OctoReasoner/verl_codeql1_aggressive_filtered huggingface dataset:
system: You are an expert security code reviewer. You will be shown a source code file. Your task is to name the single function or class that contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the exact function or class name (no parentheses, no qualifiers, no module prefixes), wrapped in \boxed{...}. Example: `\boxed{salted_hmac}`. Output the boxed name ONLY -- no explanation, no other text.

user: ```python
import flask

from fence.auth import get_user_from_claims
from fence.errors import Unauthorized
from fence.jwt import token
from fence.jwt.errors import JWTError
from fence.jwt.validate import validate_jwt
from fence.models import UserRefreshToken


def create_access_token(user, keypair, api_key, expires_in, scopes):
    try:
        claims = validate_jwt(api_key, scope=scopes, purpose="api_key")
        if not set(claims["scope"]).issuperset(scopes):
            raise JWTError("cannot issue access token with scope beyond refresh token")
    except Exception as e:
        return flask.jsonify({"errors": str(e)})
    return token.generate_signed_access_token(
        keypair.kid, keypair.private_key, expires_in, scopes, user=user
    ).token


def create_api_key(user_id, keypair, expires_in, scopes, client_id):
    jwt_result = token.generate_api_key(
        keypair.kid, keypair.private_key, user_id, expires_in, scopes, client_id
    )
    with flask.current_app.db.session as session:
        session.add(
            UserRefreshToken(
                jti=jwt_result.claims["jti"],
                userid=user_id,
                expires=jwt_result.claims["exp"],
            )
        )
        session.commit()
    return jwt_result.token, jwt_result.claims


def create_session_token(keypair, expires_in, context=None):
    return token.generate_signed_session_token(
        keypair.kid, keypair.private_key, expires_in, context
    ).token


def create_user_access_token(keypair, api_key, expires_in):
    """
    create access token given a user's api key
    Args:
        keypair: RSA keypair for signing jwt
        api_key: user created jwt token, the azp should match with user.id
        expires_in: expiration time in seconds
    Return:
        access token
    """
    try:
        claims = validate_jwt(api_key, scope={"fence"}, purpose="api_key")
        # scopes = claims["scope"]

        ##### begin api key patch block #####
        # TODO: In the next release, remove this block and uncomment line above.
        # Old API keys are not compatible with new validation
        # This is to help transition
        try:
            scopes = claims["scope"]
        except KeyError as e:
            scopes = claims["aud"]
        ##### end api key patch block #####

        user = get_user_from_claims(claims)
    except Exception as e:
        raise Unauthorized(str(e))
    return token.generate_signed_access_token(
        keypair.kid, keypair.private_key, expires_in, scopes, user=user
    ).token

```

Name the function or class in this code that contains a `CWE-209: Generation of Error Message Containing Sensitive Information` vulnerability.
Answer: create_access_token
system: You are an expert security code reviewer. You will be shown a source code file. Your task is to name the single function or class that contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the exact function or class name (no parentheses, no qualifiers, no module prefixes), wrapped in \boxed{...}. Example: `\boxed{salted_hmac}`. Output the boxed name ONLY -- no explanation, no other text.

user: ```python
# -*- coding: utf-8 -*-

import sys
import getpass
import click
from sqlalchemy.orm.exc import NoResultFound
from flask.cli import AppGroup
from redap.models.apikey import APIKey
from redap.exceptions import InvalidConfiguration

try:
    from redap.api import create_app

    app = create_app()
except InvalidConfiguration as error:
    sys.stderr.write("Configuration file '{0}' failed validation: \n{1}".format(error.file, error.cause))
    sys.exit(4)


key_cli = AppGroup('auth', help='Manage API keys')


def generate_apikey_table(api_keys):
    table = list()
    table.append('\nAPI key{0}Description'.format(' ' * 58))
    table.append('{0} {1}'.format('=' * 64, '=' * 16))

    for api_key in api_keys:
        enabled = '' if api_key.enabled else '*'
        table.append('{0}{1} {2}'.format(api_key.key, enabled, api_key.description))

    return '\n'.join(table)


@key_cli.command('add')
@click.argument('description')
def add_key(description):
    new_key = APIKey.add({
        'created_by': '{0} (from CLI)'.format(getpass.getuser()),
        'description': description
    })

    app.logger.info('Added new API key: {0}'.format(new_key.description))
    sys.stdout.write('Created: {0}\n'.format(new_key.key))


@key_cli.command('del')
@click.argument('key')
def del_key(key):
    try:
        APIKey.delete(key)
        sys.stdout.write('Deleted: {0}'.format(key))
        app.logger.info('Deleted API key: {0}'.format(key))
    except NoResultFound:
        sys.stderr.write('No such key')


@key_cli.command('get')
@click.argument('key', required=False)
def get_keys(key=None):
    try:
        if key:
            sys.stdout.write(APIKey.get_one(key, as_json=True))
        else:
            sys.stdout.write(generate_apikey_table(APIKey.get_many()))
            sys.stdout.write('\n\nUse `get <key>` for details about a specific key\n')

    except NoResultFound:
        sys.stderr.write('No such key')


app.cli.add_command(key_cli)

```

Name the function or class in this code that contains a `CWE-312: Cleartext Storage of Sensitive Information` vulnerability.
Answer: get_keys
system: You are an expert security code reviewer. You will be shown a source code file along with a multiple-choice question listing several function or class names from that file. Your task is to identify which one contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the single letter of the correct option, wrapped in \boxed{...}. Example: `\boxed{B}`. Output the boxed letter ONLY -- no explanation, no other text.

user: ```python
import merge_similarity_inference
from flask import Flask, flash, request, jsonify, render_template, send_from_directory, redirect, url_for
import os
import glob
from werkzeug import secure_filename
app = Flask(__name__, static_folder='',template_folder='demo')

