 2025

Graph Neural Networks (GNNs) have demonstrated impressive capabilities in modeling graph-structured data, while Spiking Neural Networks (SNNs) offer high energy efficiency through sparse, event-driven computation. However, existing spiking GNNs predominantly operate in Euclidean space and rely on fixed geometric assumptions, limiting their capacity to model complex graph structures such as hierarchies and cycles. To overcome these limitations, we propose \method{}, a novel Geometry-Aware Spiking Graph Neural Network that unifies spike-based neural dynamics with adaptive representation learning on Riemannian manifolds. \method{} features three key components: a Riemannian Embedding Layer that projects node features into a pool of constant-curvature manifolds, capturing non-Euclidean structures; a Manifold Spiking Layer that models membrane potential evolution and spiking behavior in curved spaces via geometry-consistent neighbor aggregation and curvature-based attention; and a Manifold Learning Objective that enables instance-wise geometry adaptation through jointly optimized classification and link prediction losses defined over geodesic distances. All modules are trained using Riemannian SGD, eliminating the need for backpropagation through time. Extensive experiments on multiple benchmarks show that GSG achieves superior accuracy, robustness, and energy efficiency compared to both Euclidean SNNs and manifold-based GNNs, establishing a new paradigm for curvature-aware, energy-efficient graph learning.
DualResolution Residual Architecture with Artifact Suppression for Melanocytic Lesion Segmentation
Venue: arXiv cs.CV 2025
Year: 2025

Lesion segmentation, in contrast to natural scene segmentation, requires handling subtle variations in texture and color, frequent imaging artifacts (such as hairs, rulers, and bubbles), and a critical need for precise boundary localization to aid in accurate diagnosis. The accurate delineation of melanocytic tumors in dermoscopic images is a crucial component of automated skin cancer screening systems and clinical decision support. In this paper, we present a novel dual-resolution architecture inspired by ResNet, specifically tailored for the segmentation of melanocytic tumors. Our approach incorporates a high-resolution stream that preserves fine boundary details, alongside a complementary pooled stream that captures multi-scale contextual information for robust lesion recognition. These two streams are closely integrated through boundary-aware residual connections, which inject edge information into deep feature maps, and a channel attention mechanism that adapts the model's sensitivity to color and texture variations in dermoscopic images. To tackle common imaging artifacts and the challenges posed by small clinical datasets, we introduce a lightweight artifact suppression block and a multi-task training strategy. This strategy combines the Dice-Tversky loss with an explicit boundary loss and a contrastive regularizer to enhance feature stability. This unified design enables the model to generate pixel-accurate segmentation masks without the need for extensive post-processing or complex pre-training. Extensive evaluation on public dermoscopic benchmarks reveals that our method significantly enhances boundary precision and clinically relevant segmentation metrics, outperforming traditional encoder-decoder baselines. This makes our approach a valuable component for building automated melanoma assessment systems.
Low-Rank Expert Merging for Multi-Source Domain Adaptation in Person Re-Identification
Venue: arXiv cs.CV 2025
Year: 2025

Adapting person re-identification (reID) models to new target environments remains a challenging problem that is typically addressed using unsupervised domain adaptation (UDA) methods. Recent works show that when labeled data originates from several distinct sources (e.g., datasets and cameras), considering each source separately and applying multi-source domain adaptation (MSDA) typically yields higher accuracy and robustness compared to blending the sources and performing conventional UDA. However, state-of-the-art MSDA methods learn domain-specific backbone models or require access to source domain data during adaptation, resulting in significant growth in training parameters and computational cost. In this paper, a Source-free Adaptive Gated Experts (SAGE-reID) method is introduced for person reID. Our SAGE-reID is a cost-effective, source-free MSDA method that first trains individual source-specific low-rank adapters (LoRA) through source-free UDA. Next, a lightweight gating network is introduced and trained to dynamically assign optimal merging weights for fusion of LoRA experts, enabling effective cross-domain knowledge transfer. While the number of backbone parameters remains constant across source domains, LoRA experts scale linearly but remain negligible in size (<= 2% of the backbone), reducing both the memory consumption and risk of overfitting. Extensive experiments conducted on three challenging benchmarks: Market-1501, DukeMTMC-reID, and MSMT17 indicate that SAGE-reID outperforms state-of-the-art methods while being computationally efficient.
Multi-level Advantage Credit Assignment for Cooperative Multi-Agent Reinforcement Learning
Venue: arXiv cs.AI 2025
Year: 2025

Cooperative multi-agent reinforcement learning (MARL) aims to coordinate multiple agents to achieve a common goal. A key challenge in MARL is credit assignment, which involves assessing each agent's contribution to the shared reward. Given the diversity of tasks, agents may perform different types of coordination, with rewards attributed to diverse and often overlapping agent subsets. In this work, we formalize the credit assignment level as the number of agents cooperating to obtain a reward, and address scenarios with multiple coexisting levels. We introduce a multi-level advantage formulation that performs explicit counterfactual reasoning to infer credits across distinct levels. Our method, Multi-level Advantage Credit Assignment (MACA), captures agent contributions at multiple levels by integrating advantage functions that reason about individual, joint, and correlated actions. Utilizing an attention-based framework, MACA identifies correlated agent relationships and constructs multi-level advantages to guide policy learning. Comprehensive experiments on challenging Starcraft v1\&v2 tasks demonstrate MACA's superior performance, underscoring its efficacy in complex credit assignment scenarios.