Miracle-dz/UniFAR-FTUs huggingface dataset:
West African monsoon dynamics inferred from abrupt fluctuations of Lake Mega-Chad

Significance North Africa was wetter 15,000–5,000 years ago than today, with wetlands and lakes formed in the Sahara due to an enhanced monsoon. We reconstruct the lake-level history of Lake Mega-Chad, when it was the largest African lake, and demonstrate that this humid period ended abruptly 5,000 years ago, indicating that the African monsoon exhibits a nonlinear response to insolation forcing. The northern basin of Lake Mega-Chad, currently the world’s greatest dust source, became dry around 1,000 years ago. Prior to that time dust output from the northern basin would have been limited, and suggestions that this dust plays an important role in fertilizing Atlantic and Amazonian ecosystems are either overstated or only true for the last thousand years. From the deglacial period to the mid-Holocene, North Africa was characterized by much wetter conditions than today. The broad timing of this period, termed the African Humid Period, is well known. However, the rapidity of the onset and termination of the African Humid Period are contested, with strong evidence for both abrupt and gradual change. We use optically stimulated luminescence dating of dunes, shorelines, and fluviolacustrine deposits to reconstruct the fluctuations of Lake Mega-Chad, which was the largest pluvial lake in Africa. Humid conditions first occur at ∼15 ka, and by 11.5 ka, Lake Mega-Chad had reached a highstand, which persisted until 5.0 ka. Lake levels fell rapidly at ∼5 ka, indicating abrupt aridification across the entire Lake Mega-Chad Basin. This record provides strong terrestrial evidence that the African Humid Period ended abruptly, supporting the hypothesis that the African monsoon responds to insolation forcing in a markedly nonlinear manner. In addition, Lake Mega-Chad exerts strong control on global biogeochemical cycles because the northern (Bodélé) basin is currently the world’s greatest single dust source and possibly an important source of limiting nutrients for both the Amazon Basin and equatorial Atlantic. However, we demonstrate that the final desiccation of the Bodélé Basin occurred around 1 ka. Consequently, the present-day mode and scale of dust production from the Bodélé Basin cannot have occurred before 1 ka, suggesting that its role in fertilizing marine and terrestrial ecosystems is either overstated or geologically recent.
Confident Assignment of Site-Specific Glycosylation in Complex Glycoproteins in a Single Step

A glycoprotein may contain several sites of glycosylation, each of which is heterogeneous. As a consequence of glycoform diversity and signal suppression from nonglycosylated peptides that ionize more efficiently, typical reversed-phase LC–MS and bottom–up proteomics database searching workflows do not perform well for identification of site-specific glycosylation for complex glycoproteins. We present an LC–MS system for enrichment, separation, and analysis of glycopeptides from complex glycoproteins (>4 N-glycosylation sequons) in a single step. This system uses an online HILIC enrichment trap prior to reversed-phase C18-MS analysis. We demonstrated the effectiveness of the system using a set of glycoproteins including human transferrin (2 sequons), human alpha-1-acid glycoprotein (5 sequons), and influenza A virus hemagglutinin (9 sequons). The online enrichment renders glycopeptides the most abundant ions detected, thereby facilitating the generation of high-quality data-dependent tandem mass spectra. The tandem mass spectra exhibited product ions from both glycan and peptide backbone dissociation for a majority of the glycopeptides tested using collisionally activated dissociation that served to confidently assign site-specific glycosylation. We demonstrated the value of our system to define site-specific glycosylation using a hemagglutinin containing 9 N-glycosylation sequons from a single HILIC-C18-MS acquisition.
Modifications of andrographolide to increase some biological activities: a patent review (2006 – 2011)

