Miracle-dz/UniFAR-FTUs huggingface dataset:
Ecophysiological responses to climate change in cicadas

Cicadas are large hemipteran insects characterized by unique life‐history traits, such as extraordinarily long life cycles, a subterranean/terrestrial habitat transition, xylem sap‐feeding and melodious sound production. These fascinating features of cicadas have attracted much attention in the research fields of physiology and ecology, resulting in an accumulation of knowledge about the underlying mechanisms and their adaptive significance. Although community‐level responses to recent climate change have already been documented for cicada fauna, an understanding of their causal relationships is still at the initial stages. In this review, we summarize current knowledge about environmental adaptations of cicadas to facilitate a deeper understanding of the ecophysiological consequences of climate change. We first outline the diverse responses of cicadas to environmental factors, mainly temperature, and their strategies to cope with naturally fluctuating environments. Then, we discuss the consequence of upcoming climate change by consolidating the current findings. This review highlights the fact that fitness‐relevant activities are fine‐tuned to a species‐specific temperature optimum to achieve habitat segregation among coexisting species, implying that cicada diversity is highly susceptible to climate warming. As a result of their conspicuous large bodies and species‐specific calling songs, cicadas are promising candidates for use as bioindicator species to monitor ecological impacts of climate change. We encourage future works that continuously quantify population‐ and community‐level responses to upcoming climate change, as well as unveil mechanistic links between physiological traits and ecological consequences.
A motion aftereffect from viewing other people’s gaze

Recent work suggests that our brains may generate subtle, false motion signals streaming from other people to the objects of their attention, aiding social cognition. For instance, brief exposure to static images depicting other people gazing at objects made subjects slower at detecting subsequent motion in the direction of gaze, suggesting that looking at someone else’s gaze caused a directional motion adaptation. Here we confirm, using a more stringent method, that viewing static images of another person gazing in a particular direction, at an object, produced motion aftereffects in the opposite direction. The aftereffect was manifested as a change in perceptual decision threshold for detecting left versus right motion. The effect disappeared when the person was looking away from the object. These findings suggest that the attentive gaze of others is encoded as an implied agent-to-object motion that is sufficiently robust to cause genuine motion aftereffects, though subtle enough to remain subthreshold.
Microbial Potlatch: Cell-level adaptation of leakiness of metabolites leads to resilient symbiosis among diverse cells

Microbial communities display extreme diversity, facilitated by the secretion of chemicals that can create new niches. However, it is unclear why cells often secrete even essential metabolites after evolution. By noting that cells can enhance their own growth rate by leakage of essential metabolites, we show that such leaker cells can benefit from coexistence with cells that consume the leaked chemicals in the environment. This leads to an unusual form of mutualism between “leaker” and “consumer” cells, resulting in frequency-dependent coexistence of multiple microbial species, as supported by extensive simulations. Remarkably, such symbiotic relationships generally evolve when each species adapts its leakiness to optimize its own growth rate under crowded conditions and nutrient limitations, leading to ecosystems with diverse species exchanging many metabolites with each other. In addition, such ecosystems are resilient against structural and environmental perturbations. Thus, we present a new basis for diverse, complex microbial ecosystems.
Voltage-gated calcium channels trigger spontaneous glutamate release via nanodomain coupling

Neurotransmitter release occurs either synchronously to action potentials or spontaneously, yet whether molecular machineries underlying evoked and spontaneous release are identical, especially whether voltage-gated Ca2+ channels (VGCCs) can trigger spontaneous events has been in debate. To elucidate this issue, we characterized Ca2+ dependency of miniature excitatory postsynaptic currents (mEPSCs) in autaptic cultured hippocampal neurons. We found that 58 % mEPSC frequency was dependent on extracellular Ca2+ ([Ca2+]o), and Ca2+ cooperativity of spontaneous release was comparable to that of evoked release. Moreover, most (> 90 %) of [Ca2+]o-dependent mEPSCs was attributable to VGCCs. Coupling distance between VGCCs and Ca2+ sensors was estimated as tight for both spontaneous and evoked release (~22 nm). In hippocampal slices, VGCC-dependence on spontaneous release was also observed, but to a different extent, at different areas and ages. At the calyx of Held synapses, mEPSCs showed VGCC-dependence in type 1 mature synapses where VGCCs and Ca2+ sensors are tightly coupled, but not in immature synapses. These data strongly suggest that the distance between VGCCs and Ca2+ sensors is the key factor to determine VGCC dependence of spontaneous release.
Robust multi‐objective blood glucose control in Type‐1 diabetic patient

