# List of sequenced animal genomes

This list of sequenced animal genomes contains animal species for which complete genome sequences have been assembled, annotated and published. Substantially complete draft genomes are included, but not partial genome sequences or organelle-only sequences. For all kingdoms, see the list of sequenced genomes.

## Porifera (Sponges)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
* Amphimedon queenslandica, a sponge (2009)
* Stylissa carteri (2016)
* Ephydatia muelleri (2020)
* Xestospongia testudinaria (2016)

## Ctenophora

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
* Mnemiopsis leidyi (Ctenophora), (order Lobata) (2012/2013)
* Hormiphora californensis (Ctenophora) (2021)
* Pleurobrachia bachei (Ctenophora) (2014)
* Bolinopsis microptera(Ctenophora) (2022)

## Placozoa

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Trichoplacidae | Trichoplax adhaerens | N/A | 105.63 Mbp | 11,304 | 2008 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 6 Mbp Contig N50: 204.2 Kbp 8.1x genome coverage |
| Hoilungidae | Hoilungia hongkongensis | TrispH2_1.0 | 94.88 Mbp | 12,225 | 2018 draft | BUSCO: Unknown Scaffold level assembly Scoffold N50: 376.3 Kbp Contig N50: 91.9 Kbp 80.0x genome coverage |

## Cnidaria

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
* Hydra vulgaris, (previously Hydra magnipapillata), a model hydrozoan (2010)
* Nematostella vectensis, a model sea anemone (starlet sea anemone) (2007)
* Aiptasia pallida, a sea anemone (2015)
* Renilla muelleri, an octocoral (2017, 2019)
* Stylophora pistillata, a coral (2017)
* Aurelia aurita, moon jellyfish (2019)
* Clytia hemisphaerica, Hydrozoan jellyfish (2019)
* Myxobolus honghuensis (2022)
* Nemopilema nomurai, Nomura jellyfish (2019)
* Rhopilema esculentum, Flame jellyfish (2020)
* Cassiopea xamachana (Scyphozoa) (2019)
* Alatina alata (Cubozoa) (2019)
* Calvadosia cruxmelitensis (Staurozoa) (2019)
* Dendronephthya gigantea, an octocoral (2019)
* Acropora acuminata (2020)
* Acropora awi (2020)
* Acropora cytherea, Table coral (2020)
* Acropora digitifera, a coral (2011)
* Acropora echinata (2020)
* Acropora florida, branching staghorn coral(2020)
* Acropora gemmifera (2021)
* Acropora hyacinthus, Brush coral (2020)
* Acropora intermedia, Noble Staghorn Coral (2020)
* Acropora microphthalma (2020)
* Acropora muricata, Staghorn coral (2020)
* Acropora nasta, branching staghorn coral (2020)
* Acropora selago, Green Selago Acropora (2020)
* Acropora tenuis, Purple Tipped Acropora (2020)
* Acropora yongei ,Yonge's staghorn coral (2020)
* Astreopora myriophthalma, Porous star coral (2020)
* Lophelia pertusa, Deepwater White Coral (2023)
* Montipora cactus (2020)
* Montipora capitata, Rice coral (2022)
* Montipora efflorescens, Velvet coral (2020)
* Orbicella faveolata, mountainous star coral (2016)
* Pocillopora acuta, Hosoeda Hanayasai coral (2022)
* Pocillopora damicornis, cauliflower coral (2018)
* Pocillopora meandrina, Cauliflower coral (2022)
* Porites astreoides, Mustard hill coral (2022)
* Porites compressa, Finger coral (2022)

## Hemichordata
### Order Enteropneusta (Acorn Worms)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Ptychoderidae | Ptychodera flava | AS_Pfla_20210202 | 1.16 Gbp | 38,920 | 2024 draft | BUSCO: 91.1% single copy Chromosome scale, aligned to 22 pseudochromosomes (22 somatic), no mitochondrial chromosome Scaffold N50: 44.0 Mbp Contig N50: 6.5 Mbp 60.0x genome coverage |
| Spengelidae | Glandiceps talaboti | keGlaTala1.1 | 590.49 Mbp | N/A | 2024 draft | BUSCO: Unknown Chromosome scale, aligned to 24 pseudochromosomes (23 somatic + mitochondrial) Scaffold N50: 21.5 Mbp Contig N50: 6.1 Mbp 62.0x genome coverage |

## Echinodermata

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
* Acanthaster planci, starfish (2014)
* Apostichopus japonicus, sea cucumber (2017)
* Arbacia lixula, black sea urchin (2024)
* Astropecten irregularis, sand sea star (2024)
* Australostichopus mollis, Australian sea cucumber (2016)
* Chiridota hydrothermica, deep sea cucumber (2024)
* Diadema setosum, Long-spined sea urchin (2024)
* Echinometra lucunter, rock boring urchin (2023)
* Ophionereis fasciata, mottled brittlestar (2016)
* Patiriella regularis, the New Zealand common cushion star (2016)
* Plazaster borealis, Octopus starfish (2022)
* Strongylocentrotus purpuratus, a sea urchin and model deuterostome (2006)

## Cephalocordata (Lancelets)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Branchiostomidae | Asymmetron lucayanum | Asyluc0.1 | 460.59 Mbp | N/A | 2016 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 3.2 Kbp Contig N50: 2.0 Kbp 75.0x genome coverage |
| Branchiostomidae | Branchiostoma belcheri (Belcher's lancelet) | CUHK_Bbel | 478.32 Mbp | 44,747 | 2022 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 4.2 Mbp Contig N50: 2.5 Mbp 192.0x genome coverage |
| Branchiostomidae | Branchiostoma floridae (Florida lancelet) | Bfl_VNyyK | 513.45 Mbp | 29,857 | 2020 draft | BUSCO: 96.0% single copy Chromosome scale, aligned to 20 pseudochromosomes (19 somatic + mitochondrial) Scaffold N50: 25.4 Mbp Contig N50: 50.4 Kbp 10.3x genome coverage |
| Branchiostomidae | Branchiostoma lanceolatum (European lancelet) | klBraLanc5.hap2 | 458.27 Mbp | 29,133 | 2024 draft | BUSCO: 98.0% single copy Chromosome scale, aligned to 20 pseudochromosomes (19 somatic + mitochondrial) Scaffold N50: 22.6 Mbp Contig N50: 11.2 Mbp 87.2x genome coverage |

## Tunicates
### Appendicularia
#### Order Copelata (Larvaceans)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
Oikopleura dioica, a larvacean (2001).

### Acopa
#### Order Stolidobranchia

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

#### Thaliacea
##### Order Pyrosomida (Pyrosomes)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

##### Order Salpida (Salps)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

##### Order Doliolida

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

#### Enterogona
##### Order Phlebobranchia

* Ciona intestinalis, a tunicate (2002)
* Ciona savignyi, a tunicate (2007)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

##### Order Aplousobranchia

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Vertebrates
### Cartilaginous fish
#### Holocephali
##### Order Chimaeriformes (Chimeras)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Callorhinchidae | Callorhinchus milii (Australian ghostshark) | IMCB_Cmil_1.0 | 0.99 Gbp | 21,550 | 2021 draft | BUSCO: 91.4% single copy Scaffold level assembly with 1 pseudochromosome (mitochondrial) Scaffold N50: 69.3 Mbp Contig N50: 1.6 Mbp 68.8x genome coverage |
| Chimaeridae | Hydrolagus affinis (Small-eyed rabbitfish) | UP_Haf | 1.11 Gbp | N/A | 2020 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 19.5 Kbp Contig N50: 15.9 Kbp 35.0x genome coverage |
| Chimaeridae | Hydrolagus colliei (Spotted ratfish) | sHydCol1.hap2 | 1.00 Gbp | N/A | 2024 draft | BUSCO: Unknown Chromosome scale, aligned to 40 pseudochromosomes (40 somatic), no mitochondrial chromosome Scaffold N50: 42.6 Mbp Contig N50: 1.1 Mbp 64.0x genome coverage |

#### Selachimorpha (True Sharks)

* Superorder Galeomorphii
** Order Carcharhiniformes (Ground Sharks)
*** Scyliorhinus torazame, Cloudy catshark (2018)
** Order Lamniformes (Mackerel Sharks)
*** Carcharodon carcharias, Great white shark (2018)
** Order Orectolobiformes (Carpet Sharks)
*** Chiloscyllium plagiosum, Whitespotted bamboo shark (2020)
*** Chiloscyllium punctatum, Brownbanded bamboo shark (2018)
*** Rhincodon typus, Whale shark (2017)

#### Batomorphi (Rays)

* Order Myliobatiformes
** Potamotrygon leopoldi, Xingu river ray (2023 draft)
* Order Rajiformes
** Leucoraja erinacea, Little skate (2023)

### Ray-Finned Fish
#### Cladistia

* Order Polypteriformes
** Polypterus senegalus, Senegal bichir, (2021)

#### Chondrostei

* Order Acipenseriformes
** Polyodon spathula, American paddlefish, (2021 draft)

#### Holostei

* Order Amiiformes
** Amia calva, Bowfin, (2021 draft)
* Order Lepisosteiformes
** Atractosteus spatula, Aligator gar, (2024)
** Lepisosteus oculatus, Spotted gar

