Miracle-dz/UniFAR-FTUs huggingface dataset:
Wheat Yield Progress Associated with Higher Stomatal Conductance and Photosynthetic Rate, and Cooler Canopies

Grain yields of eight representative semidwarf spring wheat (Triticum aestivum L.) cultivars released in northwest Mexico between 1962 and 1988 have increased linearly across years as measured in this region during 6 yr under favorable management and irrigation. To understand the physiological basis of this progress and possibly assist future selection for grain yield, leaf traits were determined during 3 yr in the same study. Stomatal conductance (g(S)), maximum photosynthetic rate (A(max)), and canopy temperature depression (CTD), averaged over the 3 yr, were closely and positively correlated with progress in the 6-yr mean yield. The correlation was greatest with g(S) (r = 0.94 P < 0.01). Compared with the overall yield increase of 27%, g(S) increased 63%, A(max) increased 23%, and canopies were 0.6 degree C cooler. Carbon-13 isotope discrimination was also positively associated with yield progress (r = 0.71, P < 0.05), but other leaf traits such as flag leaf area, specific leaf weight, percentage N and greeness were not, nor was crop growth rate around anthesis. The causal basis of the leaf activity interrelationships is reasonably clear, with both increased intercellular CO2 concentration and increased mesophyll activity contributing to the increase in A(max). However, causal links to the yield progress, and the accompanying increase in kernels per square meter, are not clear. It is concluded that g(S) and CTD should be further investigated as potential indirect selection criteria for yield.
Cognitive load and performance of health care professionals in donning and doffing PPE before and after a simulation-based educational intervention and its implications during the COVID-19 pandemic for biosafety.

INTRODUCTION The Personal Protective Equipment (PPE) is essential to avoid the COVID-19 spread to health care workers. Its use can be difficult, posing a high risk of contamination, mainly during doffing, then with the risk of becoming infected. METHODS We conducted a prospective before-and-after design that used clinical simulation as a research methodology in a clinical simulation center of Colombia. A simulation-based educational intervention with two cases related to COVID-19 was proposed in the emergency room and the intensive care unit. We conducted A workshop for donning and doffing of personal protective equipment (PPE) and a debriefing after the first case. RESULTS In the pre-test, 100% of participants failed donning and doffing PPE, 98.4% were contaminated, only one-person did not contaminate out of. The mean cognitive load was high (7.43±0.9 points). In the post-test, 100% were successful in donning the PPE and 94.8% in doffing; only 9.8% were contaminated. The mean of the cognitive load was low (4.1±1.4 points), and the performance was high (7.9±1.1). Of the total, 73.8% of participants reported overload in the doffing. The most difficulties were in gown/overall, and N95 mask removal. DISCUSSION The PPE donning and doffing is critical and may be changed significantly by active training. In responding to the current COVID-19 pandemic in 2020, activities of training in donning and doffing PPE would provide a means of training personnel, reducing the cognitive load and maybe the risk of contamination and infection of health care workers.
Reply to Kunoe (2020) and Ghosh and Singh (2020) regarding: Nunes et al., Opioid use and dropout from extended-release naltrexone in a controlled trial: implications for mechanism. Addiction. 2020 Feb;115(2):239-246.

Our paper, “Opioid use and dropout from extended-release naltrexone in a controlled trial: implications for mechanism” (Addiction. 2020 Feb;115(2):239-246) [1] generated interest from readers [2,3] on how to interpret the findings, and the role of cognitive and motivational processes, as opposed to conditioning, that may underlie patients’ differing behavioral responses to blocked opioid use. We appreciate Dr. Kunoe’s close reading of our paper. His commentary [2] highlights the potential complexity underlying antagonist treatment for opioid use disorder (OUD) and important directions for future research. Our paper emphasized the mechanism of extinction [1] because of the impressive phenomenon that naltrexone, at adequate blood levels, fully blocks the subjective and reinforcing effects of opioids, at least for most patients [4] and aids in mitigating most opioid use. We also discussed cognition and expectancy as mechanisms— the patient experiences the blockade and knows that the effects of future doses of opioids will be blocked, or has been instructed that there will be blockade and thus expects it. Dr. Kunoe argues that cognition and motivation are the more useful models [2], and he has a point. Patients in our study undoubtedly varied in their motivation entering the trial, wavered during the trial, and likely expected blockade. We were unable to
Androgen Deprivation Induces Reprogramming of Prostate Cancer Cells to Stem-Like Cells

