OpenRaiser/Intern-Atlas huggingface dataset:
Score-informed Neural Operator for Enhancing Ordering-based Causal Discovery
Venue: Conference NeurIPS 2025
Year: 2025

Ordering-based approaches to causal discovery identify topological orders of causal graphs, providing scalable alternatives to combinatorial search methods. Under the Additive Noise Model (ANM) assumption, recent causal ordering methods based on score matching require an accurate estimation of the Hessian diagonal of the log-densities. In this paper, we aim to improve the approximation of the Hessian diagonal of the log-densities, thereby enhancing the performance of ordering-based causal discovery algorithms. Existing approaches that rely on Stein gradient estimators are computationally expensive and memory-intensive, while diffusion-model-based methods remain unstable due to the second-order derivatives of score models. To alleviate these problems, we propose Score-informed Neural Operator (SciNO), a probabilistic generative model in smooth function spaces designed to stably approximate the Hessian diagonal and to preserve structural information during the score modeling. Empirical results show that SciNO reduces order divergence by 42.7% on synthetic graphs and by 31.5% on real-world datasets on average compared to DiffAN, while maintaining memory efficiency and scalability. Furthermore, we propose a probabilistic control algorithm for causal reasoning with autoregressive models that integrates SciNO's probability estimates with autoregressive model priors, enabling reliable data-driven causal ordering informed by semantic information. Consequently, the proposed method enhances causal reasoning abilities of LLMs without additional fine-tuning or prompt engineering.
Global Prompt Refinement with Non-Interfering Attention Masking for One-Shot Federated Learning
Venue: Conference NeurIPS 2025
Year: 2025

Federated Prompt Learning (FPL) enables communication-efficient adaptation by tuning lightweight prompts on top of frozen pre-trained models. Existing FPL methods typically rely on global information, which is only available after the second training round, to facilitate collaboration among client models. Therefore, they are inherently dependent on multi-round communication to fully exhibit their strengths. Moreover, existing one-shot federated learning methods typically focus on fitting seen tasks, but lack cross-task generalization. To bridge this gap, we propose the Global Prompt Refinement with Non-Interfering Attention Masking (GPR-NIAM) method for one-shot FPL. The core idea is to design a masking mechanism that restricts excessive interaction between the original text embeddings and the learnable prompt embeddings. GPR-NIAM achieves this through the collaboration of two key modules. Firstly, the attention isolation module suppresses attention from the learnable prompt tokens to the original text tokens, and reweights the reverse attention which preserves generalization across tasks. Secondly, the cross-silo collaborative refinement module integrates decentralized visual knowledge into a unified base and calibrates the global prompt through multi-source cross-modal knowledge alignment, further mitigating the inconsistency caused by data heterogeneity. Extensive experiments conducted on ten benchmark datasets under two tasks show that GPR-NIAM outperforms eight state-of-the-art methods in both class-level and domain-level generalization.
Predictive Coding Enhances Meta-RL To Achieve Interpretable Bayes-Optimal Belief Representation Under Partial Observability
Venue: Conference NeurIPS 2025
Year: 2025

Learning a compact representation of history is critical for planning and generalization in partially observable environments. While meta-reinforcement learning (RL) agents can attain near Bayes-optimal policies, they often fail to learn the compact, interpretable Bayes-optimal belief states. This representational inefficiency potentially limits the agent's adaptability and generalization capacity. Inspired by predictive coding in neuroscience--which suggests that the brain predicts sensory inputs as a neural implementation of Bayesian inference--and by auxiliary predictive objectives in deep RL, we investigate whether integrating self-supervised predictive coding modules into meta-RL can facilitate learning of Bayes-optimal representations. Through state machine simulation, we show that meta-RL with predictive modules consistently generates more interpretable representations that better approximate Bayes-optimal belief states compared to conventional meta-RL across a wide variety of tasks, even when both achieve optimal policies. In challenging tasks requiring active information seeking, only meta-RL with predictive modules successfully learns optimal representations and policies, whereas conventional meta-RL struggles with inadequate representation learning. Finally, we demonstrate that better representation learning leads to improved generalization. Our results strongly suggest the role of predictive learning as a guiding principle for effective representation learning in agents navigating partial observability.
Optimizing Anytime Reasoning via Budget Relative Policy Optimization
Venue: Conference NeurIPS 2025
Year: 2025

