Miracle-dz/UniFAR-FTUs huggingface dataset:
Competition and Quality: Evidence from the NHS Internal Market 1991-1999

Payer-driven competition has been widely advocated as a means of increasing efficiency in health care markets. The 1990s reforms to the UK health service followed this path. We examine whether competition led to better outcomes for patients, as measured by death rates after treatment following heart attacks. Using data on mortality as a measure of hospital quality and exploiting the policy change during the 1990s, we find that the relationship between competition and quality of care appears to be negative.
Genetic analysis of the cIII gene of bacteriophage HK022

The cIII gene product of lambdoid bacteriophages promotes lysogeny by stabilizing the phage-encoded CII protein, a transcriptional activator of the repressor and integrase genes. Previous works showed that the synthesis of the bacteriophage lambda CIII protein has specific translational requirements imposed by the structure of the mRNA. To gain insight into the mRNA structure and its role in regulating cIII translation, we undertook a mutational analysis of the cIII gene of the related bacteriophage HK022. Our data support the hypothesis that in HK022, as in lambda, translation initiation requires a specific mRNA structure. In addition, we found that translation of HK022 cIII, like that of lambda, is strongly reduced in a host deficient in the endonuclease RNase III.
ARTICLE WITH PEER COMMENTARIES AND RESPONSE Young infants' expectations about hidden objects: a reply to three challenges

In this article, I address three broad challenges that have been directed at claims that even young infants are able to represent and to reason about hidden objects. The first challenge is that such claims are static and non-developmental and as such represent an unproductive approach to the study of infant cognition. The second challenge is that claims that even young infants represent hidden objects typically go hand in hand with assertions that infants are born with a belief that objects exist continuously in time and move continuously through space, and there is no evidence to date to support such assertions. Finally, the third challenge is that reports that young infants represent hidden objects can all be explained more parsimoniously in terms of low level perceptual biases in infants’ encoding and processing of events, or in terms of transient expectations formed during habituation trials and later extended to test trials.
Cover Crops May Cause Winter Warming in Snow‐Covered Regions

Cover crops, grown between cash crops when soil is fallow, are a management strategy that may help mitigate climate change. The biogeochemical effects of cover crops are well documented, as they provide numerous localized benefits to farmers. We test potential biogeophysical climate impacts of idealized cover crop scenarios by assuming that cover crops are planted offseason in all crop regions throughout North America. Our results suggest that planting cover crops increases wintertime temperature up to 3 °C in central North America by decreasing albedo in regions with variable snowpack. Cover crops with higher leaf area indices increase temperature more by decreasing broadband albedo, while decreasing cover crop height helped to mitigate the temperature increase as the shorter height was more frequently buried by snow. Thus, climate mitigation potential must consider the biogeophysical impacts of planting cover crops, and varietal selection can minimize winter warming.
Stress-dependent elastic properties of shales—laboratory experiments at seismic and ultrasonic frequencies

S U M M A R Y Knowledge about the stress sensitivity of elastic properties and velocities of shales is important for the interpretation of seismic time-lapse data taken as part of reservoir and caprock surveillance of both unconventional and conventional oil and gas fields (e.g. during 4-D monitoring of CO2 storage). Rock physics models are often developed based on laboratory measurements at ultrasonic frequencies. However, as shown previously, shales exhibit large seismic dispersion, and it is possible that stress sensitivities of velocities are also frequency dependent. In this work, we report on a series of seismic and ultrasonic laboratory tests in which the stress sensitivity of elastic properties of Mancos shale and Pierre shale I were investigated. The shales were tested at different water saturations. Dynamic rock engineering parameters and elastic wave velocities were examined on core plugs exposed to isotropic loading. Experiments were carried out in an apparatus allowing for static-compaction and dynamic measurements at seismic and ultrasonic frequencies within single test. For both shale types, we present and discuss experimental results that demonstrate dispersion and stress sensitivity of the rock stiffness, as well as Pand S-wave velocities, and stiffness anisotropy. Our experimental results show that the stress-sensitivity of shales is different at seismic and ultrasonic frequencies, which can be linked with simultaneously occurring changes in the dispersion with applied stress. Measured stress sensitivity of elastic properties for relatively dry samples was higher at seismic frequencies however, the increasing saturation of shales decreases the difference between seismic and ultrasonic stress-sensitivities, and for moist samples stress-sensitivity is higher at ultrasonic frequencies. Simultaneously, the increased saturation highly increases the dispersion in shales. We have also found that the stress-sensitivity is highly anisotropic in both shales and that in some of the cases higher stress-sensitivity of elastic properties can be seen in the direction parallel to the bedding plane.
Changes in the surface coats of neoplastic human breast epithelium.

