# 2009–10 UEFA Europa League qualifying phase and play-off round

This article details the 2009–10 UEFA Europa League qualifying phase and play-off round.
All times are CEST (UTC+2).

## Teams

This table shows the path of all 174 teams involved in the qualifying phase and play-off round, including the 15 losing teams from the Champions League third qualifying round which joined at the play-off round (marked by CL). 38 teams qualified for the group stage to join the 10 losing teams from the Champions League play-off round.
* Key to colours
* Winners of play-off round advanced to group stage
Play-off round :
| Team | Coeff. |
| Werder Bremen | 91.339 |
| Villarreal | 80.853 |
| Shakhtar Donetsk | 74.370 |
| Zenit Saint Petersburg | 68.525 |
| Benfica | 64.292 |
| Valencia | 59.853 |
| Ajax | 54.826 |
| Everton | 35.899 |
| Heerenveen | 33.826 |
| Lazio | 26.582 |
| Hertha BSC | 26.339 |
| Sparta Prague | 25.150 |
| Dinamo București | 25.781 |
| AEK Athens | 25.633 |
| Slavia Prague | 25.150 |
| Aston Villa | 23.899 |
| Partizan | 23.050 |
| Twente | 17.826 |
| Dinamo Zagreb | 16.466 |
| Litex Lovech | 16.250 |
| Toulouse | 14.033 |
| CFR Cluj | 13.781 |
| Genoa | 12.582 |
| Heart of Midlothian | 11.575 |
| Trabzonspor | 10.445 |
| Guingamp | 10.033 |
| Amkar Perm | 9.525 |
| Dynamo Moscow | 9.525 |
| Vorskla Poltava | 8.370 |
| Sion | 8.050 |
| BATE Borisov | 7.733 |
| Nacional | 7.292 |
| Sivasspor | 6.445 |
| Genk | 6.065 |
| Teplice | 5.150 |
| Stabæk | 3.760 |
| Slovan Bratislava | 2.933 |
| Maribor | 2.816 |
| Baku | 0.899 |
| Levadia Tallinn | 0.866 |
| Aktobe | 0.649 |
Third qualifying round :
| Team | Coeff. |
| Roma | 78.582 |
| PSV Eindhoven | 75.826 |
| Hamburger SV | 67.339 |
| Fenerbahçe | 52.445 |
| Lille | 47.033 |
| Braga | 39.292 |
| Club Brugge | 34.065 |
| Austria Wien | 31.565 |
| Metalist Kharkiv | 24.370 |
| Athletic Bilbao | 23.853 |
| Hapoel Tel Aviv | 18.050 |
| Fulham | 15.899 |
| CSKA Sofia | 14.250 |
| Odense | 12.890 |
| Lech Poznań | 12.583 |
| Slovan Liberec | 12.150 |
| Aberdeen | 11.575 |
| Krylia Sovetov Samara | 11.525 |
| Vaslui | 9.781 |
| PAOK | 9.633 |
| Young Boys | 6.050 |
| Vålerenga | 4.760 |
| Fredrikstad | 3.760 |
| Vojvodina | 3.050 |
| APOP Kinyras | 3.016 |
| IFK Göteborg | 2.938 |
| Košice | 2.933 |
| Hajduk Split | 2.466 |
| Interblock | 1.816 |
| Honvéd | 1.633 |
Second qualifying round :
| Team | Coeff. |
| Steaua București | 53.781 |
| Basel | 51.050 |
| Galatasaray | 33.445 |
| AaB | 24.890 |
| Red Star Belgrade | 12.050 |
| Brøndby | 10.890 |
| Metalurh Donetsk | 10.370 |
| Žilina | 8.933 |
| Tromsø | 8.760 |
| Rapid Wien | 8.565 |
| Paços de Ferreira | 8.292 |
| NAC Breda | 7.826 |
| AEL | 7.633 |
| IF Elfsborg | 6.938 |
| Falkirk | 5.575 |
| Cherno More | 5.250 |
| Gent | 5.065 |
| Sigma Olomouc | 4.150 |
| Legia Warsaw | 3.583 |
| Sturm Graz | 3.565 |
| Dinamo Tbilisi | 3.332 |
| Sevojno | 3.050 |
| Maccabi Netanya | 3.050 |
| Omonia | 3.016 |
| St Patrick's Athletic | 2.899 |
| Derry City | 2.899 |
| HIT Gorica | 2.816 |
| Rijeka | 2.466 |
| Rabotnicki | 2.033 |
| HJK | 1.958 |
| Honka | 1.958 |
| Sūduva | 1.933 |
| Kaunas | 1.933 |
| Liepājas Metalurgs | 1.832 |
| Skonto | 1.832 |
| Naftan Novopolotsk | 1.733 |
| Slavija | 1.733 |
| Sarajevo | 1.733 |
| Újpest | 1.633 |
| Dacia Chișinău | 1.333 |
| Iskra-Stal | 1.333 |
| KR | 1.333 |
| Vaduz | 1.100 |
| Milano | 1.033 |
| Qarabağ | 0.899 |
| Flora | 0.866 |
| Flamurtari | 0.799 |
| Tobol | 0.649 |
| Gandzasar Kapan | 0.599 |
| Bangor City | 0.466 |
| Crusaders | 0.433 |
| HB | 0.433 |
| Differdange 03 | 0.266 |
| Petrovac | 0.200 |
| FC Santa Coloma | 0.100 |
| Sliema Wanderers | 0.099 |
| Juvenes/Dogana | 0.050 |
First qualifying round :
| Team | Coeff. |
| Rosenborg | 28.760 |
| Anorthosis Famagusta | 12.016 |
| Helsingborgs IF | 9.938 |
| Motherwell | 5.575 |
| Randers | 4.890 |
| Bnei Yehuda | 3.050 |
| Spartak Trnava | 2.933 |
| Polonia Warsaw | 2.583 |
| Slaven Belupo | 2.466 |
| Lahti | 1.958 |
| Vėtra | 1.933 |
| Sligo Rovers | 1.899 |
| Dinaburg | 1.832 |
| Rudar Velenje | 1.816 |
| Dinamo Minsk | 1.733 |
| MTZ-RIPO Minsk | 1.733 |
| Široki Brijeg | 1.733 |
| Haladás | 1.633 |
| Zimbru Chișinău | 1.333 |
| Keflavík | 1.333 |
| Fram | 1.333 |
| Olimpi Rustavi | 1.332 |
| Zestaponi | 1.332 |
| Renova | 1.033 |
| Inter Baku | 0.899 |
| Simurq | 0.899 |
| Narva Trans | 0.866 |
| Nõmme Kalju | 0.866 |
| Vllaznia | 0.799 |
| Dinamo Tirana | 0.799 |
| Irtysh | 0.649 |
| Okzhetpes | 0.649 |
| Mika | 0.599 |
| Banants | 0.599 |
| Llanelli | 0.466 |
| The New Saints | 0.466 |
| Linfield | 0.433 |
| Lisburn Distillery | 0.433 |
| B36 | 0.433 |
| NSÍ | 0.433 |
| Grevenmacher | 0.266 |
| Käerjéng 97 | 0.266 |
| Budućnost Podgorica | 0.200 |
| Sutjeska | 0.200 |
| Valletta | 0.099 |
| Birkirkara | 0.099 |

