Miracle-dz/UniFAR-FTUs huggingface dataset:
Dibutyltin depressed immune functions via NF‐κB, and JAK/STAT signaling pathways in zebrafish (Danio rerio)

Dibutyltin (DBT) is the degradation products of TBT, which is generally considered higher toxicity than TBT in the immune system. In order to learn more about the mechanisms of immune‐toxic of DBT, we exposed zebrafish (Danio rerio) to 0, 1, 10 and 100 ng/L DBT for 8 weeks. At the end of the experiment, we determined the immune parameters and immune‐related genes. The results showed that with an increase in TBT dose, lysozyme activities and IgM, C3, C4 content in intestine, skin and spleen were all significantly inhibited by the DBT exposure. Fish exposed to 10 ng/L and 100 ng/L showed significantly lower lysozyme activities and IgM, C3, C4 content than those of the control group. Zebrafish exposed to 10 ng/L and 100 ng/L DBT, the mRNA transcript levels of interleukin‐1β (IL‐1β), interleukin‐6 (IL‐6), interleukin‐8 (IL‐8), tumor necrosis factor‐α (TNF‐α), interferon γ2 (INFγ2), nuclear factor‐κB p65 (NF‐kB p65), inhibitor protein‐κBα (IκBα), IκB kinases β (IKKβ), Janus family of protein tyrosine kinases (JAKs) and the signal transducers and activators of transcription proteins (STATs) all increased with the DBT levels in the intestine and spleen. Those parameters showed significantly higher values in 10 ng/L and 100 ng/L than those of fish in the control group. However, no significant difference was found in IκB kinases α (IKKα) and IκB kinase γ (IKKγ) mRNA levels in the intestine and spleen. These data imply that DBT might be via suppression on IKKβ/IkBa/NF‐kBp65 and JAK/STAT signaling pathways to regulate the immunity of zebrafish.
Longitudinal changes in adult fat-free mass: influence of body weight.

BACKGROUND Almost all of the data on changes in body composition during aging are cross-sectional in nature. These show that fat-free mass (FFM) declines with age. OBJECTIVE The goal was to analyze results of assays done in the author's laboratory of the FFM of normal adults studied at intervals for >/=2 decades to ascertain longitudinal changes. DESIGN (40)K counting was used to estimate FFM in adult university personnel (15 men, 5 women) over periods ranging from 21 to 38 y. No advice was given about diet or exercise. RESULTS There was considerable variation in the change of FFM over time. Some subjects lost FFM as the years went by, whereas others actually gained FFM. Analysis of the data showed that change in body weight was a prime factor in determining the magnitude and direction of the FFM change (R(2) = 0.54). Adults who maintained their weight lost an average of 1.5 kg FFM per decade and so gained an equal amount of fat; those who lost weight lost even more FFM, whereas those who gained weight either gained FFM or lost it more slowly than the others. Data from the literature confirmed this trend. CONCLUSIONS FFM loss is not inevitable during adulthood-at least up to age 81 y, the oldest age yet studied. The magnitude and direction of the FFM change, be it positive or negative, is strongly influenced by change in body weight.
Migrating SGX Enclaves with Persistent State

Hardware-supported security mechanisms like Intel Software Guard Extensions (SGX) provide strong security guarantees, which are particularly relevant in cloud settings. However, their reliance on physical hardware conflicts with cloud practices, like migration of VMs between physical platforms. For instance, the SGX trusted execution environment (enclave) is bound to a single physical CPU. Although prior work has proposed an effective mechanism to migrate an enclave's data memory, it overlooks the migration of persistent state, including sealed data and monotonic counters; the former risks data loss whilst the latter undermines the SGX security guarantees. We show how this can be exploited to mount attacks, and then propose an improved enclave migration approach guaranteeing the consistency of persistent state. Our software-only approach enables migratable sealed data and monotonic counters, maintains all SGX security guarantees, minimizes developer effort, and incurs negligible performance overhead.
Changes in macronutrient intake among HIV-infected children between 1995 and 2004.

