Miracle-dz/UniFAR-FTUs huggingface dataset:
All-optical signal processing using /spl chi//sup (2)/ nonlinearities in guided-wave devices

The authors present a review of all-optical signal-processing technologies based on /spl chi//sup (2)/ nonlinear interactions in guided-wave devices and their applications for telecommunication. In this study, the main focus is on three-wave interactions in annealed proton-exchanged periodically poled lithium niobate waveguides due to their suitable properties with respect to nonlinear mixing efficiency, propagation loss, and ease of fabrication. These devices allow the implementation of advanced all-optical signal-processing functions for next-generation networks with signal bandwidths beyond 1 THz. In this paper, integrated structures that will allow for improvements of current signal-processing functions as well as the implementation of novel device concepts are also presented.
Evaluating the Pairwise String Alignment of Pronunciations

Pairwise string alignment (PSA) is an important general technique for obtaining a measure of similarity between two strings, used e.g., in dialectology, historical linguistics, transliteration, and in evaluating name distinctiveness. The current study focuses on evaluating different PSA methods at the alignment level instead of via the distances it induces. About 3.5 million pairwise alignments of Bulgarian phonetic dialect data are used to compare four algorithms with a manually corrected gold standard. The algorithms evaluated include three variants of the Levenshtein algorithm as well as the Pair Hidden Markov Model. Our results show that while all algorithms perform very well and align around 95% of all alignments correctly, there are specific qualitative differences in the (mis)alignments of the different algorithms.
Design optimization for the adoption of bonded magnets in PM BLDC motors

The increment of the manageable power in machines where the normally adopted ferrites are replaced with bonded magnets can vary and can introduce saturation problems depending on the variations in the magnetic circuit design. The saturation of the magnetic circuit distorts the phase voltages, introducing undesired harmonics in the connection to the mains. Combined modifications of both stator poles and rotor ring of a Brushless DC motor are proposed to evaluate their impact on the increment of the manageable power and on the harmonic content. Several magnetic circuit modifications have been considered and the paper presents the results of the most reasonable solutions, obtaining significant increments of the power. The activity is still carrying on and will take into account also the magnetization directions.
The effect of 10 days of intermittent fasting on Wingate anaerobic power and prolonged high-intensity time-to-exhaustion cycling performance

Abstract Many physically active individuals have undertaken intermittent fasting to reduce their daily caloric intake. However, abstaining from meals for a specific length of time may lead to the acute disturbance of highly carbohydrate-dependent exercise performance. The purpose of this study was to observe the effect of 10 days of intermittent fasting on high-intensity type exercises, Wingate anaerobic (WT) and prolonged high-intensity time-to-exhaustion (HIT) cycling test. Twenty participants were randomised into an intermittent fasting (FAS) and a control group (CON). One day after baseline data collection on Day-0 where participants consumed their recommended daily caloric intake (FAS = 2500 ± 143 kcal day−1; CON = 2492 ± 20 kcal day−1) served over a course of five meals, the FAS group consumed only four meals where 40% was restricted by the omission of lunch (FAS = 1500 ± 55 kcal day−1). This diet was then continued for 10 days. Data on exercise performance and other dependent variables were collected on Day-2, -4, -6, -8 and -10. A reduction in WT power in the FAS group was observed on Day-2 (821.74 ± 66.07 W) compared to Day-0 (847.63 ± 95.94 W) with a moderate effect size (p < .05, ES = 0.4), while HIT time-to-exhaustion performance declined over the 10 days with a trend of recovery from a large to a minimum effect size (p < .05, ES = 0.8–0.3). Body weight and triglyceride were consistently reduced in the FAS group (p < .01). The present study suggests that intermittent fasting must exceed 10 days to ensure that high-intensity performance does not deteriorate because this length of time seems to be required for effective adaptation to the new dietary regimen.
Computational Multitarget Drug Design

Designing drugs that can simultaneously interact with multiple targets is a promising approach for treating complicated diseases. Compared to using combinations of single target drugs, multitarget drugs have advantages of higher efficacy, improved safety profile, and simpler administration. Many in silico methods have been developed to approach different aspects of this polypharmacology-guided drug design, particularly for drug repurposing and multitarget drug design. In this review, we summarize recent progress in computational multitarget drug design and discuss their advantages and limitations. Perspectives for future drug development will also be discussed.
Luffa cylindrica as a lignocellulosic source of fiber, microfibrillated cellulose, and cellulose nanocrystals

