Miracle-dz/UniFAR-FTUs huggingface dataset:
Automatic Segmentation of Myocardial Infarction in Rats Subjected to Regional Ischemia

The experimental and preclinical studies of ischemia and reperfusion on animal models usually evaluate the sizes of area at risk (AR) of infarction and infarct area (IA) as fundamental parameters. The authors usually don't provide any detailed information about the image processing of their data, though the IA or AR segmentation is often challenging and prone to be expert-depending. Here, we describe a new approach for automatic IA and AR segmentation based on combination of Random Forest classifier and two-step pixel-wise k-means classification of image pixels. The evaluation has been performed on the set of 16 images from 8 rat hearts. We compared sizes of normal perfused tissues, viable area and IA (normalized to percentage of total area) obtained by our method with manually segmentation by biologist. We achieved mean absolute error of 2.59% with mean standard deviation of 1.61%.
An Efficient Algorithm Based on Wavelet Transform to Reduce Powerline Noise From Electrocardiograms

Nowadays, the electrocardiogram (ECG) is still the most widely used signal for the diagnosis of cardiac pathologies. However, this recording is often disturbed by the powerline interference (PLI), its removal being mandatory to avoid misdiagnosis. Although a broad variety of methods have been proposed for that purpose, often they substantially alter the original signal morphology or are computationally expensive. Hence, the present work introduces a simple and efficient algorithm to suppress the PLI from the ECG. Briefly, the input signal is decomposed into four Wavelet levels and the resulting coefficients are thresholded to remove the PLI estimated from the TQ intervals. The denoised ECG signal is then reconstructed by computing the inverse Wavelet transform. The method has been validated making use of fifty 10-min length clean ECG segments obtained from the MIT-BIH Normal Sinus Rhythm database, which were contaminated with a sinusoidal signal of 50 Hz and variable harmonic content. Comparing the original and denoised ECG signals through a signed correlation index, improvements between 10-72% have been observed with respect to common adaptive notch filtering, implemented for comparison. These results suggest that the proposed method is featured by an enhanced trade-off between noise reduction and signal morphology preservation
Efficient Lidar Signal Denoising Algorithm Using Variational Mode Decomposition Combined with a Whale Optimization Algorithm

Although lidar is a powerful active remote sensing technology, lidar echo signals are easily contaminated by noise, particularly in strong background light, which severely affects the retrieval accuracy and the effective detection range of the lidar system. In this study, a coupled variational mode decomposition (VMD) and whale optimization algorithm (WOA) for noise reduction in lidar signals is proposed and demonstrated completely. The combination of optimal VMD parameters of decomposition mode number K and quadratic penalty α was obtained by using the WOA and was critical in acquiring satisfactory analysis results for VMD denoising technology. Then, the Bhattacharyya distance was applied to identify the relevant modes, which were reconstructed to achieve noise filtering. Simulation results show that the performance of the proposed VMD-WOA method is superior to that of wavelet transform, empirical mode decomposition, and its variations. Experimentally, this method was successfully used to filter a lidar echo signal. The signal-to-noise ratio of the denoised signal was increased to 23.92 dB, and the detection range was extended from 6 to 10 km.
Squint Mode GEO SAR Imaging Using Bulk Range Walk Correction on Received Signals

Geosynchronous synthetic aperture radar (GEO SAR) has the potential for conducting long-term observation of target zones, which is essential for remote sensing applications such as disaster monitoring and vegetation measurements. The squint imaging mode is crucial for long-term observation using GEO SAR. However, this type of SAR imaging is problematic because the squint mode introduces a nonzero range cell walk, which increases the prevalence of invalid data in echoes and intensifies the coupling between the azimuth and range. Therefore, this paper proposes a novel squint mode GEO SAR imaging method based on the correction of the bulk range walk of received signals. Adjusting the starting time of the receiving window significantly reduces the redundancy in echoes. Then, first-order filtering, range cell migration correction, range compression, partial dechirp, and azimuth compression are used to obtain the imaging result. Simulation results for the GEO SAR imaging of Wenchuan County in China demonstrate that the proposed algorithm can achieve a resolution of 5 m within a 30 × 30 km swath over 48% of the orbital period.
A New Framework for Modelling and Monitoring the Conversion of Cultivated Land to Built-up Land Based on a Hierarchical Hidden Semi-Markov Model Using Satellite Image Time Series

