Miracle-dz/UniFAR-FTUs huggingface dataset:
The economics and politics of foreign aid and domestic revenue

The main argument of this paper is that there is considerable heterogeneity in the way aid can shape tax performance in developing countries: through behavioural effects, donor conditionality, recipient policy reform and technical assistance; and these effects are countryspecific. We investigate these effects by applying the dynamic Common Correlated Effects Mean Group estimator to a dataset comprising 84 developing countries from 1980 to 2013. The following results ensued: aid and taxes comprise an equilibrium relation, with a positive long-run association between aid and taxes; causality runs from aid to taxes, suggesting that on average, changes in aid induce permanent changes in taxes.
TET3 overexpression facilitates DNA reprogramming and early development of bovine SCNT embryos.

Somatic cell nuclear transfer (SCNT) has been successfully used for cloning in a variety of mammalian species. However, SCNT reprogramming efficiency is relatively low, in part due to incomplete DNA methylation reprogramming of donor cell nuclei. We previously showed that ten-eleven translocation 3 (TET3) is responsible for active DNA demethylation during preimplantation embryonic development in bovines. In this study, we constructed TET3-overexpressing cell lines in vitro and observed that the use of these fibroblasts as donor cells increased the blastocyst rate by approximately 18 percentage points compared to SCNT. The overexpression of TET3 in bovine SCNT embryos caused a decrease in the global DNA methylation level of the pluripotency genes Nanog and Oct-4, ultimately resulting in an increase in the transcriptional activity of these pluripotency genes. Moreover, the quality of bovine TET3-NT embryos at the blastocyst stage was significantly improved, and bovine TET3-NT blastocysts possessed more total number of cells and fewer apoptotic cells than the SCNT blastocysts, similar to In Vitro Fertilization (IVF) embryos. Nevertheless, DNA methylation of the imprinting control region (ICR) for the imprinted genes H19-IGF2 in SCNT embryos remained unaffected by TET3 overexpression, maintaining parent-specific activity for further development. Thus, the results of our study provides a promising approach to rectify incomplete epigenetic reprogramming and achieve higher cloning efficiency.
Polycaprolactone/Gelatin/Hyaluronic Acid Electrospun Scaffolds to Mimic Glioblastoma Extracellular Matrix

Glioblastoma (GBM), one of the most malignant types of human brain tumor, is resistant to conventional treatments and is associated with poor survival. Since the 3D extracellular matrix (ECM) of GBM microenvironment plays a significant role on the tumor behavior, the engineering of the ECM will help us to get more information on the tumor behavior and to define novel therapeutic strategies. In this study, polycaprolactone (PCL)/gelatin(Gel)/hyaluronic acid(HA) composite scaffolds with aligned and randomly oriented nanofibers were successfully fabricated by electrospinning for mimicking the extracellular matrix of GBM tumor. We investigated the effect of nanotopography and components of fibers on the mechanical, morphological, and hydrophilic properties of electrospun nanofiber as well as their biocompatibility properties. Fourier transform infrared spectroscopy (FTIR) and differential scanning calorimetry (DSC) have been used to investigate possible interactions between components. The mean fiber diameter in the nanofiber matrix was increased with the presence of HA at low collector rotation speed. Moreover, the rotational velocity of the collector affected the fiber diameters as well as their homogenous distribution. Water contact angle measurements confirmed that hyaluronic acid-incorporated aligned nanofibers were more hydrophilic than that of random nanofibers. In addition, PCL/Gel/HA nanofibrous scaffold (7.9 MPa) exhibited a significant decrease in tensile strength compared to PCL/Gel nanofibrous mat (19.2 MPa). In-vitro biocompatibilities of nanofiber scaffolds were tested with glioblastoma cells (U251), and the PCL/Gel/HA scaffolds with random nanofiber showed improved cell adhesion and proliferation. On the other hand, PCL/Gel/HA scaffolds with aligned nanofiber were found suitable for enhancing axon growth and elongation supporting intracellular communication. Based on these results, PCL/Gel/HA composite scaffolds are excellent candidates as a biomimetic matrix for GBM and the study of the tumor.
Surface Interactions and Mechanisms Study on the Removal of Iodide from Water by Use of Natural Zeolite-Based Silver Nanocomposites

