Miracle-dz/UniFAR-FTUs huggingface dataset:
Random Regression Analysis of Calving Interval of Japanese Black Cows

Simple Summary Genetic parameters for the calving interval of Japanese Black cows were estimated by using a random regression model and a repeatability model. Legendre polynomials based on age at previous calving, ranging from 18 to 120 months, were used as sub-models for random regression analysis. The estimated heritability for the calving interval was low and was similar between the models. The estimated genetic correlation between ages was always higher than >0.8. Spearman’s rank correlation of the estimated breeding values between the two models was ≥0.97 for cows with their own records and ≥0.94 for sires of these cows. Therefore, this study supports the validity of fitting a repeatability model to the records of the calving interval of Japanese Black cows for breeding value evaluation. Our results could contribute to determining strategies for selection and management of Japanese Black cattle. Abstract We estimated genetic parameters for the calving interval of Japanese Black cows using a random regression model and a repeatability model. We analyzed 92,019 calving interval records of 36,178 cows. Pedigree data covered 390,263 individuals. Age of cow at previous calving for each record ranged from 18 to 120 months. We used up to the second-order Legendre polynomials based on age at previous calving as sub-models for random regression analysis, and assumed a constant error variance across ages. Estimated heritability was 0.12 to 0.20 with the random regression model and 0.17 with the repeatability model. With the random regression model, the estimated genetic correlation between ages was ≥0.87, and those between 24 and 36 months, 24 and 84 months, and 36 and 84 months were 0.99, 0.95, and 0.97, respectively. Spearman’s rank correlation between breeding values of 36,178 cows with their own records estimated by the random regression model with those estimated using the repeatability model was ≥0.97, and the rank correlation was ≥0.94 for 314 sires of these cows. These results support the validity of fitting a repeatability model to the records of the calving interval of Japanese Black cows for evaluation of breeding values.
Genome-Wide Association Analysis of Growth Curve Parameters in Chinese Simmental Beef Cattle

Simple Summary Complex traits that require observations over multiple time points for the same individual are called longitudinal traits. Understanding the genetic architecture of beef cattle growth cannot be limited simply to a genome-wide association study (GWAS) for body weight at any specific ages, but should be extended to a more general purpose by considering the longitudinal weight–age using a growth curve approach. We compared three nonlinear models that described the body weight data of Chinese Simmental beef cattle. The parameters of the suitable model were treated as phenotypes of single-trait GWAS and multi-trait GWAS. We identified 87 significant single nucleotide polymorphisms (SNPs) associated with body weight. Many candidate genes associated with body weight were identified which may be useful for exploring the full genetic architecture underlying growth and development traits in livestock. Abstract The objective of the present study was to perform a genome-wide association study (GWAS) for growth curve parameters using nonlinear models that fit original weight–age records. In this study, data from 808 Chinese Simmental beef cattle that were weighed at 0, 6, 12, and 18 months of age were used to fit the growth curve. The Gompertz model showed the highest coefficient of determination (R2 = 0.954). The parameters’ mature body weight (A), time-scale parameter (b), and maturity rate (K) were treated as phenotypes for single-trait GWAS and multi-trait GWAS. In total, 9, 49, and 7 significant SNPs associated with A, b, and K were identified by single-trait GWAS; 22 significant single nucleotide polymorphisms (SNPs) were identified by multi-trait GWAS. Among them, we observed several candidate genes, including PLIN3, KCNS3, TMCO1, PRKAG3, ANGPTL2, IGF-1, SHISA9, and STK3, which were previously reported to associate with growth and development. Further research for these candidate genes may be useful for exploring the full genetic architecture underlying growth and development traits in livestock.
Design of a Pharmacy Curriculum on Patient Centered Communication Skills

