NothingMuch/GO-Terms huggingface dataset:
The chemical reactions and pathways resulting in the breakdown of D-allose, the D-enantiomer of allo-hexose, an aldohexose similar to glucose.
D-allose breakdown
D-allose catabolism
D-allose degradation
The chemical reactions and pathways involving L-lyxose, the L-enantiomer of aldopentose lyxo-pentose, the C-2 epimer of xylose.
L-lyxose metabolism
The chemical reactions and pathways resulting in the breakdown of fructose that occurs in the absence of oxygen.
anaerobic fructose breakdown
anaerobic fructose catabolism
anaerobic fructose degradation
The chemical reactions and pathways resulting in the conversion of lead sulfide to lead sulfate.
lead sulphide oxidation
oxidation of galena
oxidation of lead sulfide
The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, in the absence of oxygen.
anaerobic gallate breakdown
anaerobic gallate catabolism
anaerobic gallate degradation
anaerobic gallic acid catabolic process
anaerobic gallic acid catabolism
gallate fermentation
The oxidation of ammonium (NH4) to nitrogen (N2) in the absence of oxygen, using nitrite (NO2) as the electron acceptor. It is suggested that hydroxylamine and ammonium are combined to yield hydrazine, which is subsequently oxidized to N2.
anaerobic ammonium oxidation
anammox
The oxidation of nitrite (NO2) to nitrate (NO3), using oxygen (O2) as the electron acceptor. Nitrite oxidation is the final step in nitrification, the oxidation of ammonia to nitrate, and nitrite oxidoreductase (NOR) is the key enzyme complex that catalyzes the conversion of nitrite to nitrate in nitrite oxidizing species.
nitrite oxidation
The chemical reactions and pathways resulting in the breakdown of p-cymene, 1-methyl-4-isopropylbenzene, one of the alkyl-substituted aromatic hydrocarbons found in volatile oils from over 100 plants.
p-cymene breakdown
p-cymene catabolism
p-cymene degradation
The chemical reactions and pathways resulting in the breakdown of 3-methylquinoline, C10H9N, an aromatic compound composed of a benzene ring and a heterocyclic N-containing ring.
3-methylquinoline breakdown
3-methylquinoline catabolism
3-methylquinoline degradation
The chemical reactions and pathways resulting in the breakdown of tetrachloroethylene, a derivative of ethene with the hydrogen atoms replaced by chlorines.
tetrachloroethene catabolic process
tetrachloroethene catabolism
tetrachloroethylene breakdown
tetrachloroethylene catabolism
tetrachloroethylene degradation
The chemical reactions and pathways resulting in the breakdown of pentachlorophenol, a chlorinated insecticide and fungicide used primarily to protect timber from fungal rot and wood boring insects. Pentachlorophenol is significantly toxic to mammals, plants, and many microorganisms.
pentachlorophenol breakdown
pentachlorophenol catabolism
pentachlorophenol degradation
The chemical reactions and pathways resulting in the breakdown of parathion, a highly toxic organophosphate compound. Degradation of parathion by sunlight or liver enzymes can result in the formation of the active compound paraoxon which interferes with the nervous system through cholinesterase inhibition.
parathion breakdown
parathion catabolism
parathion degradation
The chemical reactions and pathways resulting in the breakdown of dibenzofuran, a substance composed of two benzene rings linked by one ether bond and one carbon-carbon bond.
dibenzofuran breakdown
dibenzofuran catabolism
dibenzofuran degradation
The chemical reactions and pathways resulting in the breakdown of dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds.
dibenzo-p-dioxin breakdown
dibenzo-p-dioxin catabolism
dibenzo-p-dioxin degradation
The chemical reactions and pathways resulting in the formation of cysteine, via the intermediate cystathionine.
cysteine anabolism via cystathionine
cysteine formation via cystathionine
cysteine synthesis via cystathionine
The chemical reactions and pathways resulting in the formation of cysteine, via the intermediate S-sulfo-L-cysteine.
cysteine anabolism via S-sulfo-L-cysteine
cysteine biosynthesis via S-sulpho-L-cysteine
cysteine biosynthetic process via S-sulpho-L-cysteine
cysteine formation via S-sulfo-L-cysteine
cysteine synthesis via S-sulfo-L-cysteine
The interconversion of homocysteine and cysteine via cystathionine. In contrast with enteric bacteria and mammals, Saccharomyces cerevisiae has two transsulfuration pathways employing two separate sets of enzymes.
homocysteine-cysteine interconversion
transsulphuration
The chemical reactions and pathways resulting in the formation of GDP-alpha-D-mannosylchitobiosyldiphosphodolichol, a substance composed of mannosylchitobiosyldiphosphodolichol in glycosidic linkage with guanosine diphosphate.