BACKGROUND Nutritional concerns in HIV-infected children have evolved, from wasting to obesity and insulin resistance. However, little is known about the diet of these children during this evolution. OBJECTIVE We analyzed dietary macronutrient intake in HIV-infected children over nearly 10 y. DESIGN HIV-infected children underwent periodic longitudinal nutritional assessments between 1995 and 2004. Sex-specific initial and final means or proportions and time trends in macronutrient intakes were estimated with regression analyses. RESULTS Three hundred thirty nutritional records from 49 males and 411 from 67 females were analyzed. Caloric intake exceeded the estimated energy requirement (EER) for ideal body weight in 1995 by 62% for males and 39% for females and decreased by 3% of the EER per year in males (P = 0.02) and by 2% in females (P = 0.004). In 2004, caloric intake still remained >19% above the EER in both groups. Protein intake was nearly 400% of the recommended dietary allowance (RDA) for ideal body weight in 1995 among both males and females and decreased by 13% of the RDA per year for males (P = 0.001) and by 21% per year for females (P < 0.001). However, daily protein intake still exceeded the RDA by >60% in both groups in 2004. Females consumed more energy from carbohydrates (P = 0.05) and sugar (P = 0.10) and less from monounsaturated (P = 0.04), polyunsaturated (P = 0.05), saturated (P = 0.03), and total (P = 0.10) fat in 2004 than in 1995. CONCLUSION Excessive caloric intake and a shift in dietary composition toward carbohydrates in females suggest that continued monitoring of diet in HIV-infected children is important to avoid increased nutritional risk.
Effect of gluten-free diet on bone mineral content in growing patients with celiac disease.

Osteoporosis is a complication of celiac disease in adulthood, but little is known about the influence of the disease on bone mineralization in children. In the present study we evaluated radial bone mineral content (BMC) in celiac children and adolescents at diagnosis and after they consumed a gluten-free diet (GFD). The BMC values of 33 celiac patients at diagnosis were significantly lower than those of 255 control subjects (P < 0.001). There was no difference between diabetic and non-diabetic celiac patients. In 14 patients the BMC increased significantly (P < 0.05, ANCOVA) after 1.28 y of GFD. In these patients the mean annual BMC increment was 0.07 g/cm, significantly greater (P < 0.05) than the increment of normal growing children (0.05 g.cm-1.y-1). Our data indicate that although osteoporosis complicates celiac disease during childhood and adolescence, GFD alone is able to remarkably improve bone mineralization.
Angiotensin II and mechanical stretch induce production of tumor necrosis factor in cardiac fibroblasts.

To determine whether ANG II as well as mechanical stress affect the production of tumor necrosis factor (TNF) in the heart, neonatal rat cardiac myocytes and fibroblasts were cultured separately and treated for 6 h with ANG II, lipopolysaccharide (LPS), or cyclic mechanical stretch. LPS induced the production of TNF in cardiac myocytes and fibroblasts. However, TNF synthesis in fibroblasts was 20- to 40-fold higher than in myocytes. ANG II (≥10-8 M) and mechanical stretch stimulated the production of TNF in cardiac fibroblasts but not in myocytes. Furthermore, both ANG II and LPS increased the expression of TNF-α mRNA in cardiac fibroblasts. Isoproterenol inhibited both LPS- and ANG II-induced production of TNF in cardiac fibroblasts with increasing intracellular cAMP level. Moreover, both isoproterenol and dibutyryl cAMP inhibited LPS-induced TNF-α mRNA expression. Thus activation of the renin-angiotensin system, as well as mechanical stress, can stimulate production of TNF in cardiac fibroblasts. Furthermore, β-adrenergic receptors may be responsible for the regulation of TNF synthesis at the transcriptional level by elevating intracellular cAMP.
Integration of speed and time for estimating time to contact

Significance Existing theories suggest that reacting to dynamic stimuli is made possible by relying on internal estimates of kinematic variables. For example, to catch a bouncing ball the brain relies on the position and speed of the ball. However, when kinematic information is unreliable one may additionally rely on temporal cues. In the bouncing ball example, when visibility is low one may benefit from the temporal information provided by the sound of the bounces. Our work provides evidence that humans rely on such temporal cues and automatically integrate them with kinematic information to optimize their performance. This finding reveals a hitherto unappreciated role of the brain’s timing mechanisms in sensorimotor function. To coordinate movements with events in a dynamic environment the brain has to anticipate when those events occur. A classic example is the estimation of time to contact (TTC), that is, when an object reaches a target. It is thought that TTC is estimated from kinematic variables. For example, a tennis player might use an estimate of distance (d) and speed (v) to estimate TTC (TTC = d/v). However, the tennis player may instead estimate TTC as twice the time it takes for the ball to move from the serve line to the net line. This latter strategy does not rely on kinematics and instead computes TTC solely from temporal cues. Which of these two strategies do humans use to estimate TTC? Considering that both speed and time estimates are inherently uncertain and the ability of the human brain to combine different sources of information, we hypothesized that humans estimate TTC by integrating speed information with temporal cues. We evaluated this hypothesis systematically using psychophysics and Bayesian modeling. Results indicated that humans rely on both speed information and temporal cues and integrate them to optimize their TTC estimates when both cues are present. These findings suggest that the brain’s timing mechanisms are actively engaged when interacting with dynamic stimuli.
Production and Characterization of Porous C/C Material

