NothingMuch/GO-Terms huggingface dataset:
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
response to far red light stimulus
The process that gives rise to secondary (or auxiliary or axillary) shoots in plants. This process pertains to the initial formation of a structure from unspecified parts. These secondary shoots originate from secondary meristems initiated in the axils of leaf primordia. Axillary meristems function like the shoot apical meristem of the primary shoot initiating the development of lateral organs.
auxiliary shoot formation
axillary shoot formation
axillary shoot system formation
shoot branching
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm.
response to medium wave ultraviolet light stimulus
response to medium wave ultraviolet radiation stimulus
response to UV-B light stimulus
response to UV-B radiation stimulus
response to UVB light stimulus
response to UVB radiation stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 280 nm.
response to germicidal ultraviolet light stimulus
response to germicidal ultraviolet radiation stimulus
response to shortwave ultraviolet light stimulus
response to shortwave ultraviolet radiation stimulus
response to UV-C light stimulus
response to UV-C radiation stimulus
response to UVC light stimulus
response to UVC radiation stimulus
The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.
floral evocation
flowering
transition from vegetative to reproductive phase
The process in which a change in the level of mono- and disaccharide glucose trigger the expression of genes controlling metabolic and developmental processes.
glucose mediated signalling
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endomembrane system.
endomembrane organization
endomembrane system organisation
The chemical reactions and pathways resulting in the formation of phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds.
myo-inositol hexakisphosphate anabolism
myo-inositol hexakisphosphate biosynthesis
myo-inositol hexakisphosphate formation
myo-inositol hexakisphosphate synthesis
phytate biosynthesis
phytate biosynthetic process
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus.
response to thiamin
response to thiamine
The aggregation, arrangement and bonding together of a set of components to form NAD(P)H dehydrogenase complex, which is involved in electron transport from an unidentified electron donor, possibly NAD(P)H or ferredoxin(Fd) to the plastoquinone pool.
NAD(P)H dehydrogenase complex (plastoquinone) assembly
Catalysis of the reaction: indole-3-acetic acid + an amino acid = an indole-3-acetic acid amide conjugate.
IAA amido synthetase activity
IAA amino acid conjugate synthetase activity
IAA amino acid synthetase activity
Any process that increases heat tolerance of an organism in response to high temperatures.
thermotolerance
Binding to a heteropolysaccharide, a glycan composed of more than one type of monosaccharide residue.
heteroglycan binding
The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II.
LHCII catabolism
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.
regulation of hydrogen peroxide metabolism
Heterodimeric complex that catalyzes the pyrophosphate-dependent phosphorylation of D-fructose 6-phosphate into D-fructose 1,6-bisphosphate.
PFK complex
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of isopentenyl diphosphate produced via the methylerythritol (MEP) pathway (mevalonate-independent).
regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
The infolding of a membrane.
single-organism membrane invagination
The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization).
raffinose family oligosaccharide biosynthesis
A large, multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the plant cell wall.
CESA complex
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum.
response to gamma ray
response to gamma-ray photon
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving salicylic acid.
regulation of salicylic acid metabolism
The process that gives rise to a shoot axis. This process pertains to the initial formation of a structure from unspecified parts.
shoot formation
The directed movement of lithium ion into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
lithium transport
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose stimulus.
response to trehalose stimulus
Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response.
regulation of HR
regulation of HR-PCD
regulation of plant hypersensitive response
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins.
regulation of gibberellic acid biosynthetic process
The chemical reactions and pathways involving cell wall peptidoglycan, a group of glycoproteins that consist of a core-protein backbone O-glycosylated by one or more complex carbohydrates.
cell wall proteoglycan metabolism
Any signaling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the mitotic cell cycle.
regulation of mitotic entry
The chemical reactions and pathways involving glucomannan, a polysaccharide composed of D-glucose and D-mannose. The mannose units form the backbone structure (a linear main chain) with the D-glucose as single side-units.
glucomannan metabolism
The chemical reactions and pathways involving galactoglucomannan, a polysaccharide composed of D-glucose, D-galactose and D-mannose. The mannose units form the backbone structure (a linear main chain) decorated with a mixture of D-glucose and D-galactose side-units.
galactoglucomannan metabolism
The chemical reactions and pathways involving galacturonan, a pectin polymer containing a backbone of alpha-(1->4)-linked D-galacturonic acid residues.
galacturonan metabolism
The chemical reactions and pathways involving homogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3.
homogalacturonan metabolism
The chemical reactions and pathways involving rhamnogalacturonan I (RGI), a branched pectin with a backbone of alternating alpha-(1->2)-linked rhamnose and alpha-(1->4)-linked D-galacturonic acid residues that carries neutral side-chains of predominantly beta-(1->4)-D-galactose and/or alpha-(1->5)-L-arabinose residues attached to the rhamnose residues of the RGI backbone.
