Miracle-dz/UniFAR-FTUs huggingface dataset:
An in vivo evaluation of the effects of feed restriction regimens on wooden breast using ultrasound images as a predictive tool

ABSTRACT 1. Gradual feed restriction was applied to broilers in order to reduce growth rate and, as a consequence, gradually impacts wooden breast myopathy occurrence. Ultrasound (US) images of breast muscle in live birds were correlated with breast fillets presenting wooden breast characteristics (WB). 2. A total of 1800 Cobb × Cobb 500 slow-feathering male chicks were fed one of the six feed restriction treatments with 12 replicates of 25 birds each, in a completely randomised design. Birds were fed ad libitum or were pair-fed to 50%, 60%, 70%, 80% or 90% of normal ad libitum intakes from 8 to 49 d to provide a gradual reduction in growth rate. Ultrasound images were obtained weekly from all birds and, in parallel, one bird per pen was weekly slaughtered and the major breast muscle was weighed and WB graded as 0 (normal), 1 (mild hardening in the upper), 2 (moderate hardening in the upper and/or lower), 3 (severe hardening) and 4 (severe hardening with haemorrhagic lesions and yellow fluid). Blood was taken for analysis of enzymes related to muscle cell breakdown. 3. Feed restriction applied at 50%, 60%, 70%, 80% and 90% of the ad libitum feed intake (FI) resulted in decreased body weight gain (BWG; P ≤ 0.05). 4. From 21 to 49 d, the increasing feed restriction led to linear increases (P ≤ 0.05) in WB scores, fibre density as well as breast depth and breast echogenicity. Creatine kinase, lactate dehydrogenase and aspartate aminotransferase concentration decreased linearly when broilers were feed restricted (P ≤ 0.05). 5. Wooden breast was positively correlated with echogenicity at 21 d (r = 0.510), 28 (r = 0.531), 35 (r = 0.470), 42 (r = 0.430) and 49 d (r = 0.548) (P ≤ 0.001). The use of breast echogenicity can be an additional tool to early detect alterations related to wooden breast.
Nanomaterials Used in Conservation and Restoration of Cultural Heritage: An Up-to-Date Overview

In the last few years, the preservation of cultural heritage has become an important issue globally, due to the fact that artifacts and monuments are continually threatened by degradation. It is thus very important to find adequate consolidators that are capable of saving and maintaining the natural aspect of these objects. This study aims to provide an updated survey of the main nanomaterials used for the conservation and restoration of cultural heritage. In the last few years, besides the classic nanomaterials used in this field, such as metal nanoparticles (copper and silver) and metal oxides (zinc and aluminum), hydroxyapatite and carbonated derivatives, tubular nanomaterials (such as carbon nanotubes) have been used as a potential consolidate material of cultural heritage. Tubular nanomaterials have attracted attention for use in different fields due to their structures, as well as their ability to present multiple walls. These nanotubes have the necessary properties in preserving cultural heritage, such as superior mechanical and elastic strength (even higher than steel), high hydrophobicity (with a contact angle up to 140°), optical properties (high photodegradation protection), large specific surface area (from 50 to 1315 m2/g, depending on the number of walls) for absorption of other nanomaterials and relatively good biocompatibility.
Mildly symptomatic heart failure with reduced ejection fraction: diagnostic and therapeutic considerations

Whereas up to about half of patients with heart failure with reduced ejection fraction (HFrEF) report no or only mild symptoms and are considered as clinically stable, the progressive nature of HFrEF, often silent, renders clinical stability a misleading situation, especially if disease progression is unrecognized. We highlight the challenges in the definition of clinical stability and mild symptomatic status in HFrEF, outline clinical characteristics and available diagnostic tools, and discuss evidence and gaps in the current guidelines for the management of these patients.
CAM guard cell anion channel activity follows transcript abundance and is suppressed by apoplastic malate.

