Miracle-dz/UniFAR-FTUs huggingface dataset:
Effects of suckling regime on lamb growth rates and milk yields of Dorset ewes

Abstract Poll Dorset ewes on a commercial sheepmilking enterprise were used in two experiments to determine the effects of restricted access of lambs to ewes on milk yield and composition, and on lamb growth rates. In Experiment 1, 75 ewes were allocated to four treatments: control (C) ewes whose lambs were artificially reared and the ewes milked twice a day; once-a-day (OAD) ewes whose lambs were artificially reared but the ewes were milked once a day; night-suckling (NS) ewes which had access to one lamb for 16 h following afternoon milking; and day-suckling (DS) ewes which had access to one lamb for 8 h following morning milkings. The NS and DS ewes were milked once a day before the lambs had access to the ewes and after weaning the ewes were milked twice a day. Total milk yields over the 91 days of milking were 141.1 ± 6.4 1 milk for C ewes and 15% (20.5 1) and 17% (24.5 1) lower for NS and DS ewes respectively. OAD ewes produced 48% less milk than C ewes over the lactation which was 15–16 days shorte.
CARDIO-RENAL METABOLIC SYNDROME AND PRO-INFLAMMATORY FACTORS: THE DIFFERENTIAL EFFECTS OF DIETARY CARBOHYDRATE AND FAT.

Background We aimed to evaluate whether a high carbohydrate or a high fat diet differs in alteration of the inflammatory and metabolic risk factors in cardio-renal metabolic syndrome in rats. Methods Twelve male Wister rats were randomly divided into two groups: one received diet 1 standard pellet rat diet (D1) containing 10% fat, 50% carbohydrate, 25% protein and another group received diet 2 (D2) containing 59% fat, 30% carbohydrate and 11% protein for 16 weeks. Weight was recorded weekly. FSG and insulin levels were measured using an enzymatic spectrophotometric and a standard ELISA kit respectively. Inflammatory parameters including TGF-β, MCP-1, TNF-α, IL-1β, IL-6 in the renal and cardiac tissues of rats were evaluated by ELISA technique. Result Food intake in D1 and D2 groups increased in the study period, however food intake in D2 group was significantly higher compared with D1 group. FSG, HOMA and TG concentrations in D2 group were significantly higher compared to D1 group. Moreover, TGF-β and MCP-1 concentrations in the renal tissues of D2 group and TNF-α in the cardiac tissues of D1 group were significantly higher compared with D1 group (P<0.05). Positive associations between IL-1β and TG and between HOMA, FSG with TGF-β and MCP-1 in the renal tissue of animals were also identified.
Large granular lymphocytes (LGL) in primary Sjögren syndrome (pSS): immunophenotype and review on the pathological role of T cells in pSS

REFERENCES 1. Rison RA, Beydoun SR. Paraproteinemic neuropathy: a practical review. BMC Neurol 2016;16:13. 2. Kelly JJ Jr, Kyle RA, O'Brien PC, Dyck PJ. Prevalence of monoclonal protein in peripheral neuropathy. Neurology 1981;31: 1480-3. 3. Jain A, Haynes R, Kothari J, Khera A, Soares M, Ramasamy K. Pathophysiology and management of monoclonal gammopathy of renal significance. Blood Adv 2019;3:2409-23. 4. Fermand JP, Bridoux F, Dispenzieri A, et al. Monoclonal gammopathy of clinical significance: a novel concept with therapeutic implications. Blood 2018;132:1478-85. 5. Nobile-Orazio E, Bianco M, Nozza A. Advances in the treatment of paraproteinemic neuropathy. Curr Treat Options Neurol 2017;19:43. 6. Dimachkie MM, Barohn RJ, Katz J. Multifocal motor neuropathy, multifocal acquired demyelinating sensory and motor neuropathy, and other chronic acquired demyelinating polyneuropathy variants. Neurol Clin 2013;31:533-55. 7. Sandes AF, de Lourdes Chauffaille M, Oliveira CR, et al. CD200 has an important role in the differential diagnosis of mature B-cell neoplasms by multiparameter flow cytometry. Cytometry B Clin Cytom 2014;86:98-105. 8. Swerdlow SH, Campo E, Harris NL, et al, eds. WHO classification of tumours of haematopoietic and lymphoid tissues. Revised 4th ed. Lyon, France: IARC Press, 2017. 9. Wang HY, Zu Y. Diagnostic algorithm of common mature B-cell lymphomas by immunohistochemistry. Arch Pathol Lab Med 2017;141:1236-46. 10. Singh G. Serum free light chain assay and / ratio performance in patients without monoclonal gammopathies: high false-positive rate. Am J Clin Pathol 2016;146:207-14. 11. Drayson M, Tang LX, Drew R, Mead GP, Carr-Smith H, Bradwell AR. Serum free light-chain measurements for identifying and monitoring patients with nonsecretory multiple myeloma. Blood 2001;97:2900-2. 12. Stübgen JP. Autoantibody-mediated sensory polyneuropathy associated with indolent B-cell non-Hodgkin’s lymphoma: a report of two cases. J Clin Neurol 2015;11:283-6. 13. Chen LY, Keddie S, Lunn MP, et al. IgM paraprotein-associated peripheral neuropathy: small CD20-positive B-cell clones may predict a monoclonal gammopathy of neurological significance and rituximab responsiveness. Br J Haematol 2020;188:511-5. 14. Briani C, Visentin A, Salvalaggio A, et al. Peripheral neuropathies in chronic lymphocytic leukemia: a single center experience on 816 patients. Haematologica 2017;102:e140-3. Large granular lymphocytes (LGL) in primary Sjögren syndrome (pSS): immunophenotype and review on the pathological role of T cells in pSS
The Use of Vertical Gill Nets in Studying Fish Depth Distribution, Horsetooth Reservoir, Colorado

