Miracle-dz/UniFAR-FTUs huggingface dataset:
Bayesian Text Categorization

Natural language processing is an interdisciplinary field of research which studies the problems and possibilities of automated generation and understanding of natural human languages. Text categorization is a central subfield of natural language processing. Automatically assigning categories to digital texts has a wide range of applications in todays information societyfrom filtering spam to creating web hierarchies and digital newspaper archives. It is a discipline that lends itself more naturally to machine learning than to knowledge engineering; statistical approaches to text categorization are therefore a promising field of inquiry. We provide a survey of the state of the art in text categorization, presenting the most widespread methods in use, and placing particular emphasis on support vector machinesan optimization algorithm that has emerged as the benchmark method in text categorization in the past ten years. We then turn our attention to Bayesian logistic regression, a fairly new, and largely unstudied method in text categorization. We see how this method has certain similarities to the support vector machine method, but also differs from it in crucial respects. Notably, Bayesian logistic regression provides us with a statistical framework. It can be claimed to be more modular, in the sense that it is more open to modifications and supplementations by other statistical methods; whereas the support vector machine method remains more of a black box. We present results of thorough testing of the BBR toolkit for Bayesian logistic regression on three separate data sets. We demonstrate which of BBRs parameters are of importance; and we show that its results compare favorably to those of the SVMli ght toolkit for support vector machines. We also present two extensions to the BBR toolkit. One attempts to incorporate domain knowledge by way of the prior probability distributions of single words; the other tries to make use of uncategorized documents to boost learning accuracy.
Maternity validation using sire-only BovineSNP50 BeadChip data.

Based on pairwise identity-by-state (IBS) distances and whole-genome SNP data, kinship was investigated in the Israeli Holstein population. A total of 789 bulls, including most of the artificial insemination sires in service since 1987, were genotyped by the BovineSNP50 BeadChip. This sample included up to five generations. For each bull-by-bull combination, three states are possible for each marker: no match, a single match and both alleles match. Summing over all markers, the 932 598 IBS scores (three match frequencies*310 866 bull-by-bull combinations) were visualized using three-dimensional coordinates that corresponded to the frequencies of the three possible states. Results were reduced to two dimensions using the transformations x' = 0.7071(1 + freq1-freq2) and y' = 1.2247freq0. Bull-by-bull pairs were grouped according to their level of kinship, and canonical scores were calculated using discriminant analysis and the x' and y' features. Of the 474 pairs of recorded maternal grandsire-grandson with both individuals genotyped, the probability for 28 pairs to belong to this level of kinship was low (P < 0.05), suggesting an error rate of around 3% per generation in pedigree determination.
Genetic dissection of floridean starch synthesis in the cytosol of the model dinoflagellate Crypthecodinium cohnii

Starch defines an insoluble semicrystalline form of storage polysaccharides restricted to Archaeplastida (red and green algae, land plants, and glaucophytes) and some secondary endosymbiosis derivatives of the latter. While green algae and land-plants store starch in plastids by using an ADP-glucose-based pathway related to that of cyanobacteria, red algae, glaucophytes, cryptophytes, dinoflagellates, and apicomplexa parasites store a similar type of polysaccharide named floridean starch in their cytosol or periplast. These organisms are suspected to store their floridean starch from UDP-glucose in a fashion similar to heterotrophic eukaryotes. However, experimental proof of this suspicion has never been produced. Dinoflagellates define an important group of both photoautotrophic and heterotrophic protists. We now report the selection and characterization of a low starch mutant of the heterotrophic dinoflagellate Crypthecodinium cohnii. We show that the sta1-1 mutation of C. cohnii leads to a modification of the UDP-glucose-specific soluble starch synthase activity that correlates with a decrease in starch content and an alteration of amylopectin structure. These experimental results validate the UDP-glucose-based pathway proposed for floridean starch synthesis.
“Life on Sauerkraut Hill”. Representation and Practices of Freedom and Constriction among German Immigrants in Cape Town, South Africa

