Miracle-dz/UniFAR-FTUs huggingface dataset:
Tumor cell-induced platelet aggregation in vitro by human pancreatic cancer cell lines.

BACKGROUND Tumor cell-induced platelet aggregation (TCIPA) is considered to be a critical step in hematogenous metastasis. METHODS TCIPA was studied in vitro in six human pancreatic carcinoma cell lines (PC 3, PC 44, AsPC1, BxPC3, Capan2, Panc1). RESULTS Whereas all cell lines induced aggregation of washed platelets in the presence of minimal amounts of platelet-poor plasma, five cell lines also induced aggregation of platelets in platelet-rich plasma. The thrombin-antagonist hirudin inhibited TCIPA in all cell lines indicating that TCIPA is thrombin-dependent. Since pretreatment of tumor cells with phospholipase A2 or C inhibited TCIPA, the thrombin-generating activity might be confined to the tumor cell surface. Further support for a prothrombinase activity was provided by the observation that all cell lines were able to induce the aggregation of washed platelets after addition of purified coagulation factors II and V. CONCLUSIONS Pancreatic carcinoma cells are able to induce platelet aggregation via activation of thrombin. This might support metastasis in pancreatic cancer and possibly explain the incidence of thrombosis in this tumor.
Th1/Th2 cells.

A large body of evidence indicates the existence of functionally polarized CD4+ T-cell responses based on their profile of cytokine secretion. Type 1 T helper (Th1) cells produce interferon-gamma, interleukin (IL)-2, and tumour necrosis factor (TNF)-beta, which activate macrophages and are responsible for cell-mediated immunity and phagocyte-dependent protective responses. By contrast, type 2 Th (Th2) cells produce IL-4, IL-5, IL-10, and IL-13, which are responsible for strong antibody production, eosinophil activation, and inhibition of several macrophage functions, thus providing phagocyte-independent protective responses. Th1 cells mainly develop following infections by intracellular bacteria and some viruses, whereas Th2 cells predominate in response to infestations by gastrointestinal nematodes. Polarized Th1 and Th2 cells not only exhibit different functional properties, but also show the preferential expression of some activation markers and distinct transcription factors. Several mechanisms may influence the Th cell differentiation, which include the cytokine profile of "natural immunity" evoked by different offending agents, the nature of the peptide ligand, as well as the activity of some costimulatory molecules and microenvironmentally secreted hormones, in the context of the individual genetic background. In addition to playing different roles in protection, polarized Th1-type and Th2-type responses are also responsible for different types of immunopathological reactions. Th1 cells are involved in the pathogenesis of organ-specific autoimmune disorders, Crohn's disease, Helicobacter pylori-induced peptic ulcer, acute kidney allograft rejection, and unexplained recurrent abortions. In contrast, allergen-specific Th2 responses are responsible for atopic disorders in genetically susceptible individuals. Moreover, Th2 responses against still unknown antigens predominate in Omenn's syndrome, idiopathic pulmonary fibrosis, and progressive systemic sclerosis. Finally, the prevalence of Th2 responses may play some role in a more rapid evolution of human immunodeficiency virus infection to the full-blown disease. The Th1/Th2 paradigm also provides the rationale for the development of new types of vaccines against infectious agents and of novel strategies for the therapy of allergic and autoimmune disorders.
Hypothalamic regulation of sleep in rats; an experimental study.

The essential role of the nervous system in the regulation of the sleep-waking rhythm of higher animals is now widely recognized. No less a person than von Economo, however, drew attention to the fact that the phenomenon of sleep cannot be accounted for by a mere functional change of the central nervous system from its condition during the waking state. It is indeed an important fact that the function of sleep, instead of being characteristic of higher animals, is also observed in organisms which do not possess a central nervous system, and even in several vegetable species. It is therefore impossible to attribute this mysterious function to any special organ. Since all experimental work on sleep has hitherto been confined to mammals, chiefly to cats and monkeys, practically no data concerning the comparative physiology of this phenomenon are available. Nevertheless, it seems probable that during the phylogenetic development the function of sleep, together with many other mechanisms, was progressively centralized into the nervous system from which organ all changes, characteristic of sleep, were ultimately effected. This centralization proceeded so far that the alternation of wake and sleep seems to be governed in mammals by a circumscribed area of the central nervous system, capable of determining physical and psychical activities. The existence of this “centre” for the regulation of sleep is generally accepted by students of this subject.
Feeding of Dehulled-micronized Faba Bean (Vicia faba var. minor) as Substitute for Soybean Meal in Guinea Fowl Broilers: Effect on Productive Performance and Meat Quality

