Miracle-dz/UniFAR-FTUs huggingface dataset:
The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1

Antisense RNAs (asRNAs) are present in diverse organisms and play important roles in gene regulation. In this work, we mapped the primary antisense transcriptome in the halophilic archaeon Halobacterium salinarum NRC-1. By reanalyzing publicly available data, we mapped antisense transcription start sites (aTSSs) and inferred the probable 3′ ends of these transcripts. We analyzed the resulting asRNAs according to the size, location, function of genes on the opposite strand, expression levels and conservation. We show that at least 21% of the genes contain asRNAs in H. salinarum. Most of these asRNAs are expressed at low levels. They are located antisense to genes related to distinctive characteristics of H. salinarum, such as bacteriorhodopsin, gas vesicles, transposases and other important biological processes such as translation. We provide evidence to support asRNAs in type II toxin–antitoxin systems in archaea. We also analyzed public Ribosome profiling (Ribo-seq) data and found that ~10% of the asRNAs are ribosome-associated non-coding RNAs (rancRNAs), with asRNAs from transposases overrepresented. Using a comparative transcriptomics approach, we found that ~19% of the asRNAs annotated in H. salinarum belong to genes with an ortholog in Haloferax volcanii, in which an aTSS could be identified with positional equivalence. This shows that most asRNAs are not conserved between these halophilic archaea.
Influence of the PLGA/gelatin ratio on the physical, chemical and biological properties of electrospun scaffolds for wound dressings

Chronic wounds are a global health problem, and their treatments are difficult and long lasting. The development of medical devices through tissue engineering has been conducted to heal this type of wound. In this study, it was demonstrated that the combination of natural and synthetic polymers, such as poly (D-L lactide-co-glycolide) (PLGA) and gelatin (Ge), were useful for constructing scaffolds for wound healing. The aim of this study was to evaluate the influence of different PLGA/gelatin ratios (9:1, 7:3 and 5:5 (v/v)) on the physical, chemical and biological properties of electrospun scaffolds for wound dressings. These PLGA/Ge scaffolds had randomly oriented fibers with smooth surfaces and exhibited distances between fibers of less than 10 μm. The 7:3 and 5:5 PLGA/Ge scaffolds showed higher swelling, hydrophilicity and degradation rates than pure PLGA and 9:1 (v/v) PLGA/Ge scaffolds. Young’s moduli of the scaffolds were 72 ± 10, 48 ± 6, 58 ± 6 and 6 ± 1 MPa for the pure PLGA scaffold and the 9:1, 7:3 and 5:5 (v/v) PLGA/Ge scaffolds, respectively. Mesenchymal stem cells (MSCs) seeded on all the PLGA/Ge scaffolds were viable, and the cells were attached to the fibers at the different analyzed timepoints. The most significant proliferation rate was observed for cells on the 7:3 PLGA/Ge scaffolds. Biocompatibility analysis showed that all the scaffolds produced inflammation at the first week postimplantation; however, the 7:3 and 5:5 (v/v) PLGA/Ge scaffolds were degraded completely, and there was no inflammatory reaction observed at the fourth week after implantation. In contrast, the 9:1 PLGA/Ge scaffolds persisted in the tissue for more than four weeks; however, at the eighth week, no traces of the scaffolds were found. In conclusion, the scaffolds with the 7:3 PLGA/Ge ratio showed suitable physical, chemical and biological properties for applications in chronic wound treatments.
Cherry Gel Supplementation Does Not Attenuate Subjective Muscle Soreness or Alter Wellbeing Following a Match in a Team of Professional Rugby Union players: A Pilot Study