For delivering high quality pharmaceutical care pharmacy students need to develop the competences for patient centered communication. The aim of the article is to describe how a curriculum on patient centered communication can be designed for a pharmacy program. General educational principles for curriculum design are based on the theories of constructive alignment, self-directed learning and the self-determination theory. Other principles are paying systematic and explicit attention to skills development, learning skills in the context of the pharmacy practice and using a well-balanced system for the assessment of students’ performance. Effective educational methods for teaching communication skills are small group training sessions preferably with (simulation) patients, preceded by lectures or e-learning modules. For (formative or summative) assessment different methods can be used. The Objective Structured Clinical Exam (OSCE) is preferred for summative assessment of communication competence. The principles and educational methods are illustrated with examples from the curriculum of the master Pharmacy program of Utrecht University (The Netherlands). The topics ‘pharmaceutical consultations on prescription medicine,’ ‘pharmaceutical consultations on self-care medication’ and ‘clinical medication reviews’ are described in detail. Finally, lessons learned are shared.
Promoting Interfacial Interactions with the Addition of Lignin in Poly(Lactic Acid) Hybrid Nanocomposites

In this paper, the calorimetric response of the amorphous phase was examined in hybrid nanocomposites which were prepared thanks to a facile synthetic route, by adding reduced graphene oxide (rGO), Cloisite 30B (C30B), or multiwalled carbon nanotubes (MWCNT) to lignin-filled poly(lactic acid) (PLA). The dispersion of both lignin and nanofillers was successful, according to a field-emission scanning-electron microscopy (FESEM) analysis. Lignin alone essentially acted as a crystallization retardant for PLA, and the nanocomposites shared this feature, except when MWCNT was used as nanofiller. All systems exhibiting a curtailed crystallization also showed better thermal stability than neat PLA, as assessed from thermogravimetric measurements. As a consequence of favorable interactions between the PLA matrix, lignin, and the nanofillers, homogeneous dispersion or exfoliation was assumed in amorphous samples from the increase of the cooperative rearranging region (CRR) size, being even more remarkable when increasing the lignin content. The amorphous nanocomposites showed a signature of successful filler inclusion, since no rigid amorphous fraction (RAF) was reported at the filler/matrix interface. Finally, the nanocomposites were crystallized up to their maximum extent from the glassy state in nonisothermal conditions. Despite similar degrees of crystallinity and RAF, significant variations in the CRR size were observed among samples, revealing different levels of mobility constraining in the amorphous phase, probably linked to a filler-dimension dependence of space filling.
Using Free Computer-Assisted Language Sample Analysis to Evaluate and Set Treatment Goals for Children Who Speak African American English.

Purpose Spoken language sample analysis (LSA) is widely considered to be a critical component of assessment for child language disorders. It is our best window into a preschool child's everyday expressive communicative skills. However, historically, the process can be cumbersome, and reference values against which LSA findings can be "benchmarked" are based on surprisingly little data. Moreover, current LSA protocols potentially disadvantage speakers of nonmainstream English varieties, such as African American English (AAE), blurring the line between language difference and disorder. Method We provide a tutorial on the use of free software (Computerized Language Analysis [CLAN]) enabled by the ongoing National Institute on Deafness and Other Communication Disorders-funded "Child Language Assessment Project. " CLAN harnesses the advanced computational power of the Child Language Data Exchange System archive (www.childes.talkbank.org), with an aim to develop and test fine-grained and potentially language variety-sensitive benchmarks for a range of LSA measures. Using retrospective analysis of data from AAE-speaking children, we demonstrate how CLAN LSA can facilitate dialect-fair assessment and therapy goal setting. Results Using data originally collected to norm the Diagnostic Evaluation of Language Variation, we suggest that Developmental Sentence Scoring does not appear to bias against children who speak AAE but does identify children who have language impairment (LI). Other LSA measure scores were depressed in the group of AAE-speaking children with LI but did not consistently differentiate individual children as LI. Furthermore, CLAN software permits rapid, in-depth analysis using Developmental Sentence Scoring and the Index of Productive Syntax that can identify potential intervention targets for children with developmental language disorder.
New Haloterpenes from the Marine Red Alga Laurencia papillosa: Structure Elucidation and Biological Activity

