Miracle-dz/UniFAR-FTUs huggingface dataset:
Third-order momentum correlation interferometry maps for entangled quantal states of three singly trapped massive ultracold fermions

Analytic higher-order momentum correlation functions associated with the time-of-flight spectroscopy of three ultracold fermionic atoms singly-confined in a linear three-well optical trap are presented, corresponding to the W- and Greenberger-Horne-Zeilinger-type (GHZ) states that belong to characteristic classes of tripartite entanglement and represent the strong-interaction regime captured by a three-site Heisenberg Hamiltonian. The methodology introduced here contrasts with and goes beyond that based on the standard Wick's factorization scheme; it enables determination of both third-order and second-order spin-resolved and spin-unresolved momentum correlations, aiming at matter-wave interference investigations with trapped massive particles in analogy with, and having the potential for expanding the scope of, recent three-photon quantum-optics interferometry.
The Relationship between Socioeconomic Characteristics and School-Level Performance Assessment Results.

The purpose of this study was to investigate the relationship between selected contextual and socioeconomic variables and school-level results from a statewide, performance-based student assessment system. Multiple regression analyses were conducted using data gathered over a three year period from 49 schools in one school district. Results showed that a single socioeconomic variable, the percent of students qualifying for free or reduced lunch benefits, explained a large portion of the variation in scores at all school levels. Contextual or socioeconomic indicators were not, however, predictive of improvements in scores from year to year. Possible explanations for these results and school level differences are discussed, along with implications for performancebased student assessment systems.
The complete chloroplast genome sequences of three Broussonetia species and comparative analysis within the Moraceae

Background Species of Broussonetia (family Moraceae) are commonly used to make textiles and high-grade paper. The distribution of Broussonetia papyrifera L. is considered to be related to the spread and location of humans. The complete chloroplast (cp) genomes of B. papyrifera, Broussonetia kazinoki Sieb. , and Broussonetia kaempferi Sieb. were analyzed to better understand the status and evolutionary biology of the genus Broussonetia. Methods The cp genomes were assembled and characterized using SOAPdenovo2 and DOGMA. Phylogenetic and molecular dating analysis were performed using the concatenated nucleotide sequences of 35 species in the Moraceae family and were based on 66 protein-coding genes (PCGs). An analysis of the sequence divergence (pi) of each PCG among the 35 cp genomes was conducted using DnaSP v6. Codon usage indices were calculated using the CodonW program. Results All three cp genomes had the typical land plant quadripartite structure, ranging in size from 160,239 bp to 160,841 bp. The ribosomal protein L22 gene (RPL22) was either incomplete or missing in all three Broussonetia species. Phylogenetic analysis revealed two clades. Clade 1 included Morus and Artocarpus, whereas clade 2 included the other seven genera. Malaisia scandens Lour. was clustered within the genus Broussonetia. The differentiation of Broussonetia was estimated to have taken place 26 million years ago. The PCGs’ pi values ranged from 0.0005 to 0.0419, indicating small differences within the Moraceae family. The distribution of most of the genes in the effective number of codons plot (ENc-plot) fell on or near the trend line; the slopes of the trend line of neutrality plots were within the range of 0.0363–0.171. These results will facilitate the identification, taxonomy, and utilization of the Broussonetia species and further the evolutionary studies of the Moraceae family.
SPR Based Biosensing Chip for COVID-19 Diagnosis—A Review

Surface Plasmon Resonance (SPR) techniques are highly accurate in detecting biomolecular like blood group measurement, food adulteration, milk adulteration and recently developing as a rapid detection for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus. In order to validate the clinical diagnosis, Real-time reverse transcriptase–polymerase chain reaction (RT-PCR) of nasopharyngeal swabs has been utilized, which is time consuming and expensive. For fast and accurate detection of the SARS-CoV-2 virus, SPR based biosensing chips are described in this review article. SPR sensors have the potential to be employed for fast, accurate, and portable SARS-CoV-2 virus diagnosis. To combat the SARS-CoV-2 pandemic, there is considerable interest in creating innovative biosensors that are quick, reliable, and sensitive for COVID-19 diagnosis.
Thermodynamics of D-brane probes