UPLOAD_FOLDER = "data/uploads/"

root = ''

@app.route('/<path:path>', methods=['GET'])
def static_proxy(path):
    return send_from_directory(root, path)

@app.route('/',methods=['GET'])
def query_file():
    vid = request.args.get('filename', None)
    k = request.args.get('k', None)
    assert int(k), "k is not an integer"
    if vid:
        if k:
            search_results = predict(int(k),"data/UCF101/"+vid)
        else:
            search_results = predict("data/UCF101/"+vid)
        print(vid,k)
        print(search_results)
        return render_template("index.html",vid_input=vid, similar_vids=search_results)
    else:
        print("Error")
        return render_template("index.html")

def predict(k=5,video_path=None):
    if not video_path:
        print("Oops, no video path.")
    prediction = merge_similarity_inference.merge_similarity_ucf_video(video_path, k=k, verbose=True ,newVid=False)
    return prediction

@app.route('/uploader',methods=['GET','POST'])
def upload_vid():
    if request.method == 'POST':
        try:
            if request.form:
                pass
        except:
            flash('No k value given. Assuming 5')
        try:
            if 'file' not in request.files:
                return redirect(request.url)
            file = request.files['file']
            if file.filename == '':
                return redirect(request.url)
            for fname in glob.iglob(UPLOAD_FOLDER+'/*'):
                os.remove(fname)
            file.save(os.path.join(UPLOAD_FOLDER, file.filename))
            return redirect(url_for('query_file',
                                filename=file.filename, k=int(request.form['k'])))
        except:
            return "Error, You didn't choose a file"
            redirect(request.url.split("/")[0])
    return "Error, You didn't choose a file"

if __name__ == '__main__':
    app.run(port=5000, debug=False)

```

Which of the following functions or classes contains a `CWE-601: URL Redirection to Untrusted Site ('Open Redirect')` vulnerability?

  A) predict
  B) query_file
  C) static_proxy
  D) upload_vid
Answer: D
system: You are an expert security code reviewer. You will be shown a source code file. Your task is to name the single function or class that contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the exact function or class name (no parentheses, no qualifiers, no module prefixes), wrapped in \boxed{...}. Example: `\boxed{salted_hmac}`. Output the boxed name ONLY -- no explanation, no other text.

user: ```python
import merge_similarity_inference
from flask import Flask, flash, request, jsonify, render_template, send_from_directory, redirect, url_for
import os
import glob
from werkzeug import secure_filename
app = Flask(__name__, static_folder='',template_folder='demo')

UPLOAD_FOLDER = "data/uploads/"

root = ''

@app.route('/<path:path>', methods=['GET'])
def static_proxy(path):
    return send_from_directory(root, path)

@app.route('/',methods=['GET'])
def query_file():
    vid = request.args.get('filename', None)
    k = request.args.get('k', None)
    assert int(k), "k is not an integer"
    if vid:
        if k:
            search_results = predict(int(k),"data/UCF101/"+vid)
        else:
            search_results = predict("data/UCF101/"+vid)
        print(vid,k)
        print(search_results)
        return render_template("index.html",vid_input=vid, similar_vids=search_results)
    else:
        print("Error")
        return render_template("index.html")

def predict(k=5,video_path=None):
    if not video_path:
        print("Oops, no video path.")
    prediction = merge_similarity_inference.merge_similarity_ucf_video(video_path, k=k, verbose=True ,newVid=False)
    return prediction

@app.route('/uploader',methods=['GET','POST'])
def upload_vid():
    if request.method == 'POST':
        try:
            if request.form:
                pass
        except:
            flash('No k value given. Assuming 5')
        try:
            if 'file' not in request.files:
                return redirect(request.url)
            file = request.files['file']
            if file.filename == '':
                return redirect(request.url)
            for fname in glob.iglob(UPLOAD_FOLDER+'/*'):
                os.remove(fname)
            file.save(os.path.join(UPLOAD_FOLDER, file.filename))
            return redirect(url_for('query_file',
                                filename=file.filename, k=int(request.form['k'])))
        except:
            return "Error, You didn't choose a file"
            redirect(request.url.split("/")[0])
    return "Error, You didn't choose a file"

if __name__ == '__main__':
    app.run(port=5000, debug=False)

```

Name the function or class in this code that contains a `CWE-601: URL Redirection to Untrusted Site ('Open Redirect')` vulnerability.
Answer: upload_vid
system: You are an expert security code reviewer. You will be shown a source code file. Your task is to name the single function or class that contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the exact function or class name (no parentheses, no qualifiers, no module prefixes), wrapped in \boxed{...}. Example: `\boxed{salted_hmac}`. Output the boxed name ONLY -- no explanation, no other text.

user: ```python
"""
Functions for creating an overview report of a PEtab problem
"""

from pathlib import Path
from shutil import copyfile
from typing import Union

import pandas as pd
import petab
from petab.C import *

__all__ = ['create_report']


def create_report(
        problem: petab.Problem,
        model_name: str,
        output_path: Union[str, Path] = ''
) -> None:
    """Create an HTML overview data / model overview report

    Arguments:
        problem: PEtab problem
        model_name: Name of the model, used for file name for report
        output_path: Output directory
    """

    template_dir = Path(__file__).absolute().parent / 'templates'
    output_path = Path(output_path)
    template_file = "report.html"

    data_per_observable = get_data_per_observable(problem.measurement_df)
    num_conditions = len(problem.condition_df.index)

    # Setup template engine
    import jinja2
    template_loader = jinja2.FileSystemLoader(searchpath=template_dir)
    template_env = jinja2.Environment(loader=template_loader)
    template = template_env.get_template(template_file)

