NothingMuch/GO-Terms huggingface dataset:
The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.
cell wall modification during cell expansion
cellulose and pectin-containing cell wall modification during multidimensional cell growth
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana.
cellulose and pectin-containing primary cell wall biogenesis
primary cell wall anabolism
primary cell wall biogenesis
primary cell wall biosynthetic process
primary cell wall formation
primary cell wall synthesis
The chemical reactions and pathways resulting in the formation of indoleacetic acid, independent of tryptophan.
indoleacetic acid biosynthesis, tryptophan-independent
indoleacetic acid biosynthetic process, tryptophan-independent
tryptophan-independent IAA biosynthetic process
tryptophan-independent indoleacetic acid anabolism
tryptophan-independent indoleacetic acid biosynthesis
tryptophan-independent indoleacetic acid formation
tryptophan-independent indoleacetic acid synthesis
The series of molecular signals mediated by jasmonic acid involved in induced systemic resistance.
induced systemic resistance, jasmonic acid mediated signalling pathway
jasmonic acid mediated signaling pathway (induced systemic resistance)
The series of molecular signals mediated by ethylene (ethene) involved in induced systemic resistance.
ethene mediated signaling pathway (induced systemic resistance)
ethylene mediated signaling pathway (induced systemic resistance)
induced systemic resistance, ethene mediated signaling pathway
induced systemic resistance, ethene mediated signalling pathway
induced systemic resistance, ethylene mediated signalling pathway
The series of molecular signals mediated by jasmonic acid involved in jasmonic acid/ethylene (ethene) dependent systemic resistance.
jasmonic acid and ethene-dependent systemic resistance, jasmonic acid mediated signaling pathway
jasmonic acid mediated signaling pathway (jasmonic acid/ethene-dependent systemic resistance)
jasmonic acid mediated signaling pathway (jasmonic acid/ethylene-dependent systemic resistance)
jasmonic acid/ethene-dependent systemic resistance, jasmonic acid mediated signaling pathway
jasmonic acid/ethene-dependent systemic resistance, jasmonic acid mediated signalling pathway
jasmonic acid/ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway
jasmonic acid/ethylene-dependent systemic resistance, jasmonic acid mediated signalling pathway
The series of molecular signals mediated by ethylene (ethene) involved in jasmonic acid/ethylene dependent systemic resistance.
ethene mediated signaling pathway (jasmonic acid/ethene-dependent systemic resistance)
ethylene mediated signaling pathway (jasmonic acid/ethylene-dependent systemic resistance)
jasmonic acid and ethene-dependent systemic resistance, ethene mediated signaling pathway
jasmonic acid/ethene-dependent systemic resistance, ethene mediated signaling pathway
jasmonic acid/ethene-dependent systemic resistance, ethene mediated signalling pathway
jasmonic acid/ethylene-dependent systemic resistance, ethylene mediated signaling pathway
jasmonic acid/ethylene-dependent systemic resistance, ethylene mediated signalling pathway
The formation of nitrogen-fixing root nodules on plant roots.
nodule development
nodule formation
nodule morphogenesis
The establishment of an organism's body plan or a part of an organism such that it is symmetric around a central axis.
determination of radial asymmetry
Catalysis of the reaction: ent-copalyl diphosphate = ent-kaur-16-ene + diphosphate.
ent-copalyl-diphosphate diphosphate-lyase (cyclizing)
ent-copalyl-diphosphate diphosphate-lyase (cyclizing, ent-kaurene-forming)
ent-kaurene synthase B activity
ent-kaurene synthetase B activity
The relocation process in which chloroplasts in photosynthetic cells avoid strong light and move away from it in order to preserve the photosynthetic machinery.
high-fluence-rate response
The relocation process in which chloroplasts in photosynthetic cells move toward a brighter area in a cell to optimize photosynthesis.
low-fluence-rate response
Catalysis of the reaction: all-trans-geranylgeranyl diphosphate = ent-copalyl diphosphate.
diterpene cyclase activity
ent-copalyl-diphosphate lyase (decyclizing)
ent-kaurene synthase A activity
ent-kaurene synthetase A activity
Any process that stops, prevents, or reduces the frequency, rate or extent of flower development.
down regulation of flower development
down-regulation of flower development
downregulation of flower development
inhibition of flower development
Any process that activates or increases the frequency, rate or extent of flower development.
activation of flower development
stimulation of flower development
up regulation of flower development
up-regulation of flower development
upregulation of flower development
The cell cycle process in which the cell plate is formed at the equator of the spindle in the dividing cells during early telophase. An example of this is found in Arabidopsis thaliana.
