Miracle-dz/UniFAR-FTUs huggingface dataset:
Kaposi's Sarcoma-Associated Herpesvirus K-Cyclin Interacts with Cdk9 and Stimulates Cdk9-Mediated Phosphorylation of p53 Tumor Suppressor

ABSTRACT K-cyclin, encoded by Kaposi's sarcoma-associated herpesvirus, has previously been demonstrated to activate cyclin-dependent kinase 6 (Cdk6) to induce the phosphorylation of various cell cycle regulators. In this study, we identified Cdk9 as a new K-cyclin-associated Cdk and showed that K-cyclin interacted with Cdk9 through its basic domain. We hypothesized that K-cyclin served as a regulatory subunit for the activity of Cdk9. Recent reports show that Cdk9 phosphorylates tumor suppressor p53, and we found that the K-cyclin/Cdk9 interaction greatly enhanced the kinase activity of Cdk9 toward p53. The phosphorylation site(s) of K-cyclin/Cdk9 kinase complexes was mapped in the transactivation domain of p53. We showed that the ectopic expression of K-cyclin led to a sustained increase of p53 phosphorylation on Ser33 in vivo, and the phosphorylation could be inhibited by a dominant negative Cdk9 mutant, dn-Cdk9. Using p53-positive U2OS and p53-null SaOS2 cells, we demonstrated that K-cyclin-induced growth arrest was associated with the presence of p53. In addition, K-cyclin-induced p53-dependent growth arrest was rescued by the dn-Cdk9- or Cdk9-specific short hairpin RNA in SaOS2 cells. Together, our findings for the first time demonstrated the interaction of K-cyclin and Cdk9 and revealed a new molecular link between K-cyclin and p53.
Two-level methods with optimal computing complexity for variational inequalities of the second kind

We introduce and analyze some two-level multiplicative and additive Schwarz methods for variational and quasi-variational inequalities of the second kind. The methods are introduced as subspace correction algorithms for problems in a reflexive Banach space. We prove that these methods are globally convergent and give, under some assumptions, error estimates. In the finite element spaces, the introduced algorithms are in fact two-level Schwarz methods. In this case we prove that the assumptions we made for the general convergence result hold, and write the convergence rate depending on the overlapping and mesh parameters. We get that our methods have an optimal convergence rate, it is almost independent of the mesh and overlapping parameters, and also, the methods have an optimal computing complexity per iteration.
Similarities in anthropometrical traits of children and their parents in a Bulgarian population

A study has been made of 36 body and 11 craniofacial measurements in a selected sample of 251 Bulgarian families, comprising parents and their children over 15 years. The mid parent‐offspring and correlation coefficients indicate that the extent of genetic determination varies considerably from one measurement to another. There is an evidence of directional dominance for three body traits and for two craniofacial traits. None of the different parent‐offspring correlations is compatible with X‐linked inheritance. A greater maternal than paternal influence is evident for biacromial diameter but a greater paternal influence is seen for head height, nose height and for ear height and breadth.
The influence of dietary salt level on water consumption, farrowing, and reproductive performance of lactating sows.

During two consecutive lactations using a switch-back design, 16 sows received a corn, cassava, barley, and soybean meal diet supplemented with either 8.5 or 1 g/kg of NaCl (.4% Na or .1% Na, respectively). The average daily water consumption during the 4-wk lactation period was greater (P < .01) for the sows fed the high-salt diet than for those fed the low-salt diet (13.9 vs 12.4 L, respectively). Urine production accounted for 27% of the water intake during lactation. This resulted in a difference during the entire lactation period of 42.2 L in water consumption (P = .07) and 11.4 L in urine production (P = .07). The Na and Cl concentrations of the urine for sows fed the high-salt diet were higher than for sows fed the low-salt diet (P < .05), but the K, Mg, P, and Ca concentrations were not influenced. The milk composition, measured at d 1, 13, and 27 of lactation, was relatively independent of the dietary salt level, except for the Cl concentration at d 1 after farrowing, which was higher (P < .05) for sows fed the high-salt diet. The moisture and ash content of the milk increased with the length of the lactation, irrespective of the diet. The increased ash content on d 13 and 27 of lactation was accounted for by the increased concentrations of P and Ca. There was no effect of dietary salt level on weight change of the sow or on the growth performance of the pigs. The interval from weaning to estrus (n = 13, t = 2.48, P = .029) was shorter for sows fed the high-salt diet than for sows fed the low-salt diet (6.2 +/- 1.0 and 12.6 +/- 3.1 d, respectively). More sows were unsuccessfully mated after receiving the low-salt diet during lactation. These results indicate that a low-salt diet for lactating sows results in lower water consumption, lower urine production, and lower Na and Cl concentrations in the urine. Milk composition, weight change of the sow, and growth performance of the pigs were not altered, but reproductive failures afterward may point to a salt deficiency during lactation.
The Power of the Positive: Revisiting Weak Coherence in Autism Spectrum Disorders

