# A-level Applied Science/Synthesising Organic Compounds/Organic chemicals
## Organic compounds and functional groups

The chemistry of carbon is almost entirely due to covalent bonding. Almost without limit, carbon can form four covalent bonds with a wide range of non-metallic elements. Carbon is able to form long chains of atoms to form quite stable molecules. The chains may be branched or form loops. Many other atoms will form stable bonds to carbon. Carbon can also form multiple bonds e.g. a carbon atom can form a triple bond to another carbon atom, or a nitrogen atom. Here are some examples of organic compounds. For each element, carbon, hydrogen, nitrogen, count how many covalent bonds the element forms. For each element, does the number of bonds change?
octane
butanamide
aspirin
* Element
* Carbon
* Hydrogen
* Oxygen
* Nitrogen
Because the bonding of each element is so regular, it is common to write the structures without showing every atom and bond:
Draw the full structures (showing all atoms and bonds) of these molecules:
CH$_3$CH$_2$CH$_2$CH$_2$CH$_3$ pentane
trans-3-methylhex-3-ene

### Aliphatic compounds

‘Aliphatic’ organic compounds are based on simple chains of carbon atoms. Other organic compounds are based around the ring structure of benzene and are known as ‘aromatic’.
Classify these compounds as aromatic or aliphatic:
Pentane Butanamide Aspirin
The naming and chemistry of aromatic compounds is not covered in these notes.
Naming aliphatic compounds is fairly simple. The name is based on the longest single chain of carbon atoms:
| Methane | CH$_4$ |
| Ethane | CH$_3$CH$_3$ |
| Propane | CH$_3$CH$_2$CH$_3$ |
| Butane | CH$_3$CH$_2$CH$_2$CH$_3$ |
| Pentane | CH$_3$CH$_2$CH$_2$CH$_2$CH$_3$ |
| Hexane | CH$_3$CH$_2$CH$_2$CH$_2$CH$_2$CH$_3$ |
| Heptane | CH$_3$CH$_2$CH$_2$CH$_2$CH$_2$CH$_2$CH$_3$ |
| Octane | CH$_3$CH$_2$CH$_2$CH$_2$CH$_2$CH$_2$CH$_2$CH$_3$ |
These are simple ‘alkane’ compounds. Some other patterns of atoms are seen over and over again. These are called ‘functional groups’ and each has characteristic chemistry. They are named by attaching a suffix or prefix to the name of the relevant alkane e.g. ethanol (ethane + -ol) is an alcohol with two carbon atoms, butanamide (butane + -amide) is an amide with four carbons. Complete the following table:
* Functional group
* Alkene
* Alcohol
* Amine
* Carboxylic acid
* Primary amide
* Ester
* Secondary amide
* Aldehyde
* Ketone
Structural formulae and three-dimensional shapes. The basic shape of organic molecules is based on the tetrahedron and the equilateral triangle. Use models (either on the computer or the plastic kits available in class) to examine and draw the following shapes: Carbon with just single bonds: e.g. CH$_4$
Carbon with one double bond: e.g. CH$_2$CH$_2$
Nitrogen and oxygen are similar, but without all four bonds: Compare:
CH$_3$CH$_3$ CH$_3$OH CH$_3$NH$_2$
CH$_2$CH$_2$ CH$_2$O

## Isomers

There are two molecules with the formula C$_4$H$_{10}$. What are their structures? What are their names?
These molecules are isomers: different compounds with the same formula. Because the bonding is different in the two C$_4$H$_{10}$ isomers, they are called ‘structural isomers’. Note that to make one isomer into another, you need to break at least one bond. There are three structural isomers of C$_3$H$_8$O. Try to draw and name them:
Numbers are included in the name when the functional group could be attached more than one carbon atom. There are six isomers with the formula C$_4$H$_8$. How many can you draw? How many can you name?

## Conformations

Using models, notice how a single bond can easily rotate. Double bonds will not rotate unless broken. Because you need to break the double bond to rotate it, there are two isomers of but-2-ene:
The bonding is the same in these two molecules, so they are not ‘structural isomers’. They are ‘stereoisomers’. Draw the stereoisomers of these compounds and name them. If there are no stereoisomers then say so. Propen-1-ol
Propen-2-ol
Pent-2-ene