Miracle-dz/UniFAR-FTUs huggingface dataset:
Disparities of Food Availability and Affordability within Convenience Stores in Bexar County, Texas

The American Diabetes Association (ADA) recommends healthful food choices; however, some geographic areas are limited in the types of foods they offer. Little is known about the role of convenience stores as viable channels to provide healthier foods in our “grab and go” society. The purposes of this study were to (1) identify foods offered within convenience stores located in two Bexar County, Texas, ZIP Codes and (2) compare the availability and cost of ADA-recommended foods including beverages, produce, grains, and oils/fats. Data were analyzed from 28 convenience store audits performed in two sociodemographically diverse ZIP Codes in Bexar County, Texas. Chi-squared tests were used to compare food availability, and t-tests were used to compare food cost in convenience stores between ZIP Codes. A significantly larger proportion of convenience stores in more affluent areas offered bananas (χ 2 = 4.17, P = 0.003), whole grain bread (χ 2 = 8.33, P = 0.004), and baked potato chips (χ 2 = 13.68, P < 0.001). On average, the price of diet cola (t = −2.12, P = 0.044) and certain produce items (e.g., bananas, oranges, tomatoes, broccoli, and cucumber) was significantly higher within convenience stores in more affluent areas. Convenience stores can play an important role to positively shape a community's food environment by stocking healthier foods at affordable prices.
The Onset of Gravisensitivity in the Embryonic Root of Flax1[OA]

Vertical orientation of emerging roots typically is the first response of plants to gravity. Although root gravitropism has been studied extensively, no conclusive data on the onset of gravisensing exist. We determined the inception of gravisensitivity in flax (Linum usitatissimum) roots by clinorotating germinating seeds after various periods of static orientation (gravistimulation) of imbibed seeds. Gravitropic competency was established about 8 h after imbibition, 11 h prior to germination. The time was determined based on 50% of the newly emerged roots curving in the direction of the gravity vector during static imbibition, despite subsequent clinorotation. The threshold value was affected by the orientation of the seeds. Upward orientation of the micropyle/radicle reduced the number of graviresponding roots to about one-half. Prolonged clinorotation weakened the graviresponse. Gravisensing was accompanied by the development of amyloplasts, but the actin cytoskeleton was not involved because imbibition in Latrunculin B did not affect the onset of gravisensitivity or germination, and the development of F-actin in untreated controls was observed only after the onset of gravisensitivity.
Ligature instabilities in the perceptual organization of shape

Although the classical Blum skeleton has long been considered unstable, many have attempted to alleviate this defect through pruning. Unfortunately, these methods have an arbitrary basis, and, more importantly, they do not prevent internal structural alterations due to slight changes in an object's boundary. The result is a relative lack of development of skeleton representations for indexing object databases, despite a long history. Here we revisit a subset of the skeleton-called ligature by Blum-to demonstrate how the topological sensitivity of the skeleton can be eliminated. We relate ligature to a natural growth principle to provide an account of the perceptual parts of shape.
Calcium and magnesium distribution in groundwater and food substances in parts of Central plateau state, Northcentral Nigeria.

Adequate intakes of calcium and magnesium in water have been found to reduce the risk of some diseases (cardiovascular, diabetes, rectal cancer, neurological disturbances and pre-eclemsia in women) especially where adequate amount of these ions are not supplemented in foods. The dependence on waters abstracted directly from hand dug wells and other sources without any form of treatment and or regulation are of great concern to the health of humans and animals. Groundwater abstracted from hand dug wells and hand pumps without any form of treatment, are the main sources of water supply for rural inhabitants of central Plateau State, Nigeria. The aim of this study was to map out the distribution of calcium and magnesium using GIS in parts of central Plateau State. Multivariate analysis to explain the variation of these ions in aquifers of the area was also employed. Four rock types constitute the aquifers from which water is abstracted for drinking (migmatite, biotite granite, granite gneiss and basalts) exhibiting variations in their contents of calcium and magnesium. Averagely, content of calcium and magnesium are higher in the migmatite compared to the other rock types. Generally the total content of calcium in both foods and water do not meet the recommended daily intake of 1000 mg for an adult. Although, magnesium is quite low in 90% of water points, the daily recommended daily intake of 200 – 400 mg for adult is supplemented in (Zea Mays, and sorghum) staple foods consumed daily by every household in the area. There is the need for calcium supplements in the area to meet the recommended daily intake.
Generating structured Profiles of Linked Data Graphs

