Miracle-dz/UniFAR-FTUs huggingface dataset:
Steam Explosion Treatment of Byproduct Feedstuffs for Potential Use as Ruminant Feed

Simple Summary Feedstuffs, such as cassava alcohol residue or potato starchy residue, have not been traditionally used as ruminant feeds for commercial production due to high fiber content and low digestibility. Steam explosion treatment can break down lignocellulosic structural components with no (or few) chemical agents, is environmentally friendly, and uses little energy, which offers great potential for large-scale application. We studied the effect of steam explosion treatment on the chemical composition, in vitro digestibility, energy value, Cornell Net Carbohydrate and Protein System (CNCPS) composition of five byproduct feedstuffs, to provide a theoretical basis for the development and utilization of the steam explosion technique to produce ruminant feedstuff. The data revealed that steam explosion treatment improved the nutritive value and in vitro dry matter digestibility of cassava alcohol residues, distillers’ grains, rapeseed meal and potato starchy residue. Therefore, steam explosion treatment offers the potential to improve the suitability of these feedstuffs. Abstract Although many byproducts of milling industries have potential as a ruminant feed, they have not been widely used due to their low nutritive value, especially high-fiber content and difficult processing techniques. Steam explosion can increase the degradation of hemicellulose, cellulose and lignin and make byproduct feedstuffs more suitable as ruminant feed. Five byproduct feedstuffs: cassava alcohol residue (CAR), distillers’ grains (DG), cottonseed meal (CM), rapeseed meal (RM) and potato starchy residues (PSR), were steam-exploded using five different processing parameters and the effects on the chemical composition, in vitro digestibility, energy value, and Cornell Net Carbohydrate and Protein System composition were assessed in order to provide a theoretical basis for the technique’s development and utilization for ruminant feed production. In this study, after steam-explosion treatment, the nutritive value and in vitro dry matter digestibility (IVDMD) of CAR, DG, RM and PSR were improved (p < 0.05), while there was no effect on nutritive value of CM (p > 0.05). Specifically, steam explosion treatment decreased the contents of neutral detergent fiber, acid detergent fiber, available cell wall, and slowly degraded protein, and increased the total digestible nutrients, digestible energy, metabolic energy, net energy for maintenance, and net energy for gain, sugar, non-structural carbohydrate and IVDMD. Therefore, steam-explosion treatment offers the potential to improve the suitability of byproduct feedstuffs as ruminant feed.
Barriers to Access: A Feminist Analysis of Medically Assisted Dying and the Experience of Marginalized Groups

In this article, I argue that a holistic strategy is needed to ascertain how implicit bias, on the part of health-care providers, and structural impediments work together to produce significant barriers to access to medical assistance in dying for marginalized groups—particularly those experiencing intersecting or interlocking forms of identity-based oppressions. In doing so, I also make the case that this kind of primary, patient-centered, and institutional research could benefit from the insights of critical feminism and materialist feminist theory by highlighting and challenging inequalities, opening up debate, and exploring new forms of knowledge production. It also offers a way to shape future research of medical assistance in dying, as it relates specifically to the study of how overlapping forms of structural and interpersonal marginalization (e.g., implicit bias), inclusive of race, gender, class, ethnicity, dis/ability, sexuality, and so on are expressed and experienced.
The Role of the miR-21/SPRY2 Axis in Modulating Proangiogenic Factors, Epithelial Phenotypes, and Wound Healing in Corneal Epithelial Cells