We discuss the dynamics and thermodynamics of particle and D-brane probes moving in non-extremal black hole/brane backgrounds. When a probe falls from asymptotic infinity to the horizon, it transforms its potential energy into heat, TdS, which is absorbed by the black hole in a way consistent with the first law of thermodynamics. We show that the same remains true in the near-horizon limit, for BPS probes only, with the BPS probe moving from AdS infinity to the horizon. This is a quantitative indication that the brane-probe reaching the horizon corresponds to thermalization in gauge theory. It is shown that this relation provides a way to reliably compute the entropy away from the extremal limit (towards the Schwarzschild limit).
Analysis of the Synchrotron Emission from the M87 Jet

We propose that the intensity changes and spectral evolution along the M87 jet can be explained by adiabatic changes to the particle momentum distribution function and the magnetic ﬁeld. This is supported by the lack of any signiﬁcant variation in the radio–to–optical spectral index along the jet and the moderate changes in radio brightness. Assuming a simple scaling law between magnetic ﬁeld and density, we use the deprojection of a 2 cm VLA intensity map by Sparks, Biretta, & Macchetto (1996) to predict the spectral evolution along the jet. We derive limits for the magnetic ﬁeld and the total pressure by comparing our results with the spatially resolved ﬁt to spectral data by Neumann, Meisenheimer, & R¨oser (1997) of a model spectrum that cuts oﬀ at ≈ 10 15 Hz. To explain the weakness of synchrotron cooling along the jet , the magnetic ﬁeld strength must lie below the equipartition value. Although the inferred pressure in the limit of nonrelativistic bulk ﬂow lies far above the estimated pressure of the interstellar matter in the center of M87, bulk Lorentz factors Γ jet in the range of 3 − 5 and inclination angles θ LOS ∼ < 25 ◦ lead to pressure estimates close to the ISM pressure. The average best ﬁt magnetic ﬁelds we derive fall in the range of 20 − 40 µ G, departing from equipartition by a factor ≈ 1 . 5 − 5. This model is consistent with the proposal by Bicknell & Begelman (1996) that the knots in the M87 jet are weak, oblique shocks. First–order Fermi acceleration will then have a minimal eﬀect on the slope of the radio–to–optical spectrum while possibly accounting for the X-ray spectrum.
Use of fermented spent coffee grounds as a substrate supplement for rearing black soldier fly larvae, Hermetia illucens (L), (Diptera: Stratiomyidae)

Background Spent coffee grounds (SCG), an increasingly abundant waste product with environmental disposal problems, has been used as a dietary supplement for many animals and have the potential to be used as a dietary supplement for black soldier fly (BSF) larvae; however, its effective use is still under scrutiny. To date, no studies have considered the use of SCG after microbial fermentation (fSCG) and its effects on BSF life history. Methods A mixture of fruit and vegetable pulp residue supplemented with one of six different fSCG percentages (0%, 20%, 40%, 60%, 80%, and 100% by weight) were provided as a diet substrate in order to evaluate the effect of the fSCG quantity on BSF growth, yield, and conversion ability. Results The addition of fSCG to the pulp diet prolonged larval development times, while 100% fSCG affected the larval survival rate and resulted in a male-biased adult sex ratio. The 20–40% fSCG and 40–60% fSCG treatments supported the largest prepupal and mature larval sizes, respectively. The highest waste reduction efficiency and feed conversion rate by BSF larvae was found with 20% fSCG, similar to the control (0% fSCG). Discussion From the short rearing time, high yield, and high bioconversion efficiency, a 20% fSCG supplementation of the mixed pulp was recommended for rearing BSF larvae. These data are valuable for coffee by-product waste management in urban areas.
A Novel Multi-Epitope Edible Vaccine Candidate for Newcastle Disease Virus: In Silico Approach

