# List of single cell omics methods

A list of more than 100 different single cell sequencing (omics) methods have been published. The large majority of methods are paired with short-read sequencing technologies, although some of them are compatible with long read sequencing.

## List

| Method | Sequencing Mode | Early Estimate | Late Estimate |
| Tang method | Short Reads | 2008 | 2009 |
| CyTOF | Short Reads | 2011 | 2012 |
| STRT-seq / C1 | Short Reads | 2011 | 2012 |
| SMART-seq | Short Reads | 2012 | 2013 |
| CEL-seq | Short Reads | 2012 | 2013 |
| Quartz-Seq | Short Reads | 2012 | 2013 |
| PMA / SMA | Short Reads | 2012 | 2013 |
| scBS-seq | Short Reads | 2013 | 2014 |
| AbPair | Short Reads | 2014 | 2014 |
| MARS-seq | Short Reads | 2014 | 2015 |
| DR-seq | Short Reads | 2014 | 2015 |
| G&T-Seq | Short Reads | 2014 | 2015 |
| SCTG | Short Reads | 2014 | 2015 |
| SIDR-seq | Short Reads | 2014 | 2015 |
| sci-ATAC-seq | Short Reads | 2014 | 2015 |
| Hi-SCL | Short Reads | 2015 | 2015 |
| SUPeR-seq | Short Reads | 2015 | 2015 |
| Drop-Chip | Short Reads | 2015 | 2015 |
| CytoSeq | Short Reads | 2015 | 2016 |
| inDrop | Short Reads | 2015 | 2016 |
| sc-GEM | Short Reads | 2015 | 2016 |
| scTrio-seq | Short Reads | 2015 | 2016 |
| scM&T-seq | Short Reads | 2015 | 2016 |
| PLAYR | Short Reads | 2015 | 2016 |
| Genshaft-et-al-2016 | Short Reads | 2015 | 2016 |
| Darmanis-et-al-2016 | Short Reads | 2015 | 2016 |
| CRISP-seq | Short Reads | 2015 | 2016 |
| scGESTALT | Short Reads | 2015 | 2016 |
| CEL-Seq2 / C1 | Short Reads | 2015 | 2016 |
| STRT-seq-2i | Short Reads | 2016 | 2017 |
| RNAseq @10xgenomics | Short Reads | 2016 | 2017 |
| RNAseq / Gene Expression @nanostringtech | Short Reads | 2016 | 2017 |
| sc Targeted Gene Expression @fluidigm | Short Reads | 2016 | 2017 |
| scTCR Wafergen | Short Reads | 2016 | 2017 |
| CROP-seq | Short Reads | 2016 | 2017 |
| SiC-seq | Short Reads | 2016 | 2017 |
| mcSCRB-seq | Short Reads | 2016 | 2017 |
| Patch-seq | Short Reads | 2016 | 2017 |
| Geo-seq | Short Reads | 2016 | 2017 |
| scNOMe-seq | Short Reads | 2016 | 2017 |
| scCOOL-seq | Short Reads | 2016 | 2017 |
| CUT&Run | Short Reads | 2016 | 2017 |
| MATQ-seq | Short Reads | 2016 | 2017 |
| Quartz-Seq2 | Short Reads | 2017 | 2018 |
| Seq-Well | Short Reads | 2017 | 2018 |
| DroNC-Seq | Short Reads | 2017 | 2018 |
| sci-RNA-seq | Short Reads | 2017 | 2018 |
| scATAC @10xgenomics | Short Reads | 2017 | 2018 |
| scVDJ @10xgenomics | Short Reads | 2017 | 2018 |
| scNMT triple omics | Short Reads | 2017 | 2018 |
| SPLIT-seq Parse Biosciences | Short Reads | 2017 | 2018 |
| CITE-Seq | Short Reads | 2017 | 2018 |
| scMNase-seq | Short Reads | 2017 | 2018 |
| Chaligne-et-al-2018 | Short Reads | 2017 | 2018 |
| LINNAEUS | Short Reads | 2017 | 2018 |
| TracerSeq | Short Reads | 2017 | 2018 |
