Miracle-dz/UniFAR-FTUs huggingface dataset:
Toward a Phage Cocktail for Tuberculosis: Susceptibility and Tuberculocidal Action of Mycobacteriophages against Diverse Mycobacterium tuberculosis Strains

Tuberculosis kills 1.5 million people each year, and resistance to commonly used antibiotics contributes to treatment failures. The therapeutic potential of bacteriophages against Mycobacterium tuberculosis offers prospects for shortening antibiotic regimens, provides new tools for treating multiple drug-resistant (MDR)-TB and extensively drug-resistant (XDR)-TB infections, and protects newly developed antibiotics against rapidly emerging resistance to them. ABSTRACT The global health burden of human tuberculosis (TB) and the widespread antibiotic resistance of its causative agent Mycobacterium tuberculosis warrant new strategies for TB control. The successful use of a bacteriophage cocktail to treat a Mycobacterium abscessus infection suggests that phages could play a role in tuberculosis therapy. To assemble a phage cocktail with optimal therapeutic potential for tuberculosis, we have explored mycobacteriophage diversity to identify phages that demonstrate tuberculocidal activity and determined the phage infection profiles for a diverse set of strains spanning the major lineages of human-adapted strains of the Mycobacterium tuberculosis complex. Using a combination of genome engineering and bacteriophage genetics, we have assembled a five-phage cocktail that minimizes the emergence of phage resistance and cross-resistance to multiple phages, and which efficiently kills the M. tuberculosis strains tested. Furthermore, these phages function without antagonizing antibiotic effectiveness, and infect both isoniazid-resistant and -sensitive strains. IMPORTANCE Tuberculosis kills 1.5 million people each year, and resistance to commonly used antibiotics contributes to treatment failures. The therapeutic potential of bacteriophages against Mycobacterium tuberculosis offers prospects for shortening antibiotic regimens, provides new tools for treating multiple drug-resistant (MDR)-TB and extensively drug-resistant (XDR)-TB infections, and protects newly developed antibiotics against rapidly emerging resistance to them. Identifying a suitable suite of phages active against diverse M. tuberculosis isolates circumvents many of the barriers to initiating clinical evaluation of phages as part of the arsenal of antituberculosis therapeutics.
Effects of metoprolol on serum inflammatory factors and myocardial ischemia in rats modeled with coronary heart disease.

OBJECTIVE This study was designed to observe the effects of metoprolol on serum inflammatory factors, cardiac function and oxidative stress response in rats modeled with coronary heart disease (CHD). METHODS Thirty clean SD rats aged 6-8 weeks were randomized into a control group (CG), treatment group (TG) and model group (MG), with 10 in each group. Rats in the CG were fed regular chow, while those in the MG and TG were fed a high-fat diet. After successful CHD modeling, those in the TG were given metoprolol every day, 10 mg/kg once a day. The effects of cardiac function indexes, myocardial injury indexes, blood lipids, inflammatory factors and oxidative stress indexes, myocardial apoptosis-related factors and apoptosis rate were observed and recorded before and after treatment. RESULTS Compared with the CG, the cardiac function indexes of the MG decreased significantly, while the myocardial injury indexes increased markedly. After metoprolol treatment, the cardiac function and myocardial injury of the TG were significantly improved. Also, the expression of serum lipid indexes in the MG increased obviously, and the hyperlipidemia in the TG was improved after metoprolol treatment. Besides, the expression of inflammatory factors in serum of the MG increased remarkably, and metoprolol could reduce the inflammatory state in rats. Furthermore, MDA in serum of the MG increased, SOD, CAT, GSH-Px decreased; revealing that metoprolol can improve oxidative stress in rats. Finally, the apoptosis rate of cardiomyocytes in the MG increased dramatically. Metoprolol treatment can reduce the apoptosis rate and improve the expression of apoptosis related proteins. CONCLUSION Metoprolol reduces the degree of myocardial injury, inhibits inflammatory reaction and oxidative stress in vivo, reduces myocardial apoptosis and improves myocardial ischemia in CHD modeled rats.
Exploring the prevalence of personality disorder and the feasibility of using the SAPAS as a screening tool for personality disorder in an emergency department in India

