Miracle-dz/UniFAR-FTUs huggingface dataset:
Inhibitory Effects of Selected Antituberculosis Drugs on Common Human Hepatic Cytochrome P450 and UDP-glucuronosyltransferase Enzymes

The comorbidities of tuberculosis and diseases such as HIV require long-term treatment with multiple medications. Despite substantial in vitro and in vivo information on effects of rifampicin and isoniazid on human CYPs, there is limited published data regarding the inhibitory effects of other anti-TB drugs on human CYPs and UGTs. The inhibitory effects of five first-line anti-TB drugs (isoniazid, rifampicin, pyrazinamide, ethambutol, and rifabutin), and the newly approved bedaquiline, were evaluated for six common human hepatic UGT enzymes (UGT1A1, 1A4, 1A6, 1A9, 2B7 and 2B15) in vitro using HLMs. Pyrazinamide, ethambutol, rifabutin and bedaquiline were also studied for their inhibitory effects on eight of the most common human CYP enzymes (CYP1A2, 2B6, 2C8, 2C9, 2C19, 2D6, 2E1 and 3A). Rifabutin inhibited multiple CYPs to varying degrees in vitro, but with all IC50 values exceeding 25 µM. Rifabutin and rifampicin also inhibited several human UGTs including UGT1A4. The Ki value for rifabutin on human hepatic UGT1A4 was 2 μM. Finally, the six anti-TB drugs produced minimal inhibition of acetaminophen glucuronidation in vitro. Overall, the findings do not raise major concerns regarding metabolic inhibition of human hepatic CYPs and UGTs by the tested anti-TB drugs.
Detection and characterization of group A rotaviruses in children hospitalized with acute gastroenteritis in Norway, 2006–2008

To assess the genetic diversity of rotavirus strains in Norway, the distribution of rotavirus genotypes was studied in children admitted to hospital with acute gastroenteritis. The detection of rotavirus in stool samples was compared using an enzyme‐linked immunosorbent assay (ELISA), an immunochromatographic test and RT‐PCR. Children <5 years of age admitted to hospital with diarrhea in three large hospitals were enrolled prospectively from March 2006 to February 2008. Rotavirus was detected in 58% of the children by the immunochromatographic test, in 63% by ELISA and 72% by RT‐PCR. A total of 219 (70%) rotavirus isolates were characterized in order to determine the genotype. The predominant G types included G1 (53%), G9 (16%), and G3 (13%), and the frequency of G3 varied more than G9 between seasons (8–20%). The P[8] genotype was identified in 188 (86%) of samples, and the globally common genotype combinations G1P[8], G2P[4], G3P[8], G4P[8], and G9P[8] accounted together for >80% of infection. No unusual rotavirus strains were detected, and only four samples contained mixed infections. This study demonstrates that ELISA has similar specificity but lower sensitivity compared to RT‐PCR. The immunochromatographic test had the lowest sensitivity and specificity compared to the other assays. Rotaviruses causing severe gastroenteritis leading to hospitalization of children <5 years of age in Norway include the common genotypes, however, a considerable geographical and seasonal variation was observed in the distribution of these genotypes. These data may be important for assessing the need for introducing rotavirus vaccines into immunization programs in Norway. J. Med. Virol. 81:1839–1844, 2009. © 2009 Wiley‐Liss, Inc.
A Review of Conductive Metal Nanomaterials as Conductive, Transparent, and Flexible Coatings, Thin Films, and Conductive Fillers: Different Deposition Methods and Applications

With ever-increasing demand for lightweight, small, and portable devices, the rate of production of electronic and optoelectronic devices is constantly increasing, and alternatives to the current heavy, voluminous, fragile, conductive and transparent materials will inevitably be needed in the future. Conductive metal nanomaterials (such as silver, gold, copper, zinc oxide, aluminum, and tin) and carbon-based conductive materials (carbon nanotubes and graphene) exhibit great promise as alternatives to conventional conductive materials. Successfully incorporating conductive nanomaterials into thin films would combine their excellent electrical and optical properties with versatile mechanical characteristics superior to those of conventional conductive materials. In this review, the different conductive metal nanomaterials are introduced, and the challenges facing methods of thin film deposition and applications of thin films as conductive coatings are investigated.
Heterogeneous distribution of myocardial steatosis—An ex vivo evaluation