cell plate formation involved in cellulose and pectin-containing cell wall biogenesis
Catalysis of the reaction: a very-long-chain acyl-CoA + H+ + malonyl-CoA = a very-long-chain 3-oxoacyl-CoA + CO2 + CoA. This reaction is the first (condensation) step of the four-step fatty acid elongation cycle in the endoplasmic reticulum that extends fatty acids of C-16 or longer with an additional 2-C unit.
condensing enzyme
elongation of very long chain fatty acids activity
ELOVL
very-long-chain 3-ketoacyl-CoA synthase
very-long-chain 3-oxoacyl-CoA synthase
very-long-chain beta-ketoacyl-CoA synthase
Any process that modulates the frequency, rate or extent of meristem organization.
regulation of meristem organisation
regulation of meristem organization
Any process that stops, prevents, or reduces the frequency, rate or extent of gibberellic acid mediated signaling activity.
down regulation of gibberellic acid mediated signaling
down-regulation of gibberellic acid mediated signaling
downregulation of gibberellic acid mediated signaling
inhibition of gibberellic acid mediated signaling
negative regulation of gibberellic acid mediated signalling
Any process that activates or increases the frequency, rate or extent of gibberellic acid mediated signaling activity.
activation of gibberellic acid mediated signaling
positive regulation of gibberellic acid mediated signalling
stimulation of gibberellic acid mediated signaling
up regulation of gibberellic acid mediated signaling
up-regulation of gibberellic acid mediated signaling
upregulation of gibberellic acid mediated signaling
The establishment, maintenance and elaboration of the longitudinal axis. In plants, this is the axis that runs from the shoot to the root.
apical-basal pattern specification
longitudinal axis determination
The establishment, maintenance and elaboration of the centrolateral axis. In plants, this axis is duplicated and runs from the midrib to the margin of the leaf.
centrolateral axis determination
mediolateral axis specification
Any process resulting in the establishment of polarity along the dorsal/ventral axis.
polarity specification of dorsal-ventral axis
polarity specification of dorsoventral axis
The orientation of plant parts towards gravity.
root gravitropism
The orientation of plant parts away from gravity.
shoot gravitropism
The chemical reactions and pathways resulting in the formation of xyloglucan, the cross-linking glycan composed of (1->4)-beta-D glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
xyloglucan anabolism
xyloglucan biosynthesis
xyloglucan formation
xyloglucan synthesis
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate.
cellular response to sulphate starvation
Catalysis of the reaction: A + AMP + 2 H+ + sulfite = adenosine 5'-phosphosulfate + AH2.
adenosine phosphosulfate reductase activity
adenylyl-sulphate reductase activity
APS reductase activity
Catalysis of the transfer of proteins from one side of a membrane to the other. Transportation is dependent on pH gradient across the membrane.
arginine targeting transmembrane transporter activity
delta-pH-dependent protein transporter activity
pH-dependent protein transporter activity
twin-arginine targeting transmembrane transporter activity
Catalysis of the reaction: 13(S)-hydroperoxylinolenate = 12,13(S)-epoxylinolenate + H2O.
(9Z,11E,14Z)-(13S)-hydroperoxyoctadeca-9,11,14-trienoate 12,13-hydro-lyase
(9Z,11E,14Z)-(13S)-hydroperoxyoctadeca-9,11,14-trienoate 12,13-hydro-lyase activity
HPI
hydroperoxide dehydratase activity
hydroperoxide isomerase activity
linoleate hydroperoxide isomerase
linoleic acid hydroperoxide isomerase
A homeostatic process involved in the maintenance of a steady state level of water within a cell.
cellular osmoregulation
cellular water homeostasis
Any process that restricts, stops or prevents a cell from specifying into a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.
down regulation of cardioblast cell fate specification
down-regulation of cardioblast cell fate specification
downregulation of cardioblast cell fate specification
inhibition of cardioblast cell fate specification
suppression of cardioblast cell fate
Any process that restricts, stops or prevents a cell from specifying into a retinal cone cell.
down regulation of retinal cone cell fate specification
down-regulation of retinal cone cell fate specification
downregulation of retinal cone cell fate specification
inhibition of retinal cone cell fate specification
negative regulation of retina cone cell fate specification
suppression of retina cone cell fate
suppression of retinal cone cell fate
Any process that restricts, stops or prevents a cell from specifying into an auditory hair cell.
down regulation of auditory receptor cell fate specification
down-regulation of auditory receptor cell fate specification
downregulation of auditory receptor cell fate specification
inhibition of auditory receptor cell fate specification
negative regulation of auditory hair cell fate specification
suppression of auditory receptor cell fate
suppression of hair cell fate
Binding to auxin, a plant hormone that regulates aspects of plant growth.
auxin receptor
The series of molecular signals initiated upon sensing of far red light by a photoreceptor molecule. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
far red light signalling pathway
far red signaling pathway
far-red light signal transduction
The process in which a molecular signal is transduced between the chloroplast and nucleus, such that expression of nuclear encoding photosynthetic proteins is coupled with chloroplast biogenesis.
