OpenRaiser/Intern-Atlas huggingface dataset:
Resolution-Agnostic Transformer-based Climate Downscaling
Venue: arXiv cs.CV 2024
Year: 2024

Understanding future weather changes at regional and local scales is crucial for planning and decision-making, particularly in the context of extreme weather events, as well as for broader applications in agriculture, insurance, and infrastructure development. However, the computational cost of downscaling Global Climate Models (GCMs) to the fine resolutions needed for such applications presents a significant barrier. Drawing on advancements in weather forecasting models, this study introduces a cost-efficient downscaling method using a pretrained Earth Vision Transformer (Earth ViT) model. Initially trained on ERA5 data to downscale from 50 km to 25 km resolution, the model is then tested on the higher resolution BARRA-SY dataset at a 3 km resolution. Remarkably, it performs well without additional training, demonstrating its ability to generalize across different resolutions. This approach holds promise for generating large ensembles of regional climate simulations by downscaling GCMs with varying input resolutions without incurring additional training costs. Ultimately, this method could provide more comprehensive estimates of potential future changes in key climate variables, aiding in effective planning for extreme weather events and climate change adaptation strategies.
FastGrasp: Efficient Grasp Synthesis with Diffusion
Venue: arXiv cs.RO 2024
Year: 2024

Effectively modeling the interaction between human hands and objects is challenging due to the complex physical constraints and the requirement for high generation efficiency in applications. Prior approaches often employ computationally intensive two-stage approaches, which first generate an intermediate representation, such as contact maps, followed by an iterative optimization procedure that updates hand meshes to capture the hand-object relation. However, due to the high computation complexity during the optimization stage, such strategies often suffer from low efficiency in inference. To address this limitation, this work introduces a novel diffusion-model-based approach that generates the grasping pose in a one-stage manner. This allows us to significantly improve generation speed and the diversity of generated hand poses. In particular, we develop a Latent Diffusion Model with an Adaptation Module for object-conditioned hand pose generation and a contact-aware loss to enforce the physical constraints between hands and objects. Extensive experiments demonstrate that our method achieves faster inference, higher diversity, and superior pose quality than state-of-the-art approaches. Code is available at \href{https://github.com/wuxiaofei01/FastGrasp}{https://github.com/wuxiaofei01/FastGrasp.}
Astro-HEP-BERT: A bidirectional language model for studying the meanings of concepts in astrophysics and high energy physics
Venue: arXiv cs.CL 2024
Year: 2024

I present Astro-HEP-BERT, a transformer-based language model specifically designed for generating contextualized word embeddings (CWEs) to study the meanings of concepts in astrophysics and high-energy physics. Built on a general pretrained BERT model, Astro-HEP-BERT underwent further training over three epochs using the Astro-HEP Corpus, a dataset I curated from 21.84 million paragraphs extracted from more than 600,000 scholarly articles on arXiv, all belonging to at least one of these two scientific domains. The project demonstrates both the effectiveness and feasibility of adapting a bidirectional transformer for applications in the history, philosophy, and sociology of science (HPSS). The entire training process was conducted using freely available code, pretrained weights, and text inputs, completed on a single MacBook Pro Laptop (M2/96GB). Preliminary evaluations indicate that Astro-HEP-BERT's CWEs perform comparably to domain-adapted BERT models trained from scratch on larger datasets for domain-specific word sense disambiguation and induction and related semantic change analyses. This suggests that retraining general language models for specific scientific domains can be a cost-effective and efficient strategy for HPSS researchers, enabling high performance without the need for extensive training from scratch.
Random Permutation Codes: Lossless Source Coding of Non-Sequential Data
Venue: arXiv cs.IT 2024
Year: 2024

