UCSCとEnsemblとNCBIで染色体名（Chromosome name）を比較する（GRCh38/hg38）


いっつもウガウガするので何とかしようと思い立った。いちどTableとしてもっておかないと無理。

## Table
```
CM000663.2	1	chr1	1	NC_000001.11	248956422
CM000664.2	2	chr2	2	NC_000002.12	242193529
CM000665.2	3	chr3	3	NC_000003.12	198295559
CM000666.2	4	chr4	4	NC_000004.12	190214555
CM000667.2	5	chr5	5	NC_000005.10	181538259
CM000668.2	6	chr6	6	NC_000006.12	170805979
CM000669.2	7	chr7	7	NC_000007.14	159345973
CM000670.2	8	chr8	8	NC_000008.11	145138636
CM000671.2	9	chr9	9	NC_000009.12	138394717
CM000672.2	10	chr10	10	NC_000010.11	133797422
CM000673.2	11	chr11	11	NC_000011.10	135086622
CM000674.2	12	chr12	12	NC_000012.12	133275309
CM000675.2	13	chr13	13	NC_000013.11	114364328
CM000676.2	14	chr14	14	NC_000014.9	107043718
CM000677.2	15	chr15	15	NC_000015.10	101991189
CM000678.2	16	chr16	16	NC_000016.10	90338345
CM000679.2	17	chr17	17	NC_000017.11	83257441
CM000680.2	18	chr18	18	NC_000018.10	80373285
CM000681.2	19	chr19	19	NC_000019.10	58617616
CM000682.2	20	chr20	20	NC_000020.11	64444167
CM000683.2	21	chr21	21	NC_000021.9	46709983
CM000684.2	22	chr22	22	NC_000022.11	50818468
CM000685.2	X	chrX	X	NC_000023.11	156040895
CM000686.2	Y	chrY	Y	NC_000024.10	57227415
GL000008.2	GL000008.2	chr4_GL000008v2_random	HSCHR4_RANDOM_CTG4	NT_113793.3	209709
GL000009.2	GL000009.2	chr14_GL000009v2_random	HSCHR14_CTG1_UNLOCALIZED	NT_113796.3	201709
GL000194.1	GL000194.1	chr14_GL000194v1_random	HSCHR14_CTG4_UNLOCALIZED	NT_113888.1	191469
GL000195.1	GL000195.1	chrUn_GL000195v1	HSCHRUN_RANDOM_CTG1	NT_113901.1	182896
GL000205.2	GL000205.2	chr17_GL000205v2_random	HSCHR17_RANDOM_CTG3	NT_113930.2	185591
GL000208.1	CHR_HSCHR5_RANDOM_CTG1	chr5_GL000208v1_random	HSCHR5_RANDOM_CTG1	NT_113948.1	92689
GL000209.2	CHR_HSCHR19KIR_RP5_B_HAP_CTG3_1	chr19_GL000209v2_alt	HSCHR19KIR_RP5_B_HAP_CTG3_1	NT_113949.2	177381
GL000213.1	GL000213.1	chrUn_GL000213v1	HSCHRUN_RANDOM_CTG2	NT_167208.1	164239
GL000214.1	CHR_HSCHRUN_RANDOM_CTG4	chrUn_GL000214v1	HSCHRUN_RANDOM_CTG4	NT_167209.1	137718
GL000216.2	GL000216.2	chrUn_GL000216v2	HSCHRUN_RANDOM_CTG6	NT_167211.2	176608
GL000218.1	GL000218.1	chrUn_GL000218v1	HSCHRUN_RANDOM_CTG9	NT_113889.1	161147
GL000219.1	GL000219.1	chrUn_GL000219v1	HSCHRUN_RANDOM_CTG10	NT_167213.1	179198
GL000220.1	GL000220.1	chrUn_GL000220v1	HSCHRUN_RANDOM_CTG11	NT_167214.1	161802
GL000221.1	CHR_HSCHR3UN_CTG2	chr3_GL000221v1_random	HSCHR3UN_CTG2	NT_167215.1	155397
GL000224.1	GL000224.1	chrUn_GL000224v1	HSCHRUN_RANDOM_CTG16	NT_167218.1	179693
GL000225.1	GL000225.1	chr14_GL000225v1_random	HSCHR14_CTG2_UNLOCALIZED	NT_167219.1	211173
GL000226.1	CHR_HSCHRUN_RANDOM_CTG19	chrUn_GL000226v1	HSCHRUN_RANDOM_CTG19	NT_167220.1	15008
GL000250.2	CHR_HSCHR6_MHC_APD_CTG1	chr6_GL000250v2_alt	HSCHR6_MHC_APD_CTG1	NT_167244.2	4672374
GL000251.2	CHR_HSCHR6_MHC_COX_CTG1	chr6_GL000251v2_alt	HSCHR6_MHC_COX_CTG1	NT_113891.3	4795265
GL000252.2	CHR_HSCHR6_MHC_DBB_CTG1	chr6_GL000252v2_alt	HSCHR6_MHC_DBB_CTG1	NT_167245.2	4604811
GL000253.2	CHR_HSCHR6_MHC_MANN_CTG1	chr6_GL000253v2_alt	HSCHR6_MHC_MANN_CTG1	NT_167246.2	4677643
GL000254.2	CHR_HSCHR6_MHC_MCF_CTG1	chr6_GL000254v2_alt	HSCHR6_MHC_MCF_CTG1	NT_167247.2	4827813
GL000255.2	CHR_HSCHR6_MHC_QBL_CTG1	chr6_GL000255v2_alt	HSCHR6_MHC_QBL_CTG1	NT_167248.2	4606388
GL000256.2	CHR_HSCHR6_MHC_SSTO_CTG1	chr6_GL000256v2_alt	HSCHR6_MHC_SSTO_CTG1	NT_167249.2	4929269
GL000257.2	CHR_HSCHR4_1_CTG9	chr4_GL000257v2_alt	HSCHR4_1_CTG9	NT_167250.2	586476
GL000258.2	CHR_HSCHR17_1_CTG5	chr17_GL000258v2_alt	HSCHR17_1_CTG5	NT_167251.2	1821992
GL339449.2	CHR_HSCHR5_2_CTG1_1	chr5_GL339449v2_alt	HSCHR5_2_CTG1_1	NW_003315917.2	1612928
GL383518.1	CHR_HSCHR1_1_CTG31	chr1_GL383518v1_alt	HSCHR1_1_CTG31	NW_003315905.1	182439
GL383519.1	CHR_HSCHR1_2_CTG31	chr1_GL383519v1_alt	HSCHR1_2_CTG31	NW_003315906.1	110268
GL383520.2	CHR_HSCHR1_3_CTG31	chr1_GL383520v2_alt	HSCHR1_3_CTG31	NW_003315907.2	366580
GL383521.1	CHR_HSCHR2_1_CTG5	chr2_GL383521v1_alt	HSCHR2_1_CTG5	NW_003315908.1	143390
GL383522.1	CHR_HSCHR2_1_CTG7_2	chr2_GL383522v1_alt	HSCHR2_1_CTG7_2	NW_003315909.1	123821
GL383526.1	CHR_HSCHR3_1_CTG2_1	chr3_GL383526v1_alt	HSCHR3_1_CTG2_1	NW_003315913.1	180671
GL383527.1	CHR_HSCHR4_1_CTG12	chr4_GL383527v1_alt	HSCHR4_1_CTG12	NW_003315914.1	164536
GL383528.1	CHR_HSCHR4_1_CTG6	chr4_GL383528v1_alt	HSCHR4_1_CTG6	NW_003315915.1	376187
GL383530.1	CHR_HSCHR5_3_CTG1_1	chr5_GL383530v1_alt	HSCHR5_3_CTG1_1	NW_003315918.1	101241
GL383531.1	CHR_HSCHR5_1_CTG5	chr5_GL383531v1_alt	HSCHR5_1_CTG5	NW_003315919.1	173459
GL383532.1	CHR_HSCHR5_1_CTG1	chr5_GL383532v1_alt	HSCHR5_1_CTG1	NW_003315920.1	82728
GL383533.1	CHR_HSCHR6_1_CTG2	chr6_GL383533v1_alt	HSCHR6_1_CTG2	NW_003315921.1	124736
GL383534.2	CHR_HSCHR7_1_CTG6	chr7_GL383534v2_alt	HSCHR7_1_CTG6	NW_003315922.2	119183
GL383539.1	CHR_HSCHR9_1_CTG1	chr9_GL383539v1_alt	HSCHR9_1_CTG1	NW_003315928.1	162988
GL383540.1	CHR_HSCHR9_1_CTG2	chr9_GL383540v1_alt	HSCHR9_1_CTG2	NW_003315929.1	71551
GL383541.1	CHR_HSCHR9_1_CTG3	chr9_GL383541v1_alt	HSCHR9_1_CTG3	NW_003315930.1	171286
GL383542.1	CHR_HSCHR9_1_CTG4	chr9_GL383542v1_alt	HSCHR9_1_CTG4	NW_003315931.1	60032
GL383545.1	CHR_HSCHR10_1_CTG1	chr10_GL383545v1_alt	HSCHR10_1_CTG1	NW_003315934.1	179254
GL383546.1	CHR_HSCHR10_1_CTG2	chr10_GL383546v1_alt	HSCHR10_1_CTG2	NW_003315935.1	309802
GL383547.1	CHR_HSCHR11_1_CTG1_1	chr11_GL383547v1_alt	HSCHR11_1_CTG1_1	NW_003315936.1	154407
GL383549.1	CHR_HSCHR12_1_CTG2	chr12_GL383549v1_alt	HSCHR12_1_CTG2	NW_003315938.1	120804
GL383550.2	CHR_HSCHR12_1_CTG2_1	chr12_GL383550v2_alt	HSCHR12_1_CTG2_1	NW_003315939.2	169178
GL383551.1	CHR_HSCHR12_4_CTG2_1	chr12_GL383551v1_alt	HSCHR12_4_CTG2_1	NW_003315940.1	184319
GL383552.1	CHR_HSCHR12_2_CTG2_1	chr12_GL383552v1_alt	HSCHR12_2_CTG2_1	NW_003315941.1	138655
GL383553.2	CHR_HSCHR12_3_CTG2_1	chr12_GL383553v2_alt	HSCHR12_3_CTG2_1	NW_003315942.2	152874
GL383554.1	CHR_HSCHR15_1_CTG8	chr15_GL383554v1_alt	HSCHR15_1_CTG8	NW_003315943.1	296527
GL383555.2	CHR_HSCHR15_2_CTG8	chr15_GL383555v2_alt	HSCHR15_2_CTG8	NW_003315944.2	388773
GL383556.1	CHR_HSCHR16_1_CTG3_1	chr16_GL383556v1_alt	HSCHR16_1_CTG3_1	NW_003315945.1	192462
GL383557.1	CHR_HSCHR16_2_CTG3_1	chr16_GL383557v1_alt	HSCHR16_2_CTG3_1	NW_003315946.1	89672
GL383563.3	CHR_HSCHR17_1_CTG1	chr17_GL383563v3_alt	HSCHR17_1_CTG1	NW_003315952.3	375691
GL383564.2	CHR_HSCHR17_1_CTG4	chr17_GL383564v2_alt	HSCHR17_1_CTG4	NW_003315953.2	133151
GL383565.1	CHR_HSCHR17_2_CTG4	chr17_GL383565v1_alt	HSCHR17_2_CTG4	NW_003315954.1	223995
GL383566.1	CHR_HSCHR17_3_CTG4	chr17_GL383566v1_alt	HSCHR17_3_CTG4	NW_003315955.1	90219
GL383567.1	CHR_HSCHR18_1_CTG1_1	chr18_GL383567v1_alt	HSCHR18_1_CTG1_1	NW_003315956.1	289831
GL383568.1	CHR_HSCHR18_1_CTG2	chr18_GL383568v1_alt	HSCHR18_1_CTG2	NW_003315957.1	104552
