Miracle-dz/UniFAR-FTUs huggingface dataset:
Towards a unified approach to formal risk of bias assessments for causal and descriptive inference

Statistics is sometimes described as the science of reasoning under uncertainty. Statistical models provide one view of this uncertainty, but what is frequently neglected is the invisible portion of uncertainty: that assumed not to exist once a model has been fitted to some data. Systematic errors, i.e. bias, in data relative to some model and inferential goal can seriously undermine research conclusions, and qualitative and quantitative techniques have been created across several disciplines to quantify and generally appraise such potential biases. Perhaps best known are so-called risk of bias assessment instruments used to investigate the likely quality of randomised controlled trials in medical research. However, the logic of assessing the risks caused by various types of systematic error to statistical arguments applies far more widely. This logic applies even when statistical adjustment strategies for potential biases are used, as these frequently make assumptions (e.g. data missing at random) that can never be guaranteed in finite samples. Mounting concern about such situations can be seen in the increasing calls for greater consideration of biases caused by nonprobability sampling in descriptive inference (i.e. survey sampling), and the statistical generalisability of in-sample causal effect estimates in causal inference; both of which relate to the consideration of model-based and wider uncertainty when presenting research conclusions from models. Given that model-based adjustments are never perfect, we argue that qualitative risk of bias reporting frameworks for both descriptive and causal inferential arguments should be further developed and made mandatory by journals and funders. It is only through clear statements of the limits to statistical arguments that consumers of research can fully judge their value for any specific application.
PCMC-T1: Free-breathing myocardial T1 mapping with Physically-Constrained Motion Correction

T1 mapping is a quantitative magnetic resonance imaging (qMRI) technique that has emerged as a valuable tool in the diagnosis of diffuse myocardial diseases. However, prevailing approaches have relied heavily on breath-hold sequences to eliminate respiratory motion artifacts. This limitation hinders accessibility and effectiveness for patients who cannot tolerate breath-holding. Image registration can be used to enable free-breathing T1 mapping. Yet, inherent intensity differences between the different time points make the registration task challenging. We introduce PCMC-T1, a physically-constrained deep-learning model for motion correction in free-breathing T1 mapping. We incorporate the signal decay model into the network architecture to encourage physically-plausible deformations along the longitudinal relaxation axis. We compared PCMC-T1 to baseline deep-learning-based image registration approaches using a 5-fold experimental setup on a publicly available dataset of 210 patients. PCMC-T1 demonstrated superior model fitting quality (R2: 0.955) and achieved the highest clinical impact (clinical score: 3.93) compared to baseline methods (0.941, 0.946 and 3.34, 3.62 respectively). Anatomical alignment results were comparable (Dice score: 0.9835 vs. 0.984, 0.988). Our code and trained models are available at https://github.com/eyalhana/PCMC-T1.
Aspect-oriented Opinion Alignment Network for Aspect-Based Sentiment Classification

Aspect-based sentiment classification is a crucial problem in fine-grained sentiment analysis, which aims to predict the sentiment polarity of the given aspect according to its context. Previous works have made remarkable progress in leveraging attention mechanism to extract opinion words for different aspects. However, a persistent challenge is the effective management of semantic mismatches, which stem from attention mechanisms that fall short in adequately aligning opinions words with their corresponding aspect in multi-aspect sentences. To address this issue, we propose a novel Aspect-oriented Opinion Alignment Network (AOAN) to capture the contextual association between opinion words and the corresponding aspect. Specifically, we first introduce a neighboring span enhanced module which highlights various compositions of neighboring words and given aspects. In addition, we design a multi-perspective attention mechanism that align relevant opinion information with respect to the given aspect. Extensive experiments on three benchmark datasets demonstrate that our model achieves state-of-the-art results. The source code is available at https://github.com/AONE-NLP/ABSA-AOAN.
Lax Matrices&Clusters for Type A&C Q-Deformed Open Toda Chain

At the turn of the century, Etingof and Sevostyanov independently constructed a family of quantum integrable systems, quantizing the open Toda chain associated to a simple Lie group $G$. The elements of this family are parameterized by Coxeter words of the corresponding Weyl group. Twenty years later, in the works of Finkelberg, Gonin, and Tsymbaliuk, this was generalized to a family of quantum Toda chains parameterized by pairs of Coxeter words. In this paper, we show that this family is actually a single cluster integrable system written in different clusters associated to cyclic double Coxeter words. Furthermore, if we restrict the action of Hamiltonians to its positive representation, these systems become unitary equivalent.
Vision-Based Intelligent Robot Grasping Using Sparse Neural Network

