NothingMuch/GO-Terms huggingface dataset:
The inner, i.e. lumen-facing, lipid bilayer of the chloroplast envelope; also faces the chloroplast stroma.
chloroplast inner envelope
The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope.
chloroplast outer envelope
The chemical reactions and pathways resulting in the formation of benzyl isoquinoline alkaloids, compounds with bicyclic N-containing aromatic rings.
benzyl isoquinoline alkaloid anabolism
benzyl isoquinoline alkaloid biosynthesis
benzyl isoquinoline alkaloid formation
benzyl isoquinoline alkaloid synthesis
The chemical reactions and pathways resulting in the formation of terpenoid indole alkaloids, compounds formed from the condensation of tryptamine (derived from tryptophan) and secologanin (derived from geranyl pyrophosphate).
terpenoid indole alkaloid anabolism
terpenoid indole alkaloid biosynthesis
terpenoid indole alkaloid formation
terpenoid indole alkaloid synthesis
The chemical reactions and pathways resulting in the breakdown of tropane alkaloids, compounds containing the 8-methyl-8-azabicyclo(3.2.1)octane ring system.
tropane alkaloid anabolism
tropane alkaloid biosynthesis
tropane alkaloid formation
tropane alkaloid synthesis
The chemical reactions and pathways involving a compound containing a pyrocatechol (1,2-benzenediol) nucleus or substituent.
catechol metabolic process
catechol metabolism
The chemical reactions and pathways resulting in the formation of catechol-containing compounds. Catechol is a compound containing a pyrocatechol nucleus or substituent.
catechol anabolism
catechol biosynthesis
catechol biosynthetic process
catechol formation
catechol synthesis
The chemical reactions and pathways involving chalcones, phenyl steryl ketone or its hydroxylated derivatives.
chalcone metabolism
The chemical reactions and pathways resulting in the formation of isoflavonoids, a group of water-soluble phenolic derivatives, isomeric with flavonoids.
isoflavonoid anabolism
isoflavonoid biosynthesis
isoflavonoid formation
isoflavonoid synthesis
The chemical reactions and pathways resulting in the formation of anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins.
anthocyanin anabolism
anthocyanin biosynthesis
anthocyanin biosynthetic process
anthocyanin formation
anthocyanin synthesis
The series of events in which a hormone stimulus is received by a cell and converted into a molecular signal.
perception of hormone stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
response to ethene stimulus
response to ethylene stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.
growth regulator
response to hormone stimulus
The series of events in which a carbohydrate stimulus is received by a cell and converted into a molecular signal.
perception of carbohydrate stimulus
The series of events in which a stimulus from a hexose is received and converted into a molecular signal.
perception of hexose stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
response to auxin stimulus
The series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription.
auxin mediated signaling pathway
auxin mediated signalling
auxin signal transduction
auxin signaling
auxin-regulated transcription
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
response to cytokinin stimulus
The series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.
cytokinin mediated signaling pathway
cytokinin mediated signalling
cytokinin signaling
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
response to abscisic acid stimulus
The series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.
ABA signal transduction
ABA signaling
abscisic acid mediated signalling
abscisic acid signal transduction
abscisic acid-mediated signaling pathway
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
response to gibberellic acid stimulus
response to gibberellin stimulus
The series of molecular signals mediated by the detection of gibberellic acid.
GA-signaling
gibberellic acid mediated signalling
gibberellic acid signaling
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus.
response to brassinosteroid stimulus
The series of molecular signals mediated by the detection of brassinosteroid.
brassinosteroid mediated signalling
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus.
response to carbohydrate stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus.
response to sucrose stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus.
response to hexose stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
response to glucose stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus.
response to fructose stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
response to salicylate
response to salicylic acid stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
response to jasmonic acid stimulus
The series of molecular signals mediated by the detection of a hormone.
hormone mediated signalling
The series of molecular signals mediated by the detection of carbohydrate.
carbohydrate mediated signalling
The series of molecular signals mediated by the detection of hexose.
hexose mediated signalling
A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbohydrate sources,usually glucose, and then activates genes to scavenge the last traces of the primary carbohydrate source and to transport and metabolize alternate carbohydrate sources. The utilization process begins when the cell or organism detects carbohydrate levels, includes the activation of genes whose products detect, transport or metabolize carbohydrates, and ends when the carbohydrate is incorporated into the cell or organism's metabolism.
