NothingMuch/GO-Terms huggingface dataset:
The chemical reactions and pathways resulting in the formation of progoitrin, a 2-hydroxy-but-3-enyl glucosinolate. Glucosinolates are substituted thioglucosides found in rapeseed products and related cruciferae, and progoitrin has been implicated in causing goiters in mammals and bitter taste in cruciferous vegetables.
2-hydroxy-but-3-enyl glucosinolate anabolism
2-hydroxy-but-3-enyl glucosinolate biosynthesis
2-hydroxy-but-3-enyl glucosinolate formation
2-hydroxy-but-3-enyl glucosinolate synthesis
progoitrin biosynthesis
progoitrin biosynthetic process
progoitrin synthesis
Any process that stops, prevents, or reduces the frequency, rate or extent of cytokinin signaling.
negative regulation of cytokinin mediated signaling pathway
negative regulation of cytokinin mediated signalling
Any process that activates or increases the frequency, rate or extent of cytokinin signaling.
positive regulation of cytokinin mediated signaling pathway
positive regulation of cytokinin mediated signalling
Catalysis of the reaction: GDP-beta-L-galactose + phosphate = beta-L-galactose-1-phosphate + GDP.
galactose-1-phosphate guanylyltransferase (GDP) activity
GDP:galactose-1-phosphate guanyltransferase activity
Catalysis of the reaction: GDP-alpha-D-glucose + phosphate = alpha-D-glucose-1-phosphate + GDP.
GDP:glucose-1-phosphate guanyltransferase activity
glucose-1-phosphate guanylyltransferase (GDP) activity
Enables the transfer of nitrate ions (NO3-) from one side of a membrane to the other. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations.
low affinity nitrate transmembrane transporter activity
The protein modification process in which a glutathione molecule is removed from a protein amino acid by breaking a disulfide linkage.
protein amino acid deglutathionylation
A lipid oxidation process proceeding through a series of three successive monooxygenations of the alpha methyl group on the C4 carbon (CH3 to CH2OH to CHO to COOH) and resulting in this overall reaction: 4,4-dimethyl-9beta,19-cyclopropylsterol + 3 NADPH + 3 H+ + 3 O2 = 4-alpha-carboxy, 4-beta-methyl-9beta,19-cyclopropylsterol + 3 NADP+ + 3 H2O.
4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity
A lipid oxidation process proceeding through a series of three successive monooxygenations of the alpha methyl group on the C4 carbon (CH3 to CH2OH to CHO to COOH) and resulting in this overall reaction: 4-alpha-methyl-delta7-sterol + 3 NADPH + 3 H+ + 3 O2 = 4-alpha-carboxy,delta7-sterol + 3 NADP+ + 3 H2O.
4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity
Catalysis of the reaction: D-cellobiose + H2O = 2 D-glucose.
cellobiose glucohydrolase activity
D-cellobiose glucosidase activity
The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen.
filament development
Catalysis of the reaction: L-tyrosine + pyruvate = (4-hydroxyphenyl)pyruvate + L-alanine.
L-tyrosine aminotransferase activity
L-tyrosine:pyruvate aminotransferase activity
Catalysis of the reaction: L-methionine + 2-oxoglutarate = 4-methylthio-2-oxobutyrate + L-glutamate.
L-methionine:alpha-ketoglutarate aminotransferase activity
Catalysis of the conversion of a S-alkylthiohydroximate to a thiohydroximate.
S-alkylthiohydroximate C-S lyase activity
The chemical reactions and pathways resulting in the formation of sporopollenin, a primary constituent of the pollen exine layer.
sporopollenin biosynthesis
Any process that modulates the frequency, rate or extent of growth of the seed of an plant.
regulation of seed size
A process that is carried out at the cellular level which results in the formation of ER (endoplasmic reticulum) body. ER body is a compartment found in plant cells that is derived from the ER. The structures have a characteristic shape and size (10 mm long and 0.5 mm wide) and are surrounded with ribosomes. They have been found in Arabidopsis thaliana and related Brassicaceae species.
endoplasmic reticulum body organization
endoplasmic reticulum body organization and biogenesis
ER body organisation
ER body organization and biogenesis
The directed movement of AMP, adenosine monophosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
adenosine monophosphate transport
Enables the transfer of AMP, adenosine monophosphate, from one side of a membrane to the other.
adenosine monophosphate transmembrane transporter activity
Catalysis of the reaction: a jasmonate + an L-alpha-amino acid + ATP = a jasmonyl-L-amino acid + AMP + diphosphate + H+. In Arabidopsis, isoleucine is the principal amino acid that conjugates with JA to form JA (JA-Ile). Other amino acid can be conjugated with JA such as valine, leucine, and phenylalanine.
ja-amino synthetase activity
jasmonate-amido synthetase activity
jasmonate-amino acid conjugate synthetase activity
jasmonate-amino acid synthetase activity
jasmonate-amino synthetase activity
jasmonate:amino acid synthetase activity
jasmonic acid-amino synthetase activity
jasmonyl-amino synthetase activity
Catalysis of the reaction: pheophytin + H2O = phytol + pheophorbide.
pheophytin pheophorbide hydrolase activity
Catalysis of the reaction: L-phenylalanine + 2-oxoglutarate = 3-phenylpyruvate + L-glutamate.
