Miracle-dz/UniFAR-FTUs huggingface dataset:
CCR7 Deficiency Allows Accelerated Clearance of Chlamydia from the Female Reproductive Tract

Immune mechanisms responsible for pathogen clearance from the female reproductive tract (FRT) are incompletely defined; in particular, the contribution of lymphocyte trafficking to this process is unclear. CCR7-deficient mice have profoundly altered lymphocyte recirculation and display ectopic formation of lymphocyte aggregates within mucosal nonlymphoid tissues, including the FRT. In this study, we investigated how altered lymphocyte distribution in CCR7-deficient mice would affect host responses to Chlamydia muridarum within the reproductive tract. As expected, CCR7-deficient mice exhibited reduced lymphocyte trafficking to lymph nodes and a corresponding increase in T cell populations within the FRT. After intravaginal infection with Chlamydia, CCR7-deficient mice displayed markedly reduced Ag-specific CD4 T cell responses within the local draining iliac lymph nodes, yet robust Th1 and Th17 responses were prominent in the FRT. In addition, Chlamydia-specific Ab responses were dysregulated in CCR7-deficient mice, displaying an unexpected increase in the systemic IgA responses. Importantly, prominent mucosal immune responses in CCR7-deficient mice increased the efficiency of bacteria clearance from the FRT while reducing tissue-associated inflammation and pathology. Thus, increased numbers of lymphocytes within the FRT result in pathogen clearance with reduced immune-mediated pathology.
Private matching and set intersection computation in multi-agent and industrial control systems

Distributed autonomous systems that rely on dataset matching and set intersection computation for decision making capabilities are vulnerable to datasets poisoning attacks. Among these systems, Industrial Control Systems (ICS) operating on critical infrastructures. Attacker with a compromised Programmable Logic Controllers (PLCs) can take advantage of the PLC-to-PLC information sharing process to construct and inject anomalous data that target the result of dataset matching and set intersection computation and hence bring the process operations into unstable state. We introduce a protocol that utilizes secure hamming distance computation from oblivious transfer to compute a joint set between two system's agents that hold private input datasets of length n. The proposed protocol achieves full security in the semihonest model.
Association Between Wait Time and 30-Day Mortality in Adults Undergoing Hip Fracture Surgery

Importance Although wait times for hip fracture surgery have been linked to mortality and are being used as quality-of-care indicators worldwide, controversy exists about the duration of the wait that leads to complications. Objective To use population-based wait-time data to identify the optimal time window in which to conduct hip fracture surgery before the risk of complications increases. Design, Setting, and Participants Population-based, retrospective cohort study of adults undergoing hip fracture surgery between April 1, 2009, and March 31, 2014, at 72 hospitals in Ontario, Canada. Risk-adjusted restricted cubic splines modeled the probability of each complication according to wait time. The inflection point (in hours) when complications began to increase was used to define early and delayed surgery. To evaluate the robustness of this definition, outcomes among propensity-score matched early and delayed surgical patients were compared using percent absolute risk differences (RDs, with 95% CIs). Exposure Time elapsed from hospital arrival to surgery (in hours). Main Outcomes and Measures Mortality within 30 days. Secondary outcomes included a composite of mortality or other medical complications (myocardial infarction, deep vein thrombosis, pulmonary embolism, and pneumonia). Results Among 42 230 patients with hip fracture (mean [SD] age, 80.1 years [10.7], 70.5% women) who met study entry criteria, overall mortality at 30 days was 7.0%. The risk of complications increased when wait times were greater than 24 hours, irrespective of the complication considered. Compared with 13 731 propensity-score matched patients who received surgery earlier, 13 731 patients who received surgery after 24 hours had a significantly higher risk of 30-day mortality (898 [6.5%] vs 790 [5.8%]; % absolute RD, 0.79; 95% CI, 0.23-1.35) and the composite outcome (1680 [12.2%]) vs 1383 [10.1%]; % absolute RD, 2.16; 95% CI, 1.43-2.89). Conclusions and Relevance Among adults undergoing hip fracture surgery, increased wait time was associated with a greater risk of 30-day mortality and other complications. A wait time of 24 hours may represent a threshold defining higher risk.
CTPPL: A Continuous Time Probabilistic Programming Language