Background: Newcastle disease, is one of the most important illnesses in the aviculture industry which shows a constant threat. In this case, the vaccine could be considered an important solution to prevent and control this disease. So, the development of a new and more effective vaccine against Newcastle disease is an urgent need. Immune informatics is an important field that provides insight into the experimental procedure and could facilitate the analysis of large amounts of immunological data generated by experimental research and help to design a new vaccine candidate. Objectives: This study is aimed at bioinformatics to investigate and select the most immunogenic and conserved epitopes derived from F and HN glycoproteins, which play a key role in pathogenesis and immunity. This strategy could cover a wide range of Newcastle disease viruses. Materials and Method: For expression in both E. coli (as an injectable recombinant vaccine candidate) and maize plant (as an edible vaccine candidate) host, two constructs were designed and analyzed separately. Furthermore, the role of LTB as an effective bio-adjuvant for general eliciting of the immune system and simultaneous expressions with those two antigens was evaluated. Hence, here a multimeric recombinant protein with the abbreviation LHN2F from the highly immunogenic part of HN, F and LTB proteins were designed. The synthetic construct was analyzed based on different bioinformatics tools. Results: The proper immunogenicity and stability of this multimeric fusion protein have been shown by immunoinformatic methods from various servers. To confirm the function of the designed protein, the final molecule was docked to chicken MHC class I using the Pyrex-python 0.8 program. the results of Immune Epitope analysis were confirmed by the docking results between protein and receptor. Conclusions: ‎The results of structural and immunological computational studies proposed that the protein deduced from this novel construct could act as a vaccine candidate for Newcastle disease virus‎ control and prophylactic.
PHIBSS2: survey design and z = 0.5 – 0.8 results

Following the success of the Plateau de Bure high-z Blue Sequence Survey (PHIBSS), we present the PHIBSS2 legacy program, a survey of the molecular gas properties of star-forming galaxies on and around the star-formation main sequence (MS) at different redshifts using IRAM’s NOrthern Extended Millimeter Array (NOEMA). This survey significantly extends the existing sample of star-forming galaxies with CO molecular gas measurements, probing the peak epoch of star formation (z = 1 − 1.6) as well as its building-up (z = 2 − 3) and winding-down (z = 0.5 − 0.8) phases. The targets are drawn from the well-studied GOODS, COSMOS, and AEGIS cosmological deep fields and uniformly sample the MS in the stellar mass (M⋆) – star formation rate (SFR) plane with log(M⋆/M⊙) = 10 − 11.8 and SFR = 3.5 − 500 M⊙ yr−1 without morphological selection, thus providing a statistically meaningful census of star-forming galaxies at different epochs. We describe the survey strategy and sample selection before focusing on the results obtained at redshift z = 0.5 − 0.8, where we report 60 CO(2-1) detections out of 61 targets. We determine molecular gas masses between 2 × 109 and 5 × 1010 M⊙ and separately obtain disc sizes and bulge-to-total (B/T) luminosity ratios from HST I-band images. The median molecular gas-to-stellar mass ratio μgas∼ = 0.28 ± 0.04, gas fraction fgas∼ = 0.22 ± 0.02, and depletion time $ \widetilde{t_{\mathrm{depl}}} = 0.84 \pm 0.07\,\mathrm{Gyr} $ as well as their dependence with stellar mass and offset from the MS follow published scaling relations for a much larger sample of galaxies spanning a significantly wider range of redshifts, the cosmic evolution of the SFR being mainly driven by that of the molecular gas fraction. The galaxy-averaged molecular Kennicutt–Schmidt (KS) relation between molecular gas and SFR surface densities is strikingly linear, pointing towards similar star formation timescales within galaxies at any given epoch. In terms of morphology, the molecular gas content, the SFR, the disc stellar mass, and the disc molecular gas fraction do not seem to correlate with B/T and the stellar surface density, which suggests an ongoing supply of fresh molecular gas to compensate for the build-up of the bulge. Our measurements do not yield any significant variation of the depletion time with B/T and hence no strong evidence for morphological quenching within the scatter of the MS.
Comparisons of Jet Properties between GeV Radio Galaxies and Blazars