In this work a natural zeolite was modified with silver following two different methods to derive Ag2O and Ag0 nanocomposites. The materials were fully characterized and the results showed that both materials were decorated with nanoparticles of size of 5–25 nm. The natural and modified zeolites were used for the removal of iodide from aqueous solutions of initial concentration of 30–1400 ppm. Natural zeolite showed no affinity for iodide while silver forms were very efficient reaching a capacity of up to 132 mg/g. Post-adsorption characterizations showed that AgI was formed on the surface of the modified zeolites and the amount of iodide removed was higher than expected based on the silver content. A combination of experimental data and characterizations indicate that the excess iodide is most probably related to negatively charged AgI colloids and Ag-I complexes forming in the solution as well as on the surface of the modified zeolites.
The Role of Vegetable Genetic Resources in Nutrition Security and Vegetable Breeding

Malnutrition, comprising undernutrition, micronutrient deficiency, and overnutrition, is more widespread than hunger per se and affects most nations around the globe. The diversity and the quality of food produced and consumed are decisive factors when addressing the triple burden of malnutrition. In this context, fruit, vegetables, and nuts are increasingly moving into the focus of the nutrition community. Agricultural policies and investments in agriculture are predominantly focused on staple food production, neglecting the economic and nutritional potential of fruit and vegetables. While global vegetables are well represented in genebanks around the globe, this is much less the case for traditional vegetables. Collecting efforts in hotspots of vegetable diversity in Africa and Asia are required to conserve this germplasm before it is being replaced by modern varieties. Home gardens, community seedbanks, and variety introduction through vegetable seed kits are ways how genebanks can link with the farming community to strengthen the informal seed sector. This in turn may result in more diverse production systems and increased consumption of fruit and vegetables. In the formal seed sector, vegetable breeders need access to a wide diversity of genetic resources, predominantly farmers’ varieties, landraces, and crop wild relatives. Genomics-assisted breeding is increasingly facilitating the introgression of favorable genes and quantitative trait loci (QTLs) with complex inheritance patterns from wild species into cultigens. This will lead to wider use of crop wild relatives in the development of resilient cultivars.
Genetic Variability and Population Structure in the Sardinian Anglo-Arab Horse

Simple Summary It is known that animal populations might be affected by bottleneck phenomena, which reduce genetic variability, increase inbreeding and consequentially reduce evolutionary potential. Pedigree completeness, genetic variability and population structure were analyzed in the Sardinian Anglo-Arab horse (SAA) breed, and the analyzed results were compared with three other Italian horse populations: Maremmano, Murgese and Bardigiano (reported in bibliography). In addition, the maternal lineage was analyzed through mitochondrial DNA in order to preserve and improve the breed. The estimated parameters suggest that the SAA breed is well managed, especially when considering the female lineage because it still conserves a high number of founder mares. The role of breeding programs in the conservation of genetic diversity is essential. In fact, a breeding program might lead to fast genetic progress; however, it might also lead to a high level of inbreeding and consequently to a genetic drift. Analyzing both these parameters and the additional use of mitochondrial DNA might be an effective tool not only to verify the success of a breeding program, but also to be helpful for breeders on planning effective mating programs. Abstract The Sardinian Anglo Arab (SAA) is a famous horse breed in Italy, with a significant historical background in the island of Sardinia. The aim of the study is to perform an evaluation of genetic variability in SAA using pedigree and mitochondrial data. In the current population, pedigree completeness was observed to be close to 100%, while the inbreeding coefficient and the average relatedness were lower than 3%. The ratio of effective founders/numbers of ancestors was 3.68 for the whole pedigree. The effective population size (Ne) computed by an individual increase in inbreeding (Ne_1) was 456.86, the Ne on equivalent generations (Ne_2) was 184.75, and this value slightly increased to 209.31 when computed by log-regression on equivalent generations (Ne_3). These results suggest the presence of crossbreeding and bottleneck phenomena, and they were compared with other Italian horses (reported in bibliography) to present the SAA among the Italian horse breeds scenario. Furthermore, the noteworthy mitochondrial variability reflects the use of a considerable number of founder mares; the contribution of L lineage was very important, probably because of the re-colonization from the Iberian Peninsula after the Last Glacial Maximum.
Cutting edge or blunt instrument: how to decide if a stepped wedge design is right for you

