# List of Historic Sites of Japan (Nagasaki)

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This list is of the Historic Sites of Japan located within the Prefecture of Nagasaki.

## National Historic Sites

As of 27 January 2025, thirty-four Sites have been designated as being of national significance (including three *Special Historic Sites).
| Site | Municipality | Comments | Image | Coordinates | Type | Ref. |
| *Kaneda Castle ruins 金田城跡 Kaneda-jō ato | Tsushima | Asuka period fortification | Kaneda Castle ruins | 34°17′48″N 129°16′22″E﻿ / ﻿34.29677303°N 129.2727069°E﻿ / 34.29677303; 129.2727069﻿ (Kaneda Castle ruins) | 2 | 2782 |
| *Harunotsuji Site 原の辻遺跡 Harunotsuji iseki | Iki | Yayoi period settlement trace | Harunotsuji ruins | 33°45′32″N 129°45′07″E﻿ / ﻿33.75878417°N 129.75186114°E﻿ / 33.75878417; 129.75186114﻿ (Harunotsuji ruins) | 1 | 2791 |
| *Fukui Caves 福井洞窟 Fukui dōkutsu | Sasebo | Japanese Paleolithic site, elevated in 2024 to a Special National Historic Site | Fukui Caves | 33°17′31″N 129°41′49″E﻿ / ﻿33.29205287°N 129.69681088°E﻿ / 33.29205287; 129.69681088﻿ (Fukui Caves) | 1 | 2778 |
| Siebold Residence Site シーボルト宅跡 Shīboruto taku ato | Nagasaki | former residence of Philipp Franz von Siebold in Nagasaki, now part of the Siebold Memorial Museum | Siebold Residence Site | 32°45′20″N 129°53′32″E﻿ / ﻿32.75548578°N 129.89224447°E﻿ / 32.75548578; 129.89224447﻿ (Siebold Residence Site) | 9 | 2740 |
| Hogetto Stone Vessel Production Site ホゲット石鍋製作遺跡 Hogetto ishinabe seisaku iseki | Saikai | Kamakura period stone bowl production site | | 32°57′03″N 129°41′29″E﻿ / ﻿32.95081529°N 129.69129776°E﻿ / 32.95081529; 129.69129776﻿ (Hogetto Stone Vessel Production Site) | 6 | 2781 |
| Iki Kofun Cluster 壱岐古墳群 Iki kofun-gun | Iki | Kofun period tumuli cluster | Iki Kofun Cluster | 33°48′09″N 129°42′02″E﻿ / ﻿33.802455°N 129.700685°E﻿ / 33.802455; 129.700685﻿ (Iki Kofun Cluster) | 1 | 00003625 |
| Kirishitan Tombstones 吉利支丹墓碑 Kirishitan bohi | Minamishimabara | Edo Period | Kirishitan Tombstones | 32°39′10″N 130°17′48″E﻿ / ﻿32.6527215°N 130.296631°E﻿ / 32.6527215; 130.296631﻿ (Kirishitan Tombstones) | 7 | 2763 |
| Shimabara Domain Physic Garden Site 旧島原藩薬園跡 kyū-Shimabara-han yakuen ato | Shimabara | Edo Period medicinal plant garden | | 32°47′07″N 130°21′07″E﻿ / ﻿32.78531891°N 130.35185971°E﻿ / 32.78531891; 130.35185971﻿ (Shimabara Domain Physic Garden) | 5 | 2752 |
| Magarizaki Kofun Cluster 曲崎古墳群 Magarizaki kofun-gun | Nagasaki | Kofun period tumuli cluster | | 32°45′06″N 129°59′18″E﻿ / ﻿32.75169461°N 129.98835295°E﻿ / 32.75169461; 129.98835295﻿ (Magarizaki Kofun Cluster) | 1 | 2779 |
| Kaneishi Castle 金石城跡 Kaneishi-jō ato | Tsushima | Edo Period castle | Kaneishi Castle | 34°12′17″N 129°17′03″E﻿ / ﻿34.20464289°N 129.28419255°E﻿ / 34.20464289; 129.28419255﻿ (Kaneishi Castle) | 2 | 2790 |
| Harayama Dolmen Cluster 原山支石墓群 Harayama shisekibo-gun | Minamishimabara | Jōmon Period cemetery | | 32°40′46″N 130°12′26″E﻿ / ﻿32.67950892°N 130.20709522°E﻿ / 32.67950892; 130.20709522﻿ (Harayama Dolmen Cluster) | 1 | 2771 |
| Hara Castle ruins 原城跡 Hara-jō ato | Minamishimabara | Edo Period castle ruins; inscribed on the UNESCO World Heritage List as one of the Hidden Christian Sites in the Nagasaki Region | Hara Castle ruins | 32°37′47″N 130°15′13″E﻿ / ﻿32.62971008°N 130.25372669°E﻿ / 32.62971008; 130.25372669﻿ (Hara Castle ruins) | 8 | 2754 |
| Takashima Shūhan residence 高島秋帆旧宅 Takashima Shūhan kyū-taku | Nagasaki | Bakumatsu period military theorist and patriot | | 32°44′22″N 129°52′56″E﻿ / ﻿32.7394497°N 129.88224182°E﻿ / 32.7394497; 129.88224182﻿ (Takashima Shūhan Former Residence) | 8 | 2737 |
