Miracle-dz/UniFAR-FTUs huggingface dataset:
MSS2 maintains mitochondrial function and is required for chitosan resistance, invasive growth, biofilm formation and virulence in Candida albicans

ABSTRACT Candida albicans is the most prevalent fungal pathogen in humans, particularly in immunocompromised patients. In this study, by screening a C. albicans mutant library, we first identified that the MSS2 gene, an ortholog of Saccharomyces cerevisiae MSS2 required for mitochondrial respiration, mediates chitosan resistance. Upon treatment with 0.2% chitosan, the growth of mss2Δ strains was strikingly impaired, and MSS2 expression was significantly repressed by chitosan. Furthermore, mss2Δ strains exhibited slow growth on medium supplemented with glycerol as the sole carbon source. Similar to the chitosan-treated wild-type strain, the mss2Δ strain exhibited a significantly impaired ATP production ability. These data suggest that an antifungal mechanism of chitosan against C. albicans acts by inhibiting MSS2 gene expression, leading to repression of mitochondrial function. Normal respiratory function is suggested to be required for fungal virulence. Interestingly, the mss2Δ mutant strains exhibited significantly impaired invasive ability in vitro and ex vivo but retained normal hyphal development ability in liquid medium. Furthermore, the MSS2 deletion strains could not form robust biofilms and exhibited significantly reduced virulence. Collectively, these results demonstrated that the antifungal effect of chitosan against C. albicans is mediated via inhibition of mitochondrial biogenesis. These data may provide another strategy for antifungal drug development via inhibition of fungal mitochondria.
Novel approaches to fertility restoration in women with premature ovarian insufficiency

Abstract The diagnosis of premature ovarian insufficiency (POI) brings with it the loss of fertility, an immediate concern for many affected women, and a future one for many others. While there is a low natural conception rate, for most the choice is between oocyte donation and alternative methods of family building such as adoption. There is, however, a lot of research into novel methods for increasing or restoring the fertility of women with POI, which are discussed in this review. Many approaches involve the use of mesenchymal stem cells, from a variety of sources including bone marrow, placenta and umbilical cord, and menstrual blood. These seem to have efficacy in animal models of POI, although through unclear mechanisms. Activation of remaining primordial follicles is also being explored, through physical or chemical manipulation of key regulatory pathways, notably the phosphoinositide 3-kinase (PI3K)/AKT/mammalian target of rapamycin (mTOR) and Hippo pathways. Much of the clinical data are uncontrolled, and mostly in women with a reduced ovarian reserve rather than POI, as are the results thus far for administration of platelet-rich plasma. Clinical studies with appropriate controls are needed to substantiate the preliminary claims of effectiveness of these approaches.
Differentially methylated regions (DMRs) in PON3 gene between responders and non-responders to a weight loss dietary intervention: a new tool for precision management of obesity

ABSTRACT Differentially methylated regions (DMR) are genomic regions with different methylation status. The aim of this research was to identify DMRs in subjects with obesity that predict the response to a weight-loss dietary intervention and its association with metabolic variables. Based on the change in body mass index (BMI), 201 subjects with overweight and obesity were categorized in tertiles according to their response to a hypocaloric diet: Responders (R; n = 64) and Non-Responders (NR; n = 63). The R group lost 4.55 ± 0.91 BMI units (kg/m2) and the NR group lost 1.95 ± 0.73 kg/m2 (p < 0.001). DNA methylation was analysed in buffy coat through a methylation array at baseline. DMRs were analysed using a function of ChAMP (Chip Analysis Methylation Pipeline) in R software. Baseline DNA methylation analysis between R and NR exhibited a DMR located at paraoxonase 3 gene (PON3) consisting of 13 CpG sites, eleven of them significantly hypermethylated in R. To analyse the implication of these 11 CpGs on weight loss, a z-score was performed as a measure of DMR methylation. This analysis showed a correlation between PON3 DNA methylation and BMI loss. This z-score negatively correlated with PON3 protein serum levels. Total paraoxonase activity in serum was not different between groups, but PON enzymatic activity positively correlated with oxidized LDL levels. The present study identified a DMR within PON3 gene that is related to PON3 protein levels in serum, and that could be used as a potential biomarker to predict the response to weight-loss dietary interventions.
Identification of novel potential cyclooxygenase-2 inhibitors using ligand- and structure-based virtual screening approaches