The present study aimed to assess the effect of dietary substitution of soybean meal (SBM) with dehulled-micronized faba bean (Vicia faba var. minor) in guinea fowl broilers on their growth traits, carcass quality, and meat fatty acids composition. In this trial, 120 day-old guinea fowl keets were randomly assigned to two treatments which were fed from hatch to 12 weeks of age. Birds were fed two wheat middlings-based diets comprising of a control treatment which contained SBM (78.3 g/kg) and a test diet containing dehulled-micronized faba bean (130 g/kg) as the main protein source. Substituting SBM with faba bean had no adverse effect on growth traits, dressing percentage, or breast and thigh muscles relative weight of the guinea fowls. Conversely, a decrease (p<0.05) of abdominal fat was found in guinea fowls fed the faba bean-diet. Breast muscle of birds fed faba bean had higher L* score (p<0.05) and water-holding capacity (p<0.05) than the SBM control diet. Meat from guinea fowls fed faba bean had less total lipids (p<0.05) and cholesterol (p<0.01), and higher concentrations of phospholipids (p<0.01). Feeding faba bean increased polyunsaturated fatty acid concentrations in breast meat and decreased the saturated fatty acid levels. Moreover, dietary faba bean improved the atherogenic and thrombogenic indexes in guinea fowl breast meat. Results indicated that substitution of SBM with faba bean meal in guinea fowl diet can improve carcass qualitative traits, enhancing also meat lipid profile without negatively affecting growth performance.
A measurement study of internet services in Jordan: A case study

Internet measurements are required to obtain statistics and insights of how applications, services and protocols are operating over the Internet. These insights and statistics are utilized to reveal operational and functional issues, predict the Internet future and propose new services and protocol to enhance Internet operation. In this work, a case study of Internet measurement in Jordan will be demonstrated. The case study aims to gain insights of the web hosting process, IP addresses, autonomous system (AS) paths and country paths between clients in Jordan and DotJO websites. To facilitate the conducted measurement process, a list of all DotJo websites has been crawled. Subsequently, trace-route, IP-to-AS and AS-to-Country processes have been utilized. Our results show that more P2P relationships have to be deployed in the country to reduce AS paths and enhance QoS. Moreover, local hosting of DotJo websites should be encouraged to enhance the ICT field in Jordan.
MAVS Coordination of Antiviral Innate Immunity

ABSTRACT RNA virus infection is sensed in the cytoplasm by the retinoic acid-inducible gene I (RIG-I)-like receptors. These proteins signal through the host adaptor protein MAVS to trigger the antiviral innate immune response. Here, we describe how MAVS subcellular localization impacts its function and the regulation underlying MAVS signaling. We propose a model to describe how the coordination of MAVS functions at the interface between the mitochondria and the mitochondrion-associated endoplasmic reticulum (ER) membrane programs antiviral signaling.
Identifying diagnostically‐relevant resting state brain functional connectivity in the ventral posterior complex via genetic data mining in autism spectrum disorder

Exome sequencing and copy number variation analyses continue to provide novel insight to the biological bases of autism spectrum disorder (ASD). The growing speed at which massive genetic data are produced causes serious lags in analysis and interpretation of the data. Thus, there is a need to develop systematic genetic data mining processes that facilitate efficient analysis of large datasets. We report a new genetic data mining system, ProcessGeneLists and integrated a list of ASD‐related genes with currently available resources in gene expression and functional connectivity of the human brain. Our data‐mining program successfully identified three primary regions of interest (ROIs) in the mouse brain: inferior colliculus, ventral posterior complex of the thalamus (VPC), and parafascicular nucleus (PFn). To understand its pathogenic relevance in ASD, we examined the resting state functional connectivity (RSFC) of the homologous ROIs in human brain with other brain regions that were previously implicated in the neuro‐psychiatric features of ASD. Among them, the RSFC of the VPC with the medial frontal gyrus (MFG) was significantly more anticorrelated, whereas the RSFC of the PN with the globus pallidus was significantly increased in children with ASD compared with healthy children. Moreover, greater values of RSFC between VPC and MFG were correlated with severity index and repetitive behaviors in children with ASD. No significant RSFC differences were detected in adults with ASD. Together, these data demonstrate the utility of our data‐mining program through identifying the aberrant connectivity of thalamo‐cortical circuits in children with ASD. Autism Res 2016, 9: 553–562. © 2015 International Society for Autism Research, Wiley Periodicals, Inc.
Observations of aminium salts in atmospheric nanoparticles and possible climatic implications