This thesis deals with the problem of communicating and storing non-sequential data. We investigate this problem through the lens of lossless source coding, also sometimes referred to as lossless compression, from both an algorithmic and information-theoretic perspective. Lossless compression algorithms typically preserve the ordering in which data points are compressed. However, there are data types where order is not meaningful, such as collections of files, rows in a database, nodes in a graph, and, notably, datasets in machine learning applications. Compressing with traditional algorithms is possible if we pick an order for the elements and communicate the corresponding ordered sequence. However, unless the order information is somehow removed during the encoding process, this procedure will be sub-optimal, because the order contains information and therefore more bits are used to represent the source than are truly necessary. In this work we give a formal definition for non-sequential objects as random sets of equivalent sequences, which we refer to as Combinatorial Random Variables (CRVs). The definition of equivalence, formalized as an equivalence relation, establishes the non-sequential data type represented by the CRV. The achievable rates of CRVs is fully characterized as a function of the equivalence relation as well as the data distribution. The optimal rates of CRVs are achieved within the family of Random Permutation Codes (RPCs) developed in later chapters. RPCs randomly select one-of-many possible sequences that can represent the instance of the CRV. Specialized RPCs are given for the case of multisets, graphs, and partitions/clusterings, providing new algorithms for compression of databases, social networks, and web data in the JSON file format.
ReVisionLLM: Recursive Vision-Language Model for Temporal Grounding in Hour-Long Videos
Venue: arXiv cs.CV 2024
Year: 2024

Large language models (LLMs) excel at retrieving information from lengthy text, but their vision-language counterparts (VLMs) face difficulties with hour-long videos, especially for temporal grounding. Specifically, these VLMs are constrained by frame limitations, often losing essential temporal details needed for accurate event localization in extended video content. We propose ReVisionLLM, a recursive vision-language model designed to locate events in hour-long videos. Inspired by human search strategies, our model initially targets broad segments of interest, progressively revising its focus to pinpoint exact temporal boundaries. Our model can seamlessly handle videos of vastly different lengths, from minutes to hours. We also introduce a hierarchical training strategy that starts with short clips to capture distinct events and progressively extends to longer videos. To our knowledge, ReVisionLLM is the first VLM capable of temporal grounding in hour-long videos, outperforming previous state-of-the-art methods across multiple datasets by a significant margin (+2.6% R1@0.1 on MAD). The code is available at https://github.com/Tanveer81/ReVisionLLM.
A Reproducibility and Generalizability Study of Large Language Models for Query Generation
Venue: arXiv cs.IR 2024
Year: 2024

Systematic literature reviews (SLRs) are a cornerstone of academic research, yet they are often labour-intensive and time-consuming due to the detailed literature curation process. The advent of generative AI and large language models (LLMs) promises to revolutionize this process by assisting researchers in several tedious tasks, one of them being the generation of effective Boolean queries that will select the publications to consider including in a review. This paper presents an extensive study of Boolean query generation using LLMs for systematic reviews, reproducing and extending the work of Wang et al. and Alaniz et al. Our study investigates the replicability and reliability of results achieved using ChatGPT and compares its performance with open-source alternatives like Mistral and Zephyr to provide a more comprehensive analysis of LLMs for query generation. Therefore, we implemented a pipeline, which automatically creates a Boolean query for a given review topic by using a previously defined LLM, retrieves all documents for this query from the PubMed database and then evaluates the results. With this pipeline we first assess whether the results obtained using ChatGPT for query generation are reproducible and consistent. We then generalize our results by analyzing and evaluating open-source models and evaluating their efficacy in generating Boolean queries. Finally, we conduct a failure analysis to identify and discuss the limitations and shortcomings of using LLMs for Boolean query generation. This examination helps to understand the gaps and potential areas for improvement in the application of LLMs to information retrieval tasks. Our findings highlight the strengths, limitations, and potential of LLMs in the domain of information retrieval and literature review automation.
SwissADT: An Audio Description Translation System for Swiss Languages
Venue: arXiv cs.CL 2024
Year: 2024