| CellTag | Short Reads | 2017 | 2018 |
| ScarTrace | Short Reads | 2017 | 2018 |
| scRNA-Seq Dolomite Bio | Short Reads | 2017 | 2018 |
| Trac-looping | Short Reads | 2017 | 2018 |
| Perturb-ATAC | Short Reads | 2018 | 2019 |
| scMethylation | Short Reads | 2018 | 2019 |
| scHiC | Short Reads | 2018 | 2019 |
| Multiplex Droplet scRNAseq | Short Reads | 2018 | 2019 |
| sci-CAR | Short Reads | 2018 | 2019 |
| C1 CAGE single cell | Short Reads | 2018 | 2019 |
| sc paired microRNA-mRNA | Short Reads | 2018 | 2019 |
| scCAT-seq | Short Reads | 2018 | 2019 |
| REAP-seq @fluidigm | Short Reads | 2018 | 2019 |
| scCC | Short Reads | 2018 | 2019 |
| yscRNA-SEQ | Short Reads | 2018 | 2019 |
| TARGET-seq | Short Reads | 2018 | 2019 |
| MULTI-seq | Short Reads | 2018 | 2019 |
| snRNA-seq | Short Reads | 2018 | 2019 |
| sci-RNA-seq3 | Short Reads | 2018 | 2019 |
| BRIF-seq | Short Reads | 2018 | 2019 |
| Drop-seq Dolomite Bio | Short Reads | 2018 | 2019 |
| Slide-seq | Short Reads | 2018 | 2019 |
| CUT&Tag | Short Reads | 2018 | 2019 |
| CellTagging | Short Reads | 2018 | 2019 |
| DART-Seq | Short Reads | 2018 | 2019 |
| scDamID&T | Short Reads | 2018 | 2019 |
| ACT-seq | Short Reads | 2018 | 2019 |
| Sci-Hi-C | Short Reads | 2018 | 2019 |
| Slide-seq | Short Reads | 2018 | 2019 |
| Simplified-Drop-seq | Short Reads | 2018 | 2019 |
| scChIC-seq | Short Reads | 2018 | 2019 |
| Dip-C | Short Reads | 2018 | 2019 |
| CoBATCH | Short Reads | 2018 | 2019 |
| Convert-seq | Short Reads | 2018 | 2019 |
| Droplet-based scATAC-seq | Short Reads | 2018 | 2019 |
| ECCITE-seq | Short Reads | 2018 | 2019 |
| dsciATAC-seq | Short Reads | 2018 | 2019 |
| CLEVER-seq | Short Reads | 2018 | 2019 |
| scISOr-Seq | Short Reads | 2018 | 2019 |
| MARS-seq2.0 | Short Reads | 2018 | 2019 |
| nano-NOMe | Long Reads | 2018 | 2019 |
| MeSMLR-seq | Long Reads | 2018 | 2019 |
| SMAC-seq | Long Reads | 2018 | 2019 |
| MoonTag/SunTag | Short Reads | 2018 | 2019 |
| SCoPE2 | Short Reads | 2018 | 2019 |
| sci-fate | Short Reads | 2018 | 2019 |
| μDamID | Short Reads | 2018 | 2019 |
| Methyl-HiC | Short Reads | 2018 | 2019 |
| RAGE-seq | Long Reads | 2018 | 2019 |
| Paired-Seq | Short Reads | 2018 | 2019 |
| Tn5Prime | Short Reads | 2018 | 2019 |
| NanoPARE | Short Reads | 2018 | 2019 |
| BART-Seq | Short Reads | 2018 | 2019 |
| scDam&T-seq | Short Reads | 2018 | 2019 |
| itChIP-seq | Short Reads | 2018 | 2019 |
| SNARE-seq | Short Reads | 2018 | 2019 |
| ASTAR-seq | Short Reads | 2018 | 2019 |
| sci-Plex | Short Reads | 2018 | 2019 |
| MIX-Seq | Short Reads | 2018 | 2019 |
| microSPLiT | Short Reads | 2018 | 2019 |
| PAIso-seq | Short Reads | 2018 | 2019 |
| FIN-Seq | Short Reads | 2018 | 2019 |
| LIBRA-seq | Short Reads | 2018 | 2019 |
| scifi-RNA-seq | Short Reads | 2018 | 2019 |
| plexDIA | Short Reads | 2021 | 2021 |
| MPX | Short Reads | 2023 | 2023 |