Miracle-dz/UniFAR-FTUs huggingface dataset:
Probiotic Treatment Using Bifidobacterium lactis HN019 Reduces Weanling Diarrhea Associated With Rotavirus and Escherichia coli Infection in a Piglet Model

Background Diarrhea associated with rotavirus and Escherichia coli is one of the major gastrointestinal problems faced by human infants. Using a piglet model, the authors investigated the protective effectiveness of probiotic feeding against naturally acquired diarrhea in weanlings. Methods Seventeen piglets were allocated into two groups balanced for live weight and litter of origin. The test group was administered Bifidobacterium lactis HN019 (109 colony-forming units (cfu)/piglet/d) orally until the end of the experiment; the control group did not receive probiotic treatment. After 1 week, animals were penned individually and weaned onto a diet for a weaner. The degree of subsequent diarrheal disease was monitored in both groups of animals, feed intake and live weight gain of the piglets were assessed, and blood and fecal samples were collected to measure concurrent systemic and gastrointestinal tract immunologic activity. Results Compared with the controls, piglets that received B. lactis HN019 had a lower severity of weanling diarrhea and maintained a greater feed conversion efficiency during weaning. The protective effect of probiotic feeding was associated with lower concentrations of fecal rotavirus and E. coli, higher blood leukocyte phagocytic and T-lymphocyte proliferative responses, and higher gastrointestinal tract pathogen-specific antibody titers. Conclusions These results show that dietary treatment using B. lactis HN019 can reduce the severity of weanling diarrhea associated with rotavirus and E. coli, possibly via a mechanism of enhanced immune-mediated protection. This study suggests that probiotic treatment may be an effective dietary means of preventing or limiting diarrhea in human infants.
Asymmetric Cloud‐Shortwave Radiation‐Sea Surface Temperature Feedback of Ningaloo Niño/Niña

Using observational and reanalysis data, the cloud‐shortwave radiation‐sea surface temperature (SST) feedback in the Ningaloo Niño/Niña region off the west coast of Australia is examined. It is found that this feedback operates as a negative feedback for positive SST anomalies and as a positive feedback for negative SST anomalies. This asymmetry is due to variation in the dominant cloud amount with SST. For positive SST anomalies, a decrease in the shortwave radiation resulting from an increase in high cloud amount associated with deep convection prevails, because SSTs in this region are relatively high compared to other eastern boundary regions and close to the convective threshold. Conversely, the region is under the influence of the subtropical high, and a decrease in the surface shortwave radiation associated with an increase in low cloud amount is dominant for negative SST anomalies.
Lesbian and Bisexual Female Youths Aged 14 to 21: Developmental Challenges and Victimization Experiences

SUMMARY Two hundred six lesbian and bisexual female youth aged 14 to 21 were sampled from social and recreational settings. Most were aware of their same-sex attractions in adolescence, but disclosure to others lagged by five years. Youth on average spent 30% of their lives aware of their orientation without disclosure to others. According to youths' reports, three-quarters of their mothers and half of their fathers knew of their sexual orientation. Half had experienced repetitive verbal abuse, 12% reported several threats, and 7% had been assaulted multiple times. Youths who had self-identified as lesbian or bisexual or had told others of their sexual orientation reported more lifetime sexual orientation victimization. Fewer mental health symptoms were associated with having support from parents and with having not lost friends due to their sexual orientation. Less past sexual orientation victimization and fewer fears about future attacks were significant predictors of having less mental health symptoms. To decrease the victimization young lesbians and bisexual females experience, efforts need to be made to help families become more supportive and to make schools safer.
Medical outcome of pregnancy in women with psychotic disorders and their infants in the first year after birth.

