OpenLLM-France/wikimedia huggingface dataset:
# GENtle/Proteolysis assistant

The proteolysis assistant can be invoked from the protein module. It can help with choosing proteases for limited proteolysis, separation of protein domains, etc. There are several list boxes which depend on each other, so it may appear confusing initially.
* First and foremost, the protein is virtually cleaved by the proteases checked in the Proteases list. The cuts from all these proteases in the protein are shown in the Cuts list. The fragments resulting from these cuts are shown in the Resulting fragments list, as well as in the Gel simulation.
* If you know that certain cuts do not take place (e.g., because the recognition motif is protected) you can deselect (uncheck) these cuts in the Cuts list.
* If you know that certain annotated features of the protein are protected from proteases, you can check them in the Protect features list.
* If you want to separate annotated features(e.g., domains) of your protein via proteases, you can select two or more features in the Separate fragments list. Depending on your selection and the state of Maximum number of proteases, the Cocktail suggestions list will be filled with proteases (or combinations of such) that will do the job. Selecting one of these "cocktails", a more detailed description will be shown below the list, and the respective proteases will be selected in the Proteases list.
The final result of all these settings is the Resulting fragments list. You can Sort fragments by cut position, fragment length, or size (weight). You can check individual fragments, All or None of them. Upon OK, several actions can be performed on the selected fragments:
* Create selected fragments will create a new protein module for each selectged fragment
* Annotate selected fragments will add a feature for each of the selected fragments in the current protein module
* Keep proteases will add the proteases selected in the Proteases list to the current protein module
# GENtle/Projects

A project in GENtle is a collection of sequences that belong together, even if they are in different databases. Projects can be
* loaded via File/Load Project or F11
* saved via File/Save Project or F12
* closed via File/Close Project
Depending on the options, the last used project is automatically opened when GENtle starts.
Projects consists of a list of sequences, not the sequences themselves. If a sequence is renamed, moved or deleted, GENtle will dispay a warning next time a project containing that sequence is opened.
For efficient use of sequencing primers, one can create a project that contains all available sequencing primers, and then refer to that project in the Sequencing Primers dialog.
# GENtle/Restriction Assistant

The Restriction Assistant can be invoked via menu Tools/Enzyme Assistant, or through a click with the middle mouse button on a restriction site in the DNA map. For the latter, the selected enzyme is automatically selected in the list of "Available enzymes" (left). This list depends on the selections "Group" and "Subselection". It can be sorted by enzyme name or number of cuts by clicking on the respective column title. For a selected enzyme, the resulting fragments are shown in the lower left list.
The list on the right shows the contents of the "restriction cocktail", the enzymes already selected for cutting. The resulting fragments for these enzymes together are shown in the lower right list. The enzyme selected in the left list can be put in the cocktail via Add to cocktail; all enzymes from the left list can be added at once via Add all. An enzyme can be removed from the cocktail by selecting it in the right list, then via Remove enzyme.
Do not create fragments below ___ base pairs, when selected, limits the fragments generated to a minimum size. Done exits the restriction assistant while preserving the changes mage to the cocktail, whereas Cancel will void all changes made.
Start restriction (the scissors symbol) will initiate the simulated restriction. The result of this can be influenced by several further settings:
* Create fragments will generate the actual DNA sequences with their blunt/sticky ends that will result from a digestion with the cocktail. This option is pre-selected.
* Add to gel will add the fragments to a virtual gel, together in one lane.
* One lane each will alter the above so that each enzyme gets its own lane.
* Partial restriction will add all possible fragments to a virtual gel lane, simulating a partial (incomplete) restriction. The option One lane each is not available when Partial restriction is checked.
The restriction cocktail will be preserved so you can cut another DNA with that very enzyme combination, which is useful for an upcoming Ligation.
# GENtle/Printing

Sequence and DNA maps can be printed via the respective context menus or the File menu.
For DNA sequences, a report can be printed via File/Print report. It contains the DNA map and a list of the features annotated in the sequence. This can be useful for a detailed overview of the sequence where the sequence itself is not required.
# GENtle/Release notes
### 1.9.5 alpha 2 (in preparation)

* Source code reorganisation to prepare for automated testing.
* Documentation transitioned from Wikibooks to Markdown into the code tree (docs/manual.adoc).
* https access to NCBI web services like pubmed
This version is yet not stable enough for professional work.

