OpenRaiser/Intern-Atlas huggingface dataset:
NeSyPr: Neurosymbolic Proceduralization For Efficient Embodied Reasoning
Venue: Conference NeurIPS 2025
Year: 2025

We address the challenge of adopting language models (LMs) for embodied tasks in dynamic environments, where online access to large-scale inference engines or symbolic planners is constrained due to latency, connectivity, and resource limitations. To this end, we present NeSyPr, a novel embodied reasoning framework that compiles knowledge via neurosymbolic proceduralization, thereby equipping LM-based agents with structured, adaptive, and timely reasoning capabilities. In NeSyPr, task-specific plans are first explicitly generated by a symbolic tool leveraging its declarative knowledge. These plans are then transformed into composable procedural representations that encode the plans' implicit production rules, enabling the resulting composed procedures to be seamlessly integrated into the LM's inference process. This neurosymbolic proceduralization abstracts and generalizes multi-step symbolic structured path-finding and reasoning into single-step LM inference, akin to human knowledge compilation. It supports efficient test-time inference without relying on external symbolic guidance, making it well suited for deployment in latency-sensitive and resource-constrained physical systems. We evaluate NeSyPr on the embodied benchmarks PDDLGym, VirtualHome, and ALFWorld, demonstrating its efficient reasoning capabilities over large-scale reasoning models and a symbolic planner, while using more compact LMs.
RepoMaster: Autonomous Exploration and Understanding of GitHub Repositories for  Complex Task Solving
Venue: Conference NeurIPS 2025
Year: 2025

The ultimate goal of code agents is to solve complex tasks autonomously. Although large language models (LLMs) have made substantial progress in code generation, real-world tasks typically demand full-fledged code repositories rather than simple scripts. Building such repositories from scratch remains a major challenge. Fortunately, GitHub hosts a vast, evolving collection of open-source repositories, which developers frequently reuse as modular components for complex tasks. Yet, existing frameworks like OpenHands and SWE-Agent still struggle to effectively leverage these valuable resources. Relying solely on README files provides insufficient guidance, and deeper exploration reveals two core obstacles: overwhelming information and tangled dependencies of repositories, both constrained by the limited context windows of current LLMs. To tackle these issues, we propose RepoMaster, an autonomous agent framework designed to explore and reuse GitHub repositories for solving complex tasks. For efficient understanding, RepoMaster constructs function-call graphs, module-dependency graphs, and hierarchical code trees to identify essential components, providing only identified core elements to the LLMs rather than the entire repository. During autonomous execution, it progressively explores related components using our exploration tools and prunes information to optimize context usage. Evaluated on the adjusted MLE-bench, RepoMaster achieves a 110% relative boost in valid submissions over the strongest baseline OpenHands. On our newly released GitTaskBench, RepoMaster lifts the task-pass rate from 40.7% to 62.9% while reducing token usage by 95%. Our code and demonstration materials are publicly available at https://github.com/QuantaAlpha/RepoMaster.
Multiresolution Analysis and Statistical Thresholding on Dynamic Networks
Venue: Conference NeurIPS 2025
Year: 2025

Detecting structural change in dynamic network data has wide-ranging applications. Existing approaches typically divide the data into time bins, extract network features within each bin, and then compare these features over time. This introduces an inherent tradeoff between temporal resolution and the statistical stability of the extracted features. Despite this tradeoff, reminiscent of time-frequency tradeoffs in signal processing, most methods rely on a fixed temporal resolution. Choosing an appropriate resolution parameter is typically difficult and can be especially problematic in domains like cybersecurity, where anomalous behavior may emerge at multiple time scales. We address this challenge by proposing ANIE (Adaptive Network Intensity Estimation), a multi-resolution framework designed to automatically identify the time scales at which network structure evolves, enabling the joint detection of both rapid and gradual changes. Modeling interactions as Poisson processes, our method proceeds in two steps: (1) estimating a low-dimensional subspace of node behavior, and (2) deriving a set of novel empirical affinity coefficients that quantify change in interaction intensity between latent factors and support statistical testing for structural change across time scales. We provide theoretical guarantees for subspace estimation and the asymptotic behavior of the affinity coefficients, enabling model-based change detection. Experiments on synthetic networks show that ANIE adapts to the appropriate time resolution and is able to capture sharp structural changes while remaining robust to noise. Furthermore, applications to real-world data showcase the practical benefits of ANIE's multiresolution approach to detecting structural change over fixed resolution methods.
One-Step Diffusion for Detail-Rich and Temporally Consistent Video Super-Resolution
Venue: Conference NeurIPS 2025
Year: 2025