In the past few years, cell plasticity has emerged as a mode of targeted therapy evasion in prostate adenocarcinoma. When exposed to anticancer therapies, tumor cells may switch into a different histological subtype, such as the neuroendocrine phenotype which is associated with treatment failure and a poor prognosis. In this study, we demonstrated that long-term androgen signal depletion of prostate LNCaP cells induced a neuroendocrine phenotype followed by re-differentiation towards a “stem-like” state. LNCaP cells incubated for 30 days in charcoal-stripped medium or with the androgen receptor antagonist 2-hydroxyflutamide developed neuroendocrine morphology and increased the expression of the neuroendocrine markers βIII-tubulin and neuron specific enolase (NSE). When cells were incubated for 90 days in androgen-depleted medium, they grew as floating spheres and had enhanced expression of the stem cell markers CD133, ALDH1A1, and the transporter ABCB1A. Additionally, the pluripotent transcription factors Nanog and Oct4 and the angiogenic factor VEGF were up-regulated while the expression of E-cadherin was inhibited. Cell viability revealed that those cells were resistant to docetaxel and 2-hidroxyflutamide. Mechanistically, androgen depletion induced the decrease in AMP-activated kinase (AMPK) expression and activation and stabilization of the hypoxia-inducible factor HIF-1α. Overexpression of AMPK in the stem-like cells decreased the expression of stem markers as well as that of HIF-1α and VEGF while it restored the levels of E-cadherin and PGC-1α. Most importantly, docetaxel sensitivity was restored in stem-like AMPK-transfected cells. Our model provides a new regulatory mechanism of prostate cancer plasticity through AMPK that is worth exploring.
Loss of ZIP facilitates JAK2-STAT3 activation in tamoxifen-resistant breast cancer

Significance Tamoxifen is beneficial in treating estrogen receptor–positive breast cancer, but resistance to this treatment eventually ensues. A method to identify mechanisms of tamoxifen resistance identified the histone deacetylase ZIP, leading to the finding that increased expression of the tyrosine kinase JAK2 is one important factor. As a result of this discovery, it may be possible to use an inhibitor of JAK2 to block the aberrant activation of STAT3 caused by ZIP deficiency to help overcome or prevent tamoxifen resistance. Tamoxifen, a widely used modulator of the estrogen receptor (ER), targets ER-positive breast cancer preferentially. We used a powerful validation-based insertion mutagenesis method to find that expression of a dominant-negative, truncated form of the histone deacetylase ZIP led to resistance to tamoxifen. Consistently, increased expression of full-length ZIP gives the opposite phenotype, inhibiting the expression of genes whose products mediate resistance. An important example is JAK2. By binding to two specific sequences in the promoter, ZIP suppresses JAK2 expression. Increased expression and activation of JAK2 when ZIP is inhibited lead to increased STAT3 phosphorylation and increased resistance to tamoxifen, both in cell culture experiments and in a mouse xenograft model. Furthermore, data from human tumors are consistent with the conclusion that decreased expression of ZIP leads to resistance to tamoxifen in ER-positive breast cancer.
Intelligent traffic management system: A systematic survey

: “The inferior transportation system of any country directly affects its socio-economic development, human health and environment. In this regard, Intelligent Transportation System (ITS) has been developed in order to deal with these growing problems of traffic congestion. ITS is a promising technology which makes the road transportation system intelligent with the use of computing, electronics and communication technologies. Therefore, the success of ITS in managing the traffic flows depends on the communication technologies and algorithms used. This review provides the insight of various types of communication technologies and algorithms used in ITS and an assessment of their effectiveness. The paper highlights the conclusions extracted from studies of different communication technologies and algorithms and besides suggests the future directions considering the challenges of presently used systems. ”
The Alternative Oxidase: in vivo Regulation and Function

