Miracle-dz/UniFAR-FTUs huggingface dataset:
Design and verification for PCI Express controller

In this paper, we design a PCI Express controller for Endpoint. The controller supports full functionality of transaction layer and data link layer of PCI Express. We also propose an efficient buffer management scheme to obey replay mechanism. We employ 80C51 to effectively manage designed functional blocks and implement real-time OS, MicroC/OS II on 80C5I. We also code software under real time environment. This coded software fully covers the PCI Express protocols; supporting the replay mechanism, checking and generating error message, processing TLP acknowledgment, and management for exchanging flow control. For verification, we build a test bench including functional models of host bridge, local master, local slave, and protocol monitor. We also define the instructions to easily generate situations that it occurs in actual operation. We propose an effective verification to compliance and corner case testing using reference model, random generator, and compare engine. This verification environment is excellent to find error which it not detected by general test vector.
Intracranial Cortical Responses during Visual–Tactile Integration in Humans

Sensory integration of touch and sight is crucial to perceiving and navigating the environment. While recent evidence from other sensory modality combinations suggests that low-level sensory areas integrate multisensory information at early processing stages, little is known about how the brain combines visual and tactile information. We investigated the dynamics of multisensory integration between vision and touch using the high spatial and temporal resolution of intracranial electrocorticography in humans. We present a novel, two-step metric for defining multisensory integration. The first step compares the sum of the unisensory responses to the bimodal response as multisensory responses. The second step eliminates the possibility that double addition of sensory responses could be misinterpreted as interactions. Using these criteria, averaged local field potentials and high-gamma-band power demonstrate a functional processing cascade whereby sensory integration occurs late, both anatomically and temporally, in the temporo–parieto–occipital junction (TPOJ) and dorsolateral prefrontal cortex. Results further suggest two neurophysiologically distinct and temporally separated integration mechanisms in TPOJ, while providing direct evidence for local suppression as a dominant mechanism for synthesizing visual and tactile input. These results tend to support earlier concepts of multisensory integration as relatively late and centered in tertiary multimodal association cortices.
Neural Correlates of Cat Odor-Induced Anxiety in Rats: Region-Specific Effects of the Benzodiazepine Midazolam

Cat odor elicits a profound defensive reaction in rats that is reduced by benzodiazepine drugs. The neural correlates of this phenomenon were investigated here using Fos immunohistochemistry. Rats received either midazolam (0.75 mg/kg, s.c.) or vehicle and were exposed to pieces of a collar that had been worn by a domestic cat or an unworn (dummy) collar. Cat odor caused midazolam-sensitive defensive behavioral responses, including avoidance of collar contact, inhibition of grooming, and prolonged rearing. Cat odor exposure induced Fos expression in the posterior accessory olfactory bulb (glomerular, mitral, and granule cell layers), with granule cell layer activation attenuated by midazolam. High basal Fos expression, and some cat odor-associated Fos expression, was evident in the main olfactory bulb (glomerular cell layer), and midazolam exerted a strong inhibitory effect in this region. Midazolam inhibited Fos expression in key limbic regions involved in pheromone transduction (medial amygdala and bed nucleus of the stria terminalis) and defensive behavior (prelimbic cortex, lateral septum, lateral and medial preoptic areas, and dorsal premammillary nucleus). However, midazolam failed to affect cat odor-related Fos expression in a range of key defense-related sites, including the ventromedial hypothalamic nucleus, paraventricular nucleus of the hypothalamus, periaqueductal gray, and cuneiform nucleus. These results indicate that midazolam exerts a region-specific effect on the neural substrates activated by predator odor, with effects in the lateral septum and dorsal premammillary nucleus likely to be of major importance. These findings also suggest the intriguing hypothesis that cat odor is processed by rats as a “pheromone-like” stimulus.
Providing QoS Guarantee for Real-Time Service in Wireless OFDM Networks with Effective Capacity Method

Most of the QoS guarantee algorithms in wireless OFDM network are confined to a single layer optimization of the network protocol stack, which leads to an inefficient computational performance. In this paper, a novel QoS provision algorithm is proposed. It evolves effective capacity model which captures the effect of channel fading on the queuing behavior of the link, realizing a computationally simple way in QoS provisioning mechanism. Also different scheduling performance varies in such model. Numerical results will show that desired QoS constraints can be explicitly enforced, by utilizing the concept of effective capacity.
Mechanisms, Risk Factors, and Management of Acquired Long QT Syndrome: A Comprehensive Review