#### Teleostei

* Order Anabantiformes
** Betta splendens, Siamese fighting fish (2018)
** Helostoma temminkii, Kissing gourami (2020)
* Order Anguilliformes
** Anguilla anguilla, European Eel (2012)
** Anguilla japonica, Japanese Eel (2022)
* Order Beloniformes
** Oryzias latipes, medaka (2007)
* Order Callionymiformes
** Callionymus lyra, common dragonet (2020)
* Order Carangiformes
** Caranx ignobilis, Giant trevally (2022)
** Caranx melampygus, Bluefin trevally (2021)
** Pseudocaranx georgianus, New Zealand trevally (2021)
* Order Centrarchiformes
** Oplegnathus fasciatus, barred knifejaw (2019)
* Order Characiformes
** Astyanax jordani, Mexican cavefish (2014)
** Astyanax mexicanus, Mexican tetra (2021)
** Colossoma macropomum, Tambaqui (2021)
** Hasemania nana, Silvertip tetra (2013)
** Hyphessobrycon heterorhabdus, Flag tetra (2023)
** Petitella bleheri, Firehead tetra (2015)
** Psalidodon paranae, (2016)
* Order Cichliformes
** Oreochromis niloticus, Nile tilapia (2019)
** Metriaclima zeb, Lake Malawi cichlid (2019)
* Order Clupeiformes
** Clupea harengus, Atlantic herring (2020)
** Coilia nasus, Japanese grenadier anchovy (2020)
** Sardina pilchardus, European pilchard (2019)
* Order Cypriniformes
** Anabarilius grahami, Kanglang fish (2018)
** Danio rerio, zebrafish (2007)
** Leuciscus baicalensis, Siberian dace (2014)
** Megalobrama amblycephala, Wuchang bream (2017)
** Metzia formosae, (2015)
** Opsarius caudiocellatus, (2022)
** Oxygymnocypris stewartii, (2019)
** Pseudobrama simoni (2020)
** Rhodeus ocellatus, Rosy bitterling (2020)
** Triplophysa bleekeri, Tibetan stone loach (2020)
* Order Cyprinodontiformes
** Fundulus catenatus, Northern studfish (2020)
** Fundulus olivaceus, Blackspotted topminnow (2020)
** Fundulus nottii, Bayou topminnow (2020)
** Fundulus xenicus, Diamond killifish (2020)
** Gambusia affinis, western mosquitofish (2020)
** Heterandria formosa, least killifish (2019)
** Micropoecilia picta, swamp guppy (2021)
** Xiphophorus maculatus, platyfish (2013)
** Nothobranchius furzeri, turquoise killifish (2015)
* Order Esociformes
** Esox lucius, northern pike (2014)
* Order Gadiformes
** Gadus macrocephalus, Pacific cod (2022)
** Gadus morhua, Atlantic cod (2011)
* Order Gasterosteiformes
** Gasterosteus aculeatus, three-spined stickleback (2006, 2012)
* Order Gobiiformes
** Oxyeleotris marmorata, marble goby (2020)
** Periophthalmus modestus, shuttles hoppfish or shuttles mudskipper (2022)
* Order Gymnotiformes
** Electrophorus electricus, electric eel (2014)
* Order Lampriformes
** Lampris incognitus, Smalleye Pacific Opah (2021)
* Order Osmeriformes
** Neosalanx tangkahkeii, Chinese icefish (2015)
** Protosalanx hyalocranius, clearhead icefish (2017)
* Order Osteoglossiformes
** Heterotis niloticus, African arowana (2020)
** Paramormyrops kingsleyae, mormyrid electric fish (2017)
** Scleropages formosus, Asian arowana (2016)
* Order Perciformes
** Centropyge bicolor, bicolor angelfish (2021)
** Chaetodon trifasciatus, melon butterflyfish (2020)
** Channa argus, northern snakehead (2017)
** Channa maculata, blotched snakehead (2021)
** Chelmon rostratus, copperband butterflyfish (2020)
** Dissostichus mawsoni, Antarctic toothfish (2019)
** Eleginops maclovinus, Patagonian robalo (2019)
** Epinephelus moara, kelp grouper (2021)
** Larimichthys crocea, large yellow croaker (2014)
** Lutjanus campechanus, Northern red snapper (2020)
** Naso vlamingii, bignose unicornfish (2020)
** Parachaenichthys charcoti, Antarctic dragonfish (2017)
** Seriola dumerili, Greater amberjack (2017)
** Sillago sinica, chinese sillago (2018)
** Siniperca knerii, Big-Eye Mandarin Fish (2020)
** Sparus aurata, gilt-head bream (2018)
* Order Salmoniformes
** Salmo salar, Atlantic salmon (2016)
** Oncorhynchus mykiss, rainbow trout (2014)
** Oncorhynchus tshawytscha, Chinook salmon (2018)
** Salvelinus namaycush, Lake Trout (2021)
* Order Scorpaeniformes
** Sebastes schlegelii, Black rockfish (2018)
* Order Siluriformes
** Clarias batrachus, walking catfish (2018)
** Ictalurus punctatus, channel catfish (2016)
** Pangasianodon hypophthalmus, Iridescent shark catfish (2021)
** Silurus glanis, Wels catfish (2020)
* Order Spariformes
** Datnioides pulcher, Siamese tigerfish (2020)
** Datnioides undecimradiatus, Mekong tiger perch (2020)
* Order Syngnathiformes
** Syngnathus scovelli, Gulf pipefish (2016, 2023)
* Order Tetraodontiformes
** Diodon holocanthus, Long-spine porcupinefish (2020)
** Mola mola, ocean sunfish (2016)
** Takifugu rubripes, a puffer fish (2002)
** Tetraodon nigroviridis, a puffer fish (2004)

### Lobe-Finned Fish (Excluding Tetrapods)
#### Coelacanths (Actinistia)
##### Order Coelacanthiformes

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Latimeriidae | Latimeria chalumnae (West Indian Ocean coelacanth) | fLatCha1.pri | 2.95 Gbp | 28,938 | 2024 draft | BUSCO: 97.4% single copy Chromosome scale, alligned to 30 pseudochromosomes (30 somatic), no mitochondrial chromosome Scaffold N50: 188.1 Mbp Contig N50: 42.1 Mbp 41.9x genome coverage |

#### Lungfish (Dipnoi)
##### Order Ceratodontiformes

| Family | Species | Assembly Name | Genome Size | Reference | Assembly status |
| Lepidosirenidae | Lepidosiren paradoxa (South American lungfish) | N/A | 87.22 Gbp | 2024 draft | BUSCO: Chromosome scale, alligned to 50 pseudochromosomes (49 somatic + mitochondrial), there's technically only 20 pseudochromosomes as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19 were split Scaffold N50: 2.0 Gbp Contig N50: 11.6 Mbp 23.0x genome coverage |
| Protopteridae | Protopterus annectens (West-African lungfish) | N/A | 40.52 Gbp | 2024 draft | BUSCO: Chromosome scale, alligned to 28 pseudochromosomes (27 somatic + mitochondrial), there's technically only 18 pseudochromosomes as 1, 2, 3, 4, 5, 6, 7, and 8 were split Scaffold N50: 2.0 Gbp Contig N50: 3.4 Mbp 42.0x genome coverage |
| Neoceratodontidae | Neoceratodus forsteri (Australian lungfish) | neoFor_v3.1 | 34.56 Gbp | 2023 draft | BUSCO: Chromosome scale, alligned to 21 pseudochromosomes (21 somatic), there's technically only 14 pseudochromosomes as 1,2,3 and 4 were split, no mitochondrial chromosome Scaffold N50: 1.5 Mbp Contig N50: 1.4 Mbp 30.0x genome coverage |

### Amphibians
#### Frogs (Anura)

* Taudactylus pleione, Kroombit tinker frog (2023)
* Leptobrachium leishanense, Leishan Moustache toad (2019)
* Limnodynastes dumerilii dumerilii, Eastern banjo frog (2020)
* Nanorana parkeri, High Himalaya frog (2015)
* Oophaga pumilio, Strawberry poison-dart frog (2018)
* Platyplectrum ornatum, Ornate burrowing frog (2021)
* Pyxicephalus adspersus, African bullfrog (2018)
* Rana [Lithobates] catesbeiana, North American bullfrog (2017)
* Rana kukunoris, Plateau brown frog (2023)
* Rhinella marina, Cane toad (2018)
* Vibrissaphora ailaonica, Moustache toad (2019)
* Xenopus tropicalis, western clawed frog (2010)

#### Salamanders (Urodela)

* Clade Salamandroidea
** Family Salamandridae
*** Pleurodeles waltl, Iberian ribbed newt, (2025)
** Family Ambystomatidae (Tiger Salamanders)
*** Ambystoma mexicanum, Axolotl (2018)

#### Caecillians

* Family Dermophiidae
** Geotrypetes seraphini, Gaboon caecillian, (2023)
* Family Siphonopidae
** Microcaecilia unicolor, a caecillian, (2023)

### Birds
#### Ratites (Palaeognathae)
##### Order Struthioniformes

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Struthionidae (Ostriches) | Struthio camelus (Common ostrich) | N/A | 1.45 Gbp | 23,381 | 2024 draft | BUSCO: 94.5% single copy Chromosome scale, aligned to 41 pseudochromosomes (39 somatic + W and Z), no mitochondrial chromosome Scaffold N50: 84.6 Mbp Contig N50: 28.8 Mbp |

##### Order Rheiformes (Rheas)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Rheidae | Rhea americana (Greater rhea) | rheAme1 | 1.16 Gbp | N/A | 2018 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 3.9 Mbp Contig N50: 88.8 Kbp |
| Rheidae | Rhea pennata (Lesser rhea) | bPtePen1.pri | 1.27 Gbp | 19,550 | 2023 draft | BUSCO: 98.6% single copy Chromosome scale, aligned to 41 pseudochromosomes (39 somatic + Z + mitochondrial), no W chromosome Scaffold N50: 82.5 Mbp Contig N50: 19.3 Mbp |

##### † Order Dinornithiformes (Moas)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Emeidae (Lesser Moas) | † Anomalopteryx didiformis (Little bush moa) | anoDid_nucDNA_orig | 1.19 Gbp | N/A | 2019 draft | BUSCO: 85.2% single copy, 72.2% complete single copy Scaffold level assemby Complete mitochondrial genome Scaffold N50: 3.4 Mbp Contig N50: 824 bp |

##### Order Tinamiformes (Tinamous)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Tinamidae | Tinaminae | Crypturellus boucardi (Slaty-breasted tinamou) | N/A | 1.45 Gbp | N/A | 2024 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 930 bp Contig N50: 920 bp |
| Tinamidae | Tinaminae | Crypturellus soui (Little tinamou) | N/A | 1.04 Gbp | N/A | 2023 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 2.9 Mbp Contig N50: 10.6 Kbp |
| Tinamidae | Tinaminae | Crypturellus tataupa (Tataupa tinamou) | N/A | 1.01 Gbp | N/A | 2023 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 3.1 Mbp Contig N50: 37.0 Kbp |
| Tinamidae | Tinaminae | Crypturellus undulatus (Undulated tinamou) | N/A | 1.02 Gbp | 15,484 | 2020 draft | BUSCO: Unknown (Somewhere in Supplementary Table 1) Scaffold level assembly Scaffold N50: 387.8 Kbp Contig N50: 99.5 Kbp |
| Tinamidae | Tinaminae | Tinamus guttatus (White-throated tinamou) | N/A | 1.05 Gbp | 16,984 | 2014 draft | BUSCO: 91.7% single copy Scaffold level assembly Scaffold N50: 246.3 Kbp Contig N50: 29.8 Kbp |
| Tinamidae | Tinaminae | Tinamus major (Great tinamou) | N/A | 1.00 Gbp | N/A | 2023 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 3.3 Mbp Contig N50: 26.6 Kbp |
| Tinamidae | Tinaminae | Nothocercus julius (Tawny-breasted tinamou) | N/A | 1.02 Gbp | 14,778 | 2020 draft | BUSCO: Unknown (Somewhere in Supplementary Table 1) Scaffold level assembly Scaffold N50: 4.1 Mbp Contog N50: 37.6 Kbp |
| Tinamidae | Tinaminae | Nothocercus nigrocapillus (Hooded tinamou) | N/A | 1.02 Gbp | 14,502 | 2020 draft | BUSCO: Unknown (Somewhere in Supplementary Table 1) Scaffold level assembly Scaffold N50: 2.6 Mbp Contig N50: 31.0 Kbp |
| Tinamidae | Nothurinae | Nothoprocta ornata (Ornate tinamou) | N/A | 0.98 Gbp | 14,967 | 2020 draft | BUSCO: Unknown (Somewhere in Supplementary Table 1) Scaffold level assembly Scaffold N50: 3.8 Mbp Contig N50: 47.3 Kbp |
| Tinamidae | Nothurinae | Nothoprocta pentlandii (Andean tinamou) | N/A | 0.98 Gbp | 14,572 | 2020 draft | BUSCO: Unknown (Somewhere in Supplementary Table 1) Scaffold level assembly Scaffold N50: 1.1 Mbp Contog N50: 45.2 Kbp |
| Tinamidae | Nothurinae | Nothoprocta perdicaria (Chilean tinamou) | notPer1 | 0.97 Gbp | 18,157 | 2023 draft | BUSCO: 98.1% single copy Scaffold level assembly Scaffold N50: 3.4 Mbp Contog N50: 95.6 Kbp |
| Tinamidae | Nothurinae | Rhynchotus rufescens (Red-winged tinamou) | N/A | 0.98 Gbp | N/A | 2023 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 16.1 Kbp Contig N50: 9.9 Kbp |
| Tinamidae | Nothurinae | Nothura maculosa (Spotted nothura) | N/A | 1.01 Gbp | N/A | 2023 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 2.5 Mbp Contig N50: 10.9 Kbp |
| Tinamidae | Nothurinae | Eudromia elegans (Elegant crested tinamou) | eudEle1 | 0.96 Gbp | N/A | 2018 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 3.3 Mbp Contig N50: 126.2 Kbp |

