Miracle-dz/UniFAR-FTUs huggingface dataset:
Infrared Thermography Imaging for Assessment of Peripheral Perfusion in Patients with Septic Shock

Skin temperature changes can be used to assess peripheral perfusion in circulatory shock patients. However, research has been limited to point measurements from acral parts of the body. Infrared thermography allows non-invasive evaluation of temperature distribution over a larger surface. Our study aimed to map thermographic patterns in the knee and upper thigh of 81 septic shock patients within 24 h of admission and determine the relationship between skin temperature patterns, mottling, and 28-day mortality. We extracted skin temperature measurements from zones corresponding to mottling scores and used a linear mixed model to analyze the distribution of skin temperature in patients with different mottling scores. Our results showed that the distribution of skin temperature in the anterior thigh and knee is physiologically heterogeneous and has no significant association with mottling or survival at 28 days. However, overall skin temperature of the anterior thigh and knee is significantly lower in non-survivors when modified by mottling score. No differences were found in skin temperature between the survivor and non-survivor groups. Our study shows the potential usefulness of infrared thermography in evaluating skin temperature patterns in resuscitated septic shock patients. Overall skin temperature of the anterior thigh and knee may be an important indicator of survival status when modified by mottling score.
Assessment of Spatial Variations in Pesticide, Heavy Metal, and Selenium Residues in Honey Bee (Apis mellifera L.) Products

Apis mellifera L. is considered one of the most important pollinators in nature. Unfortunately, in addition to other insect species, honey bee populations are decreasing at an alarming rate, urging researchers to investigate the causes and stressors that precipitated this decline. This study focuses on chemical stressors that are found to affect bee populations. We used pollen and honey samples to examine the variations in pesticides, selenium, and heavy metals in two different landscapes: urban and agricultural areas of northeastern Colorado, USA. Subsequently, we extrapolated the risks of these toxins’ residues to Apis spp. Based on the current literature, we found no spatial variations in metal and selenium concentrations in the pollen and honey samples collected from urban and agricultural areas. Moreover, we observed no spatial variations in pesticide concentrations in pollen and honey samples. Based on the previous literature and a comparison of the residues of heavy metals, selenium, and pesticides in our pollen and honey samples, we found that the heavy metal and selenium residues in some honey and pollen likely pose a severe health risk to honey bees. Although the levels of pesticide residues were below the documented thresholds of risk, we consider the possibility of synergistic chemical impacts. Our findings support future efforts to investigate the health risks associated with multiple-factor combinations.
Tomato Plant Microbiota under Conventional and Organic Fertilization Regimes in a Soilless Culture System

Tomato is the main vegetable cultivated under soilless culture systems (SCSs); production of organic tomato under SCSs has increased due to consumer demands for healthier and environmentally friendly vegetables. However, organic tomato production under SCSs has been associated with low crop performance and fruit quality defects. These agricultural deficiencies could be linked to alterations in tomato plant microbiota; nonetheless, this issue has not been sufficiently addressed. Thus, the main goal of the present study was to characterize the rhizosphere and phyllosphere of tomato plants cultivated under conventional and organic SCSs. To accomplish this goal, tomato plants grown in commercial greenhouses under conventional or organic SCSs were tested at 8, 26, and 44 weeks after seedling transplantation. Substrate (n = 24), root (n = 24), and fruit (n = 24) composite samples were subjected to DNA extraction and high-throughput 16S rRNA gene sequencing. The present study revealed that the tomato core microbiota was predominantly constituted by Proteobacteria, Actinobacteria, and Firmicutes. Remarkably, six bacterial families, Bacillaceae, Microbacteriaceae, Nocardioidaceae, Pseudomonadaceae, Rhodobacteraceae, and Sphingomonadaceae, were shared among all substrate, rhizosphere, and fruit samples. Importantly, it was shown that plants under organic SCSs undergo a dysbiosis characterized by significant changes in the relative abundance of Bradyrhizobiaceae, Caulobacteraceae, Chitinophagaceae, Enterobacteriaceae, Erythrobacteraceae, Flavobacteriaceae, Nocardioidaceae, Rhodobacteraceae, and Streptomycetaceae. These results suggest that microbial alterations in substrates, roots, and fruits could be potential factors in contributing to the crop performance and fruit quality deficiencies observed in organic SCSs.
Host Range Expansion of Nest-Parasitic Moths Pyralis regalis and Hypsopygia mauritialis in Social Wasp Nests: New Findings and Implications for Biological Control

