Miracle-dz/UniFAR-FTUs huggingface dataset:
Assessment of a daily online implanted fiducial marker‐guided prostate radiotherapy process

The aims of this study were to investigate whether intrafraction prostate motion can affect the accuracy of online prostate positioning using implanted fiducial markers and to determine the effect of prostate rotations on the accuracy of the software‐predicted set‐up correction shifts. Eleven patients were treated with implanted prostate fiducial markers and online set‐up corrections. Orthogonal electronic portal images were acquired to determine couch shifts before treatment. Verification images were also acquired during treatment to assess whether intrafraction motion had occurred. A limitation of the online image registration software is that it does not allow for in‐plane prostate rotations (evident on lateral portal images) when aligning marker positions. The accuracy of couch shifts was assessed by repeating the registration measurements with separate software that incorporates full in‐plane prostate rotations. Additional treatment time required for online positioning was also measured. For the patient group, the overall postalignment systematic prostate errors were less than 1.5 mm (1 standard deviation) in all directions (range 0.2–3.9 mm). The random prostate errors ranged from 0.8 to 3.3 mm (1 standard deviation). One patient exhibited intrafraction prostate motion, resulting in a postalignment prostate set‐up error of more than 10 mm for one fraction. In 14 of 35 fractions, the postalignment prostate set‐up error was greater than 5 mm in the anterior–posterior direction for this patient. Maximum prostate rotations measured from the lateral images varied from 2° to 20° for the patients. The differences between set‐up shifts determined by the online software without in‐plane rotations to align markers, and with rotations applied, was less than 1 mm (root mean square), with a maximum difference of 4.1 mm. Intrafraction prostate motion was found to reduce the effectiveness of the online set‐up for one of the patients. A larger study is required to determine the magnitude of this problem for the patient population. The inability in the current software to incorporate in‐plane prostate rotations is a limitation that should not introduce large errors, provided that the treatment isocentre is positioned near the centre of the prostate.
Immunoexpression of Epithelial Mesenchymal Transition Proteins E-Cadherin, β-Catenin, and N-Cadherin in Oral Squamous Cell Carcinoma

Aims. Epithelial mesenchymal transition (EMT) is a crucial process for acquisition of malignant phenotype, aggressiveness, and metastatic capacity in neoplasms. It is characterized by loss of epithelial markers and gain of mesenchymal markers. Studies on EMT and its potential association with the histological grading are sparse in oral squamous cell carcinoma (OSCC). This study aims to evaluate the expression of EMT-associated proteins—E-cadherin, β-catenin, and N-cadherin—in different grades of OSCC. Methodology. In all, 60 cases of OSCC further subdivided into 20 cases each of well-, moderately, and poorly differentiated OSCCs were stained immunohistochemically with E-cadherin, β-catenin, and N-cadherin antibodies. The differences in the expression were evaluated using χ2 and Fisher exact tests, whereas Spearman’s correlation was used to analyze the correlation between the markers. Results. A reduced E-cadherin expression noted in 40% of the OSCCs was associated with reduced β-catenin expression in 66.6% of the cases and increase in the expression of mesenchymal N-cadherin seen in 80% of cases. This expression pattern demonstrated a significant association with histological grades. A membrane to cytoplasmic shift of E-cadherin (73.3%) and β-catenin (78.3%) increased with histological grade. A negative correlation was observed with the E-cadherin and N-cadherin localization, though it did not reach statistical significance. Conclusion. OSCC tissues had high levels of EMT phenotype as compared with the normal oral mucosa. This phenotype was characterized by reduced E-cadherin and β-catenin expression and overexpression of N-cadherin. Aberrant localization of the studied proteins was a hallmark for depicting EMT.
Reflection and Transmission of Electromagnetic Waves in a Non-Stationary Medium