GL383569.1	CHR_HSCHR18_1_CTG2_1	chr18_GL383569v1_alt	HSCHR18_1_CTG2_1	NW_003315958.1	167950
GL383570.1	CHR_HSCHR18_2_CTG1_1	chr18_GL383570v1_alt	HSCHR18_2_CTG1_1	NW_003315959.1	164789
GL383571.1	CHR_HSCHR18_2_CTG2	chr18_GL383571v1_alt	HSCHR18_2_CTG2	NW_003315960.1	198278
GL383572.1	CHR_HSCHR18_2_CTG2_1	chr18_GL383572v1_alt	HSCHR18_2_CTG2_1	NW_003315961.1	159547
GL383573.1	CHR_HSCHR19_1_CTG2	chr19_GL383573v1_alt	HSCHR19_1_CTG2	NW_003315962.1	385657
GL383574.1	CHR_HSCHR19_1_CTG3_1	chr19_GL383574v1_alt	HSCHR19_1_CTG3_1	NW_003315963.1	155864
GL383575.2	CHR_HSCHR19_2_CTG2	chr19_GL383575v2_alt	HSCHR19_2_CTG2	NW_003315964.2	170222
GL383576.1	CHR_HSCHR19_3_CTG2	chr19_GL383576v1_alt	HSCHR19_3_CTG2	NW_003315965.1	188024
GL383577.2	CHR_HSCHR20_1_CTG1	chr20_GL383577v2_alt	HSCHR20_1_CTG1	NW_003315966.2	128386
GL383578.2	CHR_HSCHR21_1_CTG1_1	chr21_GL383578v2_alt	HSCHR21_1_CTG1_1	NW_003315967.2	63917
GL383579.2	CHR_HSCHR21_2_CTG1_1	chr21_GL383579v2_alt	HSCHR21_2_CTG1_1	NW_003315968.2	201197
GL383580.2	CHR_HSCHR21_3_CTG1_1	chr21_GL383580v2_alt	HSCHR21_3_CTG1_1	NW_003315969.2	74653
GL383581.2	CHR_HSCHR21_4_CTG1_1	chr21_GL383581v2_alt	HSCHR21_4_CTG1_1	NW_003315970.2	116689
GL383582.2	CHR_HSCHR22_1_CTG1	chr22_GL383582v2_alt	HSCHR22_1_CTG1	NW_003315971.2	162811
GL383583.2	CHR_HSCHR22_1_CTG2	chr22_GL383583v2_alt	HSCHR22_1_CTG2	NW_003315972.2	96924
GL582966.2	CHR_HSCHR2_2_CTG7_2	chr2_GL582966v2_alt	HSCHR2_2_CTG7_2	NW_003571033.2	96131
GL877875.1	CHR_HSCHR12_1_CTG1	chr12_GL877875v1_alt	HSCHR12_1_CTG1	NW_003571049.1	167313
GL877876.1	CHR_HSCHR12_2_CTG2	chr12_GL877876v1_alt	HSCHR12_2_CTG2	NW_003571050.1	408271
GL949742.1	CHR_HSCHR5_2_CTG1	chr5_GL949742v1_alt	HSCHR5_2_CTG1	NW_003571036.1	226852
GL949746.1	CHR_HSCHR19LRC_COX1_CTG3_1	chr19_GL949746v1_alt	HSCHR19LRC_COX1_CTG3_1	NW_003571054.1	987716
GL949747.2	CHR_HSCHR19LRC_COX2_CTG3_1	chr19_GL949747v2_alt	HSCHR19LRC_COX2_CTG3_1	NW_003571055.2	729520
GL949748.2	CHR_HSCHR19LRC_LRC_I_CTG3_1	chr19_GL949748v2_alt	HSCHR19LRC_LRC_I_CTG3_1	NW_003571056.2	1064304
GL949749.2	CHR_HSCHR19LRC_LRC_J_CTG3_1	chr19_GL949749v2_alt	HSCHR19LRC_LRC_J_CTG3_1	NW_003571057.2	1091841
GL949750.2	CHR_HSCHR19LRC_LRC_S_CTG3_1	chr19_GL949750v2_alt	HSCHR19LRC_LRC_S_CTG3_1	NW_003571058.2	1066390
GL949751.2	CHR_HSCHR19LRC_LRC_T_CTG3_1	chr19_GL949751v2_alt	HSCHR19LRC_LRC_T_CTG3_1	NW_003571059.2	1002683
GL949752.1	CHR_HSCHR19LRC_PGF1_CTG3_1	chr19_GL949752v1_alt	HSCHR19LRC_PGF1_CTG3_1	NW_003571060.1	987100
GL949753.2	CHR_HSCHR19LRC_PGF2_CTG3_1	chr19_GL949753v2_alt	HSCHR19LRC_PGF2_CTG3_1	NW_003571061.2	796479
J01415.2	MT	chrM	MT	NC_012920.1	16569
JH159136.1	HG142_HG150_NOVEL_TEST	chr11_JH159136v1_alt	HG142_HG150_NOVEL_TEST	NW_003871073.1	200998
JH159137.1	HG151_NOVEL_TEST	chr11_JH159137v1_alt	HG151_NOVEL_TEST	NW_003871074.1	191409
JH159146.1	CHR_HSCHR17_4_CTG4	chr17_JH159146v1_alt	HSCHR17_4_CTG4	NW_003871091.1	278131
JH159147.1	CHR_HSCHR17_5_CTG4	chr17_JH159147v1_alt	HSCHR17_5_CTG4	NW_003871092.1	70345
JH159148.1	CHR_HSCHR17_6_CTG4	chr17_JH159148v1_alt	HSCHR17_6_CTG4	NW_003871093.1	88070
JH636055.2	CHR_HSCHR3_1_CTG1	chr3_JH636055v2_alt	HSCHR3_1_CTG1	NW_003871060.2	173151
KB021644.2	CHR_HSCHR6_1_CTG3	chr6_KB021644v2_alt	HSCHR6_1_CTG3	NW_004166862.2	185823
KB663609.1	CHR_HSCHR22_2_CTG1	chr22_KB663609v1_alt	HSCHR22_2_CTG1	NW_004504305.1	74013
KI270302.1	CHR_HSCHRUN_RANDOM_100	chrUn_KI270302v1	HSCHRUN_RANDOM_100	NT_187396.1	2274
KI270303.1	CHR_HSCHRUN_RANDOM_102	chrUn_KI270303v1	HSCHRUN_RANDOM_102	NT_187398.1	1942
KI270304.1	CHR_HSCHRUN_RANDOM_101	chrUn_KI270304v1	HSCHRUN_RANDOM_101	NT_187397.1	2165
KI270305.1	CHR_HSCHRUN_RANDOM_103	chrUn_KI270305v1	HSCHRUN_RANDOM_103	NT_187399.1	1472
KI270310.1	CHR_HSCHRUN_RANDOM_106	chrUn_KI270310v1	HSCHRUN_RANDOM_106	NT_187402.1	1201
KI270311.1	CHR_HSCHRUN_RANDOM_110	chrUn_KI270311v1	HSCHRUN_RANDOM_110	NT_187406.1	12399
KI270312.1	CHR_HSCHRUN_RANDOM_109	chrUn_KI270312v1	HSCHRUN_RANDOM_109	NT_187405.1	998
KI270315.1	CHR_HSCHRUN_RANDOM_108	chrUn_KI270315v1	HSCHRUN_RANDOM_108	NT_187404.1	2276
KI270316.1	CHR_HSCHRUN_RANDOM_107	chrUn_KI270316v1	HSCHRUN_RANDOM_107	NT_187403.1	1444
KI270317.1	CHR_HSCHRUN_RANDOM_111	chrUn_KI270317v1	HSCHRUN_RANDOM_111	NT_187407.1	37690
KI270320.1	CHR_HSCHRUN_RANDOM_105	chrUn_KI270320v1	HSCHRUN_RANDOM_105	NT_187401.1	4416
KI270322.1	CHR_HSCHRUN_RANDOM_104	chrUn_KI270322v1	HSCHRUN_RANDOM_104	NT_187400.1	21476
KI270329.1	CHR_HSCHRUN_RANDOM_167	chrUn_KI270329v1	HSCHRUN_RANDOM_167	NT_187459.1	1040
KI270330.1	CHR_HSCHRUN_RANDOM_166	chrUn_KI270330v1	HSCHRUN_RANDOM_166	NT_187458.1	1652
KI270333.1	CHR_HSCHRUN_RANDOM_169	chrUn_KI270333v1	HSCHRUN_RANDOM_169	NT_187461.1	2699
KI270334.1	CHR_HSCHRUN_RANDOM_168	chrUn_KI270334v1	HSCHRUN_RANDOM_168	NT_187460.1	1368
KI270335.1	CHR_HSCHRUN_RANDOM_170	chrUn_KI270335v1	HSCHRUN_RANDOM_170	NT_187462.1	1048
KI270336.1	CHR_HSCHRUN_RANDOM_173	chrUn_KI270336v1	HSCHRUN_RANDOM_173	NT_187465.1	1026
KI270337.1	CHR_HSCHRUN_RANDOM_174	chrUn_KI270337v1	HSCHRUN_RANDOM_174	NT_187466.1	1121
KI270338.1	CHR_HSCHRUN_RANDOM_171	chrUn_KI270338v1	HSCHRUN_RANDOM_171	NT_187463.1	1428
KI270340.1	CHR_HSCHRUN_RANDOM_172	chrUn_KI270340v1	HSCHRUN_RANDOM_172	NT_187464.1	1428
KI270362.1	CHR_HSCHRUN_RANDOM_177	chrUn_KI270362v1	HSCHRUN_RANDOM_177	NT_187469.1	3530
KI270363.1	CHR_HSCHRUN_RANDOM_175	chrUn_KI270363v1	HSCHRUN_RANDOM_175	NT_187467.1	1803
KI270364.1	CHR_HSCHRUN_RANDOM_176	chrUn_KI270364v1	HSCHRUN_RANDOM_176	NT_187468.1	2855
KI270366.1	CHR_HSCHRUN_RANDOM_178	chrUn_KI270366v1	HSCHRUN_RANDOM_178	NT_187470.1	8320
KI270371.1	CHR_HSCHRUN_RANDOM_202	chrUn_KI270371v1	HSCHRUN_RANDOM_202	NT_187494.1	2805
KI270372.1	CHR_HSCHRUN_RANDOM_199	chrUn_KI270372v1	HSCHRUN_RANDOM_199	NT_187491.1	1650
KI270373.1	CHR_HSCHRUN_RANDOM_200	chrUn_KI270373v1	HSCHRUN_RANDOM_200	NT_187492.1	1451
KI270374.1	CHR_HSCHRUN_RANDOM_198	chrUn_KI270374v1	HSCHRUN_RANDOM_198	NT_187490.1	2656
KI270375.1	CHR_HSCHRUN_RANDOM_201	chrUn_KI270375v1	HSCHRUN_RANDOM_201	NT_187493.1	2378
KI270376.1	CHR_HSCHRUN_RANDOM_197	chrUn_KI270376v1	HSCHRUN_RANDOM_197	NT_187489.1	1136
KI270378.1	CHR_HSCHRUN_RANDOM_179	chrUn_KI270378v1	HSCHRUN_RANDOM_179	NT_187471.1	1048
KI270379.1	CHR_HSCHRUN_RANDOM_180	chrUn_KI270379v1	HSCHRUN_RANDOM_180	NT_187472.1	1045
KI270381.1	CHR_HSCHRUN_RANDOM_194	chrUn_KI270381v1	HSCHRUN_RANDOM_194	NT_187486.1	1930
KI270382.1	CHR_HSCHRUN_RANDOM_196	chrUn_KI270382v1	HSCHRUN_RANDOM_196	NT_187488.1	4215
KI270383.1	CHR_HSCHRUN_RANDOM_190	chrUn_KI270383v1	HSCHRUN_RANDOM_190	NT_187482.1	1750
KI270384.1	CHR_HSCHRUN_RANDOM_192	chrUn_KI270384v1	HSCHRUN_RANDOM_192	NT_187484.1	1658
KI270385.1	CHR_HSCHRUN_RANDOM_195	chrUn_KI270385v1	HSCHRUN_RANDOM_195	NT_187487.1	990