Scaling test-time compute is crucial for enhancing the reasoning capabilities of large language models (LLMs). Existing approaches typically employ reinforcement learning (RL) to maximize a verifiable reward obtained at the end of reasoning traces. However, such methods optimize only the final performance under a large and fixed token budget, which hinders efficiency in both training and deployment. In this work, we present a novel framework, AnytimeReasoner, to optimize anytime reasoning performance, which aims to improve token efficiency and the flexibility of reasoning under varying token budget constraints. To achieve this, we truncate the complete thinking process to fit within sampled token budgets from a prior distribution, compelling the model to summarize the optimal answer for each truncated thinking for verification. This introduces verifiable dense rewards into the reasoning process, facilitating more effective credit assignment in RL optimization. We then optimize the thinking and summary policies in a decoupled manner to maximize the cumulative reward. Additionally, we introduce a novel variance reduction technique, Budget Relative Policy Optimization (BRPO), to enhance the robustness and efficiency of the learning process when reinforcing the thinking policy. Empirical results in mathematical reasoning tasks demonstrate that our method consistently outperforms GRPO across all thinking budgets under various prior distributions, enhancing both training and token efficiency.
TRAP: Targeted Redirecting of Agentic Preferences
Venue: Conference NeurIPS 2025
Year: 2025

Autonomous agentic AI systems powered by vision-language models (VLMs) are rapidly advancing toward real-world deployment, yet their cross-modal reasoning capabilities introduce new attack surfaces for adversarial manipulation that exploit semantic reasoning across modalities. Existing adversarial attacks typically rely on visible pixel perturbations or require privileged model or environment access, making them impractical for stealthy, real-world exploitation. We introduce TRAP, a novel generative adversarial framework that manipulates the agent's decision-making using diffusion-based semantic injections into the vision-language embedding space. Our method combines negative prompt-based degradation with positive semantic optimization, guided by a Siamese semantic network and layout-aware spatial masking. Without requiring access to model internals, TRAP produces visually natural images yet induces consistent selection biases in agentic AI systems. We evaluate TRAP on the Microsoft Common Objects in Context (COCO) dataset, building multi-candidate decision scenarios. Across these scenarios, TRAP consistently induces decision-level preference redirection on leading models, including LLaVA-34B, Gemma3, GPT-4o, and Mistral-3.2, significantly outperforming existing baselines such as SPSA, Bandit, and standard diffusion approaches. These findings expose a critical, generalized vulnerability: autonomous agents can be consistently misled through visually subtle, semantically-guided cross-modal manipulations. Overall, our results show the need for defense strategies beyond pixel-level robustness to address semantic vulnerabilities in cross-modal decision-making. The code for TRAP is accessible on GitHub at https://github.com/uiuc-focal-lab/TRAP.
Preference Learning with Response Time: Robust Losses and Guarantees
Venue: Conference NeurIPS 2025
Year: 2025