Audio description (AD) is a crucial accessibility service provided to blind persons and persons with visual impairment, designed to convey visual information in acoustic form. Despite recent advancements in multilingual machine translation research, the lack of well-crafted and time-synchronized AD data impedes the development of audio description translation (ADT) systems that address the needs of multilingual countries such as Switzerland. Furthermore, since the majority of ADT systems rely solely on text, uncertainty exists as to whether incorporating visual information from the corresponding video clips can enhance the quality of ADT outputs. In this work, we present SwissADT, the first ADT system implemented for three main Swiss languages and English. By collecting well-crafted AD data augmented with video clips in German, French, Italian, and English, and leveraging the power of Large Language Models (LLMs), we aim to enhance information accessibility for diverse language populations in Switzerland by automatically translating AD scripts to the desired Swiss language. Our extensive experimental ADT results, composed of both automatic and human evaluations of ADT quality, demonstrate the promising capability of SwissADT for the ADT task. We believe that combining human expertise with the generation power of LLMs can further enhance the performance of ADT systems, ultimately benefiting a larger multilingual target population.
Leveraging LLMs for Legacy Code Modernization: Challenges and Opportunities for LLM-Generated Documentation
Venue: arXiv cs.LG 2024
Year: 2024

Legacy software systems, written in outdated languages like MUMPS and mainframe assembly, pose challenges in efficiency, maintenance, staffing, and security. While LLMs offer promise for modernizing these systems, their ability to understand legacy languages is largely unknown. This paper investigates the utilization of LLMs to generate documentation for legacy code using two datasets: an electronic health records (EHR) system in MUMPS and open-source applications in IBM mainframe Assembly Language Code (ALC). We propose a prompting strategy for generating line-wise code comments and a rubric to evaluate their completeness, readability, usefulness, and hallucination. Our study assesses the correlation between human evaluations and automated metrics, such as code complexity and reference-based metrics. We find that LLM-generated comments for MUMPS and ALC are generally hallucination-free, complete, readable, and useful compared to ground-truth comments, though ALC poses challenges. However, no automated metrics strongly correlate with comment quality to predict or measure LLM performance. Our findings highlight the limitations of current automated measures and the need for better evaluation metrics for LLM-generated documentation in legacy systems.
Differentiable Biomechanics for Markerless Motion Capture in Upper Limb Stroke Rehabilitation: A Comparison with Optical Motion Capture
Venue: arXiv cs.CV 2024
Year: 2024

Marker-based Optical Motion Capture (OMC) paired with biomechanical modeling is currently considered the most precise and accurate method for measuring human movement kinematics. However, combining differentiable biomechanical modeling with Markerless Motion Capture (MMC) offers a promising approach to motion capture in clinical settings, requiring only minimal equipment, such as synchronized webcams, and minimal effort for data collection. This study compares key kinematic outcomes from biomechanically modeled MMC and OMC data in 15 stroke patients performing the drinking task, a functional task recommended for assessing upper limb movement quality. We observed a high level of agreement in kinematic trajectories between MMC and OMC, as indicated by high correlations (median r above 0.95 for the majority of kinematic trajectories) and median RMSE values ranging from 2-5 degrees for joint angles, 0.04 m/s for end-effector velocity, and 6 mm for trunk displacement. Trial-to-trial biases between OMC and MMC were consistent within participant sessions, with interquartile ranges of bias around 1-3 degrees for joint angles, 0.01 m/s in end-effector velocity, and approximately 3mm for trunk displacement. Our findings indicate that our MMC for arm tracking is approaching the accuracy of marker-based methods, supporting its potential for use in clinical settings. MMC could provide valuable insights into movement rehabilitation in stroke patients, potentially enhancing the effectiveness of rehabilitation strategies.
FloAt: Flow Warping of Self-Attention for Clothing Animation Generation
Venue: arXiv cs.CV 2024
Year: 2024

