OpenRaiser/Intern-Atlas huggingface dataset:
Is Cognition Consistent with Perception? Assessing and Mitigating Multimodal Knowledge Conflicts in Document Understanding
Venue: Conference EMNLP 2025
Year: 2025

Multimodal large language models (MLLMs) have shown impressive capabilities in document understanding, a rapidly growing research area with significant industrial demand. As a multimodal task, document understanding requires models to possess both perceptual and cognitive abilities. However, due to different types of annotation noise in training, current MLLMs often face conflicts between perception and cognition. Taking a document VQA task (cognition) as an example, an MLLM might generate answers that do not match the corresponding visual content identified by its OCR (perception). This conflict suggests that the MLLM might struggle to establish an intrinsic connection between the information it "sees" and what it "understands". Such conflicts challenge the intuitive notion that cognition is consistent with perception, hindering the performance and explainability of MLLMs. In this paper, we define the conflicts between cognition and perception as Cognition and Perception (C&P) knowledge conflicts, a form of multimodal knowledge conflict, and systematically assess them with a focus on document understanding. Our analysis reveals that even GPT-4o, a leading MLLM, achieves only 75.26% C&P consistency. To mitigate the C&P knowledge conflicts, we propose a novel method called Multimodal Knowledge Consistency Fine-tuning. Our method reduces C&P knowledge conflicts across all tested MLLMs and enhances their performance in both cognitive and perceptual tasks.
MMDocIR: Benchmarking Multimodal Retrieval for Long Documents
Venue: Conference EMNLP 2025
Year: 2025

Multimodal document retrieval aims to identify and retrieve various forms of multimodal content, such as figures, tables, charts, and layout information from extensive documents. Despite its increasing popularity, there is a notable lack of a comprehensive and robust benchmark to effectively evaluate the performance of systems in such tasks. To address this gap, this work introduces a new benchmark, named MMDocIR, that encompasses two distinct tasks: page-level and layout-level retrieval. The former evaluates the performance of identifying the most relevant pages within a long document, while the later assesses the ability of detecting specific layouts, providing a more fine-grained measure than whole-page analysis. A layout refers to a variety of elements, including textual paragraphs, equations, figures, tables, or charts. The MMDocIR benchmark comprises a rich dataset featuring 1,685 questions annotated by experts and 173,843 questions with bootstrapped labels, making it a valuable resource in multimodal document retrieval for both training and evaluation. Through rigorous experiments, we demonstrate that (i) visual retrievers significantly outperform their text counterparts, (ii) MMDocIR training set effectively enhances the performance of multimodal document retrieval and (iii) text retrievers leveraging VLM-text significantly outperforms retrievers relying on OCR-text. Our dataset is available at https://mmdocrag.github.io/MMDocIR/.
Program of Thoughts for Financial Reasoning: Leveraging Dynamic In-Context Examples and Generative Retrieval
Venue: Conference EMNLP 2025
Year: 2025

Despite continuous advancements in the capabilities of large language models (LLMs), numerical reasoning remains a challenging area. Techniques like chain-of-thought prompting, tree-of-thought prompting, and program-of-thought prompting guide LLMs through intermediate reasoning steps. Although in-context learning with few-shot prompting has improved performance, LLMs still lag behind state-of-the-art models on financial numerical reasoning datasets such as FinQA and ConvFinQA. In this work, we introduce FINDER, a novel two-step framework, to enhance LLMs' capabilities in financial numerical reasoning. The first step utilizes a generative retriever to extract relevant facts from unstructured data, including both text and tables. This is followed by context-aware Program of Thought prompting with dynamic selection of in-context examples. Our model FINDER achieves a new state-of-the-art performance on both the FinQA and ConvFinQA datasets, surpassing previous benchmarks with execution accuracy improvements of 5.98% and 4.05%, respectively.
Cacheback: Speculative Decoding With Nothing But Cache
Venue: Conference EMNLP 2025
Year: 2025

