OpenRaiser/Intern-Atlas huggingface dataset:
Dynamical modeling of nonlinear latent factors in multiscale neural activity with real-time inference
Venue: Conference NeurIPS 2025
Year: 2025

Real-time decoding of target variables from multiple simultaneously recorded neural time-series modalities, such as discrete spiking activity and continuous field potentials, is important across various neuroscience applications. However, a major challenge for doing so is that different neural modalities can have different timescales (i.e., sampling rates) and different probabilistic distributions, or can even be missing at some time-steps. Existing nonlinear models of multimodal neural activity do not address different timescales or missing samples across modalities. Further, some of these models do not allow for real-time decoding. Here, we develop a learning framework that can enable real-time recursive decoding while nonlinearly aggregating information across multiple modalities with different timescales and distributions and with missing samples. This framework consists of 1) a multiscale encoder that nonlinearly aggregates information after learning within-modality dynamics to handle different timescales and missing samples in real time, 2) a multiscale dynamical backbone that extracts multimodal temporal dynamics and enables real-time recursive decoding, and 3) modality-specific decoders to account for different probabilistic distributions across modalities. In both simulations and three distinct multiscale brain datasets, we show that our model can aggregate information across modalities with different timescales and distributions and missing samples to improve real-time target decoding. Further, our method outperforms various linear and nonlinear multimodal benchmarks in doing so.
Preference Learning with Lie Detectors can Induce Honesty or Evasion
Venue: Conference NeurIPS 2025
Year: 2025

As AI systems become more capable, deceptive behaviors can undermine evaluation and mislead users at deployment. Recent work has shown that lie detectors can accurately classify deceptive behavior, but they are not typically used in the training pipeline due to concerns around contamination and objective hacking. We examine these concerns by incorporating a lie detector into the labelling step of LLM post-training and evaluating whether the learned policy is genuinely more honest, or instead learns to fool the lie detector while remaining deceptive. Using DolusChat, a novel 65k-example dataset with paired truthful/deceptive responses, we identify three key factors that determine the honesty of learned policies: amount of exploration during preference learning, lie detector accuracy, and KL regularization strength. We find that preference learning with lie detectors and GRPO can lead to policies which evade lie detectors, with deception rates of over 85\%. However, if the lie detector true positive rate (TPR) or KL regularization is sufficiently high, GRPO learns honest policies. In contrast, off-policy algorithms (DPO) consistently lead to deception rates under 25\% for realistic TPRs. Our results illustrate a more complex picture than previously assumed: depending on the context, lie-detector-enhanced training can be a powerful tool for scalable oversight, or a counterproductive method encouraging undetectable misalignment.
CORAL: Disentangling Latent Representations in Long-Tailed Diffusion
Venue: Conference NeurIPS 2025
Year: 2025

Diffusion models have achieved impressive performance in generating high-quality and diverse synthetic data. However, their success typically assumes a class-balanced training distribution. In real-world settings, multi-class data often follow a long-tailed distribution, where standard diffusion models struggle -- producing low-diversity and lower-quality samples for tail classes. While this degradation is well-documented, its underlying cause remains poorly understood. In this work, we investigate the behavior of diffusion models trained on long-tailed datasets and identify a key issue: the latent representations (from the bottleneck layer of the U-Net) for tail class subspaces exhibit significant overlap with those of head classes, leading to feature borrowing and poor generation quality. Importantly, we show that this is not merely due to limited data per class, but that the relative class imbalance significantly contributes to this phenomenon. To address this, we propose COntrastive Regularization for Aligning Latents (CORAL), a contrastive latent alignment framework that leverages supervised contrastive losses to encourage well-separated latent class representations. Experiments demonstrate that CORAL significantly improves both the diversity and visual quality of samples generated for tail classes relative to state-of-the-art methods.
UniGen: Enhanced Training & Test-Time Strategies for Unified Multimodal Understanding and Generation
Venue: Conference NeurIPS 2025
Year: 2025