We compile a sample of spectral energy distributions (SEDs) of 12 GeV radio galaxies (RGs), including eight FR I RGs and four FR II RGs. These SEDs can be represented with the one-zone leptonic model. No significant unification, as expected in the unification model, is found for the derived jet parameters between FR I RGs and BL Lacertae objects (BL Lacs) and between FR II RGs and flat spectrum radio quasars (FSRQs). However, on average FR I RGs have a larger γ b (break Lorentz factor of electrons) and lower B (magnetic field strength) than FR II RGs, analogous to the differences between BL Lacs and FSRQs. The derived Doppler factors (δ) of RGs are on average smaller than those of blazars, which is consistent with the unification model such that RGs are the misaligned parent populations of blazars with smaller δ. On the basis of jet parameters from SED fits, we calculate their jet powers and the powers carried by each component, and compare their jet compositions and radiation efficiencies with blazars. Most of the RG jets may be dominated by particles, like BL Lacs, not FSRQs. However, the jets of RGs with higher radiation efficiencies tend to have higher jet magnetization. A strong anticorrelation between synchrotron peak frequency and jet power is observed for GeV RGs and blazars in both the observer and co-moving frames, indicating that the “sequence” behavior among blazars, together with the GeV RGs, may be intrinsically dominated by jet power.
Wakes in stratified atmospheric boundary layer flows: an LES investigation

Large eddy simulations and three-dimensional proper orthogonal decomposition were used to study the interaction between a large stationary and moving bluff body and a high Reynolds number stably-stratified turbulent boundary layer. An immersed boundary method is utilized to take into account the effect of the bluff body on the boundary layer flow and turbulent inflow conditions upstream of the bluff body are imposed by employing a concurrent precursor simulation method both because a pseudo-spectral method is utilized in the horizontal directions. The dominant POD mode type was observed to occur at higher energy levels in the more turbulent wakes. Varying the thermal stratification showed only a slight effect on the turbulent statistics, but a significant effect on the number of dominant POD modes at the highest energy levels.
Combining angular differential imaging and accurate polarimetry with SPHERE/IRDIS to characterize young giant exoplanets

Young giant exoplanets emit infrared radiation that can be linearly polarized up to several percent. This linear polarization can trace: 1) the presence of atmospheric cloud and haze layers, 2) spatial structure, e.g. cloud bands and rotational flattening, 3) the spin axis orientation and 4) particle sizes and cloud top pressure. We introduce a novel high-contrast imaging scheme that combines angular differential imaging (ADI) and accurate near-infrared polarimetry to characterize self-luminous giant exoplanets. We implemented this technique at VLT/SPHEREIRDIS and developed the corresponding observing strategies, the polarization calibration and the data-reduction approaches. The combination of ADI and polarimetry is challenging, because the field rotation required for ADI negatively affects the polarimetric performance. By combining ADI and polarimetry we can characterize planets that can be directly imaged with a very high signal-to-noise ratio. We use the IRDIS pupil-tracking mode and combine ADI and principal component analysis to reduce speckle noise. We take advantage of IRDIS’ dual-beam polarimetric mode to eliminate differential effects that severely limit the polarimetric sensitivity (flat-fielding errors, differential aberrations and seeing), and thus further suppress speckle noise. To correct for instrumental polarization effects, we apply a detailed Mueller matrix model that describes the telescope and instrument and that has an absolute polarimetric accuracy ≤ 0.1%. Using this technique we have observed the planets of HR 8799 and the (sub-stellar) companion PZ Tel B. Unfortunately, we do not detect a polarization signal in a first analysis. We estimate preliminary 1σ upper limits on the degree of linear polarization of ∼ 1% and ∼ 0.1% for the planets of HR 8799 and PZ Tel B, respectively. The achieved sub-percent sensitivity and accuracy show that our technique has great promise for characterizing exoplanets through direct-imaging polarimetry
Improving Patch Quality by Enhancing Key Components of Automatic Program Repair

The error repair process in software systems is, historically, a resource-consuming task that relies heavily in developer manual effort. Automatic program repair approaches enable the repair of software with minimum human interaction, therefore, mitigating the burden from developers. However, a problem automatically generated patches commonly suffer is generating low-quality patches (which overfit to one program specification, thus not generalizing to an independent oracle evaluation). This work proposes a set of mechanisms to increase the quality of plausible patches including an analysis of test suite behavior and their key characteristics for automatic program repair, analyzing developer behavior to inform the mutation operator selection distribution, and a study of patch diversity as a means to create consolidated higher quality fixes.
Development of the PETAL Laser Facility and its Diagnostic Tools

