Miracle-dz/UniFAR-FTUs huggingface dataset:
Effects of long-term consumption and single meals of chickpeas on plasma glucose, insulin, and triacylglycerol concentrations.

BACKGROUND Legumes are recommended for better glucose control in persons with diabetes. Whether subjects with normal insulin sensitivity would also benefit from legume consumption is not clear. OBJECTIVE Our goal was to compare the effects on insulin sensitivity of chickpea-based and wheat-based foods when eaten as single meals or over 6 wk. DESIGN Acute and long-term studies were conducted in healthy middle-aged men and women. In the acute study (n = 19), plasma glucose, insulin, and calculated homeostasis model assessment (HOMA; an index of insulin sensitivity) were measured on 3 separated days over 3 h after the subjects consumed 50-g available carbohydrate loads from either chickpeas, wheat-based foods, or white bread. The long-term comparison (n = 20) was a randomized, crossover study in which chickpea-based and wheat-based foods were eaten for 6 wk each. Plasma glucose, insulin, and HOMA were measured in the fasting state and 2 h after a 75-g glucose load. RESULTS After single meals, plasma glucose was substantially lower 30 and 60 min after the chickpea meal than after the other 2 meals (P < 0.05), and plasma insulin and HOMA were lower at 120 min (P < 0.05 for both). Despite this, the long-term study failed to show significant differences in plasma glucose, insulin, or HOMA either in the fasting state or after a glucose load. CONCLUSION Compared with a wheat-based meal, a single chickpea-based meal led to a lesser response in plasma glucose and insulin concentrations, but this was not translated into long-term improvement in insulin sensitivity over 6 wk, at least in healthy subjects.
Acellular hemoglobin-mediated oxidative stress toward endothelium: a role for ferryl iron.

We tested the hypothesis that chemical modifications used to produce stable, oxygen-carrying, Hb-based blood substitutes can induce cytotoxicity in endothelial cells in culture because of altered redox activity. We examined the interaction of hydrogen peroxide with nonmodified hemoglobin (HbA0) and two chemically modified hemoglobins, α-cross-linked hemoglobin (α-DBBF) and its polymerized form (poly-α-DBBF). Hydrogen peroxide-induced cell death (as assessed by lactate dehydrogenase release) in bovine aortic endothelial cells (BAEC) was completely inhibited by all three hemoglobin preparations, consistent with their known pseudoperoxidase activity [hemoglobin consumes peroxide as it cycles between ferric (Fe3+) and ferryl (Fe4+) hemes]. However, reaction of the modified hemoglobins, but not HbA0, with hydrogen peroxide induced apoptotic cell death (as assessed by morphological changes and DNA fragmentation) that correlated with the formation of a long-lived ferrylhemoglobin. A preparation of ferryl-α-DBBF free of residual peroxide rapidly induced morphological changes and DNA fragmentation in BAEC, indicative of apoptotic cell death. Redox cycling of chemically modified hemoglobins by peroxide yielded a persistent ferryl iron that was cytotoxic to endothelial cells.
Antioxidants and physical performance in elderly persons: the Invecchiare in Chianti (InCHIANTI) study.

BACKGROUND Muscle strength and physical performance in old age might be related to the oxidative damage caused by free radicals. OBJECTIVE The objective was to assess the correlation of plasma concentrations and daily dietary intakes of antioxidants with skeletal muscle strength and physical performance in elderly persons. DESIGN This study is part of the Invecchiare in Chianti (InCHIANTI) study, which was conducted in 986 Italians aged > or = 65 y. Physical performance was assessed on the basis of walking speed, ability to rise from a chair, and standing balance. Knee extension strength was assessed with a hand-held dynamometer. The European Prospective Investigation into Cancer and Nutrition (EPIC) questionnaire was used to evaluate the daily dietary intakes of vitamin C, vitamin E, beta-carotene, and retinol. Plasma alpha- and gamma-tocopherol concentrations were measured. Adjusted linear regression analyses were used to calculate regression coefficients per SD increase in plasma concentrations and daily dietary intakes. RESULTS In adjusted analyses, plasma alpha-tocopherol was significantly correlated with knee extension (beta = 0.566, P = 0.003) and the summary physical performance score (beta = 0.044, P = 0.008). Plasma gamma-tocopherol was associated only with knee extension strength (beta = 0.327, P = 0.04). Of the daily dietary intake measures, vitamin C and beta-carotene were significantly correlated with knee extension strength, and vitamin C was significantly associated with physical performance (beta = 0.029, P = 0.04). CONCLUSIONS Plasma antioxidant concentrations correlate positively with physical performance and strength. Higher dietary intakes of most antioxidants, especially vitamin C, appear to be associated with higher skeletal muscular strength in elderly persons.
Connecting Visualization and Data Management Research (Dagstuhl Seminar 17461)

