Miracle-dz/UniFAR-FTUs huggingface dataset:
Eggshell Spotting does not Predict Male Incubation but Marks Thinner Areas of a Shorebird's Shells

ABSTRACT. Many birds lay eggs speckled with black or reddish-brown spots of protoporphyrin pigment, but the function of these spots is debated. Two recent hypotheses have received considerable attention. Under the “signaling-function hypothesis,” speckling reflects female quality and influences allocation of male parental care; under the “structural-function hypothesis,” the speckles strengthen the eggshell when calcium is scarce. The evidence for each is taxonomically uneven. For instance, evidence for the signaling-function hypothesis comes from cavity-nesting and uniparentally incubating species in which the viewing conditions and possibilities for males to assess the speckling are limited, and male response to speckling is indirect (i.e., female-feeding) or postponed (i.e., chickfeeding). We tested the predictions of both hypotheses in a biparentally incubating ground-nesting shorebird, the Northern Lapwing (Vanellus vanellus), in which the potential for a direct male response to eggshell speckling exists and visual inspection of the eggs is not hindered by light availability in a nest cavity. The speckling parameters (spot intensity, distribution, and cover) were repeatable within Northern Lapwing clutches, a requirement for a sexually selected signal, but we found no relationship between male incubation and speckling. However, the spots were associated with thinner areas of eggshell, which strongly supports the suggestion of a structural (strengthening) function. Our results do not support the signaling-function hypothesis of eggshell speckling, but extend the structural-function hypothesis and prior findings (that speckling occurs primarily at thinner areas of the shell) to other avian taxa. Furthermore, if the generally accepted view that Northern Lapwing eggs are cryptically marked is correct, our findings suggest that more than one significant function can drive the evolution of avian eggshell pigmentation.
NfL as a biomarker for neurodegeneration and survival in Parkinson disease

Objective To determine whether neurofilament light chain protein in CSF (cNfL), a sensitive biomarker of neuroaxonal damage, reflects disease severity or can predict survival in Parkinson disease (PD). Methods We investigated whether disease severity, phenotype, or survival in patients with new-onset PD correlates with cNfL concentrations around the time of diagnosis in the population-based New Parkinsonism in Umeå (NYPUM) study cohort (n = 99). A second, larger new-onset PD cohort (n = 194) was used for independent validation. Association of brain pathology with the cNfL concentration was examined with striatal dopamine transporter imaging and repeated diffusion tensor imaging at baseline and 1 and 3 years. Results Higher cNfL in the early phase of PD was associated with greater severity of all cardinal motor symptoms except tremor in both cohorts and with shorter survival and impaired olfaction. cNfL concentrations above the median of 903 ng/L conferred an overall 5.8 times increased hazard of death during follow-up. After adjustment for age and sex, higher cNfL correlated with striatal dopamine transporter uptake deficits and lower fractional anisotropy in diffusion tensor imaging of several axonal tracts. Conclusions cNfL shows usefulness as a biomarker of disease severity and to predict survival in PD. The present results indicate that the cNfL concentration reflects the intensity of the neurodegenerative process, which could be important in future clinical trials. Classification of evidence This study provides Class II evidence that in patients with PD, cNfL concentrations are associated with more severe disease and shorter survival.
Mutations in the acetolactate synthase genes of sulfonylurea-resistant biotypes of Lindernia spp.

Acetolactate synthase (ALS) is a key enzyme in the biosynthetic pathway of branched-chain amino acids. A mutation of the ALS gene causing amino acid substitution at the position of proline in Domain A makes ALS less sensitive to sulfonylureas, which are ALS-inhibiting herbicides. We cloned partial ALS genes from four Lindernia plants, L. dubia var. dubia, L. dubia var. major, L. micrantha and L. procumbens, for which biotypes resistant to sulfonylureas have been found in paddy fields. The clones were classified into two groups in each Lindernia plant: Als1 and Als2. Sequencing of the clones and alignment of deduced amino acid sequences with previously reported ALS of other species suggested that the cloned region contains an intron in both Als1 and Als2. Comparison of Als1 between resistant and susceptible biotypes showed that the proline of Domain A was replaced by alanine, serine or glutamine in all resistant biotypes of Lindernia plants, while it was conserved in all susceptible biotypes. This amino acid substitution in ALS encoded by Als1 is involved in the resistant mechanism of ALS to sulfonylurea in the four Lindernia plants.
Tensile Creep Model of Slab Concrete Based on Microprestress-Solidification Theory