Long QT syndrome is characterized by prolongation of the corrected QT (QTc) interval on the surface electrocardiogram and is associated with precipitation of torsade de pointes (TdP), a polymorphic ventricular tachycardia that may cause sudden death. Acquired long QT syndrome describes pathologic excessive prolongation of the QT interval, upon exposure to an environmental stressor, with reversion back to normal following removal of the stressor. The most common environmental stressor in acquired long QT syndrome is drug therapy. Acquired long QT syndrome is an important issue for clinicians and a significant public health problem concerning the large number of drugs with this adverse effect with a potentially fatal outcome, the large number of patients exposed to these drugs, and our inability to predict the risk for a given individual. In this paper, we focus on mechanisms underlying QT prolongation, risk factors for torsades de pointes and describe the short- and long-term treatment of acquired long QT syndrome.
A Test of the Thermal Melanism Hypothesis in the Wingless Grasshopper Phaulacridium vittatum

Abstract Altitudinal clines in melanism are generally assumed to reflect the fitness benefits resulting from thermal differences between colour morphs, yet differences in thermal quality are not always discernible. The intra-specific application of the thermal melanism hypothesis was tested in the wingless grasshopper Phaulacridium vittatum (Sjöstedt) (Orthoptera: Acrididae) first by measuring the thermal properties of the different colour morphs in the laboratory, and second by testing for differences in average reflectance and spectral characteristics of populations along 14 altitudinal gradients. Correlations between reflectance, body size, and climatic variables were also tested to investigate the underlying causes of clines in melanism. Melanism in P. vittatum represents a gradation in colour rather than distinct colour morphs, with reflectance ranging from 2.49 to 5.65%. In unstriped grasshoppers, darker morphs warmed more rapidly than lighter morphs and reached a higher maximum temperature (lower temperature excess). In contrast, significant differences in thermal quality were not found between the colour morphs of striped grasshoppers. In support of the thermal melanism hypothesis, grasshoppers were, on average, darker at higher altitudes, there were differences in the spectral properties of brightness and chroma between high and low altitudes, and temperature variables were significant influences on the average reflectance of female grasshoppers. However, altitudinal gradients do not represent predictable variation in temperature, and the relationship between melanism and altitude was not consistent across all gradients. Grasshoppers generally became darker at altitudes above 800 m a.s. l. , but on several gradients reflectance declined with altitude and then increased at the highest altitude.
Communication, sensemaking and change as a chord of three strands: Practical implications and a research agenda for communicating organizational change

Purpose – The paper aims to propose practical and theoretical consequences of emerging lines of thinking about communication during organizational change.Design/methodology/approach – This conceptual paper suggests several benefits that a sensemaking approach may have in enhancing organizational success in general and the effectiveness of communicating change in particular.Findings – It is suggested that the negative effects of a myopic view on information provision during change distracts from the importance of other communication activities. The fact that changes often fail to meet the expected goals can be partly attributed to the misbalance between information and communication. For practical purposes, it is suggested to stress the importance of energy in organizations and work meaning. Future research could benefit from a focus on framing. Three topics that relate to framing, i.e. conflicts, informal communication, and storytelling are suggested.Practical implications – Suggestions for practice how t.
Cancer becomes wasteful: emerging roles of exosomes† in cell-fate determination

Extracellular vesicles (EVs), including exosomes, have been widely recognized for their role in intercellular communication of the immune response system. In the past few years, significance has been given to exosomes in the induction and modulation of cell-fate-inducing signalling pathways, such as the Hedgehog (Hh), Wnts, Notch, transforming growth factor (TGF-β), epidermal growth factor (EGF) and fibroblast growth factor (FGF) pathways, placing them in the wider context of development and also of cancer. These protein families induce signalling cascades responsible for tissue specification, homeostasis and maintenance. Exosomes contribute to cell-fate signal secretion, and vice versa exosome secretion can be induced by these proteins. Interestingly, exosomes can also transfer their mRNA to host cells or modulate the signalling pathways directly by the removal of downstream effector molecules from the cell. Surprisingly, much of what we know about the function of exosomes in cell determination is gathered from pathological transformed cancer cells and wound healing while data about their biogenesis and biology in normal developing and adult tissue lag behind. In this report, we will summarize some of the published literature and point to current advances and questions in this fast-developing topic. In a brief foray, we will also update and shortly discuss their potential in diagnosis and targeted cancer treatment.
Heparin and heparan sulfate increase the radius of diffusion and action of basic fibroblast growth factor

The radius of diffusion of basic FGF (bFGF) in the presence and in the absence of the glycosaminoglycans heparin and heparan sulfate was measured. Iodinated 125I-bFGF diffuses further in agarose, fibrin, and on a monolayer of bovine aortic endothelial (BAE) cells in the presence of heparin than in its absence. Heparan sulfates affected the diffusion of 125I-bFGF in a manner similar to, though less pronounced than, heparin. When applied at the center of a monolayer of BAE cells, bFGF plus heparin stimulated morphological changes at a 10-fold greater radius than bFGF alone. These results suggest that bFGF-heparin and/or heparan sulfate complexes may be more effective than bFGF alone in stimulating cells located away from the bFGF source because the bFGF- glycosaminoglycan complex partitions into the soluble phase rather than binding to insoluble glycosaminoglycans in the extracellular matrix. Thus, the complex of bFGF and glycosaminoglycan may represent one of the active forms of bFGF in vivo.
Sudden death in the young. Is acute coronary thrombosis the major precipitating factor?