* Plants utilizing crassulacean acid metabolism (CAM) concentrate CO2 around RuBisCO while reducing transpirational water loss associated with photosynthesis. Unlike stomata of C3 and C4 species, CAM stomata open at night for the mesophyll to fix CO2 into malate (Mal) and store it in the vacuole. CAM plants decarboxylate Mal in the light, generating high CO2 concentrations within the leaf behind closed stomata for refixation by RuBisCO. * CO2 may contribute to stomatal closure but additional mechanisms, plausibly including Mal activation of anion channels, ensure closure in the light. * In the CAM species Kalanchoë fedtschenkoi, we found that guard cell anion channel activity, recorded under voltage clamp, follows KfSLAC1 and KfALMT12 transcript abundance, declining to near-zero by the end of the light period. Unexpectedly, however, we found that extracellular Mal inhibited the anion current of Kalanchoë guard cells, both in wild-type and RNAi mutants with impaired Mal metabolism. * We conclude that the diurnal cycle of anion channel gene transcription, rather than the physiological signal of Mal release, is a key factor in the inverted CAM stomatal cycle.
Neuropeptides in the cat diencephalon: I. Thalamus.

We have reviewed the distribution and functions of neuropeptides in the cat hypothalamus. Our review focuses in the cat hypothalamus on the following points: 1) the distribution and coexistence of neuropeptides; 2) the anatomical relationships among the different neuropeptides; 3) the peptidergic pathways (afferences and efferences); 4) comparison of the distribution of neuropeptides in the mammalian hypothalamus; and 5) the physiological functions of neuropeptides. Although at present the distribution of many neuropeptides in the hypothalamus of the cat is known, there is little information about other aspects of neuropeptides in the same diencephalic region. Thus, in order to know more the distribution and functions of neuropeptides in the cat hypothalamus in detail, in the future appropriate methodologies must be applied in order to determine, for example, the distribution of the neuropeptide receptors, the distribution of neuropeptidases, the peptidergic synaptic connections, the coexistence of neuropeptides and the physiological actions of the neuropeptides in the cat hypothalamus.
A Single Amino Acid Change in Nramp6 from Sedum Alfredii Hance Affects Cadmium Accumulation

SaNramp6 in Sedum alfredii encodes a membrane-localized metal transporter. We isolated the SaNramp6h allele from the hyperaccumulating ecotype (HE) of S. alfredii. When this allele was expressed in transgenic yeast and Arabidopsis thaliana, it enhanced their cadmium (Cd) sensitivity by increased Cd transport and accumulation. We isolated another allele, SaNramp6n, from a nonhyperaccumulating ecotype (NHE) of S. alfredii. Amino acid sequence comparisons revealed three amino acid differences between SaNramp6h and SaNramp6n. We investigated the Cd transport activity of the Nramp6 allele, and determined which residues are essential for the transport activity. We conducted structure-function analyses of SaNramp6 based on site-directed mutagenesis and functional assays of the mutants in yeast and Arabidopsis. The three residues that differed between SaNramp6h and SaNramp6n were mutated. Only the L157P mutation of SaNramp6h impaired Cd transport. The other mutations, S218N and T504A, did not affect the transport activity of SaNramp6h, indicating that these residues are not essential for metal selectivity. Transgenic plants overexpressing SaNramp6hL157P showed altered metal accumulation in shoots and roots. Our results suggest that the conserved site L157 is essential for the high metal transport activity of SaNramp6h. This information may be useful for limiting or increasing Cd transport by other plant natural resistance associated macrophage protein (NRAMP) proteins.
Oat, oat-pea, barley, and barley-pea for forage yield, forage quality, and alfalfa establishment

(.)The objective of this field study was to determine the effect of field pea [Pisum sativum L. var. arvense (L.) Poiret] on alfalfa establishment when seeded in mixtures with oat or barley. (.)Although barley-pea was highest in forage yield, we concluded that oat-pea was the best companion crop in this study because it had superior forage quality
Autoimmune regulator gene, Aire, and its relevance to central tolerance against myelin proteins

The autoimmune regulator (Aire) is a key transcription factor that promotes promiscuous expression of tissue‐specific antigens by medullary thymic epithelial cells (mTEC), and mediates a role in negative selection of autoreactive T cells. Tagawa et al. reported the central role of Aire in establishing central tolerance to myelin antigen, and its deficiency resulted in spontaneous autoreactivity against central nervous system myelin antigen. The role of mTEC‐dependent tolerance in multiple sclerosis must await further study.
Possible Adverse Effects of High-Dose Nicotinamide: Mechanisms and Safety Assessment