Analysis of the air-dried marine red alga Laurencia papillosa, collected near Ras-Bakr at the Suez gulf (Red Sea) in Egypt delivered five new halogenated terpene derivatives: aplysiolic acid (1), 7-acetyl-aplysiol (2), aplysiol-7-one (3), 11,14-dihydroaplysia-5,11,14,15-tetrol (5a), and a new maneonene derivative 6, named 5-epi-maneolactone. The chemical structures of these metabolites were characterized employing spectroscopic methods, and the relative and absolute configurations were determined by comparison of experimental and ab initio-calculated NMR, NOE, ECD, and ORD data, and by X-ray diffraction of 2 and 6. The antimicrobial activities of the crude extract and compounds 1–3, 5a and 6 were studied.
The Elliptic Phase Diagram of Proteins: What is Left Out?

This review paper emphasizes the role of the changes in the thermal expansion, the heat capacity and the compressibility of protein solutions in the temperature and pressure dependence of the unfolding of proteins and some water soluble polymers. These parameters need further detailed interpretation from computer simulations in order to advance our understanding of the stability diagrams of proteins.
Lost in translation: Lack of CD4 expression due to a novel genetic defect.

CD4 expression identifies a subset of mature T-cells primarily assisting the germinal center reaction and contributing to CD8 +-T-cell and B-cell activation, functions and longevity. Herein, we present a family in which a novel variant disrupting the translation-initiation-codon of the CD4 gene resulted in complete loss of membrane and plasma soluble-CD4 in peripheral blood, lymph node, bone marrow, skin and ileum of a homozygous proband. This inherited CD4-knock-out disease illustrates the clinical and immunological features of a complete deficiency of any functional component of CD4 and its similarities and differences with other clinical models of primary or acquired loss of CD4 +-T-cells.
Comparative Transcriptome Analysis Provides New Insights into the Molecular Regulatory Mechanism of Adventitious Root Formation in Ramie (Boehmeria nivea L.)

The occurrence of adventitious roots is necessary for the survival of cuttings. In this study, comparative transcriptome analysis between two ramie (Boehmeria nivea L.) varieties with different adventitious root (AR) patterns was performed by mRNA-Seq before rooting (control, CK) and 10 days water-induced adventitious rooting (treatment, T) to reveal the regulatory mechanism of rooting. Characterization of the two ramie cultivars, Zhongzhu No 2 (Z2) and Huazhu No 4 (H4), indicated that Z2 had a high adventitious rooting rate but H4 had a low rooting rate. Twelve cDNA libraries of the two varieties were constructed, and a total of 26,723 genes were expressed. In the non-water culture condition, the number of the distinctive genes in H4 was 2.7 times of that in Z2, while in the water culture condition, the number of the distinctive genes in Z2 was nearly 2 times of that in H4. A total of 4411 and 5195 differentially expressed genes (DEGs) were identified in the comparison of H4CK vs. H4T and Z2CK vs. Z2T, respectively. After the water culture, more DEGs were upregulated in Z2, but more DEGs were downregulated in H4. Gene ontology (GO) functional analysis of the DEGs indicated that the polysaccharide metabolic process, carbohydrate metabolic process, cellular carbohydrate metabolic process, cell wall macromolecule metabolic process, and photosystem GO terms were distinctively significantly enriched in H4. Simultaneously, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that photosynthesis, photosynthesis antenna proteins, and starch and sucrose metabolism pathways were distinctively significantly enriched in H4. Moreover, KEGG analysis showed that jasmonic acid (JA) could interact with ethylene to regulate the occurrence and number of AR in Z2. This study reveals the transcriptomic divergence of two ramie varieties with high and low adventitious rooting rates, and provides insights into the molecular regulatory mechanism of AR formation in ramie.
Overdurability and Technical Wear of Materials Used in the Construction of Old Buildings