Phosphotungstic acid at low pH has been used as a section stain to make visible the surface coats of benign and malignant epithelial cells from human breast biopsies in the electron microscope. For this purpose, tissue is fixed in glutaraldehyde and embedded in the water-soluble plastic glycol methacrylate. Duct epithelial cells from all the biopsies containing benign tissue showed consistently more phosphotungstic acid-positive material at their surfaces than did the malignant cells. These results from an in vivo system are consistent with the observations of others, who have shown that there are lower amounts of sugars at the surfaces of transformed cells in culture. Thus, alterations of surface polymers, such as glycoproteins, may be important in the development and maintenance of the altered growth properties of malignant breast epithelial cells in vivo .
Localized Surface Plasmon Resonances: Noble Metal Nanoparticle Interaction with Rare-Earth Ions

© 2012 Rivera et al., licensee InTech. This is an open access chapter distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Localized Surface Plasmon Resonances: Noble Metal Nanoparticle Interaction with Rare-Earth Ions
Yeast Isw1p Forms Two Separable Complexes In Vivo

ABSTRACT There are several classes of ATP-dependent chromatin remodeling complexes, which modulate the structure of chromatin to regulate a variety of cellular processes. The budding yeast, Saccharomyces cerevisiae, encodes two ATPases of the ISWI class, Isw1p and Isw2p. Previously Isw1p was shown to copurify with three other proteins. Here we identify these associated proteins and show that Isw1p forms two separable complexes in vivo (designated Isw1a and Isw1b). Biochemical assays revealed that while both have equivalent nucleosome-stimulated ATPase activities, Isw1a and Isw1b differ in their abilities to bind to DNA and nucleosomal substrates, which possibly accounts for differences in specific activities in nucleosomal spacing and sliding. In vivo, the two Isw1 complexes have overlapping functions in transcriptional regulation of some genes yet distinct functions at others. In addition, these complexes show different contributions to cell growth at elevated temperatures.
Extracting Important Sentences with Support Vector Machines

Extracting sentences that contain important information from a document is a form of text summarization. The technique is the key to the automatic generation of summaries similar to those written by humans. To achieve such extraction, it is important to be able to integrate heterogeneous pieces of information. One approach, parameter tuning by machine learning, has been attracting a lot of attention. This paper proposes a method of sentence extraction based on Support Vector Machines (SVMs). To confirm the method's performance, we conduct experiments that compare our method to three existing methods. Results on the Text Summarization Challenge (TSC) corpus show that our method offers the highest accuracy. Moreover, we clarify the different features effective for extracting different document genres.
Contrasting silencing mechanisms of the same target mRNA by two regulatory RNAs in Escherichia coli