Nicotinamide (NAM) at doses far above those recommended for vitamins is suggested to be effective against a wide spectrum of diseases and conditions, including neurological dysfunctions, depression and other psychological disorders, and inflammatory diseases. Recent increases in public awareness on possible pro-longevity effects of nicotinamide adenine dinucleotide (NAD+) precursors have caused further growth of NAM consumption not only for clinical treatments, but also as a dietary supplement, raising concerns on the safety of its long-term use. However, possible adverse effects and their mechanisms are poorly understood. High-level NAM administration can exert negative effects through multiple routes. For example, NAM by itself inhibits poly(ADP-ribose) polymerases (PARPs), which protect genome integrity. Elevation of the NAD+ pool alters cellular energy metabolism. Meanwhile, high-level NAM alters cellular methyl metabolism and affects methylation of DNA and proteins, leading to changes in cellular transcriptome and proteome. Also, methyl metabolites of NAM, namely methylnicotinamide, are predicted to play roles in certain diseases and conditions. In this review, a collective literature search was performed to provide a comprehensive list of possible adverse effects of NAM and to provide understanding of their underlying mechanisms and assessment of the raised safety concerns. Our review assures safety in current usage level of NAM, but also finds potential risks for epigenetic alterations associated with chronic use of NAM at high doses. It also suggests directions of the future studies to ensure safer application of NAM.
Adamantinomatous Craniopharyngioma in an Adult: A Case Report with NGS Analysis

Purpose Several recent studies have documented CTNNB1 and BRAF mutations which are mutually exclusive for adamantinomatous craniopharyngioma (ACP) and papillary craniopharyngioma (PCP) tumors. This discovery is helpful in the development of novel targeted therapies in successful clinical trials with BRAF mutations in PCP cases. However, no such targeted therapy is available yet for ACP. Here, we report novel mutations, which are not previously reported, in a case of an adult ACP using NGS analysis. Results Patient DNA was sequenced using Ion PI v3 chip on Ion Proton. A total of 16 variants were identified in this tumor by NGS analysis, out of which four were missense mutations, seven were synonymous mutations, and five were intronic variants. In CTNNB1 gene a known missense mutation in c.101G>T; in TP53 a known missense mutation in c.215C>G; and two known missense variants in PIK3CA, viz., in c.1173A>G; in exon 7, and in c.3128T>C; in exon 21, were found, respectively. Seven synonymous mutations were detected in this tumor, viz., in IDH1 (rs11554137), in FGFR3 (rs7688609), in PDGFRA (rs1873778), in APC (COSM3760869), in EGFR (rs1050171), in MET (rs35775721), and in RET (rs1800861), respectively. Three known, intronic variants were found in genes, such as PIK3CA, KDR, and JAK3, respectively. Also, a 3’-UTR and a splice site acceptor site variant in CSF1R and FLT3 genes were found in this tumor. We have shown allele coverage, allele ratio, and p-value, for all these mutations. The p-values and Phred quality score were significantly high for these variants. Conclusion As reported in previous studies, in ACP tumors we found a CTNNB1 mutation by NGS analysis. The PIK3CA variants we detected were not known previously in ACP tumors. Finding the PIK3CA mutations in the ACP tumors may help develop targeted therapy for a subset of craniopharyngiomas with PIK3CA activating mutations. Clinical trials are in progress with specific PIK3CA inhibitors in advanced stages of many cancers.
Sex‐specific differences in patients with nonmelanoma skin cancer of the pinna

Generally, it is known that men are affected more frequently by nonmelanoma skin cancer (NMSC) than women. The aim of our study was to investigate the effect of sex on the characteristics of NMSCs of the pinna at the population that our center serves and to compare it with the international data.
Comparative cytogenetics of Loricariidae (Actinopterygii: Siluriformes): Emphasis in Neoplecostominae and Hypoptopomatinae