The PETAL system (PETawatt Aquitaine Laser) is a high-energy short-pulse laser, currently in an advanced construction phase, to be combined with the French Mega-Joule Laser (LMJ). In a first operational phase (beginning in 2015 and 2016) PETAL will provide 1 kJ in 1 ps and will be coupled to the first four LMJ quads. The ultimate performance goal to reach 7PW (3.5 kJ with 0.5 ps pulses). Once in operation, LMJ and PETAL will form a unique facility in Europe for High Energy Density Physics (HEDP). PETAL is aiming at providing secondary sources of particles and radiation to diagnose the HED plasmas generated by the LMJ beams. It also will be used to create HED states by short-pulse heating of matter. Petal+ is an auxiliary project addressed to design and build diagnostics for experiments with PETAL. Within this project, three types of diagnostics are planned: a proton spectrometer, an electronspectrometer and a large-range X-ray spectrometer.
Holographic quenches in a confined phase

We investigate quenches of holographic theories in a confined phase, where the energy injected is insufficient to reach the deconfined phase. In such quenches, thermalization is not associated with gravitational collapse and the formation of a black hole. Nevertheless, we attempt to characterize the late-time state of this scenario. We check a number of notions of thermalization that do not require horizon formation, and find no evidence for thermalization, or even equilibration, for our chosen parameters and initial states. We find that the post-quench behaviour of both local and nonlocal observables exhibit oscillatory behaviour rather than decaying towards equilibrium. We generally find that the response of the nonlocal observables is smoother than that of the local ones. We discuss mechanisms which generate such smoothing, as well as ‘beats’ which appear in the time-dependence of the nonlocal operators for certain classes of quenches. When tuning the quench parameters such that the smoothing is ineffective, we are able to perform ‘entanglement spectroscopy, recovering the spectrum of the confined phase of the theory from the time dependence of the entanglement entropy, as well as other nonlocal observables.
Real-Time Whole Genome Sequencing to Guide Patient-Tailored Therapy of Severe Acute Respiratory Syndrome Coronavirus 2 Infection

Abstract The management of coronavirus disease 2019 has become more complex due to the expansion of available therapies. The presence of severe acute respiratory syndrome coronavirus 2 variants and mutations further complicates treatment due to their differing susceptibilities to therapies. Here we outline the use of real-time whole genome sequencing to detect persistent infection, evaluate for mutations confering resistance to treatments, and guide treatment decisions.
Food-evoked nostalgia

ABSTRACT In three studies, we examined food as an elicitor of nostalgia. Study 1 participants visualised eating either a nostalgic or regularly consumed food. Study 2 participants visualised consuming 12 foods. Study 3 participants consumed 12 flavour samples. Following their food experiences, all participants responded to questions regarding the profile of food-evoked nostalgia (i.e. autobiographical relevance, arousal, familiarity, positive and negative emotions) and several psychological functions (i.e. positive affect, self-esteem, social connectedness, meaning in life). Study 2 and 3 participants also reported their state nostalgia. Results revealed that food is a powerful elicitor of nostalgia. Food-evoked nostalgia has a similar contextual profile to previously examined elicitors, but is a predominantly positive emotional experience. Food-evoked nostalgia served multiple psychological functions and predicted greater state nostalgia.
Critical point phase transition for finite temperature 3-flavor QCD with nonperturbatively O(a) improved Wilson fermions at Nt=10

We study the finite temperature phase structure for three-flavor QCD with a focus on locating the critical point which separates crossover and first order phase transition region in the chiral regime of the Columbia plot. In this study, we employ the Iwasaki gauge action and the non-perturvatively O($a$) improved Wilson-Clover fermion action. We discuss the finite size scaling analysis including the mixing of magnetization-like and energy-like observables. We carry out the continuum extrapolation of the critical point using newly generated data at $N_{\rm t}=8$, $10$ and estimate the upper bound of the critical pseudo-scalar meson mass $m_{\rm PS,E} \lesssim 170 {\rm MeV}$ and the critical temperature $T_{\rm E}=134(3){\rm MeV}$. Our estimate of the upper bound is derived from the existence of the critical point as an edge of the 1st order phase transition while that of the staggered-type fermions is based on its absence.