Abstract Small RNAs are key components of complex regulatory networks. These molecules can integrate multiple cellular signals to control specific target mRNAs. The recent development of high-throughput methods tremendously helped to characterize the full targetome of sRNAs. Using MS2-affinity purification coupled with RNA sequencing (MAPS) technology, we reveal the targetomes of two sRNAs, CyaR and RprA. Interestingly, both CyaR and RprA interact with the 5′-UTR of hdeD mRNA, which encodes an acid-resistance membrane protein. We demonstrate that CyaR classically binds to the RBS of hdeD, interfering with translational initiation. We identified an A/U-rich motif on hdeD, which is bound by the RNA chaperone Hfq. Our results indicate that binding of this motif by Hfq is required for CyaR-induced degradation of hdeD mRNA. Additional data suggest that two molecules of RprA must bind the 5′-UTR of hdeD to block translation initiation. Surprisingly, while both CyaR and RprA sRNAs bind to the same motif on hdeD mRNA, RprA solely acts at the translational level, leaving the target RNA intact. By interchanging the seed region of CyaR and RprA sRNAs, we also swap their regulatory behavior. These results suggest that slight changes in the seed region could modulate the regulation of target mRNAs.
Comparative Genomics of Foot-and-Mouth Disease Virus

ABSTRACT Here we present complete genome sequences, including a comparative analysis, of 103 isolates of foot-and-mouth disease virus (FMDV) representing all seven serotypes and including the first complete sequences of the SAT1 and SAT3 genomes. The data reveal novel highly conserved genomic regions, indicating functional constraints for variability as well as novel viral genomic motifs with likely biological relevance. Previously undescribed invariant motifs were identified in the 5′ and 3′ untranslated regions (UTR), as was tolerance for insertions/deletions in the 5′ UTR. Fifty-eight percent of the amino acids encoded by FMDV isolates are invariant, suggesting that these residues are critical for virus biology. Novel, conserved sequence motifs with likely functional significance were identified within proteins Lpro, 1B, 1D, and 3C. An analysis of the complete FMDV genomes indicated phylogenetic incongruities between different genomic regions which were suggestive of interserotypic recombination. Additionally, a novel SAT virus lineage containing nonstructural protein-encoding regions distinct from other SAT and Euroasiatic lineages was identified. Insights into viral RNA sequence conservation and variability and genetic diversity in nature will likely impact our understanding of FMDV infections, host range, and transmission.
Loss of the insulin receptor in murine megakaryocytes/platelets causes thrombocytosis and alterations in IGF signalling

Aims Patients with conditions that are associated with insulin resistance such as obesity, type 2 diabetes mellitus, and polycystic ovary syndrome have an increased risk of thrombosis and a concurrent hyperactive platelet phenotype. Our aim was to determine whether insulin resistance of megakaryocytes/platelets promotes platelet hyperactivation. Methods and results We generated a conditional mouse model where the insulin receptor (IR) was specifically knocked out in megakaryocytes/platelets and performed ex vivo platelet activation studies in wild-type (WT) and IR-deficient platelets by measuring aggregation, integrin αIIbβ3 activation, and dense and α-granule secretion. Deletion of IR resulted in an increase in platelet count and volume, and blocked the action of insulin on platelet signalling and function. Platelet aggregation, granule secretion, and integrin αIIbβ3 activation in response to the glycoprotein VI (GPVI) agonist collagen-related peptide (CRP) were significantly reduced in platelets lacking IR. This was accompanied by a reduction in the phosphorylation of effectors downstream of GPVI. Interestingly, loss of IR also resulted in a reduction in insulin-like growth factor-1 (IGF-1)- and insulin-like growth factor-2 (IGF-2)-mediated phosphorylation of IRS-1, Akt, and GSK3β and priming of CRP-mediated platelet activation. Pharmacological inhibition of IR and the IGF-1 receptor in WT platelets recapitulated the platelet phenotype of IR-deficient platelets. Conclusions Deletion of IR (i) increases platelet count and volume, (ii) does not cause platelet hyperactivity, and (iii) reduces GPVI-mediated platelet function and platelet priming by IGF-1 and IGF-2.
The correction factors of mindlin plate theory with and without electrodes for SC-cut quartz crystal plates