Abstract: This review focuses on the biochemical regulation and function of the alternative oxidase in vivo. About 10 years ago, two activation mechanisms were discovered in isolated mitochondria, namely activation by reducing sulfur bonds in the protein and activation by an allosteric effect of pyruvate. It was proposed that plants would have a regulatory mechanism to modify alternative oxidase activity in vivo. However, more recent studies have shown that these two activation mechanisms may not play such an important role in regulation of alternative oxidase activity in vivo after all. Pyruvate and reduction of the sulfide bonds in the protein are definitely required for alternative oxidase activity, but they do not appear to be regulating the activity in vivo. Despite the energy wasting nature of the alternative oxidase, there was no obvious physiological function for the pathway for many years. It is now more clear that the alternative oxidase can prevent the production of excess reactive oxygen species radicals by stabilizing the redox state of the mitochondrial ubiquinone pool, while allowing continued activity of the citric acid cycle. This may be important under conditions when the NADH supply is relatively high (reductant overflow), or when the cytochrome pathway is restrained. The cytochrome pathway might be inhibited by naturally occurring cyanide, nitric oxide, sulfide, high concentrations of CO2, low temperatures, or by limited phosphate supply.
Ovarian Follicle Growth during Lactation Determines the Reproductive Performance of Weaned Sows

Simple Summary In this field study, the ovaries of weaned (n = 191, experiment 1) and lactating (n = 40, experiment 2) sows were transrectally scanned to measure the diameter of the follicles. Both the weaned and lactating sows showed great variability in the diameter of the ovarian follicles, indicating that the variability at weaning already existed during early lactation and was carried over to weaning. Sows with small follicles at weaning showed low reproductive performance and were more frequent among those with fewer farrowings and those weaned in summer–autumn. Abstract Factors causing variability in ovarian follicle size among weaned sows are not well known. This field study aimed to disclose influencing factors and evaluate if the differences at weaning were established during lactation. Ovaries were scanned using transrectal ultrasound. The first experiment was conducted over a year with 191 randomly chosen sows that were hierarchically grouped (p < 0.001) according to ovarian follicle diameter reached at weaning: Small (0.20–0.30 cm; n = 37), medium (0.31–0.39 cm; n = 75), and large (0.40-1.00 cm; n = 69). Sows with small follicles showed a higher incidence of post-weaning anestrus (p < 0.01), longer wean-to-estrus/ovulation intervals (p < 0.01) and farrowing smaller litters (p < 0.05). Ovaries with small follicles were more common among sows weaned in summer–autumn than in winter–spring (p < 0.01) and among sows of lower parity (1–3) (p < 0.05). In the second experiment, with 40 sows randomly chosen at farrowing, the ovaries were scanned at 7, 14, and 21 d post-partum. Sows showed great variability in ovarian follicular size during lactation with a consistent relationship between the three measurement times (r = 0.84, p < 0.01). Follicle size was smaller in sows nursing in summer–autumn than in winter–spring (p < 0.05). In conclusion, early lactation dictates the great variability in ovarian follicular diameter at weaning shown by sows. Sows with smaller follicles at weaning had longer intervals for estrus and ovulation and smaller litters at farrowing and they were in greater numbers among sows weaned during the summer and fall and among those with fewer previous farrowing.
The Anticoagulant Nafamostat Potently Inhibits SARS-CoV-2 S Protein-Mediated Fusion in a Cell Fusion Assay System and Viral Infection In Vitro in a Cell-Type-Dependent Manner