    # Render and save
    output_text = template.render(problem=problem, model_name=model_name,
                                  data_per_observable=data_per_observable,
                                  num_conditions=num_conditions)
    with open(output_path / f'{model_name}.html', 'w') as html_file:
        html_file.write(output_text)
    copyfile(template_dir / 'mystyle.css', output_path / 'mystyle.css')


def get_data_per_observable(measurement_df: pd.DataFrame) -> pd.DataFrame:
    """Get table with number of data points per observable and condition

    Arguments:
        measurement_df: PEtab measurement data frame
    Returns:
        Pivot table with number of data points per observable and condition
    """

    my_measurements = measurement_df.copy()
    index = [SIMULATION_CONDITION_ID]
    if PREEQUILIBRATION_CONDITION_ID in my_measurements:
        my_measurements[PREEQUILIBRATION_CONDITION_ID].fillna('', inplace=True)
        index.append(PREEQUILIBRATION_CONDITION_ID)

    data_per_observable = pd.pivot_table(
        my_measurements, values=MEASUREMENT, aggfunc='count',
        index=index,
        columns=[OBSERVABLE_ID], fill_value=0)

    # Add row and column sums
    data_per_observable.loc['SUM', :] = data_per_observable.sum(axis=0).values
    data_per_observable['SUM'] = data_per_observable.sum(axis=1).values

    data_per_observable = data_per_observable.astype(int)

    return data_per_observable

```

Name the function or class in this code that contains a `CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')` vulnerability.
Answer: create_report
system: You are an expert security code reviewer. You will be shown a source code file along with a multi-select question listing several CWE (Common Weakness Enumeration) categories. Your task is to identify which of the listed CWEs are present in the code.

OUTPUT FORMAT: Respond with the letter(s) of all correct options, sorted alphabetically and comma-separated, wrapped in a single \boxed{...}. Examples: `\boxed{A}` for one correct, `\boxed{A,C}` for two, `\boxed{A,C,E}` for three. Output the boxed answer ONLY -- no explanation, no other text.

user: ```python
import re
import logging

from functools import partial
from typing import Match


logger = logging.getLogger(__name__)


MAX_DEPTH = 5
ALIAS_PATTERN = re.compile(r"@alias\s+(?P<original>(\w|[_])+)\s+(?P<alias>(\w|[_])+)")


def handle_import(m: Match, depth: int = 0) -> str:
    path = m.group("path")
    logger.debug("Importing: {}".format(path))
    with open(path, "r") as f:
        return precompile(f.read(), depth+1)


def precompile(raw: str, depth: int = 0) -> str:
    if depth > MAX_DEPTH:
        raise RuntimeError(
            "Maximum depth limit has been reached. "
            "Please check if you don't have cyclical imports"
        )

    raw = re.sub(
        r"@import\s+[\"'](?P<path>(\w|[/\-.])+)[\"']",
        partial(handle_import, depth=depth),
        raw
    )

    for m in ALIAS_PATTERN.finditer(raw):
        # Delete alias definition
        full = m.group(0)
        raw = raw.replace(full, "")

        original = m.group("original")
        alias = m.group("alias")
        raw = re.sub(r"(?:(\s|->|{{))(?P<alias>{})([\(])".format(alias), r"\1{}(".format(original), raw)

    return raw

```

Which of the following CWE vulnerability categories are present in this code? Multiple options may be correct.

  A) CWE-312: Cleartext Storage of Sensitive Information
  B) CWE-614: Sensitive Cookie in HTTPS Session Without 'Secure' Attribute
  C) CWE-502: Deserialization of Untrusted Data
  D) CWE-74: Improper Neutralization of Special Elements in Output Used by a Downstream Component ('Injection')
  E) CWE-1333: Inefficient Regular Expression Complexity
  F) CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')
Answer: E
system: You are an expert security code reviewer. You will be shown a source code file. Your task is to name the single function or class that contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the exact function or class name (no parentheses, no qualifiers, no module prefixes), wrapped in \boxed{...}. Example: `\boxed{salted_hmac}`. Output the boxed name ONLY -- no explanation, no other text.

user: ```python
import click

from django_configuration_management.aws_utils import pull_aws_config_data
from django_configuration_management.secrets import (
    decrypt_value,
    encrypt_value,
    generate_fernet_key,
)
from django_configuration_management.utils import gather_user_input, load_env
from django_configuration_management.yml_utils import dict_to_yml, yml_to_dict


@click.command("upsert_secret")
@click.option("-e", "--environment", default="development", help="Your environment")
def upsert_secret(environment):
    load_env(environment)

    data, _ = yml_to_dict(environment, skip_required_checks=True)
    key_name, key_value = gather_user_input()

    data[key_name] = {"value": key_value, "secret": True}

    dict_to_yml(data, environment)


@click.command("reveal_secrets")
@click.option("-e", "--environment", default="development", help="Your environment")
def reveal_secrets(environment):
    load_env(environment)

    local_secrets, aws_secrets = yml_to_dict(environment, skip_required_checks=True)

    for key, meta in local_secrets.items():
        # Skip non-secret values
        if type(meta) != dict:
            continue

        value = meta["value"]
        secret = decrypt_value(value)
        print(f"{key}={secret}")

    for key, secret in pull_aws_config_data(aws_secrets).items():
        print(f"{key}={secret}")


@click.command("generate_key")
def generate_key():
    key = generate_fernet_key()

    print(f"Your key is: \n\n{key}\n")
    print(
        "Please store this in whichever .env-[environment] file you generated it for under the variable ENC_KEY"
    )