In this study, an automatic robust multi‐objective controller has been proposed for blood glucose (BG) regulation in Type‐1 Diabetic Mellitus (T1DM) patient through subcutaneous route. The main objective of this work is to control the BG level in T1DM patient in the presence of unannounced meal disturbances and other external noises with a minimum amount of insulin infusion rate. The multi‐objective output‐feedback controller with H∞, H2 and pole‐placement constraints has been designed using linear matrix inequality technique. The designed controller for subcutaneous insulin delivery was tested on in silico adult and adolescent subjects of UVa/Padova T1DM metabolic simulator. The experimental results show that the closed‐loop system tracks the reference BG level very well and does not show any hypoglycaemia effect even during the long gap of a meal at night both for in silico adults and adolescent. In the presence of 50 gm meal disturbance, average adult experience normoglycaemia 92% of the total simulation time and hypoglycaemia 0% of total simulation time. The robustness of the controller has been tested in the presence of irregular meals and insulin pump noise and error. The controller yielded robust performance with a lesser amount of insulin infusion rate than the other designed controllers reported earlier.
Repurposing chloramphenicol acetyltransferase for a robust and efficient designer ester biosynthesis platform

Robust and efficient enzymes are essential modules for metabolic engineering and synthetic biology strategies across biological systems to engineer whole-cell biocatalysts. By condensing an acyl-CoA and an alcohol, alcohol acyltransferases (AATs) can serve as an interchangeable metabolic module for microbial biosynthesis of a diverse class of ester molecules with broad applications as flavors, fragrances, solvents, and drop-in biofuels. However, the current lack of robust and efficient AATs significantly limits their compatibility with heterologous precursor pathways and microbial hosts. Through bioprospecting and rational protein engineering, we identified and repurposed chloramphenicol acetyltransferases (CATs) from mesophilic prokaryotes to function as robust and efficient AATs compatible with at least 21 alcohol and 8 acyl-CoA substrates for microbial biosynthesis of linear, branched, saturated, unsaturated and/or aromatic esters. By plugging the best engineered CAT (CATec3 Y20F) into the gram-negative mesophilic bacterium Escherichia coli, we demonstrated that the recombinant strain could effectively convert various alcohols into desirable esters, for instance, achieving a titer of 13.9 g/L isoamyl acetate with 95% conversion by fed-batch fermentation. The recombinant E. coli was also capable of simulating the ester profile of roses with high conversion (> 97%) and titer (> 1 g/L) from fermentable sugars at 37°C. Likewise, a recombinant gram-positive, cellulolytic, thermophilic bacterium Clostridium thermocellum harboring CATec3 Y20F could produce many of these esters from recalcitrant cellulosic biomass at elevated temperatures (>50°C) due to the engineered enzyme’s remarkable thermostability. Overall, the engineered CATs can serve as a robust and efficient platform for designer ester biosynthesis from renewable and sustainable feedstocks.
The condition of coral reefs in Timor-Leste before and after the 2016–2017 marine heatwave