##### Order Apterygiformes (Kiwis)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Apterygidae | Apteryx haastii (Great spotted kiwi) | aptHaa1 | 1.22 Gbp | N/A | 2019 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 1.4 Mbp Contig N50: 120.1 Kbp |
| Apterygidae | Apteryx owenii (Little spotted kiwi) | aptOwe1 | 1.23 Gbp | N/A | 2019 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 1.6 Mbp Contig N50: 138.4 Kbp |
| Apterygidae | Apteryx mantelli (North island brown kiwi) | bAptMan1.hap1 | 1.50 Gbp | 21,410 | 2021 draft | BUSCO: 97.9% single copy Chromosome scale, alligned to 43 pseudochromosomes (42 somatic + Z), no W or mitochondrial chromosome Scaffold N50: 88.1 Mbp Contig N50: 19.8 Mbp |
| Apterygidae | Apteryx rowi (Okarito brown kiwi) | aptRow1 | 1.23 Gbp | N/A | 2019 draft | BUSCO: 97.8% single copy Scaffold level assembly Scaffold N50: 1.7 Mbp Contig N50: 129.4 Kbp |

##### Order Casuariiformes

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Dromaiidae (Emus) | Dromaius novaehollandiae (Emu) | bDroNov1.hap1 | 1.47 Gbp | 24,513 | 2024 draft | BUSCO: 94.2% single copy Chromosome scale, alligned to 41 pseudochromosomes (39 somatic + W and Z), no mitochondrial chromosome Scaffold N50: 77.9 Mbp Contig N50 24.2 Mbp |
| Casuaridae (Cassowaries) | Casuarius casuarius (Southern cassowary) | N/A | 1.20 Gbp | 15,110 | 2020 draft | BUSCO: Unknown Scaffold level assembly Scaffold N50: 5.7 Mbp Contig N50: 88.6 Kbp |

#### Fowl (Galloanserae)
##### Order Anseriformes (Waterfowl)

| Family | Subfamily | Species | Reference |
| Anatidae | Anserinae | Anser cygnoides (Swan goose) | 2024 |
| Anatidae | Anserinae | Anser indicus (Bar-headed goose) | 2022 |
| Anatidae | Anserinae | Cygnus atratus (Black swan) | 2023 |
| Anatidae | Anserinae | Cygnus olor (Mute swan) | 2023 |
| Anatidae | Anatinae | Aix galericulata (Mandarin duck) | 2022 |
| Anatidae | Anatinae | Anas platyrhynchos (Mallard duck) | 2024 |
| Anatidae | Anatinae | Aythya fuligula (Tufted duck) | 2021 |
| Anatidae | Anatinae | Cairina moschata (Muscovy duck) | 2022 |
| Anatidae | Anatinae | Netta rufina (Red-crested pochard) | 2024 |

##### Order Galliformes (Landfowl)

| Family | Subfamily | Species | Reference |
| Numididae (Guineafowl) | Numidinae | Numida meleagris (Helmeted guinea fowl) | 2019 |
| Phasianidae | Pavoninae | Alectoris magna (Przevalski's partridge) | 2023 |
| Phasianidae | Pavoninae | Coturnix japonica (Japanese quail) | 2020 |
| Phasianidae | Pavoninae | Gallus gallus (Chicken) | 2004 |
| Phasianidae | Pavoninae | Pavo cristatus (Indian peafowl) | 2018 |
| Phasianidae | Pavoninae | Pavo muticus (Green peafowl) | 2022 |
| Phasianidae | Phasianinae | Ithaginis cruentus (Blood pheasant) | 2020 |
| Phasianidae | Phasianinae | Lophophorus lhuysii (Chinese monal) | 2019 |
| Phasianidae | Phasianinae | Lophura nycthemera (Silver pheasant) | 2021 |
| Phasianidae | Phasianinae | Meleagris gallopavo domesticus (Domestic turkey) | 2011 |
| Phasianidae | Phasianinae | Phasianus colchicus (Common Pheasant) | 2019 |
| Phasianidae | Phasianinae | Syrmaticus mikado (Mikado pheasant) | 2018 |
| Phasianidae | Phasianinae | Tetrao tetrix (Black grouse) | 2014 |
| Phasianidae | Phasianinae | Tragopan temminckii (Temminck's tragopan) | 2023 |
| Phasianidae | Rollulinae | Arborophila rufipectus (Sichuan Partridge) | 2019 |

#### Neoaves
##### Mirandornithes
###### Order Phoenicopteriformes (Flamingos)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links | Assembly status |
| Phoenicopteridae | Phoenicopterus ruber ruber (American Flamingo) | N/A | 1.27 Gbp | N/A | N/A, draft | NCBI Database | |

###### Order Podicipediformes (Grebes)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links |
| Podicipedidae | Podiceps auritus (Horned grebe) | N/A | 1.40 Gbp | N/A | N/A, draft | NCBI Database |
| | Podiceps cristatus (Great crested grebe) | N/A | 1.13 Gbp | 13,553 | 2014 draft | NCBI Database |
| | Podiceps grisegena (Red-necked grebe) | N/A | 1.23 Gbp | N/A | N/A, draft | NCBI Database |
| | Podilymbus podiceps (Pied-billed grebe) | N/A | 1.20 Gbp | 15,688 | 2020 draft | NCBI Database |

##### Columbaves
###### Order Columbiformes

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Columba livia (Common Pigeon) | | | | 2014 draft | |

###### Order Mesitornithiformes (Mesites)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Mesitornis unicolor (Brown mesite) | | | | 2014 draft | |

###### Order Pterocliformes (Sandgrouse)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Pterocles gutturalis (Yellow-throated sang grouse) | | | | 2014 draft | |

###### Order Musophagiformes (Turacos)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Tauraco erythrolophus (Red-crested turaco) | | | | 2014 draft | |

###### Order Otidiformes (Bustards)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Otis tarda (Great bustard) | | | | 2023 | |

###### Order Cuculiformes (Cuckoos)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Cuculus canorus (Common Cuckoo) | | | | 2014 draft | |

##### Gruae
###### Order Opisthocomiformes

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Opisthocomidae | | Opisthocomus hoazin (Hoatzin) | | | | 2014 | |

###### Order Gruiformes

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Balearica regulorum gibbericeps (Grey-crowned crane) | | | | 2014 | |
| | | Chlamydotis macqueenii (Asian houbara) | | | | 2014 | |

###### Order Charadriiformes

| Species | Reference |
| Charadrius vociferus (Killdeer) | 2019 |
| Himantopus novaezelandiae (Kakī / Black stilt) | 2019 |
| Himantopus himantopus (Pied stilt) | 2019 |
| Recurvirostra avosetta (Pied avocet) | 2019 |

##### Strisores
###### Order Caprimulgiformes (Nightjars)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Antrostomus carolinensis (Chuck-will's widow) | | | | 2014 | |

###### Order Apodiformes

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Chaetura pelagica (Chimney swift) | | | | 2014 | |
| | | Calypte anna (Anna's hummingbird) | | | | 2014 | |

##### Phaethoquornithes

Order Phaethontiformes
| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Phaethon lepturus (White-tailed tropicbird) | | | | 2014 | |

###### Order Eurypygiformes

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links | Assembly status |
| Rhynochetidae | Rhynochetos jubatus (Kagu) | bRhyJub1.pri | 1.33 Gbp | N/A | 2021 draft | NCBI Database | |

###### Order Gaviiformes (Loons)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links | Assembly status |
| Gaviidae | Gavia stellata (Red-throated loon) | bGavSte3.hap2 | 1.32 Gbp | 17,980 | 2021 draft | NCBI Database | |