GDP-alpha-D-mannosylchitobiosyldiphosphodolichol anabolism
GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthesis
GDP-alpha-D-mannosylchitobiosyldiphosphodolichol formation
GDP-alpha-D-mannosylchitobiosyldiphosphodolichol synthesis
The chemical reactions and pathways resulting in the formation of dethiobiotin, a derivative of biotin in which the sulfur atom has been replaced by two hydrogen atoms.
desthiobiotin biosynthesis
desthiobiotin biosynthetic process
dethiobiotin anabolism
dethiobiotin biosynthesis
dethiobiotin formation
dethiobiotin synthesis
The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glycine.
protoporphyrinogen IX anabolism from glycine
protoporphyrinogen IX formation from glycine
protoporphyrinogen IX synthesis from glycine
The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate.
protoporphyrinogen IX anabolism from glutamate
protoporphyrinogen IX formation from glutamate
protoporphyrinogen IX synthesis from glutamate
The chemical reactions and pathways resulting in the formation of siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings.
sirohaem biosynthesis
sirohaem biosynthetic process
siroheme anabolism
siroheme biosynthesis
siroheme formation
siroheme synthase activity
siroheme synthesis
The chemical reactions and pathways resulting in the formation of nicotinate nucleotide from other compounds, including tryptophan.
nicotinate nucleotide anabolism from tryptophan
nicotinate nucleotide formation from tryptophan
nicotinate nucleotide synthesis from tryptophan
The generation of nicotinate nucleotide without de novo synthesis.
nicotinate nucleotide biosynthesis, salvage pathway
nicotinate nucleotide biosynthetic process, salvage pathway
The chemical reactions and pathways resulting in the formation of nicotinamide nucleotide from other compounds, including niacinamide.
nicotinamide nucleotide anabolism from niacinamide
nicotinamide nucleotide formation from niacinamide
nicotinamide nucleotide synthesis from niacinamide
The chemical reactions and pathways resulting in the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA, a derivative of coenzyme A.
2\'-(5\'\'-triphosphoribosyl)-3\'-dephospho-CoA anabolism
2\'-(5\'\'-triphosphoribosyl)-3\'-dephospho-CoA biosynthesis
2\'-(5\'\'-triphosphoribosyl)-3\'-dephospho-CoA formation
2\'-(5\'\'-triphosphoribosyl)-3\'-dephospho-CoA synthesis
The pathway by which inorganic sulfate is processed and incorporated into sulfated compounds, where the phosphoadenylyl sulfate reduction step is catalyzed by the enzyme phosphoadenylyl-sulfate reductase (thioredoxin) (EC:1.8.4.8).
sulphate assimilation, phosphoadenylyl sulphate reduction by a phosphoadenylyl-sulphate reductase (thioredoxin)
The chemical reactions and pathways resulting in the breakdown of 3-phenylpropionate, the anion of phenylpropanoic acid.
3-phenylpropionate breakdown
3-phenylpropionate catabolism
3-phenylpropionate degradation
The chemical reactions and pathways resulting in the breakdown of carbon tetrachloride, a toxic, carcinogenic compound which is used as a general solvent in industrial degreasing operations. It is also used as grain fumigant and a chemical intermediate in the production of refrigerants.
carbon tetrachloride breakdown
carbon tetrachloride catabolism
carbon tetrachloride degradation
The chemical reactions and pathways resulting in the breakdown of (+)-camphor, a bicyclic monoterpene ketone.
(+)-camphor breakdown
(+)-camphor catabolism
(+)-camphor degradation
The chemical reactions and pathways resulting in the breakdown of caprolactam, hexahydro-2h-azepin-2-one, a cyclic amide of caproic acid.
caprolactam breakdown
caprolactam catabolism
caprolactam degradation
The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including acetate.
methane biosynthesis from acetate
methane biosynthetic process from acetate
The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other compounds, including carbon dioxide (CO2).
methane biosynthesis from carbon dioxide
methane biosynthetic process from carbon dioxide
The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, via the intermediate 2-pyrone-4,6-dicarboxylate.
gallate breakdown via 2-pyrone-4,6-dicarboxylate
gallate degradation via 2-pyrone-4,6-dicarboxylate
gallic acid catabolic process via 2-pyrone-4,6-dicarboxylate
gallic acid catabolism via 2-pyrone-4,6-dicarboxylate
The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, where the first step is the conversion of gallate to (1E)-4-oxobut-1-ene-1,2,4-tricarboxylate catalyzed by gallate dioxygenase.