In todays rocket combustion chambers extremely high heat loads are apparent. Reducing these loads in combination with a weight reduction of the thrust chambers structural weight can be achieved with transpiration cooling applied to composite carbon/carbon materials (C/C). In the SFB-TRR 40, subproject A5, evaluating this cooling technique is being the set goal. This paper presents the manufacturing process and the material specific characterization. First, the liquid silicon infiltration process (LSI) is being outlined, followed by the description of techniques used for the determination of the open porosity (e) and the Darcian (Kd) and Forchheimer (Kf ) permeability coefficients of these composites. Last are important design parameters, yielding the pressure drop for a certain coolant mass-flow rate. For the porosity, the archimedes principle was applied. The typical porosity of C/C ranges from e = 8 % up to e = 13 %. Kd and Kf were determined by measuring the pressure drop for a set mass-flow rate through a material specimen. From this data, using a least-square fitting technique, the permeability coefficients can be derived. For C/C Kd typically lies in the order of 10−13 and Kf normally in the order of 10−8.
Data-driven metric representing the maturation of preterm EEG

Essential information about early brain maturation can be retrieved from the preterm human electroencephalogram (EEG). This study proposes a new set of quantitative features that correlate with early maturation. We exploit the known early trend in EEG content from intermittent to continuous activity, which changes the line length content of the EEG. The developmental shift can be captured in the line length histogram, which we use to obtain 28 features; 20 histogram bins and 8 other statistical measurements. Using the mutual information, we select 6 features with high correlation to the infant's age. This subset appears promising to detect deviances from normal brain maturation. The presented data-driven index holds promise for developing into a computational EEG index of maturation that is highly needed for overall assessment in the Neonatal Intensive Care Units.
Oxidation of low-density lipoproteins: intraindividual variability and the effect of dietary linoleate supplementation.

Low-density lipoprotein (LDL) oxidation was measured in vitro to determine intraindividual variability and to relate oxidation to linoleic acid enrichment. Intraindividual variability was determined for eight subjects on 3 consecutive days after 14 d on a fixed diet. Coefficients of variation were 7.49 +/- 1.50%, 6.58 +/- 1.16%, and 4.58 +/- 0.77% for oxidation rate, lag time, and diene concentration, respectively. In the second study 12 normolipidemic men consumed a daily diet supplement containing 35 g linoleate-rich oil in one period and 35 g oleate-rich oil in the other period (2 x 3 wk crossover). LDL oxidized faster after the linoleate diet than after the oleate diet (mean +/- SE: 16.42 +/- 0.85 and 13.16 +/- 0.68 nmol diene.mg LDL protein-1.min-1, respectively, P < 0.02) and produced more conjugated diene (416 +/- 12.60 and 379.29 +/- 11.06 nmol/mg protein, respectively, P < 0.05) in proportion to the increase in LDL linoleate (r = 0.698, P < 0.001 and r = 0.618, P < 0.01 for rate and diene concentration, respectively). Lag time before onset of oxidation was not significantly altered by the linoleate-rich diet.
Phenylalanine requirements determined by using L-[1-14C]phenylalanine in neonatal piglets receiving total parenteral nutrition supplemented with tyrosine.