sugar utilization
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
energy dissipation
A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
electron carrier, chlorophyll electron transport system
photosynthetic electron transport in cytochrome b6/f
photosynthetic electron transport in plastocyanin
photosynthetic electron transport in plastoquinone
Any metabolic process in which photosynthetic organisms use light energy to convert ADP to ATP without the concomitant reduction of dioxygen (O2) to water that occurs in phosphorylation.
photosynthetic ATP synthesis
Any process that modulates the frequency, rate or extent of abscisic acid (ABA) signaling.
regulation of abscisic acid mediated signaling pathway
regulation of abscisic acid mediated signalling
The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
embryogenesis
embryogenesis and morphogenesis
embryonal development
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
embryogenesis
The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
embryogenesis
Any process that modulates the frequency, rate or extent of replication and segregation of genetic material in the embryo.
embryonic mitotic cell cycle modulation
embryonic mitotic cell cycle regulation
embryonic mitotic cell cycle regulator
modulation of embryonic mitotic cell cycle progression
regulation of embryonic mitotic cell cycle
regulation of embryonic mitotic cell cycle progression
regulation of progression through embryonic mitotic cell cycle
The establishment, maintenance and elaboration of a pattern along a line or around a point.
axis determination
The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created.
determination of symmetry
The chemical reactions and pathways involving ester derivatives of cinnamic acid, phenylpropenoic acid.
cinnamic acid ester metabolism
The chemical reactions and pathways resulting in the formation of ester derivatives of cinnamic acid, phenylpropenoic acid.
cinnamic acid ester anabolism
cinnamic acid ester biosynthesis
cinnamic acid ester formation
cinnamic acid ester synthesis
cinnamylic acid ester biosynthesis
cinnamylic acid ester biosynthetic process
phenylacrylic acid ester biosynthesis
phenylacrylic acid ester biosynthetic process
The chemical reactions and pathways involving cinnamic acid, 3-phenyl-2-propenoic acid.
cinnamic acid metabolism
cinnamylic acid metabolic process
cinnamylic acid metabolism
phenylacrylic acid metabolic process
phenylacrylic acid metabolism
phenylpropenoic acid metabolic process
phenylpropenoic acid metabolism
The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids.
coumarin metabolism
The chemical reactions and pathways resulting in the formation of coumarins, a class of compounds derived from the phenylacrylic skeleton of cinnamic acids.
coumarin anabolism
coumarin biosynthesis
coumarin formation
coumarin synthesis
The chemical reactions and pathways involving lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.
lignan metabolism
The chemical reactions and pathways resulting in the formation of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.
lignan anabolism
lignan biosynthesis
lignan formation
lignan synthesis
The chemical reactions and pathways involving lignins, a class of polymers of phenylpropanoid units.
lignin metabolism
The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
lignin anabolism
lignin biosynthesis
lignin formation
lignin synthesis
The chemical reactions and pathways involving stilbenes, a class of polyketides formed from a molecule of cinnamic acid and three molecules of malonyl-CoA.
stilbene metabolism
The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins.
flavonoid metabolism
The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.
flavonoid anabolism
flavonoid biosynthesis
flavonoid formation
flavonoid synthesis
The chemical reactions and pathways involving alkaloids, nitrogen containing natural products which are not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases).
alkaloid metabolism
The chemical reactions and pathways resulting in the formation of alkaloids, nitrogen-containing natural products which are not otherwise classified as nonprotein amino acids, amines, peptides, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones, or primary metabolite (such as purine or pyrimidine bases).
alkaloid anabolism
alkaloid biosynthesis
alkaloid formation
alkaloid synthesis
The chemical reactions and pathways resulting in the breakdown of alkaloids, nitrogen containing natural products not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases).
alkaloid breakdown
alkaloid catabolism
alkaloid degradation
The chemical reactions and pathways resulting in the breakdown of cytokinins, a class of adenine-derived compounds that can function in plants as plant growth regulators.
cytokinin breakdown
cytokinin catabolism
cytokinin degradation
The process in which a cell irreversibly increases in size in two or three  dimensions or along two or three axes.
cell growth in three dimensions
cell growth in two dimensions
The process in which a cell irreversibly increases in size in one  dimension or along one axis, resulting in the morphogenesis of the cell.
