Miracle-dz/UniFAR-FTUs huggingface dataset:
Soil Salinity, a Serious Environmental Issue and Plant Responses: A Metabolomics Perspective

The effects of global warming have increasingly led to devastating environmental stresses, such as heat, salinity, and drought. Soil salinization is a serious environmental issue and results in detrimental abiotic stress, affecting 7% of land area and 33% of irrigated lands worldwide. The proportion of arable land facing salinity is expected to rise due to increasing climate change fuelled by anthropogenic activities, exacerbating the threat to global food security for the exponentially growing populace. As sessile organisms, plants have evolutionarily developed mechanisms that allow ad hoc responses to salinity stress. The orchestrated mechanisms include signalling cascades involving phytohormones, kinases, reactive oxygen species (ROS), and calcium regulatory networks. As a pillar in a systems biology approach, metabolomics allows for comprehensive interrogation of the biochemistry and a deconvolution of molecular mechanisms involved in plant responses to salinity. Thus, this review highlights soil salinization as a serious environmental issue and points to the negative impacts of salinity on plants. Furthermore, the review summarises mechanisms regulating salinity tolerance on molecular, cellular, and biochemical levels with a focus on metabolomics perspectives. This critical synthesis of current literature is an opportunity to revisit the current models regarding plant responses to salinity, with an invitation to further fundamental research for novel and actionable insights.
HOUSEBOAT SERVICES AND ITS FEATURES AS A TOURIST ATTRACTION IN TASIK KENYIR, TERENGGANU

Houseboats are one of the tourist attractions in Tasik Kenyir, Terengganu. Their unique services have not been documented much which prompted this study. The objectives of this study are (i) to identify the features of houseboats as tourist attractions in Tasik Kenyir, and (ii) to examine the characteristics of services offered by houseboat operators to tourists visiting the lake. The design of this study is exploratory and the approach used is qualitative through in-depth interviews supported by observation. Eight houseboat operators and workers were involved in the study as informants. The results showed that the features of houseboats are unique in that they have complete facilities like those found in a house. Among the facilities provided are a living room, bedrooms, kitchen area, toilet/bathroom, barbeque area, and provision of safety jackets. The services include the types of packages, rental price, booking mode, and duration of booking including houseboat services payment method. In summary, the fundamental study of houseboats as a tourist attraction in Tasik Kenyir is relevant for the purpose of documentation and as a reference to various parties such as tourism policymakers, houseboat operators and researchers.
Le crowdsourcing urbain comme nouvelle forme d’engagement citoyen

Web-based civic participation platforms that allow citizens to report defects in public space (graffitis, potholes, damaged pavements,…) have been experiencing a strong development in recent years. Beyond a real operational interest for the public space managers, these mechanisms of anomalies feedbacked by citizen "sensors" poses many questions to the administrations (organizational, political, ethical). This article proposes a study of the uses of urban crowdsourcing and their articulation with the public authorities starting from the example of the 311 reporting service of the City council of Paris DansMaRue. It sheds light on the new forms of engagement that take shape between citizens, technical services and elected representatives,
PVDF and P(VDF-TrFE) Electrospun Scaffolds for Nerve Graft Engineering: A Comparative Study on Piezoelectric and Structural Properties, and In Vitro Biocompatibility