RGI metabolism
rhamnogalacturonan I metabolism
The chemical reactions and pathways involving rhamnogalacturonan II, a low molecular mass (5-10KDa) pectic polysaccharide. The backbone of RG-II contains at least 8 1,4-linked alpha-D-GalpA residues.
rhamnogalacturonan II metabolism
The chemical reactions and pathways involving the side chains of the pectin, rhamnogalacturonan I.
rhamnogalacturonan I side chain metabolism
The chemical reactions and pathways involving a cell wall hydroxyproline-rich glycoprotein that consist of a core-protein backbone O-glycosylated by one or more complex carbohydrates.
cell wall hydroxyproline-rich glycoprotein metabolism
The chemical reactions and pathways involving a cell wall arabinogalactan II glycoprotein, which is composed of a group of core protein of highly varying length and domain complexity. These are O-glycosylated at one or more hydroxyproline residues by arabinogalactan (AG) type II groups, which consist of (1->3)-beta-galactan and (1->6)-beta-linked galactan chains connected to each other by (1->3,1->6)-linked branch points, O-3 and O-6 positions substituted with terminal arabinosyl residues. Also, rhamnose, fucose, glucuronic and galacturonic acid can be present in the glycan structures.
arabinogalactan protein metabolism
The chemical reactions and pathways involving hemicelluloses, plant cell wall polysaccharides that have a backbone of 1,4-linked beta-D-pyranosyl residues in which O4 is in the equatorial orientation. Many different hemicelluloses usually occur intermixed with each molecular type representing different degrees of polymerization and contain many different sugar monomers, which can include glucose, xylose, mannose, galactose, and arabinose. Hemicelluloses also contain most of the D-pentose sugars and occasionally small amounts of L-sugars as well. Xylose is always the sugar monomer present in the largest amount, but mannuronic acid and galacturonic acid also tend to be present.
hemicellulose metabolism
The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
xyloglucan metabolism
The chemical reactions and pathways involving mannan, a group of polysaccharides containing a backbone composed of a polymer of D-mannose units.
mannan metabolism
The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid side units.
glucuronoxylan metabolism
The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid and arabinose side units.
glucuronoarabinoxylan metabolism
The chemical reactions and pathways involving an arabinoxylan, a polymer containing a beta-1,4-linked D-xylose backbone decorated with arabinose side units.
arabinoxylan metabolic process
arabinoxylan metabolism
Programmed cell death induced by hydrogen peroxide. Programmed cell death is the cell death resulting from activation of endogenous cellular processes.
programmed cell death in response to hydrogen peroxide
Catalysis of the oxidative cleavage of carotenoids.
carotenoid-cleaving dioxygenase
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH > 7. pH is a measure of the acidity or basicity of an aqueous solution.
response to alkalinity
response to basic pH
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
response to acidity
The cell cycle transition where a cell leaves M phase and enters a new G1 phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place.
exit from mitotic division
mitotic exit
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA).
gene regulation
regulation of gene product expression
regulation of protein expression
Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.
regulation of receptor activity
regulation of signalling receptor activity
The series of molecular signals generated as a consequence of gibberellin stimulus.
gibberellin-mediated signalling
Any process resulting in the physical partitioning and separation of an epidermal cell, any of the cells making up the epidermis, into daughter cells.
hypodermal cell division
Catalysis of the reaction: acetyl-CoA + histone H3 = CoA + acetyl-histone H3.
H3 histone acetylase activity
H3 histone acetyltransferase activity
Catalysis of the reaction: acetyl-CoA + histone H4 = CoA + acetyl-histone H4.
