OpenRaiser/Intern-Atlas huggingface dataset:
Cross-Lingual Generalization and Compression: From Language-Specific to Shared Neurons
Venue: Conference ACL 2025
Year: 2025

Multilingual language models (MLLMs) have demonstrated remarkable abilities to transfer knowledge across languages, despite being trained without explicit cross-lingual supervision. We analyze the parameter spaces of three MLLMs to study how their representations evolve during pre-training, observing patterns consistent with compression: models initially form language-specific representations, which gradually converge into cross-lingual abstractions as training progresses. Through probing experiments, we observe a clear transition from uniform language identification capabilities across layers to more specialized layer functions. For deeper analysis, we focus on neurons that encode distinct semantic concepts. By tracing their development during pre-training, we show how they gradually align across languages. Notably, we identify specific neurons that emerge as increasingly reliable predictors for the same concepts across languages.
ReflecTool: Towards Reflection-Aware Tool-Augmented Clinical Agents
Venue: Conference ACL 2025
Year: 2025

Large Language Models (LLMs) have shown promising potential in the medical domain, assisting with tasks like clinical note generation and patient communication. However, current LLMs are limited to text-based communication, hindering their ability to interact with diverse forms of information in clinical environments. Despite clinical agents succeeding in diverse signal interaction, they are oriented to a single clinical scenario and hence fail for broader applications. To evaluate clinical agents holistically, we propose ClinicalAgent Bench~(CAB), a comprehensive medical agent benchmark consisting of 18 tasks across five key realistic clinical dimensions. Building on this, we introduce ReflecTool, a novel framework that excels at utilizing domain-specific tools within two stages. The first optimization stage progressively enlarges a long-term memory by saving successful solving processes and tool-wise experience of agents in a tiny pre-defined training set. In the following inference stage, ReflecTool can search for supportive successful demonstrations from already built long-term memory to guide the tool selection strategy, and a verifier improves the tool usage according to the tool-wise experience with two verification methods--iterative refinement and candidate selection. Extensive experiments on ClinicalAgent Benchmark demonstrate that ReflecTool surpasses the pure LLMs with more than 10 points and the well-established agent-based methods with 3 points, highlighting its adaptability and effectiveness in solving complex clinical tasks.
HiDe-LLaVA: Hierarchical Decoupling for Continual Instruction Tuning of Multimodal Large Language Model
Venue: Conference ACL 2025
Year: 2025

Instruction tuning is widely used to improve a pre-trained Multimodal Large Language Model (MLLM) by training it on curated task-specific datasets, enabling better comprehension of human instructions. However, it is infeasible to collect all possible instruction datasets simultaneously in real-world scenarios. Thus, enabling MLLM with continual instruction tuning is essential for maintaining their adaptability. However, existing methods often trade off memory efficiency for performance gains, significantly compromising overall efficiency. In this paper, we propose a task-specific expansion and task-general fusion framework based on the variations in Centered Kernel Alignment (CKA) similarity across different model layers when trained on diverse datasets. Furthermore, we analyze the information leakage present in the existing benchmark and propose a new and more challenging benchmark to rationally evaluate the performance of different methods. Comprehensive experiments showcase a significant performance improvement of our method compared to existing state-of-the-art methods. Code and dataset are released at https://github.com/Ghy0501/HiDe-LLaVA.
Self-supervised Quantized Representation for Seamlessly Integrating Knowledge Graphs with Large Language Models
Venue: Conference ACL 2025
Year: 2025

