Miracle-dz/UniFAR-FTUs huggingface dataset:
The relationship between Mycobacterium tuberculosis MGIT time to positivity and cfu in sputum samples demonstrates changing bacterial phenotypes potentially reflecting the impact of chemotherapy on critical sub-populations.

OBJECTIVES The relationship between cfu and Mycobacterial Growth Indicator Tube (MGIT) time to positivity (TTP) is uncertain. We attempted to understand this relationship and create a mathematical model to relate these two methods of determining mycobacterial load. METHODS Sequential bacteriological load data from clinical trials determined by MGIT and cfu were collected and mathematical models derived. All model fittings were conducted in the R statistical software environment (version 3.0.2), using the lm and nls functions. RESULTS TTP showed a negative correlation with log10 cfu on all 14 days of the study. There was an increasing gradient of the regression line and y-intercept as treatment progressed. There was also a trend towards an increasing gradient with higher doses of rifampicin. CONCLUSIONS These data suggest that there is a population of mycobacterial cells that are more numerous when detected in liquid than on solid medium. Increasing doses of rifampicin differentially kill this group of organisms. These findings support the idea that increased doses of rifampicin are more effective.
Proteomic Databases and Software on the Web

In the wake of sequencing projects, protein function analysis is evolving fast, from the careful design of assays that address specific questions to 'large-scale' proteomics technologies that yield proteome-wide maps of protein expression or interaction. As these new technologies depend heavily on information storage, representation and analysis, existing databases and software tools are being adapted, while new resources are emerging. This paper describes the proteomics databases and software available through the World-Wide Web, focusing on their present use and applicability. As the resource situation is highly transitory, trends and probable evolutions are discussed whenever applicable.
Factors contributing to inappropriate ordering of tests in an academic medical department and the effect of an educational feedback strategy

Aims: To identify factors contributing to laboratory overutilisation in an academic medical department, and to assess the effect of an educational feedback strategy on inappropriate test-ordering behaviour. Methods: The records of 426 patients admitted during a 6-month period were reviewed. The usefulness of 25 investigations (haematology, basic biochemistry and arterial blood gases) was assessed according to implicit criteria. Trainees’ acquaintance with investigation costs was assessed via a multiple-choice questionnaire. The medical staff was informed about their test-ordering behaviour, cost awareness and the factors associated with overuse of diagnostic tests. The test-ordering behaviour of the same doctors was reassessed on 214 patients managed during 6 months after the intervention. Results: Overall, 24 482 laboratory tests were ordered before the intervention (mean 2.96 tests/patient/day). Among those, 67.9% were not considered to have contributed towards management of patients (mean avoidable 2.01 tests/patient/day). Patient age ⩾65 years, hospitalisation beyond 7 days and increased case difficulty (death or inability to establish a diagnosis) were factors independently associated with overuse of laboratory tests. Senior trainees ordered more laboratory examinations, but the percentage of avoidable tests requested by junior trainees was higher. A moderate and disparate level of trainees’ awareness about the cost of common laboratory examinations was disclosed. The avoidable tests/patient/day were significantly decreased after the intervention (mean 1.58, p = 0.002), but containment of unnecessary ordering of tests gradually waned during the semester after the intervention. Conclusion: Repeated audit, continuous education and alertness of doctors, on the basis of assessment of factors contributing to laboratory overutilisation, result in restraining the redundant ordering of tests in the hospital setting.
Structural and superconducting properties of La2-xSrxCuO4 as a function of Sr content.

We have studied the structural and superconducting properties of La[sub 2[minus][ital x]]Sr[sub [ital x]]CuO[sub 4] by neutron and x-ray powder diffraction, thermogravimetry, ac susceptibility, and dc magnetization. The kinetics of the synthesis reaction were studied in order to determine the optimum conditions for preparing single-phase samples. The room-temperature and low-temperature structural properties, as determined by neutron powder diffraction, are discussed in detail. By comparing the results of the neutron-diffraction and magnetic measurements, we conclude that superconductivity exists in both the orthorhombic and tetragonal phases. The thermodynamic conditions for the stability of the La[sub 2[minus][ital x]]Sr[sub [ital x]]CuO[sub 4] phase are also investigated.
Utero-ovarian blood flow characteristics of pituitary desensitization.