### 1.9.5 alpha 1

Initial port to wxWidgets 3.

### 1.9.4

Last version available for wxWidgets 2

### 1.9.0

Additions
* Chinese language interface

### 1.8.8

Additions
* DNA can optionally be displayed in lowercase
* In the PCR module, amino acids that change due to primers are now marked in the resulting amino acid sequence
Bugfixes
* Silent mutation now shows correct fragment lengths
* Fixed screen update after undo bug
* Fixed dialog layout on OSX

### 1.8.6

Additions
* Sequencer data can not be viewed "in part" (via both context menu and command line options)
* Amino acid structures can now be displayed inline in the amino acid module
* The font size of the sequence can now be adjusted (for both screen and printer)
Bugfixes
* Find dialog now marks found restriction enzymes with correct length

### 1.8.5

Additions
* ~200 new restriction enzymes
* restriction enzyme can now be updated from ReBase
* partial restrictions can now be added to virtual gels
* virtual gels can now be copied/saved as images
* Lane names can now be changed in virtual gels
Bugfixes
* Fixed bug for non-palindromic restriction enzymes
* Fixed bug preventing saving of some plasmid maps

### 1.8.4

Additions
* Clone Manager import (limited due to lack of format description)
Bugfixes
* Fixed bug in auto-annotation

### 1.8.3

Additions
* Can now chose to search for sequence, items, enzymes, translations in Find Dialog
* Can now edit and delete restriction enzymes
Bugfixes
* Minor calculator bugs fixed
* Inserting restriction enzyme sites in PCR while editing used to crash, now fixed

### 1.8.2

Additions
* Option for using two toolbars
* Larger toolbar icons for Mac
* Highlighting function in Find dialog
* Online tools (via context menu) for DNA, protein, and alignments
* Module/Dialog-sensitive online help
Bugfixes
* fixed module refresh bug
* fixed search for restriction enzymes in Find dialog
* fixed coding region detection bug under Mac
* fixed virtual gel printing bug

### 1.8.1

Notes
* TIFF export deactivated due to patent enforcement
Additions
* Alignments can now be edited markup-wise
* Startup tips (re-)enabled
Bugfixes
* New sequences with more than 64KB text can now be entered again
* "OK" in Silmut/WhatCutsHere dialog with no entry selected doesn't crash anymore
* DNA markers can now be added and edited via "marker.txt"
* siRNA duplexes fix for features that cross the "zero" point
* fixed protease display in DNA module
* fixed 3'->5' strand extraction
* fixed enumeration bug when adding databases
* fixed restriction enzyme recognition/display bug

### 1.8.0

Additions
* new icons for Windows
* multiple DNA markers for virtual gel
* find siRNA duplexes
* turn plasmid map
* enforcing global (alternative) translation table
Bugfixes
* better Mac/Linux integration
* Miscellaneous
# Gothic/2/Goals

Hails!
* Introduction
* Gothic on your Computer
* Gothic Alphabet
* Accentuation
* Chapter Vocabulary
* Cases of the Noun
* Pronouns
* Conjugation of the weak Verb
* Word Declension
* Exercises
* Reading texts
* Chapter Vocabulary
* Adjectives
* Adverbs
* Numbers
* Exercises
* Chapter Vocabulary
* Word Order
* Strong verbs
* Comparatives
* Conjunctions
* Neologisms
* Exercises
* Chapter Vocabulary
* Gothic-to-English Translation Exercises
* English-to-Gothic Translation Exercises
* Neologism Exercises
* Further Resources
* Gothic Glossary
* Answers to Exercises