We introduce UniGen, a unified multimodal large language model (MLLM) capable of image understanding and generation. We study the full training pipeline of UniGen from a data-centric perspective, including multi-stage pre-training, supervised fine-tuning, and direct preference optimization. More importantly, we propose a new Chain-of-Thought Verification (CoT-V) strategy for test-time scaling, which significantly boosts UniGen's image generation quality using a simple Best-of-N test-time strategy. Specifically, CoT-V enables UniGen to act as both image generator and verifier at test time, assessing the semantic alignment between a text prompt and its generated image in a step-by-step CoT manner. Trained entirely on open-source datasets across all stages, UniGen achieves state-of-the-art performance on a range of image understanding and generation benchmarks, with a final score of 0.78 on GenEval and 85.19 on DPG-Bench. Through extensive ablation studies, our work provides actionable insights and addresses key challenges in the full life cycle of building unified MLLMs, contributing meaningful directions to the future research.
Neuro-Spectral Architectures for Causal Physics-Informed Networks
Venue: Conference NeurIPS 2025
Year: 2025

Physics-Informed Neural Networks (PINNs) have emerged as a powerful framework for solving partial differential equations (PDEs). However, standard MLP-based PINNs often fail to converge when dealing with complex initial value problems, leading to solutions that violate causality and suffer from a spectral bias towards low-frequency components. To address these issues, we introduce NeuSA (Neuro-Spectral Architectures), a novel class of PINNs inspired by classical spectral methods, designed to solve linear and nonlinear PDEs with variable coefficients. NeuSA learns a projection of the underlying PDE onto a spectral basis, leading to a finite-dimensional representation of the dynamics which is then integrated with an adapted Neural ODE (NODE). This allows us to overcome spectral bias, by leveraging the high-frequency components enabled by the spectral representation; to enforce causality, by inheriting the causal structure of NODEs, and to start training near the target solution, by means of an initialization scheme based on classical methods. We validate NeuSA on canonical benchmarks for linear and nonlinear wave equations, demonstrating strong performance as compared to other architectures, with faster convergence, improved temporal consistency and superior predictive accuracy. Code and pretrained models are available in https://github.com/arthur-bizzi/neusa.
Multiplayer Federated Learning: Reaching Equilibrium with Less Communication
Venue: Conference NeurIPS 2025
Year: 2025

Traditional Federated Learning (FL) approaches assume collaborative clients with aligned objectives working towards a shared global model. However, in many real-world scenarios, clients act as rational players with individual objectives and strategic behaviors, a concept that existing FL frameworks are not equipped to adequately address. To bridge this gap, we introduce Multiplayer Federated Learning (MpFL), a novel framework that models the clients in the FL environment as players in a game-theoretic context, aiming to reach an equilibrium. In this scenario, each player tries to optimize their own utility function, which may not align with the collective goal. Within MpFL, we propose Per-Player Local Stochastic Gradient Descent (PEARL-SGD), an algorithm in which each player/client performs local updates independently and periodically communicates with other players. We theoretically analyze PEARL-SGD and prove that it reaches a neighborhood of equilibrium with less communication in the stochastic setup compared to its non-local counterpart. Finally, we verify our theoretical findings through numerical experiments.
Better Language Model Inversion by Compactly Representing Next-Token Distributions
Venue: Conference NeurIPS 2025
Year: 2025

