OpenRaiser/Intern-Atlas huggingface dataset:
Graph Augmentation for Cross Graph Domain Generalization
Venue: arXiv cs.LG 2025
Year: 2025

Cross-graph node classification, utilizing the abundant labeled nodes from one graph to help classify unlabeled nodes in another graph, can be viewed as a domain generalization problem of graph neural networks (GNNs) due to the structure shift commonly appearing among various graphs. Nevertheless, current endeavors for cross-graph node classification mainly focus on model training. Data augmentation approaches, a simple and easy-to-implement domain generalization technique, remain under-explored. In this paper, we develop a new graph structure augmentation for the crossgraph domain generalization problem. Specifically, low-weight edgedropping is applied to remove potential noise edges that may hinder the generalization ability of GNNs, stimulating the GNNs to capture the essential invariant information underlying different structures. Meanwhile, clustering-based edge-adding is proposed to generate invariant structures based on the node features from the same distribution. Consequently, with these augmentation techniques, the GNNs can maintain the domain invariant structure information that can improve the generalization ability. The experiments on out-ofdistribution citation network datasets verify our method achieves state-of-the-art performance among conventional augmentations.
Exact Algorithms for Minimum Dilation Triangulation
Venue: arXiv cs.CG 2025
Year: 2025

We provide a spectrum of new theoretical insights and practical results for finding a Minimum Dilation Triangulation (MDT), a natural geometric optimization problem of considerable previous attention: Given a set $P$ of $n$ points in the plane, find a triangulation $T$, such that a shortest Euclidean path in $T$ between any pair of points increases by the smallest possible factor compared to their straight-line distance. No polynomial-time algorithm is known for the problem; moreover, evaluating the objective function involves computing the sum of (possibly many) square roots. On the other hand, the problem is not known to be NP-hard. (1) We provide practically robust methods and implementations for computing an MDT for benchmark sets with up to 30,000 points in reasonable time on commodity hardware, based on new geometric insights into the structure of optimal edge sets. Previous methods only achieved results for up to $200$ points, so we extend the range of optimally solvable instances by a factor of $150$. (2) We develop scalable techniques for accurately evaluating many shortest-path queries that arise as large-scale sums of square roots, allowing us to certify exact optimal solutions, with previous work relying on (possibly inaccurate) floating-point computations. (3) We resolve an open problem by establishing a lower bound of $1.44116$ on the dilation of the regular $84$-gon (and thus for arbitrary point sets), improving the previous worst-case lower bound of $1.4308$ and greatly reducing the remaining gap to the upper bound of $1.4482$ from the literature. In the process, we provide optimal solutions for regular $n$-gons up to $n = 100$.
DenoMAE2.0: Improving Denoising Masked Autoencoders by Classifying Local Patches
Venue: arXiv cs.LG 2025
Year: 2025

We introduce DenoMAE2.0, an enhanced denoising masked autoencoder that integrates a local patch classification objective alongside traditional reconstruction loss to improve representation learning and robustness. Unlike conventional Masked Autoencoders (MAE), which focus solely on reconstructing missing inputs, DenoMAE2.0 introduces position-aware classification of unmasked patches, enabling the model to capture fine-grained local features while maintaining global coherence. This dual-objective approach is particularly beneficial in semi-supervised learning for wireless communication, where high noise levels and data scarcity pose significant challenges. We conduct extensive experiments on modulation signal classification across a wide range of signal-to-noise ratios (SNRs), from extremely low to moderately high conditions and in a low data regime. Our results demonstrate that DenoMAE2.0 surpasses its predecessor, Deno-MAE, and other baselines in both denoising quality and downstream classification accuracy. DenoMAE2.0 achieves a 1.1% improvement over DenoMAE on our dataset and 11.83%, 16.55% significant improved accuracy gains on the RadioML benchmark, over DenoMAE, for constellation diagram classification of modulation signals.
Local Differential Privacy for Tensors in Distributed Computing Systems
Venue: arXiv cs.CR 2025
Year: 2025

Tensor-valued data, increasingly common in distributed big data applications like autonomous driving and smart healthcare, poses unique challenges for privacy protection due to its multidimensional structure and the risk of losing critical structural information. Traditional local differential privacy methods, designed for scalars and matrices, are insufficient for tensors, as they fail to preserve essential relationships among tensor elements. We introduce TLDP, a novel LDP algorithm for Tensors, which employs a randomized response mechanism to perturb tensor components while maintaining structural integrity. To strike a better balance between utility and privacy, we incorporate a weight matrix that selectively protects sensitive regions. Both theoretical analysis and empirical findings from real-world datasets show that TLDP achieves superior utility while preserving privacy, making it a robust solution for high-dimensional tensor data.
JuliaGrid: An Open-Source Julia-Based Framework for Power System State Estimation
Venue: arXiv cs.SE 2025
Year: 2025