The technical maintenance of old tenement houses traditionally constructed is an ongoing problem, and will continue to be so in the coming years. The subject of the article includes old residential buildings from the turn of the XIX and XX centuries, which are a part of Wroclaw’s downtown district. They can be understood as an essential link in the process of shaping the cultural and social microenvironment of man. The ability of them to meet the multiple expectations of residents depends on the natural aging of tenement houses’ materials, the methods of their maintenance and use, and the influence of the many factors that cause their accelerated wear. The assumed durability is the main reference parameter of the changing age of the inspected tenement houses. The course of the theoretical and observed degree of the technical wear of these buildings was compared with their durability. For the age of these buildings, the technical wear should reach 100%. It was observed that in the first period of use of tenement houses, the phenomenon of “infradurability” occurs, and after exceeding a certain age—depending on the maintenance conditions of the building—the phenomenon of “overdurability” of the building occurs. It was shown that the durability of important elements of old buildings, as a parameter that was defined “a posteriori”, ranges from 153 to 177 years, and is greater than the corresponding literature values indicated “a priori”. The probability of reaching such an age of an element, in which the observed values of technical wear exceed the theoretical values, is much higher than the probability of an opposite event. A comparative analysis of the distribution functions of these probabilities indicates that the probabilities of theoretical wear values are higher than those observed in the case of the assumed literature durability of elements. There is also an inverse relationship for durability that corresponds to the age of the oldest examined elements of tenement houses.
Synthesis and Modification of Hydroxyapatite Nanofiber for Poly(Lactic Acid) Composites with Enhanced Mechanical Strength and Bioactivity

To enhance the bioactivity of poly(lactic acid) (PLA), a potential bone repair material, without the lowering of mechanical strength, hydroxyapatite (HA) was introduced in the form of nanofibers as the filler for application in spinal implant materials. HA nanofibers (HANF) with aspect ratio as high as ~100 were synthesized by controlling the starting pH of the reaction. While the tensile and flexural strength of PLA/HANF composites were enhanced compared with those of PLA resin, and were higher for the composites with HANF of higher aspect ratio. To further strengthen the composites, HANF was grafted with PLA chain to form HANF-g-PLA, which could improve the interface between the HANF and matrix PLA. PLA/HANF-g-PLA composites showed even higher tensile and flexural strength than PLA/HANF composites, apparently due to the better dispersion and interfacial adhesion. The composite containing 10 wt% HANF-g-PLA showed the flexural strength of 124 MPa, which was 25% higher than that of PLA resin. In the bioactivity test using a simulated body fluid solution, the rate and uniformity of the apatite growth were observed to be higher for the composites with HANF, and were even higher for those with HANF-g-PLA. This study suggested the possibility of using the PLA/HANF-g-PLA composite in the field of spinal implant materials.
A Francisella tularensis L,D-carboxypeptidase plays important roles in cell morphology, envelope integrity, and virulence

Francisella tularensis is a Gram-negative, intracellular bacterium that causes the zoonotic disease tularemia. Intracellular pathogens, including F. tularensis, have evolved mechanisms to survive in the harsh environment of macrophages and neutrophils, where they are exposed to cell membrane-damaging molecules. The bacterial cell wall, primarily composed of peptidoglycan (PG), maintains cell morphology, structure, and membrane integrity. Intracellular Gram-negative bacteria protect themselves from macrophage and neutrophil killing by recycling and repairing damaged PG – a process that involves over 50 different PG synthesis and recycling enzymes. Here, we identified a PG recycling enzyme, L,D-carboxypeptidase A (LdcA), of F. tularensis that is responsible for converting PG tetrapeptide stems to tripeptide stems. Unlike E. coli LdcA and most other orthologs, F. tularensis LdcA does not localize to the cytoplasm and also exhibits L,D-endopeptidase activity, converting PG pentapeptide stems to tripeptide stems. Loss of F. tularensis LdcA led to altered cell morphology and membrane integrity, as well as attenuation in a mouse pulmonary infection model and in primary and immortalized macrophages. Finally, an F. tularensis ldcA mutant protected mice against virulent Type A F. tularensis SchuS4 pulmonary challenge.
Seasonal and diurnal cycles of 0.25–2.5 µm aerosol fluxes over urban Stockholm, Sweden