Parasitic moths are common in social wasp (Hymenoptera) nests, attacking many species of Polistinae and a few species of Vespinae. In the Republic of Korea, two moth species are known to parasitize the brood of Polistes rothneyi koreanus: Pyralis regalis (Pyralidae) and Anatrachyntis japonica (Cosmopterigidae). Although previously reported elsewhere, a novel case of parasitization was recently documented in the Republic of Korea, in which Hypsopygia mauritialis (Pyralidae) was identified in the nests of social wasps. Pyralis regalis is the most common parasitic moth in the Republic of Korea, feeding on the nests of 11 species of social wasps, mostly the Korean Vespa species. To that list of hosts, we add a species of Dolichovespula and two species of Polistes. Parasitism of Vespa velutina nigrithorax, an invasive alien hornet, by both P. regalis and H. mauritialis, was observed for the first time. However, their potential to control invasive alien hornets is expected to be low. This study provides new insights into the diversity of nest-parasitic moths in social wasp nests and their hosts in the Republic of Korea, and highlights the potential for these moths to impact pest populations.
Enhancer Function in the 3D Genome

In this review, we consider various aspects of enhancer functioning in the context of the 3D genome. Particular attention is paid to the mechanisms of enhancer-promoter communication and the significance of the spatial juxtaposition of enhancers and promoters in 3D nuclear space. A model of an activator chromatin compartment is substantiated, which provides the possibility of transferring activating factors from an enhancer to a promoter without establishing direct contact between these elements. The mechanisms of selective activation of individual promoters or promoter classes by enhancers are also discussed.
Animal Research in Spain: A Study of Public Perception and Attitudes

Simple Summary Although animals are extensively used in experimentation for diverse purposes, ethical concerns have led to reluctance among a certain sector of the population. To find out the opinions of the Spanish population regarding animal research, we conducted a survey, obtaining responses from more than 800 people. While the majority were in favor, some groups were more prone to be against animal experimentation. In addition, we observed that people’s opinions could be altered by reading media reports. We also observed that people did not know about the handling of animals or laws concerning animal testing. Furthermore, we found that people were against the use of animals for non-medical purposes. In general, the survey showed the variety of people’s opinions and their concern for animal welfare. Abstract Since the time of Hippocrates in the 4th century BC, animal research has been extensively used for various purposes up to the present day. However, the use of animals for research has also been controversial for a long time. We report the findings of a public, online questionnaire-based survey designed to assess the opinions of a sample of Spanish society regarding animal research. Demographic data and opinions were obtained from 806 respondents. The results indicated a high level of acceptance of animal research (73.1%). However, certain factors, such as completing the questionnaire immediately after a reading negative media report (OR = 2.41; 95%CI: 1.64–3.54; p < 0.001), being a woman (OR = 1.77; 95%CI: 1.24–2.53; p = 0.002) or having a non-scientific background (OR = 2.47; 95%CI: 1.76–3.47; p < 0.001), were associated with a tendency towards a more negative opinion. The opinions seemed to be influenced by gender, education level and by protest incidents reported in the media. Our results also indicate that a lot of information regarding animal welfare, such as care and handling protocols, along with legislation was unknown to individuals. Further, a growing popularity of companion species and opposition to animal experimentation for non-biomedical purposes were reflected in the responses obtained. The use of animals for research purposes emerged as a sensitive social issue in terms of concerns about animal ethics and welfare.
Effect of Potassium Permanganate, Ultraviolet Radiation and Titanium Oxide as Ethylene Scavengers on Preservation of Postharvest Quality and Sensory Attributes of Broccoli Stored with Tomatoes