gallate breakdown via 4-carboxy-2-hydroxhexa-2,3-dienedioate
gallate catabolic process via 4-carboxy-2-hydroxhexa-2,3-dienedioate
gallate degradation via 4-carboxy-2-hydroxhexa-2,3-dienedioate
gallic acid catabolic process via 4-carboxy-2-hydroxhexa-2,3-dienedioate
gallic acid catabolism via 4-carboxy-2-hydroxhexa-2,3-dienedioate
The chemical reactions and pathways resulting in the formation of galactitol, the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose.
galactitol anabolism
galactitol biosynthesis
galactitol formation
galactitol synthesis
The chemical reactions and pathways resulting in the breakdown of galactitol, the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose.
galactitol breakdown
galactitol catabolism
galactitol degradation
The metabolic process in which ammonia (NH3) is oxidized to nitrite (NO2) in the presence of oxygen; enzymatic reactions convert ammonia to hydrazine, and hydrazine to nitrite.
aerobic ammonia oxidation to nitrite via hydrazine
The oxidation of hydrogen (H2) to water (H2O), using oxygen (O2) as the electron acceptor. A hydrogenase enzyme binds H2 and the hydrogen atoms are passed through an electron transfer chain to O2 to form water.
hydrogen oxidation
An aerobic respiration process in which a sulfur-containing molecule (hydrogen sulfide, sulfur, sulfite, thiosulfate, and various polythionates) is oxidized.
aerobic respiration, using sulphur or sulphate as electron donor
The chemical reactions and pathways resulting in the formation of acetate from other compounds, including carbon monoxide.
acetate anabolism from carbon monoxide
acetate formation from carbon monoxide
acetate synthesis from carbon monoxide
carbon monoxide dehydrogenase pathway
The reduction of sulfate to hydrogen sulfide, which acts as a terminal electron acceptor. Sulfate is activated to adenosine-phosphosulfate (APS) which is then reduced to sulfite, which is in turn reduced to hydrogen sulfide.
dissimilatory sulphate reduction
The process in which sulfur compounds with an intermediate oxidation state serve as both electron donors and electron acceptors in an energy-generating redox process. The reaction takes place anaerobically, in light and in the absence of CO2.
disproportionation of elemental sulphur
A sulfur oxidation process that proceeds via the reaction catalyzed by sulfur:ferric ion oxidoreductase, and requires the presence of ferric ion (Fe3+).
sulphur oxidation, ferric ion-dependent
The chemical reactions and pathways resulting in the formation of acetyl-CoA from acetate, either directly or via acetylphosphate.
acetate utilization
acetyl-CoA anabolism from acetate
acetyl-CoA formation from acetate
acetyl-CoA synthesis from acetate
The chemical reactions and pathways resulting in the formation of allantoin, (2,5-dioxo-4-imidazolidinyl)urea.
allantoin anabolism
allantoin biosynthesis
allantoin formation
allantoin synthesis
The chemical reactions and pathways resulting in the breakdown of fluorene, a tricyclic polycyclic aromatic hydrocarbon containing a five-membered ring. It is a major component of fossil fuels and their derivatives and is also a by-product of coal-conversion and energy-related industries. It is commonly found in vehicle exhaust emissions, crude oils, motor oils, coal and oil combustion products, waste incineration, and industrial effluents.
fluorene breakdown
fluorene catabolism
fluorene degradation
fluorene metabolic process
fluorene metabolism
The chemical reactions and pathways resulting in the formation of acetyl-CoA from ethanol via acetaldehyde.
acetyl-CoA anabolism from ethanol
acetyl-CoA formation from ethanol
acetyl-CoA synthesis from ethanol
The chemical reactions and pathways resulting in the formation of sophorosyloxydocosanoate, 13-sophorosyloxydocosanoate 6',6''-diacetate.
sophorosyloxydocosanoate anabolism
sophorosyloxydocosanoate biosynthesis
sophorosyloxydocosanoate formation
sophorosyloxydocosanoate synthesis
The chemical reactions and pathways resulting in the breakdown of sophorosyloxydocosanoate, 13-sophorosyloxydocosanoate 6',6''-diacetate.
sophorosyloxydocosanoate breakdown
sophorosyloxydocosanoate catabolism
sophorosyloxydocosanoate degradation
The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including indole-3-acetate.
tryptophan breakdown to indole-3-acetate
tryptophan catabolic process to IAA
tryptophan catabolic process to indoleacetic acid
tryptophan catabolism to indoleacetic acid
tryptophan degradation to indole-3-acetate
The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine.
tryptophan breakdown to kynurenine
tryptophan degradation to kynurenine
The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including acetyl-CoA.
tryptophan breakdown to acetyl-CoA
tryptophan degradation to acetyl-CoA
The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including catechol.
tryptophan breakdown to catechol
tryptophan degradation to catechol
The chemical reactions and pathways resulting in the breakdown of tyrosine into other compounds, including fumarate.
tyrosine breakdown to fumarate
tyrosine degradation to fumarate
The chemical reactions and pathways resulting in the breakdown of D-cysteine, (S)-2-amino-3-mercaptopropanoic acid, which occurs naturally in firefly luciferin.