### Chapter 2 Goals

In Chapter 2 you will learn:
* The difference between the strong and weak verb or noun
* The different stems in gothic and how to use them.
* The different cases in how to write things in Gothic and how to use them.
* How to change words from case to case.
* The differences in Gender.
* The several Gothic pronouns and when to use them.
* Several words, which will be in one case, but you will have to use them in other cases. The genders will be mixed, so you will have to memorize how to conjugate (change) each verb (word describing action), and such.
Chapter 2 will probably the most complex and difficult chapter that you will go through. After this chapter, everything else should be pretty much smooth sailing.
# Gothic/2/Cases

Hails!
* Introduction
* Gothic on your Computer
* Gothic Alphabet
* Accentuation
* Chapter Vocabulary
* Cases of the Noun
* Pronouns
* Conjugation of the weak Verb
* Word Declension
* Exercises
* Reading texts
* Chapter Vocabulary
* Adjectives
* Adverbs
* Numbers
* Exercises
* Chapter Vocabulary
* Word Order
* Strong verbs
* Comparatives
* Conjunctions
* Neologisms
* Exercises
* Chapter Vocabulary
* Gothic-to-English Translation Exercises
* English-to-Gothic Translation Exercises
* Neologism Exercises
* Further Resources
* Gothic Glossary
* Answers to Exercises

### What is a Case?

In the simplest terms, a case determines the function of a word in a sentence. Gothic has five cases: the nominative, genitive, dative, accusative, and vocative.
* The Nominative Case indicates the subject of a sentence. Generally, the noun "that is doing something" is in the nominative. Example: The man went to the store.
* The Genitive Case indicates an attributive relationship of one noun to the other noun, or in simpler terms, the genitive case indicates to whom an object belongs. Example: This is the man's store.
* The Dative Case indicates the indirect object of a sentence. Example: The man gave the money to the storekeeper.
* The Accusative Case indicates the direct object of a sentence or transitive verb. Example: The man bought food.
* The Vocative Case is used when you directly talk to someone, for example: "My brother, listen to me!" or "My friend, go with me".
Certain Gothic verbs, pronouns, and adjectives must modify a case.
# Gothic/1/Accentuation

Hails!
* Introduction
* Gothic on your Computer
* Gothic Alphabet
* Accentuation
* Chapter Vocabulary
* Cases of the Noun
* Pronouns
* Conjugation of the weak Verb
* Word Declension
* Exercises
* Reading texts
* Chapter Vocabulary
* Adjectives
* Adverbs
* Numbers
* Exercises
* Chapter Vocabulary
* Word Order
* Strong verbs
* Comparatives
* Conjunctions
* Neologisms
* Exercises
* Chapter Vocabulary
* Gothic-to-English Translation Exercises
* English-to-Gothic Translation Exercises
* Neologism Exercises
* Further Resources
* Gothic Glossary
* Answers to Exercises

### Pronunciation

Pronunciation refers to how a word is pronounced. No matter what language it is you are studying, pronunciation is important. For example in English, the word "record" has two different accentuations which can completely change its meaning, and its relation to the whole sentence - with the stress on the first syllable, it is a noun, but with stress on the second syllable, it is a verb.
To understand how to accent words, you must understand the concept of a syllable. A syllable is simply what can be considered one sound within a sentence. For example, the word sentence has two syllables: "sen·tence", and "considered" has three: "con·sid·ered". A simple way to detect the amount of syllables in a word is to pronounce the word out loud, with your hand on your chin. Counting the amount of times you chin extends down will give you the approximate amount of syllables within a sentence.

### Pronunciation in Gothic

Pronunciation in Gothic is much simpler than that of English. In simple words, the stress always falls on the first syllable, even if the word has a prefix (something attached to the beginning of the word) or a suffix (something attached to the end of the word). Compound words, however, have a different pronunciation. If the second element of the word is a noun or an adjective, the rule for simple words is followed. However, in words where the second element is a verb, the first syllable of the second element is what is stressed.
# Horticulture/Brassicaceae

Brassicaceae, formerly known as Cruciferae, is a large family of plants that includes mustards, cabbages, and numerous other species, including both garden plants and weeds. Members of the family share the distinguishing characteristic of the cross-shaped flowers, which give them their common group name, the crucifers.
Most plants in the family are edible, though most species are so astringent as to be unpalatable to most tastes.