The last 10 years have seen an extraordinary surge of interest in ‘stepped wedge’ designs for evaluating interventions to improve health and social care. Reviews of published trials and registered protocols have shown an exponential increase in the number of trials citing a stepped wedge approach.1–6 A growing body of work on methods for the design, conduct and analysis of stepped wedge trials has emerged, building on seminal work by Hussey and Hughes in 2007.7 The Consolidated Standards of Reporting Trials reporting guidelines for stepped wedge cluster randomised trials are now available, making it easier for investigators to appraise evidence and plan their own evaluations.8 But published examples of stepped wedge evaluations in quality improvement illustrate some of the practical challenges. On the one hand, limited research resources may force investigators to stagger implementation at different sites9; on the other hand, persuading sites to follow a precise, predetermined schedule for implementation may be hard.10 In fact, investigators who plan a stepped wedge trial must balance a number of logistical, ethical and methodological issues.11 12 In this article, we focus predominantly on the design of such evaluations, and encourage a questioning approach. We take a ‘trial’ to mean a study involving the prospective, experimental allocation of interventions,13 but more particularly we focus on studies where those allocations are randomised. We start with the question of what is meant by a stepped wedge trial. The vast majority of stepped wedge trials are cluster randomised, and when people refer to stepped wedge designs this is usually what they have in mind. A cluster randomised trial is a trial in which all the participants at the same site or ‘cluster’ are allocated to the same intervention.14 Stepped wedge cluster randomised trials are run over an …
TFII-I-mediated polymerase pausing antagonizes GLI2 induction by TGFβ

Abstract The modulation of GLI2, an oncogenic transcription factor commonly upregulated in cancer, is in many cases not due to genetic defects, suggesting dysregulation through alternative mechanisms. The identity of these molecular events remains for the most part unknown. Here, we identified TFII-I as a novel repressor of GLI2 expression. Mapping experiments suggest that the INR region of the GLI2 promoter is necessary for GLI2 repression. ChIP studies showed that TFII-I binds to this INR. TFII-I knockdown decreased the binding of NELF-A, a component of the promoter–proximal pausing complex at this site, and enriched phosphorylated RNAPII serine 2 in the GLI2 gene body. Immunoprecipitation studies demonstrate TFII-I interaction with SPT5, another pausing complex component. TFII-I overexpression antagonized GLI2 induction by TGFβ, a known activator of GLI2 in cancer cells. TGFβ reduced endogenous TFII-I binding to the INR and increased RNAPII SerP2 in the gene body. We demonstrate that this regulatory mechanism is not exclusive of GLI2. TGFβ-induced genes CCR7, TGFβ1 and EGR3 showed similar decreased TFII-I and NELF-A INR binding and increased RNAPII SerP2 in the gene body post-TGFβ treatment. Together these results identify TFII-I as a novel repressor of a subset of TGFβ-responsive genes through the regulation of RNAPII pausing.
1,25(OH)2D3 Alleviates Aβ(25-35)-Induced Tau Hyperphosphorylation, Excessive Reactive Oxygen Species, and Apoptosis Through Interplay with Glial Cell Line-Derived Neurotrophic Factor Signaling in SH-SY5Y Cells

