Miracle-dz/UniFAR-FTUs huggingface dataset:
Effects of crop type on Bacillus thuringiensis toxicity and residual activity against Trichoplusia ni in greenhouses

We assessed the efficacy and persistence of a Bacillus thuringiensiskurstaki (Btk) formulation (Dipel) against Trichoplusia ni (Hubner) (Lep., Noctuidae), the cabbage looper, on three greenhouse vegetable crops (tomato, bell pepper and cucumber). First, T. ni larvae were fed leaf discs treated with Btk to assess how Btk toxicity varies with host plant. Secondly, T. ni larvae were fed leaf discs harvested from plants that had been sprayed with Btk 1, 5 and 9 days previously to assess the residual activity of Btk toxicity in greenhouse environments. Mortality of T. ni larvae fed tomato leaf discs was significantly higher than T. ni fed cucumber or pepper leaf discs. The toxicity of Btk had declined by less than 50% after 9 days, which suggests that Btk persistence is lengthy in greenhouse environments. No crop effects on the residual activity of Btk were found. These results demonstrate that the greenhouse environment and the crop should be considered when using Btk for insect management on greenhouse crops.
Ecophysiological Traits of Invasive C3 Species Calotropis procera to Maintain High Photosynthetic Performance Under High VPD and Low Soil Water Balance in Semi-Arid and Seacoast Zones

The evergreen C3 plant Calotropis procera is native to arid environments. Thus, it grows under high vapor pressure deficit (VPD), intense light, and severe drought conditions. We measured several ecophysiological traits in C. procera plants growing in semi-arid and seacoast environments to assess the attributes that support its photosynthetic performance under these contrasting conditions. Gas exchange analysis, primary metabolism content, nutrients, the antioxidant system, and leaf anatomy traits were measured under field conditions. In the semi-arid environment, C. procera was exposed to a prolonged drought season with a negative soil water balance during the 2 years of the study. Calotropis procera plants were exposed to a positive soil water balance only in the rainy season in the seacoast environment. The leaves of C. procera showed the same photosynthetic rate under high or low VPD, even in dry seasons with a negative soil water balance. Photosynthetic pigments, leaf sugar content, and the activity of antioxidant enzymes were increased in both places in the dry season. However, the anatomical adjustments were contrasting: while, in the semi-arid environment, mesophyll thickness increased in the driest year, in the seacoast environment, the cuticle thickness and trichome density were increased. The ability to maintain photosynthetic performance through the seasons would be supported by new leaves with different morpho-anatomical traits, with contrasting changes between semi-arid and seacoast environments. Furthermore, our results suggest that an efficient antioxidative system and leaf sugar dynamics can contribute to protecting the photosynthetic machinery even under severe drought.
Mathematical Model Of Tuberculosis Transmission With Reccurent Infection And Vaccination

This paper presents a model of tuberculosis transmission with vaccination by explicitely considering the total number of recovered individuals, either from natural recovery or due to vaccination. In this paper the endemic and nonendemic fixed points, basic reproduction number, and vaccination reproduction number are given. Some results regarding the stability of the fixed points and the relation to the basic reproduction numbers are analysed. At the end of this study, the numerical computation presented and it shows that vaccination is capable to reduce the number of laten and infectious populations.
A Thermodynamic Model of Mesoscale Neural Field Dynamics: Derivation and Linear Analysis