KI270386.1	CHR_HSCHRUN_RANDOM_188	chrUn_KI270386v1	HSCHRUN_RANDOM_188	NT_187480.1	1788
KI270387.1	CHR_HSCHRUN_RANDOM_183	chrUn_KI270387v1	HSCHRUN_RANDOM_183	NT_187475.1	1537
KI270388.1	CHR_HSCHRUN_RANDOM_186	chrUn_KI270388v1	HSCHRUN_RANDOM_186	NT_187478.1	1216
KI270389.1	CHR_HSCHRUN_RANDOM_181	chrUn_KI270389v1	HSCHRUN_RANDOM_181	NT_187473.1	1298
KI270390.1	CHR_HSCHRUN_RANDOM_182	chrUn_KI270390v1	HSCHRUN_RANDOM_182	NT_187474.1	2387
KI270391.1	CHR_HSCHRUN_RANDOM_189	chrUn_KI270391v1	HSCHRUN_RANDOM_189	NT_187481.1	1484
KI270392.1	CHR_HSCHRUN_RANDOM_193	chrUn_KI270392v1	HSCHRUN_RANDOM_193	NT_187485.1	971
KI270393.1	CHR_HSCHRUN_RANDOM_191	chrUn_KI270393v1	HSCHRUN_RANDOM_191	NT_187483.1	1308
KI270394.1	CHR_HSCHRUN_RANDOM_187	chrUn_KI270394v1	HSCHRUN_RANDOM_187	NT_187479.1	970
KI270395.1	CHR_HSCHRUN_RANDOM_184	chrUn_KI270395v1	HSCHRUN_RANDOM_184	NT_187476.1	1143
KI270396.1	CHR_HSCHRUN_RANDOM_185	chrUn_KI270396v1	HSCHRUN_RANDOM_185	NT_187477.1	1880
KI270411.1	CHR_HSCHRUN_RANDOM_113	chrUn_KI270411v1	HSCHRUN_RANDOM_113	NT_187409.1	2646
KI270412.1	CHR_HSCHRUN_RANDOM_112	chrUn_KI270412v1	HSCHRUN_RANDOM_112	NT_187408.1	1179
KI270414.1	CHR_HSCHRUN_RANDOM_114	chrUn_KI270414v1	HSCHRUN_RANDOM_114	NT_187410.1	2489
KI270417.1	CHR_HSCHRUN_RANDOM_119	chrUn_KI270417v1	HSCHRUN_RANDOM_119	NT_187415.1	2043
KI270418.1	CHR_HSCHRUN_RANDOM_116	chrUn_KI270418v1	HSCHRUN_RANDOM_116	NT_187412.1	2145
KI270419.1	CHR_HSCHRUN_RANDOM_115	chrUn_KI270419v1	HSCHRUN_RANDOM_115	NT_187411.1	1029
KI270420.1	CHR_HSCHRUN_RANDOM_117	chrUn_KI270420v1	HSCHRUN_RANDOM_117	NT_187413.1	2321
KI270422.1	CHR_HSCHRUN_RANDOM_120	chrUn_KI270422v1	HSCHRUN_RANDOM_120	NT_187416.1	1445
KI270423.1	CHR_HSCHRUN_RANDOM_121	chrUn_KI270423v1	HSCHRUN_RANDOM_121	NT_187417.1	981
KI270424.1	CHR_HSCHRUN_RANDOM_118	chrUn_KI270424v1	HSCHRUN_RANDOM_118	NT_187414.1	2140
KI270425.1	CHR_HSCHRUN_RANDOM_122	chrUn_KI270425v1	HSCHRUN_RANDOM_122	NT_187418.1	1884
KI270429.1	CHR_HSCHRUN_RANDOM_123	chrUn_KI270429v1	HSCHRUN_RANDOM_123	NT_187419.1	1361
KI270435.1	CHR_HSCHRUN_RANDOM_128	chrUn_KI270435v1	HSCHRUN_RANDOM_128	NT_187424.1	92983
KI270438.1	CHR_HSCHRUN_RANDOM_129	chrUn_KI270438v1	HSCHRUN_RANDOM_129	NT_187425.1	112505
KI270442.1	KI270442.1	chrUn_KI270442v1	HSCHRUN_RANDOM_124	NT_187420.1	392061
KI270448.1	CHR_HSCHRUN_RANDOM_203	chrUn_KI270448v1	HSCHRUN_RANDOM_203	NT_187495.1	7992
KI270465.1	CHR_HSCHRUN_RANDOM_126	chrUn_KI270465v1	HSCHRUN_RANDOM_126	NT_187422.1	1774
KI270466.1	CHR_HSCHRUN_RANDOM_125	chrUn_KI270466v1	HSCHRUN_RANDOM_125	NT_187421.1	1233
KI270467.1	CHR_HSCHRUN_RANDOM_127	chrUn_KI270467v1	HSCHRUN_RANDOM_127	NT_187423.1	3920
KI270468.1	CHR_HSCHRUN_RANDOM_130	chrUn_KI270468v1	HSCHRUN_RANDOM_130	NT_187426.1	4055
KI270507.1	CHR_HSCHRUN_RANDOM_141	chrUn_KI270507v1	HSCHRUN_RANDOM_141	NT_187437.1	5353
KI270508.1	CHR_HSCHRUN_RANDOM_134	chrUn_KI270508v1	HSCHRUN_RANDOM_134	NT_187430.1	1951
KI270509.1	CHR_HSCHRUN_RANDOM_132	chrUn_KI270509v1	HSCHRUN_RANDOM_132	NT_187428.1	2318
KI270510.1	CHR_HSCHRUN_RANDOM_131	chrUn_KI270510v1	HSCHRUN_RANDOM_131	NT_187427.1	2415
KI270511.1	CHR_HSCHRUN_RANDOM_139	chrUn_KI270511v1	HSCHRUN_RANDOM_139	NT_187435.1	8127
KI270512.1	CHR_HSCHRUN_RANDOM_136	chrUn_KI270512v1	HSCHRUN_RANDOM_136	NT_187432.1	22689
KI270515.1	CHR_HSCHRUN_RANDOM_140	chrUn_KI270515v1	HSCHRUN_RANDOM_140	NT_187436.1	6361
KI270516.1	CHR_HSCHRUN_RANDOM_135	chrUn_KI270516v1	HSCHRUN_RANDOM_135	NT_187431.1	1300
KI270517.1	CHR_HSCHRUN_RANDOM_142	chrUn_KI270517v1	HSCHRUN_RANDOM_142	NT_187438.1	3253
KI270518.1	CHR_HSCHRUN_RANDOM_133	chrUn_KI270518v1	HSCHRUN_RANDOM_133	NT_187429.1	2186
KI270519.1	CHR_HSCHRUN_RANDOM_137	chrUn_KI270519v1	HSCHRUN_RANDOM_137	NT_187433.1	138126
KI270521.1	CHR_HSCHRUN_RANDOM_204	chrUn_KI270521v1	HSCHRUN_RANDOM_204	NT_187496.1	7642
KI270522.1	CHR_HSCHRUN_RANDOM_138	chrUn_KI270522v1	HSCHRUN_RANDOM_138	NT_187434.1	5674
KI270528.1	CHR_HSCHRUN_RANDOM_144	chrUn_KI270528v1	HSCHRUN_RANDOM_144	NT_187440.1	2983
KI270529.1	CHR_HSCHRUN_RANDOM_143	chrUn_KI270529v1	HSCHRUN_RANDOM_143	NT_187439.1	1899
KI270530.1	CHR_HSCHRUN_RANDOM_145	chrUn_KI270530v1	HSCHRUN_RANDOM_145	NT_187441.1	2168
KI270538.1	CHR_HSCHRUN_RANDOM_147	chrUn_KI270538v1	HSCHRUN_RANDOM_147	NT_187443.1	91309
KI270539.1	CHR_HSCHRUN_RANDOM_146	chrUn_KI270539v1	HSCHRUN_RANDOM_146	NT_187442.1	993
KI270544.1	CHR_HSCHRUN_RANDOM_148	chrUn_KI270544v1	HSCHRUN_RANDOM_148	NT_187444.1	1202
KI270548.1	CHR_HSCHRUN_RANDOM_149	chrUn_KI270548v1	HSCHRUN_RANDOM_149	NT_187445.1	1599
KI270579.1	CHR_HSCHRUN_RANDOM_158	chrUn_KI270579v1	HSCHRUN_RANDOM_158	NT_187450.1	31033
KI270580.1	CHR_HSCHRUN_RANDOM_156	chrUn_KI270580v1	HSCHRUN_RANDOM_156	NT_187448.1	1553
KI270581.1	CHR_HSCHRUN_RANDOM_157	chrUn_KI270581v1	HSCHRUN_RANDOM_157	NT_187449.1	7046
KI270582.1	CHR_HSCHRUN_RANDOM_162	chrUn_KI270582v1	HSCHRUN_RANDOM_162	NT_187454.1	6504
KI270583.1	CHR_HSCHRUN_RANDOM_154	chrUn_KI270583v1	HSCHRUN_RANDOM_154	NT_187446.1	1400
KI270584.1	CHR_HSCHRUN_RANDOM_161	chrUn_KI270584v1	HSCHRUN_RANDOM_161	NT_187453.1	4513
KI270587.1	CHR_HSCHRUN_RANDOM_155	chrUn_KI270587v1	HSCHRUN_RANDOM_155	NT_187447.1	2969
KI270588.1	CHR_HSCHRUN_RANDOM_163	chrUn_KI270588v1	HSCHRUN_RANDOM_163	NT_187455.1	6158
KI270589.1	CHR_HSCHRUN_RANDOM_159	chrUn_KI270589v1	HSCHRUN_RANDOM_159	NT_187451.1	44474
KI270590.1	CHR_HSCHRUN_RANDOM_160	chrUn_KI270590v1	HSCHRUN_RANDOM_160	NT_187452.1	4685
KI270591.1	CHR_HSCHRUN_RANDOM_165	chrUn_KI270591v1	HSCHRUN_RANDOM_165	NT_187457.1	5796
KI270593.1	CHR_HSCHRUN_RANDOM_164	chrUn_KI270593v1	HSCHRUN_RANDOM_164	NT_187456.1	3041
KI270706.1	KI270706.1	chr1_KI270706v1_random	HSCHR1_CTG1_UNLOCALIZED	NT_187361.1	175055
KI270707.1	KI270707.1	chr1_KI270707v1_random	HSCHR1_CTG2_UNLOCALIZED	NT_187362.1	32032
KI270708.1	KI270708.1	chr1_KI270708v1_random	HSCHR1_CTG3_UNLOCALIZED	NT_187363.1	127682
KI270709.1	CHR_HSCHR1_CTG4_UNLOCALIZED	chr1_KI270709v1_random	HSCHR1_CTG4_UNLOCALIZED	NT_187364.1	66860
KI270710.1	CHR_HSCHR1_CTG5_UNLOCALIZED	chr1_KI270710v1_random	HSCHR1_CTG5_UNLOCALIZED	NT_187365.1	40176
KI270711.1	KI270711.1	chr1_KI270711v1_random	HSCHR1_CTG6_UNLOCALIZED	NT_187366.1	42210
KI270712.1	CHR_HSCHR1_CTG7_UNLOCALIZED	chr1_KI270712v1_random	HSCHR1_CTG7_UNLOCALIZED	NT_187367.1	176043
KI270713.1	KI270713.1	chr1_KI270713v1_random	HSCHR1_CTG8_UNLOCALIZED	NT_187368.1	40745
KI270714.1	KI270714.1	chr1_KI270714v1_random	HSCHR1_CTG9_UNLOCALIZED	NT_187369.1	41717
KI270715.1	CHR_HSCHR2_RANDOM_CTG1	chr2_KI270715v1_random	HSCHR2_RANDOM_CTG1	NT_187370.1	161471
KI270716.1	CHR_HSCHR2_RANDOM_CTG2	chr2_KI270716v1_random	HSCHR2_RANDOM_CTG2	NT_187371.1	153799
KI270717.1	CHR_HSCHR9_UNLOCALIZED_CTG1	chr9_KI270717v1_random	HSCHR9_UNLOCALIZED_CTG1	NT_187372.1	40062