| Takashima Coal Mine Sites 高島炭鉱跡 Takashima tankō ato | Nagasaki | Meiji period industrial site, designation includes the sites of Takashima Hokkei Well Shaft (高島北渓井坑跡), Nakanoshima Mine (中ノ島炭坑跡), and Hashima Mine (端島炭坑跡); inscribed on the UNESCO World Heritage List as among the Sites of Japan’s Meiji Industrial Revolution: Iron and Steel, Shipbuilding and Coal Mining | Takashima Coal Mines | 32°45′01″N 129°52′40″E﻿ / ﻿32.75025555°N 129.87780277°E﻿ / 32.75025555; 129.87780277﻿ (Takashima Coal Mines) | 6 | 00003864 |
| Neso Kofun Cluster 根曽古墳群 Neso Kofun-gun | Tsushima | Kofun period tumuli cluster | Neso Kofun Cluster | 34°15′43″N 129°19′26″E﻿ / ﻿34.2618448°N 129.32391106°E﻿ / 34.2618448; 129.32391106﻿ (Neso Kofun Cluster) | 1 | 2773 |
| Dejima Dutch Trading Post 出島和蘭商館跡 Dejima Oranda shōkan ato | Nagasaki | Edo Period Netherlands East India Company trading settlement | Dejima Dutch Trading Post | 32°44′36″N 129°52′23″E﻿ / ﻿32.74347004°N 129.87313698°E﻿ / 32.74347004; 129.87313698﻿ (Dejima Dutch Trading Post) | 9 | 2739 |
| Katsumoto Castle ruins 勝本城跡 Katsumoto-jō ato | Iki | Sengoku period castle ruins | Katsumoto Castle ruins | 33°50′57″N 129°41′28″E﻿ / ﻿33.84918217°N 129.69100997°E﻿ / 33.84918217; 129.69100997﻿ (Katsumoto Castle ruins) | 2 | 3334 |
| Kosuge Slip Dock 小菅修船場跡 Kosuge shūsen-ba ato | Nagasaki | Meiji period industrial site; inscribed on the UNESCO World Heritage List as among the Sites of Japan’s Meiji Industrial Revolution: Iron and Steel, Shipbuilding and Coal Mining | Kosuge Slip Dock | 32°43′38″N 129°51′41″E﻿ / ﻿32.72727736°N 129.86147481°E﻿ / 32.72727736; 129.86147481﻿ (Kosuge Slip Dock) | 6 | 2768 |
| Shimizuyama Castle ruins 清水山城跡 Shimizuyama-jō ato | Tsushima | Sengoku period castle ruins | Shimizuyama Castle ruins | 34°12′28″N 129°17′08″E﻿ / ﻿34.20781913°N 129.28549865°E﻿ / 34.20781913; 129.28549865﻿ (Shimizuyama Castle ruins) | 2 | 2784 |
| Senpukuji Cave 泉福寺洞窟 Senpukuji dōkutsu | Sasebo | Japanese Paleolithic site | Senpukuji Cave | 33°12′16″N 129°43′49″E﻿ / ﻿33.20450628°N 129.73041133°E﻿ / 33.20450628; 129.73041133﻿ (Senpukuji Cave) | 1 | 2788 |
| Tsushima Domain Sō clan cemetery 対馬藩主宗家墓所 Tsushima-han-shu Sō-ke bosho | Tsushima | Edo Period daimyo cemetery | Tsushima Han Sō Clan Graves | 34°12′16″N 129°17′02″E﻿ / ﻿34.20439571°N 129.28382656°E﻿ / 34.20439571; 129.28382656﻿ (Tsushima Han Sō Clan Graves) | 7 | 2785 |
| Ōura Church Precinct 大浦天主堂境内 Ōura tenshudō keidai | Nagasaki | Bakumatsu period cathedral; National Treasure, inscribed on the UNESCO World Heritage List as one of the Hidden Christian Sites in the Nagasaki Region | Ōura Church Precinct | 32°45′01″N 129°52′40″E﻿ / ﻿32.75025555°N 129.87780277°E﻿ / 32.75025555; 129.87780277﻿ (Ōura Church Precinct) | 3, 9 | 3763 |
| Ōmura Domain Ōmura clan cemetery 大村藩主大村家墓所 Ōmura-han-shu Ōmura-ke bosho | Ōmura | Edo Period daimyo cemetery | | 32°55′02″N 129°57′15″E﻿ / ﻿32.91729611°N 129.95426271°E﻿ / 32.91729611; 129.95426271﻿ (Ōmura Domain Ōmura clan cemetery) | 7 | 3408 |
| Ōnodai Dolmen Cluster 大野台支石墓群 Ōnodai shisekibo-gun | Sasebo | Jōmon Period cemetery | Ōnodai Dolmen Cluster | 33°17′55″N 129°37′08″E﻿ / ﻿33.29851005°N 129.61901207°E﻿ / 33.29851005; 129.61901207﻿ (Ōnodai Dolmen Cluster) | 1 | 2786 |
| Takashima Kōzaki Site 鷹島神崎遺跡 Takashima Kōzaki iseki | Matsuura | Underwater site with traces from the Kamakura period Mongol Invasions of Japan | Takashima Kōzaki Site | 33°20′28″N 129°42′33″E﻿ / ﻿33.34119138°N 129.70915°E﻿ / 33.34119138; 129.70915﻿ (Takashima Kōzaki Site) | 2 | 00003771 |