###### Order Procellariiformes (Petrels)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links |
| Diomedeidae (Albatrosses) | Diomedea exulans (Snowy albatross) | Dexulans_v1 | 1.21 Gbp | 18,000+ | 2023 draft | NCBI Database |
| Diomedeidae (Albatrosses) | Phoebastria albatrus (Short-tailed albatross) | Palbatrus_v1 | 1.21 Gbp | 18,000+ | 2023 draft | NCBI Database |
| Diomedeidae (Albatrosses) | Phoebastria immutabilis (Laysan albatross) | Pimmutabilis_v1 | 1.21 Gbp | 18,000+ | 2023 draft | NCBI Database |
| Diomedeidae (Albatrosses) | Phoebastria irrorata (Waved albatross) | Pirrorata_v1 | 1.21 Gbp | 18,000+ | 2023 draft | NCBI Database |
| Diomedeidae (Albatrosses) | Phoebastria nigripes (Black-footed albatross) | N/A | 1.21 Gbp | 18,000+ | 2023 draft | NCBI Database |
| Diomedeidae (Albatrosses) | Thalassarche chlororhynchos (Atlantic yellow-nosed albatross) | N/A | 1.09 Gbp | 13,136 | 2020 draft | NCBI Database |
| Oceanitidae (Southern Storm Petrels) | Fregetta grallaria (White-bellied storm petrel) | N/A | 1.17 Gbp | 15,459 | 2020 draft | NCBI Database |
| Oceanitidae (Southern Storm Petrels) | Oceanites oceanicus (Wilson's storm petrel) | N/A | 1.18 Gbp | 15,848 | 2020 draft | NCBI Database |
| Hydrobatidae (Northern Storm Petrels) | Oceanodroma leucorhoa (Leach's storm petrel) | OLeu_1.0 | 1.20 Gbp | N/A | 2021 draft | NCBI Database |
| Hydrobatidae (Northern Storm Petrels) | Oceanodroma tethys (Wedge-rumped storm petrel) | N/A | 1.19 Gbp | 15,643 | 2020 draft | NCBI Database |
| Procellariidae | Ardenna gravis (Great shearwater) | N/A | 1.29 Gbp | N/A | N/A, draft | NCBI Database |
| Procellariidae | Calonectris borealis (Cory's shearwater) | bCalBor7.hap2.2 | 1.21 Gbp | N/A | N/A, draft | NCBI Database |
| Procellariidae | Fulmarus glacialis (Northern fulmar) | N/A | 1.14 Gbp | 15,409 | 2014 draft | NCBI Database |
| Procellariidae | Pelecanoides urinatrix (Common diving petrel) | N/A | 1.21 Gbp | 16,294 | 2020 draft | NCBI Database |
| Procellariidae | Puffinus mauretanicus (Balearic shearwater) | N/A | 1.22 Gbp | 21,959 | 2022 draft | NCBI Database |
| Procellariidae | Puffinus yelkouan (Yelkouan shearwater) | N/A | 1.26 Gbp | N/A | N/A, draft | NCBI Database |

###### Order Sphenisciformes (Penguins)

| Family | Genus | Species |
| Spheniscidae | Aptenodytes (Great Penguins) | Aptenodytes forsteri, Emperor penguin |
| Spheniscidae | Aptenodytes (Great Penguins) | Aptenodytes patagonicus, King penguin |
| Spheniscidae | Eudyptes (Crested Penguins) | Eudyptes chrysocome, Western rockhopper penguin |
| Spheniscidae | Eudyptes (Crested Penguins) | Eudyptes chrysolophus chrysolophus, Macaroni penguin |
| Spheniscidae | Eudyptes (Crested Penguins) | Eudyptes chrysolophus schlegeli, Royal penguin |
| Spheniscidae | Eudyptes (Crested Penguins) | Eudyptes filholi, Eastern rockhopper penguin |
| Spheniscidae | Eudyptes (Crested Penguins) | Eudyptes moseleyi, Northern rockhopper penguin |
| Spheniscidae | Eudyptes (Crested Penguins) | Eudyptes pachyrhynchus, Fiordland penguin |
| Spheniscidae | Eudyptes (Crested Penguins) | Eudyptes robustus, Snares penguin |
| Spheniscidae | Eudyptes (Crested Penguins) | Eudyptes sclateri, Erect-crested penguin |
| Spheniscidae | Eudyptula (Little Penguins) | Eudyptula minor albosignata, White-flippered penguin |
| Spheniscidae | Eudyptula (Little Penguins) | Eudyptula minor minor, Little blue penguin |
| Spheniscidae | Eudyptula (Little Penguins) | Eudyptula novaehollandiae, Fairy penguin |
| Spheniscidae | Megadyptes (Hoiho Penguins) | Megadyptes antipodes antipodes, Yellow-eyed penguin |
| Spheniscidae | Pygoscelis (Brush-tailed Penguins) | Pygoscelis adeliae, Adélie penguin |
| Spheniscidae | Pygoscelis (Brush-tailed Penguins) | Pygoscelis antarctica, Chinstrap penguin |
| Spheniscidae | Pygoscelis (Brush-tailed Penguins) | Pygoscelis papua, Gentoo penguin |
| Spheniscidae | Spheniscus (Banded Penguins) | Spheniscus demersus, African penguin |
| Spheniscidae | Spheniscus (Banded Penguins) | Spheniscus humboldti, Humboldt penguin |
| Spheniscidae | Spheniscus (Banded Penguins) | Spheniscus magellanicus, Magellanic penguin |
| Spheniscidae | Spheniscus (Banded Penguins) | Spheniscus mendiculus, Galápagos penguin |
* Genus Aptenodytes (Great Penguins)
** Aptenodytes forsteri, Emperor penguin (2014)
** Aptenodytes patagonicus, King penguin (2019)
* Genus Eudyptes (Crested Penguins)
** Eudyptes chrysocome, Western rockhopper penguin (2019)
** Eudyptes chrysolophus chrysolophus, Macaroni penguin (2019)
** Eudyptes chrysolophus schlegeli, Royal penguin (2019)
** Eudyptes filholi, Eastern rockhopper penguin (2019)
** Eudyptes moseleyi, Northern rockhopper penguin (2019)
** Eudyptes pachyrhynchus, Fiordland penguin (2019)
** Eudyptes robustus, Snares penguin (2019)
** Eudyptes sclateri, Erect-crested penguin (2019)
* Genus Eudyptula (Little Penguins)
** Eudyptula minor albosignata, White-flippered penguin (2019)
** Eudyptula minor minor, Little blue penguin (2019)
** Eudyptula novaehollandiae, Fairy penguin (2019)
* Genus Megadyptes (Hoiho Penguins)
** Megadyptes antipodes antipodes, Yellow-eyed penguin (2019)
* Pygoscelis (Brush-tailed Penguins)
** Pygoscelis adeliae, Adélie penguin (2014)
** Pygoscelis antarctica, Chinstrap penguin (2019)
** Pygoscelis papua, Gentoo penguin (2019)
* Genus Spheniscus (Banded Penguins)
** Spheniscus demersus, African penguin (2019)
** Spheniscus humboldti, Humboldt penguin (2019)
** Spheniscus magellanicus, Magellanic penguin (2019)
** Spheniscus mendiculus, Galápagos penguin (2019)

###### Order Ciconiiformes (Storks)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Nipponia nippon (Crested ibis) | | | | 2014 | |

###### Order Suliformes

| Family | Subfamily | Species | Reference |
| Phalacrocoracida (Cormorants) | Phalacrocoracida (Cormorants) | Phalacrocorax carbo (Great cormorant) | 2017 |
| Phalacrocoracida (Cormorants) | Phalacrocoracida (Cormorants) | Urile pelagicus (Pelagic cormorant) | 2017 |
| Phalacrocoracida (Cormorants) | Phalacrocoracida (Cormorants) | Nannopterum auritum (Double-crested cormorant) | 2017 |
| Phalacrocoracida (Cormorants) | Phalacrocoracida (Cormorants) | Nannopterum brasilianum (Neotropical cormorant) | 2014 |
| Phalacrocoracida (Cormorants) | Phalacrocoracida (Cormorants) | Nannopterum harrisi (Galapagos flightless cormorant) | 2017 |

###### Order Pelecaniformes

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Ardeidae (Herons) | | Egretta garzetta (Little egret) | | | | 2014 | |
| Pelecanidae | | Pelecanus crispus (Dalmatian Pelican) | | | | 2014 | |

##### Afroaves
###### Order Strigiformes (Owls)

| Family | Subfamily | Species | Reference |
| Strigidae | Striginae | Strix occidentalis caurina (Northern spotted owl) | 2014 |
| Strigidae | Striginae | Strix varia (Barred owl) | 2017 |
| Tytonidae | Tytonidae | Tyto alba (Western barn owl) | 2017 |

###### Order Accipitriformes

Add 87 hawk genomes found here: https://pmc.ncbi.nlm.nih.gov/articles/PMC9851080/
| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links |
| Accipitridae | Aquilinae | Aquila chrysaetos (Golden eagle) | | | | 2018 | |
| Accipitridae | Aegypiinae | Aegypius monachus (Cinereous vulture) | | | | 2015 | |
| Accipitridae | Buteoninae | Haliaeetus albicilla (White-tailed eagle) | | | | 2014 | |
| Accipitridae | Buteoninae | Haliaeetus leucocephalus (Bald eagle) | | | | 2014 | |
| Cathartidae (New World Vultures / Condors) | Cathartidae (New World Vultures / Condors) | Cathartes aura (Turkey vulture) | N/A | 1.15 Gbp | 13,116 | 2014 | NCBI Database |
| Cathartidae (New World Vultures / Condors) | Cathartidae (New World Vultures / Condors) | Gymnogyps californianus (California condor) | N/A | 1.24 Gbp | 17,498 | N/A, draft | NCBI Database |
| Cathartidae (New World Vultures / Condors) | Cathartidae (New World Vultures / Condors) | Sarcoramphus papa (King vulture) | bSarPap1.hap1 | 1.54 Gbp | N/A | 2021 draft | NCBI Database |
| Cathartidae (New World Vultures / Condors) | Cathartidae (New World Vultures / Condors) | Vultur gryphus (Andean condor) | N/A | 1.19 Gbp | N/A | N/A, draft | NCBI Database |

###### Order Coliiformes (Mousebirds)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Colius striatus (Speckled mousebird) | | | | 2014 | |

###### Order Leptosomiformes

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Leptosomus discolor (Cuckoo-roller) | | | | 2014 | |

###### Order Trogoniformes (Trogons)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Apaloderma vittatum (Bar-tailed trogon) | | | | 2014 | |

###### Order Bucerotiformes

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Buceros rhinoceros silvestris (Rhinoceros hornbill) | | | | 2014 | |

###### Order Coraciiformes

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Merops nubicus (Northern carmine bee-eater) | | | | 2014 | |

###### Order Piciformes

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Picoides pubescens (Downy woodpecker) | | | | 2014 | |

##### Australaves
###### Order Cariamiformes

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Cariamidae (seriemas) | Cariama cristata (Red-legged seriema) | bCarCri1.pri | 1.22 Gbp | N/A | 2019 draft | BUSCO: Unknown Chromosome scale, alligned to 52 pseudochromosomes (50 somatic + W and Z) Scaffold N50: 30.2 Mbp Contig N50: 13.5 Mbp |
| Cariamidae (seriemas) | Chunga burmeisteri (Black-legged seriema) | N/A | 1.17 Gbp | 15,895 | 2020 draft | BUSCO: Unknown (Somewhere in Supplementary Table 1) Scaffold level assembly Scaffold N50: 1.4 Mbp Contig N50: 72.5 Kbp |

###### Order Falconiformes (Falcons)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| | | Falco cherrug (Saker falcon) | | | | 2013 | |
| | | Falco peregrinus (Peregrine falcon) | | | | 2013 | |