Probabilistic programming languages allow a modeler to build probabilistic models using complex data structures with all the power of a programming language. We present CTPPL, an expressive probabilistic programming language for dynamic processes that models processes using continuous time. Time is a first class element in our language; the amount of time taken by a subprocess can be specified using the full power of the language. We show through examples that CTPPL can easily represent existing continuous time frameworks and makes it easy to represent new ones. We present semantics for CTPPL in terms of a probability measure over trajectories. We present a particle filtering algorithm for the language that works for a large and useful class of CTPPL programs.
Effects of increased vertebral number on carcass weight in PIC pigs.

Variation of the vertebral number is associated with carcass traits in pigs. However, results from different populations do not match well with others, especially for carcass weight. Therefore, effects of increased vertebral number on carcass weight were investigated by analyzing the relationship between two loci multi-vertebra causal loci (NR6A1 g.748 C > T and VRTN g.20311_20312ins291) and carcass weight in PIC pigs. Results from the association study between vertebral number and carcass weight showed that increased thoracic number had negative effects on carcass weight, but the results were not statistically significant. Further, VRTN Ins/Ins genotype increased more than one thoracic than that of Wt/Wt genotype on average in this PIC population. Meanwhile, there was a significant negative effect of VRTN Ins on carcass weight (P < 0.05). Thus, our results suggested negative effect of increased thoracic number on carcass weight in PIC pigs.
Thalamic volume reduction in drug‐naive patients with new‐onset genetic generalized epilepsy

Patients with genetic generalized epilepsy (GGE) have subtle morphologic abnormalities of the brain revealed with magnetic resonance imaging (MRI), particularly in the thalamus. However, it is unclear whether morphologic abnormalities of the brain in GGE are a consequence of repeated seizures over the duration of the disease, or are a consequence of treatment with antiepileptic drugs (AEDs), or are independent of these factors. Therefore, we measured brain morphometry in a cohort of AED‐naive patients with GGE at disease onset. We hypothesize that drug‐naive patients at disease onset have gray matter changes compared to age‐matched healthy controls.
Association between single nucleotide polymorphisms of TPH1 and TPH2 genes, and depressive disorders

Tryptophan catabolites pathway disorders are observed in patients with depression. Moreover, single nucleotide polymorphisms of tryptophan hydroxylase genes may modulate the risk of depression occurrence. The objective of our study was to confirm the association between the presence of polymorphic variants of TPH1 and TPH2 genes, and the development of depressive disorders. Six polymorphisms were selected: c.804‐7C>A (rs10488682), c. ‐1668T>A (rs623580), c.803+221C>A (rs1800532), c. ‐173A>T (rs1799913)—TPH1, c. ‐1449C>A (rs7963803), and c. ‐844G>T (rs4570625)—TPH2. A total of 510 DNA samples (230 controls and 280 patients) were genotyped using TaqMan probes. Among the studied polymoorphisms, the G/G genotype and G allele of c.804‐7C>A—TPH1, the T/T homozygote of c.803+221C>A—TPH1, the A/A genotype and A allele of c.1668T>A—TPH1, the G/G homozygote and G allele of c. ‐844G>T—TPH2, and the C/A heterozygote and A allele of c. ‐1449C>A—TPH2 were associated with the occurrence of depression. However, the T/T homozygote of c. ‐1668T>A—TPH1, the G/T heterozygote and T allele of c. ‐844G>T—TPH2, and the C/C homozygote and C allele of c. ‐1449C>A—TPH2 decreased the risk of development of depressive disorders. Each of the studied polymorphisms modulated the risk of depression for selected genotypes and alleles. These results support the hypothesis regarding the involvement of the pathway in the pathogenesis of depression.
Nocturnal insomnia symptoms and stress-induced cognitive intrusions in risk for depression: A 2-year prospective study