El Niño Southern Oscillation global coral bleaching events are increasing in frequency; however, the severity of bleaching is not geographically uniform. There were two major objectives of the present project: 1) assess the state of reefs and coral health at several sites and 2) explore water quality and climate change impacts on Timorese reefs. The impacts of climate change (principally by following coral mortality) were surveyed on coral reefs before and after the 2016–2017 underwater heatwave, using temperature loggers deployed between surveys which were compared to Coral Reef Watch (CRW) experimental virtual station sea surface temperature (SST). CRW is an important and widely used tool; however, we found the SST was significantly warmer (> 1°C) than in situ temperature during the austral summer accruing 5.79 degree heating weeks. In situ temperature showed no accumulation. Change in coral cover between surveys was attributed to reef heterogeneity. There were significant differences in coral cover, coral diversity, and nutrient concentrations between site and depth and a low prevalence of disease recorded in both years. The comparison of temperature and SST indicate that bleaching stress in Timor-Leste is potentially mitigated by seasonal and oceanographic dynamics. This is corroborated by Timor-Leste’s location within the Indonesian ThroughFlow. Timor-Leste is a climate refugium and the immediate conservation work lies in the management of localized anthropogenic impacts on coral reefs such as sedimentation and fishing.
Adjuvanted Schistosoma mansoni-Cathepsin B With Sulfated Lactosyl Archaeol Archaeosomes or AddaVax™ Provides Protection in a Pre-Clinical Schistosomiasis Model

Schistosomiasis threatens 800 million people worldwide. Chronic pathology manifests as hepatosplenomegaly, and intestinal schistosomiasis caused by Schistosoma mansoni can lead to liver fibrosis, cirrhosis, and blood in the stool. To assist the only FDA-approved drug, praziquantel, in parasite elimination, the development of a vaccine would be of high value. S. mansoni Cathepsin B (SmCB) is a well-documented vaccine target for intestinal schistosomiasis. Herein, we test the increased efficacy and immunogenicity of SmCB when combined with sulfated lactosyl archaeol (SLA) archaeosomes or AddaVax™ (a squalene based oil-in-water emulsion). Both vaccine formulations resulted in robust humoral and cell mediated immune responses. Impressively, both formulations were able to reduce parasite burden greater than 40% (WHO standard), with AddaVax™ reaching 86.8%. Additionally, SmCB with both adjuvants were able to reduce granuloma size and the amount of larval parasite hatched from feces, which would reduce transmission. Our data support SmCB as a target for S. mansoni vaccination; especially when used in an adjuvanted formulation.
No leading‐edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications

Understanding a species response to past environmental changes can help forecast how they will cope with ongoing climate changes. Harbor porpoises are widely distributed in the North Atlantic and were deeply impacted by the Pleistocene changes with the split of three sub-species. Despite major impacts of fisheries on natural populations, little is known about population connectivity and dispersal, how they reacted to the Pleistocene changes and how they will evolve in the future. Here, we used phylogenetics, population genetics, and predictive habitat modelling to investigate population structure and phylogeographic history of the North Atlantic porpoises. A total of 925 porpoises were characterized at 10 microsatellite loci and one-quarter of the mitogenome (mtDNA). A highly divergent mtDNA lineage was uncovered in one porpoise off Western Greenland, suggesting that a cryptic group may occur and could belong to a recently discovered mesopelagic ecotype off Greenland. Aside from it and the southern sub-species, spatial genetic variation showed that porpoises from both sides of the North Atlantic form a continuous system belonging to the same subspecies (Phocoena phocoena phoceona). Yet, we identified important departures from random mating and restricted intergenerational dispersal forming a highly significant isolation-by-distance (IBD) at both mtDNA and nuclear markers. A ten times stronger IBD at mtDNA compared to nuclear loci supported previous evidence of female philopatry. Together with the lack of spatial trends in genetic diversity, this IBD suggests that migration-drift equilibrium has been reached, erasing any genetic signal of a leading-edge effect that accompanied the predicted recolonization of the northern habitats freed from Pleistocene ice. These results illuminate the processes shaping porpoise population structure and provide a framework for designing conservation strategies and forecasting future population evolution.
Ferroptosis, a Regulated Neuronal Cell Death Type After Intracerebral Hemorrhage