This study examined the effects of sour tart cherry juice (TC) on muscle soreness (MS) and wellbeing following a rugby union match in professional players. In a crossover design, 10 players from a senior squad in the top tier of England consumed either 2 × 30 mL servings of TC or an isocaloric cherry-flavoured control gel (CON) two days before, the day of, and two days following an 80 min match. Subjective wellbeing and MS were measured before the match (Pre), and for three days following the match (M+1, M+2, and M+3, respectively). MS was elevated from Pre at M+1 (CON, 111 ± 37 mm vs. TC 94 ± 41 mm) and M+2 (CON, 81 ± 35 mm vs. TC 72 ± 36 mm) (time effect; p = 0.0001; ηp2 = 0.821) but there were no differences between TC and CON at either time point post-exercise (p = 0.807; ηp2 = 0.035). Wellness scores were ~15% lower at M+1 (p = 0.023; ηp2 = 0.638) but there were no differences between the two conditions at any time point (p = 0.647; ηp2 = 0.160). In conclusion, tart cherry juice did not attenuate soreness or alter wellbeing in a team of professional rugby union players following a competitive match.
Durability of Basalt/Hemp Hybrid Thermoplastic Composites

The Achilles heel of thermoplastic natural fibre composites is their limited durability. The environmental degradation of the mechanical properties of hemp and hemp/basalt hybrid-reinforced high-density polyethylene (HDPE) composites has been investigated with a special focus on the effects of water ageing and accelerated ageing, including hygrothermal and UV radiation. Modification of the matrix was carried out using a maleic anhydride high-density polyethylene copolymer (MAPE) as a compatibilizer. Hybridization of hemp fibres with basalt fibres and the incorporation of MAPE were found to significantly decrease the water uptake (up to 75%) and increase the retention of mechanical properties after accelerated ageing. Secondary crystallization phenomena occurring in the composites, as confirmed by differential scanning calorimetry (DSC) analysis, were able to counteract the severe combined effects of hygrothermal stress and UV radiation, with the exception of hemp-fibre composites where permanent damage to the fibres occurred, with 2% and 20% reduction in tensile strength and modulus, respectively, for a 30 wt % hemp fibre-reinforced HDPE.
A Pesca Industrial de Emalhe de Fundo em Santa Catarina-Brasil: Dinâmica, Tecnologia, Economia e Gestão

The gillnet fishery is a passive gear used to catch fish and crustacean species. Among the industrial fleet within the State of Santa Catarina which applies this technique, the main target-species are demersal fishes such as monkfish, whitemouth croaker and argentine croaker. The current work presents a study focused on the dynamic, economical and technological aspects of the different gillnet fisheries on the 2000 decade providing substantial information for the development of a management plan of that activity. The analyzed data were provided by the Industrial Fisheries Statistics Program of Santa Catarina for years 2001 to 2008. These data included production reports, log books and questionnaires totalizing 7.021 fishing trips, and information collected during both Scientific and Boarding Observer Programs for the studied fleet. The distinct fisheries were identified through cluster and MDS analysis. Their respective target-species and incidental catch were identified using the methodology developed by Biseau. Only then the total captures and effort were distributed at a statistical grid of 30 x30 of resolution. From the results the technological specifications of the net could be reproduced. A total of 5 distinct gillnet fisheries were conducted by 1 foreign and 4 national fleets. The former captured monkfish (Lophius gastrophysus) and operated mostly on the offshore continental shelf and slope. The national fleet concentrated effort in fishing whitemouth croaker (Micropogonias furnieri) on the inner continental shelf using mesh sizes of 130 mm. Its economical viability was found to be positive. Also, the argentine croaker (Umbrina canosai) fishery was classified as second in number of vessels and fish trips and occurred on both offshore and shallow continental shelf using mesh sizes of 100 mm. The fisheries on the slope captured mainly monkfish and gulf-hake (Urophysis mystacea). The monkfish fishery was adapted to match the foreign fleet specifications using 280 mm of mesh size. Its economical viability was found to be positive. The gulf-hake fishery used 110 mm of mesh size and also had positive economical viability. In spite of the relevance and differences between the various industrial gillnet fisheries existent in the State of Santa Catarina, there are no specific legislation separating them, as well as, an unclear distinction between driftnet and gillnet operations
Influence of Polycarboxylate Superplasticizers with Different Functional Units on the Early Hydration of C3A-Gypsum