Large amounts of farmland loss caused by urban expansion has been a severe global environmental problem. Therefore, monitoring urban encroachment upon farmland is a global issue. In this study, we propose a novel framework for modelling and monitoring the conversion of cultivated land to built-up land using a satellite image time series (SITS). The land-cover change process is modelled by a two-level hierarchical hidden semi-Markov model, which is composed of two Markov chains with hierarchical relationships. The upper chain represents annual land-cover dynamics, and the lower chain encodes the vegetation phenological patterns of each land-cover type. This kind of architecture enables us to represent the multilevel semantic information of SITS at different time scales. Specifically, intra-annual series reflect phenological differences and inter-annual series reflect land-cover dynamics. In this way, we can take advantage of the temporal information contained in the entire time series as well as the prior knowledge of land cover conversion to identify where and when changes occur. As a case study, we applied the proposed method for mapping annual, long-term urban-induced farmland loss from Moderate Resolution Imaging Spectroradiometer (MODIS) Normalized Difference Vegetation Index (NDVI) time series in the Jing-Jin-Tang district, China from 2001 to 2010. The accuracy assessment showed that the proposed method was accurate for detecting conversions from cultivated land to built-up land, with the overall accuracy of 97.72% in the spatial domain and the temporal accuracy of 74.60%. The experimental results demonstrated the superiority of the proposed method in comparison with other state-of-the-art algorithms. In addition, the spatial-temporal patterns of urban expansion revealed in this study are consistent with the findings of previous studies, which also confirms the effectiveness of the proposed method.
Evaluation of Ground Surface Models Derived from Unmanned Aerial Systems with Digital Aerial Photogrammetry in a Disturbed Conifer Forest

Detailed vertical forest structure information can be remotely sensed by combining technologies of unmanned aerial systems (UAS) and digital aerial photogrammetry (DAP). A key limitation in the application of DAP methods, however, is the inability to produce accurate digital elevation models (DEM) in areas of dense vegetation. This study investigates the terrain modeling potential of UAS-DAP methods within a temperate conifer forest in British Columbia, Canada. UAS-acquired images were photogrammetrically processed to produce high-resolution DAP point clouds. To evaluate the terrain modeling ability of DAP, first, a sensitivity analysis was conducted to estimate optimal parameters of three ground-point classification algorithms designed for airborne laser scanning (ALS). Algorithms tested include progressive triangulated irregular network (TIN) densification (PTD), hierarchical robust interpolation (HRI) and simple progressive morphological filtering (SMRF). Points were classified as ground from the ALS and served as ground-truth data to which UAS-DAP derived DEMs were compared. The proportion of area with root mean square error (RMSE) <1.5 m were 56.5%, 51.6% and 52.3% for the PTD, HRI and SMRF methods respectively. To assess the influence of terrain slope and canopy cover, error values of DAP-DEMs produced using optimal parameters were compared to stratified classes of canopy cover and slope generated from ALS point clouds. Results indicate that canopy cover was approximately three times more influential on RMSE than terrain slope.
Operational Use of Surfcam Online Streaming Images for Coastal Morphodynamic Studies

Coastal video monitoring has been proven to be a valuable shore-based remote-sensing technique to study coastal processes, as it offers the possibility of high-frequency, continuous and autonomous observations of the coastal area. However, the installation of a video systems infrastructure requires economical and technical efforts, along with being often limited by logistical constraints. This study presents methodological approaches to exploit “surfcam” internet streamed images for quantitative scientific studies. Two different methodologies to collect the required ground control points (GCPs), both during fieldwork and using web tools freely available are presented, in order to establish a rigorous geometric connection between terrestrial and image spaces. The application of an image projector tool allowed the estimation of the unknown camera parameters necessary to georectify the online streamed images. Three photogrammetric procedures are shown, distinct both in the design of the computational steps and in number of GCPs available to solve the spatial resection system. Results showed the feasibility of the methodologies to generate accurate rectified planar images, with the best horizontal projection accuracy of 1.3 m compatible with that required for a quantitative analysis of coastal processes. The presented methodologies can turn “surfcam” infrastructures and any online streaming beach cam, into fully remote shore-based observational systems, fostering the use of these freely available images for the study of nearshore morphodynamics.
Parameterized Nonlinear Least Squares for Unsupervised Nonlinear Spectral Unmixing

This paper presents a new parameterized nonlinear least squares (PNLS) algorithm for unsupervised nonlinear spectral unmixing (UNSU). The PNLS-based algorithms transform the original optimization problem with respect to the endmembers, abundances, and nonlinearity coefficients estimation into separate alternate parameterized nonlinear least squares problems. Owing to the Sigmoid parameterization, the PNLS-based algorithms are able to thoroughly relax the additional nonnegative constraint and the nonnegative constraint in the original optimization problems, which facilitates finding a solution to the optimization problems . Subsequently, we propose to solve the PNLS problems based on the Gauss–Newton method. Compared to the existing nonnegative matrix factorization (NMF)-based algorithms for UNSU, the well-designed PNLS-based algorithms have faster convergence speed and better unmixing accuracy. To verify the performance of the proposed algorithms, the PNLS-based algorithms and other state-of-the-art algorithms are applied to synthetic data generated by the Fan model and the generalized bilinear model (GBM), as well as real hyperspectral data. The results demonstrate the superiority of the PNLS-based algorithms.
Soil Moisture Remote Sensing across Scales