Motivated by previous research suggesting that mesoscopic collective activity has the defining characteristics of a turbulent system, we postulate a thermodynamic model based on the fundamental assumption that the activity of a neuron is characterized by two distinct stages: a sub-threshold stage, described by the value of mean membrane potential, and a transitional stage, corresponding to the firing event. We therefore distinguish between two types of energy: the potential energy released during a spike, and the internal kinetic energy that triggers a spike. Formalizing these assumptions produces a system of integro-differential equations that generalizes existing models [Wilson and Cowan, 1973, Amari, 1977], with the advantage of providing explicit equations for the evolution of state variables. The linear analysis of the system shows that it supports single- or triple-point equilibria, with the refractoriness property playing a crucial role in the generation of oscillatory behavior. In single-type (excitatory) systems this derives from the natural refractory state of a neuron, producing “refractory oscillations” with periods on the order of the neuron refractory period. In dual-type systems, the inhibitory component can provide this functionality even if neuron refractory period is ignored, supporting mesoscopic-scale oscillations at much lower activity levels. Assuming that the model has any relevance for the interpretation of LFP measurements, it provides insight into mesocale dynamics. As an external forcing, theta may play a major role in modulating key parameters of the system: internal energy and excitability (refractoriness) levels, and thus in maintaining equilibrium states, and providing the increased activity necessary to sustain mesoscopic collective action. Linear analysis suggest that gamma oscillations are associated with the theta trough because it corresponds to higher levels of forced activity that decreases the stability of the equilibrium state, facilitating mesoscopic oscillations.
Vinculin mediated axon growth requires interaction with actin but not talin

Axon growth requires coordination of the actin cytoskeleton by actin-binding proteins in the extending neurites. Vinculin is a major constituent of focal adhesion but its role in neuronal migration and axon growth is poorly understood. We found that vinculin deletion in mouse neocortical neurons attenuated axon growth both in vitro and in vivo. Using different functional mutants of vinculin, we found that expression of a constitutively active vinculin significantly enhanced axon growth while the head-neck domain had a moderate inhibitory effect. Interesting, we found that vinculin-talin interaction was dispensable for axon growth and neuronal migration. Strikingly, expression of the tail domain delayed migration, increased branching and stunted axon. Inhibition of the Arp2/3 complex or abolishing the tail domain interaction with actin completely reversed the branching phenotype caused by tail domain expression without affecting axon length. Super-resolution microscopy showed increased mobile fraction of actin in tail domain expressing neurons. Our results provide novel insights into the role of vinculin and its functional domains in regulating neuronal migration and axon growth.
Serial Mediation of Environmental Preference and Place Attachment in the Relationship between Perceived Street Walkability and Mood of the Elderly

Urban streets are important public spaces for daily activities that play a crucial role in promoting health in the elderly. The purpose of this study was to investigate the association between perceived street walkability and mood in the elderly, and specifically, the mediating effect of environmental preference and place attachment. We surveyed a total of 269 elderly residents from six streets in Guangzhou, China. We collected assessments of the street environments, environmental preferences, place attachment, and mood status from the elderly. A serial multiple mediator model was constructed using the structural equation modeling method. The results showed that the perceived street walkability was sequentially associated first with an increased level of place attachment (β = 0.798, SE = 0.358, p < 0.000) and then environmental preference (β = 0.191, SE = 0.033, p = 0.038), which was in turn related to improvement of positive mood in the elderly (β = 0.595 SE = 0.341, p < 0.000). Environmental preference alone was found to be significantly associated with positive mood (β = 0.595, SE = 0.341, p < 0.000), while no significant effect of place attachment was found when considered individually (β = −0.075, SE = 0.089, p = 0.395). These findings provide a greater understanding of the possible mechanism through which street environment impacts mood in the elderly. Therefore, when promoting the emotional experience of the elderly, we might consider not only physical environment factors but also psychological conditions in street environments.
New Extinct Mekosuchine Crocodile from Vanuatu, South Pacific