Introduction: Andrographis paniculata Nees, Acanthaceae, is a well-recognised medicinal plant in Asia. It has been reported to possess a variety of biological activities. The main constituent of A. paniculata is andrographolide (Androg). Since the plant is known to treat many diseases, Androg was modified for many biological activities to treat and prevent a variety of diseases. Area covered: This review surveys the patents from 2006 to 15 November 2011 for antibacterials, antivirals, antidiabetic, anticancer, analgesic, antipyretic and anti-inflammatory analogues. SciFinder database was used to search for the patent work using the keywords ‘andrographolide’, ‘andrographolide derivatives’, ‘andrographolide analogues’ and later additional limits, that is, ‘patent’ and ‘years’, ‘Clinical trial’ and ‘years’ were searched. Espacenet was also searched for ‘andrographolide’, ‘andrographolide derivatives’ and ‘andrographolide analogues’. Expert opinion: Androg is a good pharmacophore for many pharmacological activities. Esterification at either one or more of the three hydroxyls with short/long chains, heterocyclic, aromatic fatty acids was attempted and tested for a variety of activities. Most of the responses were positive. Other modifications were epoxidation at Δ7(18) along with esterifications with various carboxylic acids for anticancer activity. 15-Alkylidene analogues were investigated for α-glucosidase inhibition. The improvement of activities have not yet been proven to be due to the increase in the ability of analogues to reach the targets as prodrugs or the new feature structures fitted to the receptors. It seems that substitution with active compounds, such as lipoic acid, is a new trend for modification.
Believable cyberpeople: a true challenge for the decade

We define cyberpeople as people represented on thenet using embodiment. These people can be either Avatarsthat are a representation of a real human or completelysynthesized virtual humans or Autonomous VirtualAgents (AVAs). In this paper, we discuss the two kinds ofcyberpeople and show how it will become difficult in thenear future to distinguish Avatars from AVAs. We willdemonstrate with examples how embodied agents becomemore and more intelligent and autonomous.
One-Point Concentration of the Clique and Chromatic Numbers of the Random Cayley Graph on 픽2

Green [B. Green, Combinatorica, 25 (2005), pp. 307--326] showed that there exist constants $C_1,C_2>0$ such that the clique number $\omega_n$ of the Cayley graph on $\mathbb{F}_2^n$ generated by a random subset satisfies $\lim_{n\to\infty}\mathbb{P}(C_1n\log n < \omega_n < C_2n\log n)=1$. In this paper we find the best possible $C_1$ and $C_2$. Moreover, we prove that for $n$ in a set of density 1, the clique number is actually concentrated on a single value. As a simple consequence of these results, we also prove a one-point concentration result for the chromatic number, thus proving an $\mathbb{F}_2^n$ analogue of the famous conjecture by Bollobas [B. Bollobas, Combin. Probab. Comput. , 13 (2004), pp. 115--117] and giving almost the complete answer to the question by Green [B. Green, On the Chromatic Number of Random Cayley Graphs, preprint, 2013].
Chondrocyte apoptosis: a cause or consequence of osteoarthritis?

Osteoarthritis (OA) is a degenerative joint disease characterized by articular cartilage degradation and changes in the subchondral bone. Over the last two decades, there has been increasing evidence showing association between cartilage degradation and chondrocyte death, and different types of cell death in cartilage have been reported, including apoptosis and chondroptosis as well as necrosis, but which of these types of cell death predominate in OA is debatable. There are also some methodological difficulties in detecting the specific form of cell death in articular cartilage. Current ‘gold standard’ for detecting chondrocyte death is electron microscopy which suggests that the morphological changes of chondrocytes in OA cartilage are attributed to apoptosis and/or chondroptosis. However, the current literature appears to suggest that classic apoptosis plays an important role in OA; but whether chondrocyte apoptosis is a cause or a result of cartilage degeneration in OA is hotly contested. Studies of suitable animal models, especially longitudinal studies, are needed to address the cause‐and‐effect relationship.
Modular manufacturing experience in the South African clothing industry: Lessons learned

The global economy which is enhanced through changing technologies is pressurizing organisations to improve productivity of their business processes. Competition is forcing organisations to focus their energy on core competencies. Like many industries, the clothing industry is witnessing changes in technology, diversification of labour, managerial implications while competing on the global market. The South African clothing and textile industry has the potential to create jobs, but this potential has been steadily diminishing. The performance of the clothing industry, whether in terms of efficiency, working conditions or degree of social protection, is unstable. The industry's ability to generate sustainable and productive employment varies according to geographical locations. The process improvement methodology that could improve the status quo in the clothing industry is modular manufacturing, which is the focus of this paper. Qualitative results of the implementation of modular manufacturing and its relative experiences at a South African clothing manufacturer are presented through a case history.
Coping with nonstationary environments: a genetic algorithm using neutral variation