This study introduces an effective solution to enhance the postharvest preservation of broccoli, a vegetable highly sensitive to ethylene, a hormone produced by climacteric fruits such as tomatoes. The proposed method involves a triple combination of ethylene elimination techniques: potassium permanganate (KMnO4) filters combined with ultraviolet radiation (UV-C) and titanium oxide (TiO2), along with a continuous airflow to facilitate contact between ethylene and these oxidizing agents. The effectiveness of this approach was evaluated using various analytical techniques, including measurements of weight, soluble solids content, total acidity, maturity index, color, chlorophyll, total phenolic compounds, and sensory analysis conducted by experts. The results demonstrated a significant improvement in the physicochemical quality of postharvest broccoli when treated with the complete system. Notably, broccoli subjected to this innovative method exhibited enhanced organoleptic quality, with heightened flavors and aromas associated with fresh green produce. The implementation of this novel technique holds great potential for the food industry as it reduces postharvest losses, extends the shelf life of broccoli, and ultimately enhances product quality while minimizing waste. The successful development and implementation of this new technique can significantly improve the sustainability of the food industry while ensuring the provision of high-quality food to consumers.
Risk Prediction and Calibration with Weak Supervision using the Electronic Health Record

Electronic health records (EHRs) promise unprecedented opportunities for in silico clinical and transla­ tional discovery ranging from disease risk prediction to survival analysis. However, the scarcity of reliable labels for many phenotypes has hampered efforts to effectively harness the EHR for these objectives. Many studies circumvent this problem via either chart review or rule­based electronic phenotyping, both of which necessitate significant expert labor. This problem is exacerbated when interest lies in phenotype event times – perhaps to evaluate the effect of a treatment decision on time to relapse. In this case, chart review involves reviewing potentially hundreds of notes over the course of a patient’s record. Moreover, devising rules to ascertain the time of an event is far more complicated than determining the presence of a binary phenotype. When chart review and rule­based phenotyping are infeasible, studies often utilize billing codes such as In­ ternational Classification of Diseases (ICD) codes as surrogates for true phenotype labels. However, many diseases tend to have imprecise codes that can bias or de­power the downstream study. Even when codes are reliable disease proxies, they often exhibit systematic temporal biases that hinder their use as event time surrogates. Thus, there is an ongoing need for reliable algorithms that can both identify the presence of a phenotype and estimate its temporal course using limited supervision. In chapter 1, we introduce surrogate­guided ensemble LDA (sureLDA), a weakly supervised phenotyp­ ing method that predicts binary patient­level phenotypes from EHR data without using any manual ”gold­ standard” labels. It accomplishes this by initializing priors for the target phenotypes using phenotype surro­ gate features, and then using these priors to guide the unsupervised topic modeling method Latent Dirichlet
Design of High-performance Parallel-connected Filters Using Chained Filtering Functions

This paper presents a design of high-performance parallel-connected filters using Chained filtering function. The filtering functions enable the placement of multiple return loss zeros at the same frequency, resulting in reduced sensitivity to fabrication tolerance and design complexity compared to traditional Chebyshev counterparts. To demonstrate the feasibility of this technique, a new filtering function (FN ) based on Chained filtering function is derived, and prototypes of fourth and sixth-degree Chained function filters in a parallel-connected topology are designed and fabricated. The overall size of the filters is 2.5 cm×4 cm (fourth degree) and 2.5 cm×5 cm (sixth degree). The measured insertion and return losses are 2.833 dB and 16.150 dB (fourth degree), and 2.674 dB and 18.074 dB (sixth degree). The achievable selectivity of the filters is 78.17 (fourth degree) and 89.68 (sixth degree). This design technique can serve as a useful tool for filter design engineers in terms of implementation.
Object location technique for binocular stereo vision based on scale invariant feature transform feature points