D-cysteine breakdown
D-cysteine catabolism
D-cysteine degradation
The chemical reactions and pathways resulting in the breakdown of L-cysteine into other compounds, including hypotaurine.
L-cysteine breakdown to hypotaurine
L-cysteine degradation to hypotaurine
The chemical reactions and pathways resulting in the breakdown into pyruvate of L-cystine, catalyzed by the enzyme cysteine dioxygenase (EC:1.13.11.20).
L-cysteine breakdown to pyruvate, using cysteine dioxygenase
L-cysteine degradation to pyruvate, using cysteine dioxygenase
The chemical reactions and pathways resulting in the breakdown of L-cysteine into other compounds, including taurine.
L-cysteine breakdown to taurine
L-cysteine degradation to taurine
The chemical reactions and pathways resulting in the breakdown, via the compound cystine, of L-cysteine, catalyzed by the enzyme glutathione-cystine transhydrogenase.
L-cysteine breakdown via cystine, using glutathione-cystine transhydrogenase
L-cysteine degradation via cystine, using glutathione-cystine transhydrogenase
The chemical reactions and pathways resulting in the breakdown, via the compound cystine, of L-cysteine, catalyzed by the enzyme cystine reductase.
L-cysteine breakdown via cystine, using cystine reductase
L-cysteine degradation via cystine, using cystine reductase
The chemical reactions and pathways resulting in the breakdown, via the compound cystine, of L-cysteine, catalyzed by the enzyme cysteine transaminase.
L-cysteine breakdown via cystine, using cysteine transaminase
L-cysteine degradation via cystine, using cysteine transaminase
The chemical reactions and pathways resulting in the breakdown of methionine into other compounds, including succinyl-CoA.
methionine breakdown to succinyl-CoA
methionine degradation to succinyl-CoA
The chemical reactions and pathways resulting in the breakdown of methionine, via the intermediate 2-oxobutanoate.
methionine breakdown via 2-oxobutanoate
methionine degradation via 2-oxobutanoate
The chemical reactions and pathways resulting in the breakdown of glycine into other compounds, including creatine.
glycine breakdown to creatine
glycine degradation to creatine
The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex.
glycine cleavage system
The chemical reactions and pathways resulting in the breakdown of ornithine, via the intermediate proline.
ornithine breakdown via proline
ornithine degradation via proline
The chemical reactions and pathways resulting in the breakdown of ornithine by decarboxylation.
ornithine breakdown, by decarboxylation
ornithine degradation, by decarboxylation
The chemical reactions and pathways resulting in the breakdown of 4-hydroxyproline, C5H9NO3, a derivative of the amino acid proline.
4-hydroxyproline breakdown
4-hydroxyproline catabolism
4-hydroxyproline degradation
The chemical reactions and pathways resulting in the formation of 4-hydroxyproline, C5H9NO3, a derivative of the amino acid proline.
4-hydroxyproline anabolism
4-hydroxyproline biosynthesis
4-hydroxyproline formation
4-hydroxyproline synthesis
The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including glutarate, by acetylation.
L-lysine breakdown to glutarate, by acetylation
L-lysine degradation to glutarate, by acetylation
The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetate.
L-lysine breakdown to acetate
L-lysine degradation to acetate
lysine fermentation
The chemical reactions and pathways resulting in the breakdown of D-lysine, the D-enantiomer of lysine; i.e. (2R)-2,6-diaminohexanoic acid.
D-lysine breakdown
D-lysine catabolism
D-lysine degradation
The chemical reactions and pathways resulting in the breakdown of L-alanine by transamination.