## Genera treated

* Alliaria
   * Alliaria petiolata (Garlic Mustard)
* Brassica
* Cardamine
   * Cardamine hirsuta (Bittercress)
* Hesperis
   * Herperis matronalis (Dame's Rocket)
* Nasturtium
* Rorippa
   * Rorippa sylvestris (Field Yellowcress)
# Horticulture/Bidens frondosa

Devil's beggartick :
| Binomial: | Bidens frondosa |
| Type: | Annual |
| Conditions: | Adaptable, most frequent in wet soils |
| Seed Dispersal: | Sticky seeds, spread by animals |
| Germination Time: | Spring |
| Ripe Seed: | Mid autumn |
| Vegetative Spread: | none |
Devil's beggartick (Bidens frondosa) is an annual herb in the family Asteraceae, native to North America.
This plant is known by a variety of different names, including Bur Marigold, Devil's Bootjack, Devil's pitchfork, Pitchfork Weed, and Sticktight.
The sticky seeds make this plant a nuisance for pet and livestock owners, and it is generally seen as a weed.

## Description

It looks similar to a Dahlia plant, up to 2 m tall, usually with reddish stems. Its flowers are yellow, produced in early autumn, followed by numerous seeds with hooked barbs that attach onto passing animals' fur or clothing or sometimes even skin which allow the seeds to be dispersed widely.

## Uses

During flowering, the plant is an autumn nectar source, though other plants should be used instead because of the seed problems.

## Control

* Mowing: This plant can be controlled easily by regular mowing, but can be allowed to grow during the summer as competition for other weeds and as a green manure. It should be pulled or cut as soon as it begins to flower, to avoid re-seeding.
* Pulling: Pulls easily
* Disposal: Materials are safe to compost so long as well-covered and if pulled before seeds are set.

## References

* Missouri Plants: Bidens frondosa
* Photographs from Bioimages
# Horticulture/Biocontrols for Plant Pathogens

Biocontrols for plant pathogens include organism that consume, parasitize, or are antagonistic to the pathogenic organisms.
Biocontrols that consume pathogens are generally soil organisms that use the pathogen as a nutrient source.
Parasites include fungi and bacteria that are pathogens of the pathogen.
Antagonistic organisms inhibit the pathogen by interfering with their biology.
This page is a stub entry in Horticulture. Please see the Manual of Style for guidelines on how to expand it.
# Horticulture/Beta

Beets :
| Genus: | Beta |
| Family: | Amaranthaceae |
| Pollination: | Insects |
Beets are members of the genus Beta, several of which are grown in the garden as ornamentals and food crops.

## Pests and diseases

Wilt and Blight:
* Phytophthora capsici
Damping Off
Leaf Spots
Beet Curly Top Virus
Aphids
* Bean Aphid: Aphis fabae
* Green Peach Aphid: Myzus persicae
* Sugarbeet Root Aphid: Pemphigus populivenae
Hoppers
* Beet Leafhopper: Eutettix tenellus
* Leafhopper: Eutettix strobi
Maggots
* American Serpentine Leafminer: Liriomyza trifolii
* Beet Leafminer: Pegomya betae
* Spinach Leafminer: Pegomya hyoscyami
* Seedcorn Maggot: Delia platura
* Sugarbeet Root Maggot: Tetanops myopaeformis
Beetles
* Banded Cucumber Beetle: Diabrotica balteata
* Redheaded Flea Beetle: Systena frontalis
* Hop Flea Beetle: Psyllioides punctata
* Spinach Flea Beetle: Disonycha xanthomelas
* Rose Chafer: Macrodactylus subspinosus
Caterpillars
* Beet Webworm: Loxostege stricticalis
* Beet Armyworm: Spodoptera exigua
* Cabbage Looper: Trichoplusia ni
Nutrient:
* Boron Deficiency

