NothingMuch/GO-Terms huggingface dataset:
The process of assembly of a ring composed of actin, myosin, and associated proteins that will function in cytokinesis.
constriction ring assembly
contractile ring assembly
cytokinesis, actomyosin contractile ring assembly
cytokinesis, actomyosin contractile ring formation
cytokinesis, actomyosin ring biosynthesis
cytokinesis, actomyosin ring formation
cytokinesis, contractile ring assembly
myosin filament organisation involved in cytokinetic actomyosin contractile ring assembly
myosin filament organization involved in cytokinetic actomyosin contractile ring assembly
myosin filament organization of constriction ring assembly
myosin filament organization of contractile ring assembly
The process of an actomyosin ring getting smaller in diameter, in the context of cytokinesis that takes place as part of a cell cycle.
actomyosin contractile ring constriction
contractile ring contraction involved in cell cycle cytokinesis
cytokinesis, actomyosin ring contraction
cytokinesis, contractile ring contraction
The assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. The progeny cells that form a division septum are not able to exchange intracellular material.
division septum assembly involved in cell cycle cytokinesis
division septum assembly involved in cell cycle cytokinesis involved in mitotic cell cycle
division septum formation
division septum formation involved in cell cycle cytokinesis
division septum formation involved in cell cycle cytokinesis involved in mitotic cell cycle
division septum formation involved in mitotic cell cycle
formation of division septum
formation of division septum involved in mitotic cell cycle
mitotic division septum assembly
septation
septin assembly and septum biosynthesis
septin assembly and septum biosynthesis involved in mitotic cell cycle
septin assembly and septum formation
septin assembly and septum formation involved in mitotic cell cycle
The process of assembly, maturation, and growth of the cell plate to the cell periphery in cells that divide by cell plate formation; often involves deposition of cell wall material in and around the phragmoplast.
cell plate formation
The process of physically separating the septal cell wall material by enzymatic digestion, that occurs after daughter cells are separated by cytokinesis.
cell separation after cytokinesis
cell separation following cytokinesis
cytokinetic cell separation
daughter cell separation
mitotic cytokinetic cell separation
The aggregation, arrangement and bonding together of septins and associated proteins to form an organized structure resembling a ring at the cell cortex.
septin assembly and septum biosynthesis
septin assembly and septum formation
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
cytoplasmic foci
cytoplasmic mRNA processing body
P body
A septum or cross wall which does not entirely span the space between two portions of cell wall and may contain a specialized central pore structure. A porous septum allows the movement of organelles and/or cytoplasm between compartments.
porous septum
A cell septum which forms as part of the division site and functions in the compartmentalization of a cell into two daughter cells at division. A division septum spans a cell and does not allow exchange of organelles or cytoplasm between compartments.
cell septum surface
complete septum
septum surface
The region of a kinetochore closest to centromeric DNA which contains many CENP proteins organized in various subcomplexes including CENP-C, CENP-LN, CENP-HIKM, CENP-OPQUR and CENP-TWSX, but excluding the CENP-A containing heterochromatin.
condensed chromosome inner kinetochore
condensed nuclear chromosome inner kinetochore
inner centromere core complex
inner kinetochore of condensed chromosome
inner kinetochore of condensed nuclear chromosome
inner kinetochore plate
The region of a kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions.
condensed chromosome outer kinetochore
condensed nuclear chromosome outer kinetochore
outer kinetochore of condensed chromosome
outer kinetochore of condensed nuclear chromosome
outer kinetochore plate
The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
nuclear mRNA breakdown
nuclear mRNA catabolism
nuclear mRNA degradation
Any process involved in forming the mature 5' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion.
mitochondrial RNA 5\' end processing
Any process involved in forming the mature 3' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion.
mitochondrial RNA 3\' end processing
Any process involved in forming the mature 5' end of an RNA molecule.
RNA 5\' end processing
Any process involved in forming the mature 5' end of an rRNA molecule.
rRNA 5\' end processing
Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
bacterial-type RNA polymerase regulatory region DNA binding
bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding
eubacterial-type RNA polymerase regulatory region DNA binding
eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding
regulatory region DNA binding
transcription regulatory region DNA binding
transcription regulatory region sequence-specific DNA binding
Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
RNA polymerase II regulatory region DNA binding
Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II.