Myocardial fat accumulation could occur in diseased hearts. The degree of heterogeneity is unknown because accurate assessment is difficult using conventional proton magnetic resonance spectroscopy techniques in a beating heart. The purpose of this study was to characterize the distribution of intramyocellular lipid content and to determine its association with disease characteristics. Proton magnetic resonance spectroscopy was performed on formalin‐fixed slices of human hearts at various circumferential locations (N = 55). Twenty‐nine percent of the hearts had the highest fat content measured in the septum, followed by posterior (27%), lateral (26%), and anterior (18%) wall. Age was significantly correlated with the mean fat percentages (r2 = 0.12, P = 0.007). Those who died from cardiovascular disease demonstrated significantly higher and more heterogeneous fat distribution than those who did not (1.62% ± 1.1% vs. 0.59% ± 0.4%, P = 0.002). In summary, septal fat content is representative of mean fat percentage. Fat content increases with age; fat distribution may be heterogeneous when associated with cardiovascular disease. Magn Reson Med, 2012. © 2012 Wiley Periodicals, Inc.
Low-Phase Noise Clock Distribution Network Using Rotary Traveling-Wave Oscillators and Built-In Self-Test Phase Tuning Technique

This brief describes a built-in self-test (BIST) technique used to verify and tune the timing integrity of a clock distribution system implemented with injection-locked rotary traveling-wave oscillators (RTWOs). The die is fabricated in a 130-nm CMOS process and occupies 4.4 mm × 2.25 mm and is limited by the outer diameter of the RTWOs, leaving internal space for other circuits. The BIST circuits take a chip area of only 0.025 mm2. The measured frequency tuning range of the RTWOs is from 1.7 to 2.0 GHz. The measured RTWO phase tuning range is 58.56° with a worst case 0.34° phase tuning resolution. The injection-locked clock multiplication and distribution network achieves a single-sideband integrated RMS jitter of 66.8 fs from 10-kHz to 40-MHz offset frequencies at 2.04-GHz output. The BIST circuit allows testing of the integrity of the clock distribution system at speed by determining if the system clock skew can be tolerated or needs adjustment. To the authors' knowledge, the implementation of this BIST technique to determine clock integrity of an injection-locked clock distribution network has not been explored previously.
The Sun ’ s Total Irradiance : Cycles , Trends and Related Climate Change Uncertainties since 1976

A composite record of the Sun’s total irradiance compiled from measurements made by five independent space-based radiometers since 1978 exhibits a prominent 11year cycle with similar levels during 1986 and 1996, the two most recent minimum epochs of solar activity. This finding contradicts recent assertions of a 0.04% irradiance increase from the 1986 to 1996 solar minima and suggests that solar radiative output trends contributed little of the 0.2C increase in the global mean surface temperature in the past decade. Nor does our 18-year composite irradiance record support a recent upward irradiance trend inferred from solar cycle length, a parameter used to imply a close linkage in the present century between solar variability and climate
Design and Analysis of High Gain Low Power CMOS Comparator

The comparator is the most significant component of the analog-to-digital converter, voltage regulator, switching circuits, communication blocks etc. Depending on the various design schemes, comparator performance varied upon target applications. At present, low power, high gain, area efficient and high-speed comparator designed methods are necessary for complementary metal oxide semiconductor (CMOS) industry. In this research, a low power and high gain CMOS comparator are presented which utilized two-stage differential input stages with replication of DC current source to achieve higher gain, higher phase margin, higher bandwidth, and lower power consumption. The simulated results showed that, by using a minimum power supply of 1.2 V, the comparator could generate higher gain 77.45 dB with a phase margin of 60.08°. Moreover, the modified design consumed only 2.84 µW of power with a gain bandwidth of 30.975 MHz. In addition, the chip layout area of the modified comparator is found only 0.0033 mm 2 .
Endothelial caveolar subcellular domain regulation of endothelial nitric oxide synthase