Language model inversion seeks to recover hidden prompts using only language model outputs. This capability has implications for security and accountability in language model deployments, such as leaking private information from an API-protected language model's system message. We propose a new method -- prompt inversion from logprob sequences (PILS) -- that recovers hidden prompts by gleaning clues from the model's next-token probabilities over the course of multiple generation steps. Our method is enabled by a key insight: The vector-valued outputs of a language model occupy a low-dimensional subspace. This enables us to losslessly compress the full next-token probability distribution over multiple generation steps using a linear map, allowing more output information to be used for inversion. Our approach yields massive gains over previous state-of-the-art methods for recovering hidden prompts, achieving 2--3.5 times higher exact recovery rates across test sets, in one case increasing the recovery rate from 17% to 60%. Our method also exhibits surprisingly good generalization behavior; for instance, an inverter trained on 16 generations steps gets 5--27 points higher prompt recovery when we increase the number of steps to 32 at test time. Furthermore, we demonstrate strong performance of our method on the more challenging task of recovering hidden system messages. We also analyze the role of verbatim repetition in prompt recovery and propose a new method for cross-family model transfer for logit-based inverters. Our findings show that next-token probabilities are a considerably more vulnerable attack surface for inversion attacks than previously known.
Learning Skill-Attributes for Transferable Assessment in Video
Venue: Conference NeurIPS 2025
Year: 2025

Skill assessment from video entails rating the quality of a person's physical performance and explaining what could be done better. Today's models specialize for an individual sport, and suffer from the high cost and scarcity of expert-level supervision across the long tail of sports. Towards closing that gap, we explore transferable video representations for skill assessment. Our CrossTrainer approach discovers skill-attributes, such as balance, control, and hand positioning -- whose meaning transcends the boundaries of any given sport, then trains a multimodal language model to generate actionable feedback for a novel video, e.g., "lift hands more to generate more power" as well as its proficiency level, e.g., early expert. We validate the new model on multiple datasets for both cross-sport (transfer) and intra-sport (in-domain) settings, where it achieves gains up to 60% relative to the state of the art. By abstracting out the shared behaviors indicative of human skill, the proposed video representation generalizes substantially better than an array of existing techniques, enriching today's multimodal large language models.
Projecting Assumptions: The Duality Between Sparse Autoencoders and Concept Geometry
Venue: Conference NeurIPS 2025
Year: 2025

Sparse Autoencoders (SAEs) are widely used to interpret neural networks by identifying meaningful concepts from their representations. However, do SAEs truly uncover all concepts a model relies on, or are they inherently biased toward certain kinds of concepts? We introduce a unified framework that recasts SAEs as solutions to a bilevel optimization problem, revealing a fundamental challenge: each SAE imposes structural assumptions about how concepts are encoded in model representations, which in turn shapes what it can and cannot detect. This means different SAEs are not interchangeable -- switching architectures can expose entirely new concepts or obscure existing ones. To systematically probe this effect, we evaluate SAEs across a spectrum of settings: from controlled toy models that isolate key variables, to semi-synthetic experiments on real model activations and finally to large-scale, naturalistic datasets. Across this progression, we examine two fundamental properties that real-world concepts often exhibit: heterogeneity in intrinsic dimensionality (some concepts are inherently low-dimensional, others are not) and nonlinear separability. We show that SAEs fail to recover concepts when these properties are ignored, and we design a new SAE that explicitly incorporates both, enabling the discovery of previously hidden concepts and reinforcing our theoretical insights. Our findings challenge the idea of a universal SAE and underscores the need for architecture-specific choices in model interpretability. Overall, we argue an SAE does not just reveal concepts -- it determines what can be seen at all.
Learning to Condition: A Neural Heuristic for Scalable MPE Inference
Venue: Conference NeurIPS 2025
Year: 2025

We introduce learning to condition (L2C), a scalable, data-driven framework for accelerating Most Probable Explanation (MPE) inference in Probabilistic Graphical Models (PGMs), a fundamentally intractable problem. L2C trains a neural network to score variable-value assignments based on their utility for conditioning, given observed evidence. To facilitate supervised learning, we develop a scalable data generation pipeline that extracts training signals from the search traces of existing MPE solvers. The trained network serves as a heuristic that integrates with search algorithms, acting as a conditioning strategy prior to exact inference or as a branching and node selection policy within branch-and-bound solvers. We evaluate L2C on challenging MPE queries involving high-treewidth PGMs. Experiments show that our learned heuristic significantly reduces the search space while maintaining or improving solution quality over state-of-the-art methods.
Differentiable Structure Learning and Causal Discovery for General Binary Data
Venue: Conference NeurIPS 2025
Year: 2025