Nearly half of US adults endorse insomnia symptoms. Sleep problems increase risk for depression during stress, but the mechanisms are unclear. During high stress, individuals having difficulty falling or staying asleep may be vulnerable to cognitive intrusions after stressful events, given that the inability to sleep creates a period of unstructured and socially isolated time in bed. We investigated the unique and combined effects of insomnia symptoms and stress-induced cognitive intrusions on risk for incident depression. 1126 non-depressed US adults with no history of DSM-5 insomnia disorder completed 3 annual web-based surveys on sleep, stress, and depression. We examined whether nocturnal insomnia symptoms and stress-induced cognitive intrusions predicted depression 1y and 2y later. Finally, we compared depression-risk across four groups: non-perseverators with good sleep, non-perseverators with insomnia symptoms, perseverators with good sleep, and perseverators with insomnia symptoms. Insomnia symptoms (β = .10–.13, p < .001) and cognitive intrusions (β = .19–.20, p < .001) predicted depression severity 1y and 2y later. Depression incidence across 2 years was 6.2%. Perseverators with insomnia had the highest rates of depression (13.0%), whereas good sleeping non-perseverators had the lowest rates (3.3%, Relative Risk = 3.94). Perseverators with sleep latency >30 m reported greater depression than good sleeping perseverators (t = 2.09, p < .04). Cognitive intrusions following stress creates a depressogenic mindset, and nocturnal wakefulness may augment the effects of cognitive arousal on depression development. Poor sleepers may be especially vulnerable to cognitive intrusions when having difficulty initiating sleep. As treatable behaviors, nighttime wakefulness and cognitive arousal may be targeted to reduce risk for depression in poor sleepers.
[AR-V7 Androgen Receptor Variant as a Predictor of Response to Androgen-receptor Targeting Agents Used to Treat Castration-refractory Metastatic Prostate Cancer].

BACKGROUND Several systemic treatment options are currently available for patients with metastatic castration-refractory prostate cancer (mCRPC), including the androgen-receptor targeting agents (ARTA) enzalutamide and abiraterone, the taxanes docetaxel and cabazitaxel, and the radioisotope drug 223-radium dichloride. In some patients with mCRCP, alternative splicing of androgen receptor (AR) mRNA occurs, resulting in the formation of a truncated AR lacking the androgen-binding domain. These receptors activate downstream signalling pathways even without the ligand. Recent studies show that the presence of the AR-V7 (ARV - AR variants) splicing variant is associated with resistance to ARTA. Bec>ause the presence of AR-V7 does not affect the efficacy of other systemic therapies used in mCRCPs, particularly taxanes, AR-V7 is a candidate predictive biomarker for the individualisation of mCRCP treatment. Two types of assays based on mRNA or abnormal protein detection are used to detect AR-V7 in circulating tumour cells. AIM To describe the current status of AR-V7 testing in mCRPC and possible applications of this method for predicting outcomes of ARTA therapy. CONCLUSION The percentage of CTC AR-V7+ in ARTA-naive men is relatively low at baseline, but in patients pretreated with ARTA, the prevalence of AR-V7 increases to 19-34%. Given the relatively high expected prevalence, AR-V7 testing may be economically feasible in this population. The proportion of AR-V7+ patients responding to ARTA retreatment appears to be very low, at only 4.8%. AR-V7 testing could thus be useful if an ARTA switch is considered in a patient progressing onto an ARTA drug. Both protein-based tests and mRNA-based tests are currently undergoing clinical validation in prospective studies, with results expected within a year.Key words: prostate cancer - abiraterone - enzalutamide - alternative splicing - drug resistanceSubmitted: 30. 8. 2017Accepted: 5. 11. 2017 doc. MUDr. Tomáš Büchler, Ph.D. received honorary lectures and publications from Astellas and Janssen and a travel grant from Janssen. Supported by Ministry of Health, Czech Republic - conceptual development of research organization Thomayer Hospital - TN 0064190. The Editorial Board declares that the manuscript met the ICMJE recommendation for biomedical papers.
Life estimation and investigation of dielectric strength of multistressed high-voltage epoxy micro and nanocomposites

