Miracle-dz/UniFAR-FTUs huggingface dataset:
Non-Hodgkin’s Lymphoma in the Parotid Gland Similar to Benign Lymphoepithelial Lesion: A Case Indonesian Male

Background: Primary parotid non-Hodgkin’s lymphoma (NHL) is a very rare case. Case presentation: A66-year-old Indonesian male with a complaint of a lump in front of the right ear about 1 year with a history ofpostoperative primary parotid NHL 3 years ago. Patients underwent Fine Needle Aspiration Biopsy (FNAB)examination, showing a distribution of lymphoid cells with a diverse population (benign lymphoepitheliallesion / BLL) different from the results of FNAB 3 years ago. The patient underwent a right superficialparotidectomy, and the results of the histopathological examination revealed mature lymphocyte cells mixedwith histiocytes, forming foci of the follicle in part with an active germinal center. Conclusion: NHL reportsare necessary to minimize misdiagnosis between primary parotid NHL and BLL.
Modeling of Muti-layer Far-Infrared Dryer

Abstract The heat and mass transfer models applicable to biological products at each element in a far-infrared fixed-bed dryer were established. The model was validated by comparing the simulation results with experimental data of black mushrooms (Lentinus edodes) in terms of moisture content and drying rate. The very good agreement suggests that the models for heat transfer and drying rate of biological products in the far-infrared fixed-dryer can be obtained by establishing the equations of radiation and dehydration in interspace elements. An unevenness of change in moisture content and drying rate on the same horizontal layer in the dryer was found. Thus it is necessary to take some measures to solve this nonuniformity in drying if the proposed dryer is employed.
Lifetime-based identification of single molecules

Our new developed time-correlated single photon counting electronics allows for continuous registration of time-resolved fluorescence signals in millisecond intervals. With this electronics, adapted fluorescence measurement system, we studied single molecule transitions through a focused laser beam. In our paper we present measurements on single rhodamine 6G- molecules and discuss data processing methods, using the full information of the time resolved measurement. The use of this information influences significantly the reliability of the detection of single molecule transits. Further developments and applications of this method are discussed.
Toward Efficient Scalability Benchmarking of Event-Driven Microservice Architectures at Large Scale

Over the past years, an increase in software architectures containing microservices, which process data streams of a messaging system, can be observed. We present Theodolite, a method accompanied by an open source implementation for benchmarking the scalability of such microservices as well as their em-ployed stream processing frameworks and deployment options. According to common scalability deﬁnitions, Theodolite provides detailed insights into how resource demands evolve with increasing load intensity. However, accurate and statistically rigorous insights come at the cost of long execution times, making it impracticable to execute benchmarks for large sets of systems under test. To overcome this limitation, we raise three research questions and propose a research agenda for executing scalability benchmarks more time-eﬃciently and, thus, for running scalability benchmarks at large scale.
A study of the high-pressure polymorphs of L-serine using ab initio structures and PIXEL calculations

Polymorphs of L-serine have been studied using ab initio density functional theory for pressures up to 8.1 GPa. The SIESTA code was used to perform geometry optimisations starting from the coordinates derived from high-pressure neutron powder diffraction. Between 0 and 8.1 GPa two phase transitions occur, the first of which takes place between 4.5 and 5.2 GPa and the second between 7.3 and 8.1 GPa. A change in molecular conformation occurs during the I-to-II transition, resulting in a stabilisation in intramolecular energy of 40 kJ mol−1. There is good agreement between the theoretical and experimental coordinates, and the largest root-mean-square deviation between experimental and optimised structures is 0.121 A. Analysis of the effect of pressure on the intermolecular interactions using the PIXEL method showed that none becomes significantly destabilising as the phase-I structure is compressed. It is proposed that the phase transition is driven by attainment of a more stable conformation and from the reduction in the molecular volume. The second phase transition occurs with only a small change in the hydrogen bonding pattern and no substantial difference in molecular conformation. The effect on the energies of attraction between molecules suggests that this transition is driven by the bifurcation of a short OH⋯O interaction.
Construction of a High-Density Genetic Map via Genome Resequencing and QTL Detection for Key Fiber Traits in Asiatic Cotton