| Nagasaki Atomic Bomb Sites 長崎原爆遺跡 Nagasaki genbaku iseki | Nagasaki | Designation includes "Ground Zero", the former Shiroyama National School Building, old Bell Tower of Urakami Cathedral, gatepost of the Former Nagasaki Medical College & second torii gate of Sanno Shrine | Nagasaki Atomic Bomb Sites | 32°45′01″N 129°52′40″E﻿ / ﻿32.75025555°N 129.87780277°E﻿ / 32.75025555; 129.87780277﻿ (Nagasaki Atomic Bomb Sites) | 2 | 00003956 |
| Nagasaki Battery sites 長崎台場跡 Nagasaki daiba ato | Nagasaki | Bakumatsu period fortifications; designation includes the sites of the Uomidake Battery (魚見岳台場跡) and Shirōgashima Battery (四郎ヶ島台場跡) | | 32°43′05″N 129°51′09″E﻿ / ﻿32.71792317°N 129.85240108°E﻿ / 32.71792317; 129.85240108﻿ (Nagasaki Battery and Uomidake Battery sites) | 2 | 2787 |
| Tōnokubi Site 塔の首遺跡 Tōnokubi iseki | Tsushima | Yayoi period graves | | 34°39′36″N 129°28′13″E﻿ / ﻿34.65988469°N 129.47032576°E﻿ / 34.65988469; 129.47032576﻿ (Tōnokubi Site) | 1 | 2777 |
| Hinoe Castle ruins 日野江城跡 Hinoe-jō ato | Minamishimabara | Sengoku period castle ruins, one of the sites of the early Edo Period Shimabara rebellion | Hinoe Castle ruins | 32°39′35″N 130°15′11″E﻿ / ﻿32.65958475°N 130.25299628°E﻿ / 32.65958475; 130.25299628﻿ (Hinoe Castle ruins) | 2 | 2783 |
| Hizen Hasami Pottery Kiln Sites 肥前波佐見陶磁器窯跡 Hizen Hasami tōjiki kama ato | Hasami | Edo Period pottery kiln ruins | Hizen Hasami Pottery Kiln Sites | 33°08′57″N 129°52′11″E﻿ / ﻿33.14918457°N 129.8698453°E﻿ / 33.14918457; 129.8698453﻿ (Hizen Hasami Pottery Kiln Sites) | 6 | 3265 |
| Hirado Dutch Trading Post 平戸和蘭商館跡 Hirado Oranda shōkan ato | Hirado | Edo Period Netherlands East Indies trading settlement | Hirado Dutch Trading Post | 33°22′22″N 129°33′25″E﻿ / ﻿33.37274627°N 129.55697795°E﻿ / 33.37274627; 129.55697795﻿ (Hirado Dutch Trading Post) | 9 | 2738 |
| Yatateyama Kofun Cluster 矢立山古墳群 Yatateyama kofun-gun | Tsushima | Kofun period tumuli cluster | | 34°13′55″N 129°12′08″E﻿ / ﻿34.23200094°N 129.2021064°E﻿ / 34.23200094; 129.2021064﻿ (Yatateyama Kofun Cluster) | 1 | 2775 |
| Shimabara Castle Site 島原城跡 Shimabara-jō ato | Shimabara | | | 32°47′24″N 130°22′01″E﻿ / ﻿32.790017°N 130.366822°E﻿ / 32.790017; 130.366822﻿ (Shimabara Castle Site) | | |
| Koshitaka Site 越高遺跡 Koshitaka iseki | Tsushima | | | 34°33′02″N 129°19′24″E﻿ / ﻿34.550603°N 129.323236°E﻿ / 34.550603; 129.323236﻿ (Koshitaka Site) | | |

## Prefectural Historic Sites

As of 1 May 2024, ninety-five Sites have been designated as being of prefectural importance.
| Site | Municipality | Comments | Coordinates |
| Uku-matsubara Site 宇久松原遺跡 Uku-matsubara iseki | Sasebo | | 33°15′49″N 129°07′49″E﻿ / ﻿33.263487°N 129.130243°E﻿ / 33.263487; 129.130243﻿ (Uku-matsubara Site) |
| Iki Kokubun-ji Site 壱岐国分寺跡 Iki Kokubunji ato | Iki | provincial temple of Iki Province | 33°48′00″N 129°42′56″E﻿ / ﻿33.800110°N 129.715512°E﻿ / 33.800110; 129.715512﻿ (Iki Kokubunji Site) |
| Sainoyama Kofun サイノヤマ古墳 Sainoyama kofun | Tsushima | | 34°15′41″N 129°18′46″E﻿ / ﻿34.261437°N 129.312848°E﻿ / 34.261437; 129.312848﻿ (Sainoyama Kofun) |
| Iki Province Ankoku-ji Site 壱岐国安国寺跡 Iki-no-kuni Ankokuji ato | Iki | | 33°46′09″N 129°44′55″E﻿ / ﻿33.769302°N 129.748653°E﻿ / 33.769302; 129.748653﻿ (Iki Province Ankokuji Site) |
| Ōtsukayama Kofun 大塚山古墳 Ōtsukayama kofun | Iki | | 33°46′12″N 129°45′00″E﻿ / ﻿33.770033°N 129.750128°E﻿ / 33.770033; 129.750128﻿ (Ōtsukayama Kofun) |
| Tsushima Entsū-ji Sōke Grave Site 対馬円通寺宗家墓地 Tsushima Entsūji sōke bochi | Tsushima | | 34°27′29″N 129°22′16″E﻿ / ﻿34.458031°N 129.371030°E﻿ / 34.458031; 129.371030﻿ (Tsushima Entsūji Sōke Grave Site) |