Abstract Over the last two decades, several classification changes were proposed for the family Loricariidae and their phylogenetic relationships could be only partly resolved so far. Two major problematic groups are the subfamilies Hypoptopomatinae and Neoplecostominae. Therefore, we analysed four species of this family, being three Neoplecostominae (Neoplecostomus yapo, Kronichthys lacerta and Isbrueckerichthys duseni), and one Hypoptopomatinae representative (Parotocinclus maculicauda), in order to compare the chromosomal data to other Loricariidae subfamilies and to the outgroup Trichomycterus sp. To accomplish that, conventional (diploid numbers, karyotype formulae, fundamental number and Ag-NORs – nucleolar organizer regions) and molecular chromosomal markers (dual color FISH – fluorescence in situ hybridization - with 18S and 5S rDNA probes) were used. A similar karyotype structure was reported amongst the studied species. Inferences about putative plesiomorphic chromosomal markers were established and/or corroborated in Loricariidae, such as: 2n = 54 chromosomes, small amounts of heterochromatin, a single NOR-bearing pair and synteny 18S and 5S rDNA at interstitial region. Thus, the present chromosomal analysis hypothesizes primitive chromosomal characters and contributes to a better understanding of chromosomal evolutionary processes among loricariids.
Effects of Short Term Metformin Treatment on Brown Adipose Tissue Activity and Plasma Irisin Levels in Women with Polycystic Ovary Syndrome: A Randomized Controlled Trial

Abstract Polycystic ovary syndrome (PCOS) is a chronic dysfunction associated with obesity and metabolic disorders that can be ameliorated by treatment with metformin. Brown adipose tissue (BAT) has been recently identified in adult humans, and irisin is a myokine that induces BAT formation. The aim of this randomized controlled trial was to evaluate whether a short term treatment with metformin alters BAT activity and plasma irisin levels in women with PCOS. The participants were randomly assigned to receive metformin (1500 mg/day, n=21) or placebo (n=24) during 60 days. BAT activity was assessed by 18F-FDG positron emission tomography-computed tomography (PET-CT) and plasma irisin levels were measured by enzyme immunoassay. The groups were similar in age, body measures, metabolic profile and PCOS phenotypes. BAT activity did not change significantly in the women treated with metformin (median Δ SUVmax=–0.06 g/ml, interquartile interval –2.81 to 0.24 g/ml, p=0.484, Wilcoxon’s test) or placebo (median Δ SUVmax=0.98 g/ml, interquartile interval –2.94 to 4.60 g/ml, p=0.386). In addition, plasma irisin levels remained unchanged in the groups treated with metformin (median Δ=–98 ng/ml, interquartile interval –366 to 60 ng/ml, p=0.310) and placebo (median Δ=28 ng/ml, interquartile interval –1260 to 215 ng/ml, p=0.650). These results suggest that in PCOS women BAT activity and plasma irisin levels may not change after a brief treatment with metformin.
Development of a rapid, one-step-visual method to detect Salmonella based on IC-LAMP method.

Background Salmonella can cause serious human gastroenteritis and is frequently isolated from various food samples. The cell culturing, immunoassay, and polymerase chain reactions (PCR) are the current methods to detect such pathogenic agents. However, these methods are time-consuming and labor-intensive, and thus unavailable for rapid-monitoring of Salmonella. Aims This study aimed to develop an immunocapture-loop-mediated isothermal amplification (IC-LAMP) for rapid and sensitive detection of Salmonella. Methods Salmonella was used as antigen to produce monoclonal antibody (mAb) and mAbs were prepared via subcloning three times. The mAb 1B12 with high affinity was coated on the surface of the immuno-magnetic beads (IMBs) to capture Salmonella. The enriched products (IMBs-Salmonella) were used for LAMP using the special primers targeted the conserved invA gene of Salmonella. Results The IC-LAMP was developed based on mAb 1B12 and LAMP. Targeting the conserved invA gene of Salmonella, the detection time was shortened to 50 min from three days. If the reaction contains Salmonella, the green fluorescence and the trapezoidal strip can be clearly observed. Importantly, the method combines the specificity of antibody and LAMP with a detection limit of 5 CFU/ml in artificially contaminated water and milk. The specificity of this method was demonstrated by testing other similar bacteria. The results indicate that the IC-LAMP reacts only with Salmonella and does not cross-react with other similar bacteria. Conclusion The IC-LAMP assay developed here is a rapid, sensitive, one-step-visual method to screen for the presence of Salmonella in food samples. This method is faster than traditional PCR, LAMP, and other methods, and can be used as a primary screening method for the detection.
Intergroup encounters in mountain gorillas of Bwindi Impenetrable National Park, Uganda