It is a challenging problem to reproduce rich spatial details while maintaining temporal consistency in real-world video super-resolution (Real-VSR), especially when we leverage pre-trained generative models such as stable diffusion (SD) for realistic details synthesis. Existing SD-based Real-VSR methods often compromise spatial details for temporal coherence, resulting in suboptimal visual quality. We argue that the key lies in how to effectively extract the degradation-robust temporal consistency priors from the low-quality (LQ) input video and enhance the video details while maintaining the extracted consistency priors. To achieve this, we propose a Dual LoRA Learning (DLoRAL) paradigm to train an effective SD-based one-step diffusion model, achieving realistic frame details and temporal consistency simultaneously. Specifically, we introduce a Cross-Frame Retrieval (CFR) module to aggregate complementary information across frames, and train a Consistency-LoRA (C-LoRA) to learn robust temporal representations from degraded inputs. After consistency learning, we fix the CFR and C-LoRA modules and train a Detail-LoRA (D-LoRA) to enhance spatial details while aligning with the temporal space defined by C-LoRA to keep temporal coherence. The two phases alternate iteratively for optimization, collaboratively delivering consistent and detail-rich outputs. During inference, the two LoRA branches are merged into the SD model, allowing efficient and high-quality video restoration in a single diffusion step. Experiments show that DLoRAL achieves strong performance in both accuracy and speed. Code and models are available at https://github.com/yjsunnn/DLoRAL.
Convex Approximation of Two-Layer ReLU Networks for Hidden State Differential Privacy
Venue: Conference NeurIPS 2025
Year: 2025

The hidden state threat model of differential privacy (DP) assumes that the adversary has access only to the final trained machine learning (ML) model, without seeing intermediate states during training. However, the current privacy analyses under this model are restricted to convex optimization problems, reducing their applicability to multi-layer neural networks, which are essential in modern deep learning applications. Notably, the most successful applications of the hidden state privacy analyses in classification tasks have only been for logistic regression models. We demonstrate that it is possible to privately train convex problems with privacy-utility trade-offs comparable to those of 2-layer ReLU networks trained with DP stochastic gradient descent (DP-SGD). This is achieved through a stochastic approximation of a dual formulation of the ReLU minimization problem, resulting in a strongly convex problem. This enables the use of existing hidden state privacy analyses and provides accurate privacy bounds also for the noisy cyclic mini-batch gradient descent (NoisyCGD) method with fixed disjoint mini-batches. Empirical results on benchmark classification tasks demonstrate that NoisyCGD can achieve privacy-utility trade-offs on par with DP-SGD applied to 2-layer ReLU networks.
A Partition Cover Approach to Tokenization
Venue: Conference NeurIPS 2025
Year: 2025

Tokenization is the process of encoding strings into tokens of a fixed vocabulary size, and is widely utilized in Natural Language Processing applications. The leading tokenization algorithm today is Byte-Pair Encoding (BPE), which formulates the tokenization problem as a compression problem and tackles it by performing sequences of merges. In this work, we formulate tokenization as an optimization objective, show that it is NP-hard via a simple reduction from vertex cover, and propose a polynomial-time greedy algorithm GreedTok. Our formulation naturally relaxes to the well-studied weighted maximum coverage problem which has a simple $(1 - 1/e)$-approximation algorithm GreedWMC. Through empirical evaluations on real-world corpora, we show that GreedTok outperforms BPE and Unigram on compression and achieves a covering score comparable to GreedWMC. Finally, our extensive pre-training for two transformer-based language models with 1 billion parameters, comparing the choices of BPE and GreedTok as the tokenizer, shows that GreedTok achieves a lower bit per byte even when we control for either the total dataset proportion or total training tokens.
Towards Thinking-Optimal Scaling of Test-Time Compute for LLM Reasoning
Venue: Conference NeurIPS 2025
Year: 2025