Tensile creep is an important factor affecting the early cracking resistance of concrete. The tensile creep model can effectively predict the development of tensile creep. In order to establish an appropriate tensile creep model, a temperature–stress testing machine (TSTM) was employed to test the development of temperature, deformation and restraint stress of benchmark concrete and concrete mixed with the MgO under different temperature curing modes. The development law of early age stress, strain and creep was analyzed via the test data of the TSTM. The early age tensile creep of concrete was predicted with the existing Kelvin creep model. The effect of variable temperature on creep was considered in this study, and an improved Kelvin creep model was proposed. The prediction accuracy of the two models was compared and analyzed. The results indicate that MgO has little influence on the creep and specific creep of concrete. The early age cracking resistance of MgO concrete is better than benchmark concrete. The improved Kelvin model based on the microprestress-solidification (MPS) theory predicts the early tensile creep of concrete more accurately in variable temperature conditions. These are significantly helpful for the application of the MgO expansion agent in dam engineering.
SARS-CoV-2 as a Factor to Disbalance the Renin–Angiotensin System: A Suspect in the Case of Exacerbated IL-6 Production

Fever in infections correlates with inflammation, macrophage infiltration into the affected organ, macrophage activation, and release of cytokines involved in immune response, hematopoiesis, and homeostatic processes. Angiotensin-converting enzyme 2 (ACE2) is the canonical cell surface receptor for SARS-CoV-2. ACE2 together with angiotensin receptor types 1 and 2 and ACE2 are components of the renin–angiotensin system (RAS). Exacerbated production of cytokines, mainly IL-6, points to macrophages as key to understand differential COVID-19 severity. SARS-CoV-2 may modulate macrophage-mediated inflammation events by altering the balance between angiotensin II, which activates angiotensin receptor types 1 and 2, and angiotensin 1–7 and alamandine, which activate MAS proto-oncogene and MAS-related D receptors, respectively. In addition to macrophages, lung cells express RAS components; also, some lung cells are able to produce IL-6. Addressing how SARS-CoV-2 unbalances RAS functionality via ACE2 will help design therapies to attenuate a COVID-19–related cytokine storm.
Signaling by AWC Olfactory Neurons Is Necessary for Caenorhabditis elegans’ Response to Prenol, an Odor Associated with Nematode-Infected Insects

Chemosensation plays a role in the behaviors and life cycles of numerous organisms, including nematodes. Many guilds of nematodes exist, ranging from the free-living Caenorhabditis elegans to various parasitic species such as entomopathogenic nematodes (EPNs), which are parasites of insects. Despite ecological differences, previous research has shown that both EPNs and C. elegans respond to prenol (3-methyl-2-buten-1-ol), an odor associated with EPN infections. However, it is unclear how C. elegans responds to prenol. By utilizing natural variation and genetic neuron ablation to investigate the response of C. elegans to prenol, we found that the AWC neurons are involved in the detection of prenol and that several genes (including dcap-1, dcap-2, and clec-39) influence response to this odorant. Furthermore, we identified that the response to prenol is mediated by the canonically proposed pathway required for other AWC-sensed attractants. However, upon testing genetically diverse isolates, we found that the response of some strains to prenol differed from their response to isoamyl alcohol, suggesting that the pathways mediating response to these two odorants may be genetically distinct. Further, evaluations leveraging natural variation and genome wide association revealed specific genes that influence nematode behavior and provide a foundation for future studies to better understand the role of prenol in nematode behavioral ecology.
Cancer Stem Cells – Basic Concepts

