NothingMuch/GO-Terms huggingface dataset:
A process by which a virus establishes a latent state within its host, either as an integrated provirus within the host genome or as an episome, where viral genome remains in the cytoplasm or nucleus as distinct objects.
lysogenic commitment
phage lysogeny
The process in which a virus effects a change in the structure or processes of its host organism.
disruption by virus of host cell
host-virus interaction
modulation by virus of host anatomical structure or process
modulation by virus of host anatomy or process
modulation by virus of host morphology or physiology
viral interaction with host
viral-host process
virus-host interaction
virus-host process
A process in which a virus interferes with the ability of the host to mount a defense in response to its presence. Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction.
evasion of host defenses by virus
mitigation of host antiviral defense response
mitigation of host defenses by virus
perturbation of host defense response by virus
regulation by virus of antiviral response
regulation of defense response to virus by virus
viral host defence evasion
viral host defense evasion
viral regulation of antiviral response
The process in which a virus effects a change in the processes and activities of its host organism.
modification by virus of host cellular process
modulation by virus of host process
modulation of cellular process in host by virus
regulation by virus of host cellular process
regulation of cellular process in host by virus
regulation of host cellular process by virus
viral host cell process manipulation
A process in which a symbiont alters or subverts translation of mRNA into protein in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction.
host cell protein synthesis shutoff
modification by virus of host cell mRNA translation
modulation by virus of host translation
modulation of host translation by virus
regulation of host mRNA translation
regulation of host translation
viral perturbation of host cell mRNA translation
A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
lytic viral life cycle
viral assembly, maturation, egress, and release
viral infectious cycle
viral replication
The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
viral absorption
viral attachment to host cell
virion attachment to host cell surface receptor
Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
viral entry into host cell via membrane fusion with the plasma membrane
viral envelope fusion
viral envelope fusion with host cell membrane
viral envelope fusion with host membrane
viral envelope fusion with host plasma membrane
viral penetration via membrane fusion
viral-cell fusion molecule activity
Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
receptor mediated endocytosis by host of virus particle
receptor mediated endocytosis of virus by host
receptor mediated endocytosis of virus particle by host
receptor-mediated endocytosis of virus by host
viral entry into host cell via receptor-mediated endocytosis
viral receptor mediated endocytosis
virus receptor-mediated endocytosis by host
A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
bacteriophage assembly
phage assembly
viral assembly
viral particle assembly
virion assembly and maintenance
virion organization
virus assembly
virus particle assembly
The refolding and structural rearrangements of virion parts to transition from the intermediate virion to the more mature virion. Maturation usually involves proteolysis events and changes in the folding of the virion proteins. Can occur inside the host cell or after release.
bacteriophage maturation
viral maturation
The dissemination of mature viral particles from a host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
release of virus from host
viral exit
viral release
viral shedding
virus exit from host cell
Any process involved directly in viral genome replication, including viral nucleotide metabolism.
sigma virus replication
viral replication
A process by which a viral gene is converted into a mature gene product or products (proteins or RNA). This includes viral transcription, processing to produce a mature RNA product, and viral translation.
viral genome expression
A process by which viral mRNA is translated into viral protein, using the host cellular machinery.
viral protein anabolism
viral protein biosynthesis
viral protein biosynthetic process
viral protein formation
viral protein synthesis
A virus-induced cellular transformation resulting in immortalized cells, or cells capable of indefinite replication.
host cell immortalization
host cell transformation
immortalization of host cell
immortalization of host cell by virus
transformation of host cell
viral immortalization
viral transformation
viral transformation of host cell
The process in which a rRNA, ribosomal ribonucleic acid, is transported from the mitochondrial matrix into the cytosol.
export of mitochondrial rRNA
mitochondrial rRNA export
mitochondrial rRNA export from mitochondria
mitochondrial rRNA export out of mitochondrion
mitochondrial rRNA transport from mitochondrion
mitochondrial rRNA, mitochondrial export
Any process in which mitochondrial RNA is transported to, or maintained in, a specific location.
establishment and maintenance of mitochondrial RNA localization
mitochondrial RNA localisation
mtRNA localization
Any process in which mRNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.
establishment and maintenance of mRNA localization in pole plasm
establishment and maintenance of pole plasm mRNA localization
oocyte pole plasm mRNA localization
pole granule RNA localization
pole plasm mRNA localisation
Any process in which mitochondrial ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.
establishment and maintenance of mitochondrial rRNA localization in pole plasm
oocyte pole plasm mitochondrial rRNA localization
pole plasm mitochondrial rRNA localisation
The specific behavior of an organism that is associated with reproduction.
multi-organism reproductive behavior
multicellular organism reproductive behavior
reproductive behavior in a multicellular organism
reproductive behaviour
single-organism reproductive behavior
Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site.
DNA glycosylase activity
endonuclease VIII activity
Catalysis of the reaction: ATP + 2'-deoxynucleoside = ADP + 2'-deoxynucleoside 5'-phosphate.