In social sciences, intercontinental migration is often seen as a phenomenon of South-North mobility or increasingly as a phenomenon of South-South mobility. In fact, the majority of intercontinental / interregional mobility is taking place between Africa and Asia, as well as between East and South Asia and the Middle East. The migration from the Global South to the North is roughly similar. Both migratory flows are also extensively examined by social anthropologists. Very rare subjects of anthropological research are migrations from the Global North to the Global South. While settlers emigrated from the urban centres and detached rural areas a hundred years ago as emigrants to the colonies of the empires, today it is often individualists who follow this path. It is this latter form of migration that Caterina Reinker dedicates her work to. Reinker examines perspectives and identities of German migrants in Cape Town. These are not migrants who leave their homes without means and / or without perspective. The work, which is based on several months of field work in Cape Town, and which was supervised by Prof. Dr. Michael Bollig, deals with people who emigrate to the South in the search for a fulfilled life (whatever that is to be understood). Some do this with temporary aspirations, some actually emigrate permanently and rule out a return to Germany. However, it seems more likely that options for a return to Germany are retained. None of Reinker’s interviewees had given up their German passport, and for some, the mind game with a possible return is identity forming. Reinker focusses on the design of the vitality of German migrants in a Cape Town district, which is considered to be particularly German and therefore bears the name "Sauerkraut Hill” in the vernacular. Reinker's master thesis provides an important contribution to completing our understanding of global migration. In addition to the large, much-discussed and even more frequently problematized migratory flows, these quantitatively much smaller movements also link the network of global relations.
Hypertriglyceridemia is Frequent in Endometrial Cancer Survivors

Objective Previous studies have reported an association between endometrial cancer and the risk of metabolic syndrome; however, the pattern of endometrial cancer-associated dyslipidemia is not well understood. The standard therapy for endometrial cancer is total abdominal hysterectomy and bilateral salpingo-oophorectomy. Premenopausal bilateral salpingo-oophorectomy may cause adverse events, including dyslipidemia. Gynecologists have to care dyslipidemia in endometrial cancer survivors at cancer follow-up clinic. Methods This study included 693 patients who had undergone bilateral salpingo-oophorectomy, and included 412 women with incident endometrial cancer and 281 controls. We divided the patients into two categories according to whether they had a premenopausal or postmenopausal bilateral oophorectomy. Serum lipid levels were measured and statistically analyzed. Results Hypertriglyceridemia was statistically more frequent in patients who had undergone bilateral salpingo-oophorectomy both before and after menopause than in the corresponding non-endometrial cancer controls. High levels of low-density lipoprotein cholesterol and a high low-density lipoprotein cholesterol/high-density lipoprotein cholesterol ratio were statistically more frequent in patients who had undergone bilateral salpingo-oophorectomy before menopause than in non-endometrial cancer controls. Conclusions Our report highlights the importance of the relationship between endometrial cancer and lipid metabolism, which may aid in preventing cerebrovascular or cardiovascular diseases due to dyslipidemia and improving the quality of life in endometrial cancer survivors.
Cationic Antimicrobial Polymers and Their Assemblies

Cationic compounds are promising candidates for development of antimicrobial agents. Positive charges attached to surfaces, particles, polymers, peptides or bilayers have been used as antimicrobial agents by themselves or in sophisticated formulations. The main positively charged moieties in these natural or synthetic structures are quaternary ammonium groups, resulting in quaternary ammonium compounds (QACs). The advantage of amphiphilic cationic polymers when compared to small amphiphilic molecules is their enhanced microbicidal activity. Besides, many of these polymeric structures also show low toxicity to human cells; a major requirement for biomedical applications. Determination of the specific elements in polymers, which affect their antimicrobial activity, has been previously difficult due to broad molecular weight distributions and random sequences characteristic of radical polymerization. With the advances in polymerization control, selection of well defined polymers and structures are allowing greater insight into their structure-antimicrobial activity relationship. On the other hand, antimicrobial polymers grafted or self-assembled to inert or non inert vehicles can yield hybrid antimicrobial nanostructures or films, which can act as antimicrobials by themselves or deliver bioactive molecules for a variety of applications, such as wound dressing, photodynamic antimicrobial therapy, food packing and preservation and antifouling applications.
Controlling the Rate of GWAS False Discoveries