This paper investigates the integration of response time data into human preference learning frameworks for more effective reward model elicitation. While binary preference data has become fundamental in fine-tuning foundation models, generative AI systems, and other large-scale models, the valuable temporal information inherent in user decision-making remains largely unexploited. We propose novel methodologies to incorporate response time information alongside binary choice data, leveraging the Evidence Accumulation Drift Diffusion (EZ) model, under which response time is informative of the preference strength. We develop Neyman-orthogonal loss functions that achieve oracle convergence rates for reward model learning, matching the theoretical optimal rates that would be attained if the expected response times for each query were known a priori. Our theoretical analysis demonstrates that for linear reward functions, conventional preference learning suffers from error rates that scale exponentially with reward magnitude. In contrast, our response time-augmented approach reduces this to polynomial scaling, representing a significant improvement in sample efficiency. We extend these guarantees to non-parametric reward function spaces, establishing convergence properties for more complex, realistic reward models. Our extensive experiments validate our theoretical findings in the context of preference learning over images.
How to build a consistency model: Learning flow maps via self-distillation
Venue: Conference NeurIPS 2025
Year: 2025

Flow-based generative models achieve state-of-the-art sample quality, but require the expensive solution of a differential equation at inference time. Flow map models, commonly known as consistency models, encompass many recent efforts to improve inference-time efficiency by learning the solution operator of this differential equation. Yet despite their promise, these models lack a unified description that clearly explains how to learn them efficiently in practice. Here, building on the methodology proposed in Boffi et. al. (2024), we present a systematic algorithmic framework for directly learning the flow map associated with a flow or diffusion model. By exploiting a relationship between the velocity field underlying a continuous-time flow and the instantaneous rate of change of the flow map, we show how to convert any distillation scheme into a direct training algorithm via self-distillation, eliminating the need for pre-trained teachers. We introduce three algorithmic families based on different mathematical characterizations of the flow map: Eulerian, Lagrangian, and Progressive methods, which we show encompass and extend all known distillation and direct training schemes for consistency models. We find that the novel class of Lagrangian methods, which avoid both spatial derivatives and bootstrapping from small steps by design, achieve significantly more stable training and higher performance than more standard Eulerian and Progressive schemes. Our methodology unifies existing training schemes under a single common framework and reveals new design principles for accelerated generative modeling. Associated code is available at https://github.com/nmboffi/flow-maps.
Online Multi-Class Selection with Group Fairness Guarantee
Venue: Conference NeurIPS 2025
Year: 2025

We study the online multi-class selection problem with group fairness guarantees, where limited resources must be allocated to sequentially arriving agents. Our work addresses two key limitations in the existing literature. First, we introduce a novel lossless rounding scheme that ensures the integral algorithm achieves the same expected performance as any fractional solution. Second, we explicitly address the challenges introduced by agents who belong to multiple classes. To this end, we develop a randomized algorithm based on a relax-and-round framework. The algorithm first computes a fractional solution using a resource reservation approach -- referred to as the set-aside mechanism -- to enforce fairness across classes. The subsequent rounding step preserves these fairness guarantees without degrading performance. Additionally, we propose a learning-augmented variant that incorporates untrusted machine-learned predictions to better balance fairness and efficiency in practical settings.
Architectural and Inferential Inductive Biases for Exchangeable Sequence Modeling
Venue: Conference NeurIPS 2025
Year: 2025

Autoregressive models have emerged as a powerful framework for modeling exchangeable sequences - i.i.d. observations when conditioned on some latent factor - enabling direct modeling of uncertainty from missing data (rather than a latent). Motivated by the critical role posterior inference plays as a subroutine in decision-making (e.g., active learning, bandits), we study the inferential and architectural inductive biases that are most effective for exchangeable sequence modeling. For the inference stage, we highlight a fundamental limitation of the prevalent single-step generation approach: inability to distinguish between epistemic and aleatoric uncertainty. Instead, a long line of works in Bayesian statistics advocates for multi-step autoregressive generation; we demonstrate this "correct approach" enables superior uncertainty quantification that translates into better performance on downstream decision-making tasks. This naturally leads to the next question: which architectures are best suited for multi-step inference? We identify a subtle yet important gap between recently proposed Transformer architectures for exchangeable sequences (Muller et al., 2022; Nguyen & Grover, 2022; Ye & Namkoong, 2024), and prove that they in fact cannot guarantee exchangeability despite introducing significant computational overhead. We illustrate our findings using controlled synthetic settings, demonstrating how custom architectures can significantly underperform standard causal masks, underscoring the need for new architectural innovations.
Hierarchical Retrieval: The Geometry and a Pretrain-Finetune Recipe
Venue: Conference NeurIPS 2025
Year: 2025