KI270718.1	CHR_HSCHR9_UNLOCALIZED_CTG2	chr9_KI270718v1_random	HSCHR9_UNLOCALIZED_CTG2	NT_187373.1	38054
KI270719.1	CHR_HSCHR9_UNLOCALIZED_CTG3	chr9_KI270719v1_random	HSCHR9_UNLOCALIZED_CTG3	NT_187374.1	176845
KI270720.1	CHR_HSCHR9_UNLOCALIZED_CTG4	chr9_KI270720v1_random	HSCHR9_UNLOCALIZED_CTG4	NT_187375.1	39050
KI270721.1	KI270721.1	chr11_KI270721v1_random	HSCHR11_CTG1_UNLOCALIZED	NT_187376.1	100316
KI270722.1	KI270722.1	chr14_KI270722v1_random	HSCHR14_CTG3_UNLOCALIZED	NT_187377.1	194050
KI270723.1	KI270723.1	chr14_KI270723v1_random	HSCHR14_CTG5_UNLOCALIZED	NT_187378.1	38115
KI270724.1	KI270724.1	chr14_KI270724v1_random	HSCHR14_CTG6_UNLOCALIZED	NT_187379.1	39555
KI270725.1	CHR_HSCHR14_CTG7_UNLOCALIZED	chr14_KI270725v1_random	HSCHR14_CTG7_UNLOCALIZED	NT_187380.1	172810
KI270726.1	KI270726.1	chr14_KI270726v1_random	HSCHR14_CTG8_UNLOCALIZED	NT_187381.1	43739
KI270727.1	KI270727.1	chr15_KI270727v1_random	HSCHR15_RANDOM_CTG1	NT_187382.1	448248
KI270728.1	KI270728.1	chr16_KI270728v1_random	HSCHR16_RANDOM_CTG1	NT_187383.1	1872759
KI270729.1	CHR_HSCHR17_RANDOM_CTG4	chr17_KI270729v1_random	HSCHR17_RANDOM_CTG4	NT_187384.1	280839
KI270730.1	CHR_HSCHR17_RANDOM_CTG5	chr17_KI270730v1_random	HSCHR17_RANDOM_CTG5	NT_187385.1	112551
KI270731.1	KI270731.1	chr22_KI270731v1_random	HSCHR22_UNLOCALIZED_CTG1	NT_187386.1	150754
KI270732.1	CHR_HSCHR22_UNLOCALIZED_CTG2	chr22_KI270732v1_random	HSCHR22_UNLOCALIZED_CTG2	NT_187387.1	41543
KI270733.1	KI270733.1	chr22_KI270733v1_random	HSCHR22_UNLOCALIZED_CTG3	NT_187388.1	179772
KI270734.1	KI270734.1	chr22_KI270734v1_random	HSCHR22_UNLOCALIZED_CTG4	NT_187389.1	165050
KI270735.1	CHR_HSCHR22_UNLOCALIZED_CTG5	chr22_KI270735v1_random	HSCHR22_UNLOCALIZED_CTG5	NT_187390.1	42811
KI270736.1	CHR_HSCHR22_UNLOCALIZED_CTG6	chr22_KI270736v1_random	HSCHR22_UNLOCALIZED_CTG6	NT_187391.1	181920
KI270737.1	CHR_HSCHR22_UNLOCALIZED_CTG7	chr22_KI270737v1_random	HSCHR22_UNLOCALIZED_CTG7	NT_187392.1	103838
KI270738.1	CHR_HSCHR22_UNLOCALIZED_CTG8	chr22_KI270738v1_random	HSCHR22_UNLOCALIZED_CTG8	NT_187393.1	99375
KI270739.1	CHR_HSCHR22_UNLOCALIZED_CTG9	chr22_KI270739v1_random	HSCHR22_UNLOCALIZED_CTG9	NT_187394.1	73985
KI270740.1	CHR_HSCHRY_RANDOM_CTG1	chrY_KI270740v1_random	HSCHRY_RANDOM_CTG1	NT_187395.1	37240
KI270741.1	KI270741.1	chrUn_KI270741v1	HSCHRUN_RANDOM_CTG17	NT_187497.1	157432
KI270742.1	CHR_HSCHRUN_RANDOM_CTG42	chrUn_KI270742v1	HSCHRUN_RANDOM_CTG42	NT_187513.1	186739
KI270743.1	KI270743.1	chrUn_KI270743v1	HSCHRUN_RANDOM_CTG20	NT_187498.1	210658
KI270744.1	KI270744.1	chrUn_KI270744v1	HSCHRUN_RANDOM_CTG21	NT_187499.1	168472
KI270745.1	CHR_HSCHRUN_RANDOM_CTG22	chrUn_KI270745v1	HSCHRUN_RANDOM_CTG22	NT_187500.1	41891
KI270746.1	CHR_HSCHRUN_RANDOM_CTG23	chrUn_KI270746v1	HSCHRUN_RANDOM_CTG23	NT_187501.1	66486
KI270747.1	CHR_HSCHRUN_RANDOM_CTG24	chrUn_KI270747v1	HSCHRUN_RANDOM_CTG24	NT_187502.1	198735
KI270748.1	CHR_HSCHRUN_RANDOM_CTG25	chrUn_KI270748v1	HSCHRUN_RANDOM_CTG25	NT_187503.1	93321
KI270749.1	CHR_HSCHRUN_RANDOM_CTG26	chrUn_KI270749v1	HSCHRUN_RANDOM_CTG26	NT_187504.1	158759
KI270750.1	KI270750.1	chrUn_KI270750v1	HSCHRUN_RANDOM_CTG27	NT_187505.1	148850
KI270751.1	CHR_HSCHRUN_RANDOM_CTG28	chrUn_KI270751v1	HSCHRUN_RANDOM_CTG28	NT_187506.1	150742
KI270752.1	KI270752.1	chrUn_KI270752v1	HSCHRUN_RANDOM_CTG29	NT_187507.1	27745
KI270753.1	CHR_HSCHRUN_RANDOM_CTG30	chrUn_KI270753v1	HSCHRUN_RANDOM_CTG30	NT_187508.1	62944
KI270754.1	CHR_HSCHRUN_RANDOM_CTG33	chrUn_KI270754v1	HSCHRUN_RANDOM_CTG33	NT_187509.1	40191
KI270755.1	CHR_HSCHRUN_RANDOM_CTG34	chrUn_KI270755v1	HSCHRUN_RANDOM_CTG34	NT_187510.1	36723
KI270756.1	CHR_HSCHRUN_RANDOM_CTG35	chrUn_KI270756v1	HSCHRUN_RANDOM_CTG35	NT_187511.1	79590
KI270757.1	CHR_HSCHRUN_RANDOM_CTG36	chrUn_KI270757v1	HSCHRUN_RANDOM_CTG36	NT_187512.1	71251
KI270758.1	CHR_HSCHR6_8_CTG1	chr6_KI270758v1_alt	HSCHR6_8_CTG1	NT_187692.1	76752
KI270759.1	CHR_HSCHR1_1_CTG32_1	chr1_KI270759v1_alt	HSCHR1_1_CTG32_1	NT_187516.1	425601
KI270760.1	CHR_HSCHR1_1_CTG11	chr1_KI270760v1_alt	HSCHR1_1_CTG11	NT_187514.1	109528
KI270761.1	CHR_HSCHR1_2_CTG32_1	chr1_KI270761v1_alt	HSCHR1_2_CTG32_1	NT_187518.1	165834
KI270762.1	CHR_HSCHR1_1_CTG3	chr1_KI270762v1_alt	HSCHR1_1_CTG3	NT_187515.1	354444
KI270763.1	CHR_HSCHR1_3_CTG32_1	chr1_KI270763v1_alt	HSCHR1_3_CTG32_1	NT_187519.1	911658
KI270764.1	CHR_HSCHR1_4_CTG32_1	chr1_KI270764v1_alt	HSCHR1_4_CTG32_1	NT_187521.1	50258
KI270765.1	CHR_HSCHR1_4_CTG31	chr1_KI270765v1_alt	HSCHR1_4_CTG31	NT_187520.1	185285
KI270766.1	CHR_HSCHR1_2_CTG3	chr1_KI270766v1_alt	HSCHR1_2_CTG3	NT_187517.1	256271
KI270767.1	CHR_HSCHR2_1_CTG15	chr2_KI270767v1_alt	HSCHR2_1_CTG15	NT_187523.1	161578
KI270768.1	CHR_HSCHR2_3_CTG7_2	chr2_KI270768v1_alt	HSCHR2_3_CTG7_2	NT_187528.1	110099
KI270769.1	CHR_HSCHR2_1_CTG1	chr2_KI270769v1_alt	HSCHR2_1_CTG1	NT_187522.1	120616
KI270770.1	CHR_HSCHR2_2_CTG1	chr2_KI270770v1_alt	HSCHR2_2_CTG1	NT_187525.1	136240
KI270771.1	CHR_HSCHR2_4_CTG7_2	chr2_KI270771v1_alt	HSCHR2_4_CTG7_2	NT_187530.1	110395
KI270772.1	CHR_HSCHR2_1_CTG7	chr2_KI270772v1_alt	HSCHR2_1_CTG7	NT_187524.1	133041
KI270773.1	CHR_HSCHR2_3_CTG1	chr2_KI270773v1_alt	HSCHR2_3_CTG1	NT_187526.1	70887
KI270774.1	CHR_HSCHR2_4_CTG1	chr2_KI270774v1_alt	HSCHR2_4_CTG1	NT_187529.1	223625
KI270775.1	CHR_HSCHR2_5_CTG7_2	chr2_KI270775v1_alt	HSCHR2_5_CTG7_2	NT_187531.1	138019
KI270776.1	CHR_HSCHR2_3_CTG15	chr2_KI270776v1_alt	HSCHR2_3_CTG15	NT_187527.1	174166
KI270777.1	CHR_HSCHR3_2_CTG2_1	chr3_KI270777v1_alt	HSCHR3_2_CTG2_1	NT_187533.1	173649
KI270778.1	CHR_HSCHR3_3_CTG2_1	chr3_KI270778v1_alt	HSCHR3_3_CTG2_1	NT_187536.1	248252
KI270779.1	CHR_HSCHR3_1_CTG3	chr3_KI270779v1_alt	HSCHR3_1_CTG3	NT_187532.1	205312
KI270780.1	CHR_HSCHR3_4_CTG2_1	chr3_KI270780v1_alt	HSCHR3_4_CTG2_1	NT_187537.1	224108
KI270781.1	CHR_HSCHR3_5_CTG2_1	chr3_KI270781v1_alt	HSCHR3_5_CTG2_1	NT_187538.1	113034
KI270782.1	CHR_HSCHR3_2_CTG3	chr3_KI270782v1_alt	HSCHR3_2_CTG3	NT_187534.1	162429
KI270783.1	CHR_HSCHR3_3_CTG1	chr3_KI270783v1_alt	HSCHR3_3_CTG1	NT_187535.1	109187
KI270784.1	CHR_HSCHR3_9_CTG3	chr3_KI270784v1_alt	HSCHR3_9_CTG3	NT_187539.1	184404
KI270785.1	CHR_HSCHR4_2_CTG12	chr4_KI270785v1_alt	HSCHR4_2_CTG12	NT_187542.1	119912
KI270786.1	CHR_HSCHR4_3_CTG12	chr4_KI270786v1_alt	HSCHR4_3_CTG12	NT_187543.1	244096
KI270787.1	CHR_HSCHR4_1_CTG8_1	chr4_KI270787v1_alt	HSCHR4_1_CTG8_1	NT_187541.1	111943
KI270788.1	CHR_HSCHR4_4_CTG12	chr4_KI270788v1_alt	HSCHR4_4_CTG12	NT_187544.1	158965
KI270789.1	CHR_HSCHR4_5_CTG12	chr4_KI270789v1_alt	HSCHR4_5_CTG12	NT_187545.1	205944
KI270790.1	CHR_HSCHR4_1_CTG4	chr4_KI270790v1_alt	HSCHR4_1_CTG4	NT_187540.1	220246
KI270791.1	CHR_HSCHR5_3_CTG1	chr5_KI270791v1_alt	HSCHR5_3_CTG1	NT_187547.1	195710