Background Personality disorders (PD) lead to frequent emergency department (ED) visits. Existing studies have evaluated high-risk ED populations in Western settings. PD screening tools, such as the Standardized Assessment of Personality – Abbreviated Scale (SAPAS), have thus far only been validated in Western populations. Aims This study aimed to establish the screened prevalence of PD, and to evaluate the performance of the SAPAS as a screening tool within an ED setting in India. Methods The study took place in the ED of a private multi-speciality hospital in Kolkata, India. All attendees were approached during two days per week over three months, except those who were medically unfit to participate. The SAPAS and the International Personality Disorder Examination (IPDE) were translated into Bengali and then used as screening tools for PD and as the reference standard for PD diagnosis. Results Out of 120 ED attendees approached, 97 participated (48 men and 49 women), of whom 24% met the criteria for a diagnosis of PD. A cut-off score of 4 on the SAPAS provided the best trade-off between sensitivity and specificity for detecting PD. Conclusion The prevalence of PD was similar to Western samples, and the SAPAS showed promise for use in a non-Western setting.
Correlations Between Handshape and Movement in Sign Languages

Abstract Sign language phonological parameters are somewhat analogous to phonemes in spoken language. Unlike phonemes, however, there is little linguistic literature arguing that these parameters interact at the sublexical level. This situation raises the question of whether such interaction in spoken language phonology is an artifact of the modality or whether sign language phonology has not been approached in a way that allows one to recognize sublexical parameter interaction. We present three studies in favor of the latter alternative: a shape‐drawing study with deaf signers from six countries, an online dictionary study of American Sign Language, and a study of selected lexical items across 34 sign languages. These studies show that, once iconicity is considered, handshape and movement parameters interact at the sublexical level. Thus, consideration of iconicity makes transparent similarities in grammar across both modalities, allowing us to maintain certain key findings of phonological theory as evidence of cognitive architecture.
Factors Influencing Help-Seeking Behavior in Men with Symptoms of Prostate Cancer: A Qualitative Study Using an Ecological Perspective

Abstract This qualitative study explored factors that could potentially influence help-seeking in men with symptoms of prostate cancer in Nigeria. A face-to-face interview was conducted with 27 men, between 54 and 84 years, diagnosed with prostate cancer ≤ 2 years prior to the interview. Data were analyzed using thematic framework approach. Several factors were identified and further captured as intrapersonal, interpersonal, and institutional/community level factors using an ecological perspective. These factors interact to impact negatively on the help-seeking behavior of men with symptoms of prostate cancer. These findings support the formulation of public health strategies to improve men’s help-seeking behavior in Nigeria.
Characterization and Antimicrobial Properties of Silver and Silver Oxide Nanoparticles Synthesized by Cell-Free Extract of a Mangrove-Associated Pseudomonas aeruginosa M6 Using Two Different Thermal Treatments

Synthesis of silver nanoparticles by cell-free extract (CFE) of Pseudomonas aeruginosa M6 isolated from a mangrove ecosystem was demonstrated using two physical methods, namely, boiling (conventional thermal treatment (CTT)) and microwave treatment (MWT) at pH 9. X-ray diffraction (XRD) analysis revealed the presence of smaller (10.4 nm), pure silver nanoparticles synthesized via CTT (C-NPs) and larger silver oxide nanoparticles in majority with negligible concentration of pure silver particles by MWT. Transmission electron microscopy (TEM) analysis showed that C-NPs are spherical in shape. Atomic force microscopy (AFM) analysis also confirmed the presence of large-sized, aggregated nanoparticles synthesized via MWT (M-NPs). Electrophoresis indicated the size and charge-based mobility in agarose gel (0.4%), wherein the C-NPs moved faster than M-NPs, because of their relatively smaller size. The zeta potential value of C-NPs and M-NPs was found to be −30.1 mV and −23.1 mV, respectively. Fourier transform i.
Association between oral contraceptives and serious infections: A population‐based cohort study