Polyvinylidene fluoride (PVDF) and its copolymer with trifluoroethylene (P(VDF-TrFE)) are considered as promising biomaterials for supporting nerve regeneration because of their proven biocompatibility and piezoelectric properties that could stimulate cell ingrowth due to their electrical activity upon mechanical deformation. For the first time, this study reports on the comparative analysis of PVDF and P(VDF-TrFE) electrospun scaffolds in terms of structural and piezoelectric properties as well as their in vitro performance. A dynamic impact test machine was developed, validated, and utilised, to evaluate the generation of an electrical voltage upon the application of an impact load (varying load magnitude and frequency) onto the electrospun PVDF (15–20 wt%) and P(VDF-TrFE) (10–20 wt%) scaffolds. The cytotoxicity and in vitro performance of the scaffolds was evaluated with neonatal rat (nrSCs) and adult human Schwann cells (ahSCs). The neurite outgrowth behaviour from sensory rat dorsal root ganglion neurons cultured on the scaffolds was analysed qualitatively. The results showed (i) a significant increase of the β-phase content in the PVDF after electrospinning as well as a zeta potential similar to P(VDF-TrFE), (ii) a non-constant behaviour of the longitudinal piezoelectric strain constant d33, depending on the load and the load frequency, and (iii) biocompatibility with cultured Schwann cells and guiding properties for sensory neurite outgrowth. In summary, the electrospun PVDF-based scaffolds, representing piezoelectric activity, can be considered as promising materials for the development of artificial nerve conduits for the peripheral nerve injury repair.
Global Information for Multidimensional Tests

New measures of test information, termed global information, quantify test information relative to the entire range of the trait being assessed. Estimating global information relative to a non-informative prior distribution results in a measure of how much information could be gained by administering the test to an unspecified examinee. Currently, such measures have been developed only for unidimensional tests. This study introduces measures of multidimensional global test information and validates them in simulated data. Then, the utility of global test information is tested in neuropsychological data collected as part of Rush University’s Memory and Aging Project. These measures allow for direct comparison of complex tests calibrated in different samples, facilitating test development and selection.
Structure, Activity and Function of the Dual Protein Lysine and Protein N-Terminal Methyltransferase METTL13

METTL13 (also known as eEF1A-KNMT and FEAT) is a dual methyltransferase reported to target the N-terminus and Lys55 in the eukaryotic translation elongation factor 1 alpha (eEF1A). METTL13-mediated methylation of eEF1A has functional consequences related to translation dynamics and include altered rate of global protein synthesis and translation of specific codons. Aberrant regulation of METTL13 has been linked to several types of cancer but the precise mechanisms are not yet fully understood. In this article, the current literature related to the structure, activity, and function of METTL13 is systematically reviewed and put into context. The links between METTL13 and diseases, mainly different types of cancer, are also summarized. Finally, key challenges and opportunities for METTL13 research are pinpointed in a prospective outlook.
Clinicopathologic Factors Related to Post-Operative Outcome of Pituitary Adenoma: a Meta-Analysis

Purpose: About 30% to 40% of patients with pituitary adenoma require surgery. About 25% to 40% of those who have had surgery will have an aggressive outcome. The purpose of this study was to see if certain clinicopathologic factors such as size, type/subtype, invasiveness, proliferative (ki-67, mitotic rate, and p53), and grade influenced the aggressiveness of postoperative pituitary adenomas. Methods: The factors mentioned in the research objectives were examined as independent variables. Ten studies out of 736 were chosen. The 10 studies had 2727 participants and 632 cases. The monitoring lasted 3-11 years. The studies' quality ranged from fair to excellent. Results: The results of the meta-analysis were: size ≥10mm OR 1,79 (1,29-2,48), corticotroph OR 1,91 (1,41-2,58), invasive OR 3,67 (1,95-6,90), proliferative OR 4,78(3,61-6,32), Ki-67 ≥ 3% OR 4,13 (2,94-5,81), mitotic rate > 2 OR 3,91 (2,74-5,57), p53 positive OR 1,92 (1,28-2,90), and grade 2b OR 4,56 (3,0-6,91). Conclusions: Size, type/subtype, invasiveness, proliferative (ki-67, mitotic rate, and p53), and grade of postoperative pituitary adenoma influenced the postoperative aggressiveness outcome.
(Non)Parallel developmental mechanisms in vertebrate appendage reduction and loss