## References

* Staff of the L. H. Bailey Hortorium (1976). Hortus Third: A Concise Dictionary of Plants Cultivated in the United States and Canada. Cornell University Press. p. 160.
* Cranshaw, Whitney (2004). Garden Insects of North America: The Ultimate Guide to Backyard Bugs. Princeton University Press. p. 582.
* Pippa Greenwood, Andrew Halstead, A.R. Chase, Daniel Gilrein (2000). American Horticultural Society Pests & Diseases: The Complete Guide to Preventing, Identifying, and Treating Plant Problems (First Edition ed.). Dorling Kindersley (DK) Publishing, inc. p. 202. {{cite book}}: |edition= has extra text (help)CS1 maint: multiple names: authors list (link)
# Horticulture/Blights

Blight refers to a specific symptom that can be expressed by plants in response to infection by a plant pathogenic organism. It is simply a rapid and complete chlorosis, browning, then death of plant tissues such as leaves, branches, twigs, or floral organs. Accordingly, many diseases that primarily exhibit this symptom are called blights. Several notable examples are:
* Late blight of potato, caused by the water mold Phytophthora infestans (Mont.) de Bary, the disease which led to the Irish Potato famine
* Southern corn leaf blight, caused by the fungus Cochliobolus heterostrophus (Drechs.) Drechs, anamorph Bipolaris maydis (Nisikado & Miyake) Shoemaker, incited a severe loss of corn in the United States in 1970.
* Chestnut blight, caused by the fungus Cryphonectria parasitica'' (Murrill) Barr, has nearly completely eradicated mature American chestnuts in North America.
* Fireblight, caused by the bacterium Erwinia amylovora (Burrill) Winslow et al., is the most severe disease of pear and also is found in apple and raspberry, among others.
* Bacterial leaf blight of rice, caused by the bacterium Xanthomonas oryzae (Uyeda & Ishiyama) Dowson.
* Early blight of potato and tomato, caused by species of the ubiquitous fungal genus Alternaria
* Rubber leaf blight
On leaf tissue, symptoms of blight are characterized by the initial appearance of lesions which rapidly engulf surrounding tissue. However, lesions of diseases that cause leaf spots may, in advanced stages, expand to kill entire areas of leaf tissue and thus exhibit blight symptoms.

## References

* ↑ Agrios, George N. Plant Pathology. 5th ed. Burlington, MA: Elsevier Academic Press, 2005.
* ↑ Partridge, J.E. "Southern Corn Leaf Blight." 2003. 8 August 2006. http://nu-distance.unl.edu/homer/disease/agron/corn/CoSCLB.html
* ↑ Oda, M., Sekizawa, Y., and Watanabe, T. 1966. "Phenazines as Disinfectants Against Bacterial Leaf Blight of the Rice Plant." Applied Microbiology 14(3):365-367.
# Horticulture/Biocontrols for Weeds

For some weeds, particularly invasive species, biocontrols have been selected and developed as a form of passive control in natural areas. While they are rarely used in garden situations, they are sometimes employed in managing meadows or woodlands. Most weed biocontrols are insects, though certain fungi are also used for some cases.
Biocontrols are much more commonly used for management of pest animals and microorganisms.
This page is a stub entry in Horticulture. Please see the Manual of Style for guidelines on how to expand it.
# Horticulture/Book Development Strategies

This is an outline/stub...:

## Linked Web

* Special:Wantedpages - as pages are created, redlinks are also created.
** For example, each page about a genus of plants has links to the pests and diseases affecting plants in that genera. As several genera which share some of the same pests and diseases are created, the "wanted" pest and disease pages move up in the Wantedpages list.
** When the pest or disease page is created, it will conversely have a list of links to the genera it affects, thus moving the genera pages up in the wantedpages list.