Mindlin plate theory was first developed to provide accurate solutions for vibrations of thickness-shear mode, which has a much higher frequency than usual flexure vibrations. It has been widely used in the analysis of high frequency vibrations of quartz crystal plates, which are the core of resonators. The vibration frequency solutions obtained with Mindlin plate theory are proven much closer to the exact solutions. However, due to the truncation and approximation, the plate equations need to be corrected, as compared with the three-dimensional elasticity solutions. This has been done for the high-order Mindlin plate theory with and without electrodes for the AT-cut quartz crystal plates, and correction factors have been obtained though both natural and symmetric procedures. The correction factors could be used in the dispersion relationship and frequency spectrum in the analytical solutions, while the symmetric correction factors can be used in the finite element method implementation. Both correction schemes can provide improved and accurate results in the analysis of quartz crystal resonators. The electrodes are considered though its inertia effect as mass ratio known in resonator analysis.
Pupil size variations correlate with physical effort perception

It has long been established that the pupil diameter increases during mental activities in proportion to the difficulty of the task at hand. However, it is still unclear whether this relationship between the pupil size and effort applies also to physical effort. In order to address this issue, we asked healthy volunteers to perform a power grip task, at varied intensity, while evaluating their effort both implicitly and explicitly, and while concurrently monitoring their pupil size. Each trial started with a contraction of imposed intensity, under the control of a continuous visual feedback. Upon completion of the contraction, participants had to choose whether to replicate, without feedback, the first contraction for a variable monetary reward, or whether to skip this step and go directly to the next trial. The rate of acceptance of effort replication and the amount of force exerted during the replication were used as implicit measures of the perception of the effort exerted during the first contraction. In addition, the participants were asked to rate on an analog scale, their explicit perception of the effort for each intensity condition. We found that pupil diameter increased during physical effort and that the magnitude of this response reflected not only the actual intensity of the contraction but also the subjects' perception of the effort. This finding indicates that the pupil size signals the level of effort invested in a task, irrespective of whether it is physical or mental. It also helps refining the potential brain circuits involved since the results of the current study imply a convergence of mental and physical effort information at some level along this pathway.
Meta‐Analysis of Transcriptome Regulation During Induction to Cardiac Myocyte Fate From Mouse and Human Fibroblasts

Ectopic expression of a defined set of transcription factors (TFs) can directly convert fibroblasts into a cardiac myocyte cell fate. Beside inefficiency in generating induced cardiomyocytes (iCMs), the molecular mechanisms that regulate this process remained to be well defined. The main purpose of this study was to provide better insight on the transcriptome regulation and to introduce a new strategy for candidating TFs for the transdifferentiation process. Eight mouse and three human high quality microarray data sets were analyzed to find differentially expressed genes (DEGs), which we integrated with TF‐binding sites and protein–protein interactions to construct gene regulatory and protein–protein interaction networks. Topological and biological analyses of constructed gene networks revealed the main regulators and most affected biological processes. The DEGs could be categorized into two distinct groups, first, up‐regulated genes that are mainly involved in cardiac‐specific processes and second, down‐regulated genes that are mainly involved in fibroblast‐specific functions. Gata4, Mef2a, Tbx5, Tead4 TFs were identified as main regulators of cardiac‐specific gene expression program; and Trp53, E2f1, Myc, Sfpi1, Lmo2, and Meis1 were identified as TFs which mainly regulate the expression of fibroblast‐specific genes. Furthermore, we compared gene expression profiles and identified TFs between mouse and human to find the similarities and differences. In summary, our strategy of meta‐analyzing the data of high‐throughput techniques by computational approaches, besides revealing the mechanisms involved in the regulation of the gene expression program, also suggests a new approach for increasing the efficiency of the direct reprogramming of fibroblasts into iCMs. J. Cell. Physiol. 232: 2053–2062, 2017. © 2016 Wiley Periodicals, Inc.
Cholesterol at the crossroads: Alzheimer's disease and lipid metabolism