Abstract Appendages have been reduced or lost hundreds of times during vertebrate evolution. This phenotypic convergence may be underlain by shared or different molecular mechanisms in distantly related vertebrate clades. To investigate, we reviewed the developmental and evolutionary literature of appendage reduction and loss in more than a dozen vertebrate genera from fish to mammals. We found that appendage reduction and loss was nearly always driven by modified gene expression as opposed to changes in coding sequences. Moreover, expression of the same genes was repeatedly modified across vertebrate taxa. However, the specific mechanisms by which expression was modified were rarely shared. The multiple routes to appendage reduction and loss suggest that adaptive loss of function phenotypes might arise routinely through changes in expression of key developmental genes.
Environmental transformation of natural and engineered carbon nanoparticles and implications for the fate of organic contaminants

Environmental transformation of carbon nanoparticles can significantly affect their transport, fate, and effects. The last decade of environmental nano-science has often focused on understanding the behavior of well-defined engineered carbon nanoparticles (eCNPs) in the natural environment. However, more complex pyrogenic/petrogenic carbon nanoparticles (pCNPs), including those derived from soot, fossil coal, wildfire charcoal, and biochar, are more than four orders of magnitude more abundant in the environment. This paper aims to review findings from investigations into eCNPs and to consider their transferability to pCNPs, in order to improve our understanding of pCNPs and identify gaps in our knowledge. Findings from previous investigations into the chemical, physical and biological transformation of larger carbonaceous particles, as well as of eCNPs, can help us to understand the transformation of pCNPs. The transformation of soot during atmospheric transport is relatively well documented, whereas the transformation of pCNPs in soil, sediment, and aqueous systems remains poorly understood. To bridge findings on particulate transport, contaminant binding, and contaminant transformation from eCNPs to pCNPs, the complex compositions of pCNPs need to be taken into account. We therefore suggest that future research on pCNP transformation should focus on changes in intrinsic porosity and on interactions with non-carbonized phases, tar phases, and mineral phases, as well as with organo-mineral complexes in soils, sediments and water bodies.
Electrical properties of perovskite solar cells by illumination intensity and temperature‐dependent photoluminescence imaging

Hybrid organic–inorganic perovskite solar cells (PSCs) are one of the most promising candidates for next generation photovoltaics. Further improvement in their performance, particularly efficiency, durability and reproducibility, requires a deep understanding of recombination losses during fabrication and within a device itself. In this work, we report a contactless, imaging‐based procedure to spatially resolve electronic properties of PSCs including implied open‐circuit voltage (iVoc) and its temperature coefficient, ideality factor (nid) and activation energy of recombination (EA) by employing illumination intensity and temperature‐dependent photoluminescence. The illumination intensity dependence of iVoc allows the extraction of nid whereas its temperature dependence allows the extraction of the temperature coefficient and EA. This imaging approach is then applied to investigate changes of these electronic parameters on fully and partially fabricated devices.
TAL Effectors with Avirulence Activity in African Strains of Xanthomonas oryzae pv. oryzae

Background Xanthomonas oryzae pv. oryzae ( Xoo ) causes bacterial leaf blight, a devastating disease of rice. Among the type-3 effectors secreted by Xoo to support pathogen virulence, the Transcription Activator-Like Effector (TALE) family plays a critical role. Some TALEs are major virulence factors that activate susceptibility ( S ) genes, overexpression of which contributes to disease development. Host incompatibility can result from TALE-induced expression of so-called executor ( E ) genes leading to a strong and rapid resistance response that blocks disease development. In that context, the TALE functions as an avirulence (Avr) factor. To date no such avirulence factors have been identified in African strains of Xoo . Results With respect to the importance of TALEs in the Rice- Xoo pathosystem, we aimed at identifying those that may act as Avr factor within African Xoo . We screened 86 rice accessions, and identified 12 that were resistant to two African strains while being susceptible to a well-studied Asian strain. In a gain of function approach based on the introduction of each of the nine tal genes of the avirulent African strain MAI1 into the virulent Asian strain PXO99 A , four were found to trigger resistance on specific rice accessions. Loss-of-function mutational analysis further demonstrated the avr activity of two of them, talD and talI, on the rice varieties IR64 and CT13432 respectively. Further analysis of TalI demonstrated the requirement of its activation domain for triggering resistance in CT13432. Resistance in 9 of the 12 rice accessions that were resistant against African Xoo specifically, including CT13432, could be suppressed or largely suppressed by trans-expression of the truncTALE tal2h , similarly to resistance conferred by the Xa1 gene which recognizes TALEs generally independently of their activation domain. Conclusion We identified and characterized TalD and TalI as two African Xoo TALEs with avirulence activity on IR64 and CT13432 respectively. Resistance of CT13432 against African Xoo results from the combination of two mechanisms, one relying on the TalI-mediated induction of an unknown executor gene and the other on an Xa1 -like gene or allele.
Identification and quantification of particulate tracers of exhaust and non-exhaust vehicle emissions