| Tsushima Domain Shipyard Site 対馬藩お船江跡 Tsushima-han ofunae ato | Tsushima | | 34°11′15″N 129°17′05″E﻿ / ﻿34.187391°N 129.284770°E﻿ / 34.187391; 129.284770﻿ (Tsushima Domain Shipyard Site) |
| Kamenoo Castle Site 亀丘城跡 Kamenoo-jō ato | Iki | | 33°45′00″N 129°41′40″E﻿ / ﻿33.749892°N 129.694537°E﻿ / 33.749892; 129.694537﻿ (Kamenoo Castle Site) |
| Battle of Kōan Setoura Historic Battlefield 弘安の役瀬戸浦古戦場 Kōan-no-eki Setoura kosenjō | Iki | | 33°48′44″N 129°45′47″E﻿ / ﻿33.812092°N 129.763137°E﻿ / 33.812092; 129.763137﻿ (Battle of Kōan Setoura Historic Battlefield) |
| Deizuka Kofun 出居塚古墳 Deizuka kofun | Iki | | 34°15′53″N 129°18′55″E﻿ / ﻿34.264861°N 129.315361°E﻿ / 34.264861; 129.315361﻿ (Deizuka Kofun) |
| Battle of Bun'ei Shinjō Historic Battlefield 文永の役新城古戦場 Bunei-no-eki Shinjō kosenjō | Iki | | 33°50′02″N 129°43′14″E﻿ / ﻿33.833778°N 129.720472°E﻿ / 33.833778; 129.720472﻿ (Battle of Bun'ei Shinjō Historic Battlefield) |
| Ishida Castle Site 石田城跡 Ishita-jō ato | Gotō | | 32°41′34″N 128°50′47″E﻿ / ﻿32.692916°N 128.846455°E﻿ / 32.692916; 128.846455﻿ (Ishita Castle Site) |
| Shirahama Shell Mound 白浜貝塚 Shirahama kaizuka | Gotō | | 32°39′27″N 128°53′02″E﻿ / ﻿32.657542°N 128.883868°E﻿ / 32.657542; 128.883868﻿ (Shirahama Shell Mound) |
| Yamasaki Stone Fortress 富江町・山崎の石塁 Tomie-chō Yamasaki no sekirui | Gotō | | 32°35′14″N 128°45′56″E﻿ / ﻿32.58718°N 128.765612°E﻿ / 32.58718; 128.765612﻿ (Yamasaki Stone Fortress) |
| Hinoshima Stone Pagodas 日島の石塔群 Hinoshima sekitō-gun | Shin-Kamigotō | | 32°54′54″N 128°57′25″E﻿ / ﻿32.915°N 128.956944°E﻿ / 32.915; 128.956944﻿ (Hinoshima Stone Pagodas) |
| Yorigami Shell Mound 寄神貝塚 Yorigami kaizuka | Gotō | | 32°45′50″N 128°45′33″E﻿ / ﻿32.763861°N 128.759222°E﻿ / 32.763861; 128.759222﻿ (Yorigami Shell Mound) |
| Gotō Hexagonal Well 六角井 rokkaku ido | Gotō | | 32°41′49″N 128°50′36″E﻿ / ﻿32.696907°N 128.843451°E﻿ / 32.696907; 128.843451﻿ (Gotō Hexagonal Well) |
| Kawatana Kirishitan Tombstone 川棚町のキリシタン墓碑 Kawatana-chō no kirishitan bohi | Kawatana | | 33°04′22″N 129°51′33″E﻿ / ﻿33.072751°N 129.859284°E﻿ / 33.072751; 129.859284﻿ (Kawatana Kirishitan Tombstone) |
| Sonogi Kofun 彼杵の古墳 Sonogi no kofun | Higashisonogi | | 33°02′09″N 129°55′55″E﻿ / ﻿33.035866°N 129.932041°E﻿ / 33.035866; 129.932041﻿ (Sonogi Kofun) |
| Chieji-Nobori Kiln Site 智惠治登窯跡 Chieji-Nobori gama ato | Hasami | | 33°07′52″N 129°56′29″E﻿ / ﻿33.131111°N 129.941389°E﻿ / 33.131111; 129.941389﻿ (Chieji-Nobori Kiln Site) |
| Hasami Kirishitan Tombstone 波佐見町のキリシタン墓碑群 Hasami-chō no kirishitan bohi | Hasami | | 33°09′22″N 129°56′14″E﻿ / ﻿33.156111°N 129.937194°E﻿ / 33.156111; 129.937194﻿ (Hasami Kirishitan Tombstone) |
| Ichinose Kiln Site 市ノ瀬窯跡 Ichinose kama ato | Saza | | 33°15′06″N 129°39′26″E﻿ / ﻿33.251716°N 129.65716°E﻿ / 33.251716; 129.65716﻿ (Ichinose Kiln Site) |
| Kasamatsu Tenjinsha Kofun 笠松天神社古墳 Kasamatsu Tenjinsha kofun | Hirado | | 33°21′21″N 129°35′32″E﻿ / ﻿33.355876°N 129.592183°E﻿ / 33.355876; 129.592183﻿ (Kasamatsu Tenjinsha Kofun) |
| Kaminosaki Site 神ノ崎遺跡 Kaminosaki iseki | Ojika | | 33°10′57″N 129°03′25″E﻿ / ﻿33.1825°N 129.056944°E﻿ / 33.1825; 129.056944﻿ (Kaminosaki Site) |
| Masutomi Whaling Family Residence 鯨組主益冨家居宅跡 Kujira-gumi-nushi Masutomi-ke kyotaku ato | Hirado | | 33°23′40″N 129°26′07″E﻿ / ﻿33.39452°N 129.435249°E﻿ / 33.39452; 129.435249﻿ (Masutomi Whaling Family Residence) |
| Cocks Sweet Potato Field Site コックスの甘藷畑跡 Kokkusu no kansho hata ato | Hirado | | 33°20′47″N 129°32′20″E﻿ / ﻿33.346361°N 129.53875°E﻿ / 33.346361; 129.53875﻿ (Cocks Sweet Potato Field Site) |