This report documents the program and the outcomes of Dagstuhl Seminar 17461 "Connecting Visualization and Data Management Research". Seminar November 12-17, 2017-http://www.dagstuhl. de/17461 What prevents analysts from acquiring wisdom from data sources? To use data, to better understand the world and act upon it, we need to understand both the computational and the human-centric aspects of data-intensive work. In this Dagstuhl Seminar, we sought to establish the foundations for the next generation of data management and visualization systems by bringing together these two largely independent communities. While exploratory data analysis (EDA) has been a pillar of data science for decades, maintaining interactivity during EDA has become difficult, as the data size and complexity continue to grow. Modern statistical systems often assume that all data need to fit into memory in order to support interactivity. However, when faced with a large amount of data, few techniques can support EDA fluidly. During this process, interactivity is critical: if each operation takes hours or even minutes to finish, analysts lose track of their thought process. Bad analyses cause bad interpretations, bad actions and bad policies. As data scale and complexity increases, the novel solutions that will ultimately enable interactive, large-scale EDA will have to come from truly interdisciplinary and international work. Today, database systems can store and query massive amounts of data, including methods for distributed, streaming and approximate computation. Data mining techniques provide ways to discover unexpected patterns and to automate and scale well-defined analysis Except where otherwise noted, content of this report is licensed under a Creative Commons BY 3.0 Unported license
The Joint Effect of Prenatal Exposure to Metal Mixtures on Neurodevelopmental Outcomes at 20–40 Months of Age: Evidence from Rural Bangladesh

Background: Exposure to chemical mixtures is recognized as the real-life scenario in all populations, needing new statistical methods that can assess their complex effects. Objectives: We aimed to assess the joint effect of in utero exposure to arsenic, manganese, and lead on children’s neurodevelopment. Methods: We employed a novel statistical approach, Bayesian kernel machine regression (BKMR), to study the joint effect of coexposure to arsenic, manganese, and lead on neurodevelopment using an adapted Bayley Scale of Infant and Toddler Development™. Third Edition, in 825 mother–child pairs recruited into a prospective birth cohort from two clinics in the Pabna and Sirajdikhan districts of Bangladesh. Metals were measured in cord blood using inductively coupled plasma-mass spectrometry. Results: Analyses were stratified by clinic due to differences in exposure profiles. In the Pabna district, which displayed high manganese levels [interquartile range (IQR): 4.8, 18μg/dl], we found a statistically significant negative effect of the mixture of arsenic, lead, and manganese on cognitive score when cord blood metals concentrations were all above the 60th percentile (As≥0.7μg/dl, Mn≥6.6μg/dl, Pb≥4.2μg/dl) compared to the median (As=0.5μg/dl, Mn=5.8μg/dl, Pb=3.1μg/dl). Evidence of a nonlinear effect of manganese was found. A change in log manganese from the 25th to the 75th percentile when arsenic and manganese were at the median was associated with a decrease in cognitive score of −0.3 (−0.5, −0.1) standard deviations. Our study suggests that arsenic might be a potentiator of manganese toxicity. Conclusions: Employing a novel statistical method for the study of the health effects of chemical mixtures, we found evidence of neurotoxicity of the mixture, as well as potential synergism between arsenic and manganese. https://doi.org/10.1289/EHP614
Improvements to Context Based Self-Supervised Learning

We develop a set of methods to improve on the results of self-supervised learning using context. We start with a baseline of patch based arrangement context learning and go from there. Our methods address some overt problems such as chromatic aberration as well as other potential problems such as spatial skew and mid-level feature neglect. We prevent problems with testing generalization on common self-supervised benchmark tests by using different datasets during our development. The results of our methods combined yield top scores on all standard self-supervised benchmarks, including classification and detection on PASCAL VOC 2007, segmentation on PASCAL VOC 2012, and "linear tests" on the ImageNet and CSAIL Places datasets. We obtain an improvement over our baseline method of between 4.0 to 7.1 percentage points on transfer learning classification tests. We also show results on different standard network architectures to demonstrate generalization as well as portability. All data, models and programs are available at: https://gdo-datasci.llnl. gov/selfsupervised/.
Angiotensin II modulates respiratory and acid-base responses to prolonged hypoxia in conscious dogs.