## User Participation

* "My Garden" pages (helps steer wantedpages)
** For example, contributors could make lists of the plants or other features found in their own gardens (should be done in userspace).
* Userboxes
** On wikibooks, for fun
** Possibly on wikipedia/wikiversity as well, to attract outside contributors.
* Wikiprojects on Wikipedia and elsewhere
* Web forums
* Universities and vocational schools
* Agricultural extension services

## Illustration
### Plants

* Images showing all aspects
* Images of garden use (combinations, etc.)

### Pest/Disease

* Images showing all aspects
* Images showing damage

### Techniques

* Images for step-by-step

## Learning Materials

* Plant identification on Wikiversity
* Similar for pests, diseases, beneficial organisms
* Bloom Clock on wikiversity, as content development.
# Final Fantasy X/Shops and Merchants
## Besaid Village
### Items

| Name | Gil |
| Potion | 50 |
| Phoenix Down | 100 |
| Antidote | 50 |

## Kilika Island
### Weapons

| Name | Gil |
| Hunter's Sword | 250 |
| Rod of Wisdom | 250 |
| Scout | 250 |
| Cactuar Scope | 250 |
| Hunter's Spear | 375 |
| Seeker's Shield | 150 |
| Seeker's Armguard | 150 |
| Seeker's Bangle | 150 |
| Seeker's Armlet | 150 |

## Luca
### Weapons

| Name | Gil |
| Warrior's Sword | 150 |
| Enchanted Rod | 150 |
| Power Ball | 150 |
| Magical Mog | 150 |
| Halberd | 225 |
| Shimmering Blade | 225 |
| Metal Shield | 250 |
| Metal Ring | 250 |
| Metal Armguard | 250 |
| Metal Bangle | 250 |
| Metal Armlet | 250 |

### Items

| Name | Gil |
| Potion | 50 |
| Phoenix Down | 100 |
| Antidote | 50 |
| Eye Drops | 50 |
| Echo Screen | 50 |

## Djose Temple (Inn)
### Weapons

| Name | Gil |
| Fencing Saber | 550 |
| Rune Rod | 550 |
| Hyper Ball | 550 |
| Magical Mog | 550 |
| Halberd | 825 |
| Shimmering Blade | 825 |
| Metal Shield | 550 |
| Metal Ring | 550 |
| Metal Armguard | 550 |
| Metal Bangle | 550 |
| Metal Armlet | 550 |
| Metal Bracer | 550 |

### Items

| Name | Gil |
| Potion | 50 |
| Phoenix Down | 100 |
| Antidote | 50 |
| Eye Drops | 50 |
| Echo Screen | 50 |
| Soft | 50 |

## Moonflow - South Wharf (Women near docks)
### Weapons

| Name | Gil |
| Bright Shield | 1968 |
| Serum Ring | 1781 |
| Danger Armguard | 1968 |
| Echo Bangle | 1968 |
| Soft Armlet | 3281 |
| Blue Bracer | 3843 |

### Items

| Name | Gil |
| Potion | 62 |
| Phoenix Down | 125 |
| Antidote | 62 |
| Eye Drops | 62 |
| Echo Screen | 62 |
| Soft | 62 |

## Via Purifico (Chest)
### Items

| Name | Gil |
| Potion | 50 |
| Hi-Potion | 500 |
| Phoenix Down | 100 |
| Antidote | 50 |
| Eye Drops | 50 |
| Echo Screen | 50 |
| Soft | 50 |
| Power Distiller | 100 |
| Mana Distiller | 100 |
| Speed Distiller | 100 |
| Ability Distiller | 100 |
# Final Fantasy X/Walkthrough/We called it Sin

When the game opens, one thing that you have to do before you can continue on to the second screen where you control your character, is talk to the 2 girls that are together, and the 3 boys that are together (using X). This has confused many people, where they don't know what to do. By talking with them, you will initiate 2 different cutscenes, one with each group of people, and in doing so you can name your character (default Tidus) and move on to the next screen.