### Notes

* $^{CL-CP}$ Losing teams from the Champions League third qualifying round (Champions Path)
* $^{CL-NCP}$ Losing teams from the Champions League third qualifying round (Non-Champions Path)

## First qualifying round
### Seeding

The draw for the first qualifying round was held on 22 June 2009. Clubs were separated into seeded and unseeded teams based on their club coefficient; teams with a coefficient of at least 1.332 were seeded. In the draw, teams were split into five groups, each containing four or five seeded and unseeded teams.
| Group 1 | Group 1 | Group 2 | Group 2 | Group 3 | Group 3 |
| Seeded | Unseeded | Seeded | Unseeded | Seeded | Unseeded |
| Rosenborg Lahti Vėtra MTZ-RIPO Minsk Haladás | Dinamo Tirana Irtysh NSÍ Grevenmacher Sutjeska | Anorthosis Famagusta Slaven Belupo Sligo Rovers Zimbru Chișinău Olimpi Rustavi | Vllaznia Okzhetpes B36 Käerjéng 97 Birkirkara | Helsingborgs IF Polonia Warsaw Dinaburg Keflavík Zestaponi | Nõmme Kalju Mika Lisburn Distillery Budućnost Podgorica Valletta |
| Group 4 | Group 4 | Group 5 | Group 5 | | |
| Seeded | Unseeded | Seeded | Unseeded | | |
| Motherwell Spartak Trnava Rudar Velenje Široki Brijeg | Inter Baku Narva Trans Banants Llanelli | Randers Bnei Yehuda Dinamo Minsk Fram | Renova Simurq The New Saints Linfield | | |