###### Order Psittaciformes (Parrots)

| Family | Subfamily | Species | Reference |
| Strigopidae (New Zealand Parrots) | Strigopidae (New Zealand Parrots) | Nestor notabilis (Kea) | 2014 |
| Strigopidae (New Zealand Parrots) | Strigopidae (New Zealand Parrots) | Strigops habroptila (Kākāpō) | 2023 |
| Psittacidae (African and New World Parrots) | Arinae | Amazona leucocephala (Cuban amazon) | 2019 |
| Psittacidae (African and New World Parrots) | Arinae | Amazona ventralis (Hispaniolan amazon) | 2019 |
| Psittacidae (African and New World Parrots) | Arinae | Amazona vittata (Puerto Rican amazon) | 2012 |
| Psittacidae (African and New World Parrots) | Arinae | Ara macao (Scarlet macaw) | 2013 |
| Psittaculidae (Old World Parrots) | Platycercinae | Cyanoramphus malherbi (Orange-fronted kākāriki) | 2020 |
| Psittaculidae (Old World Parrots) | Loriinae | Melopsittacus undulatus (Budgerigar) | 2014 |

###### Order Passeriformes (Passerines)

| Suborder | Family | Species | Reference |
| Acanthisitti | Acanthisittidae (New Zealand Wrens) | Acanthisitta chloris (Rifleman) | 2014 |
| Tyranni | Philepittidae (Asities) | | |
| Tyranni | Eurylaimidae (Eurylaimid broadbills) | | |
| Tyranni | Calyptomenidae (Asian green broadbills) | | |
| Tyranni | Sapayoidae | | |
| Tyranni | Pittidae (Pittas) | | |
| Tyranni | Pipridae (Manakins) | | |
| Tyranni | Cotingidae (Cotingas) | | |
| Tyranni | Tityridae | | |
| Tyranni | Tyrannidae (Tyrant flycatchers) | | |
| Tyranni | Melanopareiidae (Crescentchests) | | |
| Tyranni | Conopophagidae (Gnateaters) | | |
| Tyranni | Thamnophilidae (Antbirds) | | |
| Tyranni | Grallariidae (Antpittas) | | |
| Tyranni | Rhinocryptidae (Tapaculos) | | |
| Tyranni | Formicariidae (Antthrushes) | | |
| Tyranni | Furnariidae (Ovenbirds) | | |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Corvus brachyrhynchos, American crow | 2014 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Corvus hawaiiensis, Hawaiian crow | 2018 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Eopsaltria australis, Eastern yellow robin | 2019 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Ficedula albicollis, collared flycatcher | 2012 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Ficedula hypoleuca, pied flycatcher | 2012 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Geospiza fortis, medium ground-finch | 2014 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Hirundo rustica, barn swallow | 2018 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Lonchura striata domestica, Society finch | 2018 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Manacus vitellinus, golden-collared manakin | 2014 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Lycocorax pyrrhopterus, Paradise-crow | 2019 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Malurus cyaneus, superb fairywren | 2021 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Manacus vitellinus, golden-collared manakin | 2014 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Notiomystis cincta, stichbird or hihi | 2019 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Paradisaea rubra, red bird-of-paradise | 2019 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Pteridophora alberti, king of Saxony bird-of-paradise | 2019 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Ptiloris paradiseus, paradise riflebird | 2019 |
| Passeri (Songbirds) | Unsorted (to someone who cares about these, please fix this) | Taeniopygia guttata, zebra finch | 2010 |

### Crocodilians

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links |
| Alligatoridae | Alligatorinae (Alligators) | Alligator mississippiensis (American alligator) | AllMis2 | 2.16 Gbp | 18,955 | 2017 draft | NCBI Database |
| Alligatoridae | Alligatorinae (Alligators) | Alligator sinensis (Chinese alligator) | N/A | 2.27 Gbp | 22,200 | 2013 draft | NCBI Database |
| Crocodilidae (Crocodiles) | Crocodylinae | Crocodylus porosus (Saltwater crocodile) | Cpor_3.0 | 2.12 Gbp | 23,128 | 2019 draft | NCBI Database |
| Crocodilidae (Crocodiles) | Crocodylinae | Crocodylus rhombifer (Cuban crocodile) | N/A | 2.31 Gbp | 17,737 | 2024 draft | NCBI Database |
| Gavialidae | Gavialinae (Gharials) | Gavialis gangeticus (Indian gharial) | GavGan_comp1 | 2.64 Gbp | 18,911 | 2014 draft | NCBI Database |

### Turtles
#### Crytodira (Hidden-Neck Turtles)
##### Trionychia (Softshell Turtles)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links |
| Trionychidae | Trionychinae | Apalone spinifera Spiny softshell turtle | N/A | 1.90 Gbp | 15,945 | 2024 draft | NCBI Database |
| Trionychidae | Trionychinae | Pelochelys cantorii Asian giant softshell turtle | N/A | 2.16 Gbp | 21,833 | 2023 draft | NCBI Database |
| Trionychidae | Trionychinae | Pelodiscus sinensis Chinese softshell turtle | PelSin_1.0 | 2.20 Gbp | 24,856 | 2013 draft | NCBI Database |
| Carettochelyidae | Carettochelyinae | Carettochelys insculpta Pig-nosed turtle | N/A | 2.18 Gbp | 19,175 | 2024 draft | NCBI Database |

##### Testudinoidea

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links |
| Emydidae (Terrapins) | Emydinae | Actinemys marmorata (Northwestern pond turtle) | N/A | 2.30 Gbp | N/A | 2022 draft | NCBI Database |
| Emydidae (Terrapins) | Deirochelyinae | Chrysemys picta bellii (Western painted turtle) | N/A | 2.37 Gbp | 25,216 | N/A | NCBI Database |
| Emydidae (Terrapins) | Deirochelyinae | Trachemys scripta elegans (Red-eared slider) | CAS_Tse_1.0 | 2.13 Gbp | 22,456 | 2020 draft | NCBI Database |
| Platysternidae | Platysternidae | Platysternon megacephalum (Big-headed turtle) | N/A | 2.32 Gbp | 21,529 | 2019 draft | NCBI Database |
| Geoemydidae | Geoemydinae | Mauremys reevesii (Chinese three-keeled pond turtle) | N/A | 2.37 Gbp | 22,618 | 2021 draft | NCBI Database |
| Testudinidae (Tortoises) | Testudinidae (Tortoises) | Aldabrachelys gigantea (Aldabra giant tortoise) | AldGig_1.0 | 2.37 Gbp | 23,953 | 2022 draft | NCBI Database |
| Testudinidae (Tortoises) | Testudinidae (Tortoises) | † Chelonoidis abingdonii (Pinta Island giant tortoise) | N/A | 2.30 Gbp | 25,634 | 2019 draft | NCBI Database |
| Testudinidae (Tortoises) | Testudinidae (Tortoises) | Gopherus agassizii (Agassiz’s desert tortoise) | N/A | 2.18 Gbp | 20,172 | 2017 draft | NCBI Database |
| Testudinidae (Tortoises) | Testudinidae (Tortoises) | Testudo graeca (Greek tortoise) | N/A | 2.32 Gbp | 25,998 | 2024 draft | NCBI Database |

##### Chelonioidea (Sea Turtles)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links | Assembly status |
| Cheloniidae | Carettinae | Caretta caretta (Loggerhead sea turtle) | GSC_CCare_1.0 | 2.13 Gbp | 24,887 | 2023 draft | NCBI Database | |
| Cheloniidae | Cheloniinae | Chelonia mydas (Green sea turtle) | rCheMyd1.pri.v2 | 2.13 Gbp | 28,491 | N/A | NCBI Database | |

##### Chelydroidea

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links | Assembly status |
| Chelydridae (Snapping Turtles) | Chelydra serpentina (Common snapping turtle) | N/A | 2.26 Gbp | 21,825 | 2020 draft | NCBI Database | |
| Kinosternidae | Staurotypus triporcatus (Mexican musk turtle) | N/A | 1.75 Gbp | 16,621 | 2024 draft | NCBI Database | |

#### Pleurodira

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Chelidae | Emydura macquarii macquarii (Murray river turtle) | CSIRO-AGI_Emac_v2 | 1.92 Gbp | 27,035 | 2024 draft | BUSCO 97.8% single copy Contig scale assembly Contig N50: 17.1 Mbp |

### Rhynchocephalia
#### Neosphenodontia

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links | Assembly status |
| Sphenodontidae | Sphenodontinae | Sphenodon punctatus (Tuatara) | N/A | 4.27 Gbp | 17,448 | 2020 draft | NCBI Database | |

### Squamates
#### Gekkota (Gekkos)

* Clade Gekkomorpha
** Family Eublepharidae
*** Eublepharis macularius, Leopard gecko (2016)

#### Scinciformata

* Clade Cordylomorpha
** Family Cordylidae
*** Hemicordylus capensis, Cape cliff lizard, (2023)

#### Laterata

* Clade Teiformata
** Family Teiidae
*** Salvator merianae, Argentine black and white tegu, (2018)
* Clade Lacertiformata
** Family Lacertidae
*** Zootoca vivipara, Viviparous lizard (2020)

#### Toxicofera
##### Anguimorpha

* Clade Paleoanguimorpha
** Family Shinisauridae
*** Shinisaurus crocodilurus, Chinese crocodile lizard, (2017)
* Clade Neoanguimorpha
** Family Helodermatidae
*** Heloderma charlesbogerti, Guatemalan beaded lizard, (2022)
** Family Anguidae
*** Dopasia gracilis, Burmese glass lizard, (2015)

##### Iguania

* Clade Acrodonta
** Family Agamidae
*** Pogona vitticeps, Central bearded dragon, (2015)
* Clade Pleurodonta
** Family Dactyloidae
*** Anolis carolinensis, Carolina anole, (2011)
** Family Phrynosomatidae
*** Phrynosoma platyrhinos, Dessert horned lizard, (2021)
*** Phrynosoma cornutum, Texas horned lizard, (2021)
*** Sceloporus undulatus, Eastern fence lizard (2021)