BACKGROUND Down-regulation in assisted reproduction treatment cycles is monitored by suppression of ovarian/pituitary hormones and/or measurement of endometrial thickness. METHODS This prospective longitudinal study reports on utero-ovarian characteristics of pituitary desensitization. A total of 75 patients were recruited; 32 had IVF treatment, 20 frozen--thawed embryo transfer cycles and 23 patients were recipients of donated oocytes. All received early follicular-phase down-regulation and had colour flow Doppler velocimetry of the utero-ovarian arteries < or =3 days before the start of menses and after 21 days of gonadotrophin-releasing hormone (GnRH) analogue treatment. Ovarian volume, endometrial thickness, pituitary and ovarian hormone concentrations were recorded at each scan. RESULTS Significant changes (P < 0.05) were noted in these and utero-ovarian vasculature during the down-regulation period, with good correlation between resistance index and oestradiol estimations. Neither the type of GnRH analogue nor age influenced the changes in utero-ovarian blood flow. Ovarian artery resistance index was the best Doppler predictor for pituitary suppression and a mean discriminatory cut-off value of 0.867 +/- 0.025 was found to have the highest specificity and positive predictive value. CONCLUSIONS This study has, for the first time, defined cut-off values for satisfactory pituitary suppression with high positive predictive value and specificity in an early follicular phase long protocol of GnRH analogue down-regulation using colour flow Doppler.
Measuring Dynamic and Kinetic Information in the Previously Inaccessible Supra-τc Window of Nanoseconds to Microseconds by Solution NMR Spectroscopy

Nuclear Magnetic Resonance (NMR) spectroscopy is a powerful tool that has enabled experimentalists to characterize molecular dynamics and kinetics spanning a wide range of time-scales from picoseconds to days. This review focuses on addressing the previously inaccessible supra-τc window (defined as τc < supra-τc < 40 μs; in which τc is the overall tumbling time of a molecule) from the perspective of local inter-nuclear vector dynamics extracted from residual dipolar couplings (RDCs) and from the perspective of conformational exchange captured by relaxation dispersion measurements (RD). The goal of the first section is to present a detailed analysis of how to extract protein dynamics encoded in RDCs and how to relate this information to protein functionality within the previously inaccessible supra-τc window. In the second section, the current state of the art for RD is analyzed, as well as the considerable progress toward pushing the sensitivity of RD further into the supra-τc scale by up to a factor of two (motion up to 25 μs). From the data obtained with these techniques and methodology, the importance of the supra-τc scale for protein function and molecular recognition is becoming increasingly clearer as the connection between motion on the supra-τc scale and protein functionality from the experimental side is further strengthened with results from molecular dynamics simulations.
Mobile cloud computing in 5G: Emerging trends, issues, and challenges [Guest Editorial]

Mobile computing, wireless networks, and cloud computing are three technologies that are converging into a rapidly growing field of Mobile Cloud Computing (MCC). With the dramatically increased capacities of the 5th generation (5G) mobile networks, MCC services are expected to witness a period of rapid development and become a new hotspot of mobile services. It is anticipated that people's work patterns and life styles in a future networked society will be dramatically changed by MCC. IBM predicts that there will be 1 trillion cloud-ready devices by 2015, and most Internet users will work primarily through cyberspace-based applications on remote servers accessed through networked devices. Through future applications enabled by 5G, MCC will have profound impacts on almost every aspect of our future digital lives.
Immediate and delayed loading of two‐piece reduced‐diameter implants with locator‐analog attachments in edentulous mandibles: One‐year results from a randomized clinical trial examining clinical outcome and patient expectation