This paper reexamines Frith's original concept of weak coherence, its historical origins, recent reformulations, and alternative accounts. We suggest that the key notion of reduced global integration of information, which Frith proposed to underlie the assets in local processing, has been neglected in recent accounts of autism spectrum disorders (ASD). In fact, most paradigms used to test weak coherence conflate global and local processing, often placing them in direct trade-off, so that it is not possible to tell whether patterns of performance in ASD reflect reduced global processing, increased local processing, or both. We review the literature from typical development and ASD that may be pertinent to this distinction and examine some data from our own studies. Only once tasks are devised that measure separately the effects of reduced global processing and increased local processing will it be possible to test the on-line and developmental relations between these two aspects of “weak coherence”. Some preliminary ideas about these relationships are discussed, and suggestions are made for why disentangling two possibly independent dimensions of weak coherence may be timely and productive.
RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members

Pathogens secrete effector molecules that facilitate the infection of their hosts. A number of effectors identified in plant pathogenic Phytophthora species possess N-terminal motifs (RXLR-dEER) required for targeting these effectors into host cells. Here, we bioinformatically identify >370 candidate effector genes in each of the genomes of P. sojae and P. ramorum. A single superfamily, termed avirulence homolog (Avh) genes, accounts for most of the effectors. The Avh proteins show extensive sequence divergence but are all related and likely evolved from a common ancestor by rapid duplication and divergence. More than half of the Avh proteins contain conserved C-terminal motifs (termed W, Y, and L) that are usually arranged as a module that can be repeated up to eight times. The Avh genes belong to the most rapidly evolving part of the genome, and they are nearly always located at synteny breakpoints. The superfamily includes all experimentally identified oomycete effector and avirulence genes, and its rapid pace of evolution is consistent with a role for Avh proteins in interaction with plant hosts.
The effect of radiologic imaging studies on the risk of secondary malignancy development in patients with Hodgkin lymphoma.

PURPOSE Recently, reports have been published, which suggest that diagnostic radiologic imaging studies could play a role in the risk of secondary malignancy development in patients with cancer. The aims of our study are to calculate the average amount of accumulated radiation dose gained by means of radiologic imaging studies performed intensively in diagnosis and follow-up of patients with Hodgkin lymphoma and to evaluate whether this amount of accumulation accounts for a real risk for secondary malignancies. PATIENTS AND METHODS This study consists of 15 male patients, whose mean age was 23.67 years +/- 4.24 years. All radiologic imaging studies performed in patients with Hodgkin lymphoma were noted in detail, and average radiation dose accumulation was calculated. RESULTS Median radiation doses to which patients were subjected during a median of 14.5 months of disease duration were 85.19 mSv and 161.08 mSv according to data of the National Radiological Protection Board and Biological Effects of Ionizing Radiation VII report, respectively. The cumulative radiation dose, because of radiologic imaging studies, is 8.5-16-times greater than that of the described dose having 1 in 1,000 chance of cancer development according to Biological Effects of Ionizing Radiation VII report. Approximately, this amount is equivalent to the dose of natural background radiation received during 35-70 years. CONCLUSION Our study demonstrated that radiation dose accumulation because of radiologic imaging studies used in diagnosis, staging, and follow-up of patients with Hodgkin lymphoma was high enough to cause development of secondary malignancies. Finally, it is obvious that the radiologic imaging study policies used in follow-up of these patients should be overviewed.
Methanol Poisoning: Ocular and Neurological Manifestations

Purpose. The purpose of this study was to examine the effectiveness of ethanol and high-dose intravenous steroid for preserving vision in acute methanol poisoning. Methods. Eight cases of acute methanol poisoning presented to the emergency department. Detailed physical examination including neurological assessment was performed. Detailed ocular examinations were performed including visually evoked potential and electroretinography in indicated cases. All patients had visual symptoms. Pupillary abnormality was observed in all. Edema of the optic disc and nerve fiber layer were common fundus findings. The majority of cases were treated with methylprednisolone intravenously. Ethanol was given intravenously in four cases who presented within 48 h. Hemodialysis was performed in two cases having neurological manifestations and metabolic acidosis. Sodium bicarbonate was given to four patients. Folinic acid and multivitamins were also given to all the patients based on neurological advice. Results. Most of the patients showed a good response to the treatment. In 87.5% of the cases, improvements in visual acuity of at least two lines were noted in follow-up visits. Conclusions. Early presentation with prompt treatment has a significant role in preserving and improving visual acuity. Ethanol and high-dose intravenous methylprednisolone can be an alternative treatment with better visual outcome where fomepizole is unavailable.
C5b-9 regulates peritubular myofibroblast accumulation in experimental focal segmental glomerulosclerosis.