An object location method was developed based on scale invariant feature transform(SIFT) feature points that is useful for digital image based binocular stereo vision.First,the SIFT feature vector was introduced,as it has good robustness to changes such as scaling,rotation and visual angles.By the use of SIFT feature vector matching,objects which had been collected by a binocular stereo vision system were detected in both left and right images,and thus suitable SIFT feature points were found.Then,by choosing matching points,computing the calibrated point's coordinates,and so on,the calibration points of the object could be determined.These calibration points describe the same spatial locations of objects in the left and right images.Finally,the three-dimensional coordinates of the calibration points were rebuilt in the camera's coordinate system.The results show that the method discussed has good robustness and practicability.
Cutaneous Squamous Cell Carcinoma: An Up-to-Date Comprehensive Review with a Focus on Contemporary Optical Imaging Diagnostic Modalities

Cutaneous squamous cell carcinoma (cSCC) arises from the abnormal proliferation of keratinocytes of the epidermis, most commonly due to UV-light-induced DNA damage. Although histopathological assessment is the gold standard for diagnosing cSCC, nascent optical imaging diagnostic modalities enable clinicians to perform “optical or virtual biopsy” in real-time. We aim to report advances in optical imaging diagnostics for cSCC, along with an updated review of the literature. A comprehensive literature review was performed using PubMed, Embase, and Cochrane databases for manuscripts published from 2008 to 2022. The search yielded a total of 9581 articles, out of which 136 relevant articles were included in the literature review after fulfilling screening and eligibility criteria. This review highlights the current optical imaging devices used for diagnosing cSCC and their diagnostic features. These devices include in vivo and ex vivo reflectance confocal microscopy, optical coherence tomography, line-field confocal optical coherence tomography, multiphoton tomography, and high-frequency ultrasonography. Although surgical excision or Mohs micrographic surgery is considered the gold standard, the latest developments in nonsurgical management of cSCC are discussed. Based on he review of the literature, we conclude that contemporary optical imaging devices such as confocal microscopy, optical coherence tomography, line-field confocal optical coherence tomography and multiphoton tomography have revolutionized real-time diagnostic imaging in dermatology, particularly within the realm of skin cancer. These devices enable rapid diagnoses and allow for a faster initiation of therapy. The application of newer imaging devices to cSCC management may benefit high-risk patients (e.g., chronic UV radiation exposure or organ transplant recipients) or patients with multifocal cSCC, for whom multiple biopsies would be impractical, thus avoiding unnecessary biopsies. Together with dermoscopy, optical imaging technologies can help to improve the efficiency of diagnosis by reducing the turnaround time and the need for extensive laboratory processing resources.
The Subjunctive as a Model of Grammatical Complexity: An Integrative Review of Issues Based on Combined Evidence from Mental Chronometry and Neurosciences

The acquisition of a second language requires the construction or reconstruction of linguistic knowledge about the new language system. Learners of a second language have to acquire the linguistic structures of the second language by constructing or reassessing their own knowledge in the light of the new one. Some of these new linguistic structures may be more or less complex to process and/or difficult to acquire. In this review, we focus on an example of linguistic complexity in French, namely, the subjunctive. Through a discussion of some selected studies on the second language acquisition of the French subjunctive, our purpose is to argue that these findings, considered from a psycholinguistic perspective, could be fruitful for further research employing neuroscience techniques, such as electroencephalography or neuroimaging in order to better understand the neurocognitive processing of this complex structure both in French native speakers and in learners of French. Hence, we aim to contribute to exploring the question of linguistic transfer in the field of second language acquisition, the typological distance/relation between L1–L2, the syntactic acquisition of complex structures in adult second language learners, and the potential contributions of electroencephalography and functional magnetic resonance imaging to the processing of the subjunctive, selected as an example of linguistic complexity that has not yet received much attention.
Protein Extraction, Precipitation, and Recovery from Chlorella sorokiniana Using Mechanochemical Methods