In this work the annual plant called Luffa cylindrica (LC) has been characterized and used to prepare macroscopic lignocellulosic fibers and cellulosic nanoparticles, viz. microfibrillated cellulose (MFC) and whiskers, each of which can be used as a reinforcing phase in bionanocomposites. The morphological, chemical, and physical properties of LC fibers were first characterized. The contents of lignin, hemicellulose, and other constituents were determined, and scanning electron microscopy (SEM) observations were performed to investigate the surface morphology of the LC fibers. Sugars contents were determined by ionic chromatography, and it was shown that glucose was the main sugar present in the residue. MFC and whiskers were prepared after chemical treatments (NaOH and NaClO2), purifying cellulose by eliminating lignin and hemicellulose. Transmission electron microscopy (TEM) and SEM made it possible to determine the dimensions of LC whiskers and MFC. Tensile tests were carried out to investigate the mechanical properties of LF nanoparticles.
Distributed Control for Reaching Optimal Steady State in Network Systems: An Optimization Approach

In this paper, we consider the problem of distributed control for network systems aiming to achieve optimal steady-state performance. Motivated by recent research on reengineering cyber-physical systems, such as power systems and the Internet, we propose a two-step control retrofit procedure. First, we reformulate the dynamical system as an optimization algorithm to solve a certain optimization problem. Second, we combine a predefined steady-state optimization problem and the reformulated problem to systematically (re)design the control. As a result, the system automatically tracks the optimal solution of the predefined steady-state optimization problem and the control scheme can be implemented in a distributed and closed-loop manner. In order to investigate how general this framework is, we establish necessary and sufficient conditions under which a linear dynamical system can be viewed as an optimization algorithm. These conditions are characterized using properties of system matrices and related linear matrix inequalities. A practical example of frequency control in power systems shows the effectiveness of the proposed framework.
Idiomatic Expressions in VerbaLex

Idiomatic expressions are part of everyday language, therefore NLP applications that can ``understand'' idioms are desirable. The nature of idioms is somewhat heterogenous - idioms form classes differing in many aspects (e.g. syntactic structure, lexical and syntactic fixedness). Although dictionaries of idioms exist, they usually do not contain information about fixedness or frequency since they are intended to be used by humans, not computer programs. In this work, we propose how to deal with idioms in the valency lexicon VerbaLex using automatically extracted information from the largest dictionary Czech idioms and a web corpus.
Bayesian Approach for Parameter Estimation in the Structural Analysis and Prognosis

In this study, a Bayesian framework is outlined for the parameter estimation that arises during the uncertainty quantification in the numerical simulation as well as in the prognosis of the structural performance. In the framework, the parameters are estimated in the form of posterior distribution conditional on the provided data. Several case studies that implement the estimation are presented to illustrate the concept. First one is an inverse estimation, in which the unknown input parameters are inversely estimated based on a finite number of measured response data. Next one is a metamodel uncertainty problem that arises when the original response function is approximated by a metamodel using a finite set of response values. Third and fourth one are a prognostics problem, in which the unknown parameters of the degradation model are estimated based on the monitored data. During the numerical implementation, Markov Chain Monte Carlo (MCMC) method is employed, which is a modern computational technique for the efficient and straightforward estimation of parameters. Once the samples are obtained, one can proceed to the posterior predictive inference on the response at the unobserved points or at the future time in the form of confidence interval.
Influenza C and D Viruses Package Eight Organized Ribonucleoprotein Complexes

ABSTRACT Influenza A and B viruses have eight-segmented, single-stranded, negative-sense RNA genomes, whereas influenza C and D viruses have seven-segmented genomes. Each genomic RNA segment exists in the form of a ribonucleoprotein complex (RNP) in association with nucleoproteins and an RNA-dependent RNA polymerase in virions. Influenza D virus was recently isolated from swine and cattle, but its morphology is not fully studied. Here, we examined the morphological characteristics of D/bovine/Yamagata/10710/2016 (D/Yamagata) and C/Ann Arbor/50 (C/AA), focusing on RNPs packaged within the virions. By scanning transmission electron microscopic tomography, we found that more than 70% of D/Yamagata and C/AA virions packaged eight RNPs arranged in the “1+7” pattern as observed in influenza A and B viruses, even though type C and D virus genomes are segmented into only seven segments. These results imply that influenza viruses generally package eight RNPs arranged in the “1+7” pattern regardless of the number of RNA segments in their genome. IMPORTANCE The genomes of influenza A and B viruses are segmented into eight segments of negative-sense RNA, and those of influenza C and D viruses are segmented into seven segments. For progeny virions to be infectious, each virion needs to package all of their genomic segments. Several studies support the conclusion that influenza A and B viruses selectively package eight distinct genomic RNA segments; however, the packaging of influenza C and D viruses, which possess seven segmented genomes, is less understood. By using electron microscopy, we showed that influenza C and D viruses package eight RNA segments just as influenza A and B viruses do. These results suggest that influenza viruses prefer to package eight RNA segments within virions independent of the number of genome segments.
Sanitation and water supply coverage thresholds associated with active trachoma: Modeling cross-sectional data from 13 countries