Abstract. In order to identify and quantify key species associated with non-exhaust emissions and exhaust vehicular emissions, a large comprehensive dataset of particulate species has been obtained thanks to simultaneous near-road and urban background measurements coupled with detailed traffic counts and chassis dynamometer measurements of exhaust emissions of a few in-use vehicles well-represented in the French fleet. Elemental carbon, brake-wear metals (Cu, Fe, Sb, Sn, Mn), n-alkanes (C19-C26), light-molecular-weight polycyclic aromatic hydrocarbons (PAHs; pyrene, fluoranthene, anthracene) and two hopanes (17α21βnorhopane and 17α21βhopane) are strongly associated with the road traffic. Traffic-fleet emission factors have been determined for all of them and are consistent with most recent published equivalent data. When possible, light-duty- and heavy-duty-traffic emission factors are also determined. In the absence of significant non-combustion emissions, light-duty-traffic emissions are in good agreement with emissions from chassis dynamometer measurements. Since recent measurements in Europe including those from this study are consistent, ratios involving copper (Cu∕Fe and Cu∕Sn) could be used as brake-wear emissions tracers as long as brakes with Cu remain in use. Near the Grenoble ring road, where the traffic was largely dominated by diesel vehicles in 2011 (70 %), the OC∕EC ratio estimated for traffic emissions was around 0.4. Although the use of quantitative data for source apportionment studies is not straightforward for the identified organic molecular markers, their presence seems to well-characterize fresh traffic emissions.
Diastereomeric Salt Formation by the γ-Amino Acid RS-Baclofen and L-Malic Acid: Stabilization by Strong Heterosynthons Based on Hydrogen Bonds between RNH3+ and COOH/COO– Groups

Baclofen (BAC) is an important chiral active pharmaceutical ingredient for the treatment of specific neurological disorders that is commercially available only as RS-BAC (racemate). Using the liquid-assisted grinding technique, combination of RS-BAC with DL-MA in 1:1 stoichiometric ratio yielded a crystalline solid phase mixture of the enantiomeric salts R-BAC:L-MA and S-BAC:D-MA. Single-crystals suitable for SCXRD analysis of R-BAC:L-MA were obtained by fractional crystallization from a solution of RS-BAC and L-MA in a solvent mixture of ethyl acetate and water. Analysis of the supramolecular interaction patterns revealed that the crystal structure is stabilized by strong N+–H···–O, N+–H···O and O–H···–O hydrogen-bonding interactions. A comparative study with structurally related compounds enabled to identify common homo- and heterosynthons involving RNH3+, OH, and COOH/COO– groups. The spectroscopic, structural and thermogravimetric studies of the enantiomeric solid phase mixture of R-BAC:L-MA and S-BAC.
A novel synthetic route towards anti-inflammatory mediator: Resolvin E1