| Saza Tanukiyama Dolmen Cluster 佐々町狸山支石墓群 Saza-chō Tanukiyama shiseki bogun | Saza | | 33°15′46″N 129°39′58″E﻿ / ﻿33.262806°N 129.666083°E﻿ / 33.262806; 129.666083﻿ (Saza Tanukiyama Dolmen Cluster) |
| Satotabaru Site 里田原遺跡 Satotabaru iseki | Hirado | | 33°21′34″N 129°35′31″E﻿ / ﻿33.359325°N 129.592022°E﻿ / 33.359325; 129.592022﻿ (Satotabaru Site) |
| Shijiki Jinja Site 式内社志々伎神社跡 Shikinai-sha Shijiki Jinja ato | Hirado | | 33°14′20″N 129°27′19″E﻿ / ﻿33.238929°N 129.45541°E﻿ / 33.238929; 129.45541﻿ (Shijiki Jinja Site) |
| Sekitokudō Site 積徳堂跡 Sekitokudō ato | Hirado | | 33°21′43″N 129°33′28″E﻿ / ﻿33.361876°N 129.557869°E﻿ / 33.361876; 129.557869﻿ (Sekitokudō Site) |
| Takezaki Kofun 岳崎古墳 Takezaki kofun | Hirado | | 33°22′25″N 129°35′59″E﻿ / ﻿33.373583°N 129.599694°E﻿ / 33.373583; 129.599694﻿ (Takezaki Kofun) |
| Koxinga Residence 鄭成功居宅跡 Teiseikō kyotaku ato | Hirado | | 33°19′50″N 129°31′13″E﻿ / ﻿33.33059°N 129.520346°E﻿ / 33.33059; 129.520346﻿ (Koxinga Residence) |
| Nakano Kiln Site 中野窯跡 Nakano kama ato | Hirado | | 33°19′44″N 129°29′00″E﻿ / ﻿33.328866°N 129.483317°E﻿ / 33.328866; 129.483317﻿ (Nakano Kiln Site) |
| Hirado Hexagonal Well 平戸の六角井戸 Hirado no rokkaku ido | Hirado | | 33°22′22″N 129°33′12″E﻿ / ﻿33.372780°N 129.553218°E﻿ / 33.372780; 129.553218﻿ (Hirado Hexagonal Well) |
| 1592/3 Invasion of Korea Matsura Family Memorial Tō 文禄の役松浦家供養塔 Bunroku no eki Matsura-ke kuyōtō | Matsuura | | 33°21′02″N 129°46′18″E﻿ / ﻿33.350654°N 129.771717°E﻿ / 33.350654; 129.771717﻿ (1592/3 Invasion of Korea Matsura Family Memorial Tō) |
| Kajiya Castle Site 松浦党梶谷城跡 Matsuratō Kajiya-jō ato | Matsuura | | 33°21′06″N 129°47′14″E﻿ / ﻿33.35175°N 129.787306°E﻿ / 33.35175; 129.787306﻿ (Kajiya Castle Site) |
| Arie Onoue Kirishitan Tombstone 有家町尾上のキリシタン墓碑 Arie-chō Onoue no kirishitan bohi | Minamishimabara | | 32°40′39″N 130°18′02″E﻿ / ﻿32.677543°N 130.300516°E﻿ / 32.677543; 130.300516﻿ (Arie Onoue Kirishitan Tombstone) |
| Arie Kogawa Kirishitan Tombstone 有家町小川のキリシタン墓碑 Arie-chō Kogawa no kirishitan bohi | Minamishimabara | | 32°39′29″N 130°18′19″E﻿ / ﻿32.658070°N 130.305204°E﻿ / 32.658070; 130.305204﻿ (Arie Ogawa Kirishitan Tombstone) |
| Arie Nakasukawa Kirishitan Tombstones 有家町中須川のキリシタン墓碑（２基） Arie-chō Nakasukawa no kirishitan bohi | Minamishimabara | 2 graves | 32°39′40″N 130°18′09″E﻿ / ﻿32.661246°N 130.302405°E﻿ / 32.661246; 130.302405﻿ (Arie Nakasukawa Kirishitan Tombstones) |
| Arie Rikino Kirishitan Tombstones 有家町力野のキリシタン墓碑（２基） Arie-chō Rikino no kirishitan bohi | Minamishimabara | 2 graves | 32°40′14″N 130°18′06″E﻿ / ﻿32.670662°N 130.301613°E﻿ / 32.670662; 130.301613﻿ (Arie Rikino Kirishitan Tombstones) |
| Entsū-ji Gate Cornerstones 円通寺門礎石 Entsūji mon soseki | Minamishimabara | | 32°37′43″N 130°10′07″E﻿ / ﻿32.628694°N 130.168611°E﻿ / 32.628694; 130.168611﻿ (Entsūji Gate Cornerstones) |
| Oni-no-Iwaya 鬼の岩屋 Oni-no-iwaya | Unzen | | 32°51′28″N 130°18′22″E﻿ / ﻿32.857885°N 130.306123°E﻿ / 32.857885; 130.306123﻿ (Oni-no-Iwaya) |
| Obama Shīyama Kirishitan Tombstone 小浜町椎山のキリシタン墓碑 Obama-chō Shīyama no kirishitan bohi | Unzen | | 32°41′52″N 130°10′13″E﻿ / ﻿32.697718°N 130.170272°E﻿ / 32.697718; 130.170272﻿ (Obama Shīyama Kirishitan Tombstone) |
| Obama Shigemuta Kirishitan Tombstone 小浜町茂無田のキリシタン墓碑 Obama-chō Shigemuta no kirishitan bohi | Unzen | | 32°42′22″N 130°12′10″E﻿ / ﻿32.706052°N 130.202800°E﻿ / 32.706052; 130.202800﻿ (Obama Shigemuta Kirishitan Tombstone) |
| Obama Dotenomoto Kirishitan Tombstones 小浜町土手之元のキリシタン墓碑（４基） Obama-chō Dotenomoto no kirishitan bohi | Unzen | 4 graves | 32°42′00″N 130°10′31″E﻿ / ﻿32.700014°N 130.175266°E﻿ / 32.700014; 130.175266﻿ (Obama Dotenomoto Kirishitan Tombstones) |