ATP:deoxynucleoside 5\'-phosphotransferase activity
D. melanogaster deoxynucleoside kinase activity
Dm-dNK
ms-dNK
Ms-dNK activity
multifunctional deoxynucleoside kinase activity
multispecific deoxynucleoside kinase activity
multisubstrate deoxyribonucleoside kinase activity
Catalysis of the reaction: ADP-sugar + H2O = AMP + sugar 1-phosphate.
adenosine diphosphosugar pyrophosphatase activity
ADP-sugar pyrophosphatase activity
ADP-sugar sugarphosphohydrolase activity
ADPsugar pyrophosphatase activity
nucleoside diphosphate-sugar hydrolase activity
Catalysis of the reaction: acetoin + NAD+ = diacetyl + NADH + H+. This reaction is catalyzed in the reverse direction.
diacetyl reductase activity
The biosynthetic process in which peptide bond formation occurs in the absence of the translational machinery. Examples include the synthesis of antibiotic peptides, and glutathione.
non-ribosomal peptide biosynthesis
non-ribosomal peptide biosynthetic process
non-ribosomal peptide formation
non-ribosomal peptide synthesis
nonribosomal peptide anabolism
nonribosomal peptide biosynthesis
nonribosomal peptide formation
nonribosomal peptide synthesis
nonribosomal peptide synthetase
Enables the transfer of cellobiose from one side of a membrane to the other. Cellobiose, or 4-O-beta-D-glucopyranosyl-D-glucose, is a disaccharide that represents the basic repeating unit of cellulose.
cellobiose permease activity
Enables the transfer of sorbose from one side of a membrane to the other. Sorbose is the ketohexose xylo-2-hexulose; L-sorbose is formed by bacterial oxidation of sorbitol. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid.
sorbose porter activity
Enables the transfer of galactosamine from one side of a membrane to the other. Galactosamine is an aminodeoxysugar; D-galactosamine is a constituent of some glycolipids and glycosaminoglycans, commonly as its N-acetyl derivative.
galactosamine porter activity
Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate.
nucleobase, nucleoside, nucleotide kinase activity
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids.
regulation of lipid metabolism
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids.
regulation of fatty acid metabolism
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving steroids.
regulation of steroid metabolism
Any cellular process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.
regulation of phosphate metabolism
The series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with the regulation of a downstream cellular process, e.g. transcription.
cytokine and chemokine mediated signaling pathway
cytokine mediated signalling pathway
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
regulation of metabolism
regulation of multicellular organismal metabolic process
regulation of organismal metabolic process
The neurological system process in which a signal is transmitted through the nervous system by a combination of action potential propagation and synaptic transmission.
conduction of nerve impulse
signal transmission along a neuron
An action potential that occurs in a neuron.
generation of action potential
The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process.
nociception
perception of physiological pain
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus.
pheromone response
The chemical reactions and pathways resulting in the formation of citrulline, N5-carbamoyl-L-ornithine, an alpha amino acid not found in proteins.
citrulline anabolism
citrulline biosynthesis
citrulline formation
citrulline synthesis
The chemical reactions and pathways resulting in the formation of lactate from other compounds, including pyruvate.
lactate anabolism from pyruvate
lactate formation from pyruvate
lactate synthesis from pyruvate
pyruvate fermentation to lactate
The chemical reactions and pathways resulting in the formation of lactate, the anion of lactic acid.
lactate anabolism
lactate biosynthesis
lactate formation
lactate synthesis
The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants.
starch anabolism
starch biosynthesis
starch formation
starch synthesis
The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
C3 photosynthesis
Calvin cycle
The chemical reactions and pathways involving glucose 1-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-1.
glucose 1-phosphate metabolism
glucose 1-phosphate utilization
The chemical reactions and pathways involving 4-nitrotoluene, 1-methyl-4-nitrobenzene. It is a light yellow liquid with a weak aromatic odor.
4-nitrotoluene metabolism
4NT metabolic process
4NT metabolism
The chemical reactions and pathways involving UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
UDP-N-acetylgalactosamine metabolism
The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including L-homoserine, via the intermediate cystathionine.
L-methionine anabolism from L-homoserine via cystathionine
L-methionine formation from L-homoserine via cystathionine
L-methionine synthesis from L-homoserine via cystathionine
methionine biosynthetic process from L-homoserine via cystathionine
The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates.
Ac-MVA pathway
acetate-mevalonate pathway
isopentenyl diphosphate anabolism, mevalonate pathway
isopentenyl diphosphate biosynthetic process via mevalonate
isopentenyl diphosphate formation, mevalonate pathway
isopentenyl diphosphate synthesis, mevalonate pathway
The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.
isopentenyl diphosphate anabolism, mevalonate-independent pathway
isopentenyl diphosphate biosynthesis, mevalonate-independent
isopentenyl diphosphate biosynthesis, non-mevalonate pathway
isopentenyl diphosphate biosynthetic process via 1-deoxy-D-xylulose 5-phosphate
isopentenyl diphosphate biosynthetic process, MEP pathway
isopentenyl diphosphate biosynthetic process, mevalonate-independent
isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
isopentenyl diphosphate biosynthetic process, non-mevalonate pathway
isopentenyl diphosphate formation, mevalonate-independent pathway
isopentenyl diphosphate synthesis, mevalonate-independent pathway
mevalonate-independent isopentenyl diphosphate biosynthesis
mevalonate-independent isopentenyl diphosphate biosynthetic process
non-MVA pathway
The chemical reactions and pathways resulting in the formation of siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action.