We present laboratory studies and field observations that explore the role of aminium salt formation in atmospheric nanoparticle growth. These measurements were performed using the Thermal Desorption Chemical Ionization Mass Spectrometer (TDCIMS) and Ultrafine Hygroscopicity Tandem Differential Mobility Analyzers. Laboratory measurements of alkylammonium—carboxylate salt nanoparticles show that these particles exhibit lower volatilities and only slightly lower hygroscopicities than ammonium sulfate nanoparticles. TDCIMS measurements of these aminium salts showed that the protonated amines underwent minimal decomposition during analysis, with detection sensitivities comparable to those of organic and inorganic deprotonated acids. TDCIMS observations made of a new particle formation event in an urban site in Tecamac, Mexico, clearly indicate the presence of protonated amines in 8–10 nm diameter particles accounting for about 47% of detected positive ions; 13 nm particles were hygroscopic with an average 90% RH growth factor of 1.42. Observations of a new particle formation event in a remote forested site in Hyytiälä, Finland, show the presence of aminium ions with deprotonated organic acids; 23% of the detected positive ions during this event are attributed to aminium salts while 10 nm particles had an average 90% RH growth factor of 1.27. Similar TDCIMS observations during events in Atlanta and in the vicinity of Boulder, Colorado, show that aminium salts accounted for 10–35% of detected positive ions. We conclude that aminium salts contribute significantly to nanoparticle growth and must be accounted for in models to accurately predict the impact of new particle formation on climate.
Improving Efficiency for CUDA-based Volume Rendering by Combining Segmentation and Modified Sampling Strategies

The objective of this paper is to present a speed-up method to improve the rendering speed of ray casting at the same time obtaining high-quality images. Ray casting is the most commonly used volume rendering algorithm, and suitable for parallel processing. In order to improve the efficiency of parallel processing, the latest platform-Compute Unified Device Architecture (CUDA) is used. The speed-up method uses improved workload allocation and sampling strategies according to CUDA features. To implement this method, the optimal number of segments of each ray is dynamically selected based on the change of the corresponding visual angle, and each segment is processed by a distinct thread processor. In addition, for each segment, we apply different sampling quantity and density according to the distance weight. Rendering speed results show that our method achieves an average 70% improvement in terms of speed, and even 145% increase in some special cases, compared to conventional ray casting on Graphics Processing Unit (GPU). Speed-up ratio shows that this method can effectively improve the factors that influence efficiency of rendering. Excellent rendering performance makes this method contribute to real-time 3-D reconstruction.
The ethics of using newly dead patients for teaching and practicing intubation techniques.

The clinical training of medical students, interns, and residents raises a number of ethical questions. A dilemma faced by all clinical educators is whether to permit a trainee to learn therapeutic and diagnostic procedures by practicing on patients.1 The dilemma lies in the choice between two obligations: to educate health care providers and to protect the physical and psychological integrity of patients.2 The issue of nontherapeutic interventions for training purposes or research in patients who have not given consent raises the most intriguing and controversial ethical questions.3 A common practice is the teaching and practicing of intubation skills on patients .
Integrative analysis to select cancer candidate biomarkers to targeted validation

Targeted proteomics has flourished as the method of choice for prospecting for and validating potential candidate biomarkers in many diseases. However, challenges still remain due to the lack of standardized routines that can prioritize a limited number of proteins to be further validated in human samples. To help researchers identify candidate biomarkers that best characterize their samples under study, a well-designed integrative analysis pipeline, comprising MS-based discovery, feature selection methods, clustering techniques, bioinformatic analyses and targeted approaches was performed using discovery-based proteomic data from the secretomes of three classes of human cell lines (carcinoma, melanoma and non-cancerous). Three feature selection algorithms, namely, Beta-binomial, Nearest Shrunken Centroids (NSC), and Support Vector Machine-Recursive Features Elimination (SVM-RFE), indicated a panel of 137 candidate biomarkers for carcinoma and 271 for melanoma, which were differentially abundant between the tumor classes. We further tested the strength of the pipeline in selecting candidate biomarkers by immunoblotting, human tissue microarrays, label-free targeted MS and functional experiments. In conclusion, the proposed integrative analysis was able to pre-qualify and prioritize candidate biomarkers from discovery-based proteomics to targeted MS.
Developing a User-Centred Planning Tool for Young Adults with Development Disorders: A Research-Based Teaching Project