##### Serpentes (Snakes)

* Clade Scolecophidia (Blindsnakes)
** Family Typhlopidae
*** Anilios bituberculatus, Prong-snouted blind snake (2021)
*** Indotyphlops braminus, Brahminy blindsnake, (2022)
* Clade Booidea
** Family Pythonidae
*** Morelia viridis, Green Tree Python (2022)
*** Python bivittatus, Burmese python (2013)
*** Python regius, Ball python (2020)
*** Simalia boeleni, Boelen's Python (2022)
** Family Boidae
*** Boa constrictor, Boa constrictor (2019)
*** Charina bottae, Rubber boa, (2022)
* Clade Caenophidia
** Family Viperidae
*** Azemiops feae, Fea's viper (2022)
*** Bothrops jararaca, Jararaca lancehead, (2021)
*** Crotalus adamanteus, Eastern diamondback rattlesnake (2021)
*** Crotalus mitchellii pyrrhus, southwestern speckled rattlesnake (2014)
*** Crotalus oreganus helleri, southern Pacific rattlesnake (2023)
*** Crotalus tigris, Tiger rattlesnake (2021)
*** Crotalus viridis, Great Plains rattlesnake (2018)
*** Daboia siamensis, Eastern Russell's viper (2022)
*** Deinagkistrodon acutus, Five-pacer viper (2016)
*** Protobothrops flavoviridis, Okinawa Habu (2018)
*** Protobothrops mucrosquamatus, Taiwanese Habu (2017, 2024)
*** Trimeresurus albolabris, White-lipped tree pit viper (2024)
** Family Homalopsidae
*** Myanophis thanlyinesis, (No common name), (2021)
** Family Colubridae
*** Ahaetulla prasina, Asian vine snake (2023)
*** Arizona elegans occidentalis, California glossy snake (2022)
*** Chrysopelea ornata, Ornate Flying Snake (2023)
*** Diadophis punctatus, ring-necked snake (2023)
*** Dolichophis caspius, Caspian whipsnake (2020)
*** Elaphe carinata, King ratsnake (2024)
*** Pantherophis guttatus, corn snake (2014)
*** Pantherophis obsoletus, Leucistic Texas Rat Snake (2021)
*** Ptyas mucosa, Oriental rat snake (2024)
*** Thamnophis sirtalis, Common garter snake (2018)
*** Thermophis baileyi, Tibetan hot-spring snake (2018)
** Family Elapidae
*** Bungarus multicinctus, Many-banded krait (2022)
*** Emydocephalus ijimae, Ijima's turtle-headed sea snake, (2019)
*** Hydrophis curtus, Shaw's Sea Snake (2020)
*** Hydrophis cyanocinctus, blue-banded sea snakes (2021)
*** Hydrophis melanocephalus, slender-necked sea snake, (2019)
*** Laticauda colubrina, yellow-lipped sea krait, (2019)
*** Laticauda laticaudata, blue-lipped sea krait, (2019)
*** Naja atra, Chinese cobra (2024)
*** Naja naja, Indian cobra (2020)
*** Notechis scutatus, mainland tiger snake (2022)
*** Ophiophagus hannah, king cobra (2013)
*** Pseudonaja textilis, Eastern brown snake (2022)

### Mammals
#### Monotremes

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Ornithorhynchidae (Platypuses) | Ornithorhynchus anatinus (Platypus) | mOrnAna1.pri.v4 | 1.86 Gbp | 30,497 | 2020 draft | BUSCO: 91.2% single copy Chromosome scale, alligned to 32 pseudochromosomes (21 somatic + 5 X and 5 Y + mitochondrial) Scaffold N50: 83.3 Mbp Contig N50: 15.1 Mbp |
| Tachyglossidae (Echidnas) | Tachyglossus aculeatus (Short-beaked echidna) | mTacAcu1.pri | 2.21 Gbp | 31,147 | 2020 draft | BUSCO: 90.7% single copy Chromosome scale, alligned to 36 pseudochromosomes (27 somatic + 4 X and 5 Y), no X5 or mitochondrial chromosome Scaffold N50: 63.4 Mbp Contig N50: 19.9 Mbp |

#### Marsupials

* Order Didelphimorphia
** Family Didelphidae (opossums)
*** Monodelphis domestica, gray short-tailed opossum (2007)
* Order Dasyuromorphia
** Family Dasyuridae
*** Antechinus stuartii, brown antechinus (2020)
*** Sarcophilus harrisii, Tasmanian devil
*** Sminthopsis crassicaudata, fat-tailed dunnart (ongoing)
*** Dasyurus hallucatus, northern quoll (ongoing)
** Family Myrmecobiidae
*** Myrmecobius fasciatus, numbat (ongoing)
** † Family Thylacinidae
*** † Thylacinus cynocephalus, thylacine
* Order Peramelemorphia
** Family Peramelidae
*** Perameles gunnii, eastern barred bandicoot (ongoing)
** Family Thylacomyidae
*** Macrotis lagotis, greater bilby (ongoing)
* Order Notoryctemorphia, Family Notoryctidae
** Notoryctes typhlops, southern marsupial mole (ongoing)
* Order Diprotodontia
** Family Macropodidae
*** Macropus eugenii, tammar wallaby (2011)
*** Petrogale penicillata, brush-tailed rock-wallaby (ongoing)
** Family Potoroidae
*** Bettongia gaimardi, eastern bettong (ongoing)
*** Bettongia penicillata ogilbyi, woylie (2021)
** Family Petauridae
*** Gymnobelideus leadbeateri, Leadbeater's possum (ongoing)
** Family Burramyidae
*** Burramys parvus, mountain pygmy possum (ongoing)
** Family Vombatidae
*** Vombatus ursinus, common wombat (ongoing)
** Family Phascolarctidae
*** Phascolarctos cinereus, koala (2013 draft)

#### Placentals
##### Afrotheria
###### Order Hyracoidea

* Family Procaviidae
** Procavia capensis, Rock hyrax, (2011)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

###### Order Proboscidea

* Family Elephantidae (Elephants)
** Elephas maximus, Asian elephant, (2015, 2024)
** † Mammuthus primigenius, Wooly mammoth, (2015)
** Loxodonta africana, African bush elephant, (2009, 2024)
** Loxodonta cyclotis, African forest elephant, (2018)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

###### Order Sirenia (Sea Cows)

* Family Trichechidae
** Trichechus manatus, West Indian manatee, (2015)
* Family Dugongidae
** Dugong dugon, Dugong, (2024)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

##### Euarchontoglires

* Order Lagomorpha
** Family Leporidae
*** Oryctolagus cuniculus, European rabbit (2010)
* Order Primates
** Family Callitrichidae
*** Callithrix jacchus, Common marmoset (2010, whole genome 2014)
** Family Cercopithecidae
*** Macaca mulatta, rhesus macaque (2007 & Chinese rhesus macaque Macaca mulatta lasiota in 2011)
*** Macaca fascicularis, Cynomolgus or crab-eating macaque (2011)
*** Papio anubis, olive baboon (2020)
*** Papio cynocephalus, yellow baboon (2016)
*** Rhinopithecus roxellana, golden snub-nosed monkey (2019)
** Family Galagidae
*** Otolemur garnettii, small-eared galago, or bushbaby
** Family Hominidae
*** Subfamily Ponginae
**** Pongo pygmaeus/Pongo abelii, orangutan (Borneo/Sumatra) (2011)
*** Subfamily Homininae
**** Gorilla gorilla, western gorilla (2012)
**** Homo sapiens, modern human (draft 2001, whole genome 2022)
**** † Homo neanderthalensis, Neanderthal (draft 2010)
**** Pan troglodytes, chimpanzee (2005)
**** Pan paniscus, bonobo (2012)
* Order Rodentia
** Family Caviidae
*** Hydrochoerus hydrochaeris, capybara (2018)
** Family Cricetidae
*** Microtus montanus, Montane vole (2021)
*** Microtus richardsoni, North American Water Vole (2021)
*** Peromyscus leucopus, white-footed mouse (2019)
** Family Heteromyidae
*** Perognathus longimembris pacificus, Pacific Pocket Mouse
** Family Muridae
*** Mastomys coucha, Southern multimammate mouse (2019)
*** Mus musculus Strain: C57BL/6J, House mouse (2002)
*** Rattus norvegicus, Brown rat (2004)