Complex regulatory processes alter the activity of endothelial nitric oxide synthase (eNOS) leading to nitric oxide (NO) production by endothelial cells under various physiological states. These complex processes require specific subcellular eNOS partitioning between plasma membrane caveolar domains and non‐caveolar compartments. Translocation of eNOS from the plasma membrane to intracellular compartments is important for eNOS activation and subsequent NO biosynthesis. We present data reviewing and interpreting information regarding: (i) the coupling of endothelial plasma membrane receptor systems in the caveolar structure relative to eNOS trafficking; (ii) how eNOS trafficking relates to specific protein–protein interactions for inactivation and activation of eNOS; and (iii) how these complex mechanisms confer specific subcellular location relative to eNOS multisite phosphorylation and signalling. Dysfunction in the regulation of eNOS activation may contribute to several disease states, in particular gestational endothelial abnormalities (pre‐eclampsia, gestational diabetes etc.), that have life‐long deleterious health consequences that predispose the offspring to develop hypertensive disease, Type 2 diabetes and adiposity.
Population dynamics of cocirculating swine influenza A viruses in the United States from 2009 to 2012

Understanding the ecology and evolution of influenza A viruses (IAV) in mammalian hosts is critical to reduce disease burden in production animals and lower zoonotic infection risk in humans. Recent advances in influenza surveillance in US swine populations allow for timely epidemiological, phylogenetic, and virological analyses that monitor emergence of novel viruses and assess changes in viral population dynamics.
An Oblivious Approach to Parallel Algorithms ∗

This extended abstract describes my dissertation work undertaken at the University of Padova under the supervision of Prof. A. Pietracaprina. My work has focused on the development of network-oblivious algorithms, that is, parallel algorithms that can run unchanged yet efficiently on a variety of machines characterized by different degrees of parallelism and communication capabilities. Also, I have studied the limitations of the cache-oblivious and network-oblivious approaches.
Effect of a single 30 min UMTS mobile phone‐like exposure on the thermal pain threshold of young healthy volunteers

One of the most frequently investigated effects of radiofrequency electromagnetic fields (RF EMFs) on the behavior of complex biological systems is pain sensitivity. Despite the growing body of evidence of EMF‐induced changes in pain sensation, there is no currently accepted experimental protocol for such provocation studies for the healthy human population. In the present study, therefore, we tested the effects of third generation Universal Mobile Telecommunications System (UMTS) RF EMF exposure on the thermal pain threshold (TPT) measured on the surface of the fingers of 20 young adult volunteers. The protocol was initially validated with a topical capsaicin treatment. The exposure time was 30 min and the genuine (or sham) signal was applied to the head through a patch antenna, where RF EMF specific absorption rate (SAR) values were controlled and kept constant at a level of 1.75 W/kg. Data were obtained using randomized, placebo‐controlled trials in a double‐blind manner. Subjective pain ratings were tested blockwise on a visual analogue rating scale (VAS). Compared to the control and sham conditions, the results provide evidence for intact TPT but a reduced desensitization effect between repeated stimulations within the individual blocks of trials, observable only on the contralateral side for the genuine UMTS exposure. Subjective pain perception (VAS) data indicated marginally decreased overall pain ratings in the genuine exposure condition only. The present results provide pioneering information about human pain sensation in relation to RF EMF exposure and thus may contribute to cover the existing gap between safety research and applied biomedical science targeting the potential biological effects of environmental RF EMFs. Bioelectromagnetics. 34:530–541. © 2013 Wiley Periodicals, Inc.
TREATMENT OF WILMS TUMOR: A Report from the Turkish Pediatric Oncology Group (TPOG)