### Summary

The first legs were played on 2 July, and the second legs were played on 9 July 2009.
| Team 1 | Agg. Tooltip Aggregate score | Team 2 | 1st leg | 2nd leg |
| Sutjeska | 2–3 | MTZ-RIPO Minsk | 1–1 | 1–2 (a.e.t.) |
| Lahti | 4–3 | Dinamo Tirana | 4–1 | 0–2 |
| Grevenmacher | 0–6 | Vėtra | 0–3 | 0–3 |
| NSÍ | 1–6 | Rosenborg | 0–3 | 1–3 |
| Haladás | 2–2 (a) | Irtysh | 1–0 | 1–2 |
| Sligo Rovers | 2–3 | Vllaznia | 1–2 | 1–1 |
| Olimpi Rustavi | 4–0 | B36 | 2–0 | 2–0 |
| Anorthosis Famagusta | 7–1 | Käerjéng 97 | 5–0 | 2–1 |
| Slaven Belupo | 1–0 | Birkirkara | 1–0 | 0–0 |
| Zimbru Chișinău | 3–2 | Okzhetpes | 1–2 | 2–0 |
| Lisburn Distillery | 1–11 | Zestaponi | 1–5 | 0–6 |
| Helsingborgs IF | 4–2 | Mika | 3–1 | 1–1 |
| Valletta | 5–2 | Keflavík | 3–0 | 2–2 |
| Dinaburg | 2–1 | Nõmme Kalju | 2–1 | 0–0 |
| Budućnost Podgorica | 1–2 | Polonia Warsaw | 0–2 | 1–0 |
| Narva Trans | 1–6 | Rudar Velenje | 0–3 | 1–3 |
| Motherwell | 3–1 | Llanelli | 0–1 | 3–0 |
| Banants | 1–2 | Široki Brijeg | 0–2 | 1–0 |
| Spartak Trnava | 5–2 | Inter Baku | 2–1 | 3–1 |
| Dinamo Minsk | 3–2 | Renova | 2–1 | 1–1 |
| Randers | 7–0 | Linfield | 4–0 | 3–0 |
| Simurq | 0–4 | Bnei Yehuda | 0–1 | 0–3 |
| Fram | 4–2 | The New Saints | 2–1 | 2–1 |
* 1 2 3 4 5 6 Order of legs reversed after original draw

### Matches

Olimpi Rustavi won 4–0 on aggregate.
Bnei Yehuda won 4–0 on aggregate.
Dinaburg won 2–1 on aggregate.
Široki Brijeg won 2–1 on aggregate.
MTZ-RIPO Minsk won 3–2 on aggregate.
Lahti won 4–3 on aggregate.
Valletta won 5–2 on aggregate.
Zimbru Chișinău won 3–2 on aggregate.
Dinamo Minsk won 3–2 on aggregate.
Rudar Velenje won 6–1 on aggregate.
2–2 on aggregate; Haladás won on away goals.
Spartak Trnava won 5–2 on aggregate.
Slaven Belupo won 1–0 on aggregate.
Vėtra won 6–0 on aggregate.
Anorthosis Famagusta won 7–1 on aggregate.
Randers won 7–0 on aggregate.
Rosenborg won 6–1 on aggregate.
Vllaznia won 3–2 on aggregate.
Fram won 4–2 on aggregate.
Polonia Warsaw won 2–1 on aggregate.
Zestaponi won 11–1 on aggregate.
Helsingborgs IF won 4–2 on aggregate.
Motherwell won 3–1 on aggregate.

## Second qualifying round
### Seeding

The draw for the second qualifying round was held on 22 June 2009, immediately after the first qualifying round draw. Clubs were separated into seeded and unseeded teams based on their club coefficient. Teams with a coefficient of at least 1.958 were seeded, except Lahti, the lowest ranked of the teams from Finland. As the draw for the second qualifying round took place before the first qualifying round was completed, the teams were seeded assuming the seeded side in the previous round would be victorious.
| Seeded | Seeded | Seeded | Seeded | Unseeded | Unseeded | Unseeded | Unseeded |
| Steaua București Basel Galatasaray Rosenborg AaB Red Star Belgrade Anorthosis Famagusta Brøndby Metalurh Donetsk Helsingborgs IF | Žilina Tromsø Rapid Wien Paços de Ferreira NAC Breda AEL IF Elfsborg Falkirk Motherwell Cherno More | Gent Randers Sigma Olomouc Legia Warsaw Sturm Graz Dinamo Tbilisi Sevojno Maccabi Netanya Bnei Yehuda Omonia | Spartak Trnava St Patrick's Athletic Derry City HIT Gorica Polonia Warsaw Rijeka Slaven Belupo Rabotnicki Honka HJK | Lahti Kaunas Sūduva Vėtra Vllaznia Liepājas Metalurgs Skonto Dinaburg Rudar Velenje Naftan Novopolotsk | Dinamo Minsk MTZ-RIPO Minsk Slavija Sarajevo Široki Brijeg Újpest Haladás Dacia Chișinău Iskra-Stal Zimbru Chișinău | KR Valletta Fram Olimpi Rustavi Zestaponi Vaduz Milano Qarabağ Flamurtari Flora | Tobol Gandzasar Kapan Bangor City Crusaders HB Differdange 03 Petrovac FC Santa Coloma Sliema Wanderers Juvenes/Dogana |