This paper surveys reflection and transmission of the electromagnetic waves in a nonstationary dielectric medium, moving with a uniform velocity ‘ v’ (i.e., independent of time and position). Initially, the problem was considered for both the cases when the medium was moving parallel and perpendicular to the interface, respectively. The focal point of the paper is to examine the behavior of electromagnetic wave propagation, which is normally incident to a dielectric interface that is moving with constant velocity v perpendicularly to the interface, and study the changes in various physical properties like the reflection and transmission coefficients, angles and frequencies compared to stationary medium. Moving Target Indicator (MTI) radars is one of the applications that will be discussed in order to relate the above.
Simulation of a 95 GHz two-stage three-cavity klystron oscillator

A two-stage oscillator consisting of two coupled three cavity klystrons is studied. A small-signal theory of this oscillator is developed, which predicts start-oscillation current and oscillation frequency. Results of 1-D particle-in-cell simulation of the W-band oscillator are presented. The numerical results are in good agreement with the small-signal theory. The simulations predict over 400 W output power with nearly 400 mA beam current.
Determination of amorphous content in the pharmaceutical process environment

The amorphous state has different chemical and physical properties compared with a crystalline one. Amorphous regions in an otherwise crystalline material can affect the bioavailability and the processability. On the other hand, crystalline material can function as nuclei and decrease the stability of an amorphous system. The aim of this study was to determine amorphous content in a pharmaceutical process environment using near infrared (NIR) and Raman spectroscopic techniques together with multivariate modelling tools. Milling was used as a model system for process‐induced amorphization of a crystalline starting material, α‐lactose monohydrate. In addition, the crystallization of amorphous material was studied by storing amorphous material, either amorphous lactose or trehalose, at high relative humidity conditions. The results show that both of the spectroscopic techniques combined with multivariate methods could be applied for quantitation. Preprocessing, as well as the sampling area, was found to affect the performance of the models. Standard normal variate (SNV) transformation was the best preprocessing approach and increasing the sampling area was found to improve the models. The root mean square error of prediction (RMSEP) for quantitation of amorphous lactose using NIR spectroscopy was 2.7%, when a measuring setup with a larger sampling area was used. When the sampling area was smaller, the RMSEPs for lactose and trehalose were 4.3% and 4.2%, respectively. For Raman spectroscopy, the RMSEPs were 2.3% and 2.5% for lactose and trehalose, respectively. However, for the optimal performance of a multivariate model, all the physical forms present, as well as the process environment itself, have to be taken into consideration.
Acute Compartment Syndrome: Update on Diagnosis and Treatment

&NA; Acute compartment syndrome can have disastrous consequences. Because unusual pain may be the only symptom of an impending problem, a high index of suspicion, accurate evaluation, and prophylactic treatment will allow the physician to intervene in a timely manner and prevent irreversible damage. Muscles tolerate 4 hours of ischemia well, but by 6 hours the result is uncertain; after 8 hours, the damage is irreversible. Ischemic injury begins when tissue pressure is 10 to 20 mm Hg below diastolic pressure. Therefore, fasciotomy generally should be done when tissue pressure rises past 20 mm Hg below diastolic pressure.
Excitation of rat hippocampal interneurons via modulation of endogenous agonist activity at the α7 nicotinic ACh receptor

The α7 subtype of the nicotinic acetylcholine receptor (α7 nAChR) is prominently expressed in the hippocampus where it is thought to play a role in the regulation of cognitive function. In this study, we have investigated the effects of 5‐hydroxyindole (5‐HI), a positive modulator of the α7 nAChR, on GABAergic activity in hippocampal CA1 stratum radiatum interneurons in acute rat brain slices. Superfusion of 5‐HI (100 μm) increased the mean frequency and amplitude of spontaneous IPSCs (sIPSCs). The potentiation was occluded by pretreatment of slices with: (1) a high concentration of the broad‐spectrum agonist nicotine to desensitize the α7 receptor, (2) an α7 nAChR antagonist, and (3) tetrodotoxin to block action potential firing. These results indicate that facilitation by 5‐HI was mediated by the α7 nAChR and required neuronal excitation. In contrast, 5‐HI had no effect on sIPSCs recorded in hippocampal slices from younger animals, even though the expression of functional α7 nAChRs was confirmed by agonist application experiments. In these slices, 5‐HI only enhanced sIPSCs after pretreatment with the acetylcholinesterase inhibitor Bw284c51. Taken together, our results suggest that 5‐HI facilitates GABAergic transmission via excitation of the α7 nAChR, and that this effect requires the presence of the endogenous agonist ACh in the extracellular environment of the receptor.
Adaptive Sliding-Mode Control for Nonlinear Active Suspension Vehicle Systems Using T–S Fuzzy Approach