Protein extraction, precipitation, and recovery methods were evaluated by this study using a green alga—Chlorella sorokiniana. A mechanochemical cell disruption process was applied to facilitate protein extraction from microalgal biomass. Optimization of the mechanochemical process resulted in milling conditions that achieved a protein extraction of 52.7 ± 6.45%. The consequent acid precipitation method was optimized to recover 98.7% of proteins from the microalgal slurry. The measured protein content of the protein isolate was 41.4% w/w. These results indicate that the precipitation method is successful at recovering the extracted proteins in the algal slurry; however, the removal of non-protein solids during centrifugation and pH adjustment is not complete. The energy balance analysis elucidated that the energy demand of the protein extraction and recovery operation, at 0.83 MJ/kg dry algal biomass, is much lower than previous studies using high-pressure homogenization and membrane filtration. This study concludes that mechanochemical protein extraction and recovery is an effective, low-energy processing method, which could be used by algal biorefineries to prepare algal proteins for value-added chemical production as well as to make algal carbohydrates and lipids in the residual biomass more accessible for biofuel production.
Pancreatectomy and Pancreatic Surgery

Pancreatectomy, including pancreaticoduodenectomy (PD), as well as central pancreatectomy (CP), distal pancreatectomy (DP) and total/subtotal pancreatectomy, is a major, complex and difficult surgical procedure performed for various benign and malignant pancreatic diseases: from chronic pancreatitis, through benign cystic tumors and neuroendocrine neoplasms to malignant neoplasms, including pancreatic ductal adenocarcinoma (PDAC) [. ].
New Insights into the Enhancement Effect of Exogenous Calcium on Biochar Stability during Its Aging in Farmland Soil

Converting biowaste into biochar and incorporating it into soil is recognized as an effective method for carbon (C) sequestration. However, biochar inevitably undergoes an aging process in soil, which influences its stability, and ultimately threatens its carbon sequestration ability. This study selected CaCl2 as an exogenous additive of sewage sludge and bone dreg for producing Ca-rich biochars, and both surface C and bulk C stability in them were investigated under three aging processes (dry–wet aging, freeze–thaw aging, and natural aging in farmland soil). The results showed that the above three aging processes resulted in oxidized surface C in Ca-rich biochar decreasing by 10~23%, 28~41%, and 0~74%, respectively, compared with that in pristine biochar, while oxidized bulk C decreased by 6~10%, 0~1%, and 0~35%, respectively. This was attributed to the “protective effect” of Ca-containing crystals on the biochar surface, including CaO, Ca5(PO4)3Cl, Ca5(PO4)3(OH), Ca8H2(PO4)6·H2O, and Ca10(PO4)6(OH)2, which intervened in the oxidation of C–C/C=C in biochar but also reduced the generation of a fragmented C structure. By comprehensively assessing surface C and bulk C stability under three aging processes, final C sequestration in Ca-rich biochar increased to 27~80%, compared to that in pristine biochar (23~74%). Therefore, Ca-rich biochar is more dominant than pristine biochar, considering C sequestration potential during long-term aging in soil.
Induction of Senescence by Loss of Gata4 in Cardiac Fibroblasts

Cardiac fibroblasts are a major source of cardiac fibrosis during heart repair processes in various heart diseases. Although it has been shown that cardiac fibroblasts become senescent in response to heart injury, it is unknown how the senescence of cardiac fibroblasts is regulated in vivo. Gata4, a cardiogenic transcription factor essential for heart development, is also expressed in cardiac fibroblasts. However, it remains elusive about the role of Gata4 in cardiac fibroblasts. To define the role of Gata4 in cardiac fibroblasts, we generated cardiac fibroblast-specific Gata4 knockout mice by cross-breeding Tcf21-MerCreMer mice with Gata4fl/fl mice. Using this mouse model, we could genetically ablate Gata4 in Tcf21 positive cardiac fibroblasts in an inducible manner upon tamoxifen administration. We found that cardiac fibroblast-specific deletion of Gata4 spontaneously induces senescence in cardiac fibroblasts in vivo and in vitro. We also found that Gata4 expression in both cardiomyocytes and non-myocytes significantly decreases in the aged heart. Interestingly, when αMHC-MerCreMer mice were bred with Gata4fl/fl mice to generate cardiomyocyte-specific Gata4 knockout mice, no senescent cells were detected in the hearts. Taken together, our results demonstrate that Gata4 deficiency in cardiac fibroblasts activates a program of cellular senescence, suggesting a novel molecular mechanism of cardiac fibroblast senescence.