Abstract We describe a new species of crocodile (Reptilia: Crocodyloidea: Mekosuchinae) from a maxilla recovered at the Arapus archaeological site, on the island of Efate, Vanuatu, South Pacific. As with mekosuchine species in New Caledonia and Fiji, Mekosuchus kalpokasi sp. nov. was a small, possibly terrestrial carnivore that is now extinct. The differences between the Efate specimen and previously described species of Mekosuchus warrant recognition of a new species. Based on its association with Efate's earliest known human inhabitants, dating approximately 3000 cal yr B.P., the extinction of M. kalpokasi and other insular mekosuchines may have been anthropogenic. The lack of adequately dated pre-Quaternary and Quaternary vertebrate fossil records from Vanuatu, New Caledonia, and Fiji (as well as other smaller islands) precludes determining the timing and route of dispersal of mekosuchine crocodyloids.
A preliminary revision of the genus Plecotus (Chiroptera, Vespertilionidae) based on genetic and morphological results

The phylogenetic relationships within the genus Plecotus were assessed using molecular as well as morphological methods. With only three species missing, our study is based on an almost comprehensive taxonomic sampling. The genetic analysis comprised 151 individuals from throughout the range. Sequences of two mitochondrial sections, parts of the 16S rRNA gene (16S) and of the control region (CR) were analysed. The morphological analysis of cranial and external characters comprised 697 individuals, including 10 holotypes and one lectotype. Data from 15 craniometric characters of 442 specimens were used in the multivariate analyses. The molecular data identified nine primary clades representing 11 species, 10 of which could be assigned to described taxa, whereas one was described as a new species, Plecotus strelkovi Spitzenberger sp. nov. The tree based on 16S revealed two major lineages, one consisting of only one primary clade restricted to the Mediterranean, the other consisting of eight primary clades representing Eurasian taxa. The morphological analysis revealed five additional species, two of them not described. Together with the recently described P. taivanus, P. sardus and P. balensis, which were not included in our analysis, the genus Plecotus comprises at least 19 more or less cryptic species. Phylogenetic and phenetic analyses resulted in similar but not completely concordant arrangements of the species. The proposed classification relies mainly on the tree based on 16S sequences. The current distribution indicates that 16 species can be linked to arboreal refugia, three to eremial refugia. We assume that speciation within the gleaning, rather slow flying long‐eared bats is due to a multitude of disruption and isolation processes within a formerly continuous range of the broad‐leaved Arcto‐Tertiary forest in which Plecotus probably originated. An exact calibrated molecular dating of the splits is not possible. The Early Oligocene age of the presumed ancestor of the Plecotini and a correlation of the molecular diversifications with palaeogeographic reconstructions suggest that the divergence of the two major lineages may have occurred already during the Middle Miocene, 14.5 Mya.
Calls of a Bird-Eater: The Echolocation Behaviour of the Enigmatic Greater Noctule, Nyctalus lasiopterus

The greater noctule (Nyctalus lasiopterus) is one of the rarest, least studied and the largest European bat. It feeds on large flying insects and also preys extensively on small night-migrating songbirds that it presumably intercepts at high altitude. The present study provides the first systematic account of echolocation behaviour and call design in the greater noctule. We documented variability in call duration from 1.4 to 25 ms and an associated strong variation in frequency parameters of echolocation calls. Greater noctules adapted call structure and repetition rate to the current perceptual task. In open space, they used calls with very low peak and terminal frequencies; generally below 15 kHz. We recorded echolocation calls from the sympatric — at least in Eastern Europe — smaller congener N. noctula. Our data suggest that acoustic separation of the two species is feasible. Therefore, acoustic monitoring could prove useful to survey distribution and habitat use of the enigmatic greater noctule. Using still lower call frequency than N. lasiopterus would yield larger detection ranges for large echolocation targets such as migratory birds for the greater noctule, while it might be constrained by the upper hearing threshold of passerines and thus the predator's potential conspicuousness to its prey. However, in a within-genus comparison, allometric scaling explained the greater noctules' call frequency to a very large extent, i.e., we found no evidence for specific adaptations of call frequency to bird hunting.
Stimulatory Role of SPAK Signaling in the Regulation of Large Conductance Ca2+-Activated Potassium (BK) Channel Protein Expression in Kidney