KI270792.1	CHR_HSCHR5_4_CTG1	chr5_KI270792v1_alt	HSCHR5_4_CTG1	NT_187548.1	179043
KI270793.1	CHR_HSCHR5_5_CTG1	chr5_KI270793v1_alt	HSCHR5_5_CTG1	NT_187550.1	126136
KI270794.1	CHR_HSCHR5_6_CTG1	chr5_KI270794v1_alt	HSCHR5_6_CTG1	NT_187551.1	164558
KI270795.1	CHR_HSCHR5_2_CTG5	chr5_KI270795v1_alt	HSCHR5_2_CTG5	NT_187546.1	131892
KI270796.1	CHR_HSCHR5_4_CTG1_1	chr5_KI270796v1_alt	HSCHR5_4_CTG1_1	NT_187549.1	172708
KI270797.1	CHR_HSCHR6_1_CTG4	chr6_KI270797v1_alt	HSCHR6_1_CTG4	NT_187552.1	197536
KI270798.1	CHR_HSCHR6_1_CTG5	chr6_KI270798v1_alt	HSCHR6_1_CTG5	NT_187553.1	271782
KI270799.1	CHR_HSCHR6_1_CTG6	chr6_KI270799v1_alt	HSCHR6_1_CTG6	NT_187554.1	152148
KI270800.1	CHR_HSCHR6_1_CTG7	chr6_KI270800v1_alt	HSCHR6_1_CTG7	NT_187555.1	175808
KI270801.1	CHR_HSCHR6_1_CTG8	chr6_KI270801v1_alt	HSCHR6_1_CTG8	NT_187556.1	870480
KI270802.1	CHR_HSCHR6_1_CTG9	chr6_KI270802v1_alt	HSCHR6_1_CTG9	NT_187557.1	75005
KI270803.1	CHR_HSCHR7_2_CTG6	chr7_KI270803v1_alt	HSCHR7_2_CTG6	NT_187562.1	1111570
KI270804.1	CHR_HSCHR7_1_CTG1	chr7_KI270804v1_alt	HSCHR7_1_CTG1	NT_187558.1	157952
KI270805.1	CHR_HSCHR7_1_CTG7	chr7_KI270805v1_alt	HSCHR7_1_CTG7	NT_187560.1	209988
KI270806.1	CHR_HSCHR7_1_CTG4_4	chr7_KI270806v1_alt	HSCHR7_1_CTG4_4	NT_187559.1	158166
KI270807.1	CHR_HSCHR7_2_CTG7	chr7_KI270807v1_alt	HSCHR7_2_CTG7	NT_187563.1	126434
KI270808.1	CHR_HSCHR7_3_CTG6	chr7_KI270808v1_alt	HSCHR7_3_CTG6	NT_187564.1	271455
KI270809.1	CHR_HSCHR7_2_CTG4_4	chr7_KI270809v1_alt	HSCHR7_2_CTG4_4	NT_187561.1	209586
KI270810.1	CHR_HSCHR8_1_CTG7	chr8_KI270810v1_alt	HSCHR8_1_CTG7	NT_187567.1	374415
KI270811.1	CHR_HSCHR8_1_CTG1	chr8_KI270811v1_alt	HSCHR8_1_CTG1	NT_187565.1	292436
KI270812.1	CHR_HSCHR8_2_CTG1	chr8_KI270812v1_alt	HSCHR8_2_CTG1	NT_187568.1	282736
KI270813.1	CHR_HSCHR8_3_CTG1	chr8_KI270813v1_alt	HSCHR8_3_CTG1	NT_187570.1	300230
KI270814.1	CHR_HSCHR8_1_CTG6	chr8_KI270814v1_alt	HSCHR8_1_CTG6	NT_187566.1	141812
KI270815.1	CHR_HSCHR8_2_CTG7	chr8_KI270815v1_alt	HSCHR8_2_CTG7	NT_187569.1	132244
KI270816.1	CHR_HSCHR8_3_CTG7	chr8_KI270816v1_alt	HSCHR8_3_CTG7	NT_187571.1	305841
KI270817.1	CHR_HSCHR8_4_CTG7	chr8_KI270817v1_alt	HSCHR8_4_CTG7	NT_187573.1	158983
KI270818.1	CHR_HSCHR8_4_CTG1	chr8_KI270818v1_alt	HSCHR8_4_CTG1	NT_187572.1	145606
KI270819.1	CHR_HSCHR8_5_CTG7	chr8_KI270819v1_alt	HSCHR8_5_CTG7	NT_187574.1	133535
KI270820.1	CHR_HSCHR8_6_CTG7	chr8_KI270820v1_alt	HSCHR8_6_CTG7	NT_187575.1	36640
KI270821.1	CHR_HSCHR8_8_CTG1	chr8_KI270821v1_alt	HSCHR8_8_CTG1	NT_187576.1	985506
KI270822.1	CHR_HSCHR8_9_CTG1	chr8_KI270822v1_alt	HSCHR8_9_CTG1	NT_187577.1	624492
KI270823.1	CHR_HSCHR9_1_CTG5	chr9_KI270823v1_alt	HSCHR9_1_CTG5	NT_187578.1	439082
KI270824.1	CHR_HSCHR10_1_CTG3	chr10_KI270824v1_alt	HSCHR10_1_CTG3	NT_187579.1	181496
KI270825.1	CHR_HSCHR10_1_CTG4	chr10_KI270825v1_alt	HSCHR10_1_CTG4	NT_187580.1	188315
KI270826.1	CHR_HSCHR11_1_CTG2	chr11_KI270826v1_alt	HSCHR11_1_CTG2	NT_187581.1	186169
KI270827.1	CHR_HSCHR11_1_CTG3	chr11_KI270827v1_alt	HSCHR11_1_CTG3	NT_187582.1	67707
KI270829.1	CHR_HSCHR11_1_CTG5	chr11_KI270829v1_alt	HSCHR11_1_CTG5	NT_187583.1	204059
KI270830.1	CHR_HSCHR11_1_CTG6	chr11_KI270830v1_alt	HSCHR11_1_CTG6	NT_187584.1	177092
KI270831.1	CHR_HSCHR11_1_CTG7	chr11_KI270831v1_alt	HSCHR11_1_CTG7	NT_187585.1	296895
KI270832.1	CHR_HSCHR11_1_CTG8	chr11_KI270832v1_alt	HSCHR11_1_CTG8	NT_187586.1	210133
KI270833.1	CHR_HSCHR12_5_CTG2_1	chr12_KI270833v1_alt	HSCHR12_5_CTG2_1	NT_187589.1	76061
KI270834.1	CHR_HSCHR12_6_CTG2_1	chr12_KI270834v1_alt	HSCHR12_6_CTG2_1	NT_187590.1	119498
KI270835.1	CHR_HSCHR12_4_CTG2	chr12_KI270835v1_alt	HSCHR12_4_CTG2	NT_187587.1	238139
KI270836.1	CHR_HSCHR12_7_CTG2_1	chr12_KI270836v1_alt	HSCHR12_7_CTG2_1	NT_187591.1	56134
KI270837.1	CHR_HSCHR12_5_CTG2	chr12_KI270837v1_alt	HSCHR12_5_CTG2	NT_187588.1	40090
KI270838.1	CHR_HSCHR13_1_CTG1	chr13_KI270838v1_alt	HSCHR13_1_CTG1	NT_187592.1	306913
KI270839.1	CHR_HSCHR13_1_CTG2	chr13_KI270839v1_alt	HSCHR13_1_CTG2	NT_187593.1	180306
KI270840.1	CHR_HSCHR13_1_CTG3	chr13_KI270840v1_alt	HSCHR13_1_CTG3	NT_187594.1	191684
KI270841.1	CHR_HSCHR13_1_CTG4	chr13_KI270841v1_alt	HSCHR13_1_CTG4	NT_187595.1	169134
KI270842.1	CHR_HSCHR13_1_CTG5	chr13_KI270842v1_alt	HSCHR13_1_CTG5	NT_187596.1	37287
KI270843.1	CHR_HSCHR13_1_CTG6	chr13_KI270843v1_alt	HSCHR13_1_CTG6	NT_187597.1	103832
KI270844.1	CHR_HSCHR14_1_CTG1	chr14_KI270844v1_alt	HSCHR14_1_CTG1	NT_187598.1	322166
KI270845.1	CHR_HSCHR14_2_CTG1	chr14_KI270845v1_alt	HSCHR14_2_CTG1	NT_187599.1	180703
KI270846.1	CHR_HSCHR14_3_CTG1	chr14_KI270846v1_alt	HSCHR14_3_CTG1	NT_187600.1	1351393
KI270847.1	CHR_HSCHR14_7_CTG1	chr14_KI270847v1_alt	HSCHR14_7_CTG1	NT_187601.1	1511111
KI270848.1	CHR_HSCHR15_1_CTG3	chr15_KI270848v1_alt	HSCHR15_1_CTG3	NT_187603.1	327382
KI270849.1	CHR_HSCHR15_3_CTG8	chr15_KI270849v1_alt	HSCHR15_3_CTG8	NT_187605.1	244917
KI270850.1	CHR_HSCHR15_5_CTG8	chr15_KI270850v1_alt	HSCHR15_5_CTG8	NT_187606.1	430880
KI270851.1	CHR_HSCHR15_3_CTG3	chr15_KI270851v1_alt	HSCHR15_3_CTG3	NT_187604.1	263054
KI270852.1	CHR_HSCHR15_1_CTG1	chr15_KI270852v1_alt	HSCHR15_1_CTG1	NT_187602.1	478999
KI270853.1	CHR_HSCHR16_1_CTG1	chr16_KI270853v1_alt	HSCHR16_1_CTG1	NT_187607.1	2659700
KI270854.1	CHR_HSCHR16_CTG2	chr16_KI270854v1_alt	HSCHR16_CTG2	NT_187610.1	134193
KI270855.1	CHR_HSCHR16_3_CTG1	chr16_KI270855v1_alt	HSCHR16_3_CTG1	NT_187608.1	232857
KI270856.1	CHR_HSCHR16_4_CTG1	chr16_KI270856v1_alt	HSCHR16_4_CTG1	NT_187609.1	63982
KI270857.1	CHR_HSCHR17_7_CTG4	chr17_KI270857v1_alt	HSCHR17_7_CTG4	NT_187614.1	2877074
KI270858.1	CHR_HSCHR17_8_CTG4	chr17_KI270858v1_alt	HSCHR17_8_CTG4	NT_187615.1	235827
KI270859.1	CHR_HSCHR17_9_CTG4	chr17_KI270859v1_alt	HSCHR17_9_CTG4	NT_187616.1	108763
KI270860.1	CHR_HSCHR17_1_CTG9	chr17_KI270860v1_alt	HSCHR17_1_CTG9	NT_187612.1	178921
KI270861.1	CHR_HSCHR17_1_CTG2	chr17_KI270861v1_alt	HSCHR17_1_CTG2	NT_187611.1	196688
KI270862.1	CHR_HSCHR17_2_CTG2	chr17_KI270862v1_alt	HSCHR17_2_CTG2	NT_187613.1	391357
KI270863.1	CHR_HSCHR18_3_CTG2_1	chr18_KI270863v1_alt	HSCHR18_3_CTG2_1	NT_187617.1	167999
KI270864.1	CHR_HSCHR18_4_CTG1_1	chr18_KI270864v1_alt	HSCHR18_4_CTG1_1	NT_187618.1	111737
KI270865.1	CHR_HSCHR19_4_CTG2	chr19_KI270865v1_alt	HSCHR19_4_CTG2	NT_187621.1	52969
KI270866.1	CHR_HSCHR19_2_CTG3_1	chr19_KI270866v1_alt	HSCHR19_2_CTG3_1	NT_187619.1	43156
KI270867.1	CHR_HSCHR19_3_CTG3_1	chr19_KI270867v1_alt	HSCHR19_3_CTG3_1	NT_187620.1	233762
KI270868.1	CHR_HSCHR19_5_CTG2	chr19_KI270868v1_alt	HSCHR19_5_CTG2	NT_187622.1	61734
KI270869.1	CHR_HSCHR20_1_CTG2	chr20_KI270869v1_alt	HSCHR20_1_CTG2	NT_187623.1	118774
KI270870.1	CHR_HSCHR20_1_CTG3	chr20_KI270870v1_alt	HSCHR20_1_CTG3	NT_187624.1	183433
KI270871.1	CHR_HSCHR20_1_CTG4	chr20_KI270871v1_alt	HSCHR20_1_CTG4	NT_187625.1	58661