In the modern era of Deep Learning, network parameters play a vital role in models efficiency but it has its own limitations like extensive computations and memory requirements, which may not be suitable for real time intelligent robot grasping tasks. Current research focuses on how the model efficiency can be maintained by introducing sparsity but without compromising accuracy of the model in the robot grasping domain. More specifically, in this research two light-weighted neural networks have been introduced, namely Sparse-GRConvNet and Sparse-GINNet, which leverage sparsity in the robotic grasping domain for grasp pose generation by integrating the Edge-PopUp algorithm. This algorithm facilitates the identification of the top K% of edges by considering their respective score values. Both the Sparse-GRConvNet and Sparse-GINNet models are designed to generate high-quality grasp poses in real-time at every pixel location, enabling robots to effectively manipulate unfamiliar objects. We extensively trained our models using two benchmark datasets: Cornell Grasping Dataset (CGD) and Jacquard Grasping Dataset (JGD). Both Sparse-GRConvNet and Sparse-GINNet models outperform the current state-of-the-art methods in terms of performance, achieving an impressive accuracy of 97.75% with only 10% of the weight of GR-ConvNet and 50% of the weight of GI-NNet, respectively, on CGD. Additionally, Sparse-GRConvNet achieve an accuracy of 85.77% with 30% of the weight of GR-ConvNet and Sparse-GINNet achieve an accuracy of 81.11% with 10% of the weight of GI-NNet on JGD. To validate the performance of our proposed models, we conducted extensive experiments using the Anukul (Baxter) hardware cobot.
Harmonization Across Imaging Locations(HAIL): One-Shot Learning for Brain MRI

For machine learning-based prognosis and diagnosis of rare diseases, such as pediatric brain tumors, it is necessary to gather medical imaging data from multiple clinical sites that may use different devices and protocols. Deep learning-driven harmonization of radiologic images relies on generative adversarial networks (GANs). However, GANs notoriously generate pseudo structures that do not exist in the original training data, a phenomenon known as"hallucination". To prevent hallucination in medical imaging, such as magnetic resonance images (MRI) of the brain, we propose a one-shot learning method where we utilize neural style transfer for harmonization. At test time, the method uses one image from a clinical site to generate an image that matches the intensity scale of the collaborating sites. Our approach combines learning a feature extractor, neural style transfer, and adaptive instance normalization. We further propose a novel strategy to evaluate the effectiveness of image harmonization approaches with evaluation metrics that both measure image style harmonization and assess the preservation of anatomical structures. Experimental results demonstrate the effectiveness of our method in preserving patient anatomy while adjusting the image intensities to a new clinical site. Our general harmonization model can be used on unseen data from new sites, making it a valuable tool for real-world medical applications and clinical trials.
Deep Semi-supervised Anomaly Detection with Metapath-based Context Knowledge

Graph anomaly detection has attracted considerable attention in recent years. This paper introduces a novel approach that leverages metapath-based semi-supervised learning, addressing the limitations of previous methods. We present a new framework, Metapath-based Semi-supervised Anomaly Detection (MSAD), incorporating GCN layers in both the encoder and decoder to efficiently propagate context information between abnormal and normal nodes. The design of metapath-based context information and a specifically crafted anomaly community enhance the process of learning differences in structures and attributes, both globally and locally. Through a comprehensive set of experiments conducted on seven real-world networks, this paper demonstrates the superiority of the MSAD method compared to state-of-the-art techniques. The promising results of this study pave the way for future investigations, focusing on the optimization and analysis of metapath patterns to further enhance the effectiveness of anomaly detection on attributed networks.
SDeMorph: Towards Better Facial De-morphing from Single Morph

Face Recognition Systems (FRS) are vulnerable to morph attacks. A face morph is created by combining multiple identities with the intention to fool FRS and making it match the morph with multiple identities. Current Morph Attack Detection (MAD) can detect the morph but are unable to recover the identities used to create the morph with satisfactory outcomes. Existing work in de-morphing is mostly reference-based, i.e. they require the availability of one identity to recover the other. Sudipta et al. [9] proposed a reference-free de-morphing technique but the visual realism of outputs produced were feeble. In this work, we propose SDeMorph (Stably Diffused De-morpher), a novel de-morphing method that is reference-free and recovers the identities of bona fides. Our method produces feature-rich outputs that are of significantly high quality in terms of definition and facial fidelity. Our method utilizes Denoising Diffusion Probabilistic Models (DDPM) by destroying the input morphed signal and then reconstructing it back using a branched-UNet. Experiments on ASML, FRLL-FaceMorph, FRLL-MorDIFF, and SMDD datasets support the effectiveness of the proposed method.
A Survey on Self-Supervised Representation Learning