While there exists an increasingly large number of Linked Data, metadata about the content covered by individual datasets is sparse. In this paper, we introduce a processing pipeline to automatically assess, annotate and index available linked datasets. Given a minimal description of a dataset from the DataHub, the process produces a structured RDF-based description that includes information about its main topics. Additionally, the generated descriptions embed datasets into an interlinked graph of datasets based on shared topic vocabularies. We adopt and integrate techniques for Named Entity Recognition and automated data validation, providing a consistent workflow for dataset profiling and annotation. Finally, we validate the results obtained with our tool.
Integrating dynamics into motion planning for humanoid robots

This paper proposes an whole body motion planning method for humanoid robots in which dynamics is integrated. The method consists of two stages. A collision-free and statically stable path is planned in the first stage and it is transformed into a dynamically stable trajectory in the second stage. Contributions of the method is summarized as follows. (1) A local method plans a C1 path while avoiding collisions between non-strictly convex objects. (2) The second stage gives the minimum time trajectory by time parameterization under dynamic balance constraints. (3) Any path reshaping for recovering collision-freeness is not required since the second stage doesnpsilat change shape of the path. Effectiveness of the method is examined by applying it to scenarios of a humanoid robot HRP-2.
Meiotic Drive Impacts Expression and Evolution of X-Linked Genes in Stalk-Eyed Flies

Although sex chromosome meiotic drive has been observed in a variety of species for over 50 years, the genes causing drive are only known in a few cases, and none of these cases cause distorted sex-ratios in nature. In stalk-eyed flies (Teleopsis dalmanni), driving X chromosomes are commonly found at frequencies approaching 30% in the wild, but the genetic basis of drive has remained elusive due to reduced recombination between driving and non-driving X chromosomes. Here, we used RNAseq to identify transcripts that are differentially expressed between males carrying either a driving X (XSR) or a standard X chromosome (XST), and found hundreds of these, the majority of which are X-linked. Drive-associated transcripts show increased levels of sequence divergence (dN/dS) compared to a control set, and are predominantly expressed either in testes or in the gonads of both sexes. Finally, we confirmed that XSR and XST are highly divergent by estimating sequence differentiation between the RNAseq pools. We found that X-linked transcripts were often strongly differentiated (whereas most autosomal transcripts were not), supporting the presence of a relatively large region of recombination suppression on XSR presumably caused by one or more inversions. We have identified a group of genes that are good candidates for further study into the causes and consequences of sex-chromosome drive, and demonstrated that meiotic drive has had a profound effect on sequence evolution and gene expression of X-linked genes in this species.
Dominant factors affecting temperature rise in simulations of human thermoregulation during RF exposure

Numerical models of the human thermoregulatory system can be used together with realistic voxel models of the human anatomy to simulate the body temperature increases caused by the power absorption from radio-frequency electromagnetic fields. In this paper, the Pennes bioheat equation with a thermoregulatory model is used for calculating local peak temperatures as well as the body-core-temperature elevation in a realistic human body model for grounded plane-wave exposures at frequencies 39, 800 and 2400 MHz. The electromagnetic power loss is solved by the finite-difference time-domain (FDTD) method, and the discretized bioheat equation is solved by the geometric multigrid method. Human thermoregulatory models contain numerous thermophysiological and computational parameters—some of which may be subject to considerable uncertainty—that affect the simulated core and local temperature elevations. The goal of this paper is to find how greatly the computed temperature is influenced by changes in various modelling parameters, such as the skin blood flow rate, models for vasodilation and sweating, and clothing and air movement. The results show that the peak temperature rises are most strongly affected by the modelling of tissue blood flow and its temperature dependence, and mostly unaffected by the central control mechanism for vasodilation and sweating. Almost the opposite is true for the body-core-temperature rise, which is however typically greatly lower than the peak temperature rise. It also seems that ignoring the thermoregulation and the blood temperature increase is a good approximation when the local 10 g averaged specific absorption rate is smaller than 10 W kg−1.
Surrogate Modeling of Computer Experiments With Different Mesh Densities