cell elongation
cell growth along one axis
cell growth in one dimension
cell morphogenesis by unidimensional growth
polar cell growth
polarized cell growth
The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana.
cellulose and pectin-containing cell wall modification
The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.
cellulose and pectin-containing cell wall loosening
A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission.
cell wall modification during abscission
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
cell wall anabolism
cell wall assembly
cell wall biosynthetic process
cell wall formation
cell wall synthesis
cellulose and pectin-containing cell wall biogenesis
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana.
cellulose and pectin-containing secondary cell wall biogenesis
secondary cell wall anabolism
secondary cell wall biogenesis
secondary cell wall biosynthetic process
secondary cell wall formation
secondary cell wall synthesis
An developmental maturation process that has as participant a fruit. Ripening causes changes in one or more characteristics of a fruit (color, aroma, flavor, texture, hardness, cell wall structure) and may make it more attractive to animals and aid in seed dispersal.
fruit maturation
fruit senescence
A plastid that contains unstacked, phycobilisome-bearing thylakoid membranes and is surrounded by a double membrane with a peptidoglycan layer in the intermembrane space between the two envelope membranes. Cyanelles are characteristic of algae in the class Glaucophyta, and may represent an ancestral form of plastid.
cyanoplast
muroplast
The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
spore germination on or near host
The chemical reactions and pathways resulting in the formation of indole-3-acetic acid that occurs through metabolism of L-tryptophan.
IAA biosynthetic process via tryptophan
indoleacetic acid anabolism via tryptophan
indoleacetic acid formation via tryptophan
indoleacetic acid synthesis via tryptophan
The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth.
auxin metabolism
The chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth.
auxin anabolism
auxin biosynthesis
auxin formation
auxin synthesis
The chemical reactions and pathways resulting in the breakdown of auxins, a group of plant hormones that regulate aspects of plant growth.
auxin breakdown
auxin catabolism
auxin degradation
A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
photorespiratory pathway
The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry.
determination of bilateral asymmetry
The jasmonic acid and ethylene (ethene) dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen.
jasmonic acid and ethene-dependent systemic resistance
jasmonic acid/ethylene-dependent systemic resistance
The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.
salicylic acid mediated signaling pathway (systemic acquired resistance)
systemic acquired resistance, salicylic acid mediated signalling pathway
The series of molecular signals mediated by salicylic acid.
salicylic acid mediated signal transduction
salicylic acid mediated signalling pathway
salicylic acid-mediated signaling pathway
The series of molecular signals mediated by jasmonic acid.
JA signaling
jasmonate signaling
jasmonic acid mediated signalling pathway
The series of molecular signals generated by the reception of ethylene (ethene, C2H4) by a receptor and ending with modulation of a cellular process, e.g. transcription.
ethene mediated signaling pathway
ethene mediated signalling pathway
ethylene mediated signaling pathway
ethylene mediated signalling pathway
ethylene signal transduction
ethylene signaling pathway
The interaction between a pollen grain and pistil.
pollen-gynoecium interaction
The process that results in the patterns of cell differentiation that will arise in an embryo.
embryonic pattern biosynthesis
embryonic pattern formation
ventral/lateral system
The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation.
blue-sensitive opsin
green-sensitive opsin
long-wave-sensitive opsin
opsin
red-sensitive opsin
short-wave-sensitive opsin
UV-sensitive opsin
violet-sensitive opsin
The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 660-730nm. The response may involve a change in conformation.
red/far-red light photoreceptor activity
The process, occurring after animal embryonic development, by which anatomical structures are generated and organized.
post-embryonic morphogenesis of an anatomical structure
Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
histogenesis and organogenesis
The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
histogenesis
histogenesis and organogenesis
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances.
regulation of anabolism
regulation of biosynthesis
regulation of formation
regulation of synthesis
Any process that stops, prevents, or reduces the rate of the chemical reactions and pathways resulting in the formation of substances.
down regulation of biosynthetic process
down-regulation of biosynthetic process
downregulation of biosynthetic process
inhibition of biosynthetic process
negative regulation of anabolism
negative regulation of biosynthesis
negative regulation of formation
negative regulation of synthesis
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances.
activation of biosynthetic process
positive regulation of anabolism
positive regulation of biosynthesis
positive regulation of formation
positive regulation of synthesis
stimulation of biosynthetic process
up regulation of biosynthetic process
up-regulation of biosynthetic process
upregulation of biosynthetic process