Background: Asiatic cotton (Gossypium arboreum, genome A2) is one of diploid cotton species producing spinnable fibers. However, few studies on the genetic mechanism of key fiber traits of Asiatic cotton have been reported. Sequencing technology advancement and the release of Asiatic cotton genome made it possible to construct a high-density SNP genetic map and further untapped QTL detection.Results: The Asiatic cotton cultivars SXY No.1 and CSLZ were crossed to develop a recombinant inbred line (RIL) population with 189 lines. Whole genome resequencing technology was employed to construct a high-density genetic map that covered 1980.17 cM with an average distance of 0.61 cM between adjacent markers. Based on fiber quality and yield component trait data from three environments, a total of 177 QTL were identified for 8 key fiber traits explaining 5.0-37.4% of the phenotypic variance. Besides, 48 stable QTL, including 15 for upper quartile length (UQL), 18 for fiber fineness (FF), 1 for immature fiber content (IFC), 4 for fiber neps count (FNC), 3 for lint percentage (LP), 7 for seed index (SI), were detected in more than one environment.Conclusions: Using a RIL population and whole genome resequencing strategy, this study presented a high-density genetic map of G. arboreum and identified 48 stable QTL for 6 key fiber traits (UQL, FF, IFC, FNC, LP, SI). Our work laid solid foundation for subsequent fine mapping of QTL for key fiber traits and cloning of controlling genes.
Data Staining: A Method for Comparing Faithfulness of Explainers

A key desideratum when explaining any ML prediction is faithfulness : the explanation must loy-ally describe the underlying predictor. But how can one evaluate the faithfulness of methods that explain black-box models, when the ground truth rationale is unknown? To address this issue, we propose a new evaluation method, Data Staining, that trains a stained predictor ( i.e. , a model that is biased to err systematically) and evaluates the explainer’s ability to recover the stain. In contrast to previous work, our method is simple, requires no modiﬁcation of the inputs, and generalizes to a larger class of model types. Experiments on text classiﬁcation datasets with popular post-hoc explanation algorithms (including a greedy approach, LIME and SHAP) show that, despite its simplicity, the greedy explainer consistently outperformed other more complex explainers on black-box models for our selected class of stains.
Identification of phenolic acids of Pandan anggur (Sararanga sinuosa Hemsley) fruits and their potential antiglycation through molecular docking study

Vita Purnamasari1,4,*, Teti Estiasih2, Hidayat Sujuti3, Simon Bambang Widjanarko2 1Doctoral Program of Agroindustrial Technology, Faculty of Agricultural Technology, Brawijaya University, Malang, Indonesia. 2Department of Agricultural Product Technology, Faculty of Agricultural Technology, Brawijaya University, Malang, Indonesia. 3Department of Biochemistry, Faculty of Medicine, Brawijaya University, Malang, Indonesia. 4Department of Biology, Faculty of Mathematics and Natural Science, Cenderawasih University, Jayapura, Indonesia.
IMPACT OF INORGANIC AND ORGANIC SOURCES OF NUTRIENTS ON NPK UPTAKE BY AMBRETTE AND ITS POST-HARVEST SOIL NPK STATUS

The roots, leaves and seeds of ambrette are considered as valuable traditional medicines. The bitter, sweet, acrid, aromatic seeds are used as tonic and are considered to possess cooling, aphrodisiac, ophthalmic, cardiotonic, digestive, stomachiecm carminative, pectoral diuretic, stimulant, antispasmodic and deodorant properties. Crop removes nutrients continuously from soil and therefore, their replenishment though fertilizers and manures are essential. To find out the integrated effect of inorganic fertilizers, neem coated urea, enriched pressmud compost and sea weed extract on NPK uptake by ambrette and its post – harvest soil NPK status, a field investigation was carried out at Farmer’s Field Sivapuri Village, Chidambaram Taluk, Cuddalore District during Kharif, 2018. The experiment was laid out in Randomized Block Design (RBD) with eight treatments and three replications. The crop was grown to maturity with proper cultural practices. The results revealed that application of integrated application of inorganic fertilizers, neem coated urea, enriched pressmud compost and sea weed extract resulted in significantly highest NPK uptake by ambretee and influenced the post – harvest soil fertility status with respect to available NPK.
Association of Interleukin-16 rs4778889 T>C Gene Polymorphism with Cancer Risk: a Meta-analysis