People with development disorders, for instance autism, need structured plans to help create predictability in their daily lives. Digital plans can facilitate enhanced independency, learning, and quality of life, but existing apps are largely general purpose and lack the flexibility required by this specific but heterogeneous user group. Universal design is both a goal and a process and should be based on a holistic approach and user-centered design, interacting with the users in all stages of the development process. At Oslo and Akershus University College (HiOA) we conducted a research-based teaching project in co-operation with the Department of Neuro-habilitation at Oslo University Hospital (OUS) with two employees acting as project managers and students as developers. Three groups of Computer Science bachelor students developed digital prototypes for a planning tool for young adults with pervasive development disorders, who live either with their families or in supervised residences, and do not receive extensive public services. The students conducted the initial planning phase of the software development process, focusing on prototyping the system requirements, whilst a professional software company programmed the end solution. The goal of the project was to develop flexible and adaptive user-oriented and user-specific app solutions for tablets that can aid this diverse user group in structuring daily life, whereby, for example, photos of objects and places known to the individual user replace general pictures or drawings, and checklists can be elaborate or sparse as necessary. The three student groups worked independently of each other and created interactive working prototypes based on tests, observations and short interviews with end users (both administrators and residents) and regular user feedback from the project managers. Three very different solutions were developed that were of high enough quality that an external software company were able to continue the work and create a beta version of the app. The first phase in software development process is always challenging and time consuming. Using a research-based teaching approach allowed us to not only save time and expense in the development phase, but, importantly, allowed us to thoroughly investigate a variety of aspects of the problem to create an accessible solution, whilst leveraging our students' knowledge, competencies and creativity. The next stage will be to evaluate the beta version of the app and study its impact on the user's quality of life. Although the end solution is designed for a specific user group, the built-in flexibility of its structure and function means there is the inherent potential to open it up to all users. The universal benefit lies in the flexibility of the solution.
The molecular biology of chronic wounds and delayed healing in diabetes

Wound healing is a complicated and integrated process. Although there is some tolerance in terms of redundancy and interrelated control mechanisms, pushing beyond such limits may contribute to delayed wound healing, and in extreme cases lead to chronic wounds/ulcers and thus potentially to lower extremity amputation. Diabetes is associated with such disruption in wound healing. Research in humans and in animal models has identified a large number of changes associated with diabetes at the molecular level in delayed wound healing and to a lesser extent in chronic diabetic ulcers. Better overall understanding of these changes and how they are interrelated would allow for specifically targeted treatment, thus ensuring improved quality of life for patients and providing savings to the high costs that are associated with all aspects of chronic diabetic ulcers. This review examines the work done at the molecular level on chronic diabetic ulcers, as well as considering changes seen in diabetes in general, both in humans and animal models, that may in turn contribute to ulcer formation.
A combined low Latency and Weighted Fair Queuing based Scheduling of an input-Queued Switch

Input queuing has become dominant and popular building blocks for high speed crossbar switches with many ports and fast line rates because they require minimum speed-up of memory bandwidth. Input Queued switches with finite Virtual Output Queues guarantees QoS performance in terms of throughput and average delay. A switch performs two functions Queuing and Scheduling. Queue Management algorithm manages the size of the queues and drops packets when necessary or appropriate. Scheduling algorithms determine next packet to transfer and solves conflicts with the switching fabric. Fairness and Starvation are another two properties of IQ switches and it is analyzed in finite VOQ in this works. Fairness performs fair allocation of bandwidth among flows and prevents flows from misbehaving flows. Starvation of VOQ prevents serving High priority queue. The motivation behind this study is to schedule the HoL packets queued in finite VOQs by Framing with Low Latency Queuing (LLQ) and Weighted Fair Queueing (WFQ). This queueing technique of VOQ is measured in terms of throughput and average delay by fair allocation of bandwidth with WFQ and Starvation-free queue with LLQ.
Bovine tuberculosis in cats

SIR, – The occurrence of bovine tuberculosis (TB) in cats is well documented ([Wilesmith and Clifton-Hadley 1994][1], [Gunn-Moore and Shaw 1997][2]), and the possibility that TB in cats is the result of transmission of Mycobacterium bovis infection from wildlife or cattle has been considered
Cloning, chromosomal mapping, and regulatory properties of the human type 9 adenylyl cyclase (ADCY9).

The type 9 adenylyl cyclase (AC9) is a widely distributed adenylyl cyclase that was originally cloned from a mouse cDNA library. Here we report the cloning, chromosomal mapping, and regulatory properties of human AC9 (HGMW-approved symbol ADCY9). Although the human AC9 sequence shows 86% homology with mouse AC9, divergence at the C2a/C2b junction results in an alternative C2b amino acid sequence. In situ hybridization localized the human AC9 gene to both human and mouse chromosomes 16. AC9 mRNA is present in all tissues examined, with the highest levels found in skeletal muscle, heart, and brain. To characterize the regulatory properties of human AC9 in vivo, the enzyme was expressed in HEK-293 cells. Human AC9 is stimulated by beta-adrenergic receptor activation but is insensitive to forskolin, Ca2+ and somatostatin. In contrast to mouse AC9, the activity of human AC9 is unaffected by inhibitors of calcineurin. These data emphasize the importance of determining the regulatory properties of human adenylyl cyclases.