We present Cacheback Decoding, a training-free and model-agnostic speculative decoding method that exploits the locality in language to accelerate Large Language Model (LLM) inference. Cacheback leverages only Least Recently Used (LRU) cache tables of token n-grams to generate draft sequences. Cacheback achieves state-of-the-art performance among comparable methods despite its minimalist design, and its simplicity allows easy integration into existing systems. Cacheback also shows potential for fast adaptation to new domains.
MA-DPR: Manifold-aware Distance Metrics for Dense Passage Retrieval
Venue: Conference EMNLP 2025
Year: 2025

Dense Passage Retrieval (DPR) typically relies on Euclidean or cosine distance to measure query-passage relevance in embedding space, which is effective when embeddings lie on a linear manifold. However, our experiments across DPR benchmarks suggest that embeddings often lie on lower-dimensional, non-linear manifolds, especially in out-of-distribution (OOD) settings, where cosine and Euclidean distance fail to capture semantic similarity. To address this limitation, we propose a manifold-aware distance metric for DPR (MA-DPR) that models the intrinsic manifold structure of passages using a nearest neighbor graph and measures query-passage distance based on their shortest path in this graph. We show that MA-DPR outperforms Euclidean and cosine distances by up to 26% on OOD passage retrieval with comparable in-distribution performance across various embedding models while incurring a minimal increase in query inference time. Empirical evidence suggests that manifold-aware distance allows DPR to leverage context from related neighboring passages, making it effective even in the absence of direct semantic overlap. MADPR can be applied to a wide range of dense embedding and retrieval tasks, offering potential benefits across a wide spectrum of domains.
LLM-Guided Co-Training for Text Classification
Venue: Conference EMNLP 2025
Year: 2025

In this paper, we introduce a novel weighted co-training approach that is guided by Large Language Models (LLMs). Namely, in our co-training approach, we use LLM labels on unlabeled data as target labels and co-train two encoder-only based networks that train each other over multiple iterations: first, all samples are forwarded through each network and historical estimates of each network's confidence in the LLM label are recorded; second, a dynamic importance weight is derived for each sample according to each network's belief in the quality of the LLM label for that sample; finally, the two networks exchange importance weights with each other -- each network back-propagates all samples weighted with the importance weights coming from its peer network and updates its own parameters. By strategically utilizing LLM-generated guidance, our approach significantly outperforms conventional SSL methods, particularly in settings with abundant unlabeled data. Empirical results show that it achieves state-of-the-art performance on 4 out of 5 benchmark datasets and ranks first among 14 compared methods according to the Friedman test. Our results highlight a new direction in semi-supervised learning -- where LLMs serve as knowledge amplifiers, enabling backbone co-training models to achieve state-of-the-art performance efficiently.
LeanK: Learnable K Cache Channel Pruning for Efficient Decoding
Venue: Conference EMNLP 2025
Year: 2025

Large language models (LLMs) enable long-context tasks but face efficiency challenges due to the growing key-value (KV) cache. We propose LeanK, a learning-based method that prunes unimportant key (K) cache channels by leveraging static channel sparsity. With a novel two-stage training process, LeanK learns channel-wise static mask that could satisfy specific sparsity ratio and hardware alignment requirement. LeanK reduces GPU memory and accelerates decoding without sacrificing accuracy. Experiments demonstrate up to 70% K cache and 16%-18% V cache memory reduction. Custom decoding kernel enables 1.3x speedup for attention computation. We also provide insights into model channels and attention heads during long-context inference by analyzing the learned importance distribution. Our code is available at https://aka.ms/LeanK.
Prior Prompt Engineering for Reinforcement Fine-Tuning
Venue: Conference EMNLP 2025
Year: 2025