Qin Lei Guangxi Medical University First A liated Hospital Zhao Jiawen Guangxi Medical University First A liated Hospital Zhao Yutong Guangxi Medical University First A liated Hospital Ma Chenjun Guangxi Medical University First A liated Hospital Li Chaobin Guangxi Medical University First A liated Hospital Cheng Jiwen Guangxi Medical University First A liated Hospital Li Chengyang (  lcy_urology@163.com ) Guangxi Medical University First A liated Hospital
Piezoelectric Properties and Domain Configurations of PZT Ceramic with NiO Addition

The effects of nickel oxide addition on the piezoelectric properties and domain configurations of lead zirconate titanate (PZT) ceramic were investigated. PZT with nickel additive having the compositions of (1-x) PZT–xNiO when x = 0, 0.02, 0.04, 0.06, 0.08, and 0.10. The piezoelectric properties (d33 ) of all ceramics were measured at room temperature using d33 meter. The domain structure was observed using piezoresponse force microscopy (PFM). From the results, it could be seen that the properties of PZT ceramic with nickel addition changed significantly with regards to the sintering temperature and nickel content.
Comments on “ Description and evaluation of aerosol in UKESM 1 and HadGEM 3-GC 3 . 1 CMIP 6 historical simulations

We document and evaluate the aerosol schemes as implemented in the physical and Earth system models, HadGEM3GC3.1 (GC3.1) and UKESM1, which are contributing to the 6th Coupled Model Intercomparison Project (CMIP6). The simulation of aerosols in the present-day period of the historical ensemble of these models is evaluated against a range of observations. Updates to the aerosol microphysics scheme are documented as well as differences in the aerosol representation between the physical and Earth system configurations. The additional Earth-system interactions included in UKESM1 leads 5 to differences in the emissions of natural aerosol sources such as dimethyl sulfide, mineral dust and organic aerosol and subsequent evolution of these species in the model. UKESM1 also includes a stratospheric-tropospheric chemistry scheme which is fully coupled to the aerosol scheme, while GC3.1 employs a simplified aerosol chemistry mechanism driven by prescribed monthly climatologies of the relevant oxidants. Overall, the simulated speciated aerosol mass concentrations compare reasonably well with observations. Both models capture the negative trend in sulfate aerosol concentrations over Europe and the 10 eastern United States of America (US) although the models tend to underestimate the sulfate concentrations in both regions. Interactive emissions of biogenic volatile organic compounds in UKESM1 lead to an improved agreement of organic aerosol
Awareness of apiculture technologies and its relationship with the income of rural women in agriculture

The meaning for apiculture is the preservation of honey bee colonies to get pure honey and helps in pollination. Apiculture is an agro-based industry and one of the prominent enterprises involving a series of 0n-farm, off-farm and industrial activities. It can provide full time employment to entire family offering high income and better standard of living. Beekeeping is a useful mean of strengthening livelihoods because it creates a variety of assets. The main focus of the study was to assess the impact of beekeeping training given by Society of facilitator and Trainer (SOFT) to females in Cuddalore district. Capacity building of rural women in beekeeping was the focus and fifteen trainees’ beekeepers were selected randomly from the district for survey to assess the impact of beekeeping in their livelihood. The analysis suggests that there are some social and cultural barriers which restrict women to go out in the fields for the management practices of beekeeping. For future selection criteria of participants have to be focused and without the involvement of male member they can’t manage this whole activity in a better way. For young females it was very difficult to handle bees, proper colony management, their supplement feeding, honey extraction, movement of hives etc. Economically, beekeeping increased keepers’ income but this ratio was very low in the targeted area. Training had to be gender based for sustaining livelihood. In nut shell, there was no positive impact of beekeeping training of rural women.
Grafted wood pulp containing quaternary ammonium group and its application in the removal of different anions from aqueous solution