Learning meaningful representations is at the heart of many tasks in the field of modern machine learning. Recently, a lot of methods were introduced that allow learning of image representations without supervision. These representations can then be used in downstream tasks like classification or object detection. The quality of these representations is close to supervised learning, while no labeled images are needed. This survey paper provides a comprehensive review of these methods in a unified notation, points out similarities and differences of these methods, and proposes a taxonomy which sets these methods in relation to each other. Furthermore, our survey summarizes the most-recent experimental results reported in the literature in form of a meta-study. Our survey is intended as a starting point for researchers and practitioners who want to dive into the field of representation learning.
Protect Federated Learning Against Backdoor Attacks via Data-Free Trigger Generation

As a distributed machine learning paradigm, Federated Learning (FL) enables large-scale clients to collaboratively train a model without sharing their raw data. However, due to the lack of data auditing for untrusted clients, FL is vulnerable to poisoning attacks, especially backdoor attacks. By using poisoned data for local training or directly changing the model parameters, attackers can easily inject backdoors into the model, which can trigger the model to make misclassification of targeted patterns in images. To address these issues, we propose a novel data-free trigger-generation-based defense approach based on the two characteristics of backdoor attacks: i) triggers are learned faster than normal knowledge, and ii) trigger patterns have a greater effect on image classification than normal class patterns. Our approach generates the images with newly learned knowledge by identifying the differences between the old and new global models, and filters trigger images by evaluating the effect of these generated images. By using these trigger images, our approach eliminates poisoned models to ensure the updated global model is benign. Comprehensive experiments demonstrate that our approach can defend against almost all the existing types of backdoor attacks and outperform all the seven state-of-the-art defense methods with both IID and non-IID scenarios. Especially, our approach can successfully defend against the backdoor attack even when 80\% of the clients are malicious.
Radiative Magnetohydrodynamic Simulation of the Confined Eruption of a Magnetic Flux Rope: Unveiling the Driving and Constraining Forces

We analyze the forces that control the dynamic evolution of a flux rope eruption in a three-dimensional radiative magnetohydrodynamic simulation. The confined eruption of the flux rope gives rise to a C8.5 flare. The flux rope rises slowly with an almost constant velocity of a few kilometers per second in the early stage when the gravity and Lorentz force are nearly counterbalanced. After the flux rope rises to the height at which the decay index of the external poloidal field satisfies the torus instability criterion, the significantly enhanced Lorentz force breaks the force balance and drives the rapid acceleration of the flux rope. Fast magnetic reconnection is immediately induced within the current sheet under the erupting flux rope, which provides strong positive feedback to the eruption. The eruption is eventually confined due to the tension force from the strong external toroidal field. Our results suggest that the gravity of plasma plays an important role in sustaining the quasi-static evolution of the preeruptive flux rope. The Lorentz force, which is contributed from both the ideal magnetohydrodynamic instability and magnetic reconnection, dominates the dynamic evolution during the eruption process.
EndoNet: model for automatic calculation of H-score on histological slides

H-score is a semi-quantitative method used to assess the presence and distribution of proteins in tissue samples by combining the intensity of staining and percentage of stained nuclei. It is widely used but time-consuming and can be limited in accuracy and precision. Computer-aided methods may help overcome these limitations and improve the efficiency of pathologists' workflows. In this work, we developed a model EndoNet for automatic calculation of H-score on histological slides. Our proposed method uses neural networks and consists of two main parts. The first is a detection model which predicts keypoints of centers of nuclei. The second is a H-score module which calculates the value of the H-score using mean pixel values of predicted keypoints. Our model was trained and validated on 1780 annotated tiles with a shape of 100x100 $\mu m$ and performed 0.77 mAP on a test dataset. Moreover, the model can be adjusted to a specific specialist or whole laboratory to reproduce the manner of calculating the H-score. Thus, EndoNet is effective and robust in the analysis of histology slides, which can improve and significantly accelerate the work of pathologists.
Semantic Multi-Resolution Communications

Deep learning based joint source-channel coding (JSCC) has demonstrated significant advancements in data reconstruction compared to separate source-channel coding (SSCC). This superiority arises from the suboptimality of SSCC when dealing with finite block-length data. Moreover, SSCC falls short in reconstructing data in a multi-user and/or multi-resolution fashion, as it only tries to satisfy the worst channel and/or the highest quality data. To overcome these limitations, we propose a novel deep learning multi-resolution JSCC framework inspired by the concept of multi-task learning (MTL). This proposed framework excels at encoding data for different resolutions through hierarchical layers and effectively decodes it by leveraging both current and past layers of encoded data. Moreover, this framework holds great potential for semantic communication’ where the objective extends beyond data reconstruction to preserving specific semantic attributes throughout the communication process. These semantic features could be crucial elements such as class labels, essential for classification tasks, or other key attributes that require preservation. Within this framework, each level of encoded data can be carefully designed to retain specific data semantics. As a result, the precision of a semantic classifier can be progressively enhanced across successive layers, emphasizing the preservation of targeted semantics throughout the encoding and decoding stages. We conduct experiments on MNIST and CIFAR10 dataset. The experiment with both datasets illustrates that our proposed method is capable of surpassing the SSCC method in reconstructing data with different resolutions, enabling the extraction of semantic features with heightened confidence in successive layers. This capability is particularly advantageous for prioritizing and preserving more crucial semantic features within the datasets.
BundleSeg: A versatile, reliable and reproducible approach to white matter bundle segmentation