#### Notes

* $^†$ Winners of the first qualifying round, whose identity was not known at the time of draw. Teams in italics defeated a team with a higher coefficient, thus effectively taking the coefficient of their opponent in the draw.

### Summary

The first legs were played on 14 and 16 July, and the second legs were played on 23 July 2009.
Both the first and second legs between Bnei Yehuda and Dinaburg and between Rapid Wien and Vllaznia were under investigation by UEFA and German authorities for possible match-fixing.
| Team 1 | Agg. Tooltip Aggregate score | Team 2 | 1st leg | 2nd leg |
| Rosenborg | 0–1 | Qarabağ | 0–0 | 0–1 |
| Zimbru Chișinău | 0–1 | Paços de Ferreira | 0–0 | 0–1 |
| Juvenes/Dogana | 0–5 | Polonia Warsaw | 0–1 | 0–4 |
| Sturm Graz | 3–2 | Široki Brijeg | 2–1 | 1–1 |
| Basel | 7–1 | FC Santa Coloma | 3–0 | 4–1 |
| Honka | 3–0 | Bangor City | 2–0 | 1–0 |
| Žilina | 3–0 | Dacia Chișinău | 2–0 | 1–0 |
| Anorthosis Famagusta | 3–4 | Petrovac | 2–1 | 1–3 (a.e.t.) |
| St Patrick's Athletic | 2–1 | Valletta | 1–1 | 1–0 |
| Omonia | 8–1 | HB | 4–0 | 4–1 |
| HIT Gorica | 1–2 | Lahti | 1–0 | 0–2 |
| Sigma Olomouc | 3–1 | Fram | 1–1 | 2–0 |
| Legia Warsaw | 4–0 | Olimpi Rustavi | 3–0 | 1–0 |
| Falkirk | 1–2 | Vaduz | 1–0 | 0–2 (a.e.t.) |
| IF Elfsborg | 3–0 | Haladás | 3–0 | 0–0 |
| Rapid Wien | 8–0 | Vllaznia | 5–0 | 3–0 |
| Naftan Novopolotsk | 2–2 (a) | Gent | 2–1 | 0–1 |
| Liepājas Metalurgs | 3–4 | Dinamo Tbilisi | 2–1 | 1–3 |
| Differdange 03 | 1–3 | Rijeka | 1–0 | 0–3 |
| Sūduva | 1–2 | Randers | 0–1 | 1–1 |
| Vėtra | 3–2 | HJK | 0–1 | 3–1 |
| Milano | 2–12 | Slaven Belupo | 0–4 | 2–8 |
| Dinamo Minsk | 1–4 | Tromsø | 0–0 | 1–4 |
| KR | 3–1 | AEL | 2–0 | 1–1 |
| Brøndby | 4–2 | Flora | 0–1 | 4–1 |
| AaB | 1–3 | Slavija | 0–0 | 1–3 |
| Steaua București | 4–1 | Újpest | 2–0 | 2–1 |
| Metalurh Donetsk | 5–1 | MTZ-RIPO Minsk | 3–0 | 2–1 |
| Crusaders | 3–5 | Rabotnicki | 1–1 | 2–4 |
| Bnei Yehuda | 5–0 | Dinaburg | 4–0 | 1–0 |
| NAC Breda | 8–0 | Gandzasar Kapan | 6–0 | 2–0 |
| Cherno More | 4–0 | Iskra-Stal | 1–0 | 3–0 |
| Sevojno | 1–1 (a) | Kaunas | 0–0 | 1–1 |
| Flamurtari | 2–8 | Motherwell | 1–0 | 1–8 |
| Zestaponi | 3–4 | Helsingborgs IF | 1–2 | 2–2 (a.e.t.) |
| Skonto | 1–2 | Derry City | 1–1 | 0–1 |
| Sliema Wanderers | 0–3 | Maccabi Netanya | 0–0 | 0–3 |
| Tobol | 1–3 | Galatasaray | 1–1 | 0–2 |
| Rudar Velenje | 0–5 | Red Star Belgrade | 0–1 | 0–4 |
| Sarajevo | 2–1 | Spartak Trnava | 1–0 | 1–1 |
* 1 2 3 Order of legs reversed after original draw