With the rise of both the number and the complexity of traits of interest, control of the false discovery rate (FDR) in genetic association studies has become an increasingly appealing and accepted target for multiple comparison adjustment. While a number of robust FDR-controlling strategies exist, the nature of this error rate is intimately tied to the precise way in which discoveries are counted, and the performance of FDR-controlling procedures is satisfactory only if there is a one-to-one correspondence between what scientists describe as unique discoveries and the number of rejected hypotheses. The presence of linkage disequilibrium between markers in genome-wide association studies (GWAS) often leads researchers to consider the signal associated to multiple neighboring SNPs as indicating the existence of a single genomic locus with possible influence on the phenotype. This a posteriori aggregation of rejected hypotheses results in inflation of the relevant FDR. We propose a novel approach to FDR control that is based on prescreening to identify the level of resolution of distinct hypotheses. We show how FDR-controlling strategies can be adapted to account for this initial selection both with theoretical results and simulations that mimic the dependence structure to be expected in GWAS. We demonstrate that our approach is versatile and useful when the data are analyzed using both tests based on single markers and multiple regression. We provide an R package that allows practitioners to apply our procedure on standard GWAS format data, and illustrate its performance on lipid traits in the North Finland Birth Cohort 66 cohort study.
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Ten year longitudinal study of efficacy and safety of purified chick embryo cell vaccine for pre- and post-exposure prophylaxis of rabies in Indian population.

One thousand three hundred and seventy-five (1375) persons, who were vaccinated against Rabies with Purified Chick Embryo Cell (PCEC) vaccine from 1984 to 1993, were included in this ten-year longitudinal study, conducted to observe the consistency, immunogenicity, inocuity, safety and efficacy of PCEC vaccine under controlled trial and field conditions. The study period was divided into three phases. Phases I and II covered the premarketing controlled trial and Phase III the post-marketing serosurveillance study of the vaccine. During Phase I, fifteen healthy volunteers were given a pre-exposure regime of vaccine on Day 0, 7 and 21, and the rest 15, simulated post-exposure regime on Day 0, 3, 7, 14, 30 and 90. All the subjects had satisfactory antirabies antibody response with mean titres, of 7.08 and 5.72 I.U. /ml respectively, and minimal side reactions. In the Phase II, from 1984-85, 56 persons with proven rabid animal bites were given post-exposure vaccination and all had satisfactory antibody titres with mean titre of 4.45 I.U. /ml after 6th dose of vaccine and with minimal side reactions. 19 to 36 months follow up after vaccination revealed no vaccine failures. In the Phase III post-marketing field study conducted from 1985 to 1993, 1289 persons reported to our Centre for consulation and antirabies antibody titre estimation following PCEC vaccination. One thousand two hundred and fifty-two (1252) persons took post-exposure vaccination following bites by rabid animals, contact with an hydrophobia patient and 37 high risk personnel took pre-exposure vaccination. (ABSTRACT TRUNCATED AT 250 WORDS)
On the structural properties of eBay's network

The OSN's (On-line Social Networks) have reached an incredible popularity in modern Internet. Those systems have been present in the daily lives of countless people helping them to share personal experiences, expectations and opinions. So high popularity has made of such networks complex systems. To understand the operation and phenomena that occur in such networks, there are metrics and models that capture aspects of their structures. The purpose of this work is to understand the complex reality of eBay e-commerce network, their connections and the dynamics of its users. Data were collected using a Web crawler developed in this work, and it resulted in a database of approximately 87 million transactions and 15 million different dealer users. From these data, the characterization was made estimating network metrics, like dealer users' degree distribution, that gave us key insights about the eBay negotiation network. We found that there are users who bought/sold for more than 100.000 different persons. We also found that a user A interacted over 4.000 times with another user B in just 3 months. Those and other interesting results, such as average distance and feedbacks ratings, were obtained, analyzed and discussed in this work.
A programming environment for real-time control of distributed multiple robotic systems