Size resolved aerosol and gas fluxes were measured in Stockholm from 1 April 2008 to 15 April 2009 over both urban and green sectors. CO2 and H2O fluxes peaked in daytime for all seasons. CO2 concentrations peaked in winter. Due to vegetation influence the CO2 fluxes had different diurnal cycles and magnitude in the two sectors. In the urban sector, CO2 fluxes indicated a net source. The sector dominated by residential areas and green spaces had its highest aerosol fluxes in winter. In spring, super micrometer concentrations for both sectors were significantly higher, as were the urban sector rush hour fluxes. The submicrometer aerosol fluxes had a similar diurnal pattern with daytime maxima for all seasons. This suggests that only the super micrometer aerosol emissions are dependent on season. During spring there was a clear difference in super micrometer fluxes between wet and dry streets. Our direct flux measurements have improved the understanding of the processes behind these aerosol emissions. They support the hypothesis that the spring peak in aerosol emissions are due to road dust, produced during the winter, but not released in large quantities until the roads dry up during spring, and explain why Stockholm has problems meeting the EU directive for aerosol mass (PM10).
Treatment of the feline atopic syndrome - a systematic review.

BACKGROUND Feline allergic skin disease and asthma occur regularly in small animal practice. OBJECTIVES To provide evidence-based recommendations for small animal practitioners on the treatment of feline atopic syndrome (FAS). METHODS AND MATERIALS The authors reviewed the literature available before February 2020, prepared a detailed evidence-based literature review and made recommendations based on the evaluated evidence. RESULTS Sixty-six papers and abstracts were identified describing treatment interventions for FAS and evaluated to establish treatment recommendations. For many treatment options, the papers were retrospective, open studies or case reports. CONCLUSION AND CLINICAL RELEVANCE In this review, there was good evidence for the efficacy of systemic glucocorticoids and ciclosporin, and limited evidence for the efficacy of topical glucocorticoids, oclacitinib and allergen-specific immunotherapy in feline atopic skin syndrome. Evidence pointed to low-to-moderate efficacy for antihistamines, fatty acids and palmitoyl ethanolamide. In feline asthma, there was good evidence for the efficacy of oral and inhaled glucocorticoids, and limited evidence of moderate efficacy for allergen-specific immunotherapy. Evidence supported low-to-moderate efficacy of mesenchymal stem cells, inhaled lidocaine and oclacitinib as treatments for feline asthma. For almost all therapeutic options (with the exception of glucocorticoids and ciclosporin), more randomised controlled trials are needed.
Thermography in clinical ophthalmic oncology.

PURPOSE The aim of this study was to present our own experience with the use of thermography as a complementary method for the initial diagnosis and differentiation of intraocular tumors, as well as for the evaluation of the efficacy of treatment of intraocular melanomas. METHODS The study group comprised 37 patients with intraocular tumors, including 9 with uveal melanoma, 8 with uveal melanoma after I125 brachytherapy, 12 with a focal metastasis to the uvea, and 8 with retinal capillary hemangioblastoma. A FLIR T640 camera was used to capture images in the central point of the cornea, eye area, and orbital cavity area. RESULTS Eyes with uveal melanoma had higher temperature compared with the fellow normal eye of the patient in the range of all measured parameters in the regions of interest. In the group of patients with melanoma after unsuccessful brachytherapy, higher temperature was observed at the central point of the cornea. In patients with tumor regression, all measured parameters were lower in the affected eye. We observed lower tempe-ratures in the range of all tested parameters and areas in eyes with choroidal metastases. Eyes with diagnosed intraocular hemangioblastoma were characterized by higher parameters for the regions of interest versus eyes without this pathology. CONCLUSIONS A thermographic examination of the eye can be used as an additional first-line diagnostic tool for the differentiation of intraocular tumors. Thermography can be a helpful tool in monitoring the treatment outcome in patients with intraocular melanoma.