This paper investigates prior prompt engineering (pPE) in the context of reinforcement fine-tuning (RFT), where language models (LMs) are incentivized to exhibit behaviors that maximize performance through reward signals. While existing RFT research has primarily focused on algorithms, reward shaping, and data curation, the design of the prior prompt--the instructions prepended to queries during training to elicit behaviors such as step-by-step reasoning--remains underexplored. We investigate whether different pPE approaches can guide LMs to internalize distinct behaviors after RFT. Inspired by inference-time prompt engineering (iPE), we translate five representative iPE strategies--reasoning, planning, code-based reasoning, knowledge recall, and null-example utilization--into corresponding pPE approaches. We experiment with Qwen2.5-7B using each of the pPE approaches, then evaluate performance on in-domain and out-of-domain benchmarks (e.g., AIME2024, HumanEval+, and GPQA-Diamond). Our results show that all pPE-trained models surpass their iPE-prompted counterparts, with the null-example pPE approach achieving the largest average performance gain and the highest improvement on AIME2024 and GPQA-Diamond, surpassing the commonly used reasoning approach. Furthermore, by adapting a behavior-classification framework, we demonstrate that different pPE strategies instill distinct behavioral styles in the resulting models. These findings position pPE as a powerful yet understudied axis for RFT.
ThinkTuning: Instilling Cognitive Reflections without Distillation
Venue: Conference EMNLP 2025
Year: 2025

Recent advances in test-time scaling have led to the emergence of thinking LLMs that exhibit self-reflective behaviors and multi-step reasoning. While RL drives this self-improvement paradigm, a recent study (Gandhi et al., 2025) shows that RL alone does not truly instill these new reasoning abilities - it merely draws out behaviors already present in the base models. This raises a question: How can we train the models that don't exhibit such thinking behavior to develop it in the first place? To this end, we propose ThinkTuning, a GRPO-based interactive training approach where we augment the rollouts of a student model with the guidance from a teacher model. A simple idea from classroom practice inspires our method: a teacher poses a problem, lets the student try an answer, then gives corrective feedback -- enough to point the mind in the right direction and then show the solution. Each piece of feedback reshapes the student's thoughts, leading them to arrive at the correct solution. Similarly, we find that this type of implicit supervision through feedback from a teacher model of the same size improves the reasoning capabilities of the student model. In particular, on average, our method shows a 3.85% improvement over zero-shot baselines across benchmarks, and on MATH-500, AIME and GPQA-Diamond it shows 2.08%, 2.23% and 3.99% improvements over the vanilla-GRPO baseline. Source code is available at https://github.com/3rdAT/ThinkTuning.
Same Question, Different Words: A Latent Adversarial Framework for Prompt Robustness
Venue: Conference EMNLP 2025
Year: 2025

Insensitivity to semantically-preserving variations of prompts (paraphrases) is crucial for reliable behavior and real-world deployment of large language models. However, language models exhibit significant performance degradation when faced with semantically equivalent but differently phrased prompts, and existing solutions either depend on trial-and-error prompt engineering or require computationally expensive inference-time algorithms. In this study, built on the key insight that worst-case prompts exhibit a drift in embedding space, we present Latent Adversarial Paraphrasing (LAP), a dual-loop adversarial framework: the inner loop trains a learnable perturbation to serve as a "latent continuous paraphrase" while preserving semantics through Lagrangian regulation, and the outer loop optimizes the language model parameters on these perturbations. We conduct extensive experiments to demonstrate the effectiveness of LAP across multiple LLM architectures on the RobustAlpaca benchmark with a 0.5%-4% absolution improvement on worst-case win-rate compared with vanilla supervised fine-tuning.
Pluralistic Alignment for Healthcare: A Role-Driven Framework
Venue: Conference EMNLP 2025
Year: 2025

As large language models are increasingly deployed in sensitive domains such as healthcare, ensuring their outputs reflect the diverse values and perspectives held across populations is critical. However, existing alignment approaches, including pluralistic paradigms like Modular Pluralism, often fall short in the health domain, where personal, cultural, and situational factors shape pluralism. Motivated by the aforementioned healthcare challenges, we propose a first lightweight, generalizable, pluralistic alignment approach, EthosAgents, designed to simulate diverse perspectives and values. We empirically show that it advances the pluralistic alignment for all three modes across seven varying-sized open and closed models. Our findings reveal that health-related pluralism demands adaptable and normatively aware approaches, offering insights into how these models can better respect diversity in other high-stakes domains.
Flexible-length Text Infilling for Discrete Diffusion Models
Venue: Conference EMNLP 2025
Year: 2025

