Miracle-dz/UniFAR-FTUs huggingface dataset:
Attentional Flexibility Predicts A-Not-B Task Performance in 14-Month-Old-Infants: A Head-Mounted Eye Tracking Study

Early individual differences in executive functions (EFs) are predictive of a range of developmental outcomes. However, despite the importance of EFs, little is known about the processes underlying these early individual differences. Therefore, we investigated the association between 14-month-old infants’ attention on a reaching version of the A-not-B task and task success. We hypothesized that both strategic focused attention (measured as percentage looking time towards the correct location during delay) and attentional flexibility (measured as number of looks per second to available stimuli during delay) would relate positively to task performance. Infants performed the A-not-B task wearing a head-mounted eye tracker (N = 24). Results were trial-dependent and partially supported the hypotheses: (1) infants who were better able to flexibly shift attention between available stimuli on the first pre-switch trial showed better task performance overall; and (2) strategic focused attention to the hiding location during the first switch trial was positively related to performance on that particular trial only (trend-level effect). Thus, the study shows preliminary evidence that particularly attentional flexibility is a key factor underlying EF performance in young children. Advantages and challenges of working with head-mounted eye tracking in infants are discussed.
Oncogenic effects of RAB27B through exosome independent function in renal cell carcinoma including sunitinib-resistant

Exosomes are 40–100 nm nano-sized extracellular vesicles. They are released from many cell types and move into the extracellular space, thereby transferring their components to recipient cells. Exosomes are receiving increasing attention as novel structures participating in intracellular communication. RAB27B is one of the leading proteins involved in exosome secretion, and oncogenic effects have been reported in several cancers. In recent years, molecularly targeted agents typified by sunitinib are widely used for the treatment of metastatic or recurrent renal cell carcinoma (RCC). However, intrinsic or acquired resistance to sunitinib has become a major issue. The present study aimed to elucidate the role of RAB27B in RCC including sunitinib-resistant and its role in exosomes. Bioinformatic analyses revealed that high expression of RAB27B correlates with progression of RCC. The expression of RAB27B protein in RCC cell lines was significantly enhanced compared with that in normal kidney cell lines. Furthermore, RAB27B protein expression was enhanced in all of the tested sunitinib-resistant RCC cell lines compared to parental cells. Although no specific effect of RAB27B on exosomes was identified in RCC cells, loss-of-function studies demonstrated that knockdown of RAB27B suppressed cell proliferation, migration and invasive activities. Moreover, anti-tumor effects of RAB27B downregulation were also observed in sunitinib-resistant RCC cells. RNA sequence and pathway analysis suggested that the oncogenic effects of RAB27B might be associated with MAPK and VEGF signaling pathways. These results showed that RAB27B is a prognostic marker and a novel therapeutic target in sunitinib-sensitive and -resistant RCCs. Further analyses should improve our understanding of sunitinib resistance in RCC.
Cardiac Mechano-Electric Coupling: Acute Effects of Mechanical Stimulation on Heart Rate and Rhythm.

The heart is vital for biological function in almost all chordates, including human. It beats continually throughout our life, supplying the body with oxygen and nutrients while removing waste products. If it stops - so does life. The heartbeat involves precise coordination of the activity of billions of individual cells, as well as their swift and well-coordinated adaption to changes in physiological demand. Much of the vital control of cardiac function occurs at the level of individual cardiac muscle cells, including acute beat-by-beat feedback from the local mechanical environment to electrical activity (as opposed to longer-term changes in gene expression, and functional or structural remodelling). This process is known as Mechano-Electric Coupling (MEC). In the current review, we: present evidence for, and implications of, MEC in health and disease in human; summarise our understanding of MEC effects gained from whole animal, organ, tissue, and cell studies; identify potential molecular mediators of MEC responses; and demonstrate the power of computational modelling in developing a more comprehensive understanding of 'what makes the heart tick'.
Geriatric assessment in older patients with a hematologic malignancy: a systematic review

