Miracle-dz/UniFAR-FTUs huggingface dataset:
Data-Dependent Learning of Symmetric/Antisymmetric Relations for Knowledge Base Completion

Embedding-based methods for knowledge base completion (KBC) learn representations of entities and relations in a vector space, along with the scoring function to estimate the likelihood of relations between entities. The learnable class of scoring functions is designed to be expressive enough to cover a variety of real-world relations, but this expressive comes at the cost of an increased number of parameters. In particular, parameters in these methods are superfluous for relations that are either symmetric or antisymmetric. To mitigate this problem, we propose a new L1 regularizer for Complex Embeddings, which is one of the state-of-the-art embedding-based methods for KBC. This regularizer promotes symmetry or antisymmetry of the scoring function on a relation-by-relation basis, in accordance with the observed data. Our empirical evaluation shows that the proposed method outperforms the original Complex Embeddings and other baseline methods on the FB15k dataset.
Potential Role of the Eastern Oyster, Crassostrea virginica, in the Epidemiology of Cryptosporidium parvum

Oysters were placed in an aquarium containing artificial seawater, and Cryptosporidium parvum oocysts were added. Oocysts were later found in the gill washings, hemocytes, and gut contents of the oysters. Hemocytes containing oocysts were intubated into four mice. C. parvum stages developed in the ileal epithelia of all of the mice, indicating that the oocysts in the hemocytes remained infective.
Vanilloid Receptor Expression and Capsaicin Excitation of Rat Dental Primary Afferent Neurons

Little is known about the molecular mechanisms that cause excitation of neurons which innervate the teeth. We investigated whether rat dental sensory neurons express the vanilloid (capsaicin) receptor (VR1). Dental sensory neurons were identified by retrograde transport of the fluorescent dye DiIC18 placed in maxillary molars. Patch-clamp recordings in culture showed that 65% of DiIC18-labeled rat trigeminal ganglion neurons are excited by capsaicin. Responders covered the entire range of cell sizes examined (soma diameter, 24 to 48 μm). All non-responders had a soma diameter > 33 μm. Capsazepine (1 μM) reduced the capsaicin-evoked membrane current (6/6) and depolarization (7/7 responders). RT-PCR amplified a 375-bp product from DiIC18-labeled neurons which was identical to that expected for VR1. Thus, many rat dental primary afferent neurons are excited by capsaicin, and the response appears to be mediated by VR1. These results suggest that pharmacological blockers of VR1 may provide significant relief of dental pain.
Implantable wireless powered light emitting diode (LED) for near-infrared photoimmunotherapy: device development and experimental assessment in vitro and in vivo

Purpose The aim of this study was to develop and assess a novel implantable, wireless-powered, light-emitting diode (LED) for near-infrared photoimmunotherapy (NIR-PIT). NIR-PIT is a recently developed cancer therapy that uses NIR light and antibody-photosensitizer conjugates and is able to induce cancer-specific cell death. Due to limited light penetration depth it is currently unable to treat tumors in deep tissues. Use of implanted LED might potentially overcome this limitation. Results The wireless LED system was able to emit NIR light up to a distance of 20 cm from the transmitter coil by using low magnetic fields as compliant with limits for use in humans. Results indicated that the LED system was able to kill tumor cells in vitro and to suppress tumor growth in implanted tumor-bearing mice. Conclusions Results indicated that the proposed implantable wireless LED system was able to suppress tumor growth in vivo. These results are encouraging as wireless LED systems such as the one here developed might be a possible solution to treat tumors in deep regions in humans. Further research in this area would be important. Materials and Methods An implantable LED system was developed. It consisted of a LED capsule including two LED sources and a receiver coil coupled with an external coil and power source. Wireless power transmission was guaranteed by using electromagnetic induction. The system was tested in vitro by using EGFR-expressing cells and HER2-expressing cells. The system was also tested in vivo in tumor-bearing mice.
Chemotactic adaptation kinetics of individual Escherichia coli cells