SPS1-related proline/alanine-rich kinase (SPAK) plays important roles in regulating the function of numerous ion channels and transporters. With-no-lysine (WNK) kinase phosphorylates SPAK kinase to active the SPAK signaling pathway. Our previous studies indicated that WNK kinases regulate the activity of the large-conductance Ca2+-activated K+ (BK) channel and its protein expression via the ERK1/2 signaling pathway. It remains largely unknown whether SPAK kinase directly modulates the BK protein expression in kidney. In this study, we investigated the effect of SPAK on renal BK protein expression in both HEK293 cells and mouse kidney. In HEK293 cells, siRNA-mediated knockdown of SPAK expression significantly reduced BK protein expression and increased ERK1/2 phosphorylation, whereas overexpression of SPAK significantly enhanced BK expression and decreased ERK1/2 phosphorylation in a dose-dependent manner. Knockdown of ERK1/2 prevented SPAK siRNA-mediated inhibition of BK expression. Similarly, pretreatment of HEK293 cells with either the lysosomal inhibitor bafilomycin A1 or the proteasomal inhibitor MG132 reversed the inhibitory effects of SPAK knockdown on BK expression. We also found that there is no BK channel activity in PCs of CCD in SPAK KO mice using the isolated split-open tubule single-cell patching. In addition, we found that BK protein abundance in the kidney of SPAK knockout mice was significantly decreased and ERK1/2 phosphorylation was significantly enhanced. A high-potassium diet significantly increased BK protein abundance and SPAK phosphorylation levels, while reducing ERK1/2 phosphorylation levels. These findings suggest that SPAK enhances BK protein expression by reducing ERK1/2 signaling-mediated lysosomal and proteasomal degradations of the BK channel.
Mutational Portrait of Lung Adenocarcinoma in Brazilian Patients: Past, Present, and Future of Molecular Profiling in the Clinic

Objectives: Approximately 60% of lung adenocarcinomas (LAs) carry mutations that can guide treatment with tyrosine-kinase inhibitors (TKI) and other targeted therapies. Data on activating mutations in EGFR and other tyrosine-kinase receptor (TKR) genes in highly admixed populations, such as that of Brazil, are scarce. In this study, we comprehensively analyzed the actionable alteration profile of LA in Brazilian patients. Materials and Methods: EGFR driver mutation data were collected from a large Brazilian LA cohort covering an 8-year period of molecular testing in a single institution. Tests were performed using three distinct methods, and demographic and histopathological data were analyzed. For a subset of patients, driver mutations in KRAS, NRAS, and BRAF and gene fusions involving TKR genes (before TKI treatment) and EGFR T790M (after TKI treatment) were assessed. Results: EGFR mutations were detected in 25% of 1,316 LAs evaluated, with exon 19 deletions and exon 21 L858R TKI sensitizing mutations representing 72.5% of all mutations. Mutation rates were higher in women and non-smokers (p < 0.001). Next-generation sequencing was very sensitive, with a lower rate of inconclusive results compared with Sanger sequencing and pyrosequencing. EGFR/RAS/BRAF hotspot gene panels were applied in 495 LA cases and detected oncogenic mutations in 51.3% of samples, most frequently in EGFR (22.4%) and KRAS (26.9%). In subgroups of 36 and 35 patients, gene fusions were detected in 11.1% of tumors and EGFR T790M resistance mutations were detected in 59% of plasma samples from patients previously treated with TKI, respectively. Conclusion: This report provides the first comprehensive actionable alteration portrait of LA in Brazil. The high rate of actionable alterations in EGFR and other driver genes in LA reinforces the need to incorporate TKI guided by molecular diagnostics into clinical routines for patients in both public and private healthcare systems.
Building Secure Urban Information Systems Based on IoT Technologies