KI270872.1	CHR_HSCHR21_5_CTG2	chr21_KI270872v1_alt	HSCHR21_5_CTG2	NT_187626.1	82692
KI270873.1	CHR_HSCHR21_6_CTG1_1	chr21_KI270873v1_alt	HSCHR21_6_CTG1_1	NT_187627.1	143900
KI270874.1	CHR_HSCHR21_8_CTG1_1	chr21_KI270874v1_alt	HSCHR21_8_CTG1_1	NT_187628.1	166743
KI270875.1	CHR_HSCHR22_1_CTG3	chr22_KI270875v1_alt	HSCHR22_1_CTG3	NT_187629.1	259914
KI270876.1	CHR_HSCHR22_1_CTG4	chr22_KI270876v1_alt	HSCHR22_1_CTG4	NT_187630.1	263666
KI270877.1	CHR_HSCHR22_1_CTG5	chr22_KI270877v1_alt	HSCHR22_1_CTG5	NT_187631.1	101331
KI270878.1	CHR_HSCHR22_1_CTG6	chr22_KI270878v1_alt	HSCHR22_1_CTG6	NT_187632.1	186262
KI270879.1	CHR_HSCHR22_1_CTG7	chr22_KI270879v1_alt	HSCHR22_1_CTG7	NT_187633.1	304135
KI270880.1	CHR_HSCHRX_1_CTG3	chrX_KI270880v1_alt	HSCHRX_1_CTG3	NT_187634.1	284869
KI270881.1	CHR_HSCHRX_2_CTG12	chrX_KI270881v1_alt	HSCHRX_2_CTG12	NT_187635.1	144206
KI270882.1	CHR_HSCHR19KIR_FH15_B_HAP_CTG3_1	chr19_KI270882v1_alt	HSCHR19KIR_FH15_B_HAP_CTG3_1	NT_187636.1	248807
KI270883.1	CHR_HSCHR19KIR_G085_A_HAP_CTG3_1	chr19_KI270883v1_alt	HSCHR19KIR_G085_A_HAP_CTG3_1	NT_187637.1	170399
KI270884.1	CHR_HSCHR19KIR_G085_BA1_HAP_CTG3_1	chr19_KI270884v1_alt	HSCHR19KIR_G085_BA1_HAP_CTG3_1	NT_187638.1	157053
KI270885.1	CHR_HSCHR19KIR_G248_A_HAP_CTG3_1	chr19_KI270885v1_alt	HSCHR19KIR_G248_A_HAP_CTG3_1	NT_187639.1	171027
KI270886.1	CHR_HSCHR19KIR_G248_BA2_HAP_CTG3_1	chr19_KI270886v1_alt	HSCHR19KIR_G248_BA2_HAP_CTG3_1	NT_187640.1	204239
KI270887.1	CHR_HSCHR19KIR_GRC212_AB_HAP_CTG3_1	chr19_KI270887v1_alt	HSCHR19KIR_GRC212_AB_HAP_CTG3_1	NT_187641.1	209512
KI270888.1	CHR_HSCHR19KIR_GRC212_BA1_HAP_CTG3_1	chr19_KI270888v1_alt	HSCHR19KIR_GRC212_BA1_HAP_CTG3_1	NT_187642.1	155532
KI270889.1	CHR_HSCHR19KIR_LUCE_A_HAP_CTG3_1	chr19_KI270889v1_alt	HSCHR19KIR_LUCE_A_HAP_CTG3_1	NT_187643.1	170698
KI270890.1	CHR_HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1	chr19_KI270890v1_alt	HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1	NT_187644.1	184499
KI270891.1	CHR_HSCHR19KIR_RSH_A_HAP_CTG3_1	chr19_KI270891v1_alt	HSCHR19KIR_RSH_A_HAP_CTG3_1	NT_187645.1	170680
KI270892.1	CHR_HSCHR1_ALT2_1_CTG32_1	chr1_KI270892v1_alt	HSCHR1_ALT2_1_CTG32_1	NT_187646.1	162212
KI270893.1	CHR_HSCHR2_2_CTG15	chr2_KI270893v1_alt	HSCHR2_2_CTG15	NT_187647.1	161218
KI270894.1	CHR_HSCHR2_2_CTG7	chr2_KI270894v1_alt	HSCHR2_2_CTG7	NT_187648.1	214158
KI270895.1	CHR_HSCHR3_3_CTG3	chr3_KI270895v1_alt	HSCHR3_3_CTG3	NT_187649.1	162896
KI270896.1	CHR_HSCHR4_6_CTG12	chr4_KI270896v1_alt	HSCHR4_6_CTG12	NT_187650.1	378547
KI270897.1	CHR_HSCHR5_1_CTG1_1	chr5_KI270897v1_alt	HSCHR5_1_CTG1_1	NT_187651.1	1144418
KI270898.1	CHR_HSCHR5_3_CTG5	chr5_KI270898v1_alt	HSCHR5_3_CTG5	NT_187652.1	130957
KI270899.1	CHR_HSCHR7_2_CTG1	chr7_KI270899v1_alt	HSCHR7_2_CTG1	NT_187653.1	190869
KI270900.1	CHR_HSCHR8_5_CTG1	chr8_KI270900v1_alt	HSCHR8_5_CTG1	NT_187654.1	318687
KI270901.1	CHR_HSCHR8_6_CTG1	chr8_KI270901v1_alt	HSCHR8_6_CTG1	NT_187655.1	136959
KI270902.1	CHR_HSCHR11_2_CTG1	chr11_KI270902v1_alt	HSCHR11_2_CTG1	NT_187656.1	106711
KI270903.1	CHR_HSCHR11_2_CTG1_1	chr11_KI270903v1_alt	HSCHR11_2_CTG1_1	NT_187657.1	214625
KI270904.1	CHR_HSCHR12_3_CTG2	chr12_KI270904v1_alt	HSCHR12_3_CTG2	NT_187658.1	572349
KI270905.1	CHR_HSCHR15_4_CTG8	chr15_KI270905v1_alt	HSCHR15_4_CTG8	NT_187660.1	5161414
KI270906.1	CHR_HSCHR15_2_CTG3	chr15_KI270906v1_alt	HSCHR15_2_CTG3	NT_187659.1	196384
KI270907.1	CHR_HSCHR17_2_CTG1	chr17_KI270907v1_alt	HSCHR17_2_CTG1	NT_187662.1	137721
KI270908.1	CHR_HSCHR17_2_CTG5	chr17_KI270908v1_alt	HSCHR17_2_CTG5	NT_187663.1	1423190
KI270909.1	CHR_HSCHR17_10_CTG4	chr17_KI270909v1_alt	HSCHR17_10_CTG4	NT_187661.1	325800
KI270910.1	CHR_HSCHR17_3_CTG2	chr17_KI270910v1_alt	HSCHR17_3_CTG2	NT_187664.1	157099
KI270911.1	CHR_HSCHR18_ALT2_CTG2_1	chr18_KI270911v1_alt	HSCHR18_ALT2_CTG2_1	NT_187666.1	157710
KI270912.1	CHR_HSCHR18_ALT21_CTG2_1	chr18_KI270912v1_alt	HSCHR18_ALT21_CTG2_1	NT_187665.1	174061
KI270913.1	CHR_HSCHRX_2_CTG3	chrX_KI270913v1_alt	HSCHRX_2_CTG3	NT_187667.1	274009
KI270914.1	CHR_HSCHR19KIR_RSH_BA2_HAP_CTG3_1	chr19_KI270914v1_alt	HSCHR19KIR_RSH_BA2_HAP_CTG3_1	NT_187668.1	205194
KI270915.1	CHR_HSCHR19KIR_T7526_A_HAP_CTG3_1	chr19_KI270915v1_alt	HSCHR19KIR_T7526_A_HAP_CTG3_1	NT_187669.1	170665
KI270916.1	CHR_HSCHR19KIR_T7526_BDEL_HAP_CTG3_1	chr19_KI270916v1_alt	HSCHR19KIR_T7526_BDEL_HAP_CTG3_1	NT_187670.1	184516
KI270917.1	CHR_HSCHR19KIR_ABC08_A1_HAP_CTG3_1	chr19_KI270917v1_alt	HSCHR19KIR_ABC08_A1_HAP_CTG3_1	NT_187671.1	190932
KI270918.1	CHR_HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1	chr19_KI270918v1_alt	HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1	NT_187672.1	123111
KI270919.1	CHR_HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1	chr19_KI270919v1_alt	HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1	NT_187673.1	170701
KI270920.1	CHR_HSCHR19KIR_FH05_A_HAP_CTG3_1	chr19_KI270920v1_alt	HSCHR19KIR_FH05_A_HAP_CTG3_1	NT_187674.1	198005
KI270921.1	CHR_HSCHR19KIR_FH05_B_HAP_CTG3_1	chr19_KI270921v1_alt	HSCHR19KIR_FH05_B_HAP_CTG3_1	NT_187675.1	282224
KI270922.1	CHR_HSCHR19KIR_FH06_A_HAP_CTG3_1	chr19_KI270922v1_alt	HSCHR19KIR_FH06_A_HAP_CTG3_1	NT_187676.1	187935
KI270923.1	CHR_HSCHR19KIR_FH06_BA1_HAP_CTG3_1	chr19_KI270923v1_alt	HSCHR19KIR_FH06_BA1_HAP_CTG3_1	NT_187677.1	189352
KI270924.1	CHR_HSCHR3_4_CTG3	chr3_KI270924v1_alt	HSCHR3_4_CTG3	NT_187678.1	166540
KI270925.1	CHR_HSCHR4_7_CTG12	chr4_KI270925v1_alt	HSCHR4_7_CTG12	NT_187679.1	555799
KI270926.1	CHR_HSCHR8_7_CTG1	chr8_KI270926v1_alt	HSCHR8_7_CTG1	NT_187680.1	229282
KI270927.1	CHR_HSCHR11_3_CTG1	chr11_KI270927v1_alt	HSCHR11_3_CTG1	NT_187681.1	218612
KI270928.1	CHR_HSCHR22_3_CTG1	chr22_KI270928v1_alt	HSCHR22_3_CTG1	NT_187682.1	176103
KI270929.1	CHR_HSCHR19KIR_FH08_A_HAP_CTG3_1	chr19_KI270929v1_alt	HSCHR19KIR_FH08_A_HAP_CTG3_1	NT_187683.1	186203
KI270930.1	CHR_HSCHR19KIR_FH08_BAX_HAP_CTG3_1	chr19_KI270930v1_alt	HSCHR19KIR_FH08_BAX_HAP_CTG3_1	NT_187684.1	200773
KI270931.1	CHR_HSCHR19KIR_FH13_A_HAP_CTG3_1	chr19_KI270931v1_alt	HSCHR19KIR_FH13_A_HAP_CTG3_1	NT_187685.1	170148
KI270932.1	CHR_HSCHR19KIR_FH13_BA2_HAP_CTG3_1	chr19_KI270932v1_alt	HSCHR19KIR_FH13_BA2_HAP_CTG3_1	NT_187686.1	215732
KI270933.1	CHR_HSCHR19KIR_FH15_A_HAP_CTG3_1	chr19_KI270933v1_alt	HSCHR19KIR_FH15_A_HAP_CTG3_1	NT_187687.1	170537
KI270934.1	CHR_HSCHR3_5_CTG3	chr3_KI270934v1_alt	HSCHR3_5_CTG3	NT_187688.1	163458
KI270935.1	CHR_HSCHR3_6_CTG3	chr3_KI270935v1_alt	HSCHR3_6_CTG3	NT_187689.1	197351
KI270936.1	CHR_HSCHR3_7_CTG3	chr3_KI270936v1_alt	HSCHR3_7_CTG3	NT_187690.1	164170
KI270937.1	CHR_HSCHR3_8_CTG3	chr3_KI270937v1_alt	HSCHR3_8_CTG3	NT_187691.1	165607
KI270938.1	CHR_HSCHR19_4_CTG3_1	chr19_KI270938v1_alt	HSCHR19_4_CTG3_1	NT_187693.1	1066800
```