In recent years there has been great interest in robot software control architectures. However, although many interesting solutions have been presented, most of the research problems tackled related to a single robot perception, navigation and action in everyday environments. Instead, most of the practical applications of mobile robotics for service tasks in civilian environments consist of systems composed of multiple robots communicating with each other, with external sensing and actuating devices, and with external supervising workstations. RoboCup offers a great opportunity to deal with this problem. In fact the software architecture of a robot soccer player must allow successful intra-robot integration of the different activities (visual perception, path planning, strategy planning, motion control, etc.) spanning many different types of representation (raw sensor data, images, symbolic plans, etc.) and it must also guarantee successful inter-robot integration by supporting communication and cooperation. This paper focuses on this problem, presenting ETHNOS-IV - a programming environment for the design of a real-time control system composed of different robots, devices and external supervising or control stations - which has been successfully used within the Italian ART robot team in the RoboCup-99 competition. ETHNOS provides support from three main point of views which will be addressed in detail: inter-robot and intra-robot communication, realtime task scheduling, and software engineering and code reuse. Experimental results illustrating the advantages of this approach will also be presented.
Featured organism: Danio rerio, the zebrafish

The zebrafish has long been a favourite model for the study of vertebrate development. Here we provide an overview of the current state of knowledge and resources for the study of this fish, with comments on the future direction of zebrafish genomics from Professor Mark Fishman and Dr Stephen Wilson. Copyright © 2000 John Wiley & Sons, Ltd.
Generation and Detection of Ultra-Wideband Waveforms Using Stimulated Brillouin Scattering Amplified Spontaneous Emission

A scheme for the photonic generation and coherent detection of ultra-wideband radio-frequency (RF) noise is proposed and demonstrated. The technique relies on the amplified spontaneous emission of a broadened stimulated Brillouin scattering process in an optical fiber (SBS-ASE). The SBS-ASE noise is on-off modulated, and down-converted to the RF spectral range via heterodyne beating. The spectrum of the SBS-ASE is broadened beyond 1 GHz by tailored direct modulation of the pump wave. A data transmitter and a coherent receiver are demonstrated experimentally. Coherent detection of the noise waveform is based on the transmission of a delayed, unmodulated replica alongside the data (transmit reference). A performance analysis of the receiver statistics is provided. Q parameter values of 4.6 at data rates of 4 Mb/s are demonstrated.
Determining Tropical Cyclone Intensity Change through Balanced Vortex Model Applications

The National Hurricane Center tropical cyclone (TC) track predictions have steadily improved due to advancements in guidance. However, gains in intensity forecast skill lag behind track forecast skill. While statistical models, such as the Statistical Hurricane Intensity Prediction Scheme (SHIPS) and the Logistic Growth Equation Model (LGEM), tend to outperform dynamical models, improvements to statistical intensity forecasts have slowed in recent years (Kaplan et al. 2010). For statistical models to continue to gain skill, new methods and improvements to current techniques must be applied.
Modulation spectrum-constrained trajectory training algorithm for GMM-based Voice Conversion

This paper presents a novel training algorithm for Gaussian Mixture Model (GMM)-based Voice Conversion (VC). One of the advantages of GMM-based VC is computationally efficient conversion processing enabling to achieve real-time VC applications. On the other hand, the quality of the converted speech is still significantly worse than that of natural speech. In order to address this problem while preserving the computationally efficient conversion processing, the proposed training method enables 1) to use a consistent optimization criterion between training and conversion and 2) to compensate a Modulation Spectrum (MS) of the converted parameter trajectory as a feature sensitively correlated with over-smoothing effects causing quality degradation of the converted speech. The experimental results demonstrate that the proposed algorithm yields significant improvements in term of both the converted speech quality and the conversion accuracy for speaker individuality compared to the basic training algorithm.
Two Distantly Spaced Basic Patches in the Flexible Domain of Huntingtin-Interacting Protein 1 (HIP1) Are Essential for the Binding of Clathrin Light Chain