Abstract The depth distribution of four fishes was studied using specially constructed vertical gill nets on Horsetooth Reservoir, Colorado (1960-61). Of several environmental factors measured, water temperature was the one factor that exerted a measurable effect. Depth of capture increased for the rainbow trout, kokanee salmon, and white sucker as each summer progressed and in general followed the isotherms. The distribution of yellow perch was unaffected by temperature changes. Kokanee salmon were most abundant in waters of 51-55° F. while the rainbow trout and white suckers were most numerous in 66-70° F. waters.
Avoiding commitment: cathemerality among primates

Cathemeral animals distribute their activity more or less uniformly between the dark and light phases of the 24-hour day. This activity pattern is quite widely observed among major mammal taxa, although the number of species involved is relatively low. Among primates, cathemerality is seen principally, though not uniquely, in the strepsirhine (“lower primate”) family Lemuridae; it is ubiquitous in the genus Eulemur, among species of which it seems to be a stable activity pattern with a history going back at least 8 – 12 million years. Nocturnal primates have visual systems that accentuate sensitivity to light over visual acuity, showing large cornea size, high rod:cone ratios and large numbers of photoreceptors relative to ganglion cells. Diurnal forms do the reverse, while Eulemur species are intermediate in these respects, suggesting substantial accommodation of the visual system to the cathemeral lifestyle. Studies of one Eulemur species have revealed that its cathemerality is underpinned by a robust endogenous circadian timing mechanism with a free-running periodicity of over 25 hours. The lemurs appear to be entrained to the 24-hour day by the light/dark cycle, plausibly with dusk as the primary zeitgeber. The causes of cathemerality have been sought in such environmental influences as predator avoidance, energy conservation, dietary quality, and interspecies feeding competition. All of these factors seem to be relevant to the cathemeral lifestyle, but none appears to be a crucial determinant. Nothing is known of the underlying neural mechanisms that facilitate the lemurs' accommodation to the extremes to which 24-hour activity exposes them.
Tumor Endothelial Cell—A Biological Tool for Translational Cancer Research

Going from bench to bedside is a simplified description of translational research, with the ultimate goal being to improve the health status of mankind. Tumor endothelial cells (TECs) perform angiogenesis to support the growth, establishment, and dissemination of tumors to distant organs. TECs have various features that distinguish them from normal endothelial cells, which include alterations in gene expression patterns, higher angiogenic and metabolic activities, and drug resistance tendencies. The special characteristics of TECs enhance the vulnerability of tumor blood vessels toward antiangiogenic therapeutic strategies. Therefore, apart from being a viable therapeutic target, TECs would act as a better mediator between the bench (i.e., angiogenesis research) and the bedside (i.e., clinical application of drugs discovered through research). Exploitation of TEC characteristics could reveal unidentified strategies of enhancing and monitoring antiangiogenic therapy in the treatment of cancer, which are discussed in this review.
Transport and survival of alginate‐encapsulated and free lux‐lac marked Pseudomonas aeruginosa UG2Lr cells in soil