This article considers deterministic computer experiments with real-valued tuning parameters which determine the accuracy of the numerical algorithm. A prominent example is finite-element analysis with its mesh density as the tuning parameter. The aim of this work is to integrate computer outputs with different tuning parameters. Novel nonstationary Gaussian process models are proposed to establish a framework consistent with the results in numerical analysis. Numerical studies show the advantages of the proposed method over existing methods. The methodology is illustrated with a problem in casting simulation. Supplementary material for this article is available online.
Phonetic dimensions of intonational categories - the case of l+h* and h*

ToBI, in its conception, was an attempt to describe intonation in terms of phonological categories. An effect of the success of ToBI in doing this has been to make it standard to try to characterise all intonational phonological distinctions in terms of ToBI distinctions, i.e. segmental alignment of pitch targets and pitch height as either High or Low. Here we report a series of experiments which attempted to do this, linking two supposed phonological categories, theme and rheme accents, to two controversial ToBI pitch accents L+H* and H* respectively. Our results suggest a reanalysis of the dimensions of phonological intonational distinctions. It is suggested that there are three layers affecting the intonational contour: global extrinsic, local extrinsic and intrinsic; and the theme-rheme distinction may lie in the local extrinsic layer. It is the similarity both of the phonetic effects and the semantic information conveyed by the last two layers that has led to the confusion in results such as those reported here.
Spectral domain optical coherence tomography of multi-MHz A-scan rates at 1310 nm range and real-time 4D-display up to 41 volumes/second

An ultrafast frequency domain optical coherence tomography system was developed at A-scan rates between 2.5 and 10 MHz, a B-scan rate of 4 or 8 kHz, and volume-rates between 12 and 41 volumes/second. In the case of the worst duty ratio of 10%, the averaged A-scan rate was 1 MHz. Two optical demultiplexers at a center wavelength of 1310 nm were used for linear-k spectral dispersion and simultaneous differential signal detection at 320 wavelengths. The depth-range, sensitivity, sensitivity roll-off by 6 dB, and axial resolution were 4 mm, 97 dB, 6 mm, and 23 μm, respectively. Using FPGAs for FFT and a GPU for volume rendering, a real-time 4D display was demonstrated at a rate up to 41 volumes/second for an image size of 256 (axial) × 128 × 128 (lateral) voxels.
A Probabilistic Answer Type Model

All questions are implicitly associated with an expected answer type. Unlike previous approaches that require a predefined set of question types, we present a method for dynamically constructing a probability-based answer type model for each different question. Our model evaluates the appropriateness of a potential answer by the probability that it fits into the question contexts. Evaluation is performed against manual and semiautomatic methods using a fixed set of answer labels. Results show our approach to be superior for those questions classified as having a miscellaneous answer type.
Pattern and Determinants of Gestational Weight Gain an Important Predictor of Infant Birth Weight in a Developing Country