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
RNA polymerase II promoter proximal region sequence-specific DNA binding
RNA polymerase II proximal promoter sequence-specific DNA binding
RNA polymerase II upstream activating sequence (UAS) sequence-specific DNA binding
A DNA-binding transcription factor activity that modulates the transcription of specific gene sets transcribed by RNA polymerase II.
copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity
metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity
metal ion regulated sequence-specific DNA binding RNA polymerase II transcription factor activity
RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
RNA polymerase II transcription factor activity, copper ion regulated core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor activity, copper ion regulated proximal promoter sequence-specific DNA binding
RNA polymerase II transcription factor activity, metal ion regulated core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor activity, metal ion regulated proximal promoter sequence-specific DNA binding
RNA polymerase II transcription factor activity, metal ion regulated sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding
RNA polymerase II transcription factor activity, zinc ion regulated core promoter proximal region sequence-specific DNA binding
RNA polymerase II transcription factor activity, zinc ion regulated proximal promoter sequence-specific DNA binding
sequence-specific distal enhancer binding RNA polymerase II transcription factor activity
sequence-specific DNA binding RNA polymerase II transcription factor activity
sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity
transcription factor
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding
zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity
Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site, located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by some RNA polymerase. Cis-regulatory sites are often referred to as a sequence motifs, enhancers, or silencers.
bacterial-type cis-regulatory region sequence-specific DNA binding
bacterial-type proximal promoter sequence-specific DNA binding
bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
bacterial-type RNA polymerase enhancer sequence-specific DNA binding
bacterial-type RNA polymerase upstream activating sequence (UAS) sequence-specific DNA binding
cis-regulatory region binding
core promoter proximal region DNA binding
core promoter proximal region sequence-specific DNA binding
enhancer binding
enhancer sequence-specific DNA binding
eubacterial-type RNA polymerase regulatory transcription factor sequence-specific DNA binding
promoter proximal region sequence-specific DNA binding
proximal promoter sequence-specific DNA binding
Binding to an RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits.
RNA polymerase II core binding
RNAP II core binding
Binding to a bacterial-type RNA polymerase core enzyme, typically consisting of two alpha, one beta, one beta prime, and one omega subunit.
eubacterial-type RNA polymerase core enzyme binding
Binding to a DNA region that controls the transcription of a gene by RNA polymerase III. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
RNA polymerase III regulatory region DNA binding
Binding to an RNA polymerase III transcription factor, a protein required to initiate or regulate transcription by RNA polymerase III.
RNA polymerase III transcription factor binding
Binding to a sequence of DNA that is part of a core promoter region. The core promoter is composed of the transcription start site and binding sites for the RNA polymerase and the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon.
bacterial-type RNA polymerase core promoter sequence-specific DNA binding
core promoter binding
eubacterial-type RNA polymerase core promoter sequence-specific DNA binding
Binding to a single subunit RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.
SP6-type RNA polymerase binding
T3-type RNA polymerase binding
T3/T7 type RNA polymerase binding
T7-type RNA polymerase binding
The synthesis of RNA from a DNA template by RNA polymerase V, originating at a Pol V-specific promoter.
transcription from RNA pol V promoter
transcription from RNA polymerase V promoter
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
T3/T7 type RNA polymerase activity
Binding to a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair.
regulatory region nucleic acid binding
A transcription regulation process in which the presence of one nitrogen source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.
regulation of transcription from RNA polymerase II promoter by nitrogen catabolites
Binding to a basal RNA polymerase II transcription factor, any of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.
RNA polymerase II basal transcription factor binding
Binding to a component of the basal transcription machinery for RNA polymerase II which is composed of the RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits, and the basal RNA polymerase II transcription factors, the minimal set of factors required for formation of the preinitiation complex (PIC) by the RNA polymerase.
basal RNAP II transcription machinery binding
Any process involved in the inhibition of progression from anaphase/telophase (high mitotic CDK activity) to G1 (low mitotic CDK activity).
down regulation of exit from mitosis
down-regulation of exit from mitosis
downregulation of exit from mitosis
inhibition of exit from mitosis
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form.
response to acid
response to acid anion
response to oxoanion
Any process involved in the transition from the initiation to the elongation phases of transcription by a DNA-dependent RNA polymerase, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors.
promoter clearance during DNA-dependent transcription
promoter clearance from bacterial-type RNA polymerase promoter
promoter escape
A process that mediates the transition from the initiation to the elongation phases of transcription by RNA polymerase II, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors.
promoter clearance from RNA polymerase II promoter
promoter escape from RNA polymerase II promoter
promoter-paused RNA polymerase II release
Any process involved in the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble.