Recent studies have shown that making a model spend more time thinking through longer Chain of Thoughts (CoTs) enables it to gain significant improvements in complex reasoning tasks. While current researches continue to explore the benefits of increasing test-time compute by extending the CoT lengths of Large Language Models (LLMs), we are concerned about a potential issue hidden behind the current pursuit of test-time scaling: Would excessively scaling the CoT length actually bring adverse effects to a model's reasoning performance? Our explorations on mathematical reasoning tasks reveal an unexpected finding that scaling with longer CoTs can indeed impair the reasoning performance of LLMs in certain domains. Moreover, we discover that there exists an optimal scaled length distribution that differs across different domains. Based on these insights, we propose a Thinking-Optimal Scaling strategy. Our method first uses a small set of seed data with varying response length distributions to teach the model to adopt different reasoning efforts for deep thinking. Then, the model selects its shortest correct response under different reasoning efforts on additional problems for self-improvement. Our self-improved models built upon Qwen2.5-32B-Instruct outperform other distillation-based 32B o1-like models across various math benchmarks, and achieve performance on par with the teacher model QwQ-32B-Preview that produces the seed data.
Rethinking Fine-Tuning when Scaling Test-Time Compute: Limiting Confidence Improves Mathematical Reasoning
Venue: Conference NeurIPS 2025
Year: 2025

Recent progress in large language models (LLMs) highlights the power of scaling test-time compute to achieve strong performance on complex tasks, such as mathematical reasoning and code generation. This raises a critical question: how should model training be modified to optimize performance under a subsequent test-time compute strategy and budget? To explore this, we focus on pass@N, a simple test-time strategy that searches for a correct answer in $N$ independent samples. We show, surprisingly, that training with cross-entropy (CE) loss can be ${\it misaligned}$ with pass@N in that pass@N accuracy ${\it decreases}$ with longer training. We explain the origins of this misalignment in terms of model overconfidence induced by CE, and experimentally verify our prediction of overconfidence as an impediment to scaling test-time compute via pass@N. Furthermore we suggest a principled, modified training loss that is better aligned to pass@N by limiting model confidence and rescuing pass@N test performance. Our algorithm demonstrates improved mathematical reasoning on MATH and MiniF2F benchmarks under several scenarios: (1) providing answers to math questions; and (2) proving theorems by searching over proof trees of varying shapes. Overall our work underscores the importance of co-designing two traditionally separate phases of LLM development: training-time protocols and test-time search and reasoning strategies.
Degrees of Freedom for Linear Attention: Distilling Softmax Attention with Optimal Feature Efficiency
Venue: Conference NeurIPS 2025
Year: 2025

Linear attention has attracted interest as a computationally efficient approximation to softmax attention, especially for long sequences. Recent studies have explored distilling softmax attention in pre-trained Transformers into linear attention. However, a critical challenge remains: how to choose the feature dimension that governs the approximation quality. Existing methods fix this dimension uniformly across all attention layers, overlooking the diverse roles and complexities of them. In this paper, we propose a principled method to automatically determine the feature dimension in linear attention using the concept of statistical degrees of freedom, which represent the effective dimensionality of the inputs. We provide a theoretical bound on the approximation error and show that the dimension chosen by our method achieves smaller error under a fixed computational budget. Furthermore, we introduce an efficient layerwise training strategy to learn nonlinear features tailored to each layer. Experiments on multiple pre-trained transformers demonstrate that our method improves the performance of distilled models compared to baselines without increasing the inference cost. Our findings also provide insight into how the complexity of the attention mechanism evolves across layers.
ChunkKV: Semantic-Preserving KV Cache Compression for Efficient Long-Context LLM Inference
Venue: Conference NeurIPS 2025
Year: 2025