Network wood pulp based on acrylonitrile (AN) has been chemically modified through different reactions to obtain group capable of anion exchange. Graft copolymerization of AN onto wood pulp was carried out by using γ-radiation 60Co. Factors affecting the grafting process, e.g., radiation dose and monomer concentration, was investigated. The chemical modification of cyano groups were carried out by reaction with ethanolamine producing oxazoline group followed by quaternization of tertiary amine by reaction with benzyl chloride producing quaternary ammonium salt. The grafted and modified wood pulp were characterized by FTIR, SEM, and TGA. Qualitative adsorption experiments were conducted to evaluate the ability of modified wood pulp to fix sulfate, phosphate, nitrate, and dichromate from aqueous solution using batch extractions. Based on the results obtained, it may be concluded that it is possible to modify chemically wood pulp containing cyano groups by different routes to use it as anion exchanger for different anions. © 2006 Wiley Periodicals, Inc. J Appl Polym Sci 103: 3120–3128, 2007
Protofilament St Supramolecular Aggregated Mut Exon 1

Huntington's disease is a progressive neurodegenerative disease caused by expansion of the polyglutamine domain in the first exon of huntingtin (HttEx1). The extent of expansion correlates with disease progression and formation of amyloid-like protein deposits within the brain. The latter display polymorphism at the microscopic level, both in cerebral tissue and in vitro. Such polymorphism can dramatically influence cytotoxicity, leading to much interest in the conditions and mechanisms that dictate the formation of polymorphs. We examine conditions that govern HttEx1 polymorphism in vitro, including concentration and the role of the non-polyglutamine flanking domains. Using electron microscopy, we observe polymorphs that differ in width and tendency for higher-order bundling. Strikingly, aggregation yields different polymorphs at low and high concentrations. Narrow filaments dominate at low concentrations that may be more relevant in vivo. We dissect the role of Nand C-terminal flanking domains using protein with the former (htt or N17) largely removed. The truncated protein is generated by trypsin cleavage of soluble HttEx1 fusion protein, which we analyze in some detail. Dye binding and solid-state NMR studies reveal changes in fibril surface characteristics and flanking domain mobility. Higher-order interactions appear facilitated by the C-terminal tail, while the polyglutamine forms an amyloid core resembling those of other polyglutamine deposits. Fibrilsurface-mediated branching, previously attributed to secondary nucleation, is reduced in absence of htt. A new model for the architecture of the HttEx1 filaments is presented and discussed in context of the assembly mechanism and biological activity. © 2020 The Author(s). Published by Elsevier Ltd. This is an open access article under the CC BY license (http:// creativecommons.org/licenses/by/4.0/).
Analysis of microstrip patch integrated with electromagnetic band gap (ebg) structure

Novel artificial electromagnetic materials, such as photonic crystals, electromagnetic bandgap (EBG) structures and double negative (DNG) materials, have attracted increasing attention in the electromagnetics community. These structures are broadly classified as metamaterials and are typically realized by periodic dielectric substrates and metallization patterns. The artificial metamaterials can be classified into two groups: (1) three dimensional volumetric structures and (2) two dimensional surface designs. The latter possesses the advantages of low profile, light weight and low fabrication cost and hence is desirable in wireless communication system.
A cross-sectional study of the phenomenology of obsessive-compulsive disorder