@click.command("reencrypt")
@click.option("-e", "--environment", default="development", help="Your environment")
@click.option(
    "-k",
    "--new-key",
    help="The new key with which you'd like to re-encrypt your secrets",
)
def reencrypt(environment, new_key):
    load_env(environment)

    if not new_key:
        new_key = generate_fernet_key()

    data = yml_to_dict(environment, skip_required_checks=True)

    for key, meta in data.items():
        # Skip non-secret values
        if type(meta) != dict:
            continue

        value = meta["value"]
        decrypted_value = decrypt_value(value)
        meta["value"] = encrypt_value(decrypted_value, enc_key=new_key)

        data[key] = meta

    dict_to_yml(data, environment)

    print(f"Your new key is: \n\n{new_key}\n")
    print(
        f"config-{environment}.yaml has been re-encrypted. Please be sure to update your .env-{environment} with the new key you used!"
    )

```

Name the function or class in this code that contains a `CWE-312: Cleartext Storage of Sensitive Information` vulnerability.
Answer: reveal_secrets
system: You are an expert security code reviewer. You will be shown a source code file along with a multi-select question listing several CWE (Common Weakness Enumeration) categories. Your task is to identify which of the listed CWEs are present in the code.

OUTPUT FORMAT: Respond with the letter(s) of all correct options, sorted alphabetically and comma-separated, wrapped in a single \boxed{...}. Examples: `\boxed{A}` for one correct, `\boxed{A,C}` for two, `\boxed{A,C,E}` for three. Output the boxed answer ONLY -- no explanation, no other text.

user: ```python
import re
import html


PROXIFY_REGEX = (r'((?!https:\/\/imgp.golos)https?:\/\/(?:[\da-zA-Z]{1}'
                 '(?:[\w\-\.]+\.)+(?:[\w]{2,5}))(?:\:[\d]{1,5})?\/?(?:[^\s\/]+'
                 '\/).*?\.(?:jpe?g|gif|png)(?:\?\w+=\w+(?:\&\w+=\w+)*)?)')


LINKIFY_REGEX = (r'((?<![\"\(\/])https?:\/\/(?:[\da-zA-Z]{1}(?:[\w\-\.]+\.)+'
                 '(?:[\w]{2,5}))(?:\:[\d]{1,5})?\/?(?:[^\s\/]+\/).*?\.'
                 '(?:jpe?g|gif|png)(?:\?\w+=\w+(?:\&\w+=\w+)*)?)')


IMAGE_TEMPLATE = {
    'html': r'<img src="\1"></img>',
    'markdown': r'![](\1)',
    None: '\1'
}


def qs_ab_filter(qs, args):
    after = args.pop('after', False)
    before = args.pop('before', False)

    if after:
        cursor = qs.get(id=after)
        qs = qs.filter(__raw__={
            '_id': {'$ne': cursor.id},
            'created': {'$lte': cursor.created}
        })
    if before:
        cursor = qs.get(id=before)
        qs = qs.filter(__raw__={
            '_id': {'$ne': cursor.id},
            'created': {'$gte': cursor.created}
        })

    return qs


def linkify_images(body, format=None):
    if format == 'html':
        body = html.unescape(body)

    # Proxyfi all images
    body = re.sub(PROXIFY_REGEX, r'https://imgp.golos.io/0x0/\1', body)

    return re.sub(LINKIFY_REGEX, IMAGE_TEMPLATE[format], body)

```

Which of the following CWE vulnerability categories are present in this code? Multiple options may be correct.

  A) CWE-327: Use of a Broken or Risky Cryptographic Algorithm
  B) CWE-1004: Sensitive Cookie Without 'HttpOnly' Flag
  C) CWE-22: Improper Limitation of a Pathname to a Restricted Directory ('Path Traversal')
  D) CWE-611: Improper Restriction of XML External Entity Reference
  E) CWE-113: Improper Neutralization of CRLF Sequences in HTTP Headers ('HTTP Request/Response Splitting')
  F) CWE-1333: Inefficient Regular Expression Complexity
Answer: F
system: You are an expert security code reviewer. You will be shown a source code file along with a multi-select question listing several CWE (Common Weakness Enumeration) categories. Your task is to identify which of the listed CWEs are present in the code.

OUTPUT FORMAT: Respond with the letter(s) of all correct options, sorted alphabetically and comma-separated, wrapped in a single \boxed{...}. Examples: `\boxed{A}` for one correct, `\boxed{A,C}` for two, `\boxed{A,C,E}` for three. Output the boxed answer ONLY -- no explanation, no other text.

user: ```python
from contextlib import contextmanager
import logging
import os

from ocs_ci.framework import config
from ocs_ci.ocs import constants, exceptions


logger = logging.getLogger(__name__)


@contextmanager
def prepare_mirror_openshift_credential_files():
    """
    This function is a context manager.

    Prepare local files containing username and password for mirror.openshift.com:
        data/mirror_openshift_user,
        data/mirror_openshift_password.

    Those files are used as variable files for repo files (stored in /etc/yum/vars/
    on the target RHEL nodes or pods).

    Returns:
        (tuple): tuple containing two strings - file names for username file and password file

    Raises:
        ConfigurationError: if mirror_openshift credentials are not provided in auth.yaml file

    """
    if (
        config.AUTH.get("mirror_openshift")
        and config.AUTH["mirror_openshift"].get("user")
        and config.AUTH["mirror_openshift"].get("password")
    ):
        user_file = os.path.join(
            constants.DATA_DIR, constants.MIRROR_OPENSHIFT_USER_FILE
        )
        with open(user_file, "w") as u_file:
            u_file.writelines(config.AUTH["mirror_openshift"]["user"])

        password_file = os.path.join(
            constants.DATA_DIR, constants.MIRROR_OPENSHIFT_PASSWORD_FILE
        )
        with open(password_file, "w") as p_file:
            p_file.writelines(config.AUTH["mirror_openshift"]["password"])