The health benefits of fish oil supplementations have been proven to be effective by several studies which are discussed in this thesis. It was found that these compounds had potent anti-inflammatory properties and since then has prompted much research into the use of these compounds as potential treatments for chronic inflammation based diseases, where the overuse of current anti-inflammatory drugs cause many problems with undesired side-effects. The aim of this research is to study the bioactivity of resolvin E1 and various analogues, and to determine a novel route towards resolvin E1 natural product so that bioactivity tests may be conducted in comparison of synthetically produced resolvin E1 and naturally extracted resolvin E1. The initial aim of this research was to develop a range of analogues of a fragment of Resolvin E1. This was so that a series of compounds could be produced with various R groups to identify any structure-activity relationships for this part of the natural product. There is one stereocentre in this fragment of resolvin E1 and it was decided that a racemic version of these compounds would be tested for bioactivity, and if any of the compounds had significant anti-inflammatory properties then the R and S versions could be separated, allowing for the testing of both enantiomers to determine which gave the most potent anti-inflammatory response. This led to the creation of several novel fragments and their biological testing. The secondary aim of the project was to complete the total synthesis of the resolvin E1 natural product. We devised a novel route towards resolvin E1 which used MIDA boronate protecting group to introduce a fixed trans double bond which was useful in a compound with multiple alkene systems. Resolvin E1 also contains three stereocentres, the synthesis from the fragment work was recycled to begin the synthesis, and made use of 1,2:5,6-di-O-isopropylidene-D-mannitol and Noyori s catalyst to setup the stereocentres. The use of new MIDA-boronate moieties were also explored in order to develop a new, efficient synthesis toward resolvin E1.
Comments on "Synergy-Based Functional Electrical Stimulation for Poststroke Rehabilitation of Upper-Limb Motor Functions"

Despite the interesting innovation proposed in the paper, “Synergy-based functional electrical stimulation for poststroke rehabilitation of upper-limb motor functions,” concerning the design of functional electrical stimulation (FES) profile, we are skeptical regarding the genuine effectiveness of the applied rehabilitation strategy. In this note, we argue that applying the rehabilitation method proposed in the above-noted work cannot pave the way for eliciting a motor learning process. Consequently, the proposed method cannot be regarded as a FES-based rehabilitation approach for poststroke rehabilitation of upper-limb motor functions.
Allogenous Selection of Mutational Collateral Resistance: Old Drugs Select for New Resistance Within Antibiotic Families

Allogeneous selection occurs when an antibiotic selects for resistance to more advanced members of the same family. The mechanisms of allogenous selection are (a) collateral expansion, when the antibiotic expands the gene and gene-containing bacterial populations favoring the emergence of other mutations, inactivating the more advanced antibiotics; (b) collateral selection, when the old antibiotic selects its own resistance but also resistance to more modern drugs; (c) collateral hyper-resistance, when resistance to the old antibiotic selects in higher degree for populations resistant to other antibiotics of the family than to itself; and (d) collateral evolution, when the simultaneous or sequential use of antibiotics of the same family selects for new mutational combinations with novel phenotypes in this family, generally with higher activity (higher inactivation of the antibiotic substrates) or broader spectrum (more antibiotics of the family are inactivated). Note that in some cases, collateral selection derives from collateral evolution. In this article, examples of allogenous selection are provided for the major families of antibiotics. Improvements in minimal inhibitory concentrations with the newest drugs do not necessarily exclude “old” antibiotics of the same family of retaining some selective power for resistance to the newest agents. If this were true, the use of older members of the same drug family would facilitate the emergence of mutational resistance to the younger drugs of the family, which is frequently based on previously established resistance traits. The extensive use of old drugs (particularly in low-income countries and in farming) might be significant for the emergence and selection of resistance to the novel members of the family, becoming a growing source of variation and selection of resistance to the whole family. In terms of future research, it could be advisable to focus antimicrobial drug discovery more on the identification of new targets and new (unique) classes of antimicrobial agents, than on the perpetual chemical exploitation of classic existing ones.