Soil moisture plays an important role in the water, carbon, and energy cycles. We summarize the 13 articles collected in this Special Issue on soil moisture remote sensing across scales in terms of the spatial, temporal, and frequency scales studied. We also review these papers regarding the data, the methods, and the different applications discussed.
Urban Tomographic Imaging Using Polarimetric SAR Data

In this paper, we investigate the potential of polarimetric Synthetic Aperture Radar (SAR) tomography (Pol-TomoSAR) in urban applications. TomoSAR exploits the amplitude and phase of the received data and offers the possibility to resolve multiple scatters lying in the same range–azimuth resolution cell. In urban environments, this issue is very important since layover causes multiple coherent scatterers to be mapped in the same range–azimuth image pixel. To achieve reliable and accurate results, TomoSAR requires a large number of multi-baseline acquisitions which, for satellite-borne SAR systems, are collected with long time intervals. Then, accurate tomographic reconstructions would require multiple scatterers to remain stable between all the acquisitions. In this paper, an extension of a generalized likelihood ratio test (GLRT)-based tomographic approach, denoted as Fast-Sup-GLRT, to the polarimetric data case is introduced, with the purpose of investigating if, in urban applications, the use of polarimetric channels allows for reduction of the number of baselines required to achieve a given scatterer’s detection performance. The results presented show that the use of dual polarization data allows the proposed detector to work in an equivalent or better way than use of a double number of independent single polarization channels.
A Novel Approach for the Detection of Standing Tree Stems from Plot-Level Terrestrial Laser Scanning Data

Tree stem detection is a key step toward retrieving detailed stem attributes from terrestrial laser scanning (TLS) data. Various point-based methods have been proposed for the stem point extraction at both individual tree and plot levels. The main limitation of the point-based methods is their high computing demand when dealing with plot-level TLS data. Although segment-based methods can reduce the computational burden and uncertainties of point cloud classification, its application is largely limited to urban scenes due to the complexity of the algorithm, as well as the conditions of natural forests. Here we propose a novel and simple segment-based method for efficient stem detection at the plot level, which is based on the curvature feature of the points and connected component segmentation. We tested our method using a public TLS dataset with six forest plots that were collected for the international TLS benchmarking project in Evo, Finland. Results showed that the mean accuracies of the stem point extraction were comparable to the state-of-art methods (>95%). The accuracies of the stem mappings were also comparable to the methods tested in the international TLS benchmarking project. Additionally, our method was applicable to a wide range of stem forms. In short, the proposed method is accurate and simple; it is a sensible solution for the stem detection of standing trees using TLS data.
Dense Semantic Labeling with Atrous Spatial Pyramid Pooling and Decoder for High-Resolution Remote Sensing Imagery

Dense semantic labeling is significant in high-resolution remote sensing imagery research and it has been widely used in land-use analysis and environment protection. With the recent success of fully convolutional networks (FCN), various types of network architectures have largely improved performance. Among them, atrous spatial pyramid pooling (ASPP) and encoder-decoder are two successful ones. The former structure is able to extract multi-scale contextual information and multiple effective field-of-view, while the latter structure can recover the spatial information to obtain sharper object boundaries. In this study, we propose a more efficient fully convolutional network by combining the advantages from both structures. Our model utilizes the deep residual network (ResNet) followed by ASPP as the encoder and combines two scales of high-level features with corresponding low-level features as the decoder at the upsampling stage. We further develop a multi-scale loss function to enhance the learning procedure. In the postprocessing, a novel superpixel-based dense conditional random field is employed to refine the predictions. We evaluate the proposed method on the Potsdam and Vaihingen datasets and the experimental results demonstrate that our method performs better than other machine learning or deep learning methods. Compared with the state-of-the-art DeepLab_v3+ our model gains 0.4% and 0.6% improvements in overall accuracy on these two datasets respectively.
Low-Cost and Efficient Indoor 3D Reconstruction through Annotated Hierarchical Structure-from-Motion