Discrete diffusion models are a new class of text generators that offer advantages such as bidirectional context use, parallelizable generation, and flexible prompting compared to autoregressive models. However, a critical limitation of discrete diffusion models is their inability to perform flexible-length or flexible-position text infilling without access to ground-truth positional data. We introduce \textbf{DDOT} (\textbf{D}iscrete \textbf{D}iffusion with \textbf{O}ptimal \textbf{T}ransport Position Coupling), the first discrete diffusion model to overcome this challenge. DDOT jointly denoises token values and token positions, employing a novel sample-level Optimal Transport (OT) coupling. This coupling preserves relative token ordering while dynamically adjusting the positions and length of infilled segments, a capability previously missing in text diffusion. Our method is orthogonal to existing discrete text diffusion methods and is compatible with various pretrained text denoisers. Extensive experiments on text infilling benchmarks such as One-Billion-Word and Yelp demonstrate that DDOT outperforms naive diffusion baselines. Furthermore, DDOT achieves performance on par with state-of-the-art non-autoregressive models and enables significant improvements in training efficiency and flexibility.
Beyond the Leaderboard: Understanding Performance Disparities in Large Language Models via Model Diffing
Venue: Conference EMNLP 2025
Year: 2025

As fine-tuning becomes the dominant paradigm for improving large language models (LLMs), understanding what changes during this process is increasingly important. Traditional benchmarking often fails to explain why one model outperforms another. In this work, we use model diffing, a mechanistic interpretability approach, to analyze the specific capability differences between Gemma-2-9b-it and a SimPO-enhanced variant. Using crosscoders, we identify and categorize latent representations that differentiate the two models. We find that SimPO acquired latent concepts predominantly enhance safety mechanisms (+32.8%), multilingual capabilities (+43.8%), and instruction-following (+151.7%), while its additional training also reduces emphasis on model self-reference (-44.1%) and hallucination management (-68.5%). Our analysis shows that model diffing can yield fine-grained insights beyond leaderboard metrics, attributing performance gaps to concrete mechanistic capabilities. This approach offers a transparent and targeted framework for comparing LLMs.
Beyond Pairwise: Global Zero-shot Temporal Graph Generation
Venue: Conference EMNLP 2025
Year: 2025

Temporal relation extraction (TRE) is a fundamental task in natural language processing (NLP) that involves identifying the temporal relationships between events in a document. Despite the advances in large language models (LLMs), their application to TRE remains limited. Most existing approaches rely on pairwise classification, where event pairs are classified in isolation, leading to computational inefficiency and a lack of global consistency in the resulting temporal graph. In this work, we propose a novel zero-shot method for TRE that generates a document's complete temporal graph in a single step, followed by temporal constraint optimization to refine predictions and enforce temporal consistency across relations. Additionally, we introduce OmniTemp, a new dataset with complete annotations for all pairs of targeted events within a document. Through experiments and analyses, we demonstrate that our method outperforms existing zero-shot approaches and offers a competitive alternative to supervised TRE models.
How Do Social Bots Participate in Misinformation Spread? A Comprehensive Dataset and Analysis
Venue: Conference EMNLP 2025
Year: 2025

Social media platforms provide an ideal environment to spread misinformation, where social bots can accelerate the spread. This paper explores the interplay between social bots and misinformation on the Sina Weibo platform. We construct a large-scale dataset that includes annotations for both misinformation and social bots. From the misinformation perspective, the dataset is multimodal, containing 11,393 pieces of misinformation and 16,416 pieces of verified information. From the social bot perspective, this dataset contains 65,749 social bots and 345,886 genuine accounts, annotated using a weakly supervised annotator. Extensive experiments demonstrate the comprehensiveness of the dataset, the clear distinction between misinformation and real information, and the high quality of social bot annotations. Further analysis illustrates that: (i) social bots are deeply involved in information spread; (ii) misinformation with the same topics has similar content, providing the basis of echo chambers, and social bots would amplify this phenomenon; and (iii) social bots generate similar content aiming to manipulate public opinions.
Multi-Modal Framing Analysis of News
Venue: Conference EMNLP 2025
Year: 2025