Ferroptosis is a term that describes one form of regulated non-apoptotic cell death. It is triggered by the iron-dependent accumulation of lipid peroxides. Emerging evidence suggests a link between ferroptosis and the pathophysiological processes of neurological disorders, including stroke, degenerative diseases, neurotrauma, and cancer. Hemorrhagic stroke, also known as intracerebral hemorrhage (ICH), belongs to a devastating illness for its high level in morbidity and mortality. Currently, there are few established treatments and limited knowledge about the mechanisms of post-ICH neuronal death. The secondary brain damage after ICH is mainly attributed to oxidative stress and hemoglobin lysate, including iron, which leads to irreversible damage to neurons. Therefore, ferroptosis is becoming a common trend in research of neuronal death after ICH. Accumulative data suggest that the inhibition of ferroptosis may effectively prevent neuronal ferroptosis, thereby reducing secondary brain damage after ICH in animal models. Ferroptosis has a close relationship with oxidative damage and iron metabolism. This review reveals the pathological pathways and regulation mechanism of ferroptosis following ICH and then offers potential intervention strategies to mitigate neuron death and dysfunction after ICH.
LATE CENOZOIC VERTEBRATES FROM THE SOUTHERN PAMPEAN REGION: SYSTEMATIC AND BIO-CHRONOSTRATIGRAPHIC UPDATE

Abstract. The knowledge of the vertebrate systematics and bio-chronostratigraphy of late Cenozoic from the southwest of the Buenos Aires Province is updated. The study is focused on 12 localities that encompass the latest Miocene to the Holocene. Biochronologic units were identified and correlated to those of other areas of the Pampean Region. Farola Monte Hermoso, Bajo San Jose and Playa del Barco outstand because they yielded a large amount of fossil remains. In turn, the quarries near Grunbein allowed refining the age of “Huayquerian” faunas and their relationship with “Montehermosan” ones. The localities Cantera Seminario, Barrancas de Sarmiento, Cantera Vialidad, and Cantera Relleno Sanitario are assigned to the latest Miocene-earliest Pliocene; Farola Monte Hermoso and Las Oscuras, to the Early Pliocene; Bajo San Jose to the Middle Pleistocene; Puesto La Florida, Chacra Santo Domingo, and Garcia del Rio to the Late Pleistocene–Holocene; Playa del Barco to the Late Pleistocene; Pliocene s.l. , and Pleistocene–Holocene levels are exposed at Balneario Saldungaray. PALABRAS CLAVE. Biostratigraphy. Mammals. Late Miocene–Holocene. Buenos Aires Province. Argentina. Resumen. VERTEBRADOS DEL CENOZOICO TARDIO DEL SUDOESTE DE LA REGION PAMPEANA: ACTUALIZACION SISTEMATICA Y BIO-CRONOESTRATIGRAFICA. Se realiza una actualizacion del conocimiento de la sistematica de los vertebrados y la bio-cronoestratigrafia del Cenozoico tardio del sudoeste de la Provincia de Buenos Aires. El trabajo se enfoca en 12 localidades que abarcan desde el Mioceno mas tardio hasta el Holoceno. En ellas se identificaron unidades biocronologicas que se correlacionan con otras areas de la Region Pampeana. Se destacan Farola Monte Hermoso, Bajo San Jose y Playa del Barco como las localidades mas fosiliferas. Por su parte, las canteras cercanas a la localidad de Grunbein se destacan por permitir la aproximacion a las edades de faunas “huayquerienses” y su relacion con las “montehermosenses”. Las localidades Cantera Seminario, Barrancas de Sarmiento, Cantera Vialidad y Cantera Relleno Sanitario se asignan al Mioceno mas tardio–Plioceno mas temprano; Farola Monte Hermoso y Las Oscuras al Plioceno temprano; Bajo San Jose al Pleistoceno medio; Puesto La Florida, Chacra Santo Domingo y Garcia del Rio al Pleistoceno tardio–Holoceno; Playa del Barco al Pleistoceno tardio; en Balneario Saldungaray afloran niveles asignados al Plioceno s.l. y al Pleistoceno–Holoceno. PALABRAS CLAVE. Bioestratigrafia. Mamiferos. Mioceno Tardio–Holoceno. Provincia de Buenos Aires. Argentina.
Mitochondrial DNA lesions and copy number are strain dependent in endurance‐trained mice