Dual encoder (DE) models, where a pair of matching query and document are embedded into similar vector representations, are widely used in information retrieval due to their simplicity and scalability. However, the Euclidean geometry of the embedding space limits the expressive power of DEs, which may compromise their quality. This paper investigates such limitations in the context of hierarchical retrieval (HR), where the document set has a hierarchical structure and the matching documents for a query are all of its ancestors. We first prove that DEs are feasible for HR as long as the embedding dimension is linear in the depth of the hierarchy and logarithmic in the number of documents. Then we study the problem of learning such embeddings in a standard retrieval setup where DEs are trained on samples of matching query and document pairs. Our experiments reveal a lost-in-the-long-distance phenomenon, where retrieval accuracy degrades for documents further away in the hierarchy. To address this, we introduce a pretrain-finetune recipe that significantly improves long-distance retrieval without sacrificing performance on closer documents. We experiment on a realistic hierarchy from WordNet for retrieving documents at various levels of abstraction, and show that pretrain-finetune boosts the recall on long-distance pairs from 19% to 76%. Finally, we demonstrate that our method improves retrieval of relevant products on a shopping queries dataset.
Efficiently Verifiable Proofs of Data Attribution
Venue: Conference NeurIPS 2025
Year: 2025

Data attribution methods aim to answer useful counterfactual questions like "what would a ML model's prediction be if it were trained on a different dataset?" However, estimation of data attribution models through techniques like empirical influence or "datamodeling" remains very computationally expensive. This causes a critical trust issue: if only a few computationally rich parties can obtain data attributions, how can resource-constrained parties trust that the provided attributions are indeed "good," especially when they are used for important downstream applications (e.g., data pricing)? In this paper, we address this trust issue by proposing an interactive verification paradigm for data attribution. An untrusted and computationally powerful Prover learns data attributions, and then engages in an interactive proof with a resource-constrained Verifier. Our main result is a protocol that provides formal completeness, soundness, and efficiency guarantees in the sense of Probably-Approximately-Correct (PAC) verification. Specifically, if both Prover and Verifier follow the protocol, the Verifier accepts data attributions that are ε-close to the optimal data attributions (in terms of the Mean Squared Error) with probability 1-δ. Conversely, if the Prover arbitrarily deviates from the protocol, even with infinite compute, then this is detected (or it still yields data attributions to the Verifier) except with probability δ. Importantly, our protocol ensures the Verifier's workload, measured by the number of independent model retrainings it must perform, scales only as O(1/ε); i.e., independently of the dataset size. At a technical level, our results apply to efficiently verifying any linear function over the boolean hypercube computed by the Prover, making them broadly applicable to various attribution tasks.
Knowledge Distillation of Uncertainty using Deep Latent Factor Model
Venue: Conference NeurIPS 2025
Year: 2025

Deep ensembles deliver state-of-the-art, reliable uncertainty quantification, but their heavy computational and memory requirements hinder their practical deployments to real applications such as on-device AI. Knowledge distillation compresses an ensemble into small student models, but existing techniques struggle to preserve uncertainty partly because reducing the size of DNNs typically results in variation reduction. To resolve this limitation, we introduce a new method of distribution distillation (i.e. compressing a teacher ensemble into a student distribution instead of a student ensemble) called Gaussian distillation, which estimates the distribution of a teacher ensemble through a special Gaussian process called the deep latent factor model (DLF) by treating each member of the teacher ensemble as a realization of a certain stochastic process. The mean and covariance functions in the DLF model are estimated stably by using the expectation-maximization (EM) algorithm. By using multiple benchmark datasets, we demonstrate that the proposed Gaussian distillation outperforms existing baselines. In addition, we illustrate that Gaussian distillation works well for fine-tuning of language models and distribution shift problems.
Learning from positive and unlabeled examples -Finite size sample bounds
Venue: Conference NeurIPS 2025
Year: 2025