The aim of this systematic review is to give an update of all currently available evidence on the relevance of a geriatric assessment in the treatment of older patients with hematologic malignancies. A systematic search in MEDLINE and EMBASE was performed to find studies in which a geriatric assessment was used to detect impaired geriatric domains or to address the association between geriatric assessment and survival or clinical outcome measures. The literature search included 4,629 reports, of which 54 publications from 44 studies were included. Seventy-three percent of the studies were published in the last 5 years. The median age of the patients was 73 years (range, 58-86) and 71% had a good World Health Organization (WHO) performance status. The median prevalence of geriatric impairments varied between 17% and 68%, even in patients with a good WHO performance status. Polypharmacy, nutritional status and instrumental activities of daily living were most frequently impaired. Whereas several geriatric impairments and frailty (based on a frailty screening tool or summarized geriatric assessment score) were predictive for a shorter overall survival, WHO performance status lost its predictive value in most studies. The association between geriatric impairments and treatment-related toxicity varied, with a trend towards a higher risk of (non-)hematologic toxicity in frail patients. During the follow-up, frailty seemed to be associated with treatment non-completion, especially when patients were malnourished. Patients with a good physical capacity had a shorter stay in hospital and a lower rate of hospitalization. Geriatric assessment, even in patients with a good performance status, can detect impaired geriatric domains and these impairments may be predictive of mortality. Moreover, geriatric impairments suggest a higher risk of treatment-related toxicity, treatment non-completion and use of healthcare services. A geriatric assessment should be considered before starting treatment in older patients with hematologic malignancies.
LACK OF ADVERSE INFLUENCE OF BLACK PEPPER, ITS OLEORESIN AND PIPERINE IN THE WEANLING RAT

Black pepper, its oleoresin or its active principle piperine fed to ruts at doses 5 to 20 times normal human intake did not cause any adverse effect on: ( I ) growth, food eficiency ratio and organ weights; (2) RBC, WBC and differential counts; (3) the levels of blood constituents like hemoglobin, total serum proteins, albumin, globulin, sugar and cholesterol; (4) the levels of serum aminotransferases and phosphatases and (5) fat and nitrogen balance.
Diversity in CRISPR-based immunity protects susceptible genotypes by restricting phage spread and evolution.

Diversity in host resistance often associates with reduced pathogen spread. This may result from ecological and evolutionary processes, likely with feedback between them. Theory and experiments on bacteria-phage interactions have shown that genetic diversity of the bacterial adaptive immune system can limit phage evolution to overcome resistance. Using the CRISPR-Cas bacterial immune system and lytic phage, we engineered a host-pathogen system where each bacterial host genotype could be infected by only one phage genotype. With this model system, we explored how CRISPR diversity impacts the spread of phage when they can overcome a resistance allele, how immune diversity affects the evolution of the phage to increase its host range, and if there was feedback between these processes. We show that increasing CRISPR diversity benefits susceptible bacteria via a dilution effect, which limits the spread of the phage. We suggest that this ecological effect impacts the evolution of novel phage genotypes, which then feeds back into phage population dynamics.
Nutritional Limitation Travels up the Food Chain

It is a well accepted fact that nutrient limitation of plants affects the growth and survival of herbivores, generally leading to lower performance of herbivores feeding on nutrient stressed plants. The effect of plants' growing conditions on predatory organisms, feeding one trophic level up, has been much less studied, and there is a general consensus that such effects would be small as herbivores often show relatively strong homeostasis with respect to their nutrient content. Here, we challenge this view, and show from several examples that despite the fact that herbivores buffer much of the variance in nutrient stoichiometry of their food, effects of growing conditions of the primary producers can travel up the food chain. We discuss the implications of these findings, and argue that phosphorus limitation of secondary consumers might be more common in marine than in freshwater systems.
Effect of Silver Nanoparticles on Biofilm Formation and EPS Production of Multidrug-Resistant Klebsiella pneumoniae