Obsessive-compulsive disorder (OCD) is a clinical syndromewhose hallmarks are excessive, anxiety-evoking thoughts and compulsive behaviours that are generally recognised as unreasonable, but which cause signi icant distress and impairment. Heterogeneous nature of OCD presentation makes its conceptualisation as a complicated one. Phenomenological studies are needed to understand various heterogeneity OCD. This study is intended to see various phenomenological subtypes of OCD in the local population. This is a hospitalbased cross-sectional study. Two hundred consecutive OCD patients attending psychiatry OPD analysed for the various social-demographic features and phenomenological indings. In our study, 48% of the sample had only obsessions, 19%had only compulsions, while 33%had amixed presentation, studying the subtypes, the study revealed that 36.5% of the sample who presented with fear of contamination and 11.5 % samples have an aggressive obsession and another 11.5 % samples have symmetry obsession. 28% had contamination obsessions, 9% had sexual obsessions, 7% had somatic obsessions while 9% had religious obsessions, and 6% had various types of obsessions. When compulsion was assessed, it was found to be checking 28(77.8%), cleaning 25 (69%), repeating 18(50%), counting 6(16%), ordering 4 (11%), collecting 4(11%) and miscellaneous 15(42%) when subtyped. Studying the phenomenological pattern in OCD patient would help in better understanding of the illness of the patients, it also tries to attempt the relationship between sociocultural issues and OCD. Though the neurobiology is similar in all individuals, phenomenology differs between individuals concerning gender, religion and culture.
Observations of nonlinear momentum fluxes over the inner continental shelf

Nonlinear momentum fluxes over the inner continental shelf are examined using moored observations from multiple years at two different locations in the Middle Atlantic Bight. Inner shelf dynamics are often described in terms of a linear alongshore momentum balance, dominated by frictional stresses generated at the surface and bottom. In this study, observations over the North Carolina inner shelf show that the divergence of the cross-shelf flux of alongshore momentum is often substantial relative to the wind stress during periods of strong stratification. During upwelling at this location, offshore fluxes of alongshore momentum in the surface layer partially balance the wind stress and reduce the role of the bottom stress. During downwelling, onshore fluxes of alongshore momentum reinforce the wind stress and increase the role of bottom stress. Over the New England inner shelf, nonlinear terms have less of an impact in the momentum balance and exhibit different relationships with the wind forcing. Differences between locations and time periods are explained by variations in bottom slope, latitude, vertical shear and cross-shelf exchange. Over the New England inner shelf, where moored density data are available, variations in vertical shear are explained by a combination of thermal wind balance and wind stress. An implication of this study is that cross-shelf winds can potentially influence the alongshore momentum balance over the inner shelf, in contrast with deeper locations over the middle to outer shelf.
Contentious issues related to auditory processing disorder

A number of children undergo audiometric evaluation due to suspected hearing difficulties. Yet for some, their hearing sensitivity is found to be normal (Iliadou et al., 2017; Sharma, Purdy, & Kelly, 2009). Often, these children are described by parents and teachers as having difficulties to follow several instructions or attend to a conversation, and getting distracted when background noise is present (Iliadou et al., 2017; Witton, 2010). There are also reports of these children either misunderstanding or taking longer to understand simple verbal directions, and demonstrating selective hearing (Johnson, Benson, & Seaton, 1997). These weaknesses often cause educational, vocational and social challenges (American Speech-Language-Hearing Association (ASHA), 2005; British Society of Audiology (BSA, 2007). Children exhibiting these problems could be diagnosed with Auditory Processing Disorder (APD) (American Academy of Audiology (AAA), 2010; ASHA, 2005; BSA, 2007; Iliadou et al., 2017).
Effects of the application of charred bark of Acacia mangium on the yield of maize, cowpea and peanut, and soil chemical properties in South Sumatra, Indonesia

Abstract Charred bark of Acacia mangium (bark charcoal), which is made of wood waste from pulp production, was applied as soil amendment for the cultivation of maize, cowpea and peanut to examine its effects on crop yield and soil chemical properties in South Sumatra, Indonesia. The yields of maize and peanut significantly increased after the application of bark charcoal under a fertilized condition in an infertile soil environment. In addition, increases in the root amount and colonization rate of arbuscular mycorrhizal (AM) fungi after bark charcoal application were also observed in maize. In general, the application of bark charcoal induced changes in soil chemical properties by increasing the pH value, total N and available P2O5 contents, cation exchange capacity, amounts of exchangeable cations and base saturation, and by decreasing the content of exchangeable Al3+. The amelioration of the soil chemical properties could be effective in highly weathered infertile tropical soils. The application of charcoal in agriculture is expected to lead to the formation of a carbon sink in soil and to increase crop yield because it has been suggested that charcoal is highly resistant to abiotic and biotic degradation, even in a soil environment.