Influence of polycarboxylate superplasticizers (PCs) with different functional units on the hydration heat and hydration products of C3A-gypsum was investigated. Three kinds of PCs with different monomers were discussed. It was seen that PCs mainly shortened the induction stage of C3A-gypsum hydration, and the amount of remaining gypsum was related to the duration of the induction stage. The second heat flow peak of the sample with PCs was higher than that of the blank. Moreover, PC intercalation occurred during the hydration.
Reported needs of information resources, research tools, connectivity and infrastructure among African Pharmacological Scientists to improve future patient care and health

ABSTRACT Introduction: The potentials of Africa for growth and economic transformation through science remains challenging because of existing gaps in knowledge and infrastructure. The Africa Pharmacological Science Gateway project and the Medicines Utilization Research in Africa Group seek to meet the research needs of African pharmacologists. This study aimed at identifying priority needs that might be met by access to information and tools through e-infrastructure. Methods: A web-based cross-sectional study among 472 members of pharmacological societies in Africa to obtain information on their research interests and skills, available resources, needs, and knowledge gaps. Descriptive analyses were done. Results: A total of 118 responses from 13 countries were received, mostly from Nigeria (48.3%) and South Africa (21.3%). Respondents had wide ranges of research interests predominantly in drug utilization research. The desired resources included drug utilization research training and tools, pharmacokinetics and pharmacometrics modeling training and tools, drug–drug interaction and medicine prices resources, statistical analysis resources, access to journals, training in specific laboratory techniques, equipment and funding for research-related activities. Conclusions: Key areas of needs not currently provided by the African Pharmacological Science Gateway e-infrastructure were identified to guide the further provision of resources on the e-infrastructure and potentially enhance research capacity within the continent.
Influences of Stored Product Insect Movements on Integrated Pest Management Decisions

Insect movement inside and outside grain bulks and processed products influences pest management decisions. Movement allows insects to find essential food resources, shelters (refuges), warmer and/or humid locations, mating and egg-laying sites, even when they are rare in fields, buildings, mills, warehouses, and inside grain masses. This review discussed the advantages and disadvantages of stored product insect movements, and the influence of insect mobility on some integrated pest management practices. Insect movement (1) results in clumped insect spatial distributions and thus makes large sample sizes necessary for monitoring; (2) makes trapping more efficient, but is influenced by many factors; (3) allows control methods to be effective, but requires pest management programs to be area-wide; (4) makes eradication of quarantine pests difficult and commodities are quickly re-infested; and (5) results in a diverse genetic pool and speeds the development of resistance to pesticides. Any element of an IPM approach should use the knowledge of insect movement. Reasons for the difficult interpretation of cryptic movement behaviours of insects were provided and future research areas were suggested.
Effects of Calcium and Manganese on Sporulation of Bacillus Species Involved in Food Poisoning and Spoilage

Spores are resistant against many extreme conditions including the disinfection and sterilization methods used in the food industry. Selective prevention of sporulation of Bacillus species is an ongoing challenge for food scientists and fermentation technologists. This study was conducted to evaluate the effects of single and combined supplementation of calcium and manganese on sporulation of common pathogenic and food spoilage Bacillus species: B. cereus, B. licheniformis, B. subtilis and B. coagulans. Sporulation of Bacillus vegetative cells was induced on sporulation media supplemented with diverse concentrations of the minerals. Under the various mineral supplementation conditions, the degree of sporulation was quantified with colonies formed by the Bacillus spores. The results revealed that B. licheniformis and B. cereus displayed the weakest sporulation capabilities on media with minimal supplementation levels of calcium and manganese. The lowest sporulation of B. subtilis and B. coagulans was observed on media supplemented with the highest level of calcium and low levels of manganese. Depending on effect of supplementation on sporulation, the Bacillus species were divided into two distinct groups: B. licheniformis and B. cereus; and B. subtilis and B. coagulans. The information provides valuable insight to selectively reduce sporulation of Bacillus species undesirable in the food industry.
A Smart Context-Aware Hazard Attention System to Help People with Peripheral Vision Loss