Abstract Cyclooxygenase 2 (COX-2) is a well-established target for the design of anti-inflammatory intermediates. Celecoxib was selected as a template molecule to perform ligand-based virtual screening, i.e. to search for structures with similarity in shape and electrostatic potential, with a gradual increase in accuracy through the combined fitting of several steps using eight commercial databases. The molecules ZINC408709 and ZINC2090319 reproduced values within the limits established in an initial study of absorption and distribution in the body. No alert was fired for possible toxic groups when these molecules were subjected to toxicity prediction. Molecular docking results with these compounds showed a higher binding affinity in comparison to rofecoxib for the COX-2 target. Additionally, ZINC408709 and ZINC2090319 were predicted to be potentially biologically active. In in silico prediction of endocrine disruption potential, it was established that the molecule ZINC2090319 binds strongly to the target related to cardiovascular risk in a desirable way as a non-steroidal antagonist and ZINC408709 binds strongly to the target that is associated with the treatment of inflammatory pathologies and similar to celecoxib. Metabolites generated from these compounds are less likely to have side effects. Simulations were used to evaluate the interaction of compounds with COX-1 and COX-2 during 200 ns. Despite the differences, ZINC408709 molecule showed better stability for COX-2 during molecular dynamics simulation. In the calculations of free energy MM/PBSA, the molecule ZINC408709 ΔGbind value has a higher affinity to celecoxib and rofecoxib COX-2. This demonstrates that the selected substances can be considered as promising COX-2 inhibitors. Communicated by Ramaswamy H. Sarma
Assessing the occurrence of the novel zoonotic variegated squirrel bornavirus 1 in captive squirrels in Germany —A prevalence study

The newly described zoonotic variegated squirrel bornavirus 1 (VSBV‐1) in German squirrel holdings has been associated with the death of three private owners and one zoo animal caretaker (confirmed cases). Epidemiological investigations were severely impeded by the general lack of data on holdings of the putative reservoir hosts, the family Sciuridae. To fill this lack of data for detailed epidemiological investigations of the captive squirrel population, a register of private and zoological squirrel holdings was established. The findings show a broad variety of kept species and their frequency distribution. By contacting the different stakeholders via Web‐based social groups and societies, information passed in both directions so that disease awareness could be raised and participants could be recruited for further studies. Cross‐sectional studies revealed a prevalence of VSBV‐1‐positive subpopulations of 0% (95% CI 0%–6.2%) among private squirrel collections and 1.9% (95% CI: 0%–9.9%) among zoos in Germany. The approach presented here can be transferred to other populations of non‐traditional pets, which may be equally difficult to monitor, in the case of an emerging zoonotic infectious disease.
Strain Anisotropies and Self‐Limiting Capacities in Single‐Crystalline 3D Silicon Microstructures: Models for High Energy Density Lithium‐Ion Battery Anodes

This study examines the crystallographic anisotropy of strain evolution in model, single‐crystalline silicon anode microstructures on electrochemical intercalation of lithium atoms. The 3D hierarchically patterned single‐ crystalline silicon microstructures used as model anodes were prepared using combined methods of photolithography and anisotropic dry and wet chemical etching. Silicon anodes, which possesses theoretically ten times the energy density by weight compared to conventional carbon anodes, reveal highly anisotropic but more importantly, variably recoverable crystallographic strains during cycling. Model strain‐limiting silicon anode architectures that mitigate these impacts are highlighted. By selecting a specific design for the silicon anode microstructure, and exploiting the crystallographic anisotropy of strain evolution upon lithium intercalation to control the direction of volumetric expansion, the volume available for expansion and thus the charging capacity of these structures can be broadly varied. We highlight exemplary design rules for this self‐strain‐limited charging in which an anode can be variably optimized between capacity and stability. Strain‐limited capacities ranging from 677 mAhg−1 to 2833 mAhg−1 were achieved by constraining the area available for volumetric expansion via the design rules of the microstructures.
Metabolomics Insights in Early Childhood Caries