Aim: To standardize diagnosis and treatment of childhood Wilms tumor (WT) in Turkey. Methods and patients: Between 1998 and 2006, WT patients were registered from 19 centers. Patients <16 years with unilateral WT whose treatment started in first postoperative 3 weeks were included. Treatments were stage I favorable (FH) and unfavorable histology (UH) patients, VCR + Act-D; stage IIA FH, VCR + Act-D; stage IIB FH, VCR + Act-D + radiotherapy (RT); stage III–IV FH, VCR + Act-D + adriamycin (ADR) + RT; stages II–IV UH tumors, VCR + Act-D + ADR + etoposide + RT. Results: 165/254 registered cases were eligible (bilateral, 5.9%) [median age 3.0 years; M/F: 0.99; 50/165 cases ≤2 years]. 9.7% cases had UH tumors. Disease stages were stage I 23.6%; IIA 36.4%; IIB 5.5%; III 22.4%; IV 12.1%. Cases >2 years had significantly more advanced disease. 1/11 cases with recurrent disease died; 2/165 had progressive disease, 2/165 had secondary cancers, and all 4 died. In all cases 4-year OS and EFS were 92.8 and 86.5%, respectively. Both OS and EFS were significantly worse in stage IV. Conclusions: Despite problems in patient management and follow-up, treatment results were encouraging in this first national experience with a multicentric study in pediatric oncology. Revisions and modifications are planned to further improve results and minimize short- and long-term side effects.
Ras signalling in pathogenic yeasts

The small GTPase Ras acts as a master regulator of growth, stress response and cell death in eukaryotic cells. The control of Ras activity is fundamental, as highlighted by the oncogenic properties of constitutive forms of Ras proteins. Ras also plays a crucial role in the pathogenicity of fungal pathogens where it has been found to regulate a number of adaptions required for virulence. The importance of Ras in fungal disease raises the possibility that it may provide a useful target for the development of new treatments at a time when resistance to available antifungals is increasing. New findings suggest that important regulatory sequences found within fungal Ras proteins that are not conserved may prove useful in the development of new antifungals. Here we review the roles of Ras protein function and signalling in the major human yeast pathogens Candida albicans and Cryptococcus neoformans and discuss the potential for targeting Ras as a novel approach to anti-fungal therapy.
Quality and Rigour of Action Research in Information Systems

This paper discusses nature of action research, and its particular strengths in disciplines such as information systems (IS). However concerns are raised about the quality and rigour of the conduct and reporting of action research studies. Criteria for quality and rigour of qualitative research generally, and for action research in particular, are discussed and analysed. These then form the basis of a framework put forward to guide potential action researchers through issues such as the design, conduct, and presentation of their research, with the aim of improving relevance and rigour in action research studies.
In vitro differentiation of human amniotic fluid‐derived cells: Augmentation towards a neuronal dopaminergic phenotype

Amniotic fluid is known to yield a number of cell types which are multipotent, ethically derived, genetically stable, easily grown, expanded and possess favourable immunogenicity, which has resulted in an increasing interest for use in various neuronal disorders such as Parkinson's disease. The neuronal potential of cells derived from the adherent fraction of amniotic fluid, routinely taken by amniocentesis, are least explored. The aim of the present study was to investigate the capacity of these cells for neuronal and dopaminergic differentiation using in vitro differentiation protocols with canonical inductive factors not previously tested. To do this, samples derived from multiple donors were grown under four conditions: standard serum‐containing media, NB (neurobasal) media designed specifically for propagation and maintenance of neuronal cells, NB media with addition of retinoic acid and BDNF (brain‐derived neurotrophic factor) for NI (neuronal induction), and NB media with addition of FGF8 (fibroblast growth factor‐8) and Shh (sonic hedgehog) after NI. Our results showed the presence of multiple neuronal markers after growth in serum‐containing medium [TUJ1, MAP2, NF‐M, TH (tyrosine hydroxylase)], which was significantly up‐regulated after serum withdrawal in NB medium alone with induction of NeuN (neuronal nuclei) and NSE (neuron‐specific enolase). NI and DA.I (dopaminergic induction) was accompanied by further increases in expression and a distinct transition to a sustained neuronal morphology. Western blot analysis confirmed increasing TH expression and NURR1, expressed in base serum‐containing media, found to be down‐regulated after induction. In conclusion, these cells possess a highly favourable base neuronal and dopaminergic prepotential, which may easily be accentuated by standard induction protocols.
The prevalence of primary dystonia: A systematic review and meta‐analysis