In this pilot work, we selected two inbred strains that respond well to endurance training (ET) (FVB/NJ, and SJL/J strains), and two strains that respond poorly (BALB/cByJ and NZW/LacJ), to determine the effect of a standardized ET treadmill program on mitochondrial and nuclear DNA (nucDNA) integrity, and mitochondrial DNA (mtDNA) copy number. DNA was isolated from plantaris muscles (n = 37) and a gene‐specific quantitative PCR‐based assay was used to measure DNA lesions and mtDNA copy number. Mean mtDNA lesions were not different within strains in the sedentary or exercise‐trained states. However, mtDNA lesions were significantly higher in trained low‐responding NZW/LacJ mice (0.24 ± 0.06 mtDNA lesions/10 Kb) compared to high‐responding strains (mtDNA lesions/10 Kb: FVB/NJ = 0.11 ± 0.01, p = .049; SJL/J = 0.04 ± 0.02; p = .003). ET did not alter mean mtDNA copy numbers for any strain, although both sedentary and trained FVB/NJ mice had significantly higher mtDNA copies (99,890 ± 4,884 mtDNA copies) compared to low‐responding strains (mtDNA copies: BALB/cByJ = 69,744 ± 4,675; NZW/LacJ = 65,687 ± 5,180; p < .001). ET did not change nucDNA lesions for any strain, however, SJL/J had the lowest mean nucDNA lesions (3.5 ± 0.14 nucDNA lesions/6.5 Kb) compared to all other strains (nucDNA lesions/6.5 Kb: FVB/NJ = 4.4 ± 0.11; BALB/cByJ = 4.7 ± 0.09; NZW/LacJ = 4.4 ± 0.11; p < .0001). Our results demonstrate strain differences in plantaris muscle mtDNA lesions in ET mice and, independent of condition, differences in mean mtDNA copy and nucDNA lesions between strains.
A NOVEL BOOTSTRAP DBA-DEA APPROACH IN EVALUATING EFFICIENCY OF BANKS

Efficiency evaluation has long been an issue of great concern for the banking sector (financial institutions and for the banks themselves). This is particularly the case for State financial institutions which can be able to act proactively and prevent severe turbulence in the market. That is a very important task in a small market where operates a large number of banks, such as the Serbian market. The aim of paper is to present new way in calculating efficiency using data envelopment analysis (DEA), as the most widely used efficiency evaluation method. We present a novel approach in obtaining weight restrictions for DEA, based on the bootstrapping distance based analysis (DBA). Analysis was conducted on 29 banks, which have been operating in Serbia during 2010.
Analyses of intermediate products during degradation of pyrene in soil by hemoglobin-catalyzed reaction

Hemoglobin (Hb) is a member of heme-protein that can perform catalytic non-specific chain reaction in the presence of hydrogen peroxide (H2O2). Catalytic ability of Hb to degrade pyrene was demonstrated using soil contaminated with C pyrene and 10 mg pyrene /kg soil. The composition of soil was similar to previously used soil except that it had lower organic carbon content. Bench scale laboratory tests were conducted in the presence of buffer only, H2O2 only, or Hb with H2O2 for 24 h. After 24 h reaction, 0.1 and 1.3% of C pyrene in contaminated soil were mineralized with H2O2 only or Hb plus H2O2. No mineralization to 14CO2 was detected with buffer only. Approximately 12.2% of pyrene was degraded in the presence of H2O2 only while 44.0% of pyrene was degraded in the presence of Hb plus H2O2 during 24 h of catalytic reaction. When degradation intermediate products were examined, two chemicals were observed in the presence of H2O2 only while 25 chemicals were found in the presence of Hb plus H2O2. While most degradation products were simple hydrocarbons, four of the 27 chemicals had aromatic rings. However, none of these four chemicals was structurally related to pyrene. These results suggest that Hb catalytic system could be used to treat pyrene-contaminated soil as an efficient and speedy remediation technology. In addition, intermediate products generated by this system are not greatly affected by composition change in soil organic matter content.