Modern electric power systems have an increasingly complex structure due to rise in power demand and integration of diverse energy sources. Monitoring these large-scale systems, which relies on efficient state estimation, represents a challenging computational task and requires efficient simulation tools for power system steady-state analyses. Motivated by this observation, we propose JuliaGrid, an open-source framework written in the Julia programming language, designed for high performance execution across multiple platforms. The framework implements observability analysis, weighted least-squares and least-absolute value estimators, bad data analysis, and various algorithms related to phasor measurements. To complete power system analysis, the framework includes power flow and optimal power flow, enabling measurement generation for the state estimation routines. Leveraging computationally efficient algorithms, JuliaGrid solves large-scale systems across all methods, offering competitive performance compared to other open-source tools. It is specifically designed for quasi-steady-state analysis, with automatic detection and reuse of computed data to boost performance. These capabilities are validated on systems with 10000, 20000 and 70000 buses.
Causal AI-based Root Cause Identification: Research to Practice at Scale
Venue: arXiv cs.LG 2025
Year: 2025

Modern applications are built as large, distributed systems spanning numerous modules, teams, and data centers. Despite robust engineering and recovery strategies, failures and performance issues remain inevitable, risking significant disruptions and affecting end users. Rapid and accurate root cause identification is therefore vital to ensure system reliability and maintain key service metrics. We have developed a novel causality-based Root Cause Identification (RCI) algorithm that emphasizes causation over correlation. This algorithm has been integrated into IBM Instana-bridging research to practice at scale-and is now in production use by enterprise customers. By leveraging "causal AI," Instana stands apart from typical Application Performance Management (APM) tools, pinpointing issues in near real-time. This paper highlights Instana's advanced failure diagnosis capabilities, discussing both the theoretical underpinnings and practical implementations of the RCI algorithm. Real-world examples illustrate how our causality-based approach enhances reliability and performance in today's complex system landscapes.
Citrus: Leveraging Expert Cognitive Pathways in a Medical Language Model for Advanced Medical Decision Support
Venue: arXiv cs.AI 2025
Year: 2025

Large language models (LLMs), particularly those with reasoning capabilities, have rapidly advanced in recent years, demonstrating significant potential across a wide range of applications. However, their deployment in healthcare, especially in disease reasoning tasks, is hindered by the challenge of acquiring expert-level cognitive data. In this paper, we introduce Citrus, a medical language model that bridges the gap between clinical expertise and AI reasoning by emulating the cognitive processes of medical experts. The model is trained on a large corpus of simulated expert disease reasoning data, synthesized using a novel approach that accurately captures the decision-making pathways of clinicians. This approach enables Citrus to better simulate the complex reasoning processes involved in diagnosing and treating medical conditions. To further address the lack of publicly available datasets for medical reasoning tasks, we release the last-stage training data, including a custom-built medical diagnostic dialogue dataset. This open-source contribution aims to support further research and development in the field. Evaluations using authoritative benchmarks such as MedQA, covering tasks in medical reasoning and language understanding, show that Citrus achieves superior performance compared to other models of similar size. These results highlight Citrus potential to significantly enhance medical decision support systems, providing a more accurate and efficient tool for clinical decision-making.
Neural Network Graph Similarity Computation Based on Graph Fusion
Venue: arXiv cs.IR 2025
Year: 2025

Graph similarity learning, crucial for tasks such as graph classification and similarity search, focuses on measuring the similarity between two graph-structured entities. The core challenge in this field is effectively managing the interactions between graphs. Traditional methods often entail separate, redundant computations for each graph pair, leading to unnecessary complexity. This paper revolutionizes the approach by introducing a parallel graph interaction method called graph fusion. By merging the node sequences of graph pairs into a single large graph, our method leverages a global attention mechanism to facilitate interaction computations and to harvest cross-graph insights. We further assess the similarity between graph pairs at two distinct levels-graph-level and node-level-introducing two innovative, yet straightforward, similarity computation algorithms. Extensive testing across five public datasets shows that our model not only outperforms leading baseline models in graph-to-graph classification and regression tasks but also sets a new benchmark for performance and efficiency. The code for this paper is open-source and available at https://github.com/LLiRarry/GFM-code.git
Mapping of Subjective Accounts into Interpreted Clusters (MOSAIC): Topic Modelling and LLM applied to Stroboscopic Phenomenology
Venue: arXiv cs.CL 2025
Year: 2025