Due to the presence of the natural gap between Knowledge Graph (KG) structures and the natural language, the effective integration of holistic structural information of KGs with Large Language Models (LLMs) has emerged as a significant question. To this end, we propose a two-stage framework to learn and apply quantized codes for each entity, aiming for the seamless integration of KGs with LLMs. Firstly, a self-supervised quantized representation (SSQR) method is proposed to compress both KG structural and semantic knowledge into discrete codes (\ie, tokens) that align the format of language sentences. We further design KG instruction-following data by viewing these learned codes as features to directly input to LLMs, thereby achieving seamless integration. The experiment results demonstrate that SSQR outperforms existing unsupervised quantized methods, producing more distinguishable codes. Further, the fine-tuned LLaMA2 and LLaMA3.1 also have superior performance on KG link prediction and triple classification tasks, utilizing only 16 tokens per entity instead of thousands in conventional prompting methods.
Finite State Automata Inside Transformers with Chain-of-Thought: A Mechanistic Study on State Tracking
Venue: Conference ACL 2025
Year: 2025

Chain-of-thought (CoT) significantly enhances the performance of large language models (LLMs) across a wide range of tasks, and prior research shows that CoT can theoretically increase expressiveness. However, there is limited mechanistic understanding of the algorithms that Transformer+CoT can learn. Our key contributions are: (1) We evaluate the state tracking capabilities of Transformer+CoT and its variants, confirming the effectiveness of CoT. (2) Next, we identify the circuit (a subset of model components, responsible for tracking the world state), indicating that late-layer MLP neurons play a key role. We propose two metrics, compression and distinction, and show that the neuron sets for each state achieve nearly 100% accuracy, providing evidence of an implicit finite state automaton (FSA) embedded within the model. (3) Additionally, we explore three challenging settings: skipping intermediate steps, introducing data noises, and testing length generalization. Our results demonstrate that Transformer+CoT learns robust algorithms (FSAs), highlighting its resilience in challenging scenarios. Our code is available at https://github.com/IvanChangPKU/FSA.
How does Misinformation Affect Large Language Model Behaviors and Preferences?
Venue: Conference ACL 2025
Year: 2025

Large Language Models (LLMs) have shown remarkable capabilities in knowledge-intensive tasks, while they remain vulnerable when encountering misinformation. Existing studies have explored the role of LLMs in combating misinformation, but there is still a lack of fine-grained analysis on the specific aspects and extent to which LLMs are influenced by misinformation. To bridge this gap, we present MisBench, the current largest and most comprehensive benchmark for evaluating LLMs' behavior and knowledge preference toward misinformation. MisBench consists of 10,346,712 pieces of misinformation, which uniquely considers both knowledge-based conflicts and stylistic variations in misinformation. Empirical results reveal that while LLMs demonstrate comparable abilities in discerning misinformation, they still remain susceptible to knowledge conflicts and stylistic variations. Based on these findings, we further propose a novel approach called Reconstruct to Discriminate (RtD) to strengthen LLMs' ability to detect misinformation. Our study provides valuable insights into LLMs' interactions with misinformation, and we believe MisBench can serve as an effective benchmark for evaluating LLM-based detectors and enhancing their reliability in real-world applications. Codes and data are available at https://github.com/GKNL/MisBench.
GALLa: Graph Aligned Large Language Models for Improved Source Code Understanding
Venue: Conference ACL 2025
Year: 2025

Programming languages possess rich semantic information - such as data flow - that is represented by graphs and not available from the surface form of source code. Recent code language models have scaled to billions of parameters, but model source code solely as text tokens while ignoring any other structural information. Conversely, models that do encode structural information of code make modifications to the Transformer architecture, limiting their scale and compatibility with pretrained LLMs. In this work, we take the best of both worlds with GALLa - Graph Aligned Large Language Models. GALLa utilizes graph neural networks and cross-modal alignment technologies to inject the structural information of code into LLMs as an auxiliary task during finetuning. This framework is both model-agnostic and task-agnostic, as it can be applied to any code LLM for any code downstream task, and requires the structural graph data only at training time from a corpus unrelated to the finetuning data, while incurring no cost at inference time over the baseline LLM. Experiments on five code tasks with seven different baseline LLMs ranging in size from 350M to 14B validate the effectiveness of GALLa, demonstrating consistent improvement over the baseline, even for powerful models such as LLaMA3 and Qwen2.5-Coder.
MEDDxAgent: A Unified Modular Agent Framework for Explainable Automatic Differential Diagnosis
Venue: Conference ACL 2025
Year: 2025

