# List of databases for oncogenomic research

Databases for oncogenomic research are biological databases dedicated to cancer data and oncogenomic research. They can be a primary source of cancer data, offer a certain level of analysis (processed data) or even offer online data mining.

## List

The table below gives an overview of databases for that serve specifically for oncogenomic research. Note that this is not a comprehensive list and does not contain databases that have a generic focus. You may find databases containing cancer data among the List of biological databases or Microarray databases.
| Database | Institute / Organization | Alteration Types | Primary Source | Processed Data | Organisms | Cell lines | Public Data | Restricted Data |
| The BioExpress® Oncology Suite from Ocimum Bio Solutions contains gene expression data from primary, metastatic, and benign tumor samples, and normal samples, including matched adjacent controls. (BioExpress Oncology Suite) → | Ocimum Bio Solutions, United States | Gene Expression | Yes | Yes | Human, Rat and Mouse | Yes | No | Yes |
| ClinicalTrials.gov contains descriptions and some results from clinical trials, many of which are genomically targeted. → | National Institutes of Health, United States | Various | Yes | Yes | Human | No | Yes | No |
| Project Data Sphere from The CEO Life Sciences Consortium allows researchers to share, integrate, and analyze de-identified patient-level, comparator arm, phase III cancer data. → | The CEO Life Sciences Consortium, United States | Various | No | Yes | Human | No | Yes | Yes |
| Catalogue Of Somatic Mutations In Cancer (COSMIC) → | Wellcome Trust Sanger Institute, UK | Mutation | No | Yes | Human | Yes | Yes | Yes |
| cBio Cancer Genomics Portal → | Memorial Sloan-Kettering Cancer Center, United States | Copy number, Mutation, Methylation, Gene Expression, miRNA Expression, Protein, Phosphorylation | No | Yes | Human | No | Yes | No |
| International Cancer Genome Consortium → | Worldwide | Mutation | Yes | Yes | Human | No | Yes | Yes |
| Integrative Oncogenomics Cancer Browser (IntOGen) → | Universitat Pompeu Fabra, Spain | Copy number, Mutation, Gene Expression | No | Yes | Human | No | Yes | No |
| Mouse Retrovirus Tagged Cancer Gene Database → | Institute of Molecular and Cell Biology, Singapore | Mutations | Yes | Yes | Mouse | No | Yes | No |
| Mouse Tumor Biology Database → | The Jackson Laboratory, United States | Copy number, Mutation, Methylation, Gene Expression | No | No | Mouse | No | No | No |
| OncoDB.HCC → | Academia Sinica, Taiwan | Copy number, Gene Expression, QTL | No | Yes | Human, Mouse, Rat | No | Yes | No |
| Genevestigator → contains data from numerous public repositories including GEO and renowned cancer research projects as TCGA. | Nebion AG, Switzerland | Gene Expression | No | Yes | Human, Mouse, Rat, Monkey, Dog and others | Yes | Yes | Yes |
| OncoLand from Omicsoft Corporation contains data from large-scale Genomic projects, include TCGA, ICGC and others] | Omicsoft Corporation, United States | Copy number, Mutation, Methylation, Gene Expression, miRNA Expression, Protein, Phosphorylation | Yes | Yes | Human, Rat and Mouse | Yes | Yes | Yes |
| Oncomine → | Compendia Bioscience, Inc., United States | Gene Expression | No | Yes | Human | Yes | No | Yes |
| Oncoreveal → | Boğaziçi University, Turkey | Gene Expression | No | Yes | Human | No | Yes | No |
| Progenetix → | Universität Zürich, Switzerland | Copy number | No | Yes | Human | Yes | Yes | No |
| The Cancer Genome Atlas → | National Cancer Institute, United States | Copy number, Mutation, Methylation, Gene Expression, miRNA expression | Yes | Yes | Human | No | Yes | Yes |
| CancerResource → | University Medicine Berlin, Germany | | | | | | | |
| Roche Cancer Genome Database (RCGDB) | Roche Diagnostics, Penzberg, Germany | | | | | | | |
| Network of Cancer Genes → | King's College London, UK | Mutation | No | Yes | Human | No | Yes | No |
| MutaGene | NCBI, NIH, USA | Mutation | No | Yes | Human | No | Yes | No |