Amyloid beta (Aβ) accumulation in the brain is one of the major pathological features of Alzheimer’s disease. The active form of vitamin D (1,25(OH)2D3), which acts via its nuclear hormone receptor, vitamin D receptor (VDR), has been implicated in the treatment of Aβ pathology, and is thus considered as a neuroprotective agent. However, its underlying molecular mechanisms of action are not yet fully understood. Here, we aim to investigate whether the molecular mechanisms of 1,25(OH)2D3 in ameliorating Aβ toxicity involve an interplay of glial cell line-derived neurotrophic factor (GDNF)-signaling in SH-SY5Y cells. Cells were treated with Aβ(25-35) as the source of toxicity, followed by the addition of 1,25(OH)2D3 with or without the GDNF inhibitor, heparinase III. The results show that 1,25(OH)2D3 modulated Aβ-induced reactive oxygen species, apoptosis, and tau protein hyperphosphorylation in SH-SY5Y cells. Additionally, 1,25(OH)2D3 restored the decreasing GDNF and the inhibited phosphorylation of the phosphatidylinositol 3 kinase (PI3K)/protein kinase B (Akt)/glycogen synthase kinase-3β (GSK-3β) protein expressions. In the presence of heparinase III, these damaging effects evoked by Aβ were not abolished by 1,25(OH)2D3. It appears 1,25(OH)2D3 is beneficial for the alleviation of Aβ neurotoxicity, and it might elicit its neuroprotection against Aβ neurotoxicity through an interplay with GDNF-signaling.
Coughs and Sneezes: Their Role in Transmission of Respiratory Viral Infections, Including SARS-CoV-2

Coughs and sneezes disperse a large number of droplets of varying size into the environment, and they transmit respiratory viral infections by direct or indirect physical contact, by droplets or inhalation of fine particulate droplet nuclei. Larger droplets in the cloud produced by coughing and sneezing settle quickly, and the force with which they are expelled determines how far they are dispersed. The respiratory droplets evaporate to form smaller droplet nuclei that carry infectious agents, remain suspended in air, and susceptible individuals farther away from the source could inhale them. The particle size distribution within the multi-phase cloud produced by coughs/sneezes changes with time and distance from the source depending on several environmental factors. After inhalation, larger respiratory droplets are filtered by the nose or deposit in the oropharynx, whereas smaller droplet nuclei are carried by the airstream into the lungs where their site of deposition depends on their mass, size and shape and is governed by various mechanisms. Airborne particles could also be produced by various aerosol generating procedures, such as suctioning or tracheal intubation, and by aerosol generators, especially jet nebulizers. Prevention of respiratory viral infections depends upon whether they are carried in respiratory droplets or as fine droplet nuclei (airborne or aerosol transmission). The SARS-CoV-2 virus that causes COVID-19 is mainly transmitted by respiratory droplets or by contact. Airborne transmission of this virus has not been established, but is possible under special circumstances. Appropriate protective measures are necessary to prevent transmission of SARS-CoV-2 virus in various settings. This article is open access and distributed under the terms of the Creative Commons Attribution Non-Commercial No Derivatives License 4.0 (http://creativecommons.org/licenses/by-nc-nd/4.0/).
Loughborough University Institutional Repository Existence and uniqueness of relative incidence estimates in case-series analysis

Case-series analysis is used to estimate relative incidences of clinical events in defined time intervals after vaccination compared to a control period. It has advantages, in terms of both a reduction in data collection effort, because it uses only data on cases, and a reduction in the resultant variances of estimates, due to individuals being self-controlled. The existence and uniqueness of relative incidence estimates in case-series analysis are investigated. For the relative incidence of a clinical event, a simple condition for existence and uniqueness of the estimate of the parameter vector in a case-series model is established. An algorithm is developed to examine the established condition, which provides a clue for remedy when the condition for existence and uniqueness is not satisfied.
ACTIVITY OF GLYCOSIDASES FROM FRESHWATER HETEROTROPHIC MICROORGANISMS ON THE DEGRADATION OF EXTRACELLULAR POLYSACCHARIDE PRODUCED BY ANABAENA SPIROIDES (CYANOBACTERIA)

The activity of specific glycosidases during the degradation of the extracellular polysaccharide (EPS) produced by Anabaena spiroides was determined using MUF-substrates (MUF-monosaccharides). Polysaccharide degradation was found to occur in a two-phase process. The first consisted of high enzymatic activity that consumed 41% of the EPS at a relatively high rate, while the second consumed the remaining polysaccharide (59%) at a slower rate. A transition phase from the higher to the slower degradation rates was marked by a replacement of bacterial populations from coccoid to bacillus cells. During the degradation process, the bacterial biomass increased with the decrease of EPS, as revealed by bacterial cell counts. The enzymatic activity detected through the substrates MUF-a-D- and MUF-b-D-glucoside was higher than that detected by other substrates tested. The remaining glycosides were MUF-a-L-rhamnopyranoside, MUF-b-D-galactoside, MUF-a-D-mannopyranoside, MUF-b-D-fucoside, MUF-b-D-mannopyranoside, MUF-a-L-arabinopyranoside, and MUF-b-L-fucoside. The fluorescence emitted by each MUF-substrate was proportional to the concentration of the corresponding monosaccharide in A. spiroides EPS. This demonstrates the susceptibility of EPS produced by A. spiroides to enzymatic attack by bacterial populations.
Assessment of semantic memory in mild cognitive impairment: The psychometric properties of a novel semantic battery