BACKGROUND There has been little research into the health of infants of women with psychotic disorders. AIMS To investigate the antenatal care of mothers with a history of psychotic disorders, obstetric outcomes and the subsequent health of their babies. METHOD A matched, controlled cohort study was carried out using the General Practice Research Database. Women with a history of a psychotic disorder, who gave birth in 1996-1998, were compared with women matched for age and general practice (199 cases and 787 controls) and their infants. RESULTS Cases had a higher proportion of stillbirths (OR=4.03, 95% CI 1.14-4.25, P=0.03) and neonatal deaths (P<0.001). There was no difference in gestational age at antenatal booking. Mothers with psychotic disorders were less likely than controls to attend for infant immunisations 90-270 days after birth (RR=0.94, 95% CI 0.88-0.99, P=0.03). There was no significant difference in the rates of accidents and hospital contacts for infants. CONCLUSIONS There is an increased risk of stillbirth and neonatal death in women with a history of psychotic disorder, and it is therefore important for health care professionals to focus on optimal obstetric care. The physical health of babies who live with mothers with psychotic disorders is not significantly different from that of matched baby controls.
Flow sensing by pinniped whiskers

Beside their haptic function, vibrissae of harbour seals (Phocidae) and California sea lions (Otariidae) both represent highly sensitive hydrodynamic receptor systems, although their vibrissal hair shafts differ considerably in structure. To quantify the sensory performance of both hair types, isolated single whiskers were used to measure vortex shedding frequencies produced in the wake of a cylinder immersed in a rotational flow tank. These measurements revealed that both whisker types were able to detect the vortex shedding frequency but differed considerably with respect to the signal-to-noise ratio (SNR). While the signal detected by sea lion whiskers was substantially corrupted by noise, harbour seal whiskers showed a higher SNR with largely reduced noise. However, further analysis revealed that in sea lion whiskers, each noise signal contained a dominant frequency suggested to function as a characteristic carrier signal. While in harbour seal whiskers the unique surface structure explains its high sensitivity, this more or less steady fundamental frequency might represent the mechanism underlying hydrodynamic reception in the fast swimming sea lion by being modulated in response to hydrodynamic stimuli impinging on the hair.
Single-sided objective speech intelligibility assessment based on Sparse signal representation

Transcription of speech signals, originating from a lawful interception, is particularly important in the forensic phonetics framework. These signals are often degraded and the transcript may not replicate what was actually pronounced. In the absence of the clean signal, the only way to estimate the level of accuracy that can be obtained in the transcription is to develop an objective methodology for intelligibility measurements. In this paper a method based on the Normalized Spectrum Envelope (NSE) and Sparse Non-negative Matrix Factorization (SNMF) is proposed to evaluate the signal intelligibility. The approaches are tested with three different noise types and the results are compared with the speech intelligibility scores measured by subjective tests. The results of the experiments show a high correlation between objective measurements and subjective evaluations. Therefore, the proposed methodology can be successfully used in order to establish whether a given intercepted signal can be transcribed with sufficient reliability.
Disease Risk Perception and Safety Practices: A Survey of Australian Flying Fox Rehabilitators

Interactions with flying foxes pose disease transmission risks to volunteer rehabilitators (carers) who treat injured, ill, and orphaned bats. In particular, Australian bat lyssavirus (ABLV) can be transmitted directly from flying foxes to humans in Australia. Personal protective equipment (PPE) and rabies vaccination can be used to protect against lyssavirus infection. During May and June 2014, active Australian flying fox carers participated in an online survey (SOAR: Survey Of Australian flying fox Rehabilitators) designed to gather demographic data, assess perceptions of disease risk, and explore safety practices. Responses to open-ended questions were analysed thematically. A logistic regression was performed to assess whether rehabilitators’ gender, use of PPE, threat perception, and years of experience predicted variation in their odds of being bitten or scratched. Eligible responses were received from 122 rehabilitators located predominantly on the eastern coast of Australia. Eighty-four percent of respondents were female. Years of experience ranged from <1 to 30 years (median 5 years). Respondents were highly educated. All rehabilitators were vaccinated against rabies and 94% received a rabies titre check at least every two years. Sixty-three percent of carers did not perceive viruses in flying foxes as a potential threat to their health, yet 74% of carers reported using PPE when handling flying foxes. Eighty-three percent of rehabilitators had received a flying fox bite or scratch at some point during their career. Carers provide an important community service by rescuing and rehabilitating flying foxes. While rehabilitators in this study have many excellent safety practices, including a 100% vaccination rate against rabies, there is room for improvement in PPE use. We recommend 1) the establishment of an Australia-wide set of guidelines for safety when caring for bats and 2) that the responsible government agencies in Australia support carers who rescue potentially ABLV-infected bats by offering compensation for PPE.
Bronchodilator reversibility testing in chronic obstructive pulmonary disease