L-phenylalanine:2-oxoglutarate aminotransferase activity
L-phenylalanine:alpha-ketoglutarate aminotransferase activity
Catalysis of the reaction: a hydroxyjasmonate + 3'-phosphoadenosine-5'-phosphosulfate = a hydroxyjasmonate sulfate + adenosine-3',5'-diphosphate.
11-hydroxyjasmonate sulfotransferase activity
11-hydroxyjasmonic acid sulfotransferase activity
11-OHJA sulfotransferase activity
12-hydroxyjasmonate sulfotransferase activity
12-hydroxyjasmonic acid sulfotransferase activity
12-OHJA sulfotransferase activity
hydroxyjasmonic acid sulfotransferase activity
OHJA sulfotransferase activity
The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress.
priming of response to stress
priming of stress response
Enables the transfer of borate from the inside of the cell to the outside of the cell across a membrane.
boron efflux transmembrane transporter activity
A homeostatic process involved in the maintenance of a steady state level of cysteine within a cell.
cellular cysteine homeostasis
cysteine homeostasis
Any process that stops, prevents or reduces the rate of translation as a result of increase in sucrose level.
negative regulation of translation in response to sucrose
Catalysis of the reaction: benzoate + S-adenosyl-L-methionine = methylbenzoate + S-adenosyl-L-homocysteine.
S-adenosyl-L-methionine:benzoate carboxyl methyltransferase activity
Any process that activates or increases the frequency, rate or extent of salicylic acid mediated signal transduction.
positive regulation of salicylic acid mediated signalling pathway
Any process that stops, prevents, or reduces the frequency, rate or extent of the reductive pentose-phosphate cycle.
negative regulation of C3 photosynthesis
negative regulation of Calvin cycle
The covalent alteration within the mitochondrion of one or more nucleotides within an mRNA to produce an mRNA molecule with a sequence that differs from that coded genetically.
mitochondrial mRNA editing
mitochondrial RNA editing
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving plant-type cell wall organization or biogenesis. Plant-type cell wall organization or biogenesis is a process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall.
regulation of plant-type cell wall organisation or biogenesis
The directed movement of auxins from endoplasmic reticulum to cytosol.
intracellular auxin transport
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of boron obtained from boron-containing substances.
cellular response to boron deprivation
cellular response to boron starvation
The process in which hydrogen peroxide is transported across a membrane.
hydrogen peroxide membrane transport
The initial contact step made between the male gamete and the female gamete during double fertilization forming a zygote and endosperm. An example can be found in Arabidopsis thaliana.
gamete recognition
male-female gamete recognition
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the plastoglobule. Plastoglobule is a lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids.
plastoglobule organisation
The chemical reactions and pathways involving the addition of a 5-carbamoylmethyl group to a uridine residue in RNA.
5-carbamoylmethyluridine metabolic process
A symbiont process in which a molecule secreted by the symbiont activates a resistance gene-dependent defense response signaling pathway in the plant host, in order to activate a hypersensitive response to induce necrosis. In the plant, this process involves the direct or indirect recognition of the symbiont effector protein for example through plant resistance receptor or R proteins (or R genes).
activation by organism of defense response in host by specific elicitors
activation by organism of host gene-for-gene resistance
activation by organism of host resistance gene-dependent defense response
activation by symbiont of host resistance gene-dependent defense response
activation of HR
activation of hypersensitive response
avirulence protein
effector-mediated induction of plant hypersensitive response by symbiont
effector-triggered immunity
effector-triggered induction of host innate immune response
effector-triggered induction of plant hypersensitive response by symbiont
effector-triggered necrosis
ETI triggered of host innate immune response
ETI-triggered of host innate immune response
induction by organism of defense response in host by specific elicitors
induction by organism of host gene-for-gene resistance
induction by organism of pathogen-race/host plant cultivar-specific resistance in host
induction by organism of resistance gene-dependent defense response of other organism involved in symbiotic interaction
induction by symbiont of host resistance gene-dependent defense response
induction of effector-triggered immunity (ETI)
necrotrophic effector
positive regulation by organism of defense response in host by specific elicitors
positive regulation by organism of host gene-for-gene resistance
positive regulation by symbiont of host resistance gene-dependent defense response
positive regulation by symbiont of plant HR
positive regulation by symbiont of plant hypersensitive response
The assembly of a stylet, a hollow protrusible spear-like symbiont structure projected into the host cell for the purpose of obtaining nutrients. The host is defined as the larger of the organisms involved in a symbiotic interaction.