This work presents BundleSeg, a reliable, reproducible, and fast method for extracting white matter pathways. The proposed method combines an iterative registration procedure with a recently developed precise streamline search algorithm that enables efficient segmentation of streamlines without the need for tractogram clustering or simplifying assumptions. We show that BundleSeg achieves improved repeatability and reproducibility than state-of-the-art segmentation methods, with significant speed improvements. The enhanced precision and reduced variability in extracting white matter connections offer a valuable tool for neuroinformatic studies, increasing the sensitivity and specificity of tractography-based studies of white matter pathways.
Effective interactions for the SM fermion mass hierarchy and their possible UV realization

We built an extended 2HDM theory with a spontaneously broken $U(1) _{X}$ global symmetry, where the tree level Universal Seesaw Mechanism generates the mass hierarchy of the Standard Model charged fermions and the Zee-Babu mechanism produces tiny active neutrino masses. The third family of SM charged fermions gets tree level masses from Yukawa interactions involving the Higgs doublets $H_1$ (for the top quark) and $H_2$ (for the bottom quark and tau lepton). The model under consideration is consistent with SM fermion masses and mixings, with the muon and electron $g-2$ anomalies and successfully accommodates the constraints arising from charged lepton flavor violation and meson oscillations. The proposed model predicts rates for charged lepton flavor violating decays within the reach of forthcoming experiments.
Sulfate Deposits Identified by OMEGA in Melas Chasma

Introduction: OMEGA, the VIS/NIR imaging spectrometer is onboard ESA/Mars Express spacecraft. Since one year, OMEGA has acquired many strips covering Valles Marineris. Melas Chasma, the central part of Valles Marineris is completely covered by OMEGA observations at low resolution with in addition some high resolution spots. The mineralogical informations given by OMEGA data are crucial to understand this complex area. Indeed, Melas Chasma displays many complex sedimentary landforms like interior layered deposits whose origin is not yet a consensus [1,2,3,4,5]. The main point of the debate is the role of water in the formation or the erosion of the ILD. Here, we report the geological study of Melas Chasma mineralogy issue from OMEGA data. Especially, sulfates have been detected from OMEGA data set in Melas Chasma. Here, we study their distribution. The mineralogy determined from OMEGA data provides new insights into the sedimentary history in Valles Marineris.
PMVC: Data Augmentation-Based Prosody Modeling for Expressive Voice Conversion

Voice conversion as the style transfer task applied to speech, refers to converting one person's speech into a new speech that sounds like another person's. Up to now, there has been a lot of research devoted to better implementation of VC tasks. However, a good voice conversion model should not only match the timbre information of the target speaker, but also expressive information such as prosody, pace, pause, etc. In this context, prosody modeling is crucial for achieving expressive voice conversion that sounds natural and convincing. Unfortunately, prosody modeling is important but challenging, especially without text transcriptions. In this paper, we firstly propose a novel voice conversion framework named 'PMVC', which effectively separates and models the content, timbre, and prosodic information from the speech without text transcriptions. Specially, we introduce a new speech augmentation algorithm for robust prosody extraction. And building upon this, mask and predict mechanism is applied in the disentanglement of prosody and content information. The experimental results on the AIShell-3 corpus supports our improvement of naturalness and similarity of converted speech.
Non-Redundant Combination of Hand-Crafted and Deep Learning Radiomics: Application to the Early Detection of Pancreatic Cancer

We address the problem of learning Deep Learning Radiomics (DLR) that are not redundant with Hand-Crafted Radiomics (HCR). To do so, we extract DLR features using a VAE while enforcing their independence with HCR features by minimizing their mutual information. The resulting DLR features can be combined with hand-crafted ones and leveraged by a classifier to predict early markers of cancer. We illustrate our method on four early markers of pancreatic cancer and validate it on a large independent test set. Our results highlight the value of combining non-redundant DLR and HCR features, as evidenced by an improvement in the Area Under the Curve compared to baseline methods that do not address redundancy or solely rely on HCR features.