Dental caries is characterized by a dysbiotic shift at the biofilm–tooth surface interface, yet comprehensive biochemical characterizations of the biofilm are scant. We used metabolomics to identify biochemical features of the supragingival biofilm associated with early childhood caries (ECC) prevalence and severity. The study’s analytical sample comprised 289 children ages 3 to 5 (51% with ECC) who attended public preschools in North Carolina and were enrolled in a community-based cross-sectional study of early childhood oral health. Clinical examinations were conducted by calibrated examiners in community locations using International Caries Detection and Classification System (ICDAS) criteria. Supragingival plaque collected from the facial/buccal surfaces of all primary teeth in the upper-left quadrant was analyzed using ultra-performance liquid chromatography–tandem mass spectrometry. Associations between individual metabolites and 18 clinical traits (based on different ECC definitions and sets of tooth surfaces) were quantified using Brownian distance correlations (dCor) and linear regression modeling of log2-transformed values, applying a false discovery rate multiple testing correction. A tree-based pipeline optimization tool (TPOT)–machine learning process was used to identify the best-fitting ECC classification metabolite model. There were 503 named metabolites identified, including microbial, host, and exogenous biochemicals. Most significant ECC-metabolite associations were positive (i.e., upregulations/enrichments). The localized ECC case definition (ICDAS ≥1 caries experience within the surfaces from which plaque was collected) had the strongest correlation with the metabolome (dCor P = 8 × 10−3). Sixteen metabolites were significantly associated with ECC after multiple testing correction, including fucose (P = 3.0 × 10−6) and N-acetylneuraminate (p = 6.8 × 10−6) with higher ECC prevalence, as well as catechin (P = 4.7 × 10−6) and epicatechin (P = 2.9 × 10−6) with lower. Catechin, epicatechin, imidazole propionate, fucose, 9,10-DiHOME, and N-acetylneuraminate were among the top 15 metabolites in terms of ECC classification importance in the automated TPOT model. These supragingival biofilm metabolite findings provide novel insights in ECC biology and can serve as the basis for the development of measures of disease activity or risk assessment.
Thermokarst lakes of Western Siberia: a complex biogeochemical multidisciplinary approach

Western Siberia’s thermokarst lakes are highly dynamic hydrochemical systems that receive chemical elements from the surrounding peat soil and exchange greenhouse gases with the atmosphere, delivering dissolved carbon and metals to adjacent hydrological systems. Climate warming is likely to intensify the magnitude of these processes, thus seriously affecting the biogeochemical fluxes both on land and in the coastal zone of the Arctic Ocean. In this work, we review biogeochemical and morphological features of thermokarst water bodies comprising frozen palsa depressions up to large, kilometre-size lakes and drained lakes. Based on a compilation of more than a hundred analyses of these water bodies, we discuss the average concentration of organic carbon, as well as the major and trace elements, and predict the development of their chemical composition, CO2 and CH4 exchange with the atmosphere and effect on the riverine fluxes from the land to the ocean under the climate-warming scenario. The accelerating permafrost thaw and rising water temperatures in this region will probably shorten the life cycle of the thermokarst thaw water bodies, increase the fluxes of both CO2 and CH4 into the atmosphere, increase the concentration and delivery of dissolved organic carbon and related trace metals to the hydrological network and increase the potential bioavailability of micronutrients. Thus, the impact of permafrost thaw in Western Siberia on the global plantery processes, via the retroactive link between climate change and the thermokarst lakes’ geochemical activity, may be more significant than is currently expected.
Synthesis, Characterization, and Molecular Dynamics Simulation Of Na2O−CaO−SiO2−ZnO Glasses