The interaction between HIP family proteins (HIP1 and HIP12/1R) and clathrin is fundamental to endocytosis. We used circular dichroism (CD) to study the stability of an HIP1 subfragment (aa468-530) that is splayed open. CD thermal melts show HIP1 468-530 is only stable at low temperatures, but this HIP1 fragment contains a structural unit that does not melt out even at 83°C. We then created HIP1 mutants to probe our hypothesis that a short hydrophobic path in the opened region is the binding site for clathrin light chain. We found that the binding of hub/LCb was sensitive to mutating two distantly separated basic residues (K474 and K494). The basic patches marked by K474 and K494 are conserved in HIP12/1R. The lack of conservation in sla2p (S. cerevisiae), HIP1 from D. melanogaster, and HIP1 homolog ZK370.3 from C. elegans implies the binding of HIP1 and HIP1 homologs to clathrin light chain may be different in these organisms.
Original Paper the Relationship between Vascular Endothelial Growth Factor 1154g/a Polymorphism and Recurrent Implantation Failure

VEGF gene where the GG genotype showed a 2.1-fold increased chance of not being included in the RIF group, while the presence of an A allele increased this risk 1.6-fold. No significant differences were found for the other polymor-phisms. Conclusion: This study showed an association between the VEGF –1154G/A polymorphism and RIF in Brazilian women.
COMPARAÇÃO ENTRE MÉTODOS DE RASTREAMENTO DO PONTO DE MÁXIMA POTÊNCIA PARA SISTEMAS FOTOVOLTAICOS SOB CONDIÇÕES DE SOMBREAMENTO PARCIAL

— Photovoltaic modules require MPPT - Maximum Power Point Tracking - systems for increasing eﬃciency under diﬀerent operating conditions. Shades, usually caused by passing clouds or nearby objects, make diﬃcult to search the real maximum power point because they cause multiple peaks in the P-V curve. This paper investigates the use of GMPPT - Global Maximum Power Point Tracking - techniques for systems under partially shaded conditions. A review of diﬀerent methods is presented, simulations for three diﬀerent shading situations are done and the results show a better eﬃciency of the Fibonacci search method.
Carotid Artery Wall Thickness in Patients With Obstructive Sleep Apnea Syndrome

Background and Purpose— Epidemiological studies have suggested a pathophysiological link between sleep apnea syndrome and cerebrovascular diseases. The mechanism by which sleep disturbance can affect the predisposition to developing stroke is not clear. The aim of this study was to investigate whether patients with obstructive sleep apnea syndrome have an increase in atherosclerosis indicators at the carotid artery level. Methods— We included 23 male patients with severe obstructive sleep apnea syndrome (respiratory disturbance index >30). Intima-media thickness and the presence of steno-occlusive lesions in the common carotid arteries were investigated with B-mode high-resolution ultrasonography. Results of the ultrasonographic examination were compared with those of a group of 23 subjects without obstructive sleep apnea syndrome who were matched for age and comorbid factors. Results— The intima-media thickness of the common carotid arteries of patients with obstructive sleep apnea syndrome was significantly higher (P <0.0001) than that of control subjects (1.429±0.34 versus 0.976±0.17 mm). Conclusions— Results of the present study show that carotid wall thickness is increased in patients with severe sleep apnea syndrome. There is strong evidence that an increase in the thickness of the carotid artery wall is a valid marker of the risk of stroke. For this reason, our finding seems to further strengthen the hypothesis that patients with obstructive sleep apnea syndrome are at risk of developing cerebrovascular diseases regardless of the association with other vascular risk factors.