PU (Positive Unlabeled) learning is a variant of supervised classification learning in which the only labels revealed to the learner are of positively labeled instances. PU learning arises in many real-world applications. Most existing work relies on the simplifying assumptions that the positively labeled training data is drawn from the restriction of the data generating distribution to positively labeled instances and/or that the proportion of positively labeled points (a.k.a. the class prior) is known apriori to the learner. This paper provides a theoretical analysis of the statistical complexity of PU learning under a wider range of setups. Unlike most prior work, our study does not assume that the class prior is known to the learner. We prove upper and lower bounds on the required sample sizes (of both the positively labeled and the unlabeled samples).
Improved Balanced Classification with Theoretically Grounded Loss Functions
Venue: Conference NeurIPS 2025
Year: 2025

The balanced loss is a widely adopted objective for multi-class classification under class imbalance. By assigning equal importance to all classes, regardless of their frequency, it promotes fairness and ensures that minority classes are not overlooked. However, directly minimizing the balanced classification loss is typically intractable, which makes the design of effective surrogate losses a central question. This paper introduces and studies two advanced surrogate loss families: Generalized Logit-Adjusted (GLA) loss functions and Generalized Class-Aware weighted (GCA) losses. GLA losses generalize Logit-Adjusted losses, which shift logits based on class priors, to the broader general cross-entropy loss family. GCA loss functions extend the standard class-weighted losses, which scale losses inversely by class frequency, by incorporating class-dependent confidence margins and extending them to the general cross-entropy family. We present a comprehensive theoretical analysis of consistency for both loss families. We show that GLA losses are Bayes-consistent, but only $H$-consistent for complete (i.e., unbounded) hypothesis sets. Moreover, their $H$-consistency bounds depend inversely on the minimum class probability, scaling at least as $1/\mathsf p_{\min}$. In contrast, GCA losses are $H$-consistent for any hypothesis set that is bounded or complete, with $H$-consistency bounds that scale more favorably as $1/\sqrt{\mathsf p_{\min}}$, offering significantly stronger theoretical guarantees in imbalanced settings. We report the results of experiments demonstrating that, empirically, both the GCA losses with calibrated class-dependent confidence margins and GLA losses can greatly outperform straightforward class-weighted losses as well as the LA losses. GLA generally performs slightly better in common benchmarks, whereas GCA exhibits a slight edge in highly imbalanced settings.
3D-Prover: Diversity Driven Theorem Proving With Determinantal Point Processes
Venue: Conference NeurIPS 2025
Year: 2025

A key challenge in automated formal reasoning is the intractable search space, which grows exponentially with the depth of the proof. This branching is caused by the large number of candidate proof tactics which can be applied to a given goal. Nonetheless, many of these tactics are semantically similar or lead to an execution error, wasting valuable resources in both cases. We address the problem of effectively pruning this search, using only synthetic data generated from previous proof attempts. We first demonstrate that it is possible to generate semantically aware tactic representations which capture the effect on the proving environment, likelihood of success, and execution time. We then propose a novel filtering mechanism which leverages these representations to select semantically diverse and high quality tactics, using Determinantal Point Processes. Our approach, 3D- Prover, is designed to be general, and to augment any underlying tactic generator. We demonstrate the effectiveness of 3D-Prover on the miniF2F and LeanDojo benchmarks by augmenting popular open source proving LLMs. We show that our approach leads to an increase in the overall proof rate, as well as a significant improvement in the tactic success rate, execution time and diversity. We make our code available at https://github.com/sean-lamont/3D-Prover.