We propose a diffusion model-based approach, FloAtControlNet to generate cinemagraphs composed of animations of human clothing. We focus on human clothing like dresses, skirts and pants. The input to our model is a text prompt depicting the type of clothing and the texture of clothing like leopard, striped, or plain, and a sequence of normal maps that capture the underlying animation that we desire in the output. The backbone of our method is a normal-map conditioned ControlNet which is operated in a training-free regime. The key observation is that the underlying animation is embedded in the flow of the normal maps. We utilize the flow thus obtained to manipulate the self-attention maps of appropriate layers. Specifically, the self-attention maps of a particular layer and frame are recomputed as a linear combination of itself and the self-attention maps of the same layer and the previous frame, warped by the flow on the normal maps of the two frames. We show that manipulating the self-attention maps greatly enhances the quality of the clothing animation, making it look more natural as well as suppressing the background artifacts. Through extensive experiments, we show that the method proposed beats all baselines both qualitatively in terms of visual results and user study. Specifically, our method is able to alleviate the background flickering that exists in other diffusion model-based baselines that we consider. In addition, we show that our method beats all baselines in terms of RMSE and PSNR computed using the input normal map sequences and the normal map sequences obtained from the output RGB frames. Further, we show that well-established evaluation metrics like LPIPS, SSIM, and CLIP scores that are generally for visual quality are not necessarily suitable for capturing the subtle motions in human clothing animations.
Financial Risk Assessment via Long-term Payment Behavior Sequence Folding
Venue: arXiv cs.CY 2024
Year: 2024

Online inclusive financial services encounter significant financial risks due to their expansive user base and low default costs. By real-world practice, we reveal that utilizing longer-term user payment behaviors can enhance models' ability to forecast financial risks. However, learning long behavior sequences is non-trivial for deep sequential models. Additionally, the diverse fields of payment behaviors carry rich information, requiring thorough exploitation. These factors collectively complicate the task of long-term user behavior modeling. To tackle these challenges, we propose a Long-term Payment Behavior Sequence Folding method, referred to as LBSF. In LBSF, payment behavior sequences are folded based on merchants, using the merchant field as an intrinsic grouping criterion, which enables informative parallelism without reliance on external knowledge. Meanwhile, we maximize the utility of payment details through a multi-field behavior encoding mechanism. Subsequently, behavior aggregation at the merchant level followed by relational learning across merchants facilitates comprehensive user financial representation. We evaluate LBSF on the financial risk assessment task using a large-scale real-world dataset. The results demonstrate that folding long behavior sequences based on internal behavioral cues effectively models long-term patterns and changes, thereby generating more accurate user financial profiles for practical applications.
SPAC-Net: Rethinking Point Cloud Completion with Structural Prior
Venue: arXiv cs.CV 2024
Year: 2024

Point cloud completion aims to infer a complete shape from its partial observation. Many approaches utilize a pure encoderdecoder paradigm in which complete shape can be directly predicted by shape priors learned from partial scans, however, these methods suffer from the loss of details inevitably due to the feature abstraction issues. In this paper, we propose a novel framework,termed SPAC-Net, that aims to rethink the completion task under the guidance of a new structural prior, we call it interface. Specifically, our method first investigates Marginal Detector (MAD) module to localize the interface, defined as the intersection between the known observation and the missing parts. Based on the interface, our method predicts the coarse shape by learning the displacement from the points in interface move to their corresponding position in missing parts. Furthermore, we devise an additional Structure Supplement(SSP) module before the upsampling stage to enhance the structural details of the coarse shape, enabling the upsampling module to focus more on the upsampling task. Extensive experiments have been conducted on several challenging benchmarks, and the results demonstrate that our method outperforms existing state-of-the-art approaches.
ReXrank: A Public Leaderboard for AI-Powered Radiology Report Generation
Venue: arXiv cs.CV 2024
Year: 2024