Differential Diagnosis (DDx) is a fundamental yet complex aspect of clinical decision-making, in which physicians iteratively refine a ranked list of possible diseases based on symptoms, antecedents, and medical knowledge. While recent advances in large language models (LLMs) have shown promise in supporting DDx, existing approaches face key limitations, including single-dataset evaluations, isolated optimization of components, unrealistic assumptions about complete patient profiles, and single-attempt diagnosis. We introduce a Modular Explainable DDx Agent (MEDDxAgent) framework designed for interactive DDx, where diagnostic reasoning evolves through iterative learning, rather than assuming a complete patient profile is accessible. MEDDxAgent integrates three modular components: (1) an orchestrator (DDxDriver), (2) a history taking simulator, and (3) two specialized agents for knowledge retrieval and diagnosis strategy. To ensure robust evaluation, we introduce a comprehensive DDx benchmark covering respiratory, skin, and rare diseases. We analyze single-turn diagnostic approaches and demonstrate the importance of iterative refinement when patient profiles are not available at the outset. Our broad evaluation demonstrates that MEDDxAgent achieves over 10% accuracy improvements in interactive DDx across both large and small LLMs, while offering critical explainability into its diagnostic reasoning process.
HSCR: Hierarchical Self-Contrastive Rewarding for Aligning Medical Vision Language Models
Venue: Conference ACL 2025
Year: 2025

Medical Vision-Language Models (Med-VLMs) have achieved success across various tasks, yet most existing methods overlook the modality misalignment issue that can lead to untrustworthy responses in clinical settings. In this paper, we propose Hierarchical Self-Contrastive Rewarding (HSCR), a novel approach that addresses two critical challenges in Med-VLM alignment: 1) Cost-effective generation of high-quality preference data; 2) Capturing nuanced and context-aware preferences for improved alignment. HSCR first leverages the inherent capability of Med-VLMs to generate dispreferred responses with higher sampling probability. By analyzing output logit shifts after visual token dropout, we identify modality-coupled tokens that induce misalignment and derive an implicit alignment reward function. This function guides token replacement with hallucinated ones during decoding, producing high-quality dispreferred data. Furthermore, HSCR introduces a multi-level preference optimization strategy, which extends beyond traditional adjacent-level optimization by incorporating nuanced implicit preferences, leveraging relative quality in dispreferred data to capture subtle alignment cues for more precise and context-aware optimization. Extensive experiments across multiple medical tasks, including Med-VQA, medical image captioning and instruction following, demonstrate that HSCR not only enhances zero-shot performance but also significantly improves modality alignment and trustworthiness with just 2,000 training entries.
MAmmoTH-VL: Eliciting Multimodal Reasoning with Instruction Tuning at Scale
Venue: Conference ACL 2025
Year: 2025

Open-source multimodal large language models (MLLMs) have shown significant potential in a broad range of multimodal tasks. However, their reasoning capabilities remain constrained by existing instruction-tuning datasets, which were predominately repurposed from academic datasets such as VQA, AI2D, and ChartQA. These datasets target simplistic tasks, and only provide phrase-level answers without any intermediate rationales. To address these challenges, we introduce a scalable and cost-effective method to construct a large-scale multimodal instruction-tuning dataset with rich intermediate rationales designed to elicit CoT reasoning. Using only open models, we create a dataset containing 12M instruction-response pairs to cover diverse, reasoning-intensive tasks with detailed and faithful rationales. Experiments demonstrate that training MLLMs on this dataset significantly improves reasoning capabilities, achieving state-of-the-art performance on benchmarks such as MathVerse (+8.1%), MMMU-Pro (+7%), and MuirBench (+13.3%). Additionally, the model demonstrates notable improvements of up to 4% on non-reasoning-based benchmarks. Ablation studies further highlight the importance of key components, such as rewriting and self-filtering, in the dataset construction process.
Recent Advances in Speech Language Models: A Survey
Venue: Conference ACL 2025
Year: 2025