We tested the hypothesis that angiotensin II (ANG II) contributes to ventilatory and acid-base adaptations during 3-4 h of hypoxia (partial pressure of O2 in arterial blood ≈ 43 Torr) in the conscious dog. Three protocols were carried out over 3-4 h in five dogs: 1) air control, 2) 12% O2 breathing, and 3) 12% O2 breathing with ANG II receptors blocked by infusion of saralasin (0.5 μg ⋅ kg-1 ⋅ min-1). After 2 h of hypoxia, expired ventilation and alveolar ventilation progressively increased, and the partial pressure of CO2 in arterial blood and the difference between the arterial concentrations of strong cations and strong anions ([SID]) decreased. When the hypoxic chemoreceptor drive to breathe was abolished transiently for 30 s with 100% O2, the resultant central apneic time decreased between 0.5 and 2.5 h of hypoxia. All these adaptive responses to hypoxia were abolished by ANG II receptor block. Because plasma ANG II levels were lower during hypoxia and hypoxic release of arginine vasopressin from the pituitary into the plasma was prevented by ANG II receptor block, the brain renin-angiotensin system was likely involved. It is possible that ANG II mediates ventilatory and acid-base adaptive responses to prolonged hypoxia via alterations in ion transport to decrease [SID] in brain extracellular fluid rather than acting by a direct neural mechanism.
Reduced venous compliance in lower limbs of aging humans and its importance for capacitance function.

Venous compliance in the calf of humans and its importance for capacitance function in relation to age were studied with the aid of 22, 44, and 59 mmHg lower body negative pressure (LBNP). Negative pressure transmission to the calf as well as changes in calf volume were studied, and venous compliance was calculated [change in volume with pressure change (dV/dP)]. The change in capacitance response of the calf with age (20-70 yr) was evaluated during LBNP 44 mmHg. Transmission of negative pressure to the subcutaneous tissue was almost full without any changes with age (92%). However, it was reduced to 80% in the underlying muscle tissue, irrespective of depth. Venous compliance in the young was 0.051 ml ⋅ 100 ml-1 ⋅ mmHg-1and was reduced by 45% to 0.029 ml ⋅ 100 ml-1 ⋅ mmHg-1in the old ( P < 0.05). Accordingly, the capacitance response was reduced by 0.015 ml ⋅ 100 ml-1 ⋅ yr-1( P < 0.005). Furthermore, the hemodynamic response to hypovolemic circulatory stress was attenuated with age. The reduced pressure transmission in muscle tissue is probably due to restriction of the muscle fascia envelope. The reduced venous compliance with age and the concomitant reduction in capacitance response during LBNP have implications for both the sympathetic reflex responses as well as the capacitance response during acute hypovolemic circulatory stress, which might be defected in aging humans.
Calcium, protein, and fruit and vegetables as dietary determinants of bone health.

REFERENCES 1. Fields DA, Goran MI, McCrory MA. Body-composition assessment via air-displacement plethysmography in adults and children: a review. Am J Clin Nutr 2002;75:453–67. 2. Heymsfield SB, Lichtman S, Baumgartner RN, et al. Body composition of humans: comparison of two improved four-compartment models that differ in expense, technical complexity, and radiation exposure. Am J Clin Nutr 1990;52:52–8. 3. Baumgartner RN, Heymsfield SB, Lichtman S, Wang J, Pierson RN Jr. Body composition in elderly people: effect of criterion estimates on predictive equations. Am J Clin Nutr 1991;53:1345–53. 4. Wang ZM, Durenberg P, Guo SS, et al. Six-compartment body composition model: inter-method comparisons of total body fat measurements. Int J Obes Relat Metab Disord 1998;22:329–37. 5. Friedl KE, DeLuca JP, Marchitelli LJ, Vogel JA. Reliability of bodyfat estimations from a four-compartment model by using density, body water, and bone mineral measurements. Am J Clin Nutr 1992; 55:764–70. 6. Modlesky CM, Evans EM, Millard-Stafford ML, Collins MA, Lewis RD, Cureton KJ. Impact of bone mineral estimates on percent fat estimates from a four-component model. Med Sci Sports Exerc 1999;31:1861–8. 7. Wells JCK, Fuller NJ. Precision of measurement and body size in whole-body air-displacement plethysmography. Int J Obes Relat Metab Disord 2001;25:1161–7. 8. Kehayias JJ, Valtuena S. Neutron activation analysis determination of body composition. Curr Opin Clin Nutr Metab Care 1999;2: 453–63. 9. Kehayias JJ, Heymsfield SB, LoMonte AF, Wang J, Pierson RN Jr. In vivo determination of body fat by measuring total body carbon. Am J Clin Nutr 1991;53:1339–44. 10. Garrow JS, Stalley S, Diethelm R, Pittet P, Hesp R, Halliday D. A new method for measuring the body density of obese adults. Br J Nutr 1979;42:173–83.
Obesity in Developing Countries : Biological and Ecological Factors Obesity Trends in Latin America : Transiting from Under-to Overweight 1