| Kazusa Suzaki Kirishitan Tombstones 加津佐町須崎のキリシタン墓碑（３基） Kazusa-chō Suzaki no kirishitan bohi | Minamishimabara | 3 graves | 32°37′39″N 130°09′46″E﻿ / ﻿32.627556°N 130.162778°E﻿ / 32.627556; 130.162778﻿ (Kazusa Suzaki Kirishitan Tombstones) |
| Kazusa Sahara Kirishitan Tombstones 加津佐町砂原のキリシタン墓碑（２基） Kazusa-chō Sahara no kirishitan bohi | Minamishimabara | 2 graves | 32°37′50″N 130°09′07″E﻿ / ﻿32.630611°N 130.152000°E﻿ / 32.630611; 130.152000﻿ (Kazusa Sahara Kirishitan Tombstones) |
| Kitaarima Saishō-ji Kirishitan Tombstones 北有馬町西正寺のキリシタン墓碑（３基） Kitaarima-chō Saishōji no kirishitan bohi | Minamishimabara | 3 graves | 32°40′21″N 130°13′34″E﻿ / ﻿32.672583°N 130.226111°E﻿ / 32.672583; 130.226111﻿ (Kitaarima Saishōji Kirishitan Tombstones) |
| Kitaarima Tanigawa Kirishitan Tombstone 北有馬町谷川のキリシタン墓碑 Kitaarima-chō Tanigawa no kirishitan bohi | Minamishimabara | | 32°39′57″N 130°15′08″E﻿ / ﻿32.665917°N 130.252250°E﻿ / 32.665917; 130.252250﻿ (Kitaarima Tanigawa Kirishitan Tombstone) |
| Daichi Zenji Tō 勤皇大智禅師大梅の塔 Kinnō Daichi zenji ōme no tō | Minamishimabara | | 32°37′43″N 130°10′05″E﻿ / ﻿32.628500°N 130.168167°E﻿ / 32.628500; 130.168167﻿ (Daichi Zenji Tō) |
| Kuchinotsu Shirahama Kirishitan Tombstone 口之津町白浜のキリシタン墓碑 Kuchinotsu-chō Shirahama no kirishitan bohi | Minamishimabara | | 32°36′30″N 130°10′32″E﻿ / ﻿32.608417°N 130.175667°E﻿ / 32.608417; 130.175667﻿ (Kuchinotsu Shirahama Kirishitan Tombstone) |
| Namban Ships Landing Point 南蛮船来航の地 Nanban sen raikō no chi | Minamishimabara | between the arrival of Irmão Luís de Almeida in 1563 and 1582, seven Portuguese ships docked in Kuchinotsu harbour (口之津港), including those of Tristão Vaz de Veiga in 1567 and Alessandro Valignano in 1579 | 32°37′07″N 130°11′01″E﻿ / ﻿32.618721°N 130.183690°E﻿ / 32.618721; 130.183690﻿ (Namban Ships Landing Point) |
| Nishiarie Satobō Kirishitan Tombstone 西有家町里坊のキリシタン墓碑 Nishiarie-chō Satobō no kirishitan bohi | Minamishimabara | | 32°39′58″N 130°17′35″E﻿ / ﻿32.666056°N 130.292917°E﻿ / 32.666056; 130.292917﻿ (Nishiarie Satobō Kirishitan Tombstone) |
| Emukae Honjin Site 江迎本陣跡 Emukae honjin ato | Sasebo | | 33°18′38″N 129°37′36″E﻿ / ﻿33.310537°N 129.626633°E﻿ / 33.310537; 129.626633﻿ (Emukae Honjin Site) |
| Kusumoto Tanzan Residence and Kusumoto Family Graves 楠本端山旧宅と楠本家墓地土墳群７基 Kusumoto Tanzan kyūtaku to Kusumoto-ke bochi dofungun 7-ki | Sasebo | 7 graves | 33°04′43″N 129°45′10″E﻿ / ﻿33.078714°N 129.752679°E﻿ / 33.078714; 129.752679﻿ (Kusumoto Tanzan Residence and Kusumoto Family Graves) |
| Sasebo City Iwashita Cave 佐世保市岩下洞穴 Sasebo-shi Iwashita dōketsu | Sasebo | | 33°12′54″N 129°43′52″E﻿ / ﻿33.214985°N 129.731119°E﻿ / 33.214985; 129.731119﻿ (Sasebo City Iwashita Cave) |
| Mount Shimomoto Rock Shelters 下本山岩陰遺跡 Shimomoto-yama Iwakage iseki | Sasebo | | 33°12′22″N 129°40′35″E﻿ / ﻿33.206028°N 129.676361°E﻿ / 33.206028; 129.676361﻿ (Mount Shimomoto Rock Shelters) |
| Naoya Castle Site 直谷城跡 Naoya-jō ato | Sasebo | | 33°16′59″N 129°41′42″E﻿ / ﻿33.283041°N 129.695040°E﻿ / 33.283041; 129.695040﻿ (Naoya Castle Site) |
| Yoshinomoto Kiln Site 葭之本窯跡 Yoshinomoto kama ato | Sasebo | | 33°10′29″N 129°51′11″E﻿ / ﻿33.174722°N 129.853056°E﻿ / 33.174722; 129.853056﻿ (Yoshinomoto Kiln Site) |
| Futsu Kirishitan Tombstones 布津町キリシタン墓碑群 Futsu kirishitan bohi | Minamishimabara | | 32°41′29″N 130°21′05″E﻿ / ﻿32.691361°N 130.351278°E﻿ / 32.691361; 130.351278﻿ (Futsu Kirishitan Tombstones) |
| Kirishitan Tombstone Inscribed "Madeleina" まだれいな銘キリシタン墓碑 Madereina-mei kirishitan bohi | Shimabara | | 32°48′26″N 130°20′44″E﻿ / ﻿32.807306°N 130.345444°E﻿ / 32.807306; 130.345444﻿ (Madeleina Kirishitan Tombstone) |