Transport and survival of alginate-encapsulated and unencapsulated Pseudomonas aeruginosa UG2Lr through soil microcosms was examined. Bacterial cells encapsulated in alginate beads or mixed with soil were introduced into soil microcosms. Microbial cell survival and cell transport were monitored by destructive sampling and selective plating of the microcosms over a 9-week period. Survival rates were greatest when using encapsulated P. aeruginosa UG2Lr cells. Water flow increased microbial cell dispersal from the site of inoculation. After 3 weeks, encapsulated and free cells showed similar distribution patterns. However, after 9 weeks microbial cell distribution was more extensive throughout the soil in the encapsulated treatments under all conditions. Therefore, alginate encapsulation is a suitable method to enhance survival and distribution of microbial inocula in the soil environment.
Effect of temperature and salinity on otolith element incorporation in juvenile gray snapper Lutjanus griseus

Otolith chemistry provides one approach for identifying the relative contribution of juveniles from different nursery habitats to adult populations. The goal of this study was to validate otolith element incorporation by quantifying the relation between otolith and water element concen- trations (Sr/Ca, Mg/Ca, Mn/Ca, and Ba/Ca) as a function of differences in water temperature and salinity using juvenile gray snapper Lutjanus griseus, a reef fish that inhabits estuarine and near- shore habitats as juveniles. We investigated the effects of 20 different temperature (18, 23, 28, 33°C) and salinity (5, 15, 25, 35, 45) combinations on otolith element incorporation (partition coefficient D) in L. griseus. Temperature and salinity had significant effects on DSr but no significant effect on DMg or DMn; however, salinity had a significant effect on DBa. The broad range of temperatures and salin- ities used in the present study encompasses those occupied by juveniles in the wild and therefore provides a realistic test for using otolith chemistry to infer environmental history of individual gray snapper. Element incorporation and the effects of temperature and salinity on element incorporation differ among fish species, limiting development of generalized models aimed at predicting water chemistry from otolith chemistry. Thus, the data presented here underscore the necessity of valida- tion experiments to translate species-specific elemental signatures in otoliths.
IoT-Based Geotechnical Monitoring of Unstable Slopes for Landslide Early Warning in the Darjeeling Himalayas

In hilly areas across the world, landslides have been an increasing menace, causing loss of lives and properties. The damages instigated by landslides in the recent past call for attention from authorities for disaster risk reduction measures. Development of an effective landslide early warning system (LEWS) is an important risk reduction approach by which the authorities and public in general can be presaged about future landslide events. The Indian Himalayas are among the most landslide-prone areas in the world, and attempts have been made to determine the rainfall thresholds for possible occurrence of landslides in the region. The established thresholds proved to be effective in predicting most of the landslide events and the major drawback observed is the increased number of false alarms. For an LEWS to be successfully operational, it is obligatory to reduce the number of false alarms using physical monitoring. Therefore, to improve the efficiency of the LEWS and to make the thresholds serviceable, the slopes are monitored using a sensor network. In this study, micro-electro-mechanical systems (MEMS)-based tilt sensors and volumetric water content sensors were used to monitor the active slopes in Chibo, in the Darjeeling Himalayas. The Internet of Things (IoT)-based network uses wireless modules for communication between individual sensors to the data logger and from the data logger to an internet database. The slopes are on the banks of mountain rivulets (jhoras) known as the sinking zones of Kalimpong. The locality is highly affected by surface displacements in the monsoon season due to incessant rains and improper drainage. Real-time field monitoring for the study area is being conducted for the first time to evaluate the applicability of tilt sensors in the region. The sensors are embedded within the soil to measure the tilting angles and moisture content at shallow depths. The slopes were monitored continuously during three monsoon seasons (2017–2019), and the data from the sensors were compared with the field observations and rainfall data for the evaluation. The relationship between change in tilt rate, volumetric water content, and rainfall are explored in the study, and the records prove the significance of considering long-term rainfall conditions rather than immediate rainfall events in developing rainfall thresholds for the region.
Detecting and Monitoring Porcine Hemagglutinating Encephalomyelitis Virus, an Underresearched Betacoronavirus