Peripheral vision loss results in the inability to detect objects in the peripheral visual field which affects the ability to evaluate and avoid potential hazards. A different number of assistive navigation systems have been developed to help people with vision impairments using wearable and portable devices. Most of these systems are designed to search for obstacles and provide safe navigation paths for visually impaired people without any prioritisation of the degree of danger for each hazard. This paper presents a new context-aware hybrid (indoor/outdoor) hazard classification assistive technology to help people with peripheral vision loss in their navigation using computer-enabled smart glasses equipped with a wide-angle camera. Our proposed system augments users’ existing healthy vision with suitable, meaningful and smart notifications to attract the user’s attention to possible obstructions or hazards in their peripheral field of view. A deep learning object detector is implemented to recognise static and moving objects in real time. After detecting the objects, a Kalman Filter multi-object tracker is used to track these objects over time to determine the motion model. For each tracked object, its motion model represents its way of moving around the user. Motion features are extracted while the object is still in the user’s field of vision. These features are then used to quantify the danger using five predefined hazard classes using a neural network-based classifier. The classification performance is tested on both publicly available and private datasets and the system shows promising results with up to 90% True Positive Rate (TPR) associated with as low as 7% False Positive Rate (FPR), 13% False Negative Rate (FNR) and an average testing Mean Square Error (MSE) of 8.8%. The provided hazard type is then translated into a smart notification to increase the user’s cognitive perception using the healthy vision within the visual field. A participant study was conducted with a group of patients with different visual field defects to explore their feedback about the proposed system and the notification generation stage. The real-world outdoor evaluation of human subjects is planned to be performed in our near future work.
Prognosis and NT-proBNP in heart failure patients with preserved versus reduced ejection fraction

Background We assessed the prognostic significance of absolute and percentage change in N-terminal pro-B-type natriuretic peptide (NT-proBNP) levels in patients hospitalised for acute decompensated heart failure with preservedejection fraction (HFpEF) versus heart failure with reduced ejection fraction (HFrEF). Methods Patients with left ventricular ejection fraction ≥50% were categorised as HFpEF (n=283), while those with <40% as were categorised as HFrEF (n=776). Prognostic values of absolute and percentage change in NT-proBNP levels for 6 months all-cause mortality after discharge were assessed separately in patients with HFpEF and HFrEF by multivariable adjusted Cox regression analysis. Comorbidities were compared between heart failure groups. Results Discharge NT-proBNP levels predicted outcome similarly in HFpEF and HFrEF: for any 2.7-factor increase in NT-proBNP levels, the HR for mortality was 2.14 for HFpEF (95% CI 1.48 to 3.09) and 1.96 for HFrEF (95% CI 1.60 to 2.40). Mortality prediction was equally possible for NT-proBNP reduction of ≤30% (HR 4.60, 95% CI 1.47 to 14.40 and HR 3.36, 95% CI 1.93 to 5.85 for HFpEF and HFrEF, respectively) and for >30%–60% (HR 3.28, 95% CI 1.07 to 10.12 and HR 1.79, 95% CI 0.99 to 3.26, respectively), compared with mortality in the reference groups of >60% reductions in NT-proBNP levels. Prognostically relevant comorbidities were more often present in patients with HFpEF than patients with HFrEF in low (≤3000 pg/mL) but not in high (>3000 pg/mL) NT-proBNP discharge categories. Conclusions Our study highlights—after demonstrating that NT-proBNP levels confer the same relative risk information in HFpEF as in HFrEF—the possibility that comorbidities contribute relatively more to prognosis in patients with HFpEF with lower NT-proBNP levels than in patients with HFrEF.
The N termini of the inhibitory γ-subunits of phosphodiesterase-6 (PDE6) from rod and cone photoreceptors differentially regulate transducin-mediated PDE6 activation