## 準備

180502時点で、UCSCのGRCh38/hg38のゲノムのversionはGCA_000001405.15 (Dec. 2013)なので、これとEnsemblのbiomartを併せる必要がある。きっとなんか良いツールがある気もするけど、データの中身を見ながら泥臭くやる。

[UCSC](http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=666918361_uSAYsrdidZ665KXQFmDHDyZsP6qI&db=hg38&position=lastDbPos,"Dec.2013 (GRCh38/hg38)")のページをみると、

>UCSC Genome Browser assembly ID: hg38
Sequencing/Assembly provider ID: Genome Reference Consortium Human GRCh38 (GCA_000001405.15)
Assembly date: Dec. 2013
Accession ID: GCA_000001405.15

になっていて、アセンブリのAccession IDが`GCA_000001405.15`であることがわかる。

NCBIでこれを探す。
https://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15/

該当するのは`GCF_000001405.26`。ページにも[assembly_report.txt](ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/GCF_000001405.26_GRCh38_assembly_report.txt,"GCF_000001405.26_GRCh38_assembly_report.txt")にも、

>\# GenBank assembly accession: GCA_000001405.15
 \# RefSeq assembly accession: GCF_000001405.26
 \# RefSeq assembly and GenBank assemblies identical: yes

になっている。

[Ensembl](http://www.ensembl.org/)のarchiveはこんな感じになっている。（180502時点のLatestは[release 92](http://Apr2018.archive.ensembl.org/index.html)なのでGRCh38.p12）
>	Ensembl GRCh37: Full Feb 2014 archive with BLAST, VEP and BioMart
	Ensembl 91: Dec 2017 (GRCh38.p10)
	Ensembl 90: Aug 2017 (GRCh38.p10) - patched/updated gene set Jun 2017
	Ensembl 89: May 2017 (GRCh38.p10) - patched/updated gene set Jan 2017
	Ensembl 88: Mar 2017 (GRCh38.p10)
	Ensembl 87: Dec 2016 (GRCh38.p7)
	Ensembl 86: Oct 2016 (GRCh38.p7)
	Ensembl 85: Jul 2016 (GRCh38.p7) - patched/updated gene set Jun 2016
	Ensembl 84: Mar 2016 (GRCh38.p5)
	Ensembl 83: Dec 2015 (GRCh38.p5) - patched/updated gene set Oct 2015
	Ensembl 82: Sep 2015 (GRCh38.p3)
	Ensembl 81: Jul 2015 (GRCh38.p3) - patched/updated gene set Jun 2015
	Ensembl 80: May 2015 (GRCh38.p2) - patched/updated gene set Jan 2015
	Ensembl 79: Mar 2015 (GRCh38.p2)
	Ensembl 78: Dec 2014 (GRCh38)
	Ensembl 77: Oct 2014 (GRCh38) - patched/updated gene set Aug 2014
	Ensembl 76: Aug 2014 (GRCh38) - gene set updated Jul 2014
	Ensembl 75: Feb 2014 (GRCh37.p13)
	Ensembl 74: Dec 2013 (GRCh37.p13) - patched/updated gene set Sep 2013
	Ensembl 67: May 2012 (GRCh37.p7) - patched/updated gene set Feb 2012
	Ensembl 54: May 2009 (NCBI 36) - patched/updated gene set Oct 2008
 
EnsemblのGRCh38/hg38の最終版は[Ensembl release 78](http://Dec2014.archive.ensembl.org/index.html)になる。
それ以降のreleasaeはpatchがつくのでめんどくさい。