The glass of composition Na2O·CaO·2SiO2 was modified upon addition of ZnO to obtain the series of glasses Na2O·CaO·2SiO2·xZnO (x = 0.17, 0.34, 0.68), where x = 0.68 is the experimentally determined maximum zinc content that does not produce phase separation. The glasses were investigated by means of density and thermal measurements (glass-transition and crystallization temperatures); moreover, the phases separated upon crystallization were identified. The results of molecular dynamics (MD) simulations combined with the analysis of the crystal structure of the main phases separated (Na2Ca(SiO3)2 and Na2ZnSiO4) provided insights into the structural role of zinc and its effect on the short- and medium-range order of the glass structures.
Leaching of nitrate and phosphorus after autumn and spring application of separated solid animal manures to winter wheat

Animal slurry can be separated into solid and liquid manure fractions to facilitate the transport of nutrients from livestock farms. In Denmark, untreated slurry is normally applied in spring whereas the solid fraction may be applied in autumn, causing increased risk of nitrate and phosphorus (P) leaching. We studied the leaching of nitrate and P in lysimeters with winter wheat crops (Triticum aestivum L.) after autumn incorporation versus spring surface application of solid manure fractions, and we compared also spring applications of mineral N fertilizer and pig slurry. Leaching was compared on a loamy sand and a sandy loam soil. The leaching experiment lasted for 2 yr, and the whole experiment was replicated twice. Nitrate leaching was generally low (19–34 kg N/ha) after spring applications of mineral fertilizer and manures. Nitrate leaching increased significantly after autumn application of the solid manures, and the extra nitrate leached was equivalent to 23–35% of total manure N and corresponded to the ammonium content of the manures. After spring application of solid manures and pig slurry, only a slight rise in N leaching was observed during the following autumn/winter (<5% of total manure N). Total P leaching was 40–165 g P/ha/yr, and the application of solid manure in autumn did not increase P leaching. The nitrogen fertilizer replacement value of solid manure N was similar after autumn and spring application (17–32% of total N). We conclude that from an environmental perspective, solid manure fractions should not be applied to winter wheat on sandy and sandy loam soils under humid North European conditions.
Composition, thermal and tensile properties of polyurethane-urea-silica hybrids

Polyurethane-Urea-Silica (PUUS) hybrid solutions were synthesized by a two-stage process, based on the use of polyoxypropylene glycol (PPG), 4,4′-dicyclohexyl methane diisocyanate (H12MDI), 1,4-butane diol, 3-aminopropyl-trimethoxysilane (APrTMOS) and a suitable amount of solvent. Following knife-coating and curing reaction, polyurethane/urea/silica hybrid films were prepared with different crosslinkages and silica contents through the in situ sol–gel process. The intermolecular bonding of hydrogen bonding between N–H, CO groups of PU and area and Si–O–Si crosslinked structure of APrTMOS was determined via FTIR analysis, and was correlated with thermal/tensile properties. FTIR and ESCA results indicate that the carbonyl, N–H and Si–O groups distribution contained in PU and hybrid films characterized as CO group absorption peak area ratio, N/C and Si/C atomic ratio were changed from the film's surface to the bulk with APrTMOS content. Intermolecular bonding, composition, thermal property and tensile strength of films were functions of the APrTMOS contents and PPG's molecular weight. All hybrid films exhibit a more significant change in glass transition temperature (Tg), decomposition temperatures (Td), coefficients of thermal expansion (CTEs) and stress-strain properties than that with pure PUs. The correlation between intermolecular bonding, composition, thermal and tensile properties were investigated.
ANTIBODY PREVALENCE TO AFRICAN SWINE FEVER VIRUS, MYCOBACTERIUM BOVIS, FOOT-AND-MOUTH DISEASE VIRUS, RIFT VALLEY FEVER VIRUS, INFLUENZA A VIRUS, AND BRUCELLA AND LEPTOSPIRA SPP. IN FREE-RANGING WARTHOG (PHACOCHOERUS AFRICANUS) POPULATIONS IN SOUTH AFRICA