Existing methods for differentiable structure learning in discrete data typically assume that the data are generated from specific structural equation models. However, these assumptions may not align with the true data-generating process, which limits the general applicability of such methods. Furthermore, current approaches often ignore the complex dependence structure inherent in discrete data and consider only linear effects. We propose a differentiable structure learning framework that is capable of capturing arbitrary dependencies among discrete variables. We show that although general discrete models are unidentifiable from purely observational data, it is possible to characterize the complete set of compatible parameters and structures. Additionally, we establish identifiability up to Markov equivalence under mild assumptions. We formulate the learning problem as a single differentiable optimization task in the most general form, thereby avoiding the unrealistic simplifications adopted by previous methods. Empirical results demonstrate that our approach effectively captures complex relationships in discrete data.
FLOWING: Implicit Neural Flows for Structure-Preserving Morphing
Venue: Conference NeurIPS 2025
Year: 2025

Morphing is a long-standing problem in vision and computer graphics, requiring a time-dependent warping for feature alignment and a blending for smooth interpolation. Recently, multilayer perceptrons (MLPs) have been explored as implicit neural representations (INRs) for modeling such deformations, due to their meshlessness and differentiability; however, extracting coherent and accurate morphings from standard MLPs typically relies on costly regularizations, which often lead to unstable training and prevent effective feature alignment. To overcome these limitations, we propose FLOWING (FLOW morphING), a framework that recasts warping as the construction of a differential vector flow, naturally ensuring continuity, invertibility, and temporal coherence by encoding structural flow properties directly into the network architectures. This flow-centric approach yields principled and stable transformations, enabling accurate and structure-preserving morphing of both 2D images and 3D shapes. Extensive experiments across a range of applications - including face and image morphing, as well as Gaussian Splatting morphing - show that FLOWING achieves state-of-the-art morphing quality with faster convergence. Code and pretrained models are available at http://schardong.github.io/flowing.
Turbocharging Gaussian Process Inference with Approximate Sketch-and-Project
Venue: Conference NeurIPS 2025
Year: 2025

Gaussian processes (GPs) play an essential role in biostatistics, scientific machine learning, and Bayesian optimization for their ability to provide probabilistic predictions and model uncertainty. However, GP inference struggles to scale to large datasets (which are common in modern applications), since it requires the solution of a linear system whose size scales quadratically with the number of samples in the dataset. We propose an approximate, distributed, accelerated sketch-and-project algorithm ($\texttt{ADASAP}$) for solving these linear systems, which improves scalability. We use the theory of determinantal point processes to show that the posterior mean induced by sketch-and-project rapidly converges to the true posterior mean. In particular, this yields the first efficient, condition number-free algorithm for estimating the posterior mean along the top spectral basis functions, showing that our approach is principled for GP inference. $\texttt{ADASAP}$ outperforms state-of-the-art solvers based on conjugate gradient and coordinate descent across several benchmark datasets and a large-scale Bayesian optimization task. Moreover, $\texttt{ADASAP}$ scales to a dataset with $> 3 \cdot 10^8$ samples, a feat which has not been accomplished in the literature.
Adaptive Divergence Regularized Policy Optimization for Fine-tuning Generative Models
Venue: Conference NeurIPS 2025
Year: 2025