##### Laurasiatheria

* Order Artiodactyla (even-toed ungulates)
** Family Antilocapridae
*** Antilocapra americana, pronghorn (2019)
** Family Balaenidae
*** Balaena mysticetus, bowhead whale (2015)
*** Eubalaena glacialis, North Atlantic right whale (2018)
** Family Balaenopteridae
*** Balaenoptera acutorostrata, common minke whale (2014)
*** Balaenoptera borealis, sei whale (2018)
*** Balaenoptera musculus, blue whale (2018)
*** Balaenoptera physalus, fin whale (2014)
*** Megaptera novaeangliae, humpback whale (2018)
** Family Bovidae
*** Ammotragus lervia, Barbary sheep (2019)
*** Antidorcas marsupialis, Springbox (2019)
*** Bison bonasus, European bison (2017)
*** Bos grunniens, yak 2012
*** Bos primigenius indicus, zebu or Brahman cattle (2012)
*** Bos primigenius taurus, cow 2009
*** Bubalus bubalis, river buffalo (2017)
*** Capra ibex, Goats (2019)
*** Cephalophus harveyi, Harvey's duiker (2019)
*** Connochaetes taurinus, blue wildebeest (2019)
*** Damaliscus lunatus, common tsessebe (2019)
*** Gazella thomsoni, Thomson's gazelle (2019)
*** Hippotragus niger, Sable Antelope (2019)
*** Kobus ellipsiprymnus, Waterbuck (2019)
*** Litocranius walleri, Gerenuk (2019)
*** Oreotragus oreotragus, Klipspringer (2019)
*** Oryx gazella, Gemsbok (2019)
*** Ourebia ourebi, Oribi (2019)
*** Ovis ammon, Argali (2019)
*** Ovis ammon polii, marco polo sheep (2017)
*** Nanger granti, Grant's gazelle (2019)
*** Neotragus moschatus, Suni (2019)
*** Neotragus pygmaeus, Royal antelope (2019)
*** Philantomba maxwellii, Maxwell's duiker (2019)
*** Procapra przewalskii, Przewalski's gazelle (2019)
*** Pseudois nayaur, Bharal (2019)
*** Raphicerus campestris, Steenbox (2019)
*** Redunca redunca, Bohor reedbuck (2019)
*** Syncerus caffer, African buffalo (2019)
*** Sylvicapra grimmia, common duiker (2019)
*** Tragelaphus, Spiral-horned bovine (2019)
*** Tragelaphus buxtoni, Mountain nyala (2019)
*** Tragelaphus strepsiceros, Greater kudu (2019)
*** Tragelaphus imberbis, Lesser kudu (2019)
*** Tragelaphus spekii, Sitatunga (2019)
*** Tragelaphus scriptus, Bushbuck (2019)
*** Taurotragus oryx, Common eland (2019)
** Family Camelidae
*** Camelus ferus, Wild Bactrian camel (2007)
** Family Cervidae
*** Cervus albirostris, Tharold's deer (2019)
*** Elaphurus davidianus, Père David's deer (2018)
*** Muntiacus crinifrons, hairy-fronted muntjac (2019)
*** Muntiacus muntjak, Indian muntjac (2019)
*** Muntiacus reevesi, Reeves's muntjac (2019)
*** Odocoileus hemionus, mule deer (2021)
*** Rangifer tarandus, Reindeer (2017)
** Family Delphinidae
*** Tursiops truncatus, bottlenosed dolphin (2012)
*** Neophocaena phocaenoides, finless porpoise (2014)
*** Orcinus orca, killer whale (2015)
*** Sousa chinensis, Indo-Pacific humpback dolphin (2019)
** Family Eschrichtiidae
*** Eschrichtius robustus, gray whale (2018)
** Family Giraffidae
*** Giraffa camelopardalis, Giraffe (2019)
*** Giraffa camelopardalis tippelskirchi, Masai giraffe (2019)
*** Okapia johnstoni, Okapi (2019)
** Family Monodontidae
*** Delphinapterus, beluga whale (2017)
** Family Moschidae
*** Moschus berezovskii, forest musk deer (2018)
*** Moschus chrysogaster, Alpine musk deer (2019)
** Family Phocoenidae
*** Neophocaena asiaeorientalis sunameri, East Asian finless porpoise
** Family Physeteridae
*** Physeter macrocephalus, sperm whale (2019)
** Family Suidae
*** Sus scrofa, pig (2012)
** Family Tragulidae
*** Tragulus javanicus, Java mouse-deer (2019)
* Order Carnivora
** Family Felidae
*** Acinonyx jubatus, cheetah (2015)
*** Felis catus, cat (2007)
*** Panthera leo, lion (2013)
*** Panthera pardus, Amur leopard (2016)
*** Panthera tigris tigris, Siberian tiger (2013)
*** Panthera tigris tigris, Bengal tiger (2013)
*** Panthera uncia, snow leopard (2013)
*** Prionailurus bengalensis, leopard cat (2016)
** Family Canidae
*** Canis familiaris, dog (2005)
*** Canis lupus lupus, wolf (2017).
*** Lycaon pictus, african wild dog (2018)
** Family Ursidae
*** Ailuropoda melanoleuca, giant panda (2010)
*** Ursus arctos ssp. horribilis, Grizzly bear (2018)
*** Ursus americanus, American black bear (2019)
*** Ursus maritimus, Polar bear (2014)
** Family Odobenidae
*** Odobenus rosmarus, walrus (2015)
** Family Mustelidae
*** Enhydra lutris kenyoni, sea otter (2017)
*** Mustela erminea, stoat (2018)
*** Mustela furo, ferret (2014)
*** Pteronura brasiliensis, giant otter (2019)
* Order Chiroptera
** Family Megadermatidae
*** Megaderma lyra, greater false vampire bat (2013)
** Family Mormoopidae
*** Pteronotus parnellii, Parnell's mustached bat (2013)
** Family Pteropodidae
*** Pteropus vampyrus, fruit bat (2012)
*** Eidolon helvum, Old World fruit bat (2013)
** Family Rhinolophidae
*** Rhinolophus ferrumequinum, greater horseshoe bat (2013)
** Family Vespertilionidae
*** Myotis lucifugus, little brown bat (2010)
** Family Phyllostomidae
*** Leptonycteris yerbabuenae, long nosed bat (2020)
*** Leptonycteris nivalis, greater long nosed bat (2020)
*** Musonycteris harrisoni, banana bat (2020)
*** Artibeus jamaicensis, Jamaican fruit bat (2020)
*** Macrotus waterhousii, Waterhouse's leaf-nosed bat (2020
* Order Erinaceomorpha, Family Erinaceidae
** Erinaceus europaeus, western European hedgehog
* Order Eulipotyphla, Family Solenodontidae
** Solenodon parodoxus, Hispaniolan solenodon (2018)
* Order Perissodactyla (odd-toed ungulates)
** Family Equidae
*** Equus caballus, horse (2009 2018)

## Arthropods
### Insects

* Order Blattodea
** Blattella germanica, German cockroach (2018)
** Periplaneta americana, American cockroach (2018)
** Zootermopsis nevadensis, a dampwood termite (2014
** Cryptotermes secundus, a drywood termite(2018)
** Macrotermes natalensis, a higher termite (2014
* Order Coleoptera
** Dendroctonus ponderosae Hopkins, beetle (mountain pine beetle) (2013)
** Aquatica lateralis, Japanese aquatic firefly "Heike-botaru" (firefly) (2018)
** Photinus pyralis, Big Dipper firefly (2018)
** Protaetia brevitarsis, White-spotted flower chafer (2019)
** Tribolium castaneum Strain:GA-2, beetle (red flour beetle) (2008)
** Allomyrina dichotoma, Japanese rhinoceros beetle (2022)
* Order Collembola
** Family Isotomidae
*** Desoria tigrina, (2021)
** Family Sminthurididae
*** Sminthurides aquaticus, (2021)
* Order Diptera
** Family Calliphoridae
*** Aldrichina grahami, Forensic blowfly (2020)
** Family Chironomidae
*** Dasypogon diadema, Hunting Robber fly (2019)
*** Parochlus steinend, Antarctic winged midge (2017)
*** Proctacanthus coquilletti, Assassin fly (2017)
** Family Culicidae (mosquitoes)
*** Aedes aegypti Strain:LVPib12, mosquito (vector of dengue fever, etc.) (2007)
*** Aedes albopictus (2015)
*** Anopheles darlingi
*** Anopheles gambiae Strain: PEST, mosquito (vector of malaria) (2002)
*** Anopheles gambiae Strain: M, mosquito (vector of malaria) (2010)
*** Anopheles gambiae Strain: S, mosquito (vector of malaria) (2010)
*** Anopheles sinensis, mosquito (vector of vivax malaria, lymphatic filariasis and Setaria infections), (2014)
*** Anopheles stephensii
*** Anopheles arabiensis (2015)
*** Anopheles quadriannulatus (2015)
*** Anopheles merus (2015)
*** Anopheles melas (2015)
*** Anopheles christyi (2015)
*** Anopheles epiroticus (2015)
*** Anopheles maculatus (2015)
*** Anopheles culicifacies (2015)
*** Anopheles minimus (2015)
*** Anopheles funestus (2015, 2019)
*** Anopheles dirus (2015)
*** Anopheles farauti (2015)
*** Anopheles atroparvus (2015)
*** Anopheles sinensis (2015)
*** Anopheles albimanus (2015)
*** Culex quinquefasciatus, mosquito (vector of West Nile virus, filariasis etc.) (2010)
** Family Drosophilidae (fruit flies)
*** Drosophila albomicans, fruit fly (2012)
*** Drosophila ananassae, fruit fly (2007)
*** Drosophila biarmipes, fruit fly (2011)
*** Drosophila bipectinata, fruit fly (2011)
*** Drosophila erecta, fruit fly (2007)
*** Drosophila elegans, fruit fly (2011)
*** Drosophila eugracilis, fruit fly (2011)
*** Drosophila ficusphila, fruit fly (2011)
*** Drosophila grimshawi, fruit fly (2007)
*** Drosophila kikkawai, fruit fly (2011)
*** Drosophila melanogaster, fruit fly (model organism) (2000)
*** Drosophila mojavensis, fruit fly (2007)
*** Drosophila neotestacea, fruit fly (transcriptome 2014)
*** Drosophila persimilis, fruit fly (2007)
*** Drosophila pseudoobscura, fruit fly (2005)
*** Drosophila rhopaloa, fruit fly (2011)
*** Drosophila santomea, fruit fly
*** Drosophila sechellia, fruit fly (2007)
*** Drosophila simulans, fruit fly (2007)
*** Drosophila takahashi, fruit fly (2011)
*** Drosophila virilis, fruit fly (2007)
*** Drosophila willistoni, fruit fly (2007)
*** Drosophila yakuba, fruit fly (2007)
** Family Phoridae
*** Megaselia abdita, scuttle fly (transcriptome 2013)
** Family Psychodidae (drain flies)
*** Clogmia albipunctata, moth midge (transcriptome 2013)
** Family Sarcophagidae (flesh flies)
*** Sarcophaga Bullata, Flesh fly (2019)
** Family Syrphidae (hoverflies)
*** Episyrphus balteatus, hoverfly (transcriptome 2011)
* Order Hemiptera
** Acyrthosiphon pisum, aphid (pea aphid) (2010)
** Ericerus pela, Chinese wax scale insect (2019)
** Laodelphax striatellus, small brown planthopper (2017)
** Lycorma delicatula, spotted lanternfly (2019)
** Rhodnius prolixus, kissing-bug (2015)
** Rhopalosiphum maidis, Corn leaf aphid (2019)
** Sitobion miscanthi, Indian grain aphid (2019)
** Triatoma rubrofasciata, assassin bug (2019)
* Order Hymenoptera
** Acromyrmex echinatior colony Ae372, ant (Panamanian leafcutter) (2011)
** Apis mellifera, bee (honey bee), (model for eusocial behavior) (2006)
** Atta cephalotes, ant (leaf-cutter ant) (2011)
** Camponotus floridanus, ant (2010)
** Cerapachys biroi, ant (clonal raider ant)(2014)
** Euglossa dilemma, Green orchid bee (2017)
** Harpegnathos saltator, ant (2010)
** Lasius niger, ant (black garden ant)(2017)
** Linepithema humile, ant (Argentine ant) (2011)
** Nasonia giraulti, wasp (parasitoid wasp) (2010)
** Nasonia longicornis, wasp (parasitoid wasp) (2010)
** Nasonia vitripennis, wasp (parasitoid wasp; model organism) (2010)
** Nomia Melanderi, Alkali bee (2019)
** Pogonomyrmex barbatus, ant (red harvester ant) (2011)
** Solenopsis invicta, ant (fire ant) (2011)
* Order Lepidoptera
** Abrostola tripartita Hufnagel, Spectacle (2021)
** Achalarus lyciades, Hoary Edge Skipper (2017)
** Ahamus jianchuanensis, Jianchuan ghost moth (2024)
** Antharaea yamamai, Japanese oak silk moth (2019)
** Arctia plantaginis, Wood tiger moth (2020)
** Bicyclus anynana, squinting bush brown (2017)
** Bombyx mori Strain:p50T, moth (domestic silk worm) (2004)
** Calycopis cecrops, Red-Banded Groundstreak (2016)
** Calycopis isobeon, Dusky-Blue Groundstreak (2016)
** Coenonympha arcania, Pearly Heath (2024)
** Cydia pomonella, codling moth (2019)
** Danaus plexippus, monarch butterfly) (2011)
** Heliconius melpomene, butterfly (2012)
** Keiferia lycopersicella, Tomato pinworm (2024)
** Melitaea cinxia, Glanville fritillary butterfly (2014)
** Megathymus ursus violae, bear giant skipper butterfly (2018)
** Morpho helenor, Common blue morpho (2023)
** Morpho achilles, Blue-banded morpho (2023)
** Morpho deidamia (2023)
** Papilio bianor, Chinese peacock butterfly (2019)
** Phthorimaea absoluta, Tomato leafminer (2024)
** Pieris rapae, small cabbage white butterfly (2016)
** Plodia interpunctella, Indianmeal moth (2022)
** Plutella xylostella, moth (diamondback moth) (2013)
** Scrobipalpa atriplicella, Goosefoot groundling moth (2024)
** Spodoptera frugiperda, Fall armyworm (2017)
** Thitarodes armoricanus, Himalaya ghost moth (2024)
** Thitarodes xiaojinensis, Xiaojin ghost moth (2024)
** Troides aeacus, Golden birdwing (2024)
** Eudocima phalonia, fruit-piercing moth (2017)
* Order Orthoptera
** Locusta migratoria, migratory locust (2014)
** Schistocerca gregaria, desert locust (2020)
** Gryllus bimaculatus, two-spotted cricket (2021)
* Order Phthiraptera
** Pediculus humanus, louse (sucking louse; parasite) (2010)
* Psocoptera
** Liposcelis brunnea, booklouse (2022)
* Order Raphidioptera
** Venustoraphidia nigricollis, black-necked snakefly (2023)
* Order Trichoptera
** Eubasilissa regina, purple caddisfly (2022,)
** Stenopsyche tienmushanensisi, Caddisfly (2018)