There is growing evidence that tumours display a hierarchy similar to normal tissues. A small population of cancer stem cells is supposed to perpetuate tumour growth. These cells self-renew and are highly tumourigenic upon injection into immunocompromised animals, yielding tumours largely identical to those from which they were derived. Cancer stem cells exhibit a high degree of chemoresistance due to slow cycling and constitutive expression of multiple members of the adenosine triphosphate (ATP)-binding cassette (ABC) family of transporters. An increasing number of tumours with tumour stem cells have been identified by now, including breast, brain, colon and prostate cancers, as well as leukaemias. Detailed characterization of cancer stem cells may contribute to a better understanding of the underlying biology of the respective tumours and lead to novel curative therapies. Keywords: cancer stem cells; tumour heterogeneity; stem cell niche; cancer cell lines; tumour therapy
Artemisia annua, a Traditional Plant Brought to Light

Traditional remedies have been used for thousand years for the prevention and treatment of infectious diseases, particularly in developing countries. Of growing interest, the plant Artemisia annua, known for its malarial properties, has been studied for its numerous biological activities including metabolic, anti-tumor, anti-microbial and immunomodulatory properties. Artemisia annua is very rich in secondary metabolites such as monoterpenes, sesquiterpenes and phenolic compounds, of which the biological properties have been extensively studied. The purpose of this review is to gather and describe the data concerning the main chemical components produced by Artemisia annua and to describe the state of the art about the biological activities reported for this plant and its compounds beyond malaria.
Gestational Diabetes Mellitus: A Harbinger of the Vicious Cycle of Diabetes

Gestational diabetes mellitus (GDM), characterized by a transitory form of diabetes induced by insulin resistance and pancreatic β-cell dysfunction during pregnancy, has been identified as one of the major obstacles in achieving improved maternal and child health. Approximately 9–25% of pregnancies worldwide are impacted by the acute, long-term, and transgenerational health complications of this disease. Here, we discuss how GDM affects longstanding maternal and neonatal outcomes, as well as health risks that likely persist into future generations. In addition to the current challenges in the management and diagnosis of and the complications associated with GDM, we discuss current preclinical models of GDM to better understand the underlying pathophysiology of the disease and the timely need to increase our scientific toolbox to identify strategies to prevent and treat GDM, thereby advancing clinical care.
Long term change of the optic disc and OCT parameters during myopic shift in children with large cup to disc ratio

Purpose This observational case series was to determine long term optic disc changes in eyes with large cup to disc ratio (CDR) and compare the changes induced by myopic shift during childhood with normal control eyes. Methods Children under 15 years of age who developed myopia with serial optic disc photographs and spectral domain (SD)-optical coherence tomography (OCT) images with a minimal interval of three years were evaluated. Children with average CDR ≥ 0.6 on SD-OCT were classified as having large CDR. The ratios of vertical disc diameter (VDD), horizontal disc diameter (HDD), and maximum peripapillary atrophy (PPA) width (PPW) were measured to quantify morphologic changes of optic discs and SD-OCT parameters, such as peripapillary retinal nerve fiber layer (RNFL) thickness and macular ganglion cell and inner plexiform layer (GCIPL) thickness were measured. Results Of the 82 eyes (82 patients) analyzed, 42 eyes had large CDR and 40 eyes were normal controls. The mean age and refractive error at initial examination were not different between groups (P = 0.33, P = 0.76, respectively). The changes in HDD/VDD and PPW/VDD ratios during follow-up showed no significant difference among the groups (P = 0.45, P = 0.62, respectively). No statistical significance was found in changes in RNFL and GCIPL thickness between the two groups (P = 0.74, P = 0.79, respectively). Conclusions Children with enlarged CDR showed changes in optic disc morphology and RNFL/GCIPL thickness similar to normal children during myopic shift.
The Effect of Dihydromyricetin, a Natural Flavonoid, on Morphine-induced Conditioned Place Preference and Physical Dependence in Mice