Oral contraceptives (OC)s are commonly used worldwide. In a recent study, we showed that the use of OCs is associated with an increased risk for neutropenia. We aimed to investigate the clinical implications of this finding by examining the infection rates of 4 serious infections before, during and after OCs.
Determination of Bromophenols in Fishery Product by GPC and GC/MS

A method for the analysis of bromophenols in fishery product was developed.The sample was acidified to make sure that all of the bromophenol compounds were converted to molecular status.The molecular bromophenol was extracted by n-hexane-ethylether,purified by GPC,acetylize by acetic anhydride,and then extracted by n-hexane and determined by GC/MS.The result indicated that all of the bromophenol compounds were finely separated on the DB-17ms column with good chromatographic peak,and the derivatization with acetic anhydride was enhanced the signal sensitivity by almost a hundred times.The detection limit is 0.3—0.5 μg/kg,with recoveries of 70.2%—102% and relative standard deviations of 5.3%—10.3%. The proposed method is applied to the analysis of bromophenol in fishery product,and it is found that the bromophenol contents are between 0.3 μg/kg and 5.0 μg/kg,among which 2,4,6-TBP has the highest level.
FIELD ANESTHESIA OF FREE-RANGING NUTRIAS (MYOCASTOR COYPUS) FOR SURGICAL REPRODUCTION CONTROL

Abstract: The nutria (Myocastor coypus), a rodent native to South America, has been introduced and has established feral populations at numerous locations in North America, Europe, and Asia. As such, the nutria is subject to research and management programs, including investigation of surgical fertility-control techniques. We evaluated the efficacy of a mixture of ketamine and medetomidine, with additional use of isoflurane and reversal with atipamezole, to provide safe, reliable anesthesia for surgical procedures under field conditions. We anesthetized 40 free-ranging nutrias between December 2018 and March 2019, in Turin, Italy, to perform surgical reproduction control techniques. We administered a ketamine and medetomidine mixture (6 mg/kg and 140 µg/kg, respectively) after trapping the animals and weighing them in the cage traps. After induction, we reweighed the rodents and performed a brief clinical examination. The times of loss of palpebral and pedal reflexes were noted. After induction of anesthesia, heart rate, respiratory rate, and percentage of oxygen saturation were monitored and recorded. Isoflurane was delivered through a face mask to 27 nutrias (70%) to maintain an adequate depth of anesthesia. Upon completion of surgery and other procedures, atipamezole was administered to the animals at doses 2.5 higher than those of medetomidine (actual dose: 366±31 µg/kg). Induction times were short (3±2 min), with the animals completely immobilized. The heart rate and respiratory rate both decreased. After administration of atipamezole, recoveries were smooth and complete. There were two deaths after higher doses of atipamezole and longer surgeries. Carprofen (4 mg/kg) was administered subcutaneously for its analgesic effects. The animals were released at the end of all the procedures. Overall, the medetomidine and ketamine mixture, with supplemental isoflurane in most instances, provided a reliable anesthesia in free-ranging nutrias, adequate for performing surgical procedures under field conditions.
Factors affecting the risk of SARS-CoV-2 transmission to anesthesiologists performing endotracheal intubation in patients with SARS-CoV-2.

BACKGROUND In this study, we estimated the predictive factors of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission in anesthesiologists performing endotracheal intubation in patients with confirmed SARS-CoV-2. METHOD We analyzed data from a survey conducted by the Chinese Society of Anesthesiology Task Force on Airway Management on endotracheal intubation in 98 patients with SARS-CoV-2 confirmed through nucleic acid testing and chest computed tomography. The multivariate logistic model with stepwise selection was used for selecting the predictive factors significantly associated with SARS-CoV-2 infection in the corresponding anesthesiologists. RESULTS SARS-CoV-2 prevalence in the corresponding anesthesiologists was 20.41% after intubation in patients with SARS-CoV-2. Univariate analysis indicated that intubation for elective treatment, intubation in an operating room or isolation ward, and routine rapid induction with continuous positive-pressure ventilation (PPV) for intubation were associated with a lower SARS-CoV-2 risk in the anesthesiologists. Multivariate analysis revealed that intubation for elective treatment was associated with a significantly decreased SARS-CoV-2 risk (adjusted odds ratio [aOR] = 0.28, 95% confidence interval [CI]: 0.14-0.68, P < 0.0001), and coughing by patients during endotracheal intubation was associated with a significantly increased SARS-CoV-2 risk (aOR = 1.70, 95% CI: 1.39-2.97, P = 0.0404) in the anesthesiologists. CONCLUSION Endotracheal intubation for elective treatments, intubation in an operating room or isolation ward, and routine rapid induction with continuous PPV for patients with confirmed SARS-CoV-2 are associated with a lower risk of SARS-CoV-2 transmission in practicing anesthesiologists, and coughing by patients during intubation increases the risk.
Water Adsorption and Decomposition on N/V-Doped Anatase TiO2 (101) Surfaces