ためしに[Ensemblのarchiveのbiomart](http://Dec2014.archive.ensembl.org/biomart/martview,"release 78 biomart")からデータ落とすと、HSCHR10_1_CTG1がCHR_HSCHR10_1_CTG1みたいに「HSCHR」で始まるものにはすべて「CHR_」がついてるし、「LRG_...」とかなに？ってなるし、CHR_HG142_HG150_NOVEL_TESTとかCHR_HG151_NOVEL_TESTとかまでいる。

ただEnsemblのGRCh38/hg38だと、染色体名がちょっとNCBIと違う感じになってたりする。しかEnsembl（というかEBIのENA）の[GCA_000001405.15_sequence_report.txt](https://www.ebi.ac.uk/ena/data/downloadftp?url=ftp://ftp.ebi.ac.uk/pub/databases/ena/assembly/GCA_000/GCA_000001/GCA_000001405.15_sequence_report.txt)では同じになってるのに、biomartで落としてくると変わってる。。。


|Ensembl78 GRCh38/hg38|UCSC GRCh38/hg38|NCBI (Name, GenBank, RefSeq)|
|:-----------:|:------------:|:------------:|
|1|chr1|1, CM000663.2, NC_000001.11|
|MT|chrM|MT, J01415.2, NC_012920.1
|CHR_HSCHR1_CTG1_UNLOCALIZED|chr1_KI270706v1_random|HSCHR1_CTG1_UNLOCALIZED, KI270706.1, T_187361.1|
|CHR_HSCHR2_RANDOM_CTG1|chr2_KI270715v1_random|HSCHR2_RANDOM_CTG1, KI270715.1, NT_187370.1|
|GL000008.2|chr4_GL000008v2_random|HSCHR4_RANDOM_CTG4, GL000008.2, NT_113793.3|
|GL000195.1|chrUn_GL000195v1|HSCHRUN_RANDOM_CTG1, GL000195.1, NT_113901.1|
|KI270734.1|chr22_KI270734v1_random|HSCHR22_UNLOCALIZED_CTG4, KI270734.1, NT_187389.1|
|KI270442.1|chrUn_KI270442v1|HSCHRUN_RANDOM_124, KI270442.1, NT_187420.1|

## 作業

ひとまず、NCBIで該当する[GCF_000001405.26のassembly_report](ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/GCF_000001405.26_GRCh38_assembly_report.txt,"GCF_000001405.26_GRCh38_assembly_report.txt")から情報を流用する。
これは実際はUCSCの_assembly_report.txtと同一なのと、このなかに`Sequence-Name`と`GenBank-Accn`と`RefSeq-Accn`と`Sequence-Length`が`UCSC-style-name`と一緒にそろっている。「HSCHR→CHR_HSCHR」だけ気をつければよいのでは。

Ensemblの[GCA_000001405.15_sequence_report.txt](https://www.ebi.ac.uk/ena/data/downloadftp?url=ftp://ftp.ebi.ac.uk/pub/databases/ena/assembly/GCA_000/GCA_000001/GCA_000001405.15_sequence_report.txt,"GCA_000001405.15_sequence_report.txt")と、NCBIの[GCF_000001405.26_GRCh38_assembly_report.txt](ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/GCF_000001405.26_GRCh38_assembly_report.txt,"GCF_000001405.26_GRCh38_assembly_report.txt")をみると、`GenBank accn`はどちらもそろっている。あとlengthもある。UCSCも[hg38.chrom.sizes.txt](http://genome.ucsc.edu/cgi-bin/hgTracks?chromInfoPage=&hgsid=666918361_uSAYsrdidZ665KXQFmDHDyZsP6qI,"hg38.chrom.sizes.txt")があるので、落としもらしの確認はできる。

shellであつかうときは、NCBIのGCF_000001405.26_GRCh38_assembly_report.txtが改行アレなので、`nkf --unix`とかしておく。

GenBank accnでjoinしてlengthと名前を確認、みたいな感じか。

```
 $ less NCBI_GRCh38_GCA_000001405.15/GCF_000001405.26_GRCh38_assembly_report.txt | nkf --unix | grep -v "^\#" | perl -ne 'chomp;@l=split(/\t/);print join("\t",@l[4,9,0,2,6,8])."\n";' | sort -u > temp_ncbi.txt

CM000663.2	chr1	1	1	NC_000001.11	248956422
CM000664.2	chr2	2	2	NC_000002.12	242193529
CM000665.2	chr3	3	3	NC_000003.12	198295559
CM000666.2	chr4	4	4	NC_000004.12	190214555
CM000667.2	chr5	5	5	NC_000005.10	181538259
...
KI270935.1	chr3_KI270935v1_alt	HSCHR3_6_CTG3	3	NT_187689.1	197351
KI270936.1	chr3_KI270936v1_alt	HSCHR3_7_CTG3	3	NT_187690.1	164170
KI270937.1	chr3_KI270937v1_alt	HSCHR3_8_CTG3	3	NT_187691.1	165607
KI270938.1	chr19_KI270938v1_alt	HSCHR19_4_CTG3_1	19	NT_187693.1	1066800

 $ less Ensembl_release78_GRCh38_GCA_000001405.15/GCA_000001405.15_sequence_report.txt | nkf --unix | grep -v "^accession" | perl -ne 'chomp;@l=split(/\t/);$l[1]=~s/HSCHR/CHR_HSCHR/;print join("\t",@l[0,1,4,2])."\n";' | sort -u > temp_ensembl.txt

CM000663.2	1	1	248956422
CM000664.2	2	2	242193529
CM000665.2	3	3	198295559
CM000666.2	4	4	190214555
...
KI270935.1	CHR_HSCHR3_6_CTG3	3	197351
KI270936.1	CHR_HSCHR3_7_CTG3	3	164170
KI270937.1	CHR_HSCHR3_8_CTG3	3	165607
KI270938.1	CHR_HSCHR19_4_CTG3_1	19	1066800

 $ less UCSC_hg38_GCA_000001405.15/hg38.chrom.sizes.txt | sort -u > temp_ucsc.txt
 
chr1	248956422
chr10	133797422
chr10_GL383545v1_alt	179254
chr10_GL383546v1_alt	309802
...
chrX_KI270881v1_alt	144206
chrX_KI270913v1_alt	274009
chrY	57227415
chrY_KI270740v1_random	37240

 $ wc temp_*
     455    1820   18907 temp_ensembl.txt
     455    2730   31541 temp_ncbi.txt
     455     910   11672 temp_ucsc.txt
    1365    5460   60408 total

 $ join -a 1 -t "	" temp_ensembl.txt temp_ncbi.txt | perl -ne 'chomp;@l=split(/\t/);print join("\t",($l[4],@l))."\n";' | sort -u > temp_ens_ncbi.txt

 $ wc temp_*
     455    4550   54096 temp_ens_ncbi.txt
     455    1820   18907 temp_ensembl.txt
     455    2730   31541 temp_ncbi.txt
     455     910   11672 temp_ucsc.txt
    1820   10010  114504 total

 $ join -a 1 -t "	" temp_ens_ncbi.txt temp_ucsc.txt | cut -f 2- | sort -u > TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt

 $ wc TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt
     455    4550   48466 TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.tx

```


いちおうchoromosome lengthが同じか確認。めんどくさいので横着する。

```
 $ less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f4,9,10
248956422	248956422	248956422
242193529	242193529	242193529
198295559	198295559	198295559
...
164170	164170	164170
165607	165607	165607
1066800	1066800	1066800

 $ diff --report <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f4) <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f9)
Files /dev/fd/11 and /dev/fd/12 are identical

 $ diff --report <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f4) <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f10)
Files /dev/fd/11 and /dev/fd/12 are identical
```


ただbiomartのdataにあてて確認してみると出来ないのがけっこうある。biomartで適当にダウンロードして、あわせてみる。

```
 $ gzcat martquery_0501xxxxxx_xxx.txt.gz | grep -v "^Chromosome" | cut -f1 | sort -u > list_ens78_biomart_chr.txt
 
 $ less list_ens78_biomart_chr.txt | wc
      802     802    9134
     
 $ less list_ens78_biomart_chr.txt | grep -v LRG | grep -v _NOVEL_TEST | wc
     268     268    4931
```

そもそもbiomartのentryが実際はすくない。

```
 $ join -a 1 <(less list_ens78_biomart_chr.txt | sort -u) <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f2 | sort -u | perl -pe 's/$/\tOK/;') | grep -v OK$ | grep -v LRG | grep -v _NOVEL_TEST > list_ens78_biomart_chr_unmatched.txt
 
 $ wc list_ens78_biomart_chr_unmatched.txt
      34      34     374 list_ens78_biomart_chr_unmatched.txt

GL000008.2
GL000009.2
GL000194.1
...
KI270744.1
KI270750.1
KI270752.1

```


これらはGenbank accnのままなのか。別途なんとかしないとだめか。あとLRGとかもちゃんとしなきゃだめか。

```
 $ less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | grep -v -f list_ens78_biomart_chr_unmatched.txt > temp_TABLE_matched.txt

 $ less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | grep -f list_ens78_biomart_chr_unmatched.txt > temp_TABLE_unmatched.txt

 $ wc temp_TABLE_matched.txt temp_TABLE_unmatched.txt 
     421    4210   44417 temp_TABLE_matched.txt
      34     340    4049 temp_TABLE_unmatched.txt
     455    4550   48466 total 
     
 $ cat temp_TABLE_matched.txt <(cat temp_TABLE_unmatched.txt | perl -ne 'chomp;@l=split(/\t/);print join("\t",@l[0,0,2..$#l])."\n";') | sort -u > TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt
     
 $ wc TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt
     455    4550   47939 TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt
     
 $ join <(less list_ens78_biomart_chr.txt | sort -u) <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt | cut -f2 | sort -u | perl -pe 's/$/\tOK/;' | sort -u) | grep OK | wc
     268     536    5735

```

これでもうライフゼロ。いちおうコンバートできるだけのTABLEにはなったのではないか。。。
上述のTableを出力する。

```
less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt | cut -f1,2,5,6,8,9

```


## あとがき


あとはこのTABLEをつかって、以下みたいなhashの対応表つくって入れ替えちゃえばよい。

```
 $ cut -f2,5 TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt | perl -pe 's/^/\"/;s/\t/\"\ \=\>\ \"/;s/$/\"\,/;'
"1" => "chr1",
"2" => "chr2",
"3" => "chr3",
...
"CHR_HSCHR3_7_CTG3" => "chr3_KI270936v1_alt",
"CHR_HSCHR3_8_CTG3" => "chr3_KI270937v1_alt",
"CHR_HSCHR19_4_CTG3_1" => "chr19_KI270938v1_alt",
```

ダウンロードしたbiomartのデータなんかは、LRGとかそういうのは該当するhashがなければすべてNotAvailableみたいな名前に変換して、`grep -v`とかで一気にomitしちゃえばいいのでは、という目論見。

LRGとかは今後の課題。[ここ](https://www.lrg-sequence.org/downloads)とか[ここ](https://www.lrg-sequence.org/LRG)とかのデータつかってコンバートするようにするか。そもそもLiftOverとかそういう機能ないのかな。。。