# Chemical Sciences: A Manual for CSIR-UGC National Eligibility Test for Lectureship and JRF/Fourier transform ion cyclotron resonance

Fourier transform ion cyclotron resonance mass spectrometry, also known as Fourier transform mass spectrometry, is a type of mass analyzer (or mass spectrometer) for determining the mass-to-charge ratio (m/z) of ions based on the cyclotron frequency of the ions in a fixed magnetic field. The ions are trapped in a Penning trap (a magnetic field with electric trapping plates) where they are excited to a larger cyclotron radius by an oscillating electric field perpendicular to the magnetic field. The excitation also results in the ions moving in phase (in a packet). The signal is detected as an image current on a pair of plates which the packet of ions passes close to as they cyclotron. The resulting signal is called a free induction decay (FID), transient or interferogram that consists of a superposition of sine waves. The useful signal is extracted from this data by performing a Fourier transform to give a mass spectrum.
Fourier transform ion cyclotron resonance (FTICR) mass spectrometry is a very high resolution technique in that masses can be determined with very high accuracy. Many applications of FTICR-MS use this mass accuracy to help determine the composition of molecules based on accurate mass. This is possible due to the mass defect of the elements. FT-ICR MS is able to achieve higher levels of resolution than other forms of mass spectrometry, in part, because a superconducting magnet is much more stable than rf voltage. Another place that FTICR-MS is useful is in dealing with complex mixtures since the resolution (narrow peak width) allows the signals of two ions of similar mass to charge (m/z) to be detected as distinct ions. This high resolution is also useful in studying large macromolecules such as proteins with multiple charges which can be produced by electrospray ionization. For example, attomole level of detection of two peptides has been reported . These large molecules contain a distribution of isotopes that produce a series of isotopic peaks. Because the isotopic peaks are close to each other on the m/z axis, due to the multiple charges, the high resolving power of the FTICR is extremely useful.
FTICR-MS differs significantly from other mass spectrometry techniques in that the ions are not detected by hitting a detector such as an electron multiplier but only by passing near detection plates. Additionally the masses are not resolved in space or time as with other techniques but only by the cyclotron (rotational) frequency that each ion produces as it rotates in a magnetic field. Thus, the different ions are not detected in different places as with sector instruments or at different times as with time-of-flight instruments but all ions are detected simultaneously over some given period of time. In FT-ICR MS, resolution can be improved by increasing the strength of the magnet (in teslas) and by increasing the magnet's bore diameter.

## History

FT-ICR was invented by Alan G. Marshall and Melvin B. Comisarow at the University of British Columbia. The first paper appeared in Chemical Physics Letters in 1974. The inspiration was earlier developments in conventional ICR and Fourier Transform Nuclear Magnetic Resonance (FT-NMR) spectroscopy. Marshall has continued to develop the technique at The Ohio State University and Florida State University.

## Theory

The physics of FTICR is similar to that of a cyclotron at least in the first approximation.
In the simplest form (idealized) the relationship between the cyclotron frequency and the mass to charge ratio is given by:
    $f={\frac {qB}{2\pi m}}$
where f = cyclotron frequency, q = ion charge, B = magnetic field strength and m = ion mass.
This is more often represented in angular frequency:
    $\omega _{c}={\frac {qB}{m}}$
where $\omega _{c}$ is the angular cyclotron frequency which is related to frequency by the definition $f={\frac {\omega }{2\pi }}$.
Because of the quadrupolar electrical field used to trap the ions in the axial direction this relationship is only approximate. The axial electrical trapping results in axial oscillations within the trap with the (angular) frequency:
    $\omega _{t}={\sqrt {\frac {q\alpha }{m}}}$
Where $\alpha$ is a constant similar to the spring constant of a harmonic oscillator and is dependent on voltage and the trap dimensions and geometry.
The electric field and the resulting axial harmonic motion reduces the cyclotron frequency and introduces a second radial motion called magnetron motion that occurs at the magnetron frequency. The cyclotron motion is still the frequency being used but the relationship above is not exact due to this phenomenon. The natural angular frequencies of motion are:
    $\omega _{\pm }={\frac {\omega _{c}}{2}}\pm {\sqrt {\left({\frac {\omega _{c}}{2}}\right)^{2}-\left({\frac {\omega _{t}}{2}}\right)^{2}}}$
where $\omega _{t}$ is the axial trapping frequency due the axial electrical trapping and $\omega _{+}$ is the reduced cyclotron (angular) frequency and $\omega _{-}$ is the magnetron (angular) frequency. Again $\omega _{+}$ is what is typically measured in FTICR. The meaning of this equation can be understood qualitatively by considering the case where $\omega _{t}$ is small, which is generally true. In that case the value of the radical is just slightly less than $\omega _{c}/2$ and the value of $\omega _{+}$ is just slightly less than $\omega _{c}$ (the cyclotron frequency has been slightly reduced). For $\omega _{-}$ the value of the radical is the same (slightly less than $\omega _{c}/2$) but it is being subtracted from $\omega _{c}/2$ resulting in a small number equal to $\omega _{c}-\omega _{+}$ (i.e. the exact amount that the cyclotron frequency was reduced by).