BACKGROUND In human focal segmental glomerulosclerosis (FSGS), the tubulointerstitial deposition of the complement (C5b-9) membrane attack complex is correlated with interstitial myofibroblast accumulation and proteinuria. Here, we hypothesized that C5b-9 formation regulates renal myofibroblast accumulation in Adriamycin nephropathy. METHODS Adriamycin nephropathy was induced in complement C6-sufficient (C6+) and C6-deficient (C6-) piebold viral glaxo (PVG) rats. Groups of animals (N= 7 to 8 each) were examined on days 21 and 42. A group of C6+ animals, injected with vehicle, served as the control group. RESULTS C6+ and C6- rats with Adriamycin nephropathy had equivalent proteinuria. C5b-9 deposition was increased and present on the apical surface of proximal tubular epithelial cells (day 21 and 42) and peritubular region (day 42 only) in C6+ rats with Adriamycin nephropathy, and absent in C6- rats. Peritubular myofibroblast accumulation increased in a time-dependent manner in C6+ proteinuric rats (control 1.2 +/- 0.4; Adriamycin nephropathy day 21 11.0 +/- 0.7; Adriamycin nephropathy day 42 19.8 +/- 1.7 cells per high power field). In C6- rats this increase was blunted by 87% and 56% on days 21 and 42, respectively (P < 0.01), and was associated with reduced interstitial extracellular matrix (ECM) deposition. Tubulointerstitial injury, tubular vimentin and interstitial monocyte accumulation were also reduced in C6- rats with Adriamycin nephropathy on day 21, but not at day 42. In contrast, the increase in periglomerular myofibroblast accumulation and glomerulosclerosis in Adriamycin nephropathy were not altered by C6 deficiency. CONCLUSION These data suggest that glomerular ultrafiltration of complement components and the intratubular formation of C5b-9 is a specific promotor of peritubular myofibroblast accumulation in FSGS.
Bacterial translocation contributes to cachexia from locally advanced gastric cancer.

BACKGROUND/AIMS Studies have indicated that cancer cachexia patients have high cytokines levels and worse prognosis and bacterial translocation can increase cytokines production. So we aimed to investigate the association of BT with cachexia and prognosis of cachectic patients. METHODOLOGY The locally advanced gastric cancer patients enrolled in this study were divided into cachectic and non-cachectic. Polymerase chain reaction was performed to detect bacterial DNA Cytokines levels were tested by enzyme-linked immunosorbent assay. Flow cytometry was used to detect immunological indicators. RESULTS BT ratio was significantly higher in cachectic patients than in non-cachectic patients and healthy volunteers (p=0.019, p=0.000). BT positive cachectic patients had significantly higher levels of IL-1a, IL-6, TNF-α and IFN-γ and worse survival than BT negative cachectic patients. The levels of CD3⁺T, CD4⁺T, NK cell and CD4⁺T /CD8⁺T in gastric cancer patients were lower as compared to healthy volunteers. The level of CD8⁺T-cell was significantly higher in gastric cancer patients than that in healthy volunteers. CONCLUSIONS This study for the first time suggested that bacterial translocation may contribute to cancer cachexia and impact prognosis of cachectic patients with locally advanced gastric cancer.
McArdle's sign in multiple sclerosis.

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Eye Surface Area and Dosage Rates for Spray Vaccination

Abstract Spray application of Mycoplasma gallisepticum (MG) vaccines is a labor- and time-saving means of mass vaccination of layer chickens. Recent assessment of spray characteristics of nozzles commonly used to apply MG vaccine in layer chicken operations has shown that the amount of respirable droplets (<5 µm) is negligible. Topical application of vaccine onto the eye surface has been suggested as a route of vaccination, but no estimates of vaccine load delivered via spray application were found in the literature. Estimates of eye surface area were developed using digital imaging; 24 layer pullets were used for analysis, and the mean eye surface area, corrected for corneal curvature, was found to be 0.609 cm2. This surface area was then used to estimate vaccine load for commercially available live MG vaccine sprayed through popular nozzles. Less than 3000 colony-forming units can be expected for direct deposition onto the surface of an eye.
Four-quadrant CMOS analog multiplier based on new current squarer circuit with high-speed