In nonstationary environments, it is difficult to apply traditional genetic algorithms (GAs) because they use strong selection pressure and lose the diversity of individuals rapidly. We propose a GA with neutral variation that can track environmental changes. The idea of this GA is inspired by Kimura's neutral theory (1983). The scheme of this GA allows neutral characters, which do not directly affect the fitness with respect to environments, thus increasing the diversity of individuals. In order to demonstrate the properties of this GA, we apply it to a permutation problem called the ladder-network, of which the imposed alignment on the output changes regularly. We show that the GA with neutral variation can adapt better to environmental changes than a traditional GA.
Renal replacement therapy in patients with acute renal failure: a systematic review.

CONTEXT Acute renal failure requiring dialytic support is associated with a high risk of mortality and substantial morbidity. OBJECTIVES To summarize current evidence guiding provision of dialysis for patients with acute renal failure, to make recommendations for management, and to identify areas in which additional research is needed. DATA SOURCES Systematic searches of peer-reviewed publications in MEDLINE, EMBASE, and All EBM Reviews through October 2007. STUDY SELECTION Randomized controlled trials (RCTs) and prospective cohort studies studying dialytic support in adults with acute renal failure that reported the incidence of clinical outcomes such as mortality, length of stay, need for chronic dialysis, or development of hypotension. DATA EXTRACTION Quality was independently assessed by 2 reviewers using the Jadad score (RCTs) and the Downs and Black checklist (cohort studies). A single reviewer extracted data, which were independently verified by a second reviewer. Results of RCTs were pooled using a random-effects model. DATA SYNTHESIS From 173 retrieved articles, 30 RCTs and 8 prospective cohort studies were eligible. No conclusions could be drawn about optimal indications for or timing of renal replacement. Available data comparing continuous renal replacement therapy (CRRT) with intermittent hemodialysis demonstrated no clinically relevant difference between modalities, including for all-cause mortality (relative risk [RR], 1.10; 95% confidence interval [CI], 0.99-1.23; I2 = 0%) or for the requirement for chronic dialysis treatment in survivors (RR, 0.91; 95% CI, 0.56-1.49; I2 = 0%). For patients treated with CRRT, limited data suggest that bicarbonate may be preferable to other forms of dialysate alkali and that citrate infusion may be an alternative to systemic anticoagulation in patients at high risk of bleeding. Among patients treated with continuous venovenous hemofiltration (CVVHF), the risk of death was lower at doses of 35 mL/kg per hour (RR of death compared with doses of 20 mL/kg per hour, 0.74; 95% CI, 0.63-0.88). The use of unsubstituted cellulosic membranes should be avoided in intermittent hemodialysis (RR of death compared with biocompatible membranes, 1.23; 95% CI, 1.01-1.50). CONCLUSIONS Based on current data, intermittent hemodialysis and CRRT appear to lead to similar clinical outcomes for patients with ARF. If CVVHF is used, a dose of 35 mL/kg per hour should be provided. Given the paucity of good-quality evidence in this important area, additional large randomized trials are needed to evaluate clinically important outcomes.
Acute response and subcellular movement of HSP27, αB‐crystallin and HSP70 in human skeletal muscle after blood‐flow‐restricted low‐load resistance exercise

Heat‐shock proteins (HSP) are important chaperones for stressed and damaged proteins. Low‐load blood‐flow‐restricted resistance exercise (BFRE) is generally believed not to induce significant muscle damage, but is hitherto unverified with intracellular markers. Consequently, the aim of this study was to investigate the HSP response after BFRE in human skeletal muscle.
Serological examination for evidence of infection with Hendra and Nipah viruses in Queensland piggeries.