Antibiotic resistance against present antibiotics is rising at an alarming rate with need for discovery of advanced methods to treat infections caused by resistant pathogens. Silver nanoparticles are known to exhibit satisfactory antibacterial and antibiofilm activity against different pathogens. In the present study, the AgNPs were synthesized chemically and characterized by UV-Visible spectroscopy, scanning electron microscopy, and X-ray diffraction. Antibacterial activity against MDR K. pneumoniae strains was evaluated by agar diffusion and broth microdilution assay. Cellular protein leakage was determined by the Bradford assay. The effect of AgNPs on production on extracellular polymeric substances was evaluated. Biofilm formation was assessed by tube method qualitatively and quantitatively by the microtiter plate assay. The cytotoxic potential of AgNPs on HeLa cell lines was also determined. AgNPs exhibited an MIC of 62.5 and 125 μg/ml, while their MBC is 250 and 500 μg/ml. The production of extracellular polymeric substance decreased after AgNP treatment while cellular protein leakage increased due to higher rates of cellular membrane disruption by AgNPs. The percentage biofilm inhibition was evaluated to be 64% for K. pneumoniae strain MF953600 and 86% for MF953599 at AgNP concentration of 100 μg/ml. AgNPs were evaluated to be minimally cytotoxic and safe at concentrations of 15-120 μg/ml. The data evaluated by this study provided evidence of AgNPs being safe antibacterial and antibiofilm compounds against MDR K. pneumoniae.
MORPHOLOGY OF THE CURD OF CAULIFLOWER

SADIK, SIDKI. (U. California, Davis.) Morphology of the curd of cauliflower. Amer. Jour. Bot. 49(3): 290-297. Illus. 1962. -The development of the curd and inflorescence of cauliflower, Brassica oleracea Linn. , var. botrytis D.C., is described. The cultivars 'Snowball M' and 'February-Early-March' were studied. The curd has a nonfasciated and monopodial type of branching. Curd initiation of 'Snowball M' is not dependent on vernalization, but the curd of 'FebruaryEarly-March' and the floral primordia of both cultivars are initiated only after vernalization. Associated with flowering is the disruption of the curd by the elongation of some of the inflorescence branches. The initiation of leaves, branches, and floral primordia follows a 5 + 8 phyllotaxy throughout all stages of development. This system of phyllotaxy changes at the time of initiation
Genome-Wide Open Chromatin Methylome Profiles in Colorectal Cancer

The methylome of open chromatins was investigated in colorectal cancer (CRC) to explore cancer-specific methylation and potential biomarkers. Epigenome-wide methylome of open chromatins was studied in colorectal cancer tissues using the Infinium DNA MethylationEPIC assay. Differentially methylated regions were identified using the ChAMP Bioconductor. Our stringent analysis led to the discovery of 2187 significant differentially methylated open chromatins in CRCs. More hypomethylated probes were observed and the trend was similar across all chromosomes. The majority of hyper- and hypomethylated probes in open chromatin were in chromosome 1. Our unsupervised hierarchical clustering analysis showed that 40 significant differentially methylated open chromatins were able to segregate CRC from normal colonic tissues. Receiver operating characteristic analyses from the top 40 probes revealed several significant, highly discriminative, specific and sensitive probes such as OPLAH cg26256223, EYA4 cg01328892, and CCNA1 cg11513637, among others. OPLAH cg26256223 hypermethylation is associated with reduced gene expression in the CRC. This study reports many open chromatin loci with novel differential methylation statuses, some of which with the potential as candidate markers for diagnostic purposes.
Reflection on modern methods: generalized linear models for prognosis and intervention—theory, practice and implications for machine learning

Abstract Prediction and causal explanation are fundamentally distinct tasks of data analysis. In health applications, this difference can be understood in terms of the difference between prognosis (prediction) and prevention/treatment (causal explanation). Nevertheless, these two concepts are often conflated in practice. We use the framework of generalized linear models (GLMs) to illustrate that predictive and causal queries require distinct processes for their application and subsequent interpretation of results. In particular, we identify five primary ways in which GLMs for prediction differ from GLMs for causal inference: (i) the covariates that should be considered for inclusion in (and possibly exclusion from) the model; (ii) how a suitable set of covariates to include in the model is determined; (iii) which covariates are ultimately selected and what functional form (i.e. parameterization) they take; (iv) how the model is evaluated; and (v) how the model is interpreted. We outline some of the potential consequences of failing to acknowledge and respect these differences, and additionally consider the implications for machine learning (ML) methods. We then conclude with three recommendations that we hope will help ensure that both prediction and causal modelling are used appropriately and to greatest effect in health research.
Meristic variation, asymmetry, and aspects of the habitat of Culaea inconstans (Kirtland), the brook stickleback, in Manitoba