### Matches

Maccabi Netanya won 3–0 on aggregate.
Rabotnicki won 5–3 on aggregate.
Helsingborgs IF won 4–3 on aggregate.
Slaven Belupo won 12–2 on aggregate.
2–2 on aggregate; Gent won on away goals.
Žilina won 3–0 on aggregate.
Motherwell won 8–2 on aggregate.
Dinamo Tbilisi won 4–3 on aggregate.
1–1 on aggregate; Sevojno won on away goals.
Tromsø won 4–1 on aggregate.
Honka won 3–0 on aggregate.
Metalurh Donetsk won 5–1 on aggregate.
Galatasaray won 3–1 on aggregate.
Paços de Ferreira won 1–0 on aggregate.
Derry City won 2–1 on aggregate.
Bnei Yehuda won 5–0 on aggregate.
Qarabağ won 1–0 on aggregate.
Petrovac won 4–3 on aggregate.
Vėtra won 3–2 on aggregate.
Randers won 2–1 on aggregate.
IF Elfsborg won 3–0 on aggregate.
Cherno More won 4–0 on aggregate.
Sigma Olomouc won 3–1 on aggregate.
Rapid Wien won 8–0 on aggregate.
Sturm Graz won 3–2 on aggregate.
Basel won 7–1 on aggregate.
Steaua București won 4–1 on aggregate.
Omonia won 8–1 on aggregate.
Slavija won 3–1 on aggregate.
Legia Warsaw won 4–0 on aggregate.
Lahti won 2–1 on aggregate.
Rijeka won 3–1 on aggregate.
Red Star Belgrade won 5–0 on aggregate.
Brøndby won 4–2 on aggregate.
Sarajevo won 2–1 on aggregate.
Polonia Warsaw won 5–0 on aggregate.
Vaduz won 2–1 on aggregate.
NAC Breda won 8–0 on aggregate.
Brøndby won 4–2 on aggregate.
KR won 3–1 on aggregate.

## Third qualifying round
### Seeding

The draw for the third qualifying round was held on 17 July 2009. Clubs were separated into seven groups of seeded and unseeded teams based on their club coefficient; teams with a coefficient of at least 7.826 were seeded. As the draw for the third qualifying round took place before the second qualifying round was completed, the teams were seeded assuming the seeded side in the previous round would be victorious. As a result, Qarabağ, Petrovac and Slavija were also seeded as they beat teams who would have been seeded.
| Group 1 | Group 1 | Group 2 | Group 2 | Group 3 | Group 3 | Group 4 | Group 4 |
| Seeded | Unseeded | Seeded | Unseeded | Seeded | Unseeded | Seeded | Unseeded |
| Roma Metalist Kharkiv Lech Poznań Helsingborgs IF Vaslui | Gent Fredrikstad Omonia Sarajevo Rijeka | PSV Eindhoven Slavija Hapoel Tel Aviv Metalurh Donetsk PAOK | Cherno More Vålerenga IFK Göteborg Košice Interblock | Hamburger SV Qarabağ Slovan Liberec Krylia Sovetov Samara Rapid Wien | Vaduz Randers APOP Kinyras St Patrick's Athletic Honka | Steaua București Austria Wien CSKA Sofia Brøndby Tromsø | Motherwell Legia Warsaw Vojvodina Derry City Slaven Belupo |
| Group 5 | Group 5 | Group 6 | Group 6 | Group 7 | Group 7 | | |
| Seeded | Unseeded | Seeded | Unseeded | Seeded | Unseeded | | |
| Lille Braga Odense Aberdeen Žilina | IF Elfsborg Sigma Olomouc Sevojno Hajduk Split Rabotnicki | Fenerbahçe Club Brugge Athletic Bilbao Petrovac Paços de Ferreira | Young Boys Sturm Graz Bnei Yehuda Lahti Honvéd | Basel Galatasaray Fulham Red Star Belgrade NAC Breda | KR Dinamo Tbilisi Maccabi Netanya Polonia Warsaw Vėtra | | |

#### Notes

* $^†$ Winners of the second qualifying round, whose identity was not known at the time of draw. Teams in italics defeated a team with a higher coefficient, thus effectively taking the coefficient of their opponent in the draw.