The study aimed to determine correlates of gestational weight gain and infant birth weight of pregnant women attending antenatal clinics in public primary health care facilities in lfe Central and East Local Government Areas of Osun State, Nigeria. Over 1000 women were recruited during booking and antenatal clinic and followed up till delivery. Chi square was used in the bivariate analysis of association between gestational weight gain, pre pregnancy BMI and demographic characteristics. The correlates of gestational weight gain and infant birth weight were determined by linear regression analysis. Eight percent are underweight, 10.3% are overweight or obese, 78% had a weight gain less than 7kg and 0.5% had a weight gain above 11.5kg. Ninety seven percent gained less than recommended weight, only 3% of the women gained the recommended weight for their pre pregnant BMI mostly the obese women. Twenty eight percent of the women had infant weight within normal (2.5kg and above). The infant weight increases with the gestational age, maternal age and parity but decreases with gestational weight gain though not significant. Maternal age and parity were significant predictors of gestational weight gain and pre pregnancy BMI was a significant predictor of infant birth weight. The gestational weight gain and infant weight reduces as the pre pregnant BMI increases. Most of the women had low birth weight babies. There is a need to educate mothers on good weight before conception in order to improve birth outcome in view of other factors not looked into in the present study.
Sons as sole caregivers for their elderly parents. How do they cope?

OBJECTIVE To examine the experiences of men who are sole caregivers for their elderly parents. DESIGN Semistructured in-depth interviews. SETTING Family practice clinic attached to a large tertiary care centre in north central Toronto. PARTICIPANTS A convenience sample of 10 men who identified themselves as sole caregivers in that they had no particular women assisting them with caregiving. METHOD Interviews were analyzed by standard qualitative methods. MAIN FINDINGS Emerging themes were the spectrum of caregiving, the experience of caregiving, and the use of formal support systems. Scope of care varied from very little to total care, including personal care. Participants described positive and negative aspects of and the nature of their relationships with those for whom they cared. Avoiding institutionalization was seen as positive; effects on work and social life were negative. Use of more than homemaking services was associated with previous hospitalization; participants complained about difficulties accessing services. CONCLUSIONS The nature of sons' relationships with their parents and the amount of time they have available can predict how much caregiving they can undertake. Information about community support services is not readily accessible to these men.
MAMMARY GLAND ADENOCARCINOMA IN A MALE BORNEAN ORANGUTAN (PONGO PYGMAEUS)

Abstract An adult male Bornean orangutan (Pongo pygmaeus) was diagnosed with invasive, poorly differentiated grade 9/9 mammary gland adenocarcinoma from a subcutaneous mass that was surgically removed during a routine preventative health examination. The tumor was tested for estrogen and progesterone receptors, human epidermal growth factor receptor 2 (HER2), and HER2 fluorescence in situ hybridization (HER2 FISH). Whole blood was tested for breast cancer 1 (BRCA1) and breast cancer 2 (BRCA2) genes. The orangutan was treated orally with two common human breast cancer drugs; tamoxifen and anastrozole. The orangutan lived for 4.5 yr postdetection, dying from an unrelated cause. This is the first reported case of mammary gland adenocarcinoma in a male great ape.
Identifying P2P Network Activities on Encrypted Traffic

Peer-to-Peer (P2P) traffic has always been a dominant portion of current Internet traffic and become more and more difficult to manage for Internet Service Producers (ISP) and network administrators. Although many methods have been proposed to classify different types of P2P applications and achieved satisfied performance, research on identifying network activities of a certain P2P application is still lacking to the best of our knowledge, which is urgently required in the context of forensic investigation for illegal P2P applications. In this paper, a novel approach based on Hidden Markov Model is proposed to identify network activities on the encrypted traffic, based on analysis of the time series characteristics and statistical properties of network traffic. After presenting a general model of network activities, Team Viewer is selected as a case study to verify the effectiveness of the approach to identify different activities. According to experiments using real network traces, our approach proves to be effective in identifying different activities of a P2P application with a high true positive 99.1% and low negligible false positive 3.6%.
Loyola eCommons Loyola eCommons