        logger.debug(
            f"Credentials for mirror.openshift.com saved to files '{user_file}' and '{password_file}'"
        )
        try:
            yield user_file, password_file
        finally:
            os.remove(user_file)
            os.remove(password_file)
    else:
        raise exceptions.ConfigurationError(
            "Credentials for mirror.openshift.com are not provided in data/auth.yaml file."
        )

```

Which of the following CWE vulnerability categories are present in this code? Multiple options may be correct.

  A) CWE-117: Improper Output Neutralization for Logs
  B) CWE-94: Improper Control of Generation of Code ('Code Injection')
  C) CWE-312: Cleartext Storage of Sensitive Information
  D) CWE-611: Improper Restriction of XML External Entity Reference
  E) CWE-1333: Inefficient Regular Expression Complexity
  F) CWE-943: Improper Neutralization of Special Elements in Data Query Logic
Answer: C
system: You are an expert security code reviewer. You will be shown a source code file along with a multi-select question listing several CWE (Common Weakness Enumeration) categories. Your task is to identify which of the listed CWEs are present in the code.

OUTPUT FORMAT: Respond with the letter(s) of all correct options, sorted alphabetically and comma-separated, wrapped in a single \boxed{...}. Examples: `\boxed{A}` for one correct, `\boxed{A,C}` for two, `\boxed{A,C,E}` for three. Output the boxed answer ONLY -- no explanation, no other text.

user: ```python
import insightconnect_plugin_runtime
from .schema import ParseTapAlertInput, ParseTapAlertOutput, Input, Output

# Custom imports below
from html_table_parser import HTMLTableParser
from komand_proofpoint_tap.util.tap_formatter import TAP
from urlextract import URLExtract
from komand_proofpoint_tap.util.helpers import clean
from insightconnect_plugin_runtime.helper import convert_dict_to_camel_case


class ParseTapAlert(insightconnect_plugin_runtime.Action):
    def __init__(self):
        super(self.__class__, self).__init__(
            name="parse_tap_alert",
            description="Parses a TAP alert",
            input=ParseTapAlertInput(),
            output=ParseTapAlertOutput(),
        )

    def run(self, params={}):
        tap_alert = params.get(Input.TAPALERT)
        p = HTMLTableParser()
        p.feed(tap_alert)
        clean_data = TAP(p.tables).data

        # Get the Threat details URL which is NOT an HTML table element, but instead the <a> link of the
        #    table element
        extractor = URLExtract()
        cleaned_input_for_extractor = tap_alert.replace("\n", "")
        urls_from_input = extractor.find_urls(cleaned_input_for_extractor)
        threat_details_urls = list(
            filter(
                lambda u: r"threat/email" in u and r"threatinsight.proofpoint.com" in u[:40],
                urls_from_input,
            )
        )
        if threat_details_urls:
            clean_data["threat"]["threatDetailsUrl"] = threat_details_urls[0]
        clean_data["browser"] = clean(clean_data.get("browser", {}))
        clean_data["message"] = clean(clean_data.get("message", {}))
        clean_data["threat"] = clean(clean_data.get("threat", {}))
        return {Output.RESULTS: convert_dict_to_camel_case(clean_data)}

```

Which of the following CWE vulnerability categories are present in this code? Multiple options may be correct.

  A) CWE-312: Cleartext Storage of Sensitive Information
  B) CWE-215: Insertion of Sensitive Information Into Debugging Code
  C) CWE-502: Deserialization of Untrusted Data
  D) CWE-643: Improper Neutralization of Data within XPath Expressions ('XPath Injection')
  E) CWE-20: Improper Input Validation
  F) CWE-730: OWASP Top Ten 2004 Category A9 - Denial of Service
Answer: E
system: You are an expert security code reviewer. You will be shown a source code file along with a multiple-choice question listing several function or class names from that file. Your task is to identify which one contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the single letter of the correct option, wrapped in \boxed{...}. Example: `\boxed{B}`. Output the boxed letter ONLY -- no explanation, no other text.

user: ```python
import insightconnect_plugin_runtime
from .schema import ParseTapAlertInput, ParseTapAlertOutput, Input, Output

# Custom imports below
from html_table_parser import HTMLTableParser
from komand_proofpoint_tap.util.tap_formatter import TAP
from urlextract import URLExtract
from komand_proofpoint_tap.util.helpers import clean
from insightconnect_plugin_runtime.helper import convert_dict_to_camel_case


class ParseTapAlert(insightconnect_plugin_runtime.Action):
    def __init__(self):
        super(self.__class__, self).__init__(
            name="parse_tap_alert",
            description="Parses a TAP alert",
            input=ParseTapAlertInput(),
            output=ParseTapAlertOutput(),
        )

    def run(self, params={}):
        tap_alert = params.get(Input.TAPALERT)
        p = HTMLTableParser()
        p.feed(tap_alert)
        clean_data = TAP(p.tables).data