DNA-dependent transcriptional open complex formation
DNA-templated transcriptional open complex formation
promoter melting
transcription open complex formation at bacterial-type RNA polymerase promoter
transcriptional open complex formation at bacterial-type RNA polymerase promoter
Any process involved in the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase II preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble.
RNA polymerase II promoter melting
transcriptional open complex formation at RNA polymerase II promoter
Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-DNA-RNA complex.
protein-DNA-RNA complex subunit organisation
The acquisition, loss, or modification of macromolecules within a protein-DNA complex, resulting in the alteration of an existing complex.
protein-DNA complex remodelling
Binding to an intronic DNA sequence that regulates the transcription of the transcript it is contained within.
intronic transcription regulatory region DNA binding
Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase I.
RNA polymerase I regulatory region DNA binding
The synthesis of an RNA transcript from an RNA template.
transcription, RNA-dependent
transcription, RNA-templated
Any process involved in the selection of the specific location within the template strand of a DNA-dependent RNA polymerase promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript.
DNA-dependent transcriptional start site selection
transcriptional start site selection at bacterial-type RNA polymerase promoter
Suppression of the occurrence of transcriptional errors, such as substitutions and/or insertions of nucleotides that do not correctly match the template base, during the process of transcription elongation on a DNA template.
maintenance of transcriptional fidelity during DNA-dependent transcription elongation
maintenance of transcriptional fidelity during DNA-dependent transcription elongation from bacterial-type RNA polymerase promoter
maintenance of transcriptional fidelity during DNA-templated transcription elongation
maintenance of transcriptional fidelity during DNA-templated transcription elongation from bacterial-type RNA polymerase promoter
A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets.
bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
bacterial-type RNA polymerase transcriptional activator activity, metal ion regulated sequence-specific DNA binding
bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription
sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription
transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding
transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding
A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets.
bacterial-type DNA binding transcription repressor activity
bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
bacterial-type RNA polymerase transcriptional repressor activity, cadmium ion regulated sequence-specific DNA binding
bacterial-type RNA polymerase transcriptional repressor activity, copper ion regulated sequence-specific DNA binding
bacterial-type RNA polymerase transcriptional repressor activity, metal ion regulated sequence-specific DNA binding
bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding
cadmium ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription
copper ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription
metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription
sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription
transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding
transcriptional repressor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding
Binding to a transcription coregulator, a protein involved in regulation of transcription via protein-protein interactions with transcription factors and other transcription regulatory proteins. Cofactors do not bind DNA directly, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery.
RNA polymerase II transcription cofactor binding
RNA polymerase II transcription coregulator binding
transcription cofactor binding
Excision from the chromosome and circularization of a region of chromosomal DNA, generally, but not always, via homologous recombination between direct tandem repeats.
assembly of extrachromosomal circular DNA
A growth pattern exhibited by budding haploid cells under certain growth conditions, in which cells retain the typical axial budding pattern of haploids, but become elongated and fail to separate after division; during growth on a solid substrate, this results in penetration of cells into the agar medium. An example of this process is found in Saccharomyces cerevisiae.
colony morphology
The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
skeletal development
The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
bone biosynthesis
bone formation
osteogenesis
The directed movement of neurotransmitters into neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters.
neurotransmitter import
neurotransmitter import into glial cell
neurotransmitter import into neuron
neurotransmitter recycling
The chemical reactions and pathways resulting in the formation of prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring.
prostaglandin anabolism
prostaglandin biosynthesis
prostaglandin formation
prostaglandin synthesis
The intramolecular conversion of uridine to pseudouridine within an RNA molecule.
pseudouridylation
The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
retinoid metabolism
Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
blood vessel formation from pre-existing blood vessels  systematic_synonym
Protein complex forming portion of the radial spoke that is orthogonal to the elongated stalk and which projects towards the central pair of microtubules within the ciliary or flagellum axoneme.
radial spokehead
Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella.
ciliary or bacterial-type flagellar motility
ciliary/flagellar motility
The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure.
follicular phase
The menstrual cycle process that results in the formation of one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells during the various stages of oogenesis.
ovarian follicle antrum/follicular fluid biosynthesis
ovarian follicle antrum/follicular fluid formation