Automated frame analysis of political communication is a popular task in computational social science that is used to study how authors select aspects of a topic to frame its reception. So far, such studies have been narrow, in that they use a fixed set of pre-defined frames and focus only on the text, ignoring the visual contexts in which those texts appear. Especially for framing in the news, this leaves out valuable information about editorial choices, which include not just the written article but also accompanying photographs. To overcome such limitations, we present a method for conducting multi-modal, multi-label framing analysis at scale using large (vision-) language models. Grounding our work in framing theory, we extract latent meaning embedded in images used to convey a certain point and contrast that to the text by comparing the respective frames used. We also identify highly partisan framing of topics with issue-specific frame analysis found in prior qualitative work. We demonstrate a method for doing scalable integrative framing analysis of both text and image in news, providing a more complete picture for understanding media bias.
ComicScene154: A Scene Dataset for Comic Analysis
Venue: Conference EMNLP 2025
Year: 2025

Comics offer a compelling yet under-explored domain for computational narrative analysis, combining text and imagery in ways distinct from purely textual or audiovisual media. We introduce ComicScene154, a manually annotated dataset of scene-level narrative arcs derived from public-domain comic books spanning diverse genres. By conceptualizing comics as an abstraction for narrative-driven, multimodal data, we highlight their potential to inform broader research on multi-modal storytelling. To demonstrate the utility of ComicScene154, we present a baseline scene segmentation pipeline, providing an initial benchmark that future studies can build upon. Our results indicate that ComicScene154 constitutes a valuable resource for advancing computational methods in multimodal narrative understanding and expanding the scope of comic analysis within the Natural Language Processing community.
Extractive Fact Decomposition for Interpretable Natural Language Inference in one Forward Pass
Venue: Conference EMNLP 2025
Year: 2025

Recent works in Natural Language Inference (NLI) and related tasks, such as automated fact-checking, employ atomic fact decomposition to enhance interpretability and robustness. For this, existing methods rely on resource-intensive generative large language models (LLMs) to perform decomposition. We propose JEDI, an encoder-only architecture that jointly performs extractive atomic fact decomposition and interpretable inference without requiring generative models during inference. To facilitate training, we produce a large corpus of synthetic rationales covering multiple NLI benchmarks. Experimental results demonstrate that JEDI achieves competitive accuracy in distribution and significantly improves robustness out of distribution and in adversarial settings over models based solely on extractive rationale supervision. Our findings show that interpretability and robust generalization in NLI can be realized using encoder-only architectures and synthetic rationales. Code and data available at https://jedi.nicpopovic.com
Label Set Optimization via Activation Distribution Kurtosis for Zero-Shot Classification with Generative Models
Venue: Conference EMNLP 2025
Year: 2025

In-context learning (ICL) performance is highly sensitive to prompt design, yet the impact of class label options (e.g. lexicon or order) in zero-shot classification remains underexplored. This study proposes LOADS (Label set Optimization via Activation Distribution kurtosiS), a post-hoc method for selecting optimal label sets in zero-shot ICL with large language models (LLMs). LOADS is built upon the observations in our empirical analysis, the first to systematically examine how label option design (i.e., lexical choice, order, and elaboration) impacts classification performance. This analysis shows that the lexical choice of the labels in the prompt (such as agree vs. support in stance classification) plays an important role in both model performance and model's sensitivity to the label order. A further investigation demonstrates that optimal label words tend to activate fewer outlier neurons in LLMs' feed-forward networks. LOADS then leverages kurtosis to measure the neuron activation distribution for label selection, requiring only a single forward pass without gradient propagation or labelled data. The LOADS-selected label words consistently demonstrate effectiveness for zero-shot ICL across classification tasks, datasets, models and languages, achieving maximum performance gain from 0.54 to 0.76 compared to the conventional approach of using original dataset label words.