        # Get the Threat details URL which is NOT an HTML table element, but instead the <a> link of the
        #    table element
        extractor = URLExtract()
        cleaned_input_for_extractor = tap_alert.replace("\n", "")
        urls_from_input = extractor.find_urls(cleaned_input_for_extractor)
        threat_details_urls = list(
            filter(
                lambda u: r"threat/email" in u and r"threatinsight.proofpoint.com" in u[:40],
                urls_from_input,
            )
        )
        if threat_details_urls:
            clean_data["threat"]["threatDetailsUrl"] = threat_details_urls[0]
        clean_data["browser"] = clean(clean_data.get("browser", {}))
        clean_data["message"] = clean(clean_data.get("message", {}))
        clean_data["threat"] = clean(clean_data.get("threat", {}))
        return {Output.RESULTS: convert_dict_to_camel_case(clean_data)}

```

Which of the following functions or classes contains a `CWE-20: Improper Input Validation` vulnerability?

  A) ParseTapAlert
  B) run
  C) __init__
Answer: B
system: You are an expert security code reviewer. You will be shown a source code file. Your task is to name the single function or class that contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the exact function or class name (no parentheses, no qualifiers, no module prefixes), wrapped in \boxed{...}. Example: `\boxed{salted_hmac}`. Output the boxed name ONLY -- no explanation, no other text.

user: ```python
import insightconnect_plugin_runtime
from .schema import ParseTapAlertInput, ParseTapAlertOutput, Input, Output

# Custom imports below
from html_table_parser import HTMLTableParser
from komand_proofpoint_tap.util.tap_formatter import TAP
from urlextract import URLExtract
from komand_proofpoint_tap.util.helpers import clean
from insightconnect_plugin_runtime.helper import convert_dict_to_camel_case


class ParseTapAlert(insightconnect_plugin_runtime.Action):
    def __init__(self):
        super(self.__class__, self).__init__(
            name="parse_tap_alert",
            description="Parses a TAP alert",
            input=ParseTapAlertInput(),
            output=ParseTapAlertOutput(),
        )

    def run(self, params={}):
        tap_alert = params.get(Input.TAPALERT)
        p = HTMLTableParser()
        p.feed(tap_alert)
        clean_data = TAP(p.tables).data

        # Get the Threat details URL which is NOT an HTML table element, but instead the <a> link of the
        #    table element
        extractor = URLExtract()
        cleaned_input_for_extractor = tap_alert.replace("\n", "")
        urls_from_input = extractor.find_urls(cleaned_input_for_extractor)
        threat_details_urls = list(
            filter(
                lambda u: r"threat/email" in u and r"threatinsight.proofpoint.com" in u[:40],
                urls_from_input,
            )
        )
        if threat_details_urls:
            clean_data["threat"]["threatDetailsUrl"] = threat_details_urls[0]
        clean_data["browser"] = clean(clean_data.get("browser", {}))
        clean_data["message"] = clean(clean_data.get("message", {}))
        clean_data["threat"] = clean(clean_data.get("threat", {}))
        return {Output.RESULTS: convert_dict_to_camel_case(clean_data)}

```

Name the function or class in this code that contains a `CWE-20: Improper Input Validation` vulnerability.
Answer: run
system: You are an expert security code reviewer. You will be shown a source code file along with a multi-select question listing several CWE (Common Weakness Enumeration) categories. Your task is to identify which of the listed CWEs are present in the code.

OUTPUT FORMAT: Respond with the letter(s) of all correct options, sorted alphabetically and comma-separated, wrapped in a single \boxed{...}. Examples: `\boxed{A}` for one correct, `\boxed{A,C}` for two, `\boxed{A,C,E}` for three. Output the boxed answer ONLY -- no explanation, no other text.

user: ```python
#! /usr/bin/env python
# -*- coding: utf-8 -*-

# import sys
import os

from loguru import logger

import sys
import os.path
import tarfile
import numpy as np

path_to_script = os.path.dirname(os.path.abspath(__file__))
# sys.path.append(os.path.join(path_to_script, "./extern/sPickle"))


def get_tar_output_dir(fname):
    if fname.endswith("tar.bz2"):
        fname = fname[:-8]
        return fname


def untar(fname, path=".", output_dir_by_filename=True, force_rewrite=False):
    if output_dir_by_filename:
        path = get_tar_output_dir(fname)
    if os.path.exists(path) and force_rewrite is False:
        logger.debug("Extraction of tar file interrupted. Directory %s exists" % path)
        return path

    # extraction
    if fname.endswith("tar.bz2"):
        if path != ".":
            os.makedirs(path)
        tar = tarfile.open(fname)

        tar.extractall(path=path)
        tar.close()
        logger.debug("Extracted in " + str(path))
        return path
    else:
        logger.warning("Not a tar.bz2 file: '%s '" % path)

```

Which of the following CWE vulnerability categories are present in this code? Multiple options may be correct.

  A) CWE-601: URL Redirection to Untrusted Site ('Open Redirect')
  B) CWE-943: Improper Neutralization of Special Elements in Data Query Logic
  C) CWE-22: Improper Limitation of a Pathname to a Restricted Directory ('Path Traversal')
  D) CWE-1004: Sensitive Cookie Without 'HttpOnly' Flag
  E) CWE-611: Improper Restriction of XML External Entity Reference
  F) CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')
Answer: C
system: You are an expert security code reviewer. You will be shown a source code file along with a multiple-choice question listing several function or class names from that file. Your task is to identify which one contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the single letter of the correct option, wrapped in \boxed{...}. Example: `\boxed{B}`. Output the boxed letter ONLY -- no explanation, no other text.

user: ```python
#! /usr/bin/env python
# -*- coding: utf-8 -*-

# import sys
import os

from loguru import logger

import sys
import os.path
import tarfile
import numpy as np

path_to_script = os.path.dirname(os.path.abspath(__file__))
# sys.path.append(os.path.join(path_to_script, "./extern/sPickle"))


def get_tar_output_dir(fname):
    if fname.endswith("tar.bz2"):
        fname = fname[:-8]
        return fname


def untar(fname, path=".", output_dir_by_filename=True, force_rewrite=False):
    if output_dir_by_filename:
        path = get_tar_output_dir(fname)
    if os.path.exists(path) and force_rewrite is False:
        logger.debug("Extraction of tar file interrupted. Directory %s exists" % path)
        return path

    # extraction
    if fname.endswith("tar.bz2"):
        if path != ".":
            os.makedirs(path)
        tar = tarfile.open(fname)

        tar.extractall(path=path)
        tar.close()
        logger.debug("Extracted in " + str(path))
        return path
    else:
        logger.warning("Not a tar.bz2 file: '%s '" % path)

```

Which of the following functions or classes contains a `CWE-22: Improper Limitation of a Pathname to a Restricted Directory ('Path Traversal')` vulnerability?