BACKGROUND Prosthetic management of thin alveolar ridges in the edentulous mandibles of elderly patients, especially the time of loading, the number of implants needed, and patient expectations and perception, is a challenge in implant dentistry. PURPOSE Survival of conventionally and immediately loaded 2-piece reduced-diameter implants in the interforaminal region of the edentulous mandible supporting locator-analog attachments was evaluated. Prosthetic complications and peri-implant hygiene were also studied, and patient expectation and subjective evaluation of the treatment were documented. MATERIAL AND METHODS Twenty-five patients with adapted complete dentures received 4 reduced-diameter implants. All anterior implants were immediately loaded. Three months later, patients were allocated by randomization to 1 of 2 treatment groups: 2 locator-analog attachments on the anterior implants (Group A); or 4 locator-analog attachments (Group B). After another 3 months patient allocation was changed (crossover design) for the next 3 months. Questionnaires with Likert scales and numeric rating scales were used to assess patients' expectations and subjective overdenture-related variables, respectively. RESULTS One implant was lost in the immediate-loading group. Survival was 98% and 100% for immediate and delayed loading, respectively. During 12-month observation, 8 complications required aftercare. At the beginning of treatment, patients' expectations were highly positive. Subjective assessment of overdenture-related variables 3 months after immediate loading of 2 implants revealed a statistically significant improvement for most of the variables studied; this was maintained 1 year later. In the subjective assessments, there were no statistically significant differences between Groups A and B. CONCLUSION Immediate loading of reduced-diameter implants supporting locator-analog attachments resulted in high implant survival, few prosthetic complications, good oral hygiene, and improvement of subjective denture perception in the short-term. It might be a promising treatment option, especially for elderly patients with a narrow mandibular ridge.
Childhood Cancer and Parental Occupation in the Swedish Family-Cancer Database

We used the nationwide Swedish Family-Cancer Database to analyze the risk for common childhood tumors in offspring in relation to parental occupation recorded in the census of 1960. A total of 8158 cancer cases, diagnosed before age 15 between years 1958 and 1996, were included. Standardized incidence ratios were calculated using 52 different parental occupations. Among the maternal occupations, seven were associated with the risk of cancer in offspring. Assistant nurses had an excess of children with leukemia and connective tissue and colon cancers. Children of female cooks had brain cancers at a rate greater than expected. Fifteen different malignancies were associated with children of male workers. Shoe and leathers workers’ children had excesses of many tumors. Among the other paternal occupations associated with childhood tumors, miners, quarrymen, and hairdressers were likely to be exposed to harmful dusts and chemicals.
Improving Diagnostic Viewing of Region of Interest in Lung Computed Tomography Image Using Unsharp Masking and Singular Value Decomposition

Computed Tomography (CT) technology has been widely used for detecting and diagnosing lung disease. To improve the visibility of essential features in a CT image, reducing noise and blur, sharpening features, and increasing contrast are necessary. In this study, we propose a method to improve these features and gain better characteristics of region of interest in lung CT images for a right diagnosis. Processing of the proposed method consists of non-local means filter for removing noise, unsharp masking for deblurring and sharpening image, and finally singular value decomposition for enhancing contrast of the region of interest. The method was evaluated in terms of improvement in contrast based on contrast improvement ratio in lung CT images. The results clearly demonstrated that our method reached a higher contrast improvement ratio compared to histogram equalization, unsharp masking, contrast-limited adaptive histogram equalization, and singular value equalization methods and helped to increase the clarity of relevant details without distorting the images.
Handbook of Organizational Measurement . By James L. Price. (Lexington, Mass.: D.C. Heath and Company, 1972. Pp. 210. $7.95.)

of social transformation must be left to the "world spirit," to history, which philosophy alone can decipher, to be sure, but only retrospectively. It is one of Professor Plant's many virtues that he does not feel obliged to exonerate Hegel from complicity in the crimes of our own century. He is mercifully above the childish game of identifying "good" and "bad" guys. He might, however, without resort to this sort of nonsense have asked some political questions about Hegel. Why does he identify freedom with knowledge of necessity and not, as most of us do, with striving for the new ? How does he reconcile personal moral freedom and historical destiny? And finally, while community and rational authority are no doubt serious public values, what is one to make of them in a world that is ineluctably pluralistic ? In spite of these and other questions that one might put to Professor Plant, his Hegel is stimulating and illuminating and deserves a wide readership.
Optimization of switched reluctance motor design procedure for electrical vehicles