AI-driven models have demonstrated significant potential in automating radiology report generation for chest X-rays. However, there is no standardized benchmark for objectively evaluating their performance. To address this, we present ReXrank, https://rexrank.ai, a public leaderboard and challenge for assessing AI-powered radiology report generation. Our framework incorporates ReXGradient, the largest test dataset consisting of 10,000 studies, and three public datasets (MIMIC-CXR, IU-Xray, CheXpert Plus) for report generation assessment. ReXrank employs 8 evaluation metrics and separately assesses models capable of generating only findings sections and those providing both findings and impressions sections. By providing this standardized evaluation framework, ReXrank enables meaningful comparisons of model performance and offers crucial insights into their robustness across diverse clinical settings. Beyond its current focus on chest X-rays, ReXrank's framework sets the stage for comprehensive evaluation of automated reporting across the full spectrum of medical imaging.
Opportunities of Reinforcement Learning in South Africa's Just Transition
Venue: arXiv cs.CY 2024
Year: 2024

South Africa stands at a crucial juncture, grappling with interwoven socio-economic challenges such as poverty, inequality, unemployment, and the looming climate crisis. The government's Just Transition framework aims to enhance climate resilience, achieve net-zero greenhouse gas emissions by 2050, and promote social inclusion and poverty eradication. According to the Presidential Commission on the Fourth Industrial Revolution, artificial intelligence technologies offer significant promise in addressing these challenges. This paper explores the overlooked potential of Reinforcement Learning (RL) in supporting South Africa's Just Transition. It examines how RL can enhance agriculture and land-use practices, manage complex, decentralised energy networks, and optimise transportation and logistics, thereby playing a critical role in achieving a just and equitable transition to a low-carbon future for all South Africans. We provide a roadmap as to how other researchers in the field may be able to contribute to these pressing problems.
Gradient-Weighted Feature Back-Projection: A Fast Alternative to Feature Distillation in 3D Gaussian Splatting
Venue: arXiv cs.CV 2024
Year: 2024

We introduce a training-free method for feature field rendering in Gaussian splatting. Our approach back-projects 2D features into pre-trained 3D Gaussians, using a weighted sum based on each Gaussian's influence in the final rendering. While most training-based feature field rendering methods excel at 2D segmentation but perform poorly at 3D segmentation without post-processing, our method achieves high-quality results in both 2D and 3D segmentation. Experimental results demonstrate that our approach is fast, scalable, and offers performance comparable to training-based methods.
S$^2$ALM: Sequence-Structure Pre-trained Large Language Model for Comprehensive Antibody Representation Learning
Venue: arXiv cs.LG 2024
Year: 2024

Antibodies safeguard our health through their precise and potent binding to specific antigens, demonstrating promising therapeutic efficacy in the treatment of numerous diseases, including COVID-19. Recent advancements in biomedical language models have shown the great potential to interpret complex biological structures and functions. However, existing antibody specific models have a notable limitation that they lack explicit consideration for antibody structural information, despite the fact that both 1D sequence and 3D structure carry unique and complementary insights into antibody behavior and functionality. This paper proposes Sequence-Structure multi-level pre-trained Antibody Language Model (S$^2$ALM), combining holistic sequential and structural information in one unified, generic antibody foundation model. We construct a hierarchical pre-training paradigm incorporated with two customized multi-level training objectives to facilitate the modeling of comprehensive antibody representations. S$^2$ALM's representation space uncovers inherent functional binding mechanisms, biological evolution properties and structural interaction patterns. Pre-trained over 75 million sequences and 11.7 million structures, S$^2$ALM can be adopted for diverse downstream tasks: accurately predicting antigen-antibody binding affinities, precisely distinguishing B cell maturation stages, identifying antibody crucial binding positions, and specifically designing novel coronavirus-binding antibodies. Remarkably, S$^2$ALM outperforms well-established and renowned baselines and sets new state-of-the-art performance across extensive antibody specific understanding and generation tasks. S$^2$ALM's ability to model comprehensive and generalized representations further positions its potential to advance real-world therapeutic antibody development, potentially addressing unmet academic, industrial, and clinical needs.