This paper deals with the adaptive sliding-mode control problem for nonlinear active suspension systems via the Takagi-Sugeno (T-S) fuzzy approach. The varying sprung and unsprung masses, the unknown actuator nonlinearity, and the suspension performances are taken into account simultaneously, and the corresponding mathematical model is established. The T-S fuzzy system is used to describe the original nonlinear system for the control-design aim via the sector nonlinearity approach. A sufficient condition is proposed for the asymptotical stability of the designing sliding motion. An adaptive sliding-mode controller is designed to guarantee the reachability of the specified switching surface. The condition can be converted to the convex optimization problems. Simulation results for a half-vehicle active suspension model are provided to demonstrate the effectiveness of the proposed control schemes.
Rice bran oil as a potential resource for biodiesel: a review.

Biodiesel (BD) is receiving increased attention as an alternative, non-toxic, biodegradable, and renewable diesel fuel. Exploring new energy resources, such as BD fuel, is of growing importance in recent years. The main concern with BD fuel is its high price. One of the future aims in BD research is on the selection of inexpensive feedstock with high value-added byproducts. Rice bran is a by-product of rice milling that contains 15-23% lipids and a significant amount of nutraceutical compounds. Due to the presence of active lipase in the bran and the lack of economical stabilization methods, most bran is used as livestock feed or boiler fuel and most rice bran oil (RBO) produced is not of edible grade. Thus RBO is relatively an inexpensive raw material for the production of BD. The utilization of by-product such as defatted rice bran for the production of proteins, carbohydrates, phytochemical, and the isolation and purification of value added nutraceutical generated during BD production from RBO are attractive options to lower the cost of BD. Production of BD from RBO can be carried out either via in situ esterification, lipase-catalyzed esterification, acid-catalyzed or base-catalyzed reactions. A single step reaction for the conversion of RBO with high free fatty acid content into BD, via acid-catalyzed, base-catalyzed or lipase-catalyzed, fails to attain high conversion in reasonably short time. Pretreatment of crude RBO such as dewaxing/degumming is a crucial step because of its efficient methanolysis. The fatty acid composition of dewaxed/degummed RBO is similar to that of other vegetable oils, which are used as BD feedstock. Various byproducts generated from the rice bran during the production of BD and their applications are also addressed.
Structural and Biochemical Properties of Lipid Particles from the Yeast Saccharomyces cerevisiae*

The two most prominent neutral lipids of the yeast Saccharomyces cerevisiae, triacylglycerols (TAG) and steryl esters (SE), are synthesized by the two TAG synthases Dga1p and Lro1p and the two SE synthases Are1p and Are2p. In this study, we made use of a set of triple mutants with only one of these acyltransferases active to elucidate the contribution of each single enzyme to lipid particle (LP)/droplet formation. Depending on the remaining acyltransferases, LP from triple mutants contained only TAG or SE, respectively, with specific patterns of fatty acids and sterols. Biophysical investigations, however, revealed that individual neutral lipids strongly affected the internal structure of LP. SE form several ordered shells below the surface phospholipid monolayer of LP, whereas TAG are more or less randomly packed in the center of the LP. We propose that this structural arrangement of neutral lipids in LP may be important for their physiological role especially with respect to mobilization of TAG and SE reserves.
AtNUDT7, a Negative Regulator of Basal Immunity in Arabidopsis, Modulates Two Distinct Defense Response Pathways and Is Involved in Maintaining Redox Homeostasis1[C][OA]