Large Language Models (LLMs) have recently garnered significant attention, primarily for their capabilities in text-based interactions. However, natural human interaction often relies on speech, necessitating a shift towards voice-based models. A straightforward approach to achieve this involves a pipeline of ``Automatic Speech Recognition (ASR) + LLM + Text-to-Speech (TTS)", where input speech is transcribed to text, processed by an LLM, and then converted back to speech. Despite being straightforward, this method suffers from inherent limitations, such as information loss during modality conversion, significant latency due to the complex pipeline, and error accumulation across the three stages. To address these issues, Speech Language Models (SpeechLMs) -- end-to-end models that generate speech without converting from text -- have emerged as a promising alternative. This survey paper provides the first comprehensive overview of recent methodologies for constructing SpeechLMs, detailing the key components of their architecture and the various training recipes integral to their development. Additionally, we systematically survey the various capabilities of SpeechLMs, categorize their evaluation metrics, and discuss the challenges and future research directions in this rapidly evolving field. The GitHub repository is available at https://github.com/dreamtheater123/Awesome-SpeechLM-Survey
Multi-task Adversarial Attacks against Black-box Model with Few-shot Queries
Venue: Conference ACL 2025
Year: 2025

Current multi-task adversarial text attacks rely on abundant access to shared internal features and numerous queries, often limited to a single task type. As a result, these attacks are less effective against practical scenarios involving black-box feedback APIs, limited queries, or multiple task types. To bridge this gap, we propose \textbf{C}luster and \textbf{E}nsemble \textbf{M}ulti-task Text Adversarial \textbf{A}ttack (\textbf{CEMA}), an effective black-box attack that exploits the transferability of adversarial texts across different tasks. CEMA simplifies complex multi-task scenarios by using a \textit{deep-level substitute model} trained in a \textit{plug-and-play} manner for text classification, enabling attacks without mimicking the victim model. This approach requires only a few queries for training, converting multi-task attacks into classification attacks and allowing attacks across various tasks. CEMA generates multiple adversarial candidates using different text classification methods and selects the one that most effectively attacks substitute models. In experiments involving multi-task models with two, three, or six tasks--spanning classification, translation, summarization, and text-to-image generation--CEMA demonstrates significant attack success with as few as 100 queries. Furthermore, CEMA can target commercial APIs (e.g., Baidu and Google Translate), large language models (e.g., ChatGPT 4o), and image-generation models (e.g., Stable Diffusion V2), showcasing its versatility and effectiveness in real-world applications.
MM-Verify: Enhancing Multimodal Reasoning with Chain-of-Thought Verification
Venue: Conference ACL 2025
Year: 2025

According to the Test-Time Scaling, the integration of External Slow-Thinking with the Verify mechanism has been demonstrated to enhance multi-round reasoning in large language models (LLMs). However, in the multimodal (MM) domain, there is still a lack of a strong MM-Verifier. In this paper, we introduce MM-Verifier and MM-Reasoner to enhance multimodal reasoning through longer inference and more robust verification. First, we propose a two-step MM verification data synthesis method, which combines a simulation-based tree search with verification and uses rejection sampling to generate high-quality Chain-of-Thought (COT) data. This data is then used to fine-tune the verification model, MM-Verifier. Additionally, we present a more efficient method for synthesizing MMCOT data, bridging the gap between text-based and multimodal reasoning. The synthesized data is used to fine-tune MM-Reasoner. Our MM-Verifier outperforms all larger models on the MathCheck, MathVista, and MathVerse benchmarks. Moreover, MM-Reasoner demonstrates strong effectiveness and scalability, with performance improving as data size increases. Finally, our approach achieves strong performance when combining MM-Reasoner and MM-Verifier, reaching an accuracy of 65.3 on MathVista, surpassing GPT-4o (63.8) with 12 rollouts.
Investigating and Enhancing the Robustness of Large Multimodal Models Against Temporal Inconsistency
Venue: Conference ACL 2025
Year: 2025