Escherichia coli chemotaxis serves as a paradigm for the way living cells respond and adapt to changes in their environment. The chemotactic response has been characterized at the level of individual flagellar motors and in populations of swimming cells. However, it has not been previously possible to quantify accurately the adaptive response of a single, multiflagellated cell. Here, we use our recently developed optical trapping technique to characterize the swimming behavior of individual bacteria as they respond to sudden changes in the chemical environment. We follow the adaptation kinetics of E. coli to varying magnitudes of step-up and step-down changes in concentration of chemoattractant. We quantify two features of adaptation and how they vary with stimulus strength: abruptness (the degree to which return to prestimulus behavior occurs within a small number of run/tumble events) and overshoot (the degree of excessive response before the return to prestimulus behavior). We also characterize the asymmetry between step-up and step-down responses, observed at the single-cell level. Our findings provide clues to an improved understanding of chemotactic adaptation.
Transcription factor IRF4 determines germinal center formation through follicular T-helper cell differentiation

Follicular T-helper (TFH) cells cooperate with GL7+CD95+ germinal center (GC) B cells to induce antibody maturation. Herein, we identify the transcription factor IRF4 as a T-cell intrinsic precondition for TFH cell differentiation and GC formation. After immunization with protein or infection with the protozoon Leishmania major, draining lymph nodes (LNs) of IFN-regulatory factor-4 (Irf4−/−) mice lacked GCs and GC B cells despite developing normal initial hyperplasia. GCs were also absent in Peyer’s patches of naive Irf4−/− mice. Accordingly, CD4+ T cells within the LNs and Peyer’s patches failed to express the TFH key transcription factor B-cell lymphoma-6 and other TFH-related molecules. During chronic leishmaniasis, the draining Irf4−/− LNs disappeared because of massive cell death. Adoptive transfer of WT CD4+ T cells or few L. major primed WT TFH cells reconstituted GC formation, GC B-cell differentiation, and LN cell survival. In support of a T-cell intrinsic IRF4 activity, Irf4−/− TFH cell differentiation was not rescued by close neighborhood to transferred WT TFH cells. Together with its known B lineage-specific roles during plasma cell maturation and class switch, our study places IRF4 in the center of antibody production toward T-cell–dependent antigens.
Interactions among Plant Species and Microorganisms in Salt Marsh Sediments

ABSTRACT The interactions among Spartina patens and sediment microbial populations and the interactions among Phragmites australis and sediment microbial populations were studied at monotypic sites in Piermont Marsh, a salt marsh of the Hudson River north of New York, N.Y. , at key times during the growing season. Arbuscular mycorrhizal fungi (AMF) effectively colonized S. patens but not P. australis, and there were seasonal increases and decreases that coincided with plant growth and senescence (17 and 6% of the S. patens root length were colonized, respectively). In sediment samples from the Spartina site, the microbial community and specific bacterial populations were at least twice as large in terms of number and biomass as the microbial community and specific bacterial populations in sediment samples from the Phragmites site, and peak values occurred during reproduction. Members of the domain Bacteria, especially members of the α-, γ-, and δ-subdivisions of the Proteobacteria, were the most abundant organisms at both sites throughout the growing season. The populations were generally more dynamic in samples from the Spartina site than in samples from the Phragmites site. No differences between the two sites and no differences during the growing season were observed when restriction fragment length polymorphism analyses of nifH amplicons were performed in an attempt to detect shifts in the diversity of nitrogen-fixing bacteria. Differences were observed only in the patterns generated by PCR or reverse transcription-PCR for samples from the Spartina site, suggesting that there were differences in the overall and active populations of nitrogen-fixing bacteria. Regression analyses indicated that there was a positive interaction between members of the δ-subdivision of the Proteobacteria and root biomass but not between members of the δ-subdivision of the Proteobacteria and macroorganic matter at both sites. In samples from the Spartina site, there were indications that there were bacterium-fungus interactions since populations of members of the α-subdivision of the Proteobacteria were negatively associated with AMF colonization and populations of members of the γ-subdivision of the Proteobacteria were positively associated with AMF colonization.
Long-term record of aerosol optical properties and chemical composition from a high-altitude site (Manora Peak) in Central Himalaya