### Crustaceans

* Acartia tonsa dana, cosmopolitan calanoid copepod (2019)
* Cherax quadricarinatus, Red claw crayfish (2020)
* Daphnia pulex, water flea (2007)
* Eulimnadia texana, Clam Shrimp (2018)
* Macrobrachium nipponense, oriental river prawn (2021)
* Neocaridina denticulata, shrimp (2014)
* Parhyale hawaiensis, amphipod (2016)
* Pollicipes pollicipes, Gooseneck barnacle (2022)
* Portunus trituberculatus, swimming crab (2020)
* Procambarus virginalis, marbled crayfish (2018)
* Sphaeroma terebrans, a wood-boring isopod (2019)
* Tigriopus kingsejongensis, antarctic-endemic copepod (2017)

### Chelicerates

Order Xiphosura:
* Limulus polyphemus, Atlantic horseshoe crab (2014)
* Carcinoscorpius rotundicauda, mangrove horseshoe crab (2021)
* Tachypleus tridentatus, tri-spine horseshoe crab (2021)
Order Ixodida:
* Ixodes scapularis, deer tick (2016)
Order Mesostigmata:
* Tropilaelaps mercedesae, honeybee mite (2017)
Order Trombidiformes:
* Tetranychus urticae, spider mite (2011)
Order Scorpiones:
* Mesobuthus martensii, Chinese scorpion (2013)
Order Araneae:
* Acanthoscurria geniculata, Brazilian whiteknee tarantula (2014)
* Argiope bruennichi, European wasp spider (2021)
* Dysdera silvatica, Canary Island nocturnal endemic woodlouse spider (2019)
* Latrodectus elegans, Black widow spider (2022)
* Nephila clavipes, (golden silk orb-weaver) (2017)
* Parasteatoda tepidariorum, (common house spider) (2017)
* Stegodyphus mimosarum, African social velvet spider (2014)
* Uloborus diversus, Cribellate orb-weaving spider, (2023)

### Myriapods

* Strigamia maritima, centipede

## Onychophora (Velvet Worms)

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Tardigrades

* Hypsibius dujardini, water bear (2015)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Nematodes

* Ancylostoma ceylanicum, zoonotic hookworm infecting both humans and other mammals (2015)
* Aplectana chamaeleonis, amphibian parasite (2023)
* Ascaris suum, pig-infecting giant roundworm, closely related to human-infecting giant roundworm Ascaris lumbricoides (2011)
* Brugia malayi (Strain:TRS), human-infecting filarial parasite (2007)
* Bursaphelenchus xylophilus, infects pine trees (2011)
* Caenorhabditis angaria (Strain:PS1010) (2010)
* Caenorhabditis brenneri, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
* Caenorhabditis briggsae (2003)
* Caenorhabditis elegans (Strain:Bristol N2), model organism (1998)
* Caenorhabditis remanei, a gonochoristic (male-female obligate) species more closely related to C. briggsae than C. elegans
* Dirofilaria immitis, dog-infecting filarial parasite (2012)
* Globodera pallida, plant pathogen (2014)
* Haemonchus contortus, blood-feeding parasite infecting sheep and goats (2013)
* Heterodera glycines, soybean cyst nematode (2019)
* Heterorhabditis bacteriophora, (2013)
* Loa loa, human-infecting filarial parasite (2013)
* Meloidogyne hapla, northern root-knot nematode (plant pathogen) (2008)
* Meloidogyne incognita, southern root-knot nematode (plant pathogen) (2008)
* Necator americanus, human-infecting hookworm (2014)
* Onchocerca volvulus, human-infecting filarial parasite
* Pristionchus pacificus, model invertebrate (2008)
* Romanomermis culicivorax, entomopathogenic nematode that invades larvae of various mosquito species (2013)
* Trichuris suis, pig-infecting whipworm (2014)
* Trichuris muris, mouse-infecting whipworm (2014)
* Trichuris trichiura, human-infecting whipworm (2014)
* Wuchereria bancrofti, human-infecting filarial parasite
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Nematomorpha

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Priapulida

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Kinorhyncha

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Loricifera

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Molluscs
### Polyplacophora (Chitons)

| Family | Subfamily | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference |
| Acanthochitonidae | Acanthochitoninae | Acanthochitona rubrolineata | OUC_Aru_1.0 | 1.08 Gbp | 32,291 | 2024 draft |
| Acanthochitonidae | Cryptochitoninae | Cryptochiton stelleri (Gumboot chiton) | | | | |
| Chitonidae | Acanthopleurinae | Acanthopleura granulata (Fuzzy Caribbean chiton) | | | | 2020 |
| Chitonidae | Acanthopleurinae | Liolophura japonica (Common chiton) | | | | 2024 |
| Chitonidae | Chitoninae | Chiton olivaceus | | | | |
| Leptochitonidae | | Deshayesiella sirenkoi | | | | |
| Tonicellidae | | Lepidochitona cinerea | | | | |
| Tonicellidae | | Tonicella lineata | | | | |
| Mopaliidae | | Mopalia muscosa | | | | |
| Mopaliidae | | Mopalia vespertina | | | | |
| Mopaliidae | | Mopalia ciliata | | | | |
| Mopaliidae | | Mopalia kennerleyi | | | | |
| Mopaliidae | | Mopalia swanii | | | | |
| Mopaliidae | | Katharina tunicata | | | | |
| Hanleyidae | | Hanleya hanleyi | | | | |
| Ischnochitonidae | | Lepidozona retiporosa | | | | |

### Caudofoveata

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Links | Assembly status |
| Chaetodermatidae | Chaetoderma sp. | | 2.45 Gbp | 23,675 | 2024 draft | NCBI Database | |

### Cephalopods

* Architeuthis dux, giant squid (2020)
* Euprymna scolopes, Hawaiian bobtail squid (2019)
* Hapalochlaena maculosa, Southern blue-ringed octopus (2020)
* Octopus bimaculoides, California two-spot octopus (2015)
* Octopus minor, common long-arm octopus (2018)
* Octopus vulgaris, common octopus (2019)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

### Bivalves

* Argopecten purpuratus, peruvian scallop (2018)
* Bathymodiolus platifrons, seep mussel (2017)
* Chlamys farreri, Zhikong scallop (2017)
* Crassostrea angulata, Portuguese oyster (2023)
* Crassostrea gigas, Pacific oyster (2012)
* Dreissena rostriformis, Quagga mussel (2019)
* Limnoperna fortunei, invasive golden mussel (2017)
* Margaritifera margaritifera, European freshwater pearl mussel (2023)
* Modiolus philippinarum, shallow water mussel (2017)
* Mytilus galloprovincialis, Mediterranean mussel (2016)
* Panopea generosa, Pacific geoduck (2023)
* Patinopecten yessoensis, Yesso scallop (2017)
* Pecten maximus, Great scallop (2020)
* Pinctada fucata, Pearl oyster (2012)
* Ruditapes philippinarum, Manila clam (2017)
* Saccostrea glomerata, Sydney rock oyster (2018)
* Scapharca broughtonii, Blood clam (2019)
* Tridacna crocea, Giant clam (2023)
* Venustaconcha ellipsiformis, freshwater mussel (2018)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

### Gastropods

* Achatina fulica, giant African snail (2019)
* Biomphalaria glabrata, a medically important air-breathing freshwater snail in the family Planorbidae (2017)
* Biomphalaria straminea, Ramshorn snail (2022)
* Candidula unifasciata, Land snail (2021)
* Conus ventricosus, Mediterranean cone snail (2021)
* Elysia chlorotica, a solar-powered sea slug (2019)
* Haliotis discus hannai, pacific abalone (2017)
* Kalloconus canariensis, Canary Island cone shell (2023)
* Kelletia kelletii, Kellet’s whelk (2023)
* Lottia gigantea, owl limpet (2013)
* Plakobranchus ocellatus, Kleptoplastic sea slug (2021)
* Pomacea canaliculata, golden apple snail (2018)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

### Scaphopods
#### Dentaliida

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Dentaliidae | Pictodentalium vernedei | | | | 2023 | |

#### Gadilida

| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |
| Gadilidae | Siphonodentalium dalli | | | | 2023 | |

## Platyhelminthes

* Clonorchis sinensis, liver fluke (human pathogen) (draft 2011)
* Echinococcus granulosus, tapeworm (dog pathogen) (2013, 2013)
* Echinococcus multilocularis, tapeworm (2013)
* Hymenolepis microstoma, tapeworm (2013)
* Schistosoma haematobium, schistosome (human pathogen) (2012 2019)
* Schistosoma japonicum, schistosome (human pathogen) (2009)
* Schistosoma mansoni, schistosome (human pathogen) (2009, 2012)
* Schmidtea mediterranea, planarian (model organism) (2006)
* Taenia solium, tapeworm (2013)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Annelids

* Capitella teleta, polychaete (2007, 2013)
* Helobdella robusta, leech (2007, 2013)
* Eisenia fetida, earthworm (2015, 2016)
* Paraescarpia echinospica, deep-sea tubeworm (2021,)
* Hirudinaria manillensis, Asian Buffalo leech (2023)
* Hirudo nipponia, Japanese blood-sucking leech (2023)
* Whitmania pigra, Asian freshwater leech (2023)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Bryozoa

* Bugula neritina, bryozoan (2020,)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Brachiopoda

* Lingula anatina, brachiopod (2015,)
| Family | Species | Assembly Name | Genome Size | Number of Predicted Genes | Reference | Assembly status |

## Rotifera

* Adineta vaga, rotifer (2013,)