With use of the generalized gradient approximation within density functional theory approach combined with periodic slab models, the adsorption and decomposition behaviors of water molecule on N/V-monodoped, and N–V-codoped anatase TiO2 (101) surfaces at gas ambient were studied. By optimizing the geometrical configurations of initial molecular adsorption states, transition states, and final dissociative adsorption states, the adsorption energy of each species and the reaction activation energy data on the reaction pathways were obtained. On N-doped surface, the decomposition reaction pathway of water is changed: the activation energy is reduced and the decomposition reaction is an exothermic reaction, which is favorable for the decomposition of water. On the other hand, V-doped surface is unfavorable for water decomposition. The decomposition reaction of water on the N–V-codoped surface is a structure-sensitive reaction process, i.e., it has a completely different reaction activity on the different surfa.
Gene action, genetic variation, and GWAS: A user-friendly web tool

Fisher’s partitioning of genotypic values and genetic variance is highly relevant in the current era of genome-wide association studies (GWASs). However, despite being more than a century old, a number of persistent misconceptions related to nonadditive genetic effects remain. We developed a user-friendly web tool, the Falconer ShinyApp, to show how the combination of gene action and allele frequencies at causal loci translate to genetic variance and genetic variance components for a complex trait. The app can be used to demonstrate the relationship between a SNP effect size estimated from GWAS and the variation the SNP generates in the population, i.e., how locus-specific effects lead to individual differences in traits. In addition, it can also be used to demonstrate how within and between locus interactions (dominance and epistasis, respectively) usually do not lead to a large amount of nonadditive variance relative to additive variance, and therefore, that these interactions usually do not explain individual differences in a population.
Exploring providers’ perceived barriers to utilization of antenatal and delivery services in urban and rural communities of Ebonyi state, Nigeria: A qualitative study

Objective To determine providers’ perceived barriers to utilization of antenatal and delivery services in urban and rural communities of Ebonyi state, Nigeria. Methods A descriptive exploratory study design was used. Qualitative data was collected through the use of a pre-tested interview guide. Twelve providers participated in the study in urban and rural communities of Ebonyi State, Nigeria. They included nine officers in charge of primary health centers, two Chief Nursing Officers of a tertiary health institution and mission hospital and one Medical Officer-in-charge of a General hospital. QDA Miner Lite v2.0. 6 was used in the analysis of the data. Results Most providers in urban and rural communities attributed good utilization of maternal health services to delivery of quality care. Most providers in urban linked poor utilization to poor health seeking behavior of women. In rural, poor utilization was credited to poor attitude of health workers. Few of participants (urban and rural) pointed out the neglect of primary health centers resulting in poor utilization. Most participants (urban and rural) considered ignorance as the main barrier to using health facilities for antenatal and delivery services. Another constraint identified was cost of services. Most participants attested that good provider attitude and public enlightenment will improve utilization of health facilities for antenatal and delivery care. All participants agreed on the need to involve men in matters related to maternal healthcare. Conclusions Participants were aware of values of good provider attitude and this is commendable. This combined with the finding of poor attitude of health workers necessitates that health workers should be trained on quality of care. There is need for public enlightenment on need to utilize health facilities for antenatal and delivery services. Community ownership of primary health centers especially in rural communities will enhance utilization of such facilities for maternal healthcare services and should be encouraged. Involvement of men in matters related to maternal healthcare may have a positive influence in improving maternal health in Nigeria.
The effectiveness of contact investigation among contacts of tuberculosis patients: a systematic review and meta-analysis