With the widespread application of location-based services, the appropriate representation of indoor spaces and efficient indoor 3D reconstruction have become essential tasks. Due to the complexity and closeness of indoor spaces, it is difficult to develop a versatile solution for large-scale indoor 3D scene reconstruction. In this paper, an annotated hierarchical Structure-from-Motion (SfM) method is proposed for low-cost and efficient indoor 3D reconstruction using unordered images collected with widely available smartphone or consumer-level cameras. Although the reconstruction of indoor models is often compromised by the indoor complexity, we make use of the availability of complex semantic objects to classify the scenes and construct a hierarchical scene tree to recover the indoor space. Starting with the semantic annotation of the images, images that share the same object were detected and classified utilizing visual words and the support vector machine (SVM) algorithm. The SfM method was then applied to hierarchically recover the atomic 3D point cloud model of each object, with the semantic information from the images attached. Finally, an improved random sample consensus (RANSAC) generalized Procrustes analysis (RGPA) method was employed to register and optimize the partial models into a complete indoor scene. The proposed approach incorporates image classification in the hierarchical SfM based indoor reconstruction task, which explores the semantic propagation from images to points. It also reduces the computational complexity of the traditional SfM by avoiding exhausting pair-wise image matching. The applicability and accuracy of the proposed method was verified on two different image datasets collected with smartphone and consumer cameras. The results demonstrate that the proposed method is able to efficiently and robustly produce semantically and geometrically correct indoor 3D point models.
Smart System for Prediction of Accurate Surface Electromyography Signals Using an Artificial Neural Network

Bioelectric signals are used to measure electrical potential, but there are different types of signals. The electromyography (EMG) is a type of bioelectric signal used to monitor and recode the electrical activity of the muscles. The current work aims to model and reproduce surface EMG (SEMG) signals using an artificial neural network. Such research can aid studies into life enhancement for those suffering from damage or disease affecting their nervous system. The SEMG signal is collected from the surface above the bicep muscle through dynamic (concentric and eccentric) contraction with various loads. In this paper, we use time domain features to analyze the relationship between the amplitude of SEMG signals and the load. We extract some features (e.g., mean absolute value, root mean square, variance and standard deviation) from the collected SEMG signals to estimate the bicep’ muscle force for the various loads. Further, we use the R-squared value to depict the correlation between the SEMG amplitude and the muscle loads by linear fitting. The best performance the ANN model with 60 hidden neurons for three loads used (3 kg, 5 kg and 7 kg) has given a mean square error of 1.145, 1.3659 and 1.4238, respectively. The R-squared observed are 0.9993, 0.99999 and 0.99999 for predicting (reproduction step) of smooth SEMG signals.
Using TSX/TDX Pursuit Monostatic SAR Stacks for PS-InSAR Analysis in Urban Areas

Persistent Scatterer Interferometry (PS-InSAR) has become an indispensable tool for monitoring surface motion in urban environments. The interferometric configuration of PS-InSAR tends to mix topographic and deformation components in differential interferometric observations. When the upcoming constellation missions such as, e.g., TanDEM-L or TWIN-L provide new standard operating modes, bi-static stacks for deformation monitoring will be more commonly available in the near future. In this paper, we present an analysis of the applicability of such data sets for urban monitoring, using a stack of pursuit monostatic data obtained during the scientific testing phase of the TanDEM-X (TDX) mission. These stacks are characterized by extremely short temporal baselines between the TerraSAR-X (TSX) and TanDEM-X acquisitions at the same interval. We evaluate the advantages of this acquisition mode for urban deformation monitoring with several of the available acquisition pairs. Our proposed method exploits the special properties of this data using a modified processing chain based on the standard PS-InSAR deformation monitoring procedure. We test our approach with a TSX/TDX mono-static pursuit stack over Guangzhou, using both the proposed method and the standard deformation monitoring procedure, and compare the two results. The performance of topographic and deformation estimation is improved by using the proposed processing method, especially regarding high-rise buildings, given the quantitative statistic on temporal coherence, detectable numbers, as well as the PS point density of persistent scatters points, among which the persistent scatter numbers increased by 107.2% and the detectable height span increased by 78% over the standard processing results.
Sonic: Zero-Knowledge SNARKs from Linear-Size Universal and Updatable Structured Reference Strings

Ever since their introduction, zero-knowledge proofs have become an important tool for addressing privacy and scalability concerns in a variety of applications. In many systems each client downloads and verifies every new proof, and so proofs must be small and cheap to verify. The most practical schemes require either a trusted setup, as in (pre-processing) zk-SNARKs, or verification complexity that scales linearly with the complexity of the relation, as in Bulletproofs. The structured reference strings required by most zk-SNARK schemes can be constructed with multi-party computation protocols, but the resulting parameters are specific to an individual relation. Groth et al. discovered a zk-SNARK protocol with a universal structured reference string that is also updatable, but the string scales quadratically in the size of the supported relations. Here we describe a zero-knowledge SNARK, Sonic, which supports a universal and continually updatable structured reference string that scales linearly in size. We also describe a generally useful technique in which untrusted "helpers" can compute advice that allows batches of proofs to be verified more efficiently. Sonic proofs are constant size, and in the "helped" batch verification context the marginal cost of verification is comparable with the most efficient SNARKs in the literature.