Abstract: The warthog (Phacochoerus africanus) can be used as a model for investigating disease transmission at the human, wildlife, and livestock interface. An omnivore and scavenger, a warthog moves freely between natural ecotypes, farmland, and human communities and is susceptible to diseases of zoonotic, agricultural, and conservation concern. A retrospective study using 100 individual serum samples collected from May 1999 to August 2016 was performed to determine antibody prevalence to seven pathogens in warthogs from five locations in northeastern South Africa. Higher prevalence of antibodies to African swine fever virus and Mycobacterium bovis were detected in warthogs from the Greater Kruger National Park ecosystem in comparison to lower prevalence of antibodies to M. bovis and no antibodies to African swine fever virus in warthogs from uMhkuze Game Reserve. Low prevalence of antibodies to foot-and-mouth disease virus, Rift Valley fever virus, and influenza A virus was detected in all locations, and no antibodies against Brucella and Leptospira spp. were detected. No statistically significant difference in antibody prevalence was found between sexes for any disease. At the univariate analysis, M. bovis seropositivity was significantly different among age categories, with 49% (35/71) of adults found positive versus 29% (4/14) of juveniles and 9% (1/11) of sub-adults (Fisher's exact test, P=0.020), and between the sampling locations (Fisher's exact test, P=0.001). The multivariate model results indicated that juvenile warthogs had lower odds of testing positive to M. bovis antibodies than adults (juveniles' odds ratio [OR]=0.17, 95% confidence interval [CI]: 0.02–1.0), although this result was not statistically significant at the 5% level (P=0.052). For warthogs sampled at Satara Buffalo Camp, the odds (OR=0.22, 95% CI: 0.035–0.96) of being M. bovis antibody positive were significantly lower (P=0.043) than for warthogs sampled at Skukuza. Of particular interest in this study was the detection of warthogs seropositive for influenza A virus.
Carbon-coated hierarchically porous silicon as anode material for lithium ion batteries

Silicon is one of the most promising anode materials for high energy density lithium ion batteries. However, its fast capacity decay due to volume expansion and the resultant particle pulverization hinders its commercial application. Diverse strategies have been proposed to reduce these effects. In this article, hierarchically porous silicon composite is formed by coating the porous silicon particles obtained by magnesiothermically reducing commercial diatomite. Both the void space between the silicon particles and the pores within each silicon particle are designed to accommodate the volume change of silicon in the charge and discharge processes. On the other hand, the carbon coating layer alleviates the volume change of silicon and maintain the electric contact between the particles. The carbon-coated hierarchically porous silicon composite based on this design concept shows much better cyclability than that of the bare porous silicon.
Introduction to the Special Issue on Accounting Academia in Central and Eastern Europe

Several calls have been made to investigate the processes of change characterizing academia worldwide. In particular, the tension apparent between the ‘universal’ models (standards, rankings) on the one hand, and the cultural and social features of academia in specific countries on the other hand, was deemed very fruitful to be researched. Most Central and Eastern European (CEE) countries share a communist past and have transitioned toward a market economy, more or less rapidly or successfully. Their academic environment is characterized by common traits, but where apparent, improvements have mostly emerged through sustained individual efforts, rather than through coherent and systematic thinking of education officials. However, many challenges faced by accounting academics affiliated with institutions in CEE countries are similar, and the experience of others may prove very significant. Therefore, we want to give a more coherent perspective on the processes of change and of the evolutions happening at the regional level. The topics proposed for investigation include: the academic environment and the consequences on accounting research; the construction of the accounting academic’s identity, and the relationship between accounting education, research, and practice; and accounting education. The aim of this introduction to the special issue is to give an overview of these topics in accounting academia in CEE countries, by mobilizing our own understanding and experience, and the international literature.
Use of a Portable Analyzer for Venous Blood Gas and Biochemistry Analysis in Free-Ranging Indian Flying Foxes (Pteropus giganteus) in Myanmar

Abstract: We determined venous blood gas, acid-base, and biochemical parameters for thirteen free-ranging Indian flying foxes (Pteropus giganteus) in Myanmar, using a handheld i-STAT analyzer with CG8+ and CHEM8 cartridges. For field-based projects, portable blood analyzers enable identification and management of electrolyte and acid-base imbalances and collection of physiologic data, but present logistical challenges.