### Summary

The first legs were played on 28 and 30 July, and the second legs were played on 4 and 6 August 2009.
The first leg between Fenerbahçe and Honvéd and the second leg between Interblock and Metalurh Donetsk were under investigation by UEFA and German authorities for possible match-fixing.
| Team 1 | Agg. Tooltip Aggregate score | Team 2 | 1st leg | 2nd leg |
| Helsingborgs IF | 3–3 (4–5 p) | Sarajevo | 2–1 | 1–2 (a.e.t.) |
| Fredrikstad | 3–7 | Lech Poznań | 1–6 | 2–1 |
| Rijeka | 1–4 | Metalist Kharkiv | 1–2 | 0–2 |
| Roma | 10–2 | Gent | 3–1 | 7–1 |
| Vaslui | 3–1 | Omonia | 2–0 | 1–1 |
| Slavija | 1–5 | Košice | 0–2 | 1–3 |
| IFK Göteborg | 2–4 | Hapoel Tel Aviv | 1–3 | 1–1 |
| PSV Eindhoven | 2–0 | Cherno More | 1–0 | 1–0 |
| Metalurh Donetsk | 5–0 | Interblock | 2–0 | 3–0 |
| Vålerenga | 2–2 (a) | PAOK | 1–2 | 1–0 |
| Rapid Wien | 4–3 | APOP Kinyras | 2–1 | 2–2 (a.e.t.) |
| Honka | 1–3 | Qarabağ | 0–1 | 1–2 |
| Vaduz | 0–3 | Slovan Liberec | 0–1 | 0–2 |
| St Patrick's Athletic | 3–3 (a) | Krylia Sovetov Samara | 1–0 | 2–3 |
| Randers | 1–4 | Hamburger SV | 0–4 | 1–0 |
| Tromsø | 4–1 | Slaven Belupo | 2–1 | 2–0 |
| Brøndby | 3–3 (a) | Legia Warsaw | 1–1 | 2–2 |
| Vojvodina | 3–5 | Austria Wien | 1–1 | 2–4 |
| CSKA Sofia | 2–1 | Derry City | 1–0 | 1–1 |
| Steaua București | 6–1 | Motherwell | 3–0 | 3–1 |
| Žilina | 2–1 | Hajduk Split | 1–1 | 1–0 |
| Braga | 1–4 | IF Elfsborg | 1–2 | 0–2 |
| Aberdeen | 1–8 | Sigma Olomouc | 1–5 | 0–3 |
| Rabotnicki | 3–7 | Odense | 3–4 | 0–3 |
| Sevojno | 0–4 | Lille | 0–2 | 0–2 |
| Petrovac | 1–7 | Sturm Graz | 1–2 | 0–5 |
| Fenerbahçe | 6–2 | Honvéd | 5–1 | 1–1 |
| Bnei Yehuda | 2–0 | Paços de Ferreira | 1–0 | 1–0 |
| Club Brugge | 4–3 | Lahti | 3–2 | 1–1 |
| Athletic Bilbao | 2–2 (a) | Young Boys | 0–1 | 2–1 |
| KR | 3–5 | Basel | 2–2 | 1–3 |
| Maccabi Netanya | 1–10 | Galatasaray | 1–4 | 0–6 |
| Dinamo Tbilisi | 4–5 | Red Star Belgrade | 2–0 | 2–5 |
| Polonia Warsaw | 1–4 | NAC Breda | 0–1 | 1–3 |
| Vėtra | 0–6 | Fulham | 0–3 | 0–3 |
* 1 2 3 4 Order of legs reversed after original draw