siderochrome biosynthesis
siderochrome biosynthetic process
siderophore anabolism
siderophore biosynthesis
siderophore biosynthetic process, peptide formation
siderophore biosynthetic process, peptide modification
siderophore formation
siderophore synthesis
The chemical reactions and pathways involving coenzyme M (2-thioethansulfonate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.
coenzyme M metabolism
The chemical reactions and pathways involving coenzyme B (7-mercaptoheptanoylthreonine phosphate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.
coenzyme B metabolism
The chemical reactions and pathways involving rhamnose, the hexose 6-deoxy-L-mannose. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids.
rhamnose metabolism
The chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose.
rhamnose breakdown
rhamnose catabolism
rhamnose degradation
The chemical reactions and pathways resulting in the breakdown of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose.
mannose breakdown
mannose catabolism
mannose degradation
The chemical reactions and pathways involving sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid.
sorbose metabolism
The chemical reactions and pathways involving sorbose, the L-enantiomer of the ketohexose xylo-2-hexulose. L-sorbose is formed by bacterial oxidation of sorbitol.
L-sorbose metabolism
The chemical reactions and pathways involving D-allose, the D-enantiomer of allo-hexose, an aldohexose similar to glucose.
D-allose metabolism
The chemical reactions and pathways resulting in the breakdown of fucose (6-deoxygalactose).
fucose breakdown
fucose catabolism
fucose degradation
The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule.
hexose metabolism
The chemical reactions and pathways resulting in the formation of hexose, any monosaccharide with a chain of six carbon atoms in the molecule.
hexose anabolism
hexose biosynthesis
hexose formation
hexose synthesis
The chemical reactions and pathways resulting in the breakdown of hexose, any monosaccharide with a chain of six carbon atoms in the molecule.
hexose breakdown
hexose catabolism
hexose degradation
The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
pentose metabolism
The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
pentose anabolism
pentose biosynthesis
pentose formation
pentose synthesis
The chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
pentose breakdown
pentose catabolism
pentose degradation
The chemical reactions and pathways involving nitrotoluene, any methylbenzene molecule with NO2 group(s) attached.
nitrotoluene metabolism
The chemical reactions and pathways involving aldoximes, compounds derived by the reaction of an aldose with hydroxylamine, thus containing the aldoxime group -HC=NOH.
aldoxime metabolism
The chemical reactions and pathways resulting in the breakdown of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring.
phenol-containing compound breakdown
phenol-containing compound catabolism
phenol-containing compound degradation
The chemical reactions and pathways resulting in the formation of trypanothione (N1,N6,-bis(glutathionyl)spermidine) in two steps from glutathione and spermidine via an N1- or N8-glutathionylspermidine intermediate. Trypanothione appears to be an essential redox intermediate in intracellular thiol redox regulation. It also plays a role in protecting against oxidative stress.
trypanothione anabolism
trypanothione biosynthesis
trypanothione formation
trypanothione synthesis
The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid.
cysteine anabolism
cysteine biosynthesis
cysteine formation
cysteine synthesis
The chemical reactions and pathways involving dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units.
dolichol metabolism
The chemical reactions and pathways involving ribitol, a pentitol derived formally by reduction of the -CHO group of either D- or L-ribose. It occurs free in some plants and is a component of riboflavin.
ribitol metabolism
The chemical reactions and pathways resulting in the formation of teichoic acid, any polymer occurring in the cell wall, membrane or capsule of Gram-positive bacteria and containing chains of glycerol phosphate or ribitol phosphate residues.
teichoic acid anabolism
teichoic acid biosynthesis
teichoic acid formation
teichoic acid synthesis
The chemical reactions and pathways resulting in the formation of nicotinamide nucleotides, any nucleotide that contains combined nicotinate (pyridine 3-carboxylic acid).
nicotinate nucleotide anabolism
nicotinate nucleotide biosynthesis
nicotinate nucleotide formation
nicotinate nucleotide synthesis
The chemical reactions and pathways resulting in the formation of nicotinamide nucleotides, any nucleotide that contains combined nicotinamide.
nicotinamide nucleotide anabolism
nicotinamide nucleotide biosynthesis
nicotinamide nucleotide formation
nicotinamide nucleotide synthesis
The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
pyridine nucleotide metabolism
The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
pyridine nucleotide anabolism
pyridine nucleotide biosynthesis
pyridine nucleotide formation
pyridine nucleotide synthesis
The chemical reactions and pathways resulting in the breakdown of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
pyridine nucleotide breakdown
pyridine nucleotide catabolism
pyridine nucleotide degradation
Any process that generates a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base, from derivatives of them without de novo synthesis.
pyridine nucleotide cycling
The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer.
arachidonic acid metabolic process
arachidonic acid metabolism
The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid.
leukotriene anabolism
leukotriene biosynthesis
leukotriene formation
leukotriene synthesis
The chemical reactions and pathways involving galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine.
galactolipid metabolism