The aim of this study was to examine the influence of frugivory and social factors on behaviour during intergroup encounters in the mountain gorillas of Bwindi Impenetrable National Park, Uganda. Frugivory was associated with an increase in the frequency of intergroup encounters, but had no impact on the length of the encounter, or on the type of behaviour exhibited, suggesting that while neighbouring groups may be attracted to limited fruit patches, there was no indication of between group feeding competition. Encounters with solitary males were more likely to elicit more avoidance, less tolerance, more herding behaviour, and a trend towards more aggression than encounters with groups. The number of potential migrant females and the number of silverbacks had no impact on the type of behaviour exhibited. However, an older dominant male was less likely to be aggressive towards the opposing group when a subordinate male was present, suggesting a collective action problem rather than cooperation in multi-male groups. Combined these results suggest that between group competition is linked more to mate defence and acquisition than resource defence. This study contributes to our understanding of the relationship among intergroup encounters, feeding ecology, reproductive strategies and social structure in gorillas.
Insect wing damage: causes, consequences and compensatory mechanisms

ABSTRACT The evolution of wings has played a key role in the success of insect species, allowing them to diversify to fill many niches. Insect wings are complex multifunctional structures, which not only have to withstand aerodynamic forces but also need to resist excessive stresses caused by accidental collisions. This Commentary provides a summary of the literature on damage-reducing morphological adaptations in wings, covering natural causes of wing collisions, their impact on the structural integrity of wings and associated consequences for both insect flight performance and life expectancy. Data from the literature and our own observations suggest that insects have evolved strategies that (i) reduce the likelihood of wing damage and (ii) allow them to cope with damage when it occurs: damage-related fractures are minimized because wings evolved to be damage tolerant and, in the case of wing damage, insects compensate for the reduced aerodynamic efficiency with dedicated changes in flight kinematics. Summary: We suggest that flying insects exhibit a great resilience to wing injuries not only because wings have evolved to be damage tolerant but also because insects might compensate for wing damage by altering wing kinematics.
Tumor Necrosis Factor Alpha-Induced Proteins in Malignant Tumors: Progress and Prospects

Abstract Tumor necrosis factor (TNF) is the first cytokine used in tumor biotherapy, but TNF-related drugs are limited by the lack of specific targets. Tumor necrosis factor alpha-induced proteins (TNFAIPs), derived from TNF, is a protein family and participates in proliferation, invasion and metastasis of tumor cells. In order to better understand biological functions and potential roles of TNFAIPs in malignant tumors, this paper in the form of “Gene–Protein–Tumor correlation” summarizes the biological characteristics, physiological functions and mechanisms of TNFAIPs by searching National Center of Biotechnology Information, GeneCards, UniProt and STRING databases. The relationship between TNFAIPs and malignant tumors is analyzed, and protein–protein interaction diagram in members of TNFAIPs is drawn based on TNF for the first time. We find that TNF as a key factor is related to TNFAIP1, TNFAIP3, TNFAIP5, TNFAIP6, TNFAIP8 and TNFAIP9, which can be directly involved in activating TNFAIP1, TNFAIP5, TNFAIP8 and TNFAIP9. We confirm that the mechanism of TNFAIP1, TNFAIP2 and TNFAIP3 inducing tumors may be related to NF-κB signaling pathway, but the mechanism of tumor induction by other members of TNFAIPs is not clear. In the future, translational studies are needed to explore the mechanisms of TNF-TNFAIPs-tumors.
Bipedalism, flight, and the evolution of theropod locomotor diversity

ABSTRACT The evolution of theropod flight has been characterized as a shift from one to three locomotor modules. Basal theropods, which were terrestrial bipeds, had a single locomotor module composed of the hind limb and tail. In birds, aerial locomotion was acquired with the origination of the wing module and a decoupling of the hind limb and tail into separate pelvic and caudal modules. This increase in modularity is thought to have granted birds more locomotor “options” than non-avian theropods. More specifically, an aerial locomotor system could have eased constraints on the hind limb and allowed specialization for habitats and lifestyles unavailable to non-birds. If so, bird hind limbs should be more disparate than those of non-avian theropods. We addressed this hypothesis by visualizing one aspect of limb design, the proportions of the three main segments, using ternary diagrams. Our results show that avian hind limb proportions are much more disparate than those of non-avian theropods. This broad r.