chloroplast-nucleus signalling pathway
The chemical reactions and pathways resulting in the formation of amylopectin, the (1->4) linked alpha glucose units with alpha-(1->6) linkages.
amylopectin anabolism
amylopectin biosynthesis
amylopectin formation
amylopectin synthesis
The chemical reactions and pathways resulting in the formation of phytochromobilin, which involves the oxidative cleavage of heme by a heme oxygenase(HO) to form biliverdin IX alpha.
phytochromobilin anabolism
phytochromobilin biosynthesis
phytochromobilin formation
phytochromobilin synthesis
Any process that activates or increase the rate of seed germination.
activation of seed germination
stimulation of seed germination
up regulation of seed germination
up-regulation of seed germination
upregulation of seed germination
Compaction of chromatin structure prior to meiosis in eukaryotic cells.
chromosome condensation involved in meiotic cell cycle
The process in which a plant acquires the ability to respond to a floral inductive signal.
acquisition of reproductive competence
Any process that induces or promotes atrichoblast fate specification.
activation of atrichoblast fate
stimulation of atrichoblast fate
up regulation of atrichoblast fate
up-regulation of atrichoblast fate
upregulation of atrichoblast fate
Any process that suppresses atrichoblast fate specification.
down regulation of atrichoblast fate
down-regulation of atrichoblast fate
downregulation of atrichoblast fate
inhibition of atrichoblast fate
Any process that suppresses trichoblast fate specification.
down regulation of trichoblast fate
down-regulation of trichoblast fate
downregulation of trichoblast fate
inhibition of trichoblast fate
Any process that induces or promotes trichoblast fate specification.
activation of trichoblast fate
stimulation of trichoblast fate
up regulation of trichoblast fate
up-regulation of trichoblast fate
upregulation of trichoblast fate
The process in which the anatomical structures of embryonic shoot are generated and organized.
primary shoot system morphogenesis
The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers.
embryo shoot apical meristem specification
Any process involved in maintaining the size and shape of a floral meristem.
regulation of floral meristem size
Any process involved in maintaining the size and shape of an inflorescence meristem.
regulation of inflorescence meristem size
Any process involved in maintaining the size and shape of a root meristem.
regulation of root meristem size
Any process involved in maintaining the size and shape of a vegetative meristem.
regulation of vegetative meristem size
Any process that stops, reduces or prevents photomorphogenesis.
down regulation of photomorphogenesis
down-regulation of photomorphogenesis
downregulation of photomorphogenesis
inhibition of photomorphogenesis
Any process that stops or prevents ethylene (ethene) signal transduction.
down regulation of ethylene mediated signaling pathway
down-regulation of ethylene mediated signaling pathway
downregulation of ethylene mediated signaling pathway
inhibition of ethylene mediated signaling pathway
negative regulation of ethene mediated signaling pathway
negative regulation of ethene mediated signalling pathway
negative regulation of ethylene mediated signaling pathway
negative regulation of ethylene mediated signalling pathway
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the glyoxysome. A glyoxysome is a microbody that contains the enzymes of the glyoxylate pathway.
glyoxysome organisation
glyoxysome organization and biogenesis
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid.
activation of abscisic acid biosynthetic process
positive regulation of abscisic acid anabolism
positive regulation of abscisic acid biosynthesis
positive regulation of abscisic acid formation
positive regulation of abscisic acid synthesis
stimulation of abscisic acid biosynthetic process
up regulation of abscisic acid biosynthetic process
up-regulation of abscisic acid biosynthetic process
upregulation of abscisic acid biosynthetic process
The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including proline, via ornithine.
arginine breakdown to proline via ornithine
arginine degradation to proline via ornithine
The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including alanine, via ornithine.
arginine breakdown to alanine via ornithine
arginine degradation to alanine via ornithine
The chemical reactions and pathways resulting in the breakdown of phenylacetate.
phenylacetate breakdown
phenylacetate catabolism
phenylacetate degradation
The chemical reactions and pathways resulting in the formation of mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione.
mycothiol anabolism
mycothiol biosynthesis
mycothiol formation
mycothiol synthesis
The chemical reactions using mycothiol to convert an alkylating agent to an S-conjugate of mycothiol. The latter is cleaved to release mercapturic acid which is excreted from the cell.
mycothiol-dependent detoxification of alkylating agent
The chemical reactions and pathways resulting in the breakdown of benzoate, by its ligation to Coenzyme A to form benzoyl-CoA, which is then broken by an aerobic or anaerobic pathway.