This paper deals with optimization process of switched reluctance motor (SRM) during design procedure. This optimization process uses finite element method (FEM) to improve motor performances and properties. On the base of four phase 8/6 SRM analytical design given by known equations and formulas, some improvements and materials utilization are obtained by optimization process. This optimization design procedure is described in details. The static and dynamic parameters and waveforms are calculated and compared for both of motors. The output characteristics as torque and power versus speed are given and compared for electrical vehicle application.
Knowledge Management And Communities Of Practice: An Experience From Rabobank Australia And New Zealand

Knowledge and information transfer have become important ingredients for an organisation's competitive advantage. Knowledge management has emerged as an overarching strategy to enhance knowledge creation, information transfer, utilisation, and reticulation in order to generate innovation and improve organisational performance. Part of this strategy involves the creation of Communities of Practice. These are networks of individuals with a common, shared purpose grouped together to facilitate knowledge building, idea creation and information exchange. The experience establishing Communities of Practice at Rabobank Australia and New Zealand is examined.
Behavioral and Healthcare-Associated Risk Factors for Chronic Hepatitis C Virus Infection in Korea

The risk factors related to hepatitis C virus (HCV) infection showed geographic and temporal differences. We investigated HCV-related risk factors in Korea where intravenous drug use (IVDU) is uncommon. The HCV-related risk factors were investigated in a prospective, multicenter chronic HCV cohort (n = 711) using a standardized questionnaire in four university hospitals. The results were compared with those of 206 patients with chronic liver diseases not related to either of HCV or hepatitis B virus infection (comparison group). The IVDU was found in 3.9% and remote blood transfusion (≥ 20 yr ago) in 18.3% in HCV cohort group, while that in comparison group was in none and 5.3%, respectively. In a multivariate logistic analysis, transfusion in the remote past (odds ratio [OR], 2.99), needle stick injury (OR, 4.72), surgery (OR, 1.89), dental procedures (OR, 2.96), tattooing (OR, 2.07), and multiple sexual partners (2-3 persons; OR, 2.14, ≥ 4 persons; OR, 3.19), were independent risk factors for HCV infection. In conclusion, the major risk factors for HCV infection in Korea are mostly related to conventional or alterative healthcare procedures such as blood transfusion in the remote past, needle stick injury, surgery, dental procedure, and tattooing although multiple sex partners or IVDU plays a minor role.
11 PFLOP/s simulations of cloud cavitation collapse

We present unprecedented, high throughput simulations of cloud cavitation collapse on 1.6 million cores of Sequoia reaching 55% of its nominal peak performance, corresponding to 11 PFLOP/s. The destructive power of cavitation reduces the lifetime of energy critical systems such as internal combustion engines and hydraulic turbines, yet it has been harnessed for water purification and kidney lithotripsy. The present two-phase flow simulations enable the quantitative prediction of cavitation using 13 trillion grid points to resolve the collapse of 15'000 bubbles. We advance by one order of magnitude the current state-of-the-art in terms of time to solution, and by two orders the geometrical complexity of the flow. The software successfully addresses the challenges that hinder the effective solution of complex flows on contemporary supercomputers, such as limited memory bandwidth, I/O bandwidth and storage capacity. The present work redefines the frontier of high performance computing for fluid dynamics simulations.
Light-Field Correction for Spatial Calibration of Optical See-Through Head-Mounted Displays