Abstract. A long-term study, conducted from February 2005 to July 2008, involving chemical composition and optical properties of ambient aerosols from a high-altitude site (Manora Peak: 29.4° N, 79.5° E, ~1950 m a.s.l.) in the central Himalaya is reported here. The total suspended particulate (TSP) mass concentration varied from 13 to 272 μg m−3 over a span of 42 months. Aerosol optical depth (AOD) and TSP increase significantly during the summer (April–June) due to increase in the concentration of mineral dust associated with the long-range transport from desert regions (from the middle-East and Thar Desert in western India). The seasonal variability in the carbonaceous species (EC, OC) is also significantly pronounced, with lower concentrations during the summer and monsoon (July–August) and relatively high during the post-monsoon (September–November) and winter (December–March). On average, total carbonaceous aerosols (TCA) and water-soluble inorganic species (WSIS) contribute nearly 25 and 10% of the TSP mass, respectively. The WSOC/OC ratios range from 0.36 to 0.83 (average: 0.55 ± 0.15), compared to lower ratios in the Indo-Gangetic Plain (range: 0.35–0.40), and provide evidence for the enhanced contribution from secondary organic aerosols. The mass fraction of absorbing EC ranged from less than a percent (during the summer) to as high as 7.6% (during the winter) and absorption coefficient (babs, at 678 nm) varied between 0.9 to 33.9 Mm−1 (1 Mm−1=10−6 m−1). A significant linear relationship between babs and EC (μgC m−3) yields a slope of 12.2 (± 2.3) m2 g−1, which is used as a measure of the mass absorption efficiency (σabs) of EC.
Fluctuations in pathogenic CD4+ T-cell subsets in a murine sclerodermatous model of chronic graft-versus-host disease

To determine the roles of CD4+ T-cell (Th) subsets, including Th17 cells, in the development of chronic graft-versus-host disease (cGVHD), we used a Th-dependent cGVHD model comprising B10.D2 donor and BALB/c recipient mice. The clinical GVHD score increased beginning at day +14, peaked at day +42, and remained elevated until day +70. In the skin, increased dermal thickness was apparent at day +14, and maintained with few changes until day +70. In contrast, the liver had peak pathologic scores at day +28, and the tissue damage began to improve at day +56. To determine possible associations between improvement of liver pathology and changes in Th subsets, we analyzed Th subsets using flow cytometry. Th1 frequencies in the livers were greater than other Th subsets throughout the disease course, but the frequencies decreased over time. Notably, Th17 cells were rarely detected during earlier periods, but emerged at day +56, which correlated with the improved hepatic inflammation. In contrast, other Th subsets (Th2 and regulatory T cells) did not change significantly during the disease course. These results indicate the association of attenuation on cGVHD with a later emergence of Th17 cells and concomitant decrease of Th1 cells.
Strategic networks for increased regional competitiveness: two Swedish cases

Purpose – Clusters and networks have become cornerstones of regional development efforts. This paper discusses the ability of regional strategic networks (RSN) to bring about cluster effects and how structural factors will affect performance of RSNs.Design/methodology/approach – The paper compares structural aspects of prosperous clusters, as identified in cluster theory, with characteristics of RSNs. A theoretical discussion is supplemented with a study of two Swedish cases with structurally different settings.Findings – It is found that membership in a RSN may increase the competitiveness of individual firms and thereby also have a positive impact on regional competitiveness. However, a RSN cannot fully reproduce or create cluster conditions. The main outcome in the cases concerned visibility aspects of firm membership.Practical implications – Network initiators and coordinators will benefit from awareness of implications for outcomes caused by the member composition of RSNs.Originality/value – By analy.
White Matter Network Architecture Guides Direct Electrical Stimulation through Optimal State Transitions