Large Multimodal Models (LMMs) have recently demonstrated impressive performance on general video comprehension benchmarks. Nevertheless, for broader applications, the robustness of their temporal analysis capability needs to be thoroughly investigated yet predominantly ignored. Motivated by this, we propose a novel temporal robustness benchmark (TemRobBench), which introduces temporal inconsistency perturbations separately at the visual and textual modalities to assess the robustness of models. We evaluate 16 mainstream LMMs and find that they exhibit over-reliance on prior knowledge and textual context in adversarial environments, while ignoring the actual temporal dynamics in the video. To mitigate this issue, we design panoramic direct preference optimization (PanoDPO), which encourages LMMs to incorporate both visual and linguistic feature preferences simultaneously. Experimental results show that PanoDPO can effectively enhance the model's robustness and reliability in temporal analysis.
Contextual Experience Replay for Self-Improvement of Language Agents
Venue: Conference ACL 2025
Year: 2025

Large language model (LLM) agents have been applied to sequential decision-making tasks such as web navigation, but without any environment-specific experiences, they often fail in these complex tasks. Moreover, current LLM agents are not designed to continually learn from past experiences during inference time, which could be crucial for them to gain these environment-specific experiences. To address this, we propose Contextual Experience Replay (CER), a training-free framework to enable efficient self-improvement for language agents in their context window. Specifically, CER accumulates and synthesizes past experiences into a dynamic memory buffer. These experiences encompass environment dynamics and common decision-making patterns, allowing the agents to retrieve and augment themselves with relevant knowledge in new tasks, enhancing their adaptability in complex environments. We evaluate CER on the challenging WebArena and VisualWebArena benchmarks. On VisualWebArena, CER achieves a competitive performance of 31.9%. On WebArena, CER also gets a competitive average success rate of 36.7%, relatively improving the success rate of the GPT-4o agent baseline by 51.0%. We also conduct a comprehensive analysis on it to prove its efficiency, validity and understand it better.
Towards Comprehensive Argument Analysis in Education: Dataset, Tasks, and Method
Venue: Conference ACL 2025
Year: 2025

Argument mining has garnered increasing attention over the years, with the recent advancement of Large Language Models (LLMs) further propelling this trend. However, current argument relations remain relatively simplistic and foundational, struggling to capture the full scope of argument information, particularly when it comes to representing complex argument structures in real-world scenarios. To address this limitation, we propose 14 fine-grained relation types from both vertical and horizontal dimensions, thereby capturing the intricate interplay between argument components for a thorough understanding of argument structure. On this basis, we conducted extensive experiments on three tasks: argument component detection, relation prediction, and automated essay grading. Additionally, we explored the impact of writing quality on argument component detection and relation prediction, as well as the connections between discourse relations and argumentative features. The findings highlight the importance of fine-grained argumentative annotations for argumentative writing quality assessment and encourage multi-dimensional argument analysis.
MaXIFE: Multilingual and Cross-lingual Instruction Following Evaluation
Venue: Conference ACL 2025
Year: 2025

With the rapid adoption of large language models (LLMs) in natural language processing, the ability to follow instructions has emerged as a key metric for evaluating their practical utility. However, existing evaluation methods often focus on single-language scenarios, overlooking the challenges and differences present in multilingual and cross-lingual contexts. To address this gap, we introduce MaXIFE: a comprehensive evaluation benchmark designed to assess instruction-following capabilities across 23 different languages with 1667 verifiable instruction tasks. MaXIFE integrates both Rule-Based Evaluation and Model-Based Evaluation, ensuring a balance of efficiency and accuracy. We applied MaXIFE to evaluate several leading commercial LLMs, establishing baseline results for future comparisons. By providing a standardized tool for multilingual instruction-following evaluation, MaXIFE aims to advance research and development in natural language processing.