### Matches

Bnei Yehuda won 2–0 on aggregate.
Red Star Belgrade won 5–4 on aggregate.
Odense won 7–3 on aggregate.
Sturm Graz won 7–1 on aggregate.
Qarabağ won 3–1 on aggregate.
Galatasaray won 10–1 on aggregate.
Lech Poznań won 7–3 on aggregate.
Hapoel Tel Aviv won 4–2 on aggregate.
Tromsø won 4–1 on aggregate.
CSKA Sofia won 2–1 on aggregate.
3–3 on aggregate; Brøndby won on away goals.
Metalurh Donetsk won 5–0 on aggregate.
2–2 on aggregate; PAOK won on away goals.
Fulham won 6–0 on aggregate.
Austria Wien won 5–3 on aggregate.
Rapid Wien won 4–3 on aggregate.
Slovan Liberec won 3–0 on aggregate.
Žilina won 2–1 on aggregate.
Steaua București won 6–1 on aggregate.
Vaslui won 3–1 on aggregate.
NAC Breda won 4–1 on aggregate.
Košice won 5–1 on aggregate.
Club Brugge won 4–3 on aggregate.
Hamburger SV won 4–1 on aggregate.
Sigma Olomouc won 8–1 on aggregate.
Qarabağ won 3–1 on aggregate.
PSV Eindhoven won 2–0 on aggregate.
Lille won 4–0 on aggregate.
Fenerbahçe won 6–2 on aggregate.
3–3 on aggregate; Sarajevo won 5–4 on penalties.
Roma won 10–2 on aggregate.
Metalist Kharkiv won 4–1 on aggregate.
Basel won 5–3 on aggregate.
2–2 on aggregate; Athletic Bilbao won on away goals.
IF Elfsborg won 4–1 on aggregate.

## Play-off round
### Seeding

The draw for the play-off round was held on 7 August 2009. For the draw, clubs were separated into eight groups of seeded and unseeded teams based on their club coefficient. Teams with a coefficient of at least 12.890 were seeded.
| Group 1 | Group 1 | Group 2 | Group 2 | Group 3 | Group 3 | Group 4 | Group 4 |
| Seeded | Unseeded | Seeded | Unseeded | Seeded | Unseeded | Seeded | Unseeded |
| Werder Bremen Everton Heerenveen Dinamo Zagreb Litex Lovech | Heart of Midlothian PAOK BATE Borisov Sigma Olomouc Aktobe | Villarreal Club Brugge Galatasaray Hapoel Tel Aviv Fulham | Lech Poznań Amkar Perm NAC Breda Teplice Levadia Tallinn | Roma Lille Austria Wien Twente CSKA Sofia | Metalurh Donetsk Dynamo Moscow Genk Košice Qarabağ | PSV Eindhoven Basel Lazio Partizan Toulouse | Trabzonspor Žilina IF Elfsborg Bnei Yehuda Baku |
| Group 5 | Group 5 | Group 6 | Group 6 | Group 7 | Group 7 | Group 8 | Group 8 |
| Seeded | Unseeded | Seeded | Unseeded | Seeded | Unseeded | Seeded | Unseeded |
| Shakhtar Donetsk Ajax Hertha BSC Athletic Bilbao CFR Cluj | Brøndby Tromsø Sivasspor Slovan Bratislava Sarajevo | Zenit Saint Petersburg Steaua București Sparta Prague Aston Villa Odense | Genoa Rapid Wien Nacional St Patrick's Athletic Maribor | Hamburger SV Fenerbahçe Dinamo București Metalist Kharkiv | Slovan Liberec Guingamp Sion Sturm Graz | Benfica Valencia AEK Athens Slavia Prague | Red Star Belgrade Vaslui Vorskla Poltava Stabæk |