Although infection by SARS-CoV-2, the causative agent of coronavirus pneumonia disease (COVID-19), is spreading rapidly worldwide, no drug has been shown to be sufficiently effective for treating COVID-19. We previously found that nafamostat mesylate, an existing drug used for disseminated intravascular coagulation (DIC), effectively blocked Middle East respiratory syndrome coronavirus (MERS-CoV) S protein-mediated cell fusion by targeting transmembrane serine protease 2 (TMPRSS2), and inhibited MERS-CoV infection of human lung epithelium-derived Calu-3 cells. Here we established a quantitative fusion assay dependent on severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) S protein, angiotensin I converting enzyme 2 (ACE2) and TMPRSS2, and found that nafamostat mesylate potently inhibited the fusion while camostat mesylate was about 10-fold less active. Furthermore, nafamostat mesylate blocked SARS-CoV-2 infection of Calu-3 cells with an effective concentration (EC)50 around 10 nM, which is below its average blood concentration after intravenous administration through continuous infusion. On the other hand, a significantly higher dose (EC50 around 30 μM) was required for VeroE6/TMPRSS2 cells, where the TMPRSS2-independent but cathepsin-dependent endosomal infection pathway likely predominates. Together, our study shows that nafamostat mesylate potently inhibits SARS-CoV-2 S protein-mediated fusion in a cell fusion assay system and also inhibits SARS-CoV-2 infection in vitro in a cell-type-dependent manner. These findings, together with accumulated clinical data regarding nafamostat’s safety, make it a likely candidate drug to treat COVID-19.
DNA Replication Stress and Chromosomal Instability: Dangerous Liaisons

Chromosomal instability (CIN) is associated with many human diseases, including neurodevelopmental or neurodegenerative conditions, age-related disorders and cancer, and is a key driver for disease initiation and progression. A major source of structural chromosome instability (s-CIN) leading to structural chromosome aberrations is “replication stress”, a condition in which stalled or slowly progressing replication forks interfere with timely and error-free completion of the S phase. On the other hand, mitotic errors that result in chromosome mis-segregation are the cause of numerical chromosome instability (n-CIN) and aneuploidy. In this review, we will discuss recent evidence showing that these two forms of chromosomal instability can be mechanistically interlinked. We first summarize how replication stress causes structural and numerical CIN, focusing on mechanisms such as mitotic rescue of replication stress (MRRS) and centriole disengagement, which prevent or contribute to specific types of structural chromosome aberrations and segregation errors. We describe the main outcomes of segregation errors and how micronucleation and aneuploidy can be the key stimuli promoting inflammation, senescence, or chromothripsis. At the end, we discuss how CIN can reduce cellular fitness and may behave as an anticancer barrier in noncancerous cells or precancerous lesions, whereas it fuels genomic instability in the context of cancer, and how our current knowledge may be exploited for developing cancer therapies.
Enteroendocrine Dynamics – New Tools Reveal Hormonal Plasticity in the Gut

Abstract The recent intersection of enteroendocrine cell biology with single-cell technologies and novel in vitro model systems has generated a tremendous amount of new data. Here we highlight these recent developments and explore how these findings contribute to the understanding of endocrine lineages in the gut. In particular, the concept of hormonal plasticity, the ability of endocrine cells to produce different hormones over the course of their lifetime, challenges the classic notion of cell types. Enteroendocrine cells travel in the course of their life through different signaling environments that directly influence their hormonal repertoire. In this context, we examine how enteroendocrine cell fate is determined and modulated by signaling molecules such as bone morphogenetic proteins (BMPs) or location along the gastrointestinal tract. We analyze advantages and disadvantages of novel in vitro tools, adult stem cell or iPS-derived intestinal organoids, that have been crucial for recent findings on enteroendocrine development and plasticity. Finally, we illuminate the future perspectives of the field and discuss how understanding enteroendocrine plasticity can lead to new therapeutic approaches.
Inhibitory effect of clove oil on Listeria monocytogenes in meat and cheese