Background: A limited or absent bronchodilator response is used to classify chronic obstructive pulmonary disease (COPD) and can determine the treatment offered. The reliability of the recommended response criteria and their relationship to disease progression has not been established. Methods: 660 patients meeting European Respiratory Society (ERS) diagnostic criteria for irreversible COPD were studied. Spirometric parameters were measured on three occasions before and after salbutamol and ipratropium bromide sequentially or in combination over 2 months. Responses were classified using the American Thoracic Society/GOLD (ATS) and ERS criteria. Patients were followed for 3 years with post-bronchodilator FEV1 and exacerbation history recorded 3 monthly and health status 6 monthly. Results: FEV1 increased significantly with each bronchodilator, a response that was normally distributed. Mean post-bronchodilator FEV1 was reproducible between visits (intraclass correlation 0.93). The absolute change in FEV1 was independent of the pre-bronchodilator value but the percentage change correlated with pre-bronchodilator FEV1 (r=−0.44; p<0.0001). Using ATS criteria, 52.1% of patients changed responder status between visits compared with 38.2% using ERS criteria. Smoking status, atopy, and withdrawing inhaled corticosteroids were unrelated to bronchodilator response, as was the rate of decline in FEV1, decline in health status, and exacerbation rate. Conclusion: In moderate to severe COPD bronchodilator responsiveness is a continuous variable. Classifying patients as “responders” and “non-responders” can be misleading and does not predict disease progression.
SEMEDA: ontology based semantic integration of biological databases

MOTIVATION Many molecular biological databases are implemented on relational Database Management Systems, which provide standard interfaces like JDBC and ODBC for data and metadata exchange. By using these interfaces, many technical problems of database integration vanish and issues related to semantics remain, e.g. the use of different terms for the same things, different names for equivalent database attributes and missing links between relevant entries in different databases. RESULTS In this publication, principles and methods that were used to implement SEMEDA (Semantic Meta Database) are described. Database owners can use SEMEDA to provide semantically integrated access to their databases as well as to collaboratively edit and maintain ontologies and controlled vocabularies. Biologists can use SEMEDA to query the integrated databases in real time without having to know the structure or any technical details of the underlying databases. AVAILABILITY SEMEDA is available at http://www-bm.ipk-gatersleben.de/semeda/. Database providers who intend to grant access to their databases via SEMEDA are encouraged to contact the authors.
Carbonized Micro- and Nanostructures: Can Downsizing Really Help?

In this manuscript, we discuss relationships between morphology and mechanical strength of carbonized structures, obtained via pyrolysis of polymeric precursors, across multiple length scales, from carbon fibers (CFs) with diameters of 5–10 μm to submicron thick carbon nanofibers (CNFs). Our research points to radial inhomogeneity, skin–core structure, as a size-dependent feature of polyacrylonitrile-based CFs. This inhomogeneity is a surface effect, caused by suppressed diffusion of oxygen and stabilization byproducts during stabilization through skin. Hence, reducing the precursor diameters from tens of microns to submicron appears as an effective strategy to develop homogeneous carbonized structures. Our research establishes the significance of this downsizing in developing lightweight structural materials by comparing intrinsic strength of radially inhomogeneous CFs with that of radially homogeneous CNF. While experimental studies on the strength of CNFs have targeted randomly oriented turbostratic domains, via continuum modeling, we have estimated that strength of CNFs can reach 14 GPa, when the basal planes of graphitic domains are parallel to nanofiber axis. The CNFs in our model are treated as composites of amorphous carbon (matrix), reinforced with turbostratic domains, and their strength is predicted using Tsai–Hill criterion. The model was calibrated with existing experimental data.
Evidence for a shared HLA-A intralocus determinant defined by monoclonal antibody 131