  A) get_tar_output_dir
  B) untar
Answer: B
system: You are an expert security code reviewer. You will be shown a source code file. Your task is to name the single function or class that contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the exact function or class name (no parentheses, no qualifiers, no module prefixes), wrapped in \boxed{...}. Example: `\boxed{salted_hmac}`. Output the boxed name ONLY -- no explanation, no other text.

user: ```python
#! /usr/bin/env python
# -*- coding: utf-8 -*-

# import sys
import os

from loguru import logger

import sys
import os.path
import tarfile
import numpy as np

path_to_script = os.path.dirname(os.path.abspath(__file__))
# sys.path.append(os.path.join(path_to_script, "./extern/sPickle"))


def get_tar_output_dir(fname):
    if fname.endswith("tar.bz2"):
        fname = fname[:-8]
        return fname


def untar(fname, path=".", output_dir_by_filename=True, force_rewrite=False):
    if output_dir_by_filename:
        path = get_tar_output_dir(fname)
    if os.path.exists(path) and force_rewrite is False:
        logger.debug("Extraction of tar file interrupted. Directory %s exists" % path)
        return path

    # extraction
    if fname.endswith("tar.bz2"):
        if path != ".":
            os.makedirs(path)
        tar = tarfile.open(fname)

        tar.extractall(path=path)
        tar.close()
        logger.debug("Extracted in " + str(path))
        return path
    else:
        logger.warning("Not a tar.bz2 file: '%s '" % path)

```

Name the function or class in this code that contains a `CWE-22: Improper Limitation of a Pathname to a Restricted Directory ('Path Traversal')` vulnerability.
Answer: untar
system: You are an expert security code reviewer. You will be shown a source code file along with a multi-select question listing several CWE (Common Weakness Enumeration) categories. Your task is to identify which of the listed CWEs are present in the code.

OUTPUT FORMAT: Respond with the letter(s) of all correct options, sorted alphabetically and comma-separated, wrapped in a single \boxed{...}. Examples: `\boxed{A}` for one correct, `\boxed{A,C}` for two, `\boxed{A,C,E}` for three. Output the boxed answer ONLY -- no explanation, no other text.

user: ```python
from flask import Flask, jsonify, request
import os
import requests
from pprint import pprint
import json
import logging
import logstash

#added this K
#from cfenv import AppEnv

#added this K
#env = AppEnv()
#env.LOG_HOST  # 'test-app'
#env.LOG_PORT  # 5000

if 'LOG_HOST' not in os.environ or 'LOG_PORT' not in os.environ:
    raise(Exception("LOG_HOST OR LOG_PORT NOT DEFINED"))

POST_URL = "http://{host}:{port}/log".format(host=os.environ['LOG_HOST'],port=os.environ['LOG_PORT'])

host = os.environ['LOG_HOST']

test_logger = logging.getLogger('python-logstash-logger')
test_logger.setLevel(logging.INFO)
test_logger.addHandler(logstash.TCPLogstashHandler(host, 5000, version=1))

app = Flask(__name__)

def log_request(req):
    extra = {
        'ip': request.environ.get('X-Forwarded-For', request.remote_addr),
        'url': req.full_path,
    }
    test_logger.info('honeypotCF: ', extra=extra)

#data to log

@app.route('/', defaults={'path': ''})
@app.route('/<path:path>')
def honey(path):
    log_request(request)
    return jsonify({'CF result': 'ok'})


if __name__ == '__main__':
    app.run(host="0.0.0.0",port=8080)




```

Which of the following CWE vulnerability categories are present in this code? Multiple options may be correct.

  A) CWE-117: Improper Output Neutralization for Logs
  B) CWE-79: Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')
  C) CWE-776: Improper Restriction of Recursive Entity References in DTDs ('XML Entity Expansion')
  D) CWE-78: Improper Neutralization of Special Elements used in an OS Command ('OS Command Injection')
  E) CWE-502: Deserialization of Untrusted Data
  F) CWE-643: Improper Neutralization of Data within XPath Expressions ('XPath Injection')
Answer: A
system: You are an expert security code reviewer. You will be shown a source code file along with a multi-select question listing several CWE (Common Weakness Enumeration) categories. Your task is to identify which of the listed CWEs are present in the code.

OUTPUT FORMAT: Respond with the letter(s) of all correct options, sorted alphabetically and comma-separated, wrapped in a single \boxed{...}. Examples: `\boxed{A}` for one correct, `\boxed{A,C}` for two, `\boxed{A,C,E}` for three. Output the boxed answer ONLY -- no explanation, no other text.

user: ```python
import requests, json, sys
from pddl_parser_2.pond.parser import Problem
from pddl_parser_2.pond.predicate import Predicate
from pddl_parser_2.pond.formula import Formula, And, Primitive, Forall, When, Xor, Not, Oneof, Or

def doit2(domain, problem):
    try:
        prob = Problem(domain, problem)
    except Exception:
        return (json.dumps({"parse_status": "err", "error": "Failed to parse the problem -- %s\n\n" % (str(Exception))}))
    new_pred = Predicate("newpred", [])  
    primitive = Primitive(new_pred)
    prob.goal = primitive
    prob.predicates.append(new_pred)
    new_eff = And([primitive])
    tmpindex = 0
    result_dict = {}

    for act in prob.actions:
        tmpindex += 1
        old_eff = act.effect
        act.effect = new_eff
        try:
            result_solver = callSolver(prob, tmpindex)
            result_dict[act.name] = result_solver
        except Exception:
            return (json.dumps({"parse_status": "err", "error": "The action is not usable in this step-- %s\n\n%s" % (str(Exception), act.name)}))
        act.effect = old_eff
    
    return (json.dumps({"output": result_dict}))


def callSolver(prob, tmpindex):
    prob.export("compiled_domain.pddl", "compiled_problem.pddl")