Large Language Models (LLMs) require significant GPU memory when processing long texts, with the key value (KV) cache consuming up to 70\% of total memory during inference. Although existing compression methods reduce memory by evaluating the importance of individual tokens, they overlook critical semantic relationships between tokens, resulting in fragmented context and degraded performance. We introduce ChunkKV, which fundamentally reimagines KV cache compression by treating semantic chunks - rather than isolated tokens - as basic compression units. This approach preserves complete linguistic structures and contextual integrity, ensuring that essential meaning is retained even under aggressive compression. Our innovation includes a novel layer-wise index reuse technique that exploits the higher cross-layer similarity of preserved indices in ChunkKV, reducing computational overhead and improving throughput by 26.5\%. Comprehensive evaluations on challenging benchmarks: LongBench, Needle-In-A-HayStack, GSM8K, and JailbreakV demonstrate that ChunkKV outperforms state-of-the-art methods by up to 8.7\% in precision while maintaining the same compression ratio. These results confirm that semantic-aware compression significantly enhances both efficiency and performance for long-context LLM inference, providing a simple yet effective solution to the memory bottleneck problem. The code is available at \href{https://github.com/NVIDIA/kvpress}{link}.
DC4GS: Directional Consistency-Driven Adaptive Density Control for 3D Gaussian Splatting
Venue: Conference NeurIPS 2025
Year: 2025

We present a Directional Consistency (DC)-driven Adaptive Density Control (ADC) for 3D Gaussian Splatting (DC4GS). Whereas the conventional ADC bases its primitive splitting on the magnitudes of positional gradients, we further incorporate the DC of the gradients into ADC, and realize it through the angular coherence of the gradients. Our DC better captures local structural complexities in ADC, avoiding redundant splitting. When splitting is required, we again utilize the DC to define optimal split positions so that sub-primitives best align with the local structures than the conventional random placement. As a consequence, our DC4GS greatly reduces the number of primitives (up to 30% in our experiments) than the existing ADC, and also enhances reconstruction fidelity greatly.
Collapsing Taylor Mode Automatic Differentiation
Venue: Conference NeurIPS 2025
Year: 2025

Computing partial differential equation (PDE) operators via nested backpropagation is expensive, yet popular, and severely restricts their utility for scientific machine learning. Recent advances, like the forward Laplacian and randomizing Taylor mode automatic differentiation (AD), propose forward schemes to address this. We introduce an optimization technique for Taylor mode that 'collapses' derivatives by rewriting the computational graph, and demonstrate how to apply it to general linear PDE operators, and randomized Taylor mode. The modifications simply require propagating a sum up the computational graph, which could -- or should -- be done by a machine learning compiler, without exposing complexity to users. We implement our collapsing procedure and evaluate it on popular PDE operators, confirming it accelerates Taylor mode and outperforms nested backpropagation.
Learning Relative Gene Expression Trends from Pathology Images in Spatial Transcriptomics
Venue: Conference NeurIPS 2025
Year: 2025

Gene expression estimation from pathology images has the potential to reduce the RNA sequencing cost. Point-wise loss functions have been widely used to minimize the discrepancy between predicted and absolute gene expression values. However, due to the complexity of the sequencing techniques and intrinsic variability across cells, the observed gene expression contains stochastic noise and batch effects, and estimating the absolute expression values accurately remains a significant challenge. To mitigate this, we propose a novel objective of learning relative expression patterns rather than absolute levels. We assume that the relative expression levels of genes exhibit consistent patterns across independent experiments, even when absolute expression values are affected by batch effects and stochastic noise in tissue samples. Based on the assumption, we model the relation and propose a novel loss function called STRank that is robust to noise and batch effects. Experiments using synthetic datasets and real datasets demonstrate the effectiveness of the proposed method. The code is available at https://github.com/naivete5656/STRank.
ThinkAct: Vision-Language-Action Reasoning via Reinforced Visual Latent Planning
Venue: Conference NeurIPS 2025
Year: 2025