Abstract Semantic memory is stable in healthy older adults but shows decline in mild cognitive impairment (MCI). Current measures of semantic function do not assess multiple aspects of semantic function and/or are time-consuming to administer. Here we report the psychometric properties of a battery to detect semantic impairment that we recently developed and published. Study 1 determined the face validity of the battery; interviews were conducted with five professionals with expertise in MCI and language. Face validity interviews suggested the battery appropriately assesses semantic impairments. Study 2 assessed convergent validity and reliability (inter-rater reliability, test-retest reliability, and internal consistency). Participants included 102 healthy older adults and 60 people with MCI who completed a four-task semantic battery. Results demonstrate that performance on the semantic battery correlates with traditional measures of semantic function, inter-rater reliability and internal consistency was high, and there was no significant change in mean scores between participants’ first and second testing sessions. The present findings suggest that the semantic battery is a reliable and valid assessment of semantic function. It is currently recommended for research use only.
Rebleeding and bleeding in the year following intracranial aneurysm coiling: analysis of a large prospective multicenter cohort of 1140 patients—Analysis of Recanalization after Endovascular Treatment of Intracranial Aneurysm (ARETA) Study

Background Endovascular treatment is the first line therapy for the management of ruptured and unruptured intracranial aneurysms, but delayed aneurysm rupture leading to bleeding/rebleeding can occur subsequently. ARETA (Analysis of Recanalization after Endovascular Treatment of intracranial Aneurysm) is a prospective, multicenter study conducted to analyze aneurysm recanalization. We analyzed delayed bleeding and rebleeding in this large cohort. Methods 16 neurointerventional departments prospectively enrolled patients treated for ruptured and unruptured aneurysms between December 2013 and May 2015 (ClinicalTrials.gov: NCT01942512). Participant demographics, aneurysm characteristics and endovascular techniques were recorded. Data were analyzed from participants with ruptured or unruptured aneurysms treated by coiling or balloon-assisted coiling. Rates of bleeding and rebleeding were analyzed and associated factors were studied using univariable and multivariable analyses. Results The bleeding rate was 0.0% in patients with unruptured aneurysms and 1.0% (95% CI 0.3% to 1.7%) in patients with ruptured aneurysms. In multivariate analysis, two factors were associated with rebleeding occurrence: incomplete aneurysm occlusion after initial treatment (2.0% in incomplete aneurysm occlusion vs 0.2% in complete aneurysm occlusion, OR 10.2, 95% CI 1.2 to 83.3; p=0.03) and dome-to-neck ratio (1.5±0.5 with rebleeding vs 2.2±0.9 without rebleeding, OR 0.2, 95% CI 0.04 to 0.8; p=0.03). Modalities of management of aneurysm rebleeding as well as clinical outcomes are described. Conclusions Aneurysm coiling affords good protection against bleeding (for unruptured aneurysms) and rebleeding (for ruptured aneurysms) at 1 year with rates of 0.0% and 1.0%, respectively. Aneurysm occlusion and dome-to-neck ratio are the two factors that appear to play a role in the occurrence of rebleeding.
Subband coding for sigmoidal nonlinear operations

A theory of wavelet packets is developed for nonlinear operators consisting of a composition, generalizing a sigmoidal operation, followed by convolutions with filter pairs H0 and H1. The pyramidal wavelet packet structure is defined by bit reversal trees. The reconstruction theorem, from which the original signal is obtained from frequency localized data at other nodes of the three, requires fixed point theory as well as conditions on H0 and H1 resembling those defining quadrature mirror filter pairs. Applications will be to biological systems and neural networks where such nonlinearities occur.