Purpose Subconjunctival injection of antagomir-21 attenuates the progression of corneal neovascularization. We examined the underlying mechanism by investigating the regulation of microRNA (miR)-21 expression and the involvement of miR-21 in the homeostasis of corneal epithelial cells. Methods Corneal epithelial cells were cultured with TGF-β1 and/or under hypoxia conditions. miR-21 expression was measured by quantitative PCR. The direct targets of miR-21 were validated by the 3′-UTR luciferase reporter assay. Alterations of proangiogenic signaling and the epithelial-mesenchymal transition (EMT) phenotype after miR-21/Sprouty2 (SPRY2) knockdown were examined by Western blotting. The effect of conditioned medium on angiogenesis was assessed using the tube formation assay. Wound healing was evaluated by the migration and scratch assays. Results TGF-β1 or hypoxia upregulated miR-21, and miR-21 silencing abolished TGF-β1/hypoxia-induced hypoxia inducible factor (HIF)-1α and VEGF expression. miR-21 inhibited SPRY2 by directly targeting its 3′-UTR. Simultaneous silencing of miR-21 and SPRY2 significantly upregulated p-ERK, HIF-1α, and VEGF and promoted angiogenesis. Induction of miR-21 or inhibition of SPRY2 reduced the levels of cytokeratin (CK)-3 and CK-12 and promoted EMT. Transwell and wound healing assays indicated that miR-21 promoted cell migration. Conclusions TGF-β1 or hypoxia induced miR-21 and inhibited SPRY2, thereby enhancing proangiogenic signaling, suppressing the epithelial phenotype, and promoting wound healing in corneal epithelial cells.
Thermal tolerance in the urban heat island: thermal sensitivity varies ontogenetically and differs between embryos of two sympatric ectotherms

ABSTRACT Most studies of thermal tolerance use adults, but early-life stages (e.g. embryos) are often more sensitive to thermal agitation. Studies that examine effects on embryos rarely assess the potential for thermal tolerance to change with ontogeny or how effects differ among sympatric species, and often utilize unrealistic temperature treatments. We used thermal fluctuations from nests within the urban-heat island to determine how thermal tolerance of embryos changes across development and differs among two sympatric lizard species (Anolis sagrei and Anolis cristatellus). We applied fluctuations that varied in frequency and magnitude at different times during development and measured effects on embryo physiology and survival, and hatchling morphology, growth and survival. Thermal tolerance differed between the species by ∼2°C: embryos of A. sagrei, a lizard that prefers warmer, open-canopy microhabitats, were more robust to thermal stress than embryos of A. cristatellus, which prefers cooler, closed-canopy microhabitats. Moreover, thermal tolerance changed through development; however, the nature of this change differed between the species. For A. cristatellus, thermal tolerance was greatest mid-development. For A. sagrei, the relationship was not statistically clear. The greatest effects of thermal stress were on embryo and hatchling survival and embryo physiology. Hatchling morphology and growth were less affected. Inter-specific responses and the timing of stochastic thermal events with respect to development have important effects on embryo mortality. Thus, research that integrates ecologically meaningful thermal treatments, considers multiple life-history stages and examines interspecific responses will be critical to make robust predictions of the impacts of global change on wildlife. Summary: Embryos of two lizard species differ in thermal tolerance in ways that correspond with species-specific nest microhabitats and patterns of occupancy throughout the urban matrix.
Neuromuscular actuation of biohybrid motile bots

Significance Biohybrid machines have been developed using muscles to actuate soft robotic structures. We envision that the integration of neurons into the embodiment of such systems can transform them into intelligent machines which, for instance, could use sensory neurons to detect environmental cues then adaptively respond and orchestrate various motor patterns through their neural circuitry. However, achieving such sensory-motor modalities relies on the ability of neural units to command muscle activity, making actuation through motor neurons the first milestone. Here, we achieve this milestone and demonstrate neuromuscular actuation of a biohybrid swimmer. This paves the way for the development of biohybrid embodied platforms as models to gain deeper understanding of motor control, with potentially broad impact in robotics, bioengineering, and health. The integration of muscle cells with soft robotics in recent years has led to the development of biohybrid machines capable of untethered locomotion. A major frontier that currently remains unexplored is neuronal actuation and control of such muscle-powered biohybrid machines. As a step toward this goal, we present here a biohybrid swimmer driven by on-board neuromuscular units. The body of the swimmer consists of a free-standing soft scaffold, skeletal muscle tissue, and optogenetic stem cell-derived neural cluster containing motor neurons. Myoblasts embedded in extracellular matrix self-organize into a muscle tissue guided by the geometry of the scaffold, and the resulting muscle tissue is cocultured in situ with a neural cluster. Motor neurons then extend neurites selectively toward the muscle and innervate it, developing functional neuromuscular units. Based on this initial construct, we computationally designed, optimized, and implemented light-sensitive flagellar swimmers actuated by these neuromuscular units. Cyclic muscle contractions, induced by neural stimulation, drive time-irreversible flagellar dynamics, thereby providing thrust for untethered forward locomotion of the swimmer. Overall, this work demonstrates an example of a biohybrid robot implementing neuromuscular actuation and illustrates a path toward the forward design and control of neuron-enabled biohybrid machines.
The daily, weekly, and seasonal cycles of body temperature analyzed at large scale