OBJECTIVE To examine piggeries in Queensland for evidence of infection with Hendra virus and Nipah virus. DESIGN A serological survey was designed to provide 99% confidence of detecting at least one infected pig herd in Queensland, assuming that for each virus, at least 5% of herds would have been exposed to virus and that at least 40% of the finisher pigs in these herds would have detectable antibodies to virus. PROCEDURE A two stage sampling regimen was used. All samples were tested with serum neutralisation tests developed and performed at the Australian Animal Health Laboratory. RESULTS There was no evidence of antibody to either virus in the 500 samples collected from 100 herds. CONCLUSION The results of the survey support a case that commercial pigs in Queensland are free of both Hendra virus and Nipah virus infections.
Pigmentations of the Nails

Nail pigmentations can exhibit many different colors and shades. Most of them are harmless but cosmetically embarrassing, others are potentially serious and may lead to death if not adequately diagnosed and treated. This short review gives an explanation for a number of nail dyschromias and their etiologies as well as some hints as to their treatment.
The effects of flavanone-rich citrus juice on cognitive function and cerebral blood flow: an acute, randomised, placebo-controlled cross-over trial in healthy, young adults

Abstract A plausible mechanism underlying flavonoid-associated cognitive effects is increased cerebral blood flow (CBF). However, behavioural and CBF effects following flavanone-rich juice consumption have not been explored. The aim of this study was to investigate whether consumption of flavanone-rich juice is associated with acute cognitive benefits and increased regional CBF in healthy, young adults. An acute, single-blind, randomised, cross-over design was applied with two 500-ml drink conditions – high-flavanone (HF; 70·5 mg) drink and an energy-, and vitamin C- matched, zero-flavanone control. A total of twenty-four healthy young adults aged 18–30 years underwent cognitive testing at baseline and 2-h after drink consumption. A further sixteen, healthy, young adults were recruited for functional MRI assessment, whereby CBF was measured with arterial spin labelling during conscious resting state at baseline as well as 2 and 5 h after drink consumption. The HF drink was associated with significantly increased regional perfusion in the inferior and middle right frontal gyrus at 2 h relative to baseline and the control drink. In addition, the HF drink was associated with significantly improved performance on the Digit Symbol Substitution Test at 2 h relative to baseline and the control drink, but no effects were observed on any other behavioural cognitive tests. These results demonstrate that consumption of flavanone-rich citrus juice in quantities commonly consumed can acutely enhance blood flow to the brain in healthy, young adults. However, further studies are required to establish a direct causal link between increased CBF and enhanced behavioural outcomes following citrus juice ingestion.
Intelligent system of coordination and control for manufacturing

This paper wants shaping an intelligent system monitoring and control, which leads to optimizing material and information flows of the company. The paper presents a model for tracking and control system using intelligent real. Production system proposed for simulation analysis provides the ability to track and control the process in real time. Using simulation models be understood: the influence of changes in system structure, commands influence on the general condition of the manufacturing process conditions influence the behavior of some system parameters. Practical character consists of tracking and real-time control of the technological process. It is based on modular systems analyzed using mathematical models, graphic-analytical sizing, configuration, optimization and simulation.
High speed Flash Memory and 1T-DRAM on dopant segregated Schottky barrier (DSSB) FinFET SONOS device for multi-functional SoC applications

A novel dopant segregated Schottky barrier (DSSB) FinFET SONOS device is demonstrated in terms of multi functioning in a high speed NAND-type flash memory and capacitorless 1T-DRAM. In addition, a novel program mechanism that uses energy band engineered hot electrons (EBEHE) energized by sharp energy band bending at the edge of source/drain (S/D) is proposed for a high speed flash memory programming operation. A short program time of 100 ns and a low program voltage of 12 V yield a Vth shift of 3.5 V and a retention time exceeding 10 years. For multi functioning, the operation of a capacitorless 1T-DRAM is also demonstrated with a partially silicided DSSB in the same device.
Modulators of Na/K-ATPase: a patent review