H4 histone acetylase activity
H4 histone acetyltransferase activity
The movement of substances between cells.
single organism intercellular transport
single-organism intercellular transport
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
proteasome-mediated protein catabolic process
proteasome-mediated protein catabolism
Any process that decreases the frequency, rate or extent of transposable element expression. Includes both DNA transposons and retrotransposons.
negative regulation of transposition, RNA-mediated
retrotransposon silencing
The controlled breakdown of the thylakoid membrane in the context of a normal process.
thylakoid membrane degradation
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mannitol stimulus.
response to mannitol stimulus
Any process that activates or increases the frequency, rate or extent of the DNA-dependent DNA replication that occurs in the nucleus of eukaryotic organisms as part of the cell cycle.
positive regulation of DNA replication during S phase
positive regulation of DNA replication involved in S phase
positive regulation of DNA replication involved in S-phase
The appearance of vascular endothelial growth factor production due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
VEGF production
The chemical reactions and pathways involving miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression.
microRNA metabolic process
The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression.
microRNA catabolic process
Any process that modulates the rate, frequency or extent of the process of physically separating the septal cell wall material by enzymatic digestion, that occurs after daughter cells are separated by cytokinesis.
regulation of cell separation after cytokinesis
regulation of cell separation following cytokinesis
regulation of mitotic cytokinetic cell separation
Any process that modulates the rate, frequency or extent of the formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell.
regulation of lamellipodium biogenesis
Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript.
posttranscriptional regulation of gene expression
An adenylate cyclase-activating G protein-coupled receptor signaling pathway initiated by glucose binding to its receptor on the surface of the target cell, and ending with the regulation of a downstream cellular process.
activation of adenylate cyclase activity by glucose involved in G-protein signaling
activation of adenylate cyclase activity by glucose-triggered G-protein signaling pathway
activation of adenylate cyclase activity by glucose-triggered G-protein signalling pathway
glucose-sensing PKA pathway
The activation of endogenous cellular processes that result in the death of a cell as part of its development.
developmental programmed cell death
programmed cell death involved in development
Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA).
gene silencing
Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle.
positive regulation of organelle organisation
positive regulation of organelle organization and biogenesis
Any process that decreases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle.
negative regulation of organelle organisation
negative regulation of organelle organization and biogenesis
Any process that modulates the frequency, rate or extent of the platelet-derived growth factor receptor signaling pathway.
regulation of platelet-derived growth factor receptor signalling pathway
Any process that increases the frequency, rate or extent of the platelet-derived growth factor receptor signaling pathway.
positive regulation of platelet-derived growth factor receptor signalling pathway
Any process that stops, prevents, or reduces the frequency, rate or extent of the platelet-derived growth factor receptor signaling pathway.
negative regulation of platelet-derived growth factor receptor signalling pathway
Any process that decreases the rate or frequency of muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a muscle cell and result in its death.
negative regulation of muscle cell apoptosis
A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a muscle cell and result in its death. A muscle cell is a mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle.
muscle cell apoptosis
A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a striated muscle cell and result in its death. Striated muscle cells make up striated muscle fibers which are divided by transverse bands into striations.
striated muscle cell apoptosis
A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a cardiac muscle cell and result in its death. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.
cardiac muscle cell apoptosis
Any process that modulates the rate or frequency of muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a muscle cell and result in its death.
regulation of muscle cell apoptosis
Any process that increases the rate or frequency of muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a muscle cell and result in its death.
positive regulation of muscle cell apoptosis
Any process that modulates the rate or extent of striated muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a striated muscle cell and result in its death.
regulation of striated muscle cell apoptosis
Any process that increases the rate or extent of striated muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a striated muscle cell and result in its death.
positive regulation of striated muscle cell apoptosis
Any process that decreases the rate or extent of striated muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a striated muscle cell and result in its death.
down regulation of striated muscle cell apoptosis
down-regulation of striated muscle cell apoptosis
downregulation of striated muscle cell apoptosis
inhibition of striated muscle cell apoptosis
negative regulation of striated muscle cell apoptosis
Any process that modulates the rate or extent of cardiac cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a cardiac muscle cell and result in its death.
regulation of cardiac muscle cell apoptosis
The chemical reactions and pathways involving tricyclic triterpenoid compounds, terpenoids with six isoprene units and 3 rings.
tricyclic triterpenoid metabolism
The chemical reactions and pathways involving tetracyclic triterpenoid compounds, terpenoids with six isoprene units and 4 carbon rings.
tetracyclic triterpenoid metabolism
The chemical reactions and pathways resulting in the formation of tetracyclic triterpenoid compounds, terpenoids with six isoprene units and 4 carbon rings.
tetracyclic triterpenoid biosynthesis
Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes mediated by RNA polymerase II.
negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter
Any process that modulates the rate, frequency or extent of the process involving the release of duplicated mitotic spindle pole bodies (SPBs) and their migration away from each other within the nuclear membrane.
regulation of SPB separation