ABSTRACT We performed large-scale analyses of circadian and infradian cycles of human body temperature, focusing on changes over the day, week, and year. Temperatures (n= 93,225) were collected using temporal artery thermometers from a Boston emergency department during 2009–2012 and were statistically analyzed using regression with cyclic splines. The overall mean body temperature was 36.7°C (98.1°F), with a 95% confidence interval of 36.7–36.7°C (98.1–98.1°F) and a standard deviation of 0.6°C (1.1°F). Over the day, mean body temperature followed a steady cycle, reaching its minimum at 6:00–8:00 and its maximum at 18:00–20:00. Across days of the week, this diurnal cycle was essentially unchanged, even though activities and sleeping hours change substantially during the weekly cycles of human behavior. Over the year, body temperatures were slightly colder in winter than summer (~0.2°C difference), consistent with most prior studies. We propose these seasonal differences might be due to ambient effects on body temperature that are not eliminated because they fall within the tolerance range of the thermoregulatory system. Over the year, bathyphase (daily time of minimum temperature) appeared to parallel sunrise times, as expected from sunrise’s zeitgeber role in circadian rhythms. However, orthophase (daily time of maximum temperature) and sunset times followed opposite seasonal patterns, with orthophase preceding nightfall in summer and following nightfall in winter. Throughout the year, bathyphase and orthophase remained separated by approximately 12 h, suggesting this interval might be conserved. Finally, although 37.0°C (98.6°F) is widely recognized as the mean or normal human body temperature, analysis showed mean temperature was <37.0°C during all times of day, days of the week, and seasons of the year, supporting prior arguments that the 37.0°C standard has no scientific basis. Overall, this large study showed robust and consistent behavior of the human circadian cycle at the population level, providing a strong example of circadian homeostasis.
The Impact of Semantic Relatedness on Associative Memory in Aging Depending on the Semantic Relationships between the Memoranda

ABSTRACT Background: Aging is characterized by a decline in associative memory. However, under some conditions, such as in the presence of semantic relatedness within the association, the age-related associative decline can be attenuated. In this study, we evaluated whether the nature of the semantic relationship between the memoranda (taxonomic versus thematic) could modulate the impact of semantic relatedness on older adults’ associative memory. Methods: We assessed 40 young adults and 40 older adults’ associative memory for associations that were either taxonomically-related, thematically-related, or unrelated. Results: While the main results showed age-related differences in all associative memory tasks without attenuation by semantic relatedness, the results after excluding 4 outlier older participants suggest that older adults’ associative memory performance did not differ from that of young adults for thematically-related pairs, while there was an age-related difference in associative memory for taxonomically-related pairs as well as for unrelated pairs. Discussion: This could suggest that the nature of the semantic relationship between the memoranda can modulate the impact of semantic relatedness on older adults’ associative memory performance, although the reason why this is not the case for all older participants still needs to be understood.
Conformational equilibrium defines the variable induction of the multidrug-binding transcriptional repressor QacR