Phosphodiesterase-6 (PDE6) plays a central role in both rod and cone phototransduction pathways. In the dark, PDE6 activity is suppressed by its inhibitory γ-subunit (Pγ). Rhodopsin-catalyzed activation of the G protein transducin relieves this inhibition and enhances PDE6 catalysis. We hypothesized that amino acid sequence differences between rod- and cone-specific Pγs underlie transducin's ability to more effectively activate cone-specific PDE6 than rod PDE6. To test this, we analyzed rod and cone Pγ sequences from all major vertebrate and cyclostome lineages and found that rod Pγ loci are far more conserved than cone Pγ sequences and that most of the sequence differences are located in the N-terminal region. Next we reconstituted rod PDE6 catalytic dimer (Pαβ) with various rod or cone Pγ variants and analyzed PDE6 activation upon addition of the activated transducin α-subunit (Gtα*-GTPγS). This analysis revealed a rod-specific Pγ motif (amino acids 9–18) that reduces the ability of Gtα*-GTPγS to activate the reconstituted PDE6. In cone Pγ, Asn-13 and Gln-14 significantly enhanced Gtα*-GTPγS activation of cone Pγ truncation variants. Moreover, we observed that the first four amino acids of either rod or cone Pγ contribute to Gtα*-GTPγS–mediated activation of PDE6. We conclude that physiological differences between rod and cone photoreceptor light responsiveness can be partially ascribed to ancient, highly conserved amino acid differences in the N-terminal regions of Pγ isoforms, demonstrating for the first time a functional role for this region of Pγ in the differential activation of rod and cone PDE6 by transducin.
Smoking Status Matters: A Direct Comparison of Smokers’ and Nonsmokers’ Psychophysiological and Self-Report Responses to Secondhand Smoke Anti-Tobacco PSAs

ABSTRACT Extensive research demonstrates that exposure to threatening anti-tobacco messages can lead to defensive message processing which reduces message effectiveness. However, research investigating whether this effect is moderated by the smoking status of the message viewer is lacking. In this study, participants (N = 48 smokers and N = 51 non-smokers) viewed and rated secondhand smoke anti-tobacco messages depicting both smoking cues and threat content, or messages depicting neither while heart rate, skin conductance, and facial EMG were recorded. Post viewing, self-reported emotional experience, level of counterarguing, and recognition memory were measured. In support of the LC4MP, there were no differences between smokers and non-smokers’ responses for non-threatening messages absent in smoking cues. However, messages that contained both smoking cues and threat content were defensively processed by smokers – but not non-smokers – as indicated by significantly faster heart rate, lower recognition memory and higher self-reported negativity, arousal, and counterarguments. The theoretical and practical implications are discussed.
Rheological Properties and Thermal Conductivity of Epoxy Resins Filled with a Mixture of Alumina and Boron Nitride

Electronic packaging materials with high thermal conductivity and suitable viscosity are necessary in the manufacturing of highly integrated electronic devices for efficient heat dissipation during operation. This study looked at the effect of boron nitride (BN) platelets on the rheology and thermal conductivity of composites based on alumina (Al2O3) and epoxy resin (EP) for the potential application as electronic packaging. The viscosity and thermal conductivity of the composite were increased upon increasing filler content. Furthermore, thermal conductivity of the BN/Al2O3/EP was much higher than that of Al2O3/EP at almost the same filler loadings. These unique properties resulted from the high thermal conductivity of the BN and the synergistic effect of the spherical and plate shapes of these two fillers. The orientation of BN platelets can be controlled by adjusting their loading to facilitate the formation of higher thermally conductive pathways. The optimal content of the BN in the Al2O3/EP composites was confirmed to be 5.3 vol %, along with the maximum thermal conductivity of 4.4 W/(m·K).