| Minamiarima Yoshikawa Kirishitan Tombstone 南有馬町吉川のキリシタン墓碑 Minamiarima-chō Yoshikawa no kirishitan bohi | Minamishimabara | | 32°37′04″N 130°13′53″E﻿ / ﻿32.617694°N 130.231361°E﻿ / 32.617694; 130.231361﻿ (Minamiarima Yoshikawa Kirishitan Tombstone) |
| Minamikushiyama Kirishitan Tombstones 南串山町のキリシタン墓碑（３基） Minamikushiyama kirishitan bohi | Unzen | 3 graves | 32°41′06″N 130°10′05″E﻿ / ﻿32.685083°N 130.168139°E﻿ / 32.685083; 130.168139﻿ (Minamikushiyama Kirishitan Tombstones) |
| Ututsugawa Ware Pottery Kiln Site, Tanaka Sōetsu Grave, Kiln Kannon 現川焼陶窯跡 田中宗悦の墓石1基・窯観音1基（堂を含む） Utsutsugawa-yaki kama ato Tanaka Muneyoshi no boseki 1-ki kama kannon 1-ki (dō o fukumu) | Nagasaki | | 32°47′40″N 129°55′43″E﻿ / ﻿32.794583°N 129.928583°E﻿ / 32.794583; 129.928583﻿ (Utsutsu Ware Pottery Kiln Site, Tanaka Sōetsu Grave, Kiln Kannon) |
| Ōga Family Gishien Brothers Tomb 鉅鹿家魏之琰兄弟の墓 Ōga-ke Gishien kyōdai no haka | Nagasaki | | 32°45′28″N 129°53′07″E﻿ / ﻿32.757718°N 129.885376°E﻿ / 32.757718; 129.885376﻿ (Ōga Family Gishien Brothers Tomb) |
| Kagetsu 花月 Kagetsu | Nagasaki | | 32°44′25″N 129°52′48″E﻿ / ﻿32.740351°N 129.880017°E﻿ / 32.740351; 129.880017﻿ (Kagetsu) |
| Kaempfer-Thunberg Monument ケンペル，ツュンベリー記念碑 Kenperu, Tsūnberī kinenhi | Nagasaki | | 32°44′35″N 129°52′25″E﻿ / ﻿32.742961°N 129.873699°E﻿ / 32.742961; 129.873699﻿ (Kaempfer-Thunberg Monument) |
| Kōfuku-ji Temple Area 興福寺寺域 Kōfukuji ji iki | Nagasaki | | 32°44′52″N 129°53′02″E﻿ / ﻿32.747880°N 129.883852°E﻿ / 32.747880; 129.883852﻿ (Kōfukuji Temple Area) |
| International Telegraph Cable Relay Station 国際海底電線小ヶ倉陸揚庫 kokusai kaiteidensen kogakura rikuageko | Nagasaki | in 1871 The Great Northern Telegraph Company laid cables from Nagasaki to Shanghai and Vladivostok | 32°42′16″N 129°50′52″E﻿ / ﻿32.704492°N 129.847737°E﻿ / 32.704492; 129.847737﻿ (International Telegraph Cable Relay Station) |
| Isahaya Family Graves 諫早家墓所 Isahaya-ke bosho | Isahaya | | 32°50′36″N 130°02′51″E﻿ / ﻿32.843384°N 130.047491°E﻿ / 32.843384; 130.047491﻿ (Isahaya Family Graves) |
| Ōmura Imadomi Kirishitan Tombstones 大村市今富のキリシタン墓碑 Ōmura-shi Imadomi no kirishitan bohi | Ōmura | | 32°57′20″N 129°57′24″E﻿ / ﻿32.955639°N 129.956639°E﻿ / 32.955639; 129.956639﻿ (Ōmura Imadomi Kirishitan Tombstones) |
| Seihi Kirishitan Tombstones 西彼町のキリシタン墓碑（２基） Seihi-chō no kirishitan bohi | Saikai | 2 graves | 32°57′58″N 129°46′08″E﻿ / ﻿32.966000°N 129.769000°E﻿ / 32.966000; 129.769000﻿ (Seihi Kirishitan Tombstones) |
| Ōmura Domain Boathouse Site 大村藩お船蔵跡 Ōmura-han ofunagura ato | Ōmura | | 32°54′00″N 129°57′40″E﻿ / ﻿32.900026°N 129.961241°E﻿ / 32.900026; 129.961241﻿ (Ōmura Domain Boathouse Site) |
| Sōfuku-ji Masodō 崇福寺媽姐堂 Sōfukuji Masodō | Nagasaki | | 32°44′32″N 129°53′01″E﻿ / ﻿32.742299°N 129.883605°E﻿ / 32.742299; 129.883605﻿ (Sōfukuji Masodō) |
| Taira Kosaza Tomb 多以良の小佐々氏墓所 Taira no Kosaza-shi bosho | Saikai | | 32°58′09″N 129°38′45″E﻿ / ﻿32.969229°N 129.64591°E﻿ / 32.969229; 129.64591﻿ (Taira Kosaza Tomb) |
| Kōgashira Site 川頭遺跡 Kōgashira iseki | Isahaya | | 32°54′35″N 130°02′01″E﻿ / ﻿32.909712°N 130.033625°E﻿ / 32.909712; 130.033625﻿ (Kōgashira Site) |
| Mount Kotoo Beacon Site 琴尾山烽火台跡 Kotoo-yama hōkadai ato | Isahaya | | 32°52′04″N 129°54′29″E﻿ / ﻿32.867714°N 129.907964°E﻿ / 32.867714; 129.907964﻿ (Mount Kotonoo Beacon Site) |
| Gokōkan Onarimon 五教館御成門 Gokōkan Onarimon | Ōmura | | 32°53′56″N 129°57′39″E﻿ / ﻿32.898999°N 129.960937°E﻿ / 32.898999; 129.960937﻿ (Gokōkan Onarimon) |