BACKGROUND Atherosclerotic coronary artery disease, complicated by acute thrombosis, is the usual cause of sudden death in adults. This study addresses the pathology of coronary arteries in sudden death in the young (< or = 35 years old). METHODS AND RESULTS Among 200 consecutive cases of sudden death in youth in the Veneto region of Italy, 37 (33 men and 4 women, age 18 to 35 years; mean, 29.4 years) showed obstructive atherosclerotic coronary artery disease in the absence of other cardiac pathological conditions and causes of death. No patient had previous angina pectoris or myocardial infarction. Cardiac arrest occurred at rest in 30 subjects and was related to effort in 7. A histological study was carried out on the obstructive coronary plaques. Degree of lumen stenosis and extension of lipid core and intimal fibrocellular hyperplasia facing the lumen were calculated morphometrically. Immunohistochemistry and electron microscopy were used to further characterize the plaque cell population. Single-vessel disease was found in 33 patients and triple-vessel disease in 4, with an overall total of 45 obstructive plaques, 34 of which were located in the proximal left anterior descending coronary artery. At histological study, only 10 plaques from 10 patients showed acute thrombosis (occlusive in 5 and subocclusive in 5); the remaining 35 were uncomplicated. Thirty-one plaques were fibrous in nature, while the other 14 were atheromatous. Compared with the atheromatous lesions, the fibrous plaques were rarely complicated by thrombosis (3% versus 64%; P < .001) and distinctly exhibited a fairly well-preserved tunica media (81% versus 21%; P < .001) as well as a stratum of neointimal fibrocellular hyperplasia (68% versus 7%; P < .001), which on immunohistochemistry and electron microscopy appeared to be proliferating smooth muscle cells. CONCLUSIONS In our study population, sudden death was precipitated by acute coronary thrombosis in only 27% of patients with obstructive coronary atherosclerotic plaque. Most of the young victims of sudden death with obstructive coronary atherosclerosis showed single-vessel disease that affected the left anterior descending coronary artery and was due to fibrous plaques with neointimal smooth muscle cell hyperplasia and a preserved tunica media in the absence of acute thrombosis.
Reactant minimization during sample preparation on digital microfluidic biochips using skewed mixing trees

Sample preparation is an indispensable process to biochemical reactions. Original reactants are usually diluted to the solutions with desirable concentrations. Since the reactants, like infant's blood, DNA evidence collected from a crime scene, or costly reagents, are extremely valuable, the usage of reactant must be minimized in the sample preparation process. In this paper, we propose the first reactant minimization approach, REMIA, during sample preparation on digital microfluidic biochips (DMFBs). Given a target concentration, REMIA constructs a skewed mixing tree to guide the sample preparation process for reactant minimization. Experimental results demonstrate that REMIA can save about 31%~52% of reactant usage on average compared with three existing sample preparation methods. Besides, REMIA can be extended to tackle the sample preparation problem with multiple target concentrations, and the extended version also successfully decreases the reactant usage further.
Optimal Value Commitment in Bilateral Bargaining 1

We propose a new model to study the role of commitment as a source of strategic bargaining power. Two impatient players bargain about the division of a pie under a standard bargaining protocol in discrete time with time-invariant recognition probabilities. Instantaneous utility is linear, but players discount the future by a constant factor. Before bargaining starts, a player can commit not to enter into any agreement which gives him less than some utility level. This commitment is perfectly binding initially. However, once so much time has passed that even receiving the entire pie would yield less than the committed level of utility, then the commitment becomes void. Intuitively, this simply means that no player can remain committed to something which has become impossible. We use a slight refinement of subgame-perfect equilibrium as a solution concept. If only one player can commit, then we find an immediate and efficient agreement on a division which gives the committed player (strictly) between one half and the entire pie, the exact allocation being determined uniquely by the recognition probabilities. If both players can commit sequentially before the bargaining starts, we find a unique equilibrium division with a first–mover advantage. Finally, we consider a version of the game where both players commit simultaneously before the bargaining starts. In this case, there is a range of equilibrium divisions. However, in the limit as the discount factor goes to one, no player obtains less than one third of the pie, even with arbitrarily small proposal power. Somewhat surprisingly, the equal split emerges as the only division supported by an equilibrium for any choice of the discount factor and the recognition probabilities.
Designing and Cloning Molecular Constructs to Knock Out N-Acetylglucosamine Phosphatidylinositol De-N-Acetylase (GPI12) Gene in Leishmania major (MRHO/IR/75/ER)