Balancing exploration and exploitation during reinforcement learning fine-tuning of generative models presents a critical challenge, as existing approaches rely on fixed divergence regularization that creates an inherent dilemma: strong regularization preserves model capabilities but limits reward optimization, while weak regularization enables greater alignment but risks instability or reward hacking. We introduce Adaptive Divergence Regularized Policy Optimization (ADRPO), which automatically adjusts regularization strength based on advantage estimates-reducing regularization for high-value samples while applying stronger regularization to poor samples, enabling policies to navigate between exploration and aggressive exploitation according to data quality. Our implementation with Wasserstein-2 regularization for flow matching generative models achieves remarkable results on text-to-image generation, achieving better semantic alignment and diversity than offline methods like DPO and online methods with fixed regularization like ORW-CFM-W2. ADRPO enables a 2B parameter SD3 model to surpass much larger models with 4.8B and 12B parameters in attribute binding, semantic consistency, artistic style transfer, and compositional control while maintaining generation diversity. ADRPO generalizes to KL-regularized fine-tuning of both text-only LLMs and multi-modal reasoning models, enhancing existing online RL methods like GRPO. In LLM fine-tuning, ADRPO demonstrates an emergent ability to escape local optima through active exploration, while in multi-modal audio reasoning, it outperforms GRPO through superior step-by-step reasoning, enabling a 7B model to outperform substantially larger commercial models including Gemini 2.5 Pro and GPT-4o Audio, offering an effective plug-and-play solution to the exploration-exploitation challenge across diverse generative architectures and modalities.
GeoClip: Geometry-Aware Clipping for Differentially Private SGD
Venue: Conference NeurIPS 2025
Year: 2025

Differentially private stochastic gradient descent (DP-SGD) is the most widely used method for training machine learning models with provable privacy guarantees. A key challenge in DP-SGD is setting the per-sample gradient clipping threshold, which significantly affects the trade-off between privacy and utility. While recent adaptive methods improve performance by adjusting this threshold during training, they operate in the standard coordinate system and fail to account for correlations across the coordinates of the gradient. We propose GeoClip, a geometry-aware framework that clips and perturbs gradients in a transformed basis aligned with the geometry of the gradient distribution. GeoClip adaptively estimates this transformation using only previously released noisy gradients, incurring no additional privacy cost. We provide convergence guarantees for GeoClip and derive a closed-form solution for the optimal transformation that minimizes the amount of noise added while keeping the probability of gradient clipping under control. Experiments on both tabular and image datasets demonstrate that GeoClip consistently outperforms existing adaptive clipping methods under the same privacy budget.
Thumb on the Scale: Optimal Loss Weighting in Last Layer Retraining
Venue: Conference NeurIPS 2025
Year: 2025

While machine learning models become more capable in discriminative tasks at scale, their ability to overcome biases introduced by training data has come under increasing scrutiny. Previous results suggest that there are two extremes of parameterization with very different behaviors: the population (underparameterized) setting where loss weighting is optimal and the separable overparameterized setting where loss weighting is ineffective at ensuring equal performance across classes. This work explores the regime of last layer retraining (LLR) in which the unseen limited (retraining) data is frequently inseparable and the model proportionately sized, falling between the two aforementioned extremes. We show, in theory and practice, that loss weighting is still effective in this regime, but that these weights \emph{must} take into account the relative overparameterization of the model.
Understanding while Exploring: Semantics-driven Active Mapping
Venue: Conference NeurIPS 2025
Year: 2025

Effective robotic autonomy in unknown environments demands proactive exploration and precise understanding of both geometry and semantics. In this paper, we propose ActiveSGM, an active semantic mapping framework designed to predict the informativeness of potential observations before execution. Built upon a 3D Gaussian Splatting (3DGS) mapping backbone, our approach employs semantic and geometric uncertainty quantification, coupled with a sparse semantic representation, to guide exploration. By enabling robots to strategically select the most beneficial viewpoints, ActiveSGM efficiently enhances mapping completeness, accuracy, and robustness to noisy semantic data, ultimately supporting more adaptive scene exploration. Our experiments on the Replica and Matterport3D datasets highlight the effectiveness of ActiveSGM in active semantic mapping tasks.