| Daiō-ji Five Hundred Arhats 大雄寺の五百羅漢 Daiōji no gohyaku rakan | Isahaya | magaibutsu (磨崖仏) | 32°55′43″N 130°02′19″E﻿ / ﻿32.928653°N 130.038733°E﻿ / 32.928653; 130.038733﻿ (Daiōji Five Hundred Arhats) |
| Todos os Santos Seminary and College Site トードス・オス・サントス跡（セミナリヨ コレジヨを含む） Tōdosu osu Santosu ato (seminariyo korejiyo o fukumu) | Nagasaki | | 32°45′17″N 129°53′22″E﻿ / ﻿32.754609°N 129.889308°E﻿ / 32.754609; 129.889308﻿ (Todos os Santos Seminary and College Site) |
| Nagato Onizuka Kofun 長戸鬼塚古墳 Nagato Onizuka kofun | Isahaya | | 32°55′04″N 130°11′05″E﻿ / ﻿32.917715°N 130.184816°E﻿ / 32.917715; 130.184816﻿ (Nagato Onizuka Kofun) |
| Tomachi Guardhouse Site Pillars 4, 5, 6, 7 戸町番所跡四・五・六・七番石標柱 Tomachi bansho ato yon go roku nana-ban sekihyōchū | Nagasaki | | 32°43′33″N 129°51′30″E﻿ / ﻿32.725909°N 129.858439°E﻿ / 32.725909; 129.858439﻿ (Tomachi Guardhouse Site Pillars 4, 5, 6, 7) |
| Father Marc Marie de Rotz Sites ド・ロ神父遺跡（救助院跡・いわし網工場跡） Do Ro shinpu iseki (kyūjo-in ato iwashi-mō kōjō ato) | Nagasaki | aid centre and sardine processing facility | 32°50′38″N 129°42′03″E﻿ / ﻿32.843832°N 129.700953°E﻿ / 32.843832; 129.700953﻿ (Father Marc Marie de Rotz Sites) |
| Nakaura Julian Birthplace 中浦ジュリアン出生の地 Nagasaki Jinzaemon no haka | Saikai | | 33°00′49″N 129°39′11″E﻿ / ﻿33.01357°N 129.653034°E﻿ / 33.01357; 129.653034﻿ (Nakaura Julian Birthplace) |
| Nagasaki Transit of Venus Observation Monument 長崎金星観測碑・観測台 Nagasaki Kinsei kansoku-hi・kansoku-dai | Nagasaki | | 32°45′15″N 129°53′03″E﻿ / ﻿32.754245°N 129.884121°E﻿ / 32.754245; 129.884121﻿ (Nagasaki Transit of Venus Observation Monument) |
| Nagasaki Jinzaemon Tomb 長崎甚左衛門の墓 Nagasaki Jinzaemon no haka | Togitsu | | 32°49′53″N 129°51′28″E﻿ / ﻿32.83136°N 129.857813°E﻿ / 32.83136; 129.857813﻿ (Nagasaki Jinzaemon Tomb) |
| Nagayo Temple Residence Site Gorintō 長与の寺屋敷跡五輪塔群 Nagayo no tera yashiki ato gorintō gun | Nagayo | | 32°49′01″N 129°51′12″E﻿ / ﻿32.8170674°N 129.8532941°E﻿ / 32.8170674; 129.8532941﻿ (Nagayo Temple Residence Site Gorintō) |
| Namban Ships Landing Point 南蛮船来航の地 Nanban sen raikō no chi | Saikai | invited by Ōmura Sumitada, Irmão Luís de Almeida arrived at Yokoseura in 1562 and built a church, in which Sumitada was baptised the following June; two further Portuguese ships landed before Yokoseura was attacked and razed by Gotō Takakira (後藤貴明) in November | 33°05′08″N 129°42′08″E﻿ / ﻿33.085606°N 129.702104°E﻿ / 33.085606; 129.702104﻿ (Namban Ships Landing Point) |
| Twenty-Six Martyrs Site 日本二十六聖人殉教地 Nihon nijūroku seijin junkyō-chi | Nagasaki | | 32°45′17″N 129°52′18″E﻿ / ﻿32.754706°N 129.871725°E﻿ / 32.754706; 129.871725﻿ (Twenty-Six Martyrs Site) |
| Mount Hōka Watch Tower Site 烽火山かま跡 Hōkazan kama ato | Nagasaki | | 32°45′25″N 129°53′34″E﻿ / ﻿32.756918°N 129.892771°E﻿ / 32.756918; 129.892771﻿ (Mount Hōka Watch Tower Site) |
| Matsushima Coal Mine Pit 4 Site 松島炭鉱第４坑跡 Matsushima tankō dai-yonkō ato | Saikai | | 32°55′19″N 129°36′12″E﻿ / ﻿32.921806°N 129.603278°E﻿ / 32.921806; 129.603278﻿ (Matsushima Coal Mine Pit 4 Site) |
| Hasami Boundary Marker 三方境傍示石（三領石） Sanpō Zakai bōjiseki (sanryōseki) | Hasami | | 33°09′52″N 129°52′24″E﻿ / ﻿33.164453°N 129.873251°E﻿ / 33.164453; 129.873251﻿ (Hasami Boundary Marker) |
| Shimabara Castle Site 島原城跡 Shimabara-jō ato | Shimabara | | 32°47′24″N 130°22′01″E﻿ / ﻿32.790017°N 130.366822°E﻿ / 32.790017; 130.366822﻿ (Shimabara Castle Site) |
| Koshitaka Site 越高遺跡 Shimabara-jō ato | Tsushima | | 34°33′02″N 129°19′24″E﻿ / ﻿34.550621°N 129.323236°E﻿ / 34.550621; 129.323236﻿ (Koshitaka Site) |

## Municipal Historic Sites

As of 1 May 2024, a further three hundred and twenty-three Sites have been designated as being of municipal importance.