Abstract Objective Dihydromyricetin (DHM), a natural flavonoid, is used to reduce alcohol hangover. It has a modulatory role on GABAA receptors with significant effects on seizure and anxiety in animal models. We aimed to evaluate the effect of DHM on morphine conditioned place preference (CPP) and withdrawal sings following morphine dependence using animal models. Methods The effect of DHM (1, 2 and 5 mg/kg, intraperitoneal; ip) on the acquisition and expression of morphine-induced CPP was evaluated in male mice. Administration of morphine for three consecutive days induced physical dependence. The withdrawal signs such as jumping and defecation were precipitated by administration of naloxone (8 mg/kg, ip). The effect of DHM on the development of physical dependence was assessed by injection of DHM before morphine administrations. Results DHM, at the dose of 5 mg/kg, reduced expression of morphine CPP with an increase in the locomotor activity. DHM, at the doses of 2 and 5 mg/kg, also reduced development of morphine CPP. DHM alleviated development of morphine-induced physical dependence at the dose of 1, 2, and 5 mg/kg by decreasing jumping and defecation. Conclusion These results indicated that DHM decreased acquisition and expression of morphine CPP and inhibited development of morphine-induced physical dependence.
Application of artificial intelligence using a convolutional neural network for diagnosis of early gastric cancer based on magnifying endoscopy with narrow‐band imaging

Magnifying endoscopy with narrow‐band imaging (ME‐NBI) has made a huge contribution to clinical practice. However, acquiring skill at ME‐NBI diagnosis of early gastric cancer (EGC) requires considerable expertise and experience. Recently, artificial intelligence (AI), using deep learning and a convolutional neural network (CNN), has made remarkable progress in various medical fields. Here, we constructed an AI‐assisted CNN computer‐aided diagnosis (CAD) system, based on ME‐NBI images, to diagnose EGC and evaluated the diagnostic accuracy of the AI‐assisted CNN‐CAD system.
Usability of MyFireWatch for non-expert users measured by eyetracking

MyFireWatch is a public-access fire information system that shows the location of satellitederived hotspots on a map layer. Originally developed for expert users, MyFireWatch was created with a user-centred design methodology. This paper describes a study of the onscreen viewing behaviour of nonexpert users of MyFireWatch, using eye-tracking technology to observe their use of the system. Non-experts between 20 and 80 years of age were able to use the online system to locate current fires and burnt areas. This validated the design. The study showed that younger users appeared more familiar with interactive map conventions that allowed them to search more quickly than older users. However, older users were able to substitute their prior navigation knowledge for some features. Using aggregated eye-tracking data for different areas of interest on the MyFireWatch interface, maps and fire information functions were viewed by participants the most. Areas on the interface containing menu bars and logos were viewed the least. This paper considers the usability for nonexperts of an interactive map designed to visualise the location of remotely sensed fires.
Perinatal Docosahexaenoic Acid Supplementation Improves Cognition and Alters Brain Functional Organization in Piglets

Epidemiologic studies associate maternal docosahexaenoic acid (DHA)/DHA-containing seafood intake with enhanced cognitive development; although, it should be noted that interventional trials show inconsistent findings. We examined perinatal DHA supplementation on cognitive performance, brain anatomical and functional organization, and the brain monoamine neurotransmitter status of offspring using a piglet model. Sows were fed a control (CON) or a diet containing DHA (DHA) from late gestation throughout lactation. Piglets underwent an open field test (OFT), an object recognition test (ORT), and magnetic resonance imaging (MRI) to acquire anatomical, diffusion tensor imaging (DTI), and resting-state functional MRI (rs-fMRI) at weaning. Piglets from DHA-fed sows spent 95% more time sniffing the walls than CON in OFT and exhibited an elevated interest in the novel object in ORT, while CON piglets demonstrated no preference. Maternal DHA supplementation increased fiber length and tended to increase fractional anisotropy in the hippocampus of offspring than CON. DHA piglets exhibited increased functional connectivity in the cerebellar, visual, and default mode network and decreased activity in executive control and sensorimotor network compared to CON. The brain monoamine neurotransmitter levels did not differ in healthy offspring. Perinatal DHA supplementation may increase exploratory behaviors, improve recognition memory, enhance fiber tract integrity, and alter brain functional organization in offspring at weaning.
Doppelgängers on the Dark Web: A Large-scale Assessment on Phishing Hidden Web Services