Alzheimer's Disease (AD) is a devastating disease that affects millions of elderly persons. Despite years of intense investigations, genetic risk factors that affect the majority of AD cases have yet to be determined. Recent studies suggest that cholesterol metabolism has integral part in AD pathogenesis, suggesting that genes that regulate lipid metabolism may also play roles in AD. This review will first describe emerging evidence that links cholesterol to the mechanisms thought to underlie AD. Based on this rationale, candidate genes located in regions implicated in AD that have roles in lipid metabolism will then be discussed.
Family processes that shape the impact of interparental conflict on adolescents

This study draws on the family systems concepts of triangulation and wholism to investigate how interparental conflict may affect adolescents' psychological adjustment. An ethnically and socioeconomically diverse sample (N = 388) of 14- to 18-year-olds completed measures of interparental conflict, family relationships, internalizing problems, and externalizing problems. We found that triangulation into parental disagreements mediated the association between parental conflict and both internalizing and externalizing problems. Adolescents exposed to more frequent, intense, and poorly resolved conflict were more likely to feel triangulated, but this association was moderated by the nature of the alliances they had with their parents. Specifically, at low levels of interparental conflict, adolescents who had substantially stronger alliances with one parent than the other reported greater triangulation than those with more balanced alliances. At high levels of conflict, these groups reported similar degrees of triangulation. We also found that supportive parent–child relationships reduced adolescents' appraisals of threat and self-blame for interparental conflict, while more empathic relationships with siblings increased these appraisals. Finally, close relationships with fathers acted as a protective factor that reduced symptoms of maladjustment.
Audiovisual discrimination of CV syllables: a simultaneous fMRI-EEG study

We carried out a simultaneous fMRI-EEG experiment based on discriminating syllabic minimal pairs involving three phonological contrasts characterized by different degrees of visual distinctiveness (vocalic labialization, consonantal place of articulation or voicing). Audiovisual CV syllable pairs were presented either with a static facial configuration or with a dynamic display of articulatory movements. In the sound-disturbed MRI environment, the significant improvement of syllabic discrimination achieved in the dynamic audiovisual modality, compared to the static audiovisual modality was associated with activation of the occipito-temporal cortex (MT + V5) bilaterally, and of the left premotor cortex. MT + V5 was activated in response to facial movements independently of their relation to speech, the latter was specifically activated by phonological discrimination. Significant ERP’s to syllabic discrimination were recorded around 150 and 250 ms. Our results provide arguments for the involvement of the speech motor cortex in phonological discrimination, and suggest a multimodal representation of speech units.
Genetic diversity of a successful colonizer: isolated populations of Metrioptera roeselii regain variation at an unusually rapid rate

Newly founded isolated populations need to overcome detrimental effects of low genetic diversity. The establishment success of a population may therefore depend on various mechanisms such as assortative mating, purging of deleterious alleles, creation of new mutations and/or repeated inflow of new genotypes to reduce the effects of inbreeding and further loss of genetic variation. We compared the level of genetic variation in introduced populations of an insect species (Metrioptera roeselii) far beyond its natural distribution with levels found in their respective founder populations and coupled the data with timing since establishment. This allowed us to analyze if the introduced populations showed signs of temporal changes in genetic variation and have made it possible to evaluate underlying mechanisms. For this, we used neutral genetic markers, seven microsatellite loci and a 676–bp-long sequence of the mtDNA COI gene. All tested indices (allelic richness, unbiased expected heterozygosity, effective size, haplotype diversity, and nucleotide diversity) except inbreeding coefficient had significantly higher values in populations within the founding populations inside the continuous area of the species distribution compared with the introduced populations. A logarithmic model showed a significant correlation of both allelic richness and unbiased expected heterozygosity with age of the isolated populations. Considering the species' inferred colonization history and likely introduction pathways, we suggest that multiple introductions are the main mechanism behind the temporal pattern observed. However, we argue that influences of assortative mating, directional selection, and effects of an exceptional high intrapopulation mutation rate may have impacts. The ability to regain genetic diversity at this level may be one of the main reasons why M. roeselii successfully continue to colonize northern Europe.