A critical requirement for AR applications with Optical See-Through Head-Mounted Displays (OST-HMD) is to project 3D information correctly into the current viewpoint of the user - more particularly, according to the user's eye position. Recently-proposed interaction-free calibration methods [16], [17] automatically estimate this projection by tracking the user's eye position, thereby freeing users from tedious manual calibrations. However, the method is still prone to contain systematic calibration errors. Such errors stem from eye-/HMD-related factors and are not represented in the conventional eye-HMD model used for HMD calibration. This paper investigates one of these factors - the fact that optical elements of OST-HMDs distort incoming world-light rays before they reach the eye, just as corrective glasses do. Any OST-HMD requires an optical element to display a virtual screen. Each such optical element has different distortions. Since users see a distorted world through the element, ignoring this distortion degenerates the projection quality. We propose a light-field correction method, based on a machine learning technique, which compensates the world-scene distortion caused by OST-HMD optics. We demonstrate that our method reduces the systematic error and significantly increases the calibration accuracy of the interaction-free calibration.
Porphyrinuria in Korean Children with Autism: Correlation with Oxidative Stress

Autism spectrum disorder (ASD) is a neurodevelopmental disorder believed to be associated with heavy metal exposure, especially mercury (Hg), and is characterized by disturbances in metal elimination. Various studies correlated elevated heavy metal body burden with ASD diagnoses as evidenced by increased urinary porphyrin levels in patients. Urinary porphyrins were also determined in Korean patients diagnosed with ASD (n = 65) who visited AK Eastern Medicinal Clinic in Kangnam-gu, Seoul, from June 2007 to September 2008, compared to controls (n = 9) residing in the same area, by means of Metametrix (CLIA-approved) laboratory testing. Further, urinary organic acids as indicators of hepatic detoxification/oxidative stress were also analyzed among patients diagnosed with ASD. Significant increases were found in patients diagnosed with ASD for proporphyrins, pentacarboxyporphyrin, precoproporphyrin, coproporphyrins, and total porphyrins. Significant correlations were observed between hepatic detoxification/oxidative stress markers and urinary porphyrins. In agreement with published data, the present results demonstrated that measurement of porphyrins serves as a reliable tool for diagnosis of heavy metal involvement in ASD.
New oral anticoagulants in the treatment of acute venous thromboembolism - a systematic review with indirect comparisons.

BACKGROUND For decades, heparins and vitamin K antagonists (VKAs) have been the gold standards in therapy of venous thromboembolism (VTE). The advent of factor IIa and Xa inhibitors provides new therapeutic options. The aim of this analysis is to compare the currently available new oral anticoagulants (NOACs) with VKAs and also indirectly the NOACs with each other, as it is unlikely that a head-to-head comparison will ever be available. PATIENTS AND METHODS In total, 27,024 patients were included in the RE-COVER, RE-COVER II, EINSTEIN DVT and PE, AMPLIFY and HOKUSAI studies with 13,511 in the VKA arm and 13,513 in the NOAC arm. Efficacy and safety endpoints were assessed by relative risks (RR) and absolute risk reductions (ARR) relative to VKA. The indirect comparison between the NOACs was performed according to ISPOR guidelines. RESULTS No differences between NOACs and VKA were found regarding recurrent VTE and death. Bleeding was significantly reduced by NOACs: major bleeding by rivaroxaban (RR 0.55; 0.38 - 0.81) and apixaban (RR 0.31; 0.17 - 0.55); major and clinically relevant non-major bleeding by dabigatran (RR 0.63; 0.51 - 0.77), apixaban (RR 0.44; 0.36 - 0.55) and edoxaban (RR 0.81; 0.71 - 0.93). The ARR for major bleeding was 1 % for rivaroxaban and apixaban; and for the composite bleeding endpoint 3.2 % for dabigatran, 5.4 % for apixaban, and 1.9 % for edoxaban. Regarding efficacy, no differences were found between NOACs. Apixaban reduced incidence of major bleeding more than dabigatran and edoxaban. Regarding occurrence of the composite bleeding endpoint, apixaban performed better than all other NOACs and dabigatran better than rivaroxaban and edoxaban. CONCLUSIONS NOACs are as efficient in the treatment of VTE as VKA but with reduced risk of bleeding complications. Indirect comparisons indicate differences in the risk of clinically relevant bleeding events. Important issues such as monitoring and reversal of anticoagulation are still unresolved, but introduction of NOACs increased the therapeutic spectrum and thereby the potential for individualized therapy.