Epoxy/silica micro and nanocomposites are prepared and subjected to multiple accelerated stresses along with neat epoxy for 9000 h in a specially fabricated chamber. Leakage current measurements were recorded after each weather cycle. Dielectric strength was also evaluated according to ASTM-D149 after each 1000 h ageing. In the course of ageing time, neat epoxy was found with high dielectric loss and random rise in leakage current. In the case of both micro and nanocomposites, these properties indicated improvements over neat epoxy. By applying regression technique over leakage current measurements, relatively longer service lives of epoxy composites were estimated.
Measuring line-of-sight-dependent Fourier-space clustering using FFTs

Observed galaxy clustering exhibits local transverse statistical isotropy around the lineof-sight (LOS). The variation of the LOS across a galaxy survey complicates the measurement of the observed clustering as a function of the angle to the LOS, as fast Fourier transforms (FFTs) based on Cartesian grids, cannot individually allow for this. Recent advances in methodology for calculating LOS-dependent clustering in Fourier space include the realization that power spectrum LOS-dependent moments can be constructed from sums over galaxies, based on approximating the LOS to each pair of galaxies by the LOS to one of them. We show that we can implement this method using multiple FFTs, each measuring the LOS-weighted clustering along different axes. The N logN nature of FFTs means that the computational speed-up is a factor of > 1000 compared with summing over galaxies. This development should be beneficial for future projects such as DESI and Euclid which will provide an order of magnitude more galaxies than current surveys.
Squamous Cell Carcinoma of the Bulbar Urethra Accompanied by Lichen Sclerosus: A Case Report

Squamous cell carcinoma (SCC) of the bulbar urethra accompanied by lichen sclerosus (LS) is rarely reported. This study reports the case of a 56-year-old man with urethral squamous cell carcinoma (USCC) accompanied by a long history of genital LS. The man presented with a painful perineal mass and had a long-term history of urethral strictures and urethral dilatation. The patient developed a periurethral abscess that expanded to the perineum and formed an urethrocutaneousperineal fistula. An organ-sparing perineal resection and fistulectomy was performed according to the patient’s wishes. During the operation, residue-like pus mixed with necrotic tissues drained out. A section of the prepuce and the necrotic tissues were sent for histological analysis. Hematoxylin and eosin (HE) staining of the excised prepuce revealed classical LS. HE and immunohistochemical (IHC) staining of the necrotic tissues showed well-differentiated USCC. IHC staining showed the USCC to be positive for P53 and Ki-67 and negative for P16, suggesting the USCC was probably associated with LS. The patient received high-dose chemotherapy and radiation therapy and died 10 months after surgery.
The effect of oxygen on fermentation of sucrose by rumen micro-organisms in vitro

1. The effect of oxygen on the fermentation of sucrose by mixed rumen micro-organisms in vitro was studied by adding oxygen to the gas phase in three ways: at the beginning of incubation, at two hourly intervals during incubation and continuously. 2. The additions of oxygen had no measurable effect on the utilization of sucrose or on the production of carbon dioxide, steam-volatile acids and particulate organic matter by the micro-organisms. The addition of oxygen at the beginning of incubation inhibited methane production and increased the accumulation of hydrogen. Similar but much less pronounced changes occurred when the oxygen was infused continuously. 3. In all the experiments there was a net uptake of oxygen by micro-organisms. When large amounts of oxygen were present in the gas phase the rates of uptake were proportional to these amounts. When small amounts of oxygen were added, the rates of uptake were independent of the amount added and had a value of approximately 5 ml/h when 100 ml of strained rumen contents were incubated.
Invasive Streptococcus Pneumoniae Infection Causing Cardioembolic Stroke: A Clinical Proximity to Austrian Syndrome