Latin America is undergoing a rapid demographic and nutritional transition. A recent WHO/PAHO survey on obesity in the region revealed an increasing trend in obesity as countries emerge from poverty, especially in urban areas. In contrast, in middle income countries, obesity tends to decline as income increases; this is especially so in women. Dietary changes and increasing inactivity are considered the crucial contributory factors that explain this rise. The end result is a progressive rise in overweight and obesity, especially in low income groups who improve their income and buy high fat/high carbohydrate energy-dense foods. Intake of these foods increases to the detriment of grains, fruits and vegetables. Most aboriginal populations of the Americas have changed their diet and physical activity patterns to fit an industrialized country model. They now derive most of their diet from Western foods and live sedentary and physically inactive lives. Under these circumstances they develop high rates of obesity, insulin resistance and type 2 diabetes. Supplementary feeding programs are common in the region; the number of beneficiaries significantly exceeds the malnourished. Weight-for-age definition of undernutrition without assessment of length will overestimate the dimension of malnutrition and neglect the identification of stunted overweight children. Providing food to low income stunted populations may be beneficial for some, although it may be detrimental for others, inducing obesity especially in urban areas. Defining the right combination of foods/ nutrients, education and lifestyle interventions that are required to optimize nutrition and health is a present imperative. J. Nutr. 131: 893S–899S, 2001.
The glycemic index of foods influences postprandial insulin-like growth factor-binding protein responses in lean young subjects.

BACKGROUND Growth in normal and malignant tissues has been linked to hyperinsulinemia and insulin-like growth factors (IGFs). We hypothesized that IGF and IGF-binding protein (IGFBP) responses may be acutely affected by differences in the glycemic index (GI) of foods. OBJECTIVE We compared the postprandial responses of IGFs and IGFBP to 2 foods of similar macronutrient composition but with greatly different GIs-pearled barley (GI: 25) and instant mashed potato (GI: 85). DESIGN Ten young lean subjects consumed 50-g carbohydrate portions of the 2 foods or water (extended fast) in random order after an overnight fast. Capillary blood was collected at regular intervals over 4 h for measurement of blood glucose, insulin, and components of the IGF system. RESULTS Serum IGFBP-1 declined markedly after both meals, but the mean (+/-SEM) change at 4 h was significantly (P < 0.01) more prolonged after the low-GI meal (-55 +/- 20 ng/mL) than after the high-GI meal (-13 +/- 15 ng/mL). Conversely, the change in serum IGFBP-3 concentration at 4 h was significantly (P < 0.05) higher after the low-GI meal (251 +/- 102 ng/mL) than after the high-GI meal (-110 +/- 96 ng/mL); the same pattern was observed at 2 h. Changes in IGFBP-2, free IGF-1, and total IGF-1 responses were minimal and did not differ significantly from those during the 4-h fast. CONCLUSION Acute changes in IGFBP-3 after low-GI and high-GI foods may provide a biologic mechanism linking cell multiplication with greater consumption of high-GI carbohydrates.
Modeling of liquid–gas meniscus for textured surfaces: effects of curvature and local slip length