Phenetic traits were compared in 45 Culaea inconstans populations in southern Manitoba. Small body size characterized individuals of populations exposed to potentially predatory fishes. Skewing of the gill-raker distributions was greatest among populations sympatric with Umbra limi, a potential food competitor and predator. These patterns of variation are in some aspects similar to and in others contrast with those found in another stickleback, Gasterosteus aculeatus. Less fluctuating asymmetry occurred in the pectoral fin rays of stream-dwelling populations than in those of lakes. Care will be required in using fluctuating asymmetry as an indicator of environmental stress.
Cortical afferents of the perirhinal, postrhinal, and entorhinal cortices of the rat

We have divided the cortical regions surrounding the rat hippocampus into three cytoarchitectonically discrete cortical regions, the perirhinal, the postrhinal, and the entorhinal cortices. These regions appear to be homologous to the monkey perirhinal, parahippocampal, and entorhinal cortices, respectively. The origin of cortical afferents to these regions is well‐documented in the monkey but less is known about them in the rat. The present study investigated the origins of cortical input to the rat perirhinal (areas 35 and 36) and postrhinal cortices and the lateral and medial subdivisions of the entorhinal cortex (LEA and MEA) by placing injections of retrograde tracers at several locations within each region. For each experiment, the total numbers of retrogradely labeled cells (and cell densities) were estimated for 34 cortical regions. We found that the complement of cortical inputs differs for each of the five regions. Area 35 receives its heaviest input from entorhinal, piriform, and insular areas. Area 36 receives its heaviest projections from other temporal cortical regions such as ventral temporal association cortex. Area 36 also receives substantial input from insular and entorhinal areas. Whereas area 36 receives similar magnitudes of input from cortices subserving all sensory modalities, the heaviest projections to the postrhinal cortex originate in visual associational cortex and visuospatial areas such as the posterior parietal cortex. The cortical projections to the LEA are heavier than to the MEA and differ in origin. The LEA is primarily innervated by the perirhinal, insular, piriform, and postrhinal cortices. The MEA is primarily innervated by the piriform and postrhinal cortices, but also receives minor projections from retrosplenial, posterior parietal, and visual association areas. J. Comp. Neurol. 398:179–205, 1998. © 1998 Wiley‐Liss, Inc.
Physiologically‐Based Pharmacokinetic Model‐Informed Drug Development for Fenebrutinib: Understanding Complex Drug‐Drug Interactions

Fenebrutinib is a CYP3A substrate and time‐dependent inhibitor, as well as a BCRP and OATP1B transporter inhibitor in vitro. Physiologically‐based pharmacokinetic (PBPK) modeling strategies with the ultimate goal of understanding complex drug‐drug interactions (DDIs) and proposing doses for untested scenarios were developed. The consistency in the results of two independent approaches, PBPK simulation and endogenous biomarker measurement, supported that the observed transporter DDI is primarily due to fenebrutinib inhibition of intestinal BCRP, rather than hepatic OATP1B. A mechanistic‐absorption model accounting for the effects of excipient complexation with fenebrutinib was used to rationalize the unexpected observation of itraconazole‐fenebrutinib DDI (maximum plasma concentration (Cmax) decreased, and area under the curve (AUC) increased). The totality of the evidence from sensitivity analysis and clinical and nonclinical data suggested that fenebrutinib is likely a sensitive CYP3A substrate. This advanced PBPK application allowed the use of model‐informed approach to facilitate the development of concomitant medication recommendations for fenebrutinib without requiring additional clinical DDI studies.
Genetic Analysis of Conception Rate in French Holstein Cattle