Background: Leishmaniasis represents a major public health concern in tropical and sub-tropical countries. At present, there is no efficacious vaccine against the disease and new control methods are needed. One way to access this important goal is to knock out genes of specific macromolecules to evaluate the effect of deletion on the growth, multiplication, pathogenesis and immunity of the parasite. The aim of this study was to design and clone molecular constructs to knock out N-acetylglucosamine phosphatidylinositol de-N-acetylase (GPI12) gene in Leishmania major. Methods: For designing and making molecular constructs, we used pLEXSY-neo2 and pLEXSY-hyg2 vectors. The molecular constructs were cloned in E. coli strain Top10. The molecular constructs were transfected by electroporation into L. major in two stages. Results: The molecular constructs were confirmed by Colony PCR and sequencing. The recombinant strains were isolated by selective antibiotics, after which they were confirmed by PCR, Southern and Western blots. Conclusion: Recombinant parasites were created and examined for subsequent study. With the use of molecular constructs, it was possible to remove and study gene GPI12 and to achieve a live recombinant Leishmania parasite that maintained the original form of the antigenic parasites. This achievement can be used as an experimental model for vaccine development studies. Further investigations are essential to check this model in a suitable host.
Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States.

BACKGROUND Using a novel combination of whole-genome sequencing (WGS) analysis and geographic metadata, we traced the origins of Salmonella Bareilly isolates collected in 2012 during a widespread food-borne outbreak in the United States associated with scraped tuna imported from India. METHODS Using next-generation sequencing, we sequenced the complete genome of 100 Salmonella Bareilly isolates obtained from patients who consumed contaminated product, from natural sources, and from unrelated historically and geographically disparate foods. Pathogen genomes were linked to geography by projecting the phylogeny on a virtual globe and produced a transmission network. RESULTS Phylogenetic analysis of WGS data revealed a common origin for outbreak strains, indicating that patients in Maryland and New York were infected from sources originating at a facility in India. CONCLUSIONS These data represent the first report fully integrating WGS analysis with geographic mapping and a novel use of transmission networks. Results showed that WGS vastly improves our ability to delimit the scope and source of bacterial food-borne contamination events. Furthermore, these findings reinforce the extraordinary utility that WGS brings to global outbreak investigation as a greatly enhanced approach to protecting the human food supply chain as well as public health in general.
Cultivating Uncultured Bacteria from Northern Wetlands: Knowledge Gained and Remaining Gaps

Northern wetlands play a key role in the global carbon budget, particularly in the budgets of the greenhouse gas methane. These ecosystems also determine the hydrology of northern rivers and represent one of the largest reservoirs of fresh water in the Northern Hemisphere. Sphagnum-dominated peat bogs and fens are the most extensive types of northern wetlands. In comparison to many other terrestrial ecosystems, the bacterial diversity in Sphagnum-dominated wetlands remains largely unexplored. As demonstrated by cultivation-independent studies, a large proportion of the indigenous microbial communities in these acidic, cold, nutrient-poor, and water-saturated environments is composed of as-yet-uncultivated bacteria with unknown physiologies. Most of them are slow-growing, oligotrophic microorganisms that are difficult to isolate and to manipulate in the laboratory. Yet, significant breakthroughs in cultivation of these elusive organisms have been made during the last decade. This article describes the major prerequisites for successful cultivation of peat-inhabiting microbes, gives an overview of the currently captured bacterial diversity from northern wetlands and discusses the unique characteristics of the newly discovered organisms.
Optimization to measure performance in the Tailorshop test scenario — structured MINLPs and beyond

Obtaining objective means to measure performance is of crucial importance in the research field Complex Problem Solving. While for traditional tests like the Tower of Hanoi the correct solutions were known, this is more difficult for modern, complex, simulation-based test scenarios, as the Tailorshop. We derive a problem class of nonconvex mixed-integer nonlinear programs (MINLPs) which stem from such economic test scenarios. In a round based scenario participants need to make decisions. A posteriori a performance indicator is calculated and correlated to their ability of emotion regulation. We solve altogether 2088 optimization problems with different size and initial conditions. They are based on real world experimental data from 12 rounds of 174 participants. The goals are twofold: first, from the solutions we gain additional insight into a complex system, which facilitates the analysis of a participant’s performance in the test. Second, we propose a methodology to automatize this process by providing a new criterion based on the solution of a series of optimization problems. We disprove the assumption that the “fruit fly of complex problem solving”, the Tailorshop scenario that has been used for dozens of published studies, is not mathematically accessible. By providing a detailed mathematical description and the computational tool Tobago [12] for an optimization-based analysis we hope to foster further interdisciplinary research between psychologists and applied mathematicians and provide a source for benchmarking of MINLP solvers.