We describe here a monoclonal antibody, 131, which appears to recognize a determinant shared by HLA-A locus-encoded gene products. Isoelectric focusing analysis demonstrates that 131 reacts with the products of at least seven different HLA-A alleles but none of the five HLA-B allelic products tested. Together with evidence provided by other studies, this finding indicates the existence of A-unique and B-unique determinants, which may have different biological functions. Monoclonal antibody probes, such as the one described here, specific for shared intralocus determinants, may be valuable for assessing these possible functional differences.
Chemical Suppliers’ Perspectives and Impact on Innovation in the Wood Treating Industry

Recent challenges to forest sector firm competitiveness have driven interest in innovation to create a competitive advantage. Suppliers are a major source of innovation for forest sector firms, yet little study has been done on their role in the innovation process. Using a qualitative case study approach, we explore how chemical companies perceive innovation in the wood treating industry and how they feel they impact innovation among wood-treating firms. Our findings indicate that chemical company managers view the wood-treating industry as conservative and not particularly innovative. Additionally, retailers play a hampering and directing role regarding innovation in the industry. Chemical company managers feel that they have an important impact on innovation within their customer firms, partially because they see limited possibilities for differentiating wood products without value-added additions, such as chemical treatments. Currently, various mechanisms for coloring wood products, along with standard chemical treatments, are the focus of innovation efforts. Chemical company managers also view their role with customers as a problem-solver, providing a package of benefits following the total product concept. Finally, strong relationships between chemical suppliers and key innovative customers play an important role in creating and implementing innovations in the industry.
Two mechanisms for the detection of slow motion.

The lowest velocity at which motion can be detected, the lower threshold of motion (LTM), has been investigated as a function of eccentricity. Results show that temporal properties of the LTM change with eccentricity, suggesting a dichotomy in the temporal properties of the neural mechanisms subserving this aspect of central and peripheral vision. Suprathreshold drifting sinusoidal gratings were used with a method of constant stimuli (a two-alternative forced-choice procedure) to obtain the LTM for different stimulus durations at different eccentricities. Results for central vision support a displacement-based model of movement detection similar to that of Reichardt [in Sensory Communication, W.A. Rosenblith, ed. (Wiley, New York, 1961), p. 303]. The LTM decreases as the stimulus duration increases, thus maintaining a constant minimum displacement. However, the results for the far periphery (35 deg of eccentricity) suggest a different mechanism, in which detection depends not on a constant displacement but on a constant velocity; as the stimulus duration increases, the LTM remains constant. These results for gratings can also be generalized to other stimuli, for example, random-dot patterns presented in apparent motion.
Towards dynamically consistent real-time gait pattern generation for full-size humanoid robots

We propose a two-stage gait pattern generation scheme for the full-scale humanoid robots, that considers the dynamics of the system throughout the process. The fist stage is responsible for generating semi-dynamically consistent step position and step time information, while the second stage incorporated with multi-body dynamics system is responsible for generation of gait pattern that is feasible and stable on the full-scale multi-degree-of-freedom humanoid robot. The approach allows for very rapid gait pattern regeneration during the swing phase of motion and includes information about present dynamic state when regenerating the new pattern. The paper contains description of a developed method, as well as experimental results proving its effectiveness.
Parallel Computation of Domains of Attraction for Nonlinear Dynamic Systems