The definition of amino acid requirements for neonates receiving total parenteral nutrition (TPN) is critical for the further improvement of this nutritional regimen. In the present study we investigated the kinetics and requirements of phenylalanine and tyrosine in neonatal piglets receiving TPN. Twenty-four 3-d-old male Yorkshire piglets were fitted with external jugular and femoral catheters and maintained on identical TPN formulations for 5 d. Total amino acid, phenylalanine, tyrosine, and energy intakes were 15, 0.61, and 0.51 g. kg-1 . d-1 and 1.1 MJ . kg-1 . d-1, respectively. On day 5, piglets (three per level) were randomly assigned to receive one of eight phenylalanine intakes: 0.2. 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, or 1.2 g. kg-1 . d-1. On day 6, phenylalanine kinetics were measured during a 4-h primed, continuous infusion of L-[1-14C]phenylalanine. Plasma phenylalanine and phenylalanine oxidation were statistically similar for the three lowest phenylalanine intakes and increased thereafter. Crossover regression analysis yielded estimates for the mean requirement and safe phenylalanine intake of 0.45 and 0.48 g . kg-1 . d-1, respectively (equivalent to 30 and 32 mg/g amino acids, respectively), in the presence of excess tyrosine. An inability of piglets to maintain a linear oxidative response at phenylalanine intakes > 0.8 g . kg-1 . d-1 (equivalent to 53 mg/g amino acids) was found. These data represent the first direct estimates of phenylalanine requirements in neonates receiving TPN and demonstrate the use of oxidation techniques for the estimation of amino acid requirements during parenteral nutrition.
Plasma fatty acid composition and depression are associated in the elderly: the Rotterdam Study.

BACKGROUND It has been hypothesized that n-3 polyunsaturated fatty acids (PUFAs) are involved in mood regulation, but epidemiologic evidence for such a link in the general population is lacking. OBJECTIVE This study examined whether community-dwelling elderly persons with depression have a fatty acid composition that is different from that of nondepressed persons. DESIGN We screened 3884 adults aged > or = 60 y for depressive symptoms as part of the Rotterdam Study. Subjects who screened positive had a psychiatric interview to diagnose depressive disorders. All eligible subjects had their blood drawn for measurement of plasma phospholipid concentrations. We compared percentages of n-3 and n-6 PUFAs and their ratios between 264 subjects with depressive symptoms, including 106 subjects with depressive disorders, and 461 randomly selected reference subjects. We also investigated whether atherosclerosis or the inflammatory response as measured by C-reactive protein underlies the relation between fatty acid composition and depression. RESULTS Subjects with depressive disorders had a higher ratio of n-6 to n-3 PUFAs, but differences in individual PUFAs were mostly small. However, depressed subjects with normal CRP concentrations (< 1.5 mg/L) had a substantially altered fatty acid composition; percentages of n-3 PUFAs and ratios of n-6 to n-3 PUFAs were significantly lower and higher, respectively, in subjects with depressive disorders than in control subjects [5.2% compared with 5.9% (P = 0.02) and 7.2 compared with 6.6 (P = 0.01), respectively]. This relation was not due to atherosclerosis. CONCLUSIONS In community-dwelling persons, fatty acid composition is related to depression. Because this relation was not secondary to inflammation, atherosclerosis, or possible confounders, it suggests a direct effect of fatty acid composition on mood.
Regular consumption of NaFeEDTA-fortified fish sauce improves iron status and reduces the prevalence of anemia in anemic Vietnamese women.

BACKGROUND Fish sauce is consumed daily by a large proportion of the Vietnamese population and could therefore be a potentially useful food vehicle for iron-fortification programs. OBJECTIVE We evaluated the efficacy of iron-fortified fish sauce in improving the iron status of anemic women. DESIGN In a randomized, double-masked study of 152 anemic (hemoglobin concentration of 81-119 g/L) women, a meal based on noodles or rice was served 6 d/wk with 10 mL fish sauce containing either 10 mg Fe as NaFeEDTA (iron-fortified group) or no added iron (control group). Concentrations of hemoglobin, serum ferritin (SF), and serum transferrin receptor (TfR) were measured at baseline and after 3 and 6 mo. RESULTS After 6 mo, hemoglobin and SF concentrations were higher and TfR concentrations were lower in the iron-fortified group than in the control group [hemoglobin: 116.3 +/- 8.7 ( +/- SD) compared with 107.6 +/- 11.0 g/L (P < 0.0001); SF: 30.9 (95% CI: 23.4, 40.6) compared with 14.6 (11.3, 19.0) micro g/L (P = 0.0002); TfR: 7.2 (6.4, 7.9) compared with 9.0 (8.1, 9.9) mg/L (P = 0.002)]. The prevalence of iron deficiency (SF < 12 micro g/L or TfR > 8.5 mg/L) and iron deficiency anemia (iron deficiency with hemoglobin < 120 g/L) was lower in the iron-fortified group than in the control group [32.8% compared with 62.5% (P = 0.0005) and 20.3% compared with 58.3% (P < 0.0001), respectively]. CONCLUSIONS Regular consumption of iron-fortified fish sauce significantly reduced the prevalence of iron deficiency anemia in Vietnamese women during the 6-mo intervention. Fortifying fish sauce with iron by using a water-soluble, highly bioavailable compound (NaFeEDTA) is a promising strategy for combating iron deficiency anemia in Vietnam.
Association of body size with outcomes among patients beginning dialysis.