formation by symbiont of stylet for nutrient acquisition from host
Any process in which a dormant state is maintained by the symbiont within the host organism.
non-replicating persistence
NRP
Exit from dormant state, also known as resuscitation, of the symbiont within the host organism.
resuscitation of symbiont
The invasion by a symbiont of a cell of a host organism, forming a vacuole in which the symbiont resides. The vacuole membrane is formed from lipids and proteins derived from both host and symbiont. Begins when the symbiont attaches on to the host cell membrane which invaginates and deepens as the symbiont enters, and ends when the host cell membrane closes behind the newly-formed vacuole.
symbiont entry into host cell forming a parasitophorous vacuole
symbiont entry into host cell forming a pathogen-containing vacuole
symbiont entry into host cell forming a symbiont-containing vacuole
The assembly of a symbiont-induced complex organelle that comprises of multiple protein and lipid domains for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
formation by symbiont of a tubovesicular network for nutrient acquisition from host
formation of a symbiont- induced tubovesicular network for nutrient acquisition from host
A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 6 of the ubiquitin monomers, is added to a protein. K6-linked ubiquitination is involved in DNA repair.
protein K6-linked polyubiquitination
A complex, symbiont-induced host-derived organelle that is comprised of multiple protein and lipid domains.
TVM network
TVN
A process carried out by symbiont gene products that enables a symbiotic interaction with a host organism, that is beneficial to the host organism.
mutualism
A process that initiates, promotes, or enhances a host NF-kappaB-mediated signaling cascade. The host is defined as the larger of the organisms involved in a symbiotic interaction.
activation by symbiont of host I-kappaB kinase/NF-kappaB cascade
induction by symbiont of host I-kappaB kinase/NF-kappaB cascade
induction of host canonical NF-kappaB signal transduction
induction of host I-kappaB kinase/NF-kappaB cascade
positive regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade
positive regulation by symbiont of host NF-kappaB-mediated signal transduction pathway
stimulation by symbiont of host I-kappaB kinase/NF-kappaB cascade
symbiont-mediated activation of host canonical NF-kappaB signal transduction
symbiont-mediated activation of host NF-kappaB signal transduction
up regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade
up-regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade
upregulation by symbiont of host I-kappaB kinase/NF-kappaB cascade
A process in which a symbiont interferes with, inhibits or disrupts an NF-kappaB-mediated signaling cascade in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
disruption of host canonical NF-kappaB cascade
disruption of host I-kappaB kinase/NF-kappaB cascade
negative regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade
suppression by symbiont of host I-kappaB kinase/NF-kappaB cascade
symbiont-mediated suppression of host canonical NF-kappaB cascade
A host-derived membrane surrounding the symbiont hypha during infection.
extra-invasive hyphal membrane
The process in which an organism effects a change that impairs the structure or function of the host organism cuticle. The host is defined as the larger of the organisms involved in a symbiotic interaction.
catabolism of host cuticle
degradation of host cuticle
disassembly by symbiont of host cuticle
A wide pore channel activity that enables a direct cytoplasmic connection from an SA node cell to an atrial cardiomyocyte. The gap junction passes electrical signals between the cells contributing to cardiac conduction.
gap junction channel activity involved in SA node cell-atrial cardiomyocyte electrical coupling
gap junction channel activity involved in SAN cell-atrial cardiomyocyte electrical coupling
gap junction channel activity involved in sinoatrial node cell-atrial cardiomyocyte electrical coupling
gap junction channel activity involved in sinus node cell-atrial cardiomyocyte electrical coupling
The process that mediates signaling interactions between an SA node cardiomyocyte and an atrial cardiomyocyte by transfer of current between their adjacent cytoplasms via intercellular protein channels.
SA node cardiac muscle cell to atrial cardiac muscle cell communication by electrical coupling
SA node cardiomyocyte to atrial cardiomyocyte communication by electrical coupling
SAN cardiomyocyte to atrial cardiomyocyte communication by electrical coupling
sinoatrial node cardiomyocyte to atrial cardiomyocyte communication by electrical coupling
sinus node cardiomyocyte to atrial cardiomyocyte communication by electrical coupling
The attachment of SA node cardiomyocyte to an atrial cardiomyocyte via adhesion molecules that results in the cells being juxtaposed so that they can communicate.