Abstract Genetic parameters for conception rate in Holstein cattle were estimated from insemination data collected in western France in 1987–88. Data included 513020 inseminations of 250215 lactating cows. Sire, service bull, herd and cow variance components were estimated with the “tilde-hat” method. Both linear and threshold models were used and provided very similar results for the fixed effects. Conception rate was lowest in latest parities, before 60 days postpartum, in winter and on Mondays. With the linear model, the estimated heritability and repeatability of conception rate were 2 and 3.2%, respectively, and the service bull and herd components contributed 0.8 and 1.1% of the total variance, respectively. All variance components were 60% greater from the threshold model. The correlation between male and female fertility was small and slightly negative (−0.11). In spite of a low heritability, the genetic variability of female fertility was large, with a genetic coefficient of variation of 14%. The.
Effect of Pratylenchus zeae infection on the expression of isozyme activities in resistant and susceptible sugarcane clones

The constitutive levels of both phenylalanine ammonia-lyase (PAL) and tyrosine ammonia-lyase (TAL) activities in roots and leaves were found to be greater in sugarcane clones resistant to the lesion nematode Pratylenchus zeae than in susceptible clones. Investigations on the sequential development of PAL and TAL activities were undertaken in resistant (Co 7717) and susceptible (CoC 671) sugarcane clones infected with P. zeae. PAL activity in both roots and leaves of the resistant clone showed a maximum percentage increase, compared with non-infected controls, at 35 and 14 days after infection (DAI), respectively. However, in the susceptible clone the maximum percentage decrease compared with the non-infected clone was observed at 3 and 14 DAI. TAL activity in the resistant clone showed the maximum percentage increase compared with the non-infected control at 28 DAI in roots and 7 DAI in leaves, whereas in the susceptible clone the maximum percentage decrease compared with the non-infected control was at 35 DAI in roots and 28 DAI in leaves. In experiments on the induction of enzyme response to infection by P. zeae, eight resistant and eight susceptible clones were analysed 14 days after P. zeae infection. Among the eight resistant clones six showed increased PAL activity compared with non-infected clones. Four susceptible infected clones showed a decrease as compared with non-infected clones, while the remaining four infected clones showed an increased enzyme activity compared to non-infected clones. Superoxide dismutase (SOD) activity increased quantitatively in both roots and leaves from nematode-infected susceptible clones compared to non-infected clones. The SOD activity decreased in roots and leaves from nematode infected resistant clones, when compared to the non-infected-resistant clones. In native PAGE analysis of SOD and esterase activities the major differences between infected and non-infected clones of resistant and susceptible sugarcane were observed in low and medium electrophoretic mobility ranges.
Impact of docusate and fauna‐free on feed intake, ruminal flora and digestive enzyme activities of sheep

Abstract Four Small‐tail Han male hogget sheep, fitted with rumen cannula and fed the same basal diet were used to study the impacts of docusate (DOC) and fauna‐free on the voluntary feed intake (VFI), and ruminal protozoal, bacterial and fungal counts and the digestive enzyme activities. By a 4 × 4 Latin square design, sheep were given no DOC (the control), 2 doses of DOC: 1.2 and 3.0 g/kg diet or oral dose of 6.0 g/d DOC for three days (fauna‐free treatment) in each period of 18 days, the last three days of which were for sampling the rumen fluid. Compared with the control, 1.2 g/kg of DOC supplementation significantly resulted in increases of 18.0% VFI and 44% bacterial count, and no significant change in the fungal number. Supplementing DOC reduced protozoal number in a dose‐dependent manner. The fibre degradation enzyme activity in rumen fluid increased by 17.7% with a concomitant 10% increase in volatile fatty acids (VFA); the protease activity was reduced by 23% with a corresponding reduction in rumen ammonia by 42%. In contrast, supplementing 3.0 g/kg of DOC has adverse effects on those measures compared with 1.2 g/kg of DOC. Defaunation was accompanied with substantial increases in the bacterial and fungal counts, but had no significant influences on VFI and the enzyme activity for starch, protein and pectin digestion, and small changes in fibre digestion enzymes and the total VFA compared with the control. A high correlation (r 2 = 0.82) was noted between VFI and the total activity of fibre digestion enzymes and VFA. It was proposed that fibre digestion rate in the rumen is a primary factor for determining VFI in sheep, and dietary supplementation of 1.2 g/kg of DOC could partially result in enhanced activity of fibre digestive enzyme in the rumen and increase VFI.