In this paper a parallel version of a new approach for investigation of the stability of nonlinear dynamic system swill be presented. It is an extension of an interval arithmetic approach which computes tight approximations for domains of attraction using the Lyapunov stability theory. Unfortunately, the execution time of the serial algorithm grows exponentially with an increase in the number of state space variables, which makes it time-consuming to solve tasks of higher dimensions. We will show that parallelization is a good strategy to overcome this drawback.
Bactericidal Activity of Granule Contents from Rat Polymorphonuclear Leukocytes

Granule contents from rat polymorphonuclear neutrophils were prepared by extraction with 0.2 M acetate (pH 4), dialyzed against phosphate-buffered saline (pH 7), and tested for bactericidal activity. Bactericidal assays consisted of mixing rat granule extract with 1 × 103 to 3 × 103 bacterial cells per ml at 37°C for 1 h in a medium suited for bacterial growth. The granule extract demonstrated a distinctive dose-dependent bactericidal activity against outer membrane lipopolysaccharide mutants of Salmonella typhimurium LT-2, independent of added hydrogen peroxide or other active oxygen derivatives. The rough bacterial mutants showed an ordered increase in sensitivity to the rat lysosomal extracts inversely related to the length of their lipopolysaccharide carbohydrate side chains. Fractionation of the rat polymorphonuclear neutrophil granule extract with Sephadex G-100 column chromatography revealed an elution profile containing three major areas (peaks) of protein. Polyacrylamide gel electrophoresis and examination of enzymatic activity showed that these peaks contained myeloperoxidase (peak A), neutral protease (peak B), and lysozyme (peak C) activities. Also observed in peak C were cationic protein species whose cathodal electrophoretic migration was faster than that for lysozyme. Only peak C exhibited a bactericidal activity against the rough mutants of S. typhimurium LT-2 similar to that obtained for the unfractionated granule extract, with susceptibility of the bacterial mutants increasing with a progressive loss of carbohydrate residues in the lipopolysaccharide of the cell wall. The bactericidal activity of the peak C protein fraction was dose dependent. Boiling the unfractionated granule extract or peak C for 30 min had little affect on their antimicrobial activity when reacted against a deep-rough lipopolysaccharide mutant. However, trypsin pretreatment of these fractions significantly reduced their antimicrobial activity for the same mutant chemotype.
Neurofilament medium polypeptide (NFM) protein concentration is increased in CSF and serum samples from patients with brain injury

Abstract Background: Brain injury is a medical emergency that needs to be diagnosed and treated promptly. Several proteins have been studied as biomarkers of this medical condition. The aims of this study were to: 1) evaluate the selectivity and precision of a commercial ELISA kit for neurofilament medium polypeptide (NFM) protein; and 2) evaluate the concentration in cerebrospinal fluid (CSF) and serum of healthy individuals and patients with brain damage. Methods: An ELISA from Elabscience was used. The selectivity was evaluated using size-exclusion chromatography and mass spectrometry. Intra- and inter-batch coefficients of variation (CV) were also studied. Fifty-one CSF samples from 36 age-matched patients with hemorrhagic stroke (HS) (n=30), ischemic stroke (IS) (n=11) and healthy individuals (n=10) were assayed. In addition, serum samples from healthy volunteers (n=47), 68 serum samples from seven patients with HS, 106 serum samples from 12 patients with traumatic brain injury (TBI) and 68 serum samples from 68 patients with mild traumatic brain injury (mTBI) were also analyzed. Results: NFM was identified in the chromatographic fraction with highest immunoreactivity. The intra- and inter-batch CVs were ≤10% and ≤13%, respectively. The CSF-NFM concentration in HS was significantly higher (p<0.0001) than in IS and controls. Serum NFM concentration ranged from 0.26 to 8.57 ng/mL in healthy individuals (median=2.29), from 0.97 to 42.4 ng/mL in HS (median=10.8) and from 3.48 to 45.4 ng/mL in TBI (median=14.7). Finally, 44% of patients with mTBI had increased NFM concentration, with significantly higher levels (p=0.01) in patients with polytrauma. Conclusions: To our knowledge this is the first study describing increased NFM levels in CSF and serum from patients with brain damage.