There is a paucity of information concerning the ecology of porcine hemagglutinating encephalomyelitis virus (PHEV) in commercial swine herds. This study provided evidence that PHEV infection is endemic and highly prevalent in U.S. swine herds. These results raised questions for future studies regarding the impact of endemic PHEV on swine health and the mechanisms by which this virus circulates in endemically infected populations. Regardless, the availability of the validated PHEV S1 enzyme-linked immunosorbent assay (ELISA) provides the means for swine producers to detect and monitor PHEV infections, confirm prior exposure to the virus, and to evaluate the immune status of breeding herds. ABSTRACT Members of family Coronaviridae cause a variety of diseases in birds and mammals. Porcine hemagglutinating encephalomyelitis virus (PHEV), a lesser-researched coronavirus, can infect naive pigs of any age, but clinical disease is observed in pigs ≤4 weeks of age. No commercial PHEV vaccines are available, and neonatal protection from PHEV-associated disease is presumably dependent on lactogenic immunity. Although subclinical PHEV infections are thought to be common, PHEV ecology in commercial swine herds is unknown. To begin to address this gap in knowledge, a serum IgG antibody enzyme-linked immunosorbent assay (ELISA) based on the S1 protein was developed and evaluated on known-status samples and then used to estimate PHEV seroprevalence in U.S. sow herds. Assessment of the diagnostic performance of the PHEV S1 ELISA using serum samples (n = 924) collected from 7-week-old pigs (n = 84; 12 pigs per group) inoculated with PHEV, porcine epidemic diarrhea virus, transmissible gastroenteritis virus, porcine respiratory coronavirus, or porcine deltacoronavirus showed that a sample-to-positive cutoff value of ≥0.6 was both sensitive and specific, i.e., all PHEV-inoculated pigs were seropositive from days postinoculation 10 to 42, and no cross-reactivity was observed in samples from other groups. The PHEV S1 ELISA was then used to estimate PHEV seroprevalence in U.S. sow herds (19 states) using 2,756 serum samples from breeding females (>28 weeks old) on commercial farms (n = 104) with no history of PHEV-associated disease. The overall seroprevalence was 53.35% (confidence interval [CI], ±1.86%) and herd seroprevalence was 96.15% (CI, ±3.70%). IMPORTANCE There is a paucity of information concerning the ecology of porcine hemagglutinating encephalomyelitis virus (PHEV) in commercial swine herds. This study provided evidence that PHEV infection is endemic and highly prevalent in U.S. swine herds. These results raised questions for future studies regarding the impact of endemic PHEV on swine health and the mechanisms by which this virus circulates in endemically infected populations. Regardless, the availability of the validated PHEV S1 enzyme-linked immunosorbent assay (ELISA) provides the means for swine producers to detect and monitor PHEV infections, confirm prior exposure to the virus, and to evaluate the immune status of breeding herds.
Integrating Structure and Function in Conceptualizing and Assessing Pathological Traits

The Diagnostic and Statistical Manual of Mental Disorders’ (5th Edition) Alternative Model of Personality Disorders includes a dimensional trait model to describe individual differences in the manifestation of personality pathology. Empirically derived quantitative trait models of psychopathology address many of the structural problems of classical diagnostic schemes (e.g., nonbinary distributions, excessive comorbidity, and diagnostic heterogeneity). However, they are largely based on the structure of individual differences in the manifestation of psychopathology. In contrast, clinical theories of personality disorder, which are the foundation of intervention efforts, are based on the function of maladaptive behavior. This distinction is akin to the difference between morphology and physiology in the broader biological sciences. A structure-function divide in the focus of empirical and clinical work contributes to a lack of integration and difficulties with translation. Here we discuss this tension and argue for the need to bridge this divide and adopt research efforts that integrate structure and function of personality traits. Specifically, we suggest that between-person structure identifies the principal domains of functioning, but to understand dysfunction personality must be conceptualized and studied as an ensemble of contextualized dynamic processes.
Reverse Inference and Mind-Brain Identity