Electrical brain stimulation is currently being investigated as a potential therapy for neurological disease. However, opportunities to optimize and personalize such therapies are challenged by the fact that the beneficial impact (and potential side effects) of focal stimulation on both neighboring and distant regions is not well understood. Here, we use network control theory to build a formal model of brain network function that makes explicit predictions about how stimulation spreads through the brain’s white matter network and influences large-scale dynamics. We test these predictions using combined electrocorticography (ECoG) and diffusion weighted imaging (DWI) data from patients with medically refractory epilepsy undergoing evaluation for resective surgery, and who volunteered to participate in an extensive stimulation regimen. We posit a specific model-based manner in which white matter tracts constrain stimulation, defining its capacity to drive the brain to new states, including states associated with successful memory encoding. In a first validation of our model, we find that the true pattern of white matter tracts can be used to more accurately predict the state transitions induced by direct electrical stimulation than the artificial patterns of a topological or spatial network null model. We then use a targeted optimal control framework to solve for the optimal energy required to drive the brain to a given state. We show that, intuitively, our model predicts larger energy requirements when starting from states that are farther away from a target memory state. We then suggest testable hypotheses about which structural properties will lead to efficient stimulation for improving memory based on energy requirements. We show that the strength and homogeneity of edges between controlled and uncontrolled nodes, as well as the persistent modal controllability of the stimulated region, predict energy requirements. Our work demonstrates that individual white matter architecture plays a vital role in guiding the dynamics of direct electrical stimulation, more generally offering empirical support for the utility of network control theoretic models of brain response to stimulation.
Skeletal Effects of Estrogen Are Mediated by Opposing Actions of Classical and Nonclassical Estrogen Receptor Pathways

ERα acts either through classical (ERE‐mediated) or nonclassical (non‐ERE) pathways. The generation of mice carrying a mutation that eliminates classical ERα signaling presents a unique opportunity to study the relative roles of these pathways in bone. This study defines the skeletal phenotype and responses to ovariectomy and estrogen replacement in these mice.
Circulating Endothelial Progenitor Cells and Coronary Collaterals in Patients with Non-ST Segment Elevation Myocardial Infarction

Background: Endothelial progenitor cells (EPCs) are bone marrow-derived cells that are augmented in response to ischemia and incorporated into neovascularization sites. We sought to determine whether circulating EPCs are related to collateral formation following non-ST segment elevation myocardial infarction (NSTEMI). Methods: Twenty patients who underwent percutaneous coronary intervention (PCI) within a week of NSTEMI were divided into two groups: patients without collaterals (coll–, n = 10) and patients with Rentrop grade 3–4 collaterals (coll+, n = 10). Blood samples were drawn before PCI and 24 ± 2 h after PCI. EPC colonies were grown from peripheral blood mononuclear cells, characterized, and counted. Using flow cytometry the percentage of cells coexpressing vascular endothelial growth factor receptor-2 and CD133 was determined. Results: The coll+ group had higher degree of culprit vessel stenosis and lower initial thrombolysis in myocardial infarction flow grade. The relative number of EPCs before PCI was significantly higher in the coll+ group than in the coll– group (1.49 ± 0.9% vs. 0.77 ± 0.4%, p = 0.045). There were no significant intergroup differences in the number of EPC colony-forming cells. The number of EPC colonies increased in the coll– group after PCI (9.5 ± 4.8 to 14.0 ± 5.9/106 cells, p = 0.01). Conclusions: This study supports an association between circulating EPC levels and collateral formation in patients with an NSTEMI.
An Exploration of the International Comparison Program&Apos;S New Global Economic Landscape