Vision-language-action (VLA) reasoning tasks require agents to interpret multimodal instructions, perform long-horizon planning, and act adaptively in dynamic environments. Existing approaches typically train VLA models in an end-to-end fashion, directly mapping inputs to actions without explicit reasoning, which hinders their ability to plan over multiple steps or adapt to complex task variations. In this paper, we propose ThinkAct, a dual-system framework that bridges high-level reasoning with low-level action execution via reinforced visual latent planning. ThinkAct trains a multimodal LLM to generate embodied reasoning plans guided by reinforcing action-aligned visual rewards based on goal completion and trajectory consistency. These reasoning plans are compressed into a visual plan latent that conditions a downstream action model for robust action execution on target environments. Extensive experiments on embodied reasoning and robot manipulation benchmarks demonstrate that ThinkAct enables few-shot adaptation, long-horizon planning, and self-correction behaviors in complex embodied AI tasks.
Lie Detector: Unified Backdoor Detection via Cross-Examination Framework
Venue: Conference NeurIPS 2025
Year: 2025

Institutions with limited data and computing resources often outsource model training to third-party providers in a semi-honest setting, assuming adherence to prescribed training protocols with pre-defined learning paradigm (e.g., supervised or semi-supervised learning). However, this practice can introduce severe security risks, as adversaries may poison the training data to embed backdoors into the resulting model. Existing detection approaches predominantly rely on statistical analyses, which often fail to maintain universally accurate detection accuracy across different learning paradigms. To address this challenge, we propose a unified backdoor detection framework in the semi-honest setting that exploits cross-examination of model inconsistencies between two independent service providers. Specifically, we integrate central kernel alignment to enable robust feature similarity measurements across different model architectures and learning paradigms, thereby facilitating precise recovery and identification of backdoor triggers. We further introduce backdoor fine-tuning sensitivity analysis to distinguish backdoor triggers from adversarial perturbations, substantially reducing false positives. Extensive experiments demonstrate that our method achieves superior detection performance, improving accuracy by 5.4%, 1.6%, and 11.9% over SoTA baselines across supervised, semi-supervised, and autoregressive learning tasks, respectively. Notably, it is the first to effectively detect backdoors in multimodal large language models, further highlighting its broad applicability and advancing secure deep learning.
Preference Optimization by Estimating the Ratio of the Data Distribution
Venue: Conference NeurIPS 2025
Year: 2025

Direct preference optimization (DPO) is widely used as a simple and stable method for aligning large language models (LLMs) with human preferences. This paper investigates a generalized DPO loss that enables a policy model to match the target policy from a likelihood ratio estimation perspective. The ratio of the target policy provides a unique identification of the policy distribution without relying on reward models or partition functions. This allows the generalized loss to retain both simplicity and theoretical guarantees, which prior work such as $f$-PO fails to achieve simultaneously. We propose Bregman preference optimization (BPO), a generalized framework for ratio matching that provides a family of objective functions achieving target policy optimality. BPO subsumes DPO as a special case and offers tractable forms for all instances, allowing implementation with a few lines of code. We further develop scaled Basu's power divergence (SBA), a gradient scaling method that can be used for BPO instances. The BPO framework complements other DPO variants and is applicable to target policies defined by these variants. In experiments, unlike other probabilistic loss extensions such as $f$-DPO or $f$-PO, which exhibit a trade-off between generation fidelity and diversity, instances of BPO improve both win rate and entropy compared with DPO. When applied to Llama-3-8B-Instruct, BPO achieves state-of-the-art performance among Llama-3-8B backbones, with a 55.9\% length-controlled win rate on AlpacaEval2. Project page: https://github.com/aailab-kaist/BPO.