## ICR cell types

A review of different cell geometries with their specific electric configurations is available in the literature. However, ICR cells can belong to one of the following two categories.

### Closed cells

Several closed ICR cells with different geometries were fabricated and their performance has been characterized. Grids were used as end caps to apply an axial electric field for trapping ions axially (parallel to the magnetic field lines). Ions can be either generated inside the cell (by Electron impact ionization) or can be injected to the cell from an external ionization source (such as Electrospray or MALDI). Nested ICR cells with double pair of grids were also fabricated to trap both positive and negative ions simultaneously.

### Open cells

The most common geometry is a cylinder, which is axially segmented into different parts to produce different ring electrodes. The central ring electrode is generally used for applying radial excitation electric field and detection. DC electric voltage is applied on the terminal ring electrodes to trap ions along the magnetic field lines. Open cylindrical cells with ring electrodes of different diameters have also been designed. They proved not only capable in trapping and detecting both ion polarities simultaneously, but also they succeeded to separate positive from negative ions radially. This presented a large discrimination in kinetic ion acceleration between positive and negative ions trapped simultaneously inside the new cell. Several ion axial acceleration schemes were recently written for ion-ion collision studies

## Stored waveform inverse Fourier transform

Stored waveform inverse Fourier transform (SWIFT) is a method for the creation of excitation waveforms for FTMS. The time-domain excitation waveform is formed from the inverse Fourier transform of the appropriate frequency-domain excitation spectrum, which is chosen to excite the resonance frequencies of selected ions. The SWIFT procedure can be used to select ions for tandem mass spectrometry experiments.

## References

* ↑ Marshall, A. G.; Hendrickson, C. L.; Jackson, G. S., Fourier transform ion cyclotron resonance mass spectrometry: a primer. Mass Spectrom Rev 17, 1-35.
* ↑ Shi, S (2000). "Comparison and interconversion of the two most common frequency-to-mass calibration functions for Fourier transform ion cyclotron resonance mass spectrometry". International Journal of Mass Spectrometry. 195–196: 591. doi:10.1016/S1387-3806(99)00226-2.
* ↑ Sleno L, Volmer DA, Marshall AG (2005). "Assigning product ions from complex MS/MS spectra: the importance of mass uncertainty and resolving power". J. Am. Soc. Mass Spectrom. 16 (2): 183–98. doi:10.1016/j.jasms.2004.10.001. PMID 15694769. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
* ↑ Bossio RE, Marshall AG (2002). "Baseline resolution of isobaric phosphorylated and sulfated peptides and nucleotides by electrospray ionization FTICR ms: another step toward mass spectrometry-based proteomics". Anal. Chem. 74 (7): 1674–9. doi:10.1021/ac0108461. PMID 12033259. {{cite journal}}: Unknown parameter |month= ignored (help)
* ↑ He F, Hendrickson CL, Marshall AG (2001). "Baseline mass resolution of peptide isobars: a record for molecular mass resolution". Anal. Chem. 73 (3): 647–50. doi:10.1021/ac000973h. PMID 11217775. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
* ↑ Solouki T, Marto JA, White FM, Guan S, Marshall AG (1995). "Attomole biomolecule mass analysis by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance". Anal. Chem. 67 (22): 4139–44. doi:10.1021/ac00118a017. PMID 8633766. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link)
* ↑ Marshall, A (2002). "Fourier transform ion cyclotron resonance detection: principles and experimental configurations". International Journal of Mass Spectrometry. 215: 59. doi:10.1016/S1387-3806(01)00588-7.
* ↑ "UBC Chemistry Personnel: Melvin B. Comisarow". University of British Columbia. Retrieved 2009-11-05.
* ↑ M.B. Comisarow and A.G. Marshall, Chem. Phys. Lett. 25, 282 (1974)
* ↑ S. Guan, A. G. Marshall, Int. J. Mass Spectrom., 146/147 (1995) 261
* ↑ Kanawati, B. (2007). "Characterization of a new open cylindrical ion cyclotron resonance cell with unusual geometry". Review of Scientific Instruments. 78: 074102. doi:10.1063/1.2751100. {{cite journal}}: |first2= missing |last2= (help)
* ↑ Kanawati, B (2008). "Characterization of a new open cylindrical ICR cell for ion–ion collision studies☆". International Journal of Mass Spectrometry. 269: 12. doi:10.1016/j.ijms.2007.09.007. {{cite journal}}: |first2= missing |last2= (help)
* ↑ Cody, R. B. (1987). "Stored waveform inverse fourier transform excitation for obtaining increased parent ion selectivity in collisionally activated dissociation: Preliminary results". Rapid Communications in Mass Spectrometry. 1: 99. doi:10.1002/rcm.1290010607. {{cite journal}}: |first2= missing |last2= (help); |first3= missing |last3= (help); |first4= missing |last4= (help)