Plants have evolved complicated regulatory systems to control immune responses. Both positive and negative signaling pathways interplay to coordinate development of a resistance response with the appropriate amplitude and duration. AtNUDT7, a Nudix domain-containing protein in Arabidopsis (Arabidopsis thaliana) that hydrolyzes nucleotide derivatives, was found to be a negative regulator of the basal defense response, and its loss-of-function mutation results in enhanced resistance to infection by Pseudomonas syringae. The nudt7 mutation does not cause a strong constitutive disease resistance phenotype, but it leads to a heightened defense response, including accelerated activation of defense-related genes that can be triggered by pathogenic and nonpathogenic microorganisms. The nudt7 mutation enhances two distinct defense response pathways: one independent of and the other dependent on NPR1 and salicylic acid accumulation. In vitro enzymatic assays revealed that ADP-ribose and NADH are preferred substrates of NUDT7, and the hydrolysis activity of NUDT7 is essential for its biological function and is sensitive to inhibition by Ca2+. Further analyses indicate that ADP-ribose is not likely the physiological substrate of NUDT7. However, the nudt7 mutation leads to perturbation of cellular redox homeostasis and a higher level of NADH in pathogen-challenged leaves. The study suggests that the alteration in cellular antioxidant status caused by the nudt7 mutation primes the cells for the amplified defense response and NUDT7 functions to modulate the defense response to prevent excessive stimulation.
Bacterial Pathogen Occurrence and Persistence in Livestock Mortality Biopiles

Properly managed biopiles can be used for slaughterhouse-residual degradation and bacterial pathogen inactivation, which otherwise represent a major health risk in the environment. Biopiles were used to dispose of slaughterhouse-residuals and determine the occurrence and persistence patterns of indicators of pathogenic bacteria. The indicator bacteria included the family Enterobacteriaceae, total coliforms, Escherichia coli, nalidixic acid-resistant E. coli, and Streptococcus fecalis. The slaughterhouse-residual biopiles remained static for 164 d in 2006 and 141 d in 2007. In biopile effluent samples, exponentially decreasing populations of the indicator bacteria were observed. Indicator bacteria presence in biopile and soil samples suggested their retention and persistence in, but not migration from, the media. Though the family Enterobacteriaceae, total coliforms, and Escherichia coli shared behavioral correlations, they exhibited different fates in all media compared to S. fecalis, which was observed to persist and re-grow. The behavior of inoculated nalidixic acid-resistant E. coli suggested that inactivation was the primary process in the biopiles. However, the biopiles constituted continual sources of the indicator bacteria due to their persistence in isolated and protected locations, and changes in dominant species. While biopiling slaughterhouse-residuals was effective to inactivate >99% (log reductions) of indicator bacteria, tertiary methods and biopiling phases should be employed to ensure inactivation of pathogenic bacteria in animal waste biopiles. The fate of bacterial indicators in this system exhibited trends not-as-yet observed for animal waste biopiling activities, which generates numerous questions for further research.
COLQ variant associated with Devon Rex and Sphynx feline hereditary myopathy