BACKGROUND Although obesity confers an increased risk of mortality in the general population, observational reports on the dialysis population have suggested that obesity is associated with improved survival. These reports have generally not examined extremely high values of body mass index (BMI; in kg/m(2)), survival >1 y, or alternative measures of adiposity. OBJECTIVE We sought to clarify the relation between body size and outcomes among a large cohort of patients beginning dialysis. DESIGN Data on 418 055 patients beginning dialysis between 1 April 1995 and 1 November 2000 were analyzed by using US Renal Data System data. BMI was divided into 8 categories in increments of 3 units, ranging from < 19 to > or =37, and the relation between survival and BMI was examined by using proportional hazards regression with adjustment for demographic, laboratory, and comorbidity data. RESULTS High BMI was associated with increased survival in this cohort, even at extremely high BMI, after adjustment, and over a 2-y average follow-up time. This was true for whites, African Americans, and Hispanics but not for Asians. High BMI was also associated with a reduced risk of hospitalization and a lower rate of mortality in all mortality categories. Alternative estimates of adiposity, including the Benn index and estimated fat mass, yielded similar results, and adjustments for lean body mass did not substantially alter the findings. CONCLUSIONS High BMI is not associated with increased mortality among patients beginning dialysis. This finding does not appear to be a function of lean body mass and, although modified by certain patient characteristics, it is a robust finding.
Recommendations for Increasing Replicability in Psychology †

Replicability of findings is at the heart of any empirical science. The aim of this article is to move the current replicability debate in psychology towards concrete recommendations for improvement. We focus on research practices but also offer guidelines for reviewers, editors, journal management, teachers, granting institutions, and university promotion committees, highlighting some of the emerging and existing practical solutions that can facilitate implementation of these recommendations. The challenges for improving replicability in psychological science are systemic. Improvement can occur only if changes are made at many levels of practice, evaluation, and reward. Copyright © 2013 John Wiley & Sons, Ltd.
Enhancement of immunity in the elderly by dietary supplementation with the probiotic Bifidobacterium lactis HN019.

BACKGROUND The aging process can lead to a decline in cellular immunity. Therefore, the elderly could benefit from safe and effective interventions that restore cellular immune functions. OBJECTIVE We determined whether dietary supplementation with the known immunostimulating probiotic Bifidobacterium lactis HN019 could enhance aspects of cellular immunity in elderly subjects. DESIGN Thirty healthy elderly volunteers (age range: 63-84 y; median: 69 y) participated in a 3-stage dietary supplementation trial lasting 9 wk. During stage 1 (run-in), subjects consumed low-fat milk (200 mL twice daily for 3 wk) as a base-diet control. During stage 2 (intervention), they consumed milk supplemented with B. lactis HN019 in a typical dose (5 x 10(10) organisms/d) or a low dose (5 x 10(9) organisms/d) for 3 wk. During stage 3 (washout), they consumed low-fat milk for 3 wk. Changes in the relative proportions of leukocyte subsets and ex vivo leukocyte phagocytic and tumor-cell-killing activity were determined longitudinally by assaying peripheral blood samples. RESULTS Increases in the proportions of total, helper (CD4(+)), and activated (CD25(+)) T lymphocytes and natural killer cells were measured in the subjects' blood after consumption of B. lactis HN019. The ex vivo phagocytic capacity of mononuclear and polymorphonuclear phagocytes and the tumoricidal activity of natural killer cells were also elevated after B. lactis HN019 consumption. The greatest changes in immunity were found in subjects who had poor pretreatment immune responses. In general, the 2 doses of B. lactis HN019 had similar effectiveness. CONCLUSION B. lactis HN019 could be an effective probiotic dietary supplement for enhancing some aspects of cellular immunity in the elderly.