Abstract The antilisteric activity of clove oil was examined in meat and cheese at both 30°C and 7°C. At concentrations of 0·5% and 1% clove oil restricted the growth of Listeria monocytogenes in the food items at both temperatures. The inhibitory activity of clove oil was more pronounced at a concentration of 1%. Listeria counts in treated samples were 1–3 log 10 cfu g −1 less compared to controls at different intervals during storage. The results revealed the potential of clove oil as a natural preservative in meat and cheese.
Physicochemical Properties and In Vitro Starch Digestibility of Cooked Rice from Commercially Available Cultivars in Canada

ABSTRACTThe influence of amylose content, cooking, and storage on starch structure, thermal behaviors, pasting properties, and rapidly digestible starch (RDS), slowly digestible starch (SDS), and resistant starch (RS) in different commercial rice cultivars was investigated. Long grain rice with high-amylose content had a higher gelatinization temperature and a lower gelatinization enthalpy than the other rice cultivars with intermediate amylose content (Arborio and Calrose) and waxy type (glutinous). The intensity ratio of 1047/1022 cm–1 determined by Fourier Transform Infrared (FT-IR), which indicated the ordered structure in starch granules, was the highest in glutinous and the lowest in long grain. Results from Rapid ViscoAnalyser (RVA) showed that the rice cultivar with higher amylose content had lower peak viscosity and breakdown, but higher pasting temperature, setback, and final viscosity. The RDS content was 28.1, 38.6, 41.5, and 57.5% in long grain, Arborio, Calrose, and glutinous rice, respectiv.
Sputum as a Diagnostic Matrix for Respiratory Disease Screening

Mucus hyper-secretion is a common feature in most of respiratory diseases. Sputum contains white blood cells, cellular debris, dead tissue, serous fluid and offers an easy, inexpensive and non-invasive method of disease diagnosis. Sputum is rich in lipids, glycoconjugates and proteins. These molecules could be secreted from respiratory tract, lungs and infected sites as well as of pathogen origin. Complete sputum proteome profiling could be useful by adopting mass spectrometry methods to discover suitable clinical markers that could explain the disease and could be used for development of easy to use cost effective diagnostic test. The advancement of proteomics tools will be useful to carry out such biomarker discovery work. In this article, we will be discussing about the sputum proteome analysis in different respiratory disease conditions. Successful application of proteomics tool for understanding perturbed pulmonary disease conditions using sputum as a diagnostic matrix will be discussed.
Pathophysiology of achalasia

Achalasia is a rare esophageal motor disorder characterized by selective loss of esophageal inhibitory neuronal function, particularly at the lower esophageal sphincter (LES), where unopposed contractile tone leads to incomplete LES relaxation following swallows. Involvement of the esophageal body nerves leads to abnormal sequencing of contraction in some variants and aperistalsis in others. These motor abnormalities result in obstruction of food passage from the esophagus to the stomach and manifest clinically as symptoms such as dysphagia or chest pain. The gravity of the clinical presentation has spurred centuries of investigation into the disorder and its potential therapies. The modern diagnosis of achalasia hinges on demonstration of abnormal LES relaxation in conjunction with a non-peristaltic esophageal body on high resolution manometry (HRM). The pathophysiologic basis is hypothesized to be initiated by an environmental trigger, probably a viral infection, in genetically predisposed individuals. Given similar antigenic structure and an associated mimicry, antibodies formed against the environmental trigger cause inflammation and damage to esophageal neurons and ganglia. If this process results in neuronal death, classic achalasia features develop, with esophageal body aperistalsis and loss of LES relaxation. Alternatively, if inflammation is profound without neuronal death, an imbalance of esophageal excitation and inhibition ensues, and esophageal body contraction may be maintained, albeit exaggerated and/or premature, producing non-classic achalasia subtypes. Caution should be exercised as structural and mechanical obstructive processes can occur at the esophagogastric junction and can mimic idiopathic achalasia. Both local and distant neoplasia as well as Chagas disease can also result in an achalasia like motor pattern, from mechanisms that are not completely understood. From the days of whalebone dilatations to modern individualized surgical interventions, much has been learned about the pathophysiology of achalasia; however, it remains just as captivating as it ever was.