Background . A pangenome is the collection of all genes found in a set of related genomes. For microbes, these genomes are often different strains of the same species, and the pangenome offers a means to compare gene content variation with differences in phenotypes, ecology, and phylogenetic relatedness. Though most frequently applied to bacteria, there is growing interest in adapting pangenome analysis to bacteriophages. However, working with phage genomes presents new challenges. First, most phage families are under-sampled, and homologous genes in related viruses can be difficult to identify. Second, homing endonucleases and intron-like sequences may be present, resulting in fragmented gene calls. Each of these issues can reduce the accuracy of standard pangenome analysis tools. Methods . We developed an R pipeline called Rephine.r that takes as input the gene clusters produced by an initial pangenomics workflow. Rephine.r then proceeds in two primary steps. First, it identifies three common causes of fragmented gene calls: (1) indels creating early stop codons and new start codons; (2) interruption by a selfish genetic element; and (3) splitting at the ends of the reported genome. Fragmented genes are then fused to create new sequence alignments. In tandem, Rephine.r searches for distant homologs separated into different gene families using Hidden Markov Models. Significant hits are used to merge families into larger clusters. A final round of fragment identification is then run, and results may be used to infer single-copy core genomes and phylogenetic trees. Results . We applied Rephine.r to three well-studied phage groups: the Tevenvirinae (e.g., T4), the Studiervirinae (e.g., T7), and the Pbunaviruses (e.g., PB1). In each case, Rephine.r recovered additional members of the single-copy core genome and increased the overall bootstrap support of the phylogeny. The Rephine.r pipeline is provided through GitHub (https://www.github.com/coevoeco/Rephine.r) as a single script for automated analysis and with utility functions to assist in building single-copy core genomes and predicting the sources of fragmented genes
Classical-quantum arbitrarily varying wiretap channel—A capacity formula with Ahlswede Dichotomy—Resources

We establish the Ahlswede Dichotomy for arbitrarily varying classical-quantum wiretap channels, i.e., either the deterministic secrecy capacity of an arbitrarily varying classical-quantum wiretap channel is zero, or it equals its randomness assisted secrecy capacity. We analyze the secrecy capacity of arbitrarily varying classical-quantum wiretap channels when the sender and the receiver use various resources. It turns out that having randomness, common randomness, and correlation as resources are very helpful for achieving a positive deterministic secrecy capacity of arbitrarily varying classical-quantum wiretap channels. We prove the phenomenon “super-activation” for arbitrarily varying classical-quantum wiretap channels, i.e., two arbitrarily varying classical-quantum wiretap channels, both with zero deterministic secrecy capacity, if used together allow perfect secure transmission.
Executive and semantic processes in reappraisal of negative stimuli: insights from a meta-analysis of neuroimaging studies

Neuroimaging investigations have identified the neural correlates of reappraisal in executive areas. These findings have been interpreted as evidence for recruitment of controlled processes, at the expense of automatic processes when responding to emotional stimuli. However, activation of semantic areas has also been reported. The aim of the present work was to address the issue of the importance of semantic areas in emotion regulation by comparing recruitment of executive and semantic neural substrates in studies investigating different reappraisal strategies. With this aim, we reviewed neuroimaging studies on reappraisal and we classified them in two main categories: reappraisal of stimuli (RS) and reappraisal via perspective taking (RPT). We applied a coordinate-based meta-analysis to summarize the results of fMRI studies on different reappraisal strategies. Our results showed that reappraisal, when considered regardless of the specific instruction used in the studies, involved both executive and semantic areas of the brain. When considering different reappraisal strategies separately, in contrast, we found areas associated with executive function to be prominently recruited by RS, even if also semantic areas were activated. Instead, in RPT the most important clusters of brain activity were found in parietal and temporal semantic areas, without significant clusters in executive areas. These results indicate that modulation of activity in semantic areas may constitute an important aspect of emotion regulation in reappraisal, suggesting that semantic processes may be more important to understand the mechanism of emotion regulation than previously thought.
Estimates of Creditors' Discount Rates in Court-Supervised Reorganisation Decisions

Using data from reorganization proposals filed by bankrupt Canadian firms, we estimate the discount rate implicit in the creditors’ reorganization decision. Using two approaches, a grid-search and an optimization algorithm, we estimate the implicit monthly discount rate in reorganization to be around 5 percent, which corresponds to an annual discount rate of 87 percent.