The Purchasing Power Parity (PPP) rates from the 2011 round of the International Comparison Program (ICP) imply some dramatic revisions to price levels and real incomes across the world. The paper tries to understand these changes. Domestic inflation rates account for a share of the PPP changes, although less so for the 2011 revisions than prior ICP rounds. A marked downward drift in ICP price levels for developing countries also emerged in 2011. Conditional on domestic price changes, the co-movement of PPPs with market exchange rates suggests that that the ICP puts higher weight on more internationally comparable traded-goods than do domestic indices. There is also evidence of a Dynamic Penn Effect, whereby economic growth comes with higher prices. The drift is concentrated in the Asia regional groupings used for ICP implementation. The results are not consistent with expectations based on the only methodological change identified to date although other explanations remain to be investigated.
Self-Employment: A Labor Market Perspective

suggest an inflow considerably smaller than is often reported in the media. (5) An additional contribution of the NBER Immigration Project, beyond the valuable research studies summarized here, is the creation of a data set tailored to analyze these issues, which has been made generally available. In an appendix to the volume, Abowd provides a detailed description of the Immigration, Trade, and Labor Markets Data Files generated by the Project. This type of contribution is vital to the advancement of knowledge and, unfortunately, tends to be greatly undervalued by economists. In summary, this carefully researched volume presents important new empirical findings that will be of considerable interest to labor economists and policy-makers. The research in this volume will undoubtedly serve as a point of departure for future work on immigration, trade, and the labor market.
Substrate induction of osteogenesis from marrow-derived mesenchymal precursors.

Therapeutic modalities aimed at bone regeneration are increasingly employing extracellular matrix (ECM) constituents to control bone marrow progenitor cell (BMPC) commitment, growth, and differentiation. However, the precise role these ECM elements play during stem cell differentiation remains unclear. (See also Salaszynk et al., Stem Cells Dev 14(6):608-620, 2005; and Schwartz et al., Stem Cells Dev. 14(6), 643-655, 2005, both in this issue. ) Because bone formation ultimately begins with the recruitment and commitment of BMPCs into the osteogenic lineage, factors that enhance this process are clearly therapeutic targets. We hypothesized that BMPC attachment, proliferation, and osteogenic differentiation would be potentiated when cultured on ECM proteins normally found in the bone niche. To examine this, we cultured murine BMPCs on laminin-1, fibronectin, and collagen type-1 substrates for up to 14 days and assessed their homogeneity, attachment, proliferation, and expression of the specific bone lineage markers RUNX2, collagen-1, alkaline phosphatase, and osteocalcin. We found that freshly harvested mBMPCs contain a mixed population of progenitor cells and that the mesenchymal pool can be enriched by adherent culture in the presence of leucine methyl ester. Furthermore, mBMPCs attached to laminin, fibronectin, and collagen-1 with varying affinity up to 3 h (fibronectin>or=collagen>laminin), after which time no difference could be detected. Despite this, growth was unaffected; cells thereafter proliferated equally well on all substrates up to confluence (7 days). Notably, commitment to the osteoblast lineage (RUNX2) increased up to 14 days for cells cultured on the various substrates, yet no difference was observed at day 14 in the expression of collagen-1, alkaline phosphatase, or osteocalcin. We conclude that mBMPC differentiation down the osteoblastic lineage is time-dependent in osteogenic culture and that attachment to ECM matrices potentiates lineage commitment rather than growth.
Calling It Quits: Strategic Retirement on the Federal Courts of Appeals, 1893-1991

Does politics influence judicial retirements? Judicial scholars have long ac knowledged the role of politics in the judicial appointment process and in judicial decision making, but the judicial retirement literature presents divergent conclusions on the effect of politics. We employ an event count model to test the influence of politics on the annual number of voluntary departures from the federal courts of appeals from 1893 through 1991. Our data provide evidence that more judges are likely to retire when politi cal conditions favor the selection of successors sharing their policy views or when unfavorable political conditions appear unlikely to change. These political factors are significant even after controlling for the costs incurred by continued service on the courts, such as diminishing salary, increasing caseload, age, and improved retirement benefits.