### Summary

The first legs were played on 20 August, and the second legs were played on 25 and 27 August 2009.
| Team 1 | Agg. Tooltip Aggregate score | Team 2 | 1st leg | 2nd leg |
| PAOK | 1–1 (a) | Heerenveen | 1–1 | 0–0 |
| Dinamo Zagreb | 4–2 | Heart of Midlothian | 4–0 | 0–2 |
| Werder Bremen | 8–3 | Aktobe | 6–3 | 2–0 |
| Everton | 5–1 | Sigma Olomouc | 4–0 | 1–1 |
| BATE Borisov | 4–1 | Litex Lovech | 0–1 | 4–0 (a.e.t.) |
| NAC Breda | 2–9 | Villarreal | 1–3 | 1–6 |
| Lech Poznań | 1–1 (3–4 p) | Club Brugge | 1–0 | 0–1 (a.e.t.) |
| Fulham | 3–2 | Amkar Perm | 3–1 | 0–1 |
| Galatasaray | 6–1 | Levadia Tallinn | 5–0 | 1–1 |
| Teplice | 2–3 | Hapoel Tel Aviv | 1–2 | 1–1 |
| Metalurh Donetsk | 4–5 | Austria Wien | 2–2 | 2–3 (a.e.t.) |
| Twente | 3–1 | Qarabağ | 3–1 | 0–0 |
| Košice | 4–10 | Roma | 3–3 | 1–7 |
| CSKA Sofia | 2–1 | Dynamo Moscow | 0–0 | 2–1 |
| Genk | 3–6 | Lille | 1–2 | 2–4 |
| Bnei Yehuda | 0–2 | PSV Eindhoven | 0–1 | 0–1 |
| Lazio | 3–1 | IF Elfsborg | 3–0 | 0–1 |
| Trabzonspor | 2–3 | Toulouse | 1–3 | 1–0 |
| Partizan | 3–1 | Žilina | 1–1 | 2–0 |
| Baku | 2–8 | Basel | 1–3 | 1–5 |
| Ajax | 7–1 | Slovan Bratislava | 5–0 | 2–1 |
| Sivasspor | 0–5 | Shakhtar Donetsk | 0–3 | 0–2 |
| Brøndby | 3–4 | Hertha BSC | 2–1 | 1–3 |
| Athletic Bilbao | 4–3 | Tromsø | 3–2 | 1–1 |
| Sarajevo | 2–3 | CFR Cluj | 1–1 | 1–2 |
| Rapid Wien | 2–2 (a) | Aston Villa | 1–0 | 1–2 |
| Steaua București | 5–1 | St Patrick's Athletic | 3–0 | 2–1 |
| Maribor | 0–3 | Sparta Prague | 0–2 | 0–1 |
| Nacional | 5–4 | Zenit Saint Petersburg | 4–3 | 1–1 |
| Genoa | 4–2 | Odense | 3–1 | 1–1 |
| Dinamo București | 3–3 (9–8 p) | Slovan Liberec | 0–3 | 3–0 (a.e.t.) |
| Guingamp | 2–8 | Hamburger SV | 1–5 | 1–3 |
| Sion | 2–4 | Fenerbahçe | 0–2 | 2–2 |
| Sturm Graz | 2–1 | Metalist Kharkiv | 1–1 | 1–0 |
| Slavia Prague | 4–2 | Red Star Belgrade | 3–0 | 1–2 |
| Benfica | 5–2 | Vorskla Poltava | 4–0 | 1–2 |
| Vaslui | 2–4 | AEK Athens | 2–1 | 0–3 |
| Stabæk | 1–7 | Valencia | 0–3 | 1–4 |
* 1 2 3 4 5 Order of legs reversed after original draw.
* ↑ The match was abandoned at 0–2 in the 88th minute after one Dinamo București fan entered the playing field and other fans invaded the running track around the pitch. The UEFA Control and Disciplinary Body awarded a default 0–3 defeat against Dinamo during an emergency meeting on 25 August. After advancing to the group stage, Dinamo were punished by having their first two home matches in the group stage played behind closed doors.

### Matches

Roma won 10–4 on aggregate.
Basel won 8–2 on aggregate.
BATE Borisov won 4–1 on aggregate.
Hapoel Tel Aviv won 3–2 on aggregate.
PSV Eindhoven won 2–0 on aggregate.
Hamburger SV won 8–2 on aggregate.
Toulouse won 3–2 on aggregate.
CSKA Sofia won 2–1 on aggregate.
Austria Wien won 5–4 on aggregate.
Villarreal won 9–2 on aggregate.
1–1 on aggregate; Heerenveen won on away goals.
2–2 on aggregate; Rapid Wien won on away goals.
Sturm Graz won 2–1 on aggregate.
Steaua București won 5–1 on aggregate.
3–3 on aggregate; Dinamo București won 9–8 on penalties.
Shakhtar Donetsk won 5–0 on aggregate.
Slavia Prague won 4–2 on aggregate.
Twente won 3–1 on aggregate.
AEK Athens won 4–2 on aggregate.
Partizan won 3–1 on aggregate.
CFR Cluj won 3–2 on aggregate.
Hertha BSC won 4–3 on aggregate.
1–1 on aggregate; Club Brugge won 4–3 on penalties.
Fenerbahçe won 4–2 on aggregate.
Ajax won 7–1 on aggregate.
Benfica won 5–2 on aggregate.
Galatasaray won 6–1 on aggregate.
Genoa won 4–2 on aggregate.
Lazio won 3–1 on aggregate.
Sparta Prague won 3–0 on aggregate.
Lille won 6–3 on aggregate.
Dinamo Zagreb won 4–2 on aggregate.
Everton won 5–1 on aggregate.
Fulham won 3–2 on aggregate.
Valencia won 7–1 on aggregate.
Werder Bremen won 8–3 on aggregate.
Nacional won 5–4 on aggregate.
Athletic Bilbao won 4–3 on aggregate.