L-alanine breakdown, by transamination
L-alanine degradation, by transamination
The chemical reactions and pathways resulting in the breakdown of beta-alanine into other compounds, including L-alanine.
beta-alanine breakdown to L-alanine
beta-alanine degradation to L-alanine
The chemical reactions and pathways resulting in the breakdown of beta-alanine into other compounds, including mevalonate semialdehyde, by transamination.
beta-alanine breakdown to mevalonate semialdehyde, by transamination
beta-alanine degradation to mevalonate semialdehyde, by transamination
The chemical reactions and pathways involving acetylene, a colorless, volatile, explosive gas, that occur in the absence of oxygen.
anaerobic acetylene breakdown
anaerobic acetylene catabolism
anaerobic acetylene degradation
anaerobic ethyne catabolic process
anaerobic ethyne catabolism
The chemical reactions and pathways resulting in the breakdown of ribitol to form xylulose 5-phosphate. Ribitol is initially converted to D-ribulose, which is phosphorylated to form ribulose 5-phosphate, which is then converted into xylulose 5-phosphate.
ribitol breakdown to xylulose 5-phosphate
ribitol degradation to xylulose 5-phosphate
ribitol utilization
The removal of the sulfonate group from 2-aminobenzenesulfonate, an aromatic sulfonate used in organic synthesis and in the manufacture of various dyes and medicines.
2-aminobenzenesulphonate desulphonation
The chemical reactions and pathways resulting in the formation of ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid), a tetrahydropyrimidine commonly synthesized by halophilic bacteria.
ectoine anabolism
ectoine biosynthesis
ectoine formation
ectoine synthesis
Any process which produces the amino acid proline from derivatives of it, without de novo synthesis.
proline cycling
The chemical reactions and pathways resulting in the breakdown of proline into other compounds, including 2-oxoglutarate.
proline breakdown to 2-oxoglutarate
proline catabolic process to 2-ketoglutarate
proline catabolic process to alpha-ketoglutarate
proline catabolic process to alpha-oxoglutarate
proline catabolism to 2-ketoglutarate
proline catabolism to alpha-ketoglutarate
proline catabolism to alpha-oxoglutarate
proline degradation to 2-oxoglutarate
The chemical reactions and pathways resulting in the breakdown of cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration.
cyanide breakdown
cyanide catabolism
cyanide degradation
The chemical reactions and pathways resulting in the breakdown of arsonoacetate, a synthetic, organic compound containing a single arsenic atom.
arsonoacetate breakdown
arsonoacetate catabolism
arsonoacetate degradation
The chemical reactions and pathways resulting in the formation of stachydrine, N-methylproline methylbetaine, the betaine derivative of L-proline.
stachydrine anabolism
stachydrine biosynthesis
stachydrine biosynthetic process
stachydrine formation
stachydrine synthesis
The chemical reactions and pathways resulting in the breakdown of stachydrine, N-methylproline methylbetaine, the betaine derivative of L-proline.
stachydrine breakdown
stachydrine catabolic process
stachydrine catabolism
stachydrine degradation
The chemical reactions and pathways involving resorcinol (C6H4(OH)2), a benzene derivative with many applications, including dyes, explosives, resins and as an antiseptic.
1,3-benzenediol metabolic process
1,3-benzenediol metabolism
1,3-dihydroxybenzene metabolic process
1,3-dihydroxybenzene metabolism
resorcinol metabolism
The chemical reactions and pathways resulting in the breakdown of phenylmercury acetate, an organomercurial compound composed of a mercury atom attached to a benzene ring and an acetate group.
phenylmercury acetate breakdown
phenylmercury acetate catabolism
phenylmercury acetate degradation
The chemical reactions and pathways resulting in the breakdown of 2,5-dihydroxypyridine to form fumarate. 2,5-dihydroxypyridine is dioxygenated to give maleamate and formate; the maleamate from this reaction is then converted to maleate, which is then isomerized to fumurate.
2,5-dihydroxypyridine breakdown to fumarate
2,5-dihydroxypyridine degradation to fumarate
2,5-dihydroxypyridine utilization
maleamate pathway
pyridine-2,5-diol catabolic process to fumarate
The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine.
methionine recycling
methionine regeneration
methionine salvage from methylthioadenosine
methionine salvage pathway
The chemical reactions and pathways resulting in the breakdown of S-adenosylhomocysteine, forming homocysteine and then methionine.
S-adenosylhomocysteine breakdown
S-adenosylhomocysteine catabolism
S-adenosylhomocysteine degradation
The chemical reactions and pathways resulting in the breakdown of lactose, via the intermediate tagatose-6-phosphate.
lactose breakdown via tagatose-6-phosphate
lactose degradation via tagatose-6-phosphate
The chemical reactions and pathways resulting in the breakdown of lactose, catalyzed by the enzyme glucoside 3-dehydrogenase.
lactose breakdown, using glucoside 3-dehydrogenase
lactose degradation, using glucoside 3-dehydrogenase