Surface texturing at the micro/nanolevel allows air to be trapped in sufficiently small cavities, thereby reducing the flow resistance over the surface in the laminar regime. The nature of the liquid–gas meniscus plays an important role in defining the boundary condition and it depends on the flow conditions and geometrical properties of textures. In the present work, we employ the unsteady volume of fluid model to investigate the behavior of the liquid–gas meniscus for ridges arranged normal to the flow direction to substantiate the frictional resistance of flow in a microchannel. It is found that the assumption of ‘zero shear stress’ at the liquid–gas interface grossly overpredicts the effective slip length with meniscus curvature and local partial slip length playing the dominant role. Numerical simulations performed in the laminar regime (20 < Re < 120) over single layered ridges normal to the flow direction revealed the effect of texture geometry on the reduction in pressure drop. In single layered structures, lotus-like geometries exhibited a greater reduction in drag (more than 30%) when compared to all other texture geometries. It is recognized that the flow experiences expansion and contraction cycles as it flows over the transverse ridges increasing the frictional resistance. Our findings will help to modify the boundary condition at the liquid–gas meniscus for accurate modeling in the laminar regime and to optimize the texture geometry to improve drag reduction.
Comparative analysis of adaptor-mediated clathrin assembly reveals general principles for adaptor clustering

Clathrin-mediated endocytosis sorts the bulk of membrane proteins and is a process that starts with adaptor-induced clathrin assembly. Real-time fluorescence analysis shows that adaptor sorting is determined not by the extent of clathrin recruited or the degree of clathrin clustered but instead by the rate of clathrin assembly.
How Subjective Well-Being Is Associated With Material Deprivation and Social Exclusion in Israeli 12-Year-Olds

The literature examining the relations between economic situation and happiness has focused almost exclusively on a household’s income as a proxy for economic situation and, accordingly, also focused chiefly on the adult population, excluding children and adolescents. To fill this gap, this study examines the relation between economic deprivation and happiness by using 2 alternative proxies: material deprivation and social exclusion. The study tests the relation of these measures to the most common measure for happiness—subjective well-being (SWB)—in a sample of Israeli 12-year-olds (N = 1,081). The study also examines the effects of culture and life circumstances on these complex relations. Findings show that both material deprivation and social exclusion are negatively associated with children’s SWB. Social exclusion explained a much larger percentage of children’s SWB, adding up to 20%. Furthermore, children who were identified as materially deprived and socially excluded were found to be at much greater risk for unhappiness. Material deprivation was found to be significantly more important to the SWB of males compared with females, and for Jews compared with Arabs. Finally, some implications for social policy and regarding the relation of economic situation and happiness are discussed.
BRICHOS domain of Bri2 inhibits islet amyloid polypeptide (IAPP) fibril formation and toxicity in human beta cells

Significance Accumulation of islet amyloid polypeptide (IAPP)-containing amyloid fibrils is the main pathological finding in pancreatic islets in type 2 diabetes. The formation of these IAPP amyloid fibrils is considered toxic and may constitute a major cause for the loss of insulin-producing beta cells. The protein domain BRICHOS is present in several different proproteins and possesses antiamyloid chaperone activity. This study demonstrates expression of the BRICHOS-containing protein Bri2 in human pancreatic beta cells and its colocalization with IAPP. The Bri2 BRICHOS domain effectively prevents IAPP from forming fibrils and protects cells from the toxicity associated with IAPP fibrillation. It is concluded that the Bri2 BRICHOS domain may act as an endogenous inhibitor of IAPP amyloid formation in pancreatic beta cells. Aggregation of islet amyloid polypeptide (IAPP) into amyloid fibrils in islets of Langerhans is associated with type 2 diabetes, and formation of toxic IAPP species is believed to contribute to the loss of insulin-producing beta cells. The BRICHOS domain of integral membrane protein 2B (Bri2), a transmembrane protein expressed in several peripheral tissues and in the brain, has recently been shown to prevent fibril formation and toxicity of Aβ42, an amyloid-forming peptide in Alzheimer disease. In this study, we demonstrate expression of Bri2 in human islets and in the human beta-cell line EndoC-βH1. Bri2 colocalizes with IAPP intracellularly and is present in amyloid deposits in patients with type 2 diabetes. The BRICHOS domain of Bri2 effectively inhibits fibril formation in vitro and instead redirects IAPP into formation of amorphous aggregates. Reduction of endogenous Bri2 in EndoC-βH1 cells with siRNA increases sensitivity to metabolic stress leading to cell death while a concomitant overexpression of Bri2 BRICHOS is protective. Also, coexpression of IAPP and Bri2 BRICHOS in lateral ventral neurons of Drosophila melanogaster results in an increased cell survival. IAPP is considered to be the most amyloidogenic peptide known, and described findings identify Bri2, or in particular its BRICHOS domain, as an important potential endogenous inhibitor of IAPP aggregation and toxicity, with the potential to be a possible target for the treatment of type 2 diabetes.