    # check whether the action effect changes to its original value by listing all domains and problems
    data = {'domain': open("compiled_domain.pddl", 'r').read(),
            'problem': open("compiled_problem.pddl", 'r').read()}

    r = requests.post('http://solver.planning.domains/solve', verify=False, json=data)
    resp = r.json()
    # all results are error, something wrong
    
    return resp['status']


if __name__ == '__main__':
    try:
        domain = sys.argv[1]
        problem = sys.argv[2]
        plan0 = sys.argv[3]
        resultJson = doit2(domain, problem)
        print(resultJson)

    except Exception:
        print({"parse_status": "err", "error": "wrapper main error -- %s\n\n" % (str(Exception))})

```

Which of the following CWE vulnerability categories are present in this code? Multiple options may be correct.

  A) CWE-215: Insertion of Sensitive Information Into Debugging Code
  B) CWE-117: Improper Output Neutralization for Logs
  C) CWE-601: URL Redirection to Untrusted Site ('Open Redirect')
  D) CWE-326: Inadequate Encryption Strength
  E) CWE-78: Improper Neutralization of Special Elements used in an OS Command ('OS Command Injection')
  F) CWE-295: Improper Certificate Validation
Answer: F
system: You are an expert security code reviewer. You will be shown a source code file along with a multiple-choice question listing several function or class names from that file. Your task is to identify which one contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the single letter of the correct option, wrapped in \boxed{...}. Example: `\boxed{B}`. Output the boxed letter ONLY -- no explanation, no other text.

user: ```python
import requests, json, sys
from pddl_parser_2.pond.parser import Problem
from pddl_parser_2.pond.predicate import Predicate
from pddl_parser_2.pond.formula import Formula, And, Primitive, Forall, When, Xor, Not, Oneof, Or

def doit2(domain, problem):
    try:
        prob = Problem(domain, problem)
    except Exception:
        return (json.dumps({"parse_status": "err", "error": "Failed to parse the problem -- %s\n\n" % (str(Exception))}))
    new_pred = Predicate("newpred", [])  
    primitive = Primitive(new_pred)
    prob.goal = primitive
    prob.predicates.append(new_pred)
    new_eff = And([primitive])
    tmpindex = 0
    result_dict = {}

    for act in prob.actions:
        tmpindex += 1
        old_eff = act.effect
        act.effect = new_eff
        try:
            result_solver = callSolver(prob, tmpindex)
            result_dict[act.name] = result_solver
        except Exception:
            return (json.dumps({"parse_status": "err", "error": "The action is not usable in this step-- %s\n\n%s" % (str(Exception), act.name)}))
        act.effect = old_eff
    
    return (json.dumps({"output": result_dict}))


def callSolver(prob, tmpindex):
    prob.export("compiled_domain.pddl", "compiled_problem.pddl")

    # check whether the action effect changes to its original value by listing all domains and problems
    data = {'domain': open("compiled_domain.pddl", 'r').read(),
            'problem': open("compiled_problem.pddl", 'r').read()}

    r = requests.post('http://solver.planning.domains/solve', verify=False, json=data)
    resp = r.json()
    # all results are error, something wrong
    
    return resp['status']


if __name__ == '__main__':
    try:
        domain = sys.argv[1]
        problem = sys.argv[2]
        plan0 = sys.argv[3]
        resultJson = doit2(domain, problem)
        print(resultJson)

    except Exception:
        print({"parse_status": "err", "error": "wrapper main error -- %s\n\n" % (str(Exception))})

```

Which of the following functions or classes contains a `CWE-295: Improper Certificate Validation` vulnerability?

  A) callSolver
  B) doit2
Answer: A
system: You are an expert security code reviewer. You will be shown a source code file. Your task is to name the single function or class that contains the specified CWE vulnerability.

OUTPUT FORMAT: Respond with the exact function or class name (no parentheses, no qualifiers, no module prefixes), wrapped in \boxed{...}. Example: `\boxed{salted_hmac}`. Output the boxed name ONLY -- no explanation, no other text.

user: ```python
import requests, json, sys
from pddl_parser_2.pond.parser import Problem
from pddl_parser_2.pond.predicate import Predicate
from pddl_parser_2.pond.formula import Formula, And, Primitive, Forall, When, Xor, Not, Oneof, Or

def doit2(domain, problem):
    try:
        prob = Problem(domain, problem)
    except Exception:
        return (json.dumps({"parse_status": "err", "error": "Failed to parse the problem -- %s\n\n" % (str(Exception))}))
    new_pred = Predicate("newpred", [])  
    primitive = Primitive(new_pred)
    prob.goal = primitive
    prob.predicates.append(new_pred)
    new_eff = And([primitive])
    tmpindex = 0
    result_dict = {}

    for act in prob.actions:
        tmpindex += 1
        old_eff = act.effect
        act.effect = new_eff
        try:
            result_solver = callSolver(prob, tmpindex)
            result_dict[act.name] = result_solver
        except Exception:
            return (json.dumps({"parse_status": "err", "error": "The action is not usable in this step-- %s\n\n%s" % (str(Exception), act.name)}))
        act.effect = old_eff
    
    return (json.dumps({"output": result_dict}))


def callSolver(prob, tmpindex):
    prob.export("compiled_domain.pddl", "compiled_problem.pddl")

    # check whether the action effect changes to its original value by listing all domains and problems
    data = {'domain': open("compiled_domain.pddl", 'r').read(),
            'problem': open("compiled_problem.pddl", 'r').read()}

    r = requests.post('http://solver.planning.domains/solve', verify=False, json=data)
    resp = r.json()
    # all results are error, something wrong
    
    return resp['status']


if __name__ == '__main__':
    try:
        domain = sys.argv[1]
        problem = sys.argv[2]
        plan0 = sys.argv[3]
        resultJson = doit2(domain, problem)
        print(resultJson)

    except Exception:
        print({"parse_status": "err", "error": "wrapper main error -- %s\n\n" % (str(Exception))})

```

Name the function or class in this code that contains a `CWE-295: Improper Certificate Validation` vulnerability.
Answer: callSolver