Significance Multidrug resistance (MDR) constitutes a major obstacle in the treatment of infectious diseases, as well as human cancers, even in developed countries. This study deciphers the structural mechanism that dictates the promiscuous multidrug binding to the variable transcriptional regulation of QacR, the major multidrug-binding transcriptional repressor in pathogenic bacteria Staphylococcus aureus. The transcriptional level of the downstream transporter gene, qacA, is dynamically regulated by QacR via the relative populations of inducive versus repressive conformations in the molecule. The conformational equilibrium also defines the basal activity of the MDR system, as well as the elevated transcription levels with the constitutively active mutants. Our structural definition provides an important advance in understanding and potentially targeting the MDR system. QacR, a multidrug-binding transcriptional repressor in pathogenic bacteria Staphylococcus aureus, modulates the transcriptional level of the multidrug transporter gene, qacA, in response to engaging a set of diverse ligands. However, the structural basis that defines the variable induction level remains unknown. Here, we reveal that the conformational equilibrium between the repressive and inducive conformations in QacR defines the induction level of the transporter gene. In addition, the unligated QacR is already partly populated in the inducive conformation, allowing the basal expression of the transporter. We also showed that, in the known constitutively active QacR mutants, the equilibrium is shifted more toward the inducive conformation, even in the unligated state. These results highlight the unexpected structural mechanism, connecting the promiscuous multidrug binding to the variable transcriptional regulation of QacR, which provide clues to dysfunctioning of the multidrug resistance systems.
Healing at Molar Extraction Sites Using Freeze-Dried Bone Allograft and Collagen Wound Dressing: Case Series and Three-Arm Analyses.

PURPOSE Ridge preservation limits dimensional changes after tooth extraction. However, it is still unclear if using a membrane may be advantageous over a collagen wound dressing. Therefore, the goal of this report was to evaluate the outcomes of ridge preservation using freeze-dried bone allograft with a collagen wound dressing. MATERIALS AND METHODS This study included 21 patients who had one molar extracted, and the site received ridge preservation using freeze-dried bone allograft and a collagen wound dressing (test 2 group). Patients had two standardized cone beam computed tomography (CBCT) scans, taken within 72 hours and 3 months after extraction, to measure changes in ridge height and width, and buccal and lingual plate thicknesses. Changes in keratinized tissue width were recorded. Three-arm analyses were performed using historic data from a previous randomized controlled trial by the same study group, in which 20 molar sites received a collagen wound dressing alone (control) and 20 received ridge preservation with freeze-dried bone allograft and a dense polytetrafluoroethylene membrane (test 1) using the same methodology. RESULTS There was a statistically significant difference in mean buccal ridge height changes between the control group (2.6 ± 2.06 mm) and test 2 group (1.55 ± 0.93 mm) but no difference in ridge and keratinized tissue width changes between groups. No correlation was found between buccal plate thickness and ridge width change. CONCLUSION Freeze-dried bone allograft with collagen wound dressing as a barrier was used successfully for ridge preservation in intact molar extraction sites (< 50% bone loss) and can be considered as a treatment alternative to freeze-dried bone allograft with a dense polytetrafluoroethylene membrane.
Jingshu Keli and Its Components Notoginsenoside R1and Ginsenoside Rb1 Alleviate the Symptoms of Cervical Myelopathy through Kir3.1 Mediated Mechanisms.

ervical spondylotic myelopathy (CSM) is one of the most serious spinal cord disorders in adults. Pharmacological modulation of ion channels is a common strategy to interfere with CSM and prevent neuronal damage. Here, we investigated the effects of Jingshu Keli (JSKL), a traditional Chinese herbal formula, on CSM-related gait abnormality, mechanical allodynia and thermal hyperalgesia, and assessed the neuronal mechanisms of JSKL on cultured brainstem cells. Behavioral tests and patch clamp recordings were performed to make this assessment. In our study, we found that JSKL significantly recovered the gait performance (P<0.001) and decreased the levels of mechanical pain in 18.9% (P<0.01) and thermal pain in 18.1% (P<0.05). Further investigation suggested that JSKL and its containing ginsenoside Rb1 (GRb1), notoginsenoside R1 (NGR1) reduced the action potential frequency in 38.5%, 27.2%, 25.9%, and hyperpolarized resting membrane potential in 15.0%, 13.8%, 12.1%, respectively. Kir channels, not KV channels and KCa channels, were the major intermediate factors achieving treatment effects. Finally, immunostaining results showed that the phosphorylation of Kir3.1 was promoted, whereas the total expression level did not change. Our study reveals a novel strategy of treating CSM by using traditional Chinese medicines (TCMs) containing active components.
Using Tetracysteine-Tagged TDP-43 with a Biarsenical Dye To Monitor Real-Time Trafficking in a Cell Model of Amyotrophic Lateral Sclerosis