Background Facial cleanliness and sanitation are postulated to reduce trachoma transmission, but there are no previous data on community-level herd protection thresholds. We characterize associations between active trachoma, access to improved sanitation facilities, and access to improved water sources for the purpose of face washing, with the aim of estimating community-level or herd protection thresholds. Methods and findings We used cluster-sampled Global Trachoma Mapping Project data on 884,850 children aged 1–9 years from 354,990 households in 13 countries. We employed multivariable mixed-effects modified Poisson regression models to assess the relationships between water and sanitation coverage and trachomatous inflammation—follicular (TF). We observed lower TF prevalence among those with household-level access to improved sanitation (prevalence ratio, PR = 0.87; 95%CI: 0.83–0.91), and household-level access to an improved washing water source in the residence/yard (PR = 0.81; 95%CI: 0.75–0.88). Controlling for household-level water and latrine access, we found evidence of community-level protection against TF for children living in communities with high sanitation coverage (PR80–90% = 0.87; 95%CI: 0.73–1.02; PR90–100% = 0.76; 95%CI: 0.67–0.85). Community sanitation coverage levels greater than 80% were associated with herd protection against TF (PR = 0.77; 95%CI: 0.62–0.97)—that is, lower TF in individuals whose households lacked individual sanitation but who lived in communities with high sanitation coverage. For community-level water coverage, there was no apparent threshold, although we observed lower TF among several of the higher deciles of community-level water coverage. Conclusions Our study provides insights into the community water and sanitation coverage levels that might be required to best control trachoma. Our results suggest access to adequate water and sanitation can be important components in working towards the 2020 target of eliminating trachoma as a public health problem.
First data on in vitro fertilization and blastocyst formation after intraovarian injection of calcium gluconate-activated autologous platelet rich plasma

Abstract Platelets modulate clinically relevant yet incompletely understood tissue regeneration processes, and platelet rich plasma (PRP) has been previously used with some success in various non-reproductive medical contexts. Here, we extended PRP application to ovarian tissue with a view to document impact on ovarian reserve among women attending for infertility treatment. PRP was freshly isolated from patients (n= 4) with diminished ovarian reserve as determined by at least one prior IVF cycle canceled for poor follicular recruitment response or estimated by serum AMH and/or FSH, no menses for ≥1 year. Immediately following substrate isolation and activation with calcium gluconate, approximately 5 mL of autologous PRP was injected into each ovary under direct transvaginal sonogram guidance. For each study subject, AMH, FSH, and serum estradiol data were recorded at two-week intervals post-PRP and compared to baseline (pre-PRP) values. In this pilot group, mean (±SD) patient age was 42 ± 4 years with infertility duration reported as 60 ± 25 months. Following this protocol of intraovarian PRP administration, increases in serum AMH (p = .17), decreases in FSH (p < .01), or both, were observed in all cases, sufficient to permit retrieval of 5.3 ± 1.3 MII oocytes. IVF occurred 78 ± 22 (range = 59–110) days after activated PRP injection, and results appeared independent of patient age, infertility duration, baseline platelet concentration or pretreatment antral follicle count. Each patient had at least one blastocyst suitable for cryopreservation. While autologous PRP has been successfully applied therapeutically to various tissues to accelerate healing and wound repair, this is the first description of direct injection of activated PRP into the human ovary of poor prognosis IVF patients. Evidence of improved ovarian function was noted in all who received intraovarian PRP, possibly as early as two months after treatment. Additional research is needed to clarify (and enhance) which PRP components are responsible for altered ovarian function, and to identify predictive characteristics for patients most likely to benefit from this intervention.
The stepwise development of the lamprey visual system and its evolutionary implications

Lampreys, which represent the oldest group of living vertebrates (cyclostomes), show unique eye development. The lamprey larva has only eyespot‐like immature eyes beneath a non‐transparent skin, whereas after metamorphosis, the adult has well‐developed image‐forming camera eyes. To establish a functional visual system, well‐organised visual centres as well as motor components (e.g. trunk muscles for locomotion) and interactions between them are needed. Here we review the available knowledge concerning the structure, function and development of the different parts of the lamprey visual system. The lamprey exhibits stepwise development of the visual system during its life cycle. In prolarvae and early larvae, the ‘primary’ retina does not have horizontal and amacrine cells, but does have photoreceptors, bipolar cells and ganglion cells. At this stage, the optic nerve projects mostly to the pretectum, where the dendrites of neurons in the nucleus of the medial longitudinal fasciculus (nMLF) appear to receive direct visual information and send motor outputs to the neck and trunk muscles. This simple neural circuit may generate negative phototaxis. Through the larval period, the lateral region of the retina grows again to form the ‘secondary’ retina and the topographic retinotectal projection of the optic nerve is formed, and at the same time, the extra‐ocular muscles progressively develop. During metamorphosis, horizontal and amacrine cells differentiate for the first time, and the optic tectum expands and becomes laminated. The adult lamprey then has a sophisticated visual system for image‐forming and visual decision‐making. In the adult lamprey, the thalamic pathway (retina–thalamus–cortex/pallium) also transmits visual stimuli. Because the primary, simple light‐detecting circuit in larval lamprey shares functional and developmental similarities with that of protochordates (amphioxus and tunicates), the visual development of the lamprey provides information regarding the evolutionary transition of the vertebrate visual system from the protochordate‐type to the vertebrate‐type.
Study of the relation between body weight and functional limitations and pain in patients with knee osteoarthritis