Acknowledgements Earlier versions of the paper were presented at two conferences: (1) The Aims of Brain Research: Scientific and Philosophical Perspectives, co-organized by the Safra Center for Brain Sciences (ELSC) and the Edelstein Center, Hebrew University, the Cohn Institute, Tel Aviv University, and the Van Leer Jerusalem Institute; (2) The Nathan Stemmer Memorial Colloquium on the Philosophy of the Science of Morality co-organized by the Edelstein Center and the Center for Moral and Political Philosophy, Hebrew University. Thanks are due to the following participants in these events for their helpful comments and suggestions: Jean-Pierre Changeux, Meir Hemmo, Eva Jablonka, Tom Polger, and Adina Roskies (first conference); David Enoch, Edouard Machery, Boaz Miller, and Chandra Sripada (second conference). In developing the main argument of the paper, we deploy some material from Sects. 2 and 3 of Levin and Aharon 2011 in a significantly revised form.
The functions of CAP superfamily proteins in mammalian fertility and disease.

BACKGROUND Members of the cysteine-rich secretory proteins (CRISPS), antigen 5 (Ag5) and pathogenesis-related 1 (Pr-1) (CAP) superfamily of proteins are found across the bacterial, fungal, plant and animal kingdoms. Although many CAP superfamily proteins remain poorly characterized, over the past decade evidence has accumulated, which provides insights into the functional roles of these proteins in various processes, including fertilization, immune defence and subversion, pathogen virulence, venom toxicology and cancer biology. OBJECTIVE AND RATIONALE The aim of this article is to summarize the current state of knowledge on CAP superfamily proteins in mammalian fertility, organismal homeostasis and disease pathogenesis. SEARCH METHODS The scientific literature search was undertaken via PubMed database on all articles published prior to November 2019. Search terms were based on following keywords: 'CAP superfamily', 'CRISP', 'Cysteine-rich secretory proteins', 'Antigen 5', 'Pathogenesis-related 1', 'male fertility', 'CAP and CTL domain containing', 'CRISPLD1', 'CRISPLD2', 'bacterial SCP', 'ion channel regulator', 'CatSper', 'PI15', 'PI16', 'CLEC', 'PRY proteins', 'ASP proteins', 'spermatogenesis', 'epididymal maturation', 'capacitation' and 'snake CRISP'. In addition to that, reference lists of primary and review article were reviewed for additional relevant publications. OUTCOMES In this review, we discuss the breadth of knowledge on CAP superfamily proteins with regards to their protein structure, biological functions and emerging significance in reproduction, health and disease. We discuss the evolution of CAP superfamily proteins from their otherwise unembellished prokaryotic predecessors into the multi-domain and neofunctionalized members found in eukaryotic organisms today. At least in part because of the rapid evolution of these proteins, many inconsistencies in nomenclature exist within the literature. As such, and in part through the use of a maximum likelihood phylogenetic analysis of the vertebrate CRISP subfamily, we have attempted to clarify this confusion, thus allowing for a comparison of orthologous protein function between species. This framework also allows the prediction of functional relevance between species based on sequence and structural conservation. WIDER IMPLICATIONS This review generates a picture of critical roles for CAP proteins in ion channel regulation, sterol and lipid binding and protease inhibition, and as ligands involved in the induction of multiple cellular processes.
Investigation of Ultrasound-Mediated Intracellular Ca2+ Oscillations in HIT-T15 Pancreatic β-Cell Line

In glucose-stimulated insulin secretion (GSIS) of pancreatic β-cells, the rise of free cytosolic Ca2+ concentration through voltage-gated calcium channels (VGCCs) triggers the exocytosis of insulin-containing granules. Recently, mechanically induced insulin secretion pathways were also reported, which utilize free cytosolic Ca2+ ions as a direct regulator of exocytosis. In this study, we aimed to investigate intracellular Ca2+ responses on the HIT-T15 pancreatic β-cell line upon low-intensity pulsed ultrasound (LIPUS) stimulation and found that ultrasound induces two distinct types of intracellular Ca2+ oscillation, fast-irregular and slow-periodic, from otherwise resting cells. Both Ca2+ patterns depend on the purinergic signaling activated by the rise of extracellular ATP or ADP concentration upon ultrasound stimulation, which facilitates the release through mechanosensitive hemichannels on the plasma membrane. Further study demonstrated that two subtypes of purinergic receptors, P2X and P2Y, are working in a competitive manner depending on the level of glucose in the cell media. The findings can serve as an essential groundwork providing an underlying mechanism for the development of a new therapeutic approach for diabetic conditions with further validation.