In this paper a new CMOS current-mode four-quadrant analog multiplier circuit based on squarer circuit is proposed. The dual translinear loop is the basic building block in realization scheme. Supply voltage is 3.3V. The major advantages of this multiplier are high speed, low power, high linearity and less dc offset error. The circuit is designed and simulated using HSPICE simulator by level 49 parameters (BSIM3v3) in 0. 35µm standard CMOS technology. The simulation results of analog multiplier demonstrate a linearity error of 1.15%, a THD of 0.76% in 1MHz, a −3dB bandwidth of 44.9MHz and a maximum power consumption of 0.24mW.
Multiple meningiomas: Investigating the molecular basis of sporadic and familial forms

Meningiomas are common tumors of the coverings of the central nervous system (CNS), comprising 20% of intracranial neoplasms. The only genes known to be associated with sporadic meningiomas are NF2 on chromosome 22 and the related cytoskeleton element DAL‐1 on chromosome 18. Between 1 and 8% of patients with meningiomas develop multiple meningiomas, a trait transmitted occasionally in an autosomal dominant fashion. We investigated the DAL‐1 and NF2 loci in 7 unrelated multiple meningioma patients without clinical evidence of NF2 by mutational and pathological analysis. Five novel intragenic microsatellite polymorphisms were developed for specific detection of loss of heterozygosity (LOH) at the DAL‐1 locus. Three of 7 patients had affected relatives and all affected individuals were female. No tumors from familial patients were of a fibroblastic subtype. Truncating NF2 mutations were detected in 3 tumor specimens, but were not present in the corresponding blood samples. Two tumors showed LOH at the NF2 locus. All tumors showing mutations at the NF2 locus originated from patients without affected relatives and were of the fibroblastic subtype. Five non‐truncating alterations in the DAL‐1 gene were found, however, LOH of chromosome 18 markers was not seen in any tumor. In contrast to the NF2 results, all DAL‐1 alterations were found in paired blood specimens. Our findings provide further evidence that the molecular basis of sporadic and familial multiple meningiomas is fundamentally different and extend this dichotomy to pathologic subtypes. DAL‐1 does not function as a true tumor suppressor in these patients. © 2002 Wiley‐Liss, Inc.
Transmembrane thioredoxin‐related protein TMX1 is reversibly oxidized in response to protein accumulation in the endoplasmic reticulum

Numerous secretory and membrane proteins undergo post‐translational modifications in the endoplasmic reticulum (ER), and the formation of disulfide bonds is a modification that is critical for proper protein folding. The mammalian ER contains a large family of oxidoreductases that are considered to catalyze thiol/disulfide exchange and ensure the maintenance of a redox environment within the ER. Disruption of ER homeostasis causes an accumulation of misfolded and unfolded proteins, a condition termed ER stress. Despite advances in our understanding of the ER stress response and its downstream signaling pathway, it remains unclear how ER redox balance is controlled and restored in the stressed ER. In this study, we determined that brefeldin A (BFA)‐induced protein accumulation in the ER triggers reversible oxidation of transmembrane thioredoxin‐related protein 1 (TMX1). Conversion of TMX1 to the oxidized state preceded the induction of immunoglobulin‐binding protein, a downstream marker of ER stress. Oxidized TMX1 reverted to the basal reduced state after BFA removal, and our results suggest that glutathione is involved in maintaining TMX1 in the reduced form. These findings provide evidence for a redox imbalance caused by protein overload, and demonstrate the existence of a pathway that helps restore ER homeostasis during poststress recovery.
Biodistillate Transportation Fuels 3 - Life Cycle Impacts

Life-cycle assessments (LCA) of biodistillate fuels are becoming increasingly important for policy decisions regarding alternative fuels. However, due to the dataintensive and assumptive nature of LCAs, rarely do two different studies produce comparable results. To add to the complexity, effects of indirect land use changes are now being incorporated into LCA models. This development is influencing policy decisions and generating much controversy. A literature survey of 55 different LCA studies of biodistillate fuels was conducted. The comparison of energy requirements and global warming potential (GWP) impacts of these studies help to illustrate which data inputs and assumptions most strongly affect the results, and wherein the major discrepancies lie. Life-cycle energy results are typically reported as energy return (ER), meaning the heating value of the biofuel divided by the total fossil energy inputs to produce the fuels. Most studies report significantly higher ER values for biodistillates (both biodiesel and renewable diesel) compared to conventional diesel fuel. Similarly, most LCA studies show significant GWP reductions for biodistillates compared to conventional diesel. However, due to lack of consistency in LCA approaches and assumptions, considerable uncertainty still exists regarding the accuracy of most LCA results.