SA cardiac muscle cell-atrial cardiac muscle cell adhesion involved in cell communication
SA cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication
SAN cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication
sinoatrial node cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication
sinus node cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication
An adrenergic receptor signaling pathway that contributes to a reduction in cardiac muscle contraction. Beta-adrenergic receptor-induced cardiac relaxation is achieved by a GPCR-activated adenylate cyclase generating cAMP; cAMP then activates the cAMP-dependent protein kinase A (PKA), which phosphorylates the sarcoplasmic reticulum (SR) membrane protein PLB. In its non-phosphorylated state, PLB acts as an inhibitor of the ATPase Ca(2+) pump of the cardiac SR (SERCA2a); inhibition of the pump is relieved upon phosphorylation. The pump removes Ca(2+) from the cytoplasm, thereby preventing cytosolic Ca(2+)-dependent activation of contractile proteins, leading to enhanced muscle relaxation.
adrenergic receptor signaling pathway involved in cardiac muscle relaxation
adrenergic receptor signaling pathway involved in cardiac muscle relaxation via activation of AC
adrenergic receptor-induced cardiac relaxation
Gs-coupled adrenergic receptor signaling pathway involved in cardiac muscle relaxation
A G protein-coupled acetylcholine receptor signaling pathway that contributes to a decrease in frequency or rate of heart contraction. Binding of acetylcholine to a G protein-coupled (muscarinic) receptor on the surface of the signal-receiving cell results in the alpha subunit of a coupled G-protein binding to GTP. This results in the separation of the beta-gamma complex from the alpha subunit. Both the alpha subunit, and the beta-gamma complex can continue to signal to bring about membrane hyperpolarization and a reduction in heart rate.
G-protein coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate
M2 receptor signalling pathway involved in negative regulation of heart rate
muscarinic acetylcholine receptor signaling pathway involved in negative regulation of heart rate
muscarinic receptor signalling pathway involved in negative regulation of heart rate
A calcium-transporting P-type ATPase activity involved in regulation of the plasma membrane potential.
calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential
Enables the transfer of a solute or solutes from one side of a cardiac muscle cell membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). This transfer contributes to the regulation of the cardiac muscle cell plasma membrane potential.
sodium:hydrogen antiporter activity involved in regulation of cardiac muscle cell membrane potential
Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of an SA node cardiac muscle cell contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
voltage-gated potassium channel activity involved in SAN cell action potential depolarization
voltage-gated potassium channel activity involved in sinoatrial node cell action potential depolarization
voltage-gated potassium channel activity involved in sinus node cell action potential depolarization
The process that mediates signaling interactions between an atrial cardiomyocyte and an AV node cell by transfer of current between their adjacent cytoplasms via intercellular protein channels.
atrial cardiomyocyte to atrioventricular node cell communication by electrical coupling
atrial cardiomyocyte to AV node cell communication by electrical coupling
The process in which SA node cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential.
membrane depolarization involved in regulation of SA node cardiac muscle cell action potential
membrane depolarization involved in regulation of SAN cardiac muscle cell action potential
membrane depolarization involved in regulation of sinoatrial node cardiac muscle cell action potential
membrane depolarization involved in regulation of sinus node cardiac muscle cell action potential
The process in which bundle of His cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential.
membrane depolarization during bundle of His cardiac muscle cell action potential
The process in which ions are transported across a membrane such that the AV node cardiac muscle cell membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.
membrane repolarization involved in regulation of atrioventricular node cardiac muscle cell action potential
membrane repolarization involved in regulation of AV node cardiac muscle cell action potential
The process in which ions are transported across a membrane such that the bundle of His cardiac muscle cell membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.
membrane repolarization during bundle of His cardiac muscle cell action potential
The process in which an SA node cardiac muscle cell membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.
membrane repolarization involved in regulation of SA node cardiac muscle cell action potential
membrane repolarization involved in regulation of SAN cardiac muscle cell action potential
membrane repolarization involved in regulation of sinoatrial node cardiac muscle cell action potential
membrane repolarization involved in regulation of sinus node cardiac muscle cell action potential
The process that mediates signaling interactions between an AV node cardiomyocyte and a bundle of His cardiac muscle cell by transfer of current between their adjacent cytoplasms via intercellular protein channels.
atrioventricular node cell to bundle of His cell communication by electrical coupling
The process that mediates signaling interactions between a bundle of His cardiac muscle cell and a Purkinje myocyte by transfer of current between their adjacent cytoplasms via intercellular protein channels.
bundle of His cardiac muscle cell to Purkinje myocyte communication by electrical coupling
Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of an AV node cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
voltage-gated calcium channel activity involved in atrioventricular node cardiac muscle cell action potential
voltage-gated calcium channel activity involved in AV node cardiac muscle cell action potential