Stroboscopic light stimulation (SLS) on closed eyes typically induces simple visual hallucinations (VHs), characterised by vivid, geometric and colourful patterns. A dataset of 862 sentences, extracted from 422 open subjective reports, was recently compiled as part of the Dreamachine programme (Collective Act, 2022), an immersive multisensory experience that combines SLS and spatial sound in a collective setting. Although open reports extend the range of reportable phenomenology, their analysis presents significant challenges, particularly in systematically identifying patterns. To address this challenge, we implemented a data-driven approach leveraging Large Language Models and Topic Modelling to uncover and interpret latent experiential topics directly from the Dreamachine's text-based reports. Our analysis confirmed the presence of simple VHs typically documented in scientific studies of SLS, while also revealing experiences of altered states of consciousness and complex hallucinations. Building on these findings, our computational approach expands the systematic study of subjective experience by enabling data-driven analyses of open-ended phenomenological reports, capturing experiences not readily identified through standard questionnaires. By revealing rich and multifaceted aspects of experiences, our study broadens our understanding of stroboscopically-induced phenomena while highlighting the potential of Natural Language Processing and Large Language Models in the emerging field of computational (neuro)phenomenology. More generally, this approach provides a practically applicable methodology for uncovering subtle hidden patterns of subjective experience across diverse research domains.
From Vision to Sound: Advancing Audio Anomaly Detection with Vision-Based Algorithms
Venue: arXiv cs.SD 2025
Year: 2025

Recent advances in Visual Anomaly Detection (VAD) have introduced sophisticated algorithms leveraging embeddings generated by pre-trained feature extractors. Inspired by these developments, we investigate the adaptation of such algorithms to the audio domain to address the problem of Audio Anomaly Detection (AAD). Unlike most existing AAD methods, which primarily classify anomalous samples, our approach introduces fine-grained temporal-frequency localization of anomalies within the spectrogram, significantly improving explainability. This capability enables a more precise understanding of where and when anomalies occur, making the results more actionable for end users. We evaluate our approach on industrial and environmental benchmarks, demonstrating the effectiveness of VAD techniques in detecting anomalies in audio signals. Moreover, they improve explainability by enabling localized anomaly identification, making audio anomaly detection systems more interpretable and practical.
Towards softerware: Enabling personalization of interactive data representations for users with disabilities
Venue: arXiv cs.HC 2025
Year: 2025

Accessible design for some may still produce barriers for others. This tension, called access friction, creates challenges for both designers and end-users with disabilities. To address this, we present the concept of softerware, a system design approach that provides end users with agency to meaningfully customize and adapt interfaces to their needs. To apply softerware to visualization, we assembled 195 data visualization customization options centered on the barriers we expect users with disabilities will experience. We built a prototype that applies a subset of these options and interviewed practitioners for feedback. Lastly, we conducted a design probe study with blind and low vision accessibility professionals to learn more about their challenges and visions for softerware. We observed access frictions between our participant's designs and they expressed that for softerware's success, current and future systems must be designed with accessible defaults, interoperability, persistence, and respect for a user's perceived effort-to-outcome ratio.
Property Testing in Bounded Degree Hypergraphs
Venue: arXiv cs.CC 2025
Year: 2025

We extend the bounded degree graph model for property testing introduced by Goldreich and Ron (Algorithmica, 2002) to hypergraphs. In this framework, we analyse the query complexity of three fundamental hypergraph properties: colorability, $k$-partiteness, and independence number. We present a randomized algorithm for testing $k$-partiteness within families of $k$-uniform $n$-vertex hypergraphs of bounded treewidth whose query complexity does not depend on $n$. In addition, we prove optimal lower bounds of $Ω(n)$ on the query complexity of testing algorithms for $k$-colorability, $k$-partiteness, and independence number in $k$-uniform $n$-vertex hypergraphs of bounded degree. For each of these properties, we consider the problem of explicitly constructing $k$-uniform hypergraphs of bounded degree that differ in $Θ(n)$ hyperedges from any hypergraph satisfying the property, but where violations of the latter cannot be detected in any neighborhood of $o(n)$ vertices.
Monte Carlo Temperature: a robust sampling strategy for LLM's uncertainty quantification methods
Venue: arXiv cs.CL 2025
Year: 2025

Uncertainty quantification (UQ) in Large Language Models (LLMs) is essential for their safe and reliable deployment, particularly in critical applications where incorrect outputs can have serious consequences. Current UQ methods typically rely on querying the model multiple times using non-zero temperature sampling to generate diverse outputs for uncertainty estimation. However, the impact of selecting a given temperature parameter is understudied, and our analysis reveals that temperature plays a fundamental role in the quality of uncertainty estimates. The conventional approach of identifying optimal temperature values requires expensive hyperparameter optimization (HPO) that must be repeated for each new model-dataset combination. We propose Monte Carlo Temperature (MCT), a robust sampling strategy that eliminates the need for temperature calibration. Our analysis reveals that: 1) MCT provides more robust uncertainty estimates across a wide range of temperatures, 2) MCT improves the performance of UQ methods by replacing fixed-temperature strategies that do not rely on HPO, and 3) MCT achieves statistical parity with oracle temperatures, which represent the ideal outcome of a well-tuned but computationally expensive HPO process. These findings demonstrate that effective UQ can be achieved without the computational burden of temperature parameter calibration.
When Benchmarks Talk: Re-Evaluating Code LLMs with Interactive Feedback
Venue: arXiv cs.HC 2025
Year: 2025