Streptococcus pneumoniae (S. pneumoniae) is a significant human bacterial pathogen and the major cause of pneumonia. In the post-antibiotic era, S. pneumoniae endocarditis is rare but carries a high risk of central nervous system (CNS) involvement. We present a case of invasive S. pneumoniae infection, which led to a cardioembolic stroke in a young man from septic emboli. Diagnosing a disseminated S. pneumoniae infection at an early stage is crucial and may improve patient outcomes.
Prevalence and characteristics of adverse drug reactions at admission to hospital: a prospective observational study

Aims Adverse drug reactions (ADRs) contribute to poorer patient outcomes and additional burden to the healthcare system. However, data on the true burden, relevant types and drugs causing ADRs are lacking. The aim of this study was to determine the prevalence of ADR‐related hospitalization in the general adult population in Singapore and to investigate their characteristics. Methods We prospectively recruited 1000 adult patients with unplanned admission to a large tertiary‐care hospital. Two independent reviewers evaluated all suspected ADRs for causality, type, severity and avoidability. The prevalence of ADR‐related hospitalization was calculated based on ‘definite’ and ‘probable’ ADRs. Logistic regression was used to evaluate predictors for having an ADR at admission. Results The prevalence of all ADRs at admission was 12.4% (95% CI: 10.5–14.6%) and ADRs causing admission was 8.1% (95% CI: 6.5–10.0%). The most common ADRs were gastrointestinal‐related. The most common drug category causing ADRs were cardiovascular drugs. Patients with ADRs had a longer length of stay than those who did not (median 4 vs. 3 days, P = 1.70 × 10−3). About 30% of ADRs at admission were caused by at least one drug with a clinical annotation in the Pharmacogenomics KnowledgeBase (PharmGKB), suggesting that some of these ADRs may have been predicted by pharmacogenetic testing. Conclusions We have quantified the burden and characteristics of clinically impactful ADRs in the Singaporean general adult population. Our results will provide vital information for efforts in reducing ADRs through targeted vigilance, patient education and pharmacogenomics in Singapore.
A Sub-Nyquist Sampling Algorithm for Fractional Bandlimited Signals Based on AIC

Sampling theorems for fractional Fourier bandlimited signals have been developed due to the advantages of the fractional Fourier transformation. It may be difficult to put those theories into practice, because the sampling rate must be no less than twice the maximum fractional “frequency” of signal. This brief investigates sampling theorems of the fractional bandlimited signal, then introduces a sub-Nyquist sampling method which extends the modulated wideband converter to the fractional Fourier domain by a fractional shift invariant operator. The proposed method can effectively reduce the sampling rate for the fractional multiband signal. The sampled signals can be recovered by a matching pursuit algorithm. Simulation results verify the effectiveness of the proposed algorithm by discussing the robustness, recovery accuracy, and influence of the fractional order.
Green Roofs as Urban Ecosystems: Ecological Structures, Functions, and Services

ABSTRACT Green roofs (roofs with a vegetated surface and substrate) provide ecosystem services in urban areas, including improved storm-water management, better regulation of building temperatures, reduced urban heat-island effects, and increased urban wildlife habitat. This article reviews the evidence for these benefits and examines the biotic and abiotic components that contribute to overall ecosystem services. We emphasize the potential for improving green-roof function by understanding the interactions between its ecosystem elements, especially the relationships among growing media, soil biota, and vegetation, and the interactions between community structure and ecosystem functioning. Further research into green-roof technology should assess the efficacy of green roofs compared to other technologies with similar ends, and ultimately focus on estimates of aggregate benefits at landscape scales and on more holistic cost-benefit analyses.
Corrosion property of the laser welded joint of high-strength galvanized sheet

During laser welding of high-strength galvanized steel,the galvanized layer is inevitably lost due to burn.To study the resisting causticity of the joint,salt water with the mass fraction of 0.03 is used in the corrosion test for the samples welded under different laser parameters.The metallography of the workpiece was obtained before and after corrosion respectively.The test results indicate that the corrosion rate of the joint between the high-strength galvanized steels welded by laser under different welding parameters is different,but the average corrosion rate is coincident with that of substance and never debasing causticity.