ABSTRACT Objective To assess the influence of the body weight in functional capacity and pain of adult and elderly individuals with knee osteoarthritis. Methods The sample consisted of 107 adult and elderly patients with knee osteoarthritis divided into two groups (adequate weight/adiposity and excessive weight/adiposity) according to body mass index and percent of body fat mass, assessed by electric bioimpedance. Subjects were evaluated for functional mobility (Timed Up and Go Test), pain, stiffness and function (Western Ontario and MacMaster Universities Osteoarthritis Index − WOMAC), pain intensity (Visual Analogue Scale − VAS) and pressure pain tolerance threshold (algometry in vastus medialis and vastus lateralis muscles). Data were analyzed with Statistical Package of the Social Sciences, version 22 for Windows. Comparisons between groups were made through Student’s t test, with significance level set at 5%. Results There was predominance of females in the sample (81.3%), and mean age was 61.8±10.1 years. When dividing the sample by both body mass index and adiposity, 89.7% of them had weight/adiposity excess, and 59.8% were obese. There was no difference between groups regarding age, pain intensity, pressure pain tolerance threshold, functional mobility, stiffness and function. However, pain (WOMAC) was higher (p=0.05) in the group of patients with weight or adiposity excess, and pain perception according to VAS was worse in the group of obese patients (p=0.05). Conclusion Excessive weight had negative impact in patients with osteoarthritis, increasing pain assessed by WOMAC or VAS, although no differences were observed in functionality and pressure pain tolerance.
PICK1 is essential for insulin production and the maintenance of glucose homeostasis

Protein interacting with C-kinase 1 (PICK1) is a peripheral membrane protein that controls insulin granule formation, trafficking, and maturation in INS-1E cells. However, global Pick1-knockout mice showed only a subtle diabetes-like phenotype. This raises the possibility that compensatory effects from tissues other than pancreatic beta cells may obscure the effects of insulin deficiency. To explore the role of PICK1 in pancreatic islets, we generated mice harboring a conditional Pick1 allele in a C57BL/6J background. The conditional Pick1-knockout mice exhibited impaired glucose tolerance, profound insulin deficiency, and hyperglycemia. In vitro experiments showed that the ablation of Pick1 in pancreatic beta cells selectively decreased the initial rapid release of insulin and the total insulin levels in the islets. Importantly, the specific ablation of Pick1 induced elevated proinsulin levels in the circulation and in the islets, accompanied by a reduction in the proinsulin processing enzymes prohormone convertase 1/3 (PC1/3). The deletion of Pick1 triggered the specific elimination of chromogranin B in pancreatic beta cells, which is believed to control granule formation and release. Collectively, these data demonstrate the critical role of PICK1 in secretory granule biogenesis, proinsulin processing, and beta cell function. We conclude that the beta cell–specific deletion of Pick1 in mice led to hyperglycemia and eventually to diabetes.
Kinetic Models of Cyclosporin A in Polar and Apolar Environments Reveal Multiple Congruent Conformational States

The membrane permeability of cyclic peptides and peptidomimetics, which are generally larger and more complex than typical drug molecules, is likely strongly influenced by the conformational behavior of these compounds in polar and apolar environments. The size and complexity of peptides often limit their bioavailability, but there are known examples of peptide natural products such as cyclosporin A (CsA) that can cross cell membranes by passive diffusion. CsA is an undecapeptide with seven methylated backbone amides. Its crystal structure shows a "closed" twisted β-pleated sheet conformation with four intramolecular hydrogen bonds that is also observed in NMR measurements of CsA in chloroform. When binding to its target cyclophilin, on the other hand, CsA adopts an "open" conformation without intramolecular hydrogen bonds. In this study, we attempted to sample the complete conformational space of CsA in chloroform and in water by molecular dynamics simulations in order to better understand its conformational behavior in these two environments and to rationalize the good membrane permeability of CsA observed experimentally. From 10 μs molecular dynamics simulations in each solvent, Markov state models were constructed to characterize the metastable conformational states. The model in chloroform is compared to nuclear Overhauser effect NMR spectroscopy data reported in this study and taken from the literature. The conformational landscapes in the two solvents show significant overlap but also clearly distinct features.