Programming is a fundamentally interactive process, yet coding assistants are often evaluated using static benchmarks that fail to measure how well models collaborate with users. We introduce an interactive evaluation pipeline to examine how LLMs incorporate different types of feedback in a collaborative setting. Specifically, we perturb static coding benchmarks so that the code model must interact with a simulated user to retrieve key information about the problem. We find that interaction significantly affects model performance, as the relative rankings of 10 models across 3 datasets often vary between static and interactive settings, despite models being fairly robust to feedback that contains errors. We also observe that even when different feedback types are equally effective with respect to performance, they can impact model behaviors such as (1) how models respond to higher- vs. lower-quality feedback and (2) whether models prioritize aesthetic vs. functional edits. Our work aims to "re-evaluate" model coding capabilities through an interactive lens toward bridging the gap between existing evaluations and real-world usage.
MedKAN: An Advanced Kolmogorov-Arnold Network for Medical Image Classification
Venue: arXiv cs.CV 2025
Year: 2025

Recent advancements in deep learning for image classification predominantly rely on convolutional neural networks (CNNs) or Transformer-based architectures. However, these models face notable challenges in medical imaging, particularly in capturing intricate texture details and contextual features. Kolmogorov-Arnold Networks (KANs) represent a novel class of architectures that enhance nonlinear transformation modeling, offering improved representation of complex features. In this work, we present MedKAN, a medical image classification framework built upon KAN and its convolutional extensions. MedKAN features two core modules: the Local Information KAN (LIK) module for fine-grained feature extraction and the Global Information KAN (GIK) module for global context integration. By combining these modules, MedKAN achieves robust feature modeling and fusion. To address diverse computational needs, we introduce three scalable variants--MedKAN-S, MedKAN-B, and MedKAN-L. Experimental results on nine public medical imaging datasets demonstrate that MedKAN achieves superior performance compared to CNN- and Transformer-based models, highlighting its effectiveness and generalizability in medical image analysis.
Rank1: Test-Time Compute for Reranking in Information Retrieval
Venue: arXiv cs.IR 2025
Year: 2025

We introduce Rank1, the first reranking model trained to take advantage of test-time compute. Rank1 demonstrates the applicability within retrieval of using a reasoning language model (i.e. OpenAI's o1, Deepseek's R1, etc.) for distillation in order to rapidly improve the performance of a smaller model. We gather and open-source a dataset of more than 600,000 examples of R1 reasoning traces from queries and passages in MS MARCO. Models trained on this dataset show: (1) state-of-the-art performance on advanced reasoning and instruction following datasets; (2) work remarkably well out of distribution due to the ability to respond to user-input prompts; and (3) have explainable reasoning chains that can be given to users or RAG-based systems. Further, we demonstrate that quantized versions of these models retain strong performance while using less compute/memory. Overall, Rank1 shows that test-time compute allows for a fundamentally new type of explainable and performant reranker model for search.
Is OpenAlex Suitable for Research Quality Evaluation and Which Citation Indicator is Best?
Venue: arXiv cs.DL 2025
Year: 2025

This article compares (1) citation analysis with OpenAlex and Scopus, testing their citation counts, document type/coverage and subject classifications and (2) three citation-based indicators: raw counts, (field and year) Normalised Citation Scores (NCS) and Normalised Log-transformed Citation Scores (NLCS). Methods (1&2): The indicators calculated from 28.6 million articles were compared through 8,704 correlations on two gold standards for 97,816 UK Research Excellence Framework (REF) 2021 articles. The primary gold standard is ChatGPT scores, and the secondary is the average REF2021 expert review score for the department submitting the article. Results: (1) OpenAlex provides better citation counts than Scopus and its inclusive document classification/scope does not seem to cause substantial field normalisation problems. The broadest OpenAlex classification scheme provides the best indicators. (2) Counterintuitively, raw citation counts are at least as good as nearly all field normalised indicators, and better for single years, and NCS is better than NLCS. (1&2) There are substantial field differences. Thus, (1) OpenAlex is suitable for citation analysis in most fields and (2) the major citation-based indicators seem to work counterintuitively compared to quality judgements. Field normalisation seems ineffective because more cited fields tend to produce higher quality work, affecting interdisciplinary research or within-field topic differences.