anaerobic benzoate breakdown
anaerobic benzoate catabolic process
anaerobic benzoate catabolism
anaerobic benzoate degradation
The chemical reactions and pathways resulting in the breakdown of cyclohexane-1-carboxylate, a alicyclic acid, in the absence of oxygen.
anaerobic cyclohexane-1-carboxylate breakdown
anaerobic cyclohexane-1-carboxylate catabolism
anaerobic cyclohexane-1-carboxylate degradation
The chemical reactions and pathways resulting in the breakdown of ethylbenzene, a benzene derivative with an ethyl group attached to the ring, which occurs in the absence of oxygen.
anaerobic ethylbenzene breakdown
anaerobic ethylbenzene catabolism
anaerobic ethylbenzene degradation
The chemical reactions and pathways resulting in the formation of dhurrin, a cyanogenic glucoside which functions as a plant defense compound.
dhurrin anabolism
dhurrin biosynthesis
dhurrin formation
dhurrin synthesis
The pathway by which inorganic sulfate is activated, reduced and incorporated into sulfated compounds, where the activated sulfate, adenylyl-sulfate, is reduced to sulfite by the activity of adenylyl-sulfate reductase.
sulphate assimilation via adenylyl sulphate reduction
The chemical reactions and pathways resulting in the breakdown of ureide, which is the organic form of nitrogen in nitrogen fixing and transporting plants with the release of ammonium.
ureide breakdown
ureide catabolism
ureide degradation
The chemical reactions and pathways resulting in the formation of ureide, the organic form of nitrogen in nitrogen fixing and transporting plants, from IMP, which is synthesized de novo during nitrogen fixation by roots.
ureide anabolism
ureide biosynthesis
ureide formation
ureide synthesis
The pathway that converts acetate, in the form of acetyl-CoA, to farnesyl diphosphate (FPP) through a series of mevalonate intermediates. Farnesyl diphosphate is an important substrate for other essential pathways, such as biosynthesis of sterols.
Ac-MVA pathway
acetate-mevalonate pathway
farnesyl diphosphate anabolism, mevalonate pathway
farnesyl diphosphate formation, mevalonate pathway
farnesyl diphosphate synthesis, mevalonate pathway
isoprenoid pathway
The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, the active form of vitamin B6, from pyridoxamine.
pyridoxal 5\'-phosphate salvage from pyridoxamine
pyridoxal phosphate anabolism from pyridoxamine
pyridoxal phosphate formation from pyridoxamine
pyridoxal phosphate synthesis from pyridoxamine
vitamin B6 biosynthesis from pyridoxamine
vitamin B6 biosynthetic process from pyridoxamine
The series of molecular signals initiated upon sensing of red light by a photoreceptor molecule. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
red light phototransduction
red light signal transduction
red light signalling pathway
A novel compartment found in plant cells that is derived from the ER. The structures have a characteristic shape and size (10 mm long and 0.5 mm wide) and are surrounded with ribosomes. They have been found in Arabidopsis thaliana and related Brassicaceae species.
endoplasmic reticulum body
A large (200-800 kDa) multiprotein complex formed by 70-kDa and 5-kDa myrosinases, myrosinase- binding proteins (MBPs), MBP-related proteins and myrosinase-associated proteins. The complex has been identified in Brassica napus seeds.
myrosinase complex
Enables the transfer of a nucleoside, from one side of a membrane to the other, up a concentration gradient.
concentrative nucleoside transporter activity
Catalysis of the reaction: acetyl-CoA + an omega-(methylsulfanyl)-2-oxoalkanoate + H2O = a 2-(omega-methylsulfanyl)alkylmalate + CoA + H+.
2-(2\'-methylthio)ethylmalate synthase activity
Binding to a thioglucosidase enzyme.
myrosinase binding
Binding to flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
flavin mononucleotide binding
Any process that activates or increases the frequency, rate or extent of cellular defense response.
activation of cellular defense response
positive regulation of cellular defence response
stimulation of cellular defense response
up regulation of cellular defense response
up-regulation of cellular defense response
upregulation of cellular defense response
Any process that stops, prevents, or reduces the frequency, rate or extent of seed germination.
down regulation of seed germination
down-regulation of seed germination
downregulation of seed germination
inhibition of seed germination
Formation of cytochrome b6f complex, a complex that transfers electrons from reduced plastoquinone to oxidized plastocyanin and translocates protons from the stroma to the lumen, by the aggregation, arrangement and bonding together of its constituents.
cytochrome b6f complex biogenesis
Synergid cells undergo degeneration and death in response to penetration by the pollen tube. It is an active process that involves a dramatic decrease in cell volume, collapse of the vacuoles, and complete disintegration of the plasma membrane and most organelles.
synergid cell death
synergid degeneration
The mechanism by which high light intensity inhibits photosynthesis through inactivation of the D1 protein of photosystem II.
photosystem II inhibition