Introduction: Na/K-ATPase is a heterodimeric transmembrane protein that regulates neuronal signaling, ion homeostasis, muscle contraction and substrate transportation. Modulators of Na/K-ATPase inhibit Na+/K+ exchange and increase cytosolic Ca2+ to induce inotropic activity in heart failure patients. Besides producing inotropic effects, the Na/K-ATPase acts as a signal transducer for the regulation of many cellular events, including those associated with tumor cell growth. This has aroused new interest for development of Na/K-ATPase inhibitors as anticancer agents. Areas covered: This article summarizes the various Na/K-ATPase inhibitors that have shown biological importance in clinical study and drug development for inotropic and anticancer agents. Expert opinion: The field of Na/K-ATPase modulators has attracted much interest in the past because of their clinical implication in heart failure treatments. Recent studies have shown that Na/K-ATPase modulators are capable of producing profound anticancer effects upon binding to the Na/K-ATPase. Interestingly, certain Na/K-ATPase isoforms are highly expressed in particular cancer cells, providing the opportunity for a Na/K-ATPase modulator to selectively target these cellular abnormalities. Indeed the most well-known Na/K-ATPase modulators, cardiac glycosides, have shown both strong binding affinity and moderate selectivity for isoforms. It is anticipated, in the future, that the further development of more selective and potent Na/K-ATPase modulators will take place, which in turn could lead to a more effective treatment for either heart failure or cancer.
Efficacy of water-dispersible formulations of biological control strains of Aspergillus flavus for aflatoxin management in corn

ABSTRACT Field experiments were conducted in 2011 and 2012 to evaluate the efficacy of water-dispersible granule (WDG) formulations of biocontrol strains of Aspergillus flavus in controlling aflatoxin contamination of corn. In 2011, when aflatoxin was present at very high levels, there was no WDG treatment that could provide significant protection against aflatoxin contamination. The following year a new WDG formulation was tested that resulted in 100% reduction in aflatoxin in one field experiment and ≥ 49% reduction in all five WDG treatments with biocontrol strain 21882. Large sampling error, however, limited the resolution of various treatment effects. Corn samples were also subjected to microbial analysis to understand better the mechanisms of successful biocontrol. In the samples examined here, the size of the A. flavus population on the grain was associated with the amount of aflatoxin, but the toxigenic status of that population was a poor predictor of aflatoxin concentration.
Volume regulation and shape bifurcation in the cell nucleus

Alterations in nuclear morphology are closely associated with essential cell functions, such as cell motility and polarization, and correlate with a wide range of human diseases, including cancer, muscular dystrophy, dilated cardiomyopathy and progeria. However, the mechanics and forces that shape the nucleus are not well understood. Here, we demonstrate that when an adherent cell is detached from its substratum, the nucleus undergoes a large volumetric reduction accompanied by a morphological transition from an almost smooth to a heavily folded surface. We develop a mathematical model that systematically analyzes the evolution of nuclear shape and volume. The analysis suggests that the pressure difference across the nuclear envelope, which is influenced by changes in cell volume and regulated by microtubules and actin filaments, is a major factor determining nuclear morphology. Our results show that physical and chemical properties of the extracellular microenvironment directly influence nuclear morphology and suggest that there is a direct link between theenvironment andgene regulation.
CMOS Magnetic Particle Flow Cytometer

Neutrophils, a class of white blood cells, are our body’s first line of defense against invading pathogens. When the number of neutrophils in blood drops to 200cells/$\mu$L, it leads to a critical clinical condition called neutropenia. Currently, optical flow cytometry is the most common and powerful technique used to diagnose neutropenia, but the centralized nature of the test, time-consuming sample preparation and high cost prevent real-time modification of treatment regimens. In this thesis, we propose an approach of using magnetic labels to tag and detect cells that allows us to design a low cost point-of-care flow cytometer to diagnose neutropenia. The cytometer cartridge integrates a gravity driven microfluidic channel with a CMOS sensor chip that detects magnetically labeled cells as they flow over it. The sensor combines an on-chip excitation coil that magnetizes the labels and a pick-up coil that detects them. The high frequency RF signal from the sensor is down-converted and amplified by on-chip receiver circuitry, which has been optimized to maximize the signal to noise ratio. The functionality of the cytometer is demonstrated with SKBR3 cancer cells labeled with 1$\mu$m magnetic labels using streptavidin-biotin chemistry. The SKBR3 cells are used in lieu of neutrophils as they can be cultured in a laboratory setting and pose minimal bio-hazard. Furthermore, the high frequency operation of the sensor enables classification of two types of magnetic labels, which is necessary to obtain absolute cell-counts.