TAR DNA-binding protein 43 (TDP-43) has been identified as the major constituent of the proteinaceous inclusions that are characteristic of most forms of amyotrophic lateral sclerosis (ALS) and ubiquitin positive frontotemporal lobar degeneration (FTLD). Wild type TDP-43 inclusions are a pathological hallmark of >95% of patients with sporadic ALS and of the majority of familial ALS cases, and they are also found in a significant proportion of FTLD cases. ALS is the most common form of motor neuron disease, characterized by progressive weakness and muscular wasting, and typically leads to death within a few years of diagnosis. To determine how the translocation and misfolding of TDP-43 contribute to ALS pathogenicity, it is crucial to define the dynamic behavior of this protein within the cellular environment. It is therefore necessary to develop cell models that allow the location of the protein to be defined. We report the use of TDP-43 with a tetracysteine tag for visualization using fluorogenic biarsenical compounds and show that this model displays features of ALS observed in other cell models. We also demonstrate that this labeling procedure enables live-cell imaging of the translocation of the protein from the nucleus into the cytosol.
The Histochemical Alterations of Mucin in Colorectal Carcinoma Quantified by Two Efficient Algorithms of Digital Image Analysis

The practical use of knowledge on the diagnostic-prognostic role of polysaccharide components of mucins in colorectal cancer (CRC) has been difficult, due to the number of histochemical (HC) reaction types, as well as lack of standard methods of computer-assisted analysis of tissue expression of these molecules. Using two algorithms of digital image analysis (by application of Image-Pro Premier and our originally designed program Filter HSV), we evaluated the expression of polysaccharides in tissue samples of CRC patients (n = 33), and fragments of normal colorectal tissue from the same patients (control) using periodic acid Schiff reaction (PAS) (neutral mucins) and alcian blue staining (AB) (acidic mucins). Our results indicate lower expression of the PAS+ and AB+ mucins in CRC, as compared to the control samples. The higher expression of PAS+ polysaccharides was detected in flat tumors than in protruded CRC, while higher AB+ mucins expression was a feature of mucinous CRC subtypes. Positive correlation between mutual PAS+ and AB+ expression, as well as correlations with glucose concentration (PAS+ mucins), and hemoglobin level (AB+ mucins) were observed exclusively in unchanged colorectal samples (control). Both algorithms of digital image analysis (smart segmentation and Filter HSV) work properly and can be used interchangeably in daily practice of pathologists, as useful tools of quantitative evaluation of HC reaction in both normal and cancerous tissues.
Relationship between obesity and blood pressure among employees in the Vhembe district municipality of Limpopo Province, South Africa.

OBJECTIVE The aim of this study was to investigate the relationship between obesity and blood pressure among employees of the Vhembe district municipality of Limpopo province. METHODS A cross-sectional study was conducted among 452 local government employees (207 males, 245 females) aged 24-65 years. Body mass index (BMI), blood pressure (BP) and waist circumference (WC) measurements, and waist-to-height ratio (WHtR) were assessed. Data were analysed using Statistical Package for Social Sciences (SPSS) statistics, version 21. RESULTS The results showed that 27% of the participants were classified as overweight and 34% as obese, with females being more overweight and obese (29 and 48%, respectively) compared to males (24 and 17%, respectively). Twenty-five per cent of the participants were hypertensive, with females (27%) showing a higher prevalence compared to males (22%). Based on BMI categories, the obese group (35%) had a higher prevalence of hypertension in contrast to groups that were of normal weight (18%) and overweight (22%). The results also showed that systolic blood pressure (SBP) was positively (p ≤ 0.05) correlated with BMI (r = 0.15), WC (r = 0.26) and WHtR (r = 0.29) in the normal and overweight groups (WC, r = 0.23 and WHtR, r = 0.26), and WHtR correlated with SBP (r = 0.26) and diastolic blood pressure (DBP) (r = 0.19). CONCLUSIONS The study showed a high prevalence of overweight, obesity and hypertension, with females more affected than their male counterparts. BMI, WC and WHtR were positively correlated with SBP in the normal and overweight groups, with WHtR positively correlated with both SBP and DBP in the overweight group. Therefore, it is recommended that intervention regimes designed to address obesity and hypertension should consider risk awareness for cardiovascular diseases, impaired quality of life and productivity among local government employees.