Background We aimed to evaluate the effectiveness of contact investigation in comparison with passive case detection alone, and estimate the yield of co-prevalent and incident tuberculosis (TB) and latent TB infection (LTBI) among contacts of patients with TB. Methods A systematic search was undertaken of studies published between 1 January 2011 and 1 October 2019 in the English language. The proportion of contacts diagnosed with co-prevalent TB, incident TB and/or LTBI was estimated. Evaluation of the effectiveness of contact investigation included randomised trials, while the yield of contact investigation (co-prevalent/incident TB and LTBI) was assessed in nonrandomised studies. Results Data were extracted from 244 studies, of which 187 studies measured the proportion of contacts diagnosed with TB disease and 135 studies measured LTBI prevalence. Individual randomised trials demonstrated that contact investigation increased TB case notification (relative risk 2.5, 95% CI 2.0–3.2) and TB case detection (OR 1.34, 95% CI 0.43–4.24) and decreased mortality (relative risk 0.6, 95% CI 0.4–0.8) and population TB prevalence (risk ratio 0.82, 95% CI 0.64–1.04). The overall pooled prevalence of TB was 3.6% (95% CI 3.3–4.0%; I2=98.9%, 181 studies). The pooled prevalence of microbiologically confirmed TB was 3.2% (95% CI 2.6–3.7%; I2=99.5%, 106 studies). The pooled incidence of TB was highest in the first year after exposure to index patients (2.0%, 95% CI 1.1–3.3%; I2=96.2%, 14 studies) and substantially lower 5 years after exposure to index patients (0.5%, 95% CI 0.3–0.9%; one study). The pooled prevalence of LTBI among contacts was 42.4% (95% CI 38.5–46.4%; I2=99.8%, 135 studies). Conclusions This systematic review and meta-analysis found that contact investigation was effective in high-burden settings. The higher pooled prevalence estimates of microbiologically confirmed TB compared with previous reviews suggests newer rapid molecular diagnostics contribute to increased case detection. Contact investigation is associated with increased case detection, reduced mortality and decreased community prevalence of TB, and resulted in a high yield of co-prevalent, incident and latent TB infection among contacts https://bit.ly/3h9jW2H
Constitutive activation of CTNNB1 results in a loss of spermatogonial stem cell activity in mice

Spermatogenesis requires that a careful balance be maintained between the self-renewal of spermatogonial stem cells (SSCs) and their commitment to the developmental pathway through which they will differentiate into spermatozoa. Recently, a series of studies employing various in vivo and in vitro models have suggested a role of the wingless-related MMTV integration site gene family/beta-catenin (WNT/CTNNB1) pathway in determining the fate of SSCs. However, conflicting data have suggested that CTNNB1 signaling may either promote SSC self-renewal or differentiation. Here, we studied the effects of sustained CTNNB1 signaling in SSCs using the Ctnnb1tm1Mmt/+; Ddx4-CreTr/+ (ΔCtnnb1) mouse model, in which a stabilized form of CTNNB1 is expressed in all germ cells. ΔCtnnb1 mice were found to have reduced testis weights and partial germ cell loss by 4 months of age. Germ cell transplantation assays showed a 49% reduction in total functional SSC numbers in 8 month-old transgenic mice. In vitro, Thy1-positive undifferentiated spermatogonia from ΔCtnnb1 mice formed 57% fewer clusters, which was associated with decreased cell proliferation. A reduction in mRNA levels of genes associated with SSC maintenance (Bcl6b, Gfra1, Plzf) and increased levels for markers associated with progenitor and differentiating spermatogonia (Kit, Rarg, Sohlh1) were detected in these cluster cells. Furthermore, RNAseq performed on these clusters revealed a network of more than 900 genes regulated by CTNNB1, indicating that CTNNB1 is an important regulator of spermatogonial fate. Together, our data support the notion that CTNNB1 signaling promotes the transition of SSCs to undifferentiated progenitor spermatogonia at the expense of their self-renewal.