Summary Some Devon Rex and Sphynx cats have a variably progressive myopathy characterized by appendicular and axial muscle weakness, megaesophagus, pharyngeal weakness and fatigability with exercise. Muscle biopsies from affected cats demonstrated variable pathological changes ranging from dystrophic features to minimal abnormalities. Affected cats have exacerbation of weakness following anticholinesterase dosing, a clue that there is an underlying congenital myasthenic syndrome (CMS). A genome‐wide association study and whole‐genome sequencing suggested a causal variant for this entity was a c.1190G>A variant causing a cysteine to tyrosine substitution (p.Cys397Tyr) within the C‐terminal domain of collagen‐like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase (COLQ). Alpha‐dystroglycan expression, which is associated with COLQ anchorage at the motor end‐plate, has been shown to be deficient in affected cats. Eighteen affected cats were identified by genotyping, including cats from the original clinical descriptions in 1993 and subsequent publications. Eight Devon Rex and one Sphynx not associated with the study were identified as carriers, suggesting an allele frequency of ~2.0% in Devon Rex. Over 350 tested cats from other breeds did not have the variant. Characteristic clinical features and variant presence in all affected cats suggest a model for COLQ CMS. The association between the COLQ variant and this CMS affords clinicians the opportunity to confirm diagnosis via genetic testing and permits owners and breeders to identify carriers in the population. Moreover, accurate diagnosis increases available therapeutic options for affected cats based on an understanding of the pathophysiology and experience from human CMS associated with COLQ variants.
Long‐Term Stability After Regenerative Treatment of Infrabony Defects: A Retrospective Case Series

BACKGROUND This study aims to evaluate long-term stability of attachment achieved in infrabony defects (IBDs) by regenerative treatment. METHODS All patients who had received regenerative treatment for at least one IBD between 2004 and 2010 were screened for this retrospective case series. If complete examinations (plaque/gingival index, probing depth [PD], vertical clinical attachment level [CAL-V]) were available for patients at baseline and 12 months after surgery, they were invited for reexamination 60 ± 12 months after surgery. Reexamination involved testing for interleukin (IL)-1 polymorphism and counting number of supportive periodontal treatment (SPT) visits. Forty-one patients (24 males and 17 females; age, median: 62.0 years, lower/upper quartile: 49.8/68.3 years; six smokers, and 9 IL-1 positive) were included for analysis, each contributing one IBD. RESULTS Regenerative therapy resulted in significant attachment gain after 1 (median: -3 mm, lower/upper quartile: -1.5/-4 mm; P <0.001) and 5 (median: -3 mm, lower/upper quartile: -1.9/4.5 mm; P <0.001) years. The study failed to detect median change of CAL-V from 1 to 5 years after surgery (median: 0 mm; lower/upper quartile: -1/1.5 mm; P = 0.84). Multiple regression analysis identified that number of SPT visits is correlated with CAL-V gain from 1 to 5 years after surgery. IL-1 polymorphism and percentage of sites with PD >6 mm at 5-year reexamination are correlated with CAL-V loss from 1 to 5 years after surgery. CONCLUSIONS CAL-V achieved by regenerative therapy in IBDs may have retained stability over 5 years. Frequent SPT is associated with stability. IL-1 polymorphism and generalized reinfection are associated with less stability.
Virtual Technologies and Environments for Expeditionary Warfare Training (panel)

Abstract : Over the past decade, Virtual Environment (VE)-based training systems have become commonplace within the military training domain. These systems offer such benefits as small footprint, rapid reconfiguration, and enhanced training delivery. In addition, they appear to offer significant relief for a market starved for low cost training systems, and hold great potential as effective training tools. Yet, all too often the human element is taken for granted, with systems being designed to incorporate the latest technological advances, rather than focusing on enhancing the user's experience within the VE-both from a training and human factors perspective. It is precisely this shift in design philosophy, from techno centric to human centric that represents the next, greatest, challenge to developing effective VE-based training systems. Interaction with VE involves the ability of individuals to effectively perform essential perceptualsensory- motor tasks within the virtual world. More specifically, this can involve the ability to move about the VE, manipulate virtual objects, locate virtual sounds, deal appropriately with physical constraints, or perform visual tasks (i.e., discriminate colors; judge distance; search for, recognize, and estimate the size of objects). Interactive technologies include multi-modal 3D displays and input devices, real-time rendering, and distributed simulation (i.e., multiple user interaction through networked VE systems). These technologies define how the environment is portrayed and how it responds to user actions. The design, synthesis, and analysis of new interaction technologies will be based on our growing understanding of human perception and action in VEs. Tools are needed to provide a more comprehensive assessment of the quality of interaction.