Anonymous network services on the World Wide Web have emerged as a new web architecture, called the Dark Web. The Dark Web has been notorious for harboring cybercriminals abusing anonymity. At the same time, the Dark Web has been a last resort for people who seek freedom of the press as well as avoid censorship. This anonymous nature allows website operators to conceal their identity and thereby leads users to have difficulties in determining the authenticity of websites. Phishers abuse this perplexing authenticity to lure victims; however, only a little is known about the prevalence of phishing attacks on the Dark Web. We conducted an in-depth measurement study to demystify the prevalent phishing websites on the Dark Web. We analyzed the text content of 28,928 HTTP Tor hidden services hosting 21 million dark webpages and confirmed 901 phishing domains. We also discovered a trend on the Dark Web in which service providers perceive dark web domains as their service brands. This trend exacerbates the risk of phishing for their service users who remember only a partial Tor hidden service address. Our work facilitates a better understanding of the phishing risks on the Dark Web and encourages further research on establishing an authentic and reliable service on the Dark Web.
Conservation implications of a long‐term decline in body condition of the Brothers Island tuatara (Sphenodon guntheri)

Understanding the factors that drive the dynamics of remnant populations of long‐lived species presents a unique challenge for conservation management. The long‐lived Brothers Island tuatara Sphenodon guntheri is represented by one natural, self‐sustaining population on 4‐ha North Brother Island, New Zealand, and two small, translocated populations. The North Brother Island population was almost driven to extinction by extreme habitat modification and collecting in the late 19th century. Analysis of a long‐term (1957–2001) dataset, following the population's recovery, reveals a significant decline in tuatara body condition over time, which is more pronounced in females. Declining body condition, coupled with very low reproductive output, may be symptomatic of a density‐dependent response to elevated population size exacerbated by resource limitation. Sex‐specific effects that disadvantage females could compromise this small population, particularly as it exhibits a male‐biased sex ratio. We recommend removal of infrequently used structures and habitat restoration to alleviate intense resource competition. Population‐level manipulation should be considered if future monitoring indicates an increasingly male‐biased sex ratio and continued decline of female body condition.
Microbial recovery of metals from solids

A variety of both lithotrophic and organotrophic microorganisms are known to mediate the mobilization of various elements from solids mostly by the formation of inorganic and organic acids. Under appropriate environmental conditions, metals are solubilized and extracted from metal-rich materials in subsurface ecosystems by the action of bacteria and fungi. In mine tailings or landfills microbial metal leaching represents a potential environmental hazard. However, these microbial activities can be successfully applied in the industry for the recovery of metals from solid materials such as ores or incineration residues. Microbial leaching processes are currently used for the winning of gold and copper from low-grade ores (‘bioleaching’). Solid industrial waste materials such as fly ash, sludges, or dust might also be microbially treated to recover metals for the re-use in metal-manufacturing industries. Bioleaching allows the cycling of metals by a process close to natural biogeochemical cycles reducing the demand for resources such as ores, energy, or landfill space.
The role of the brain in farmed fish

As is well known, optimal levels of both homeostasis and welfare of farmed fish are almost completely dependent upon human endeavour to investigate fish brain capacities and utilize them for the greatest benefit. According to the accumulated research experience specifically concerning minimization of farmed fish stress, the final outcome of the involved mechanisms is strongly associated with fish species and biological stage as well as a number of rearing environment parameters related to the type of the production system applied. Based on the conclusions gained, it is clear that the fish brain-neuroendocrinological system is an extraordinarily rich and expressive one forming a species-specific living ethology that incorporates cognitive behaviour and ‘demands’, the whole constituting, in effect, the fish “personality”. The diverse facets of this ‘personality’ are expressed via a wide range of phenomena: e.g. the power of learning, memorizing, sound production, particular external coloration changes, courtship behaviour, parent care and “emotional feelings” including the manifestation of aggressiveness and the demonstration of “happiness”. The final conclusion to be drawn is that fish are indeed amazing creatures. One can only marvel at the superb plasticity of their brain which, over hundreds of millions of years and through myriad genomic, evolutionary and epigenetic developments, has enabled them to adapt and respond to and remarkably thrive in all extremes of environments, and all this though they lack a cerebral neocortex.