An analysis of the state-of-the-art research on methods and tools for building secure urban information systems based on IoT technology reveals the increased interest of a wide range of researchers, the wide range of methods and means they offer to increase the level of security in such systems, and the high fragmentation and fragility of the proposed solutions. Analyzing and improving approaches to addressing security issues when building urban information systems based on IoT devices should be undertaken in the context of all levels of relevant security architecture, the mandatory and systematic implementation of generally accepted requirements that currently in place to build reliable and secure information systems. It is important to implement complex, systemic and architectural solutions with the aim of their complete and comprehensive implementation. Analyzing and improving approaches to addressing security issues when building urban infor-mation systems based on IoT devices should be undertaken in the context of all levels of relevant security architecture, the mandatory and systematic imple-mentation of generally accepted requirements that currently in place to build re-liable and secure information systems. A new formal model of security subsystem of information technology platform for process support in urban resource networks formed on the basis of analysis of basic security characteristics of IoT-devices, built on their information systems and proposed by the authors information technology platform architecture is presented in this paper.
3D Printed Thermoelectric Polyurethane/Multiwalled Carbon Nanotube Nanocomposites: A Novel Approach towards the Fabrication of Flexible and Stretchable Organic Thermoelectrics

Three-dimensional (3D) printing of thermoelectric polymer nanocomposites is reported for the first time employing flexible, stretchable and electrically conductive 3D printable thermoplastic polyurethane (TPU)/multiwalled carbon nanotube (MWCNT) filaments. TPU/MWCNT conductive polymer composites (CPC) have been initially developed employing melt-mixing and extrusion processes. TPU pellets and two different types of MWCNTs, namely the NC-7000 MWCNTs (NC-MWCNT) and Long MWCNTs (L-MWCNT) were used to manufacture TPU/MWCNT nanocomposite filaments with 1.0, 2.5 and 5.0 wt. %. 3D printed thermoelectric TPU/MWCNT nanocomposites were fabricated through a fused deposition modelling (FDM) process. Raman and scanning electron microscopy (SEM) revealed the graphitic nature and morphological characteristics of CNTs. SEM and transmission electron microscopy (TEM) exhibited an excellent CNT nanodispersion in the TPU matrix. Tensile tests showed no significant deterioration of the moduli and strengths for the 3D printed samples compared to the nanocomposites prepared by compression moulding, indicating an excellent interlayer adhesion and mechanical performance of the 3D printed nanocomposites. Electrical and thermoelectric investigations showed that L-MWCNT exhibits 19.8 ± 0.2 µV/K Seebeck coefficient (S) and 8.4 × 103 S/m electrical conductivity (σ), while TPU/L-MWCNT CPCs at 5.0 wt. % exhibited the highest thermoelectric performance (σ = 133.1 S/m, S = 19.8 ± 0.2 µV/K and PF = 0.04 μW/mK2) among TPU/CNT CPCs in the literature. All 3D printed samples exhibited an anisotropic electrical conductivity and the same Seebeck coefficient in the through- and cross-layer printing directions. TPU/MWCNT could act as excellent organic thermoelectric material towards 3D printed thermoelectric generators (TEGs) for potential large-scale energy harvesting applications.
Size-fractionated phytoplankton biomass in coral reef waters off Sesoko Island, Okinawa, Japan

The seasonal dynamics of size-fractionated phytoplankton biomass in a coral reef area were investigated off Sesoko Island, Okinawa, Japan. Chlorophyll (Chl) a and nutrient concentrations were low almost all year round, showing no clear seasonal variability with values similar to those in some other coral reef areas. Picoplankton dominated the phytoplankton community; average contributions of pico-, nano- and microplankton to the total Chl a biomass were 52, 34 and 11%, respectively. However, in 1998, when the seawater ttemperature was extremely high and coral bleaching occurred due to the ENSO event, low Chl a coupled with high nutrient concentrations were observed. This was associated with a decrease in the picoplankton size fraction. We suggest that the high seawater temperature in 1998 decreased the growth rate of the picoplankton; however, the micro- and nanoplankton may also be limited by other factors such as low nutrient concentrations.