Dystonia is a hyperkinetic movement disorder characterized by sustained muscle contractions that produce repetitive movements and abnormal postures. Specific information on the prevalence of dystonia has been difficult to establish because the existing epidemiological studies of the condition have adopted different methodologies for case ascertainment, resulting in widely differing reported prevalence. Medline and Embase databases were searched using terms specific to dystonia for studies of incidence, prevalence, and epidemiology. All population‐based studies reporting an incidence and/or prevalence of primary dystonia were included. Sixteen original studies were included in our systematic review. Fifteen studies reported the prevalence of dystonia, including 12 service‐based and three population‐based studies. We performed a meta‐analysis on the results of the service‐based studies, and were able to combine data on the prevalence of several dystonia subtypes. From these studies, we calculated an overall prevalence of primary dystonia of 16.43 per 100,000 (95% confidence interval [CI]: 12.09–22.32). The prevalence of dystonia reported in the three population‐based studies appears higher than that reported in the service‐based studies. Only 1 of the 16 studies reported an incidence of cervical dystonia. This corresponded to a corrected incidence estimate of 1.07 per 100,000 person‐years (95% CI: 0.86–1.32). Despite numerous studies on the epidemiology of dystonia, attempting to determine an accurate prevalence of the condition for health services planning remains a significant challenge. Given the methodological limitations of the existing studies, our own prevalence estimate of primary dystonia likely underestimates the true prevalence of the condition. © 2012 Movement Disorder Society
Observation of Various and Spontaneous Magnetic Skyrmionic Bubbles at Room Temperature in a Frustrated Kagome Magnet with Uniaxial Magnetic Anisotropy

The quest for materials hosting topologically protected skyrmionic spin textures continues to be fueled by the promise of novel devices. Although many materials have demonstrated the existence of such spin textures, major challenges remain to be addressed before devices based on magnetic skyrmions can be realized. For example, being able to create and manipulate skyrmionic spin textures at room temperature is of great importance for further technological applications because they can adapt to various external stimuli acting as information carriers in spintronic devices. Here, the first observation of skyrmionic magnetic bubbles with variable topological spin textures formed at room temperature in a frustrated kagome Fe3Sn2 magnet with uniaxial magnetic anisotropy is reported. The magnetization dynamics are investigated using in situ Lorentz transmission electron microscopy, revealing that the transformation between different magnetic bubbles and domains is via the motion of Bloch lines driven by an applied external magnetic field. These results demonstrate that Fe3Sn2 facilitates a unique magnetic control of topological spin textures at room temperature, making it a promising candidate for further skyrmion‐based spintronic devices.
Oogenesis: From Oogonia to Ovulation in the Flagfish, Jordanella floridae Goode and Bean, 1879 (Teleostei: Cyprinodontidae)

We provide histological details of the development of oocytes in the cyprinodontid flagfish, Jordanella floridae. There are six stages of oogenesis: Oogonial proliferation, chromatin nucleolus, primary growth (previtellogenesis [PG]), secondary growth (vitellogenesis), oocyte maturation and ovulation. The ovarian lamellae are lined by a germinal epithelium composed of epithelial cells and scattered oogonia. During primary growth, the development of cortical alveoli and oil droplets, are initiated simultaneously. During secondary growth, yolk globules coalesce into a fluid mass. The full‐grown oocyte contains a large globule of fluid yolk. The germinal vesicle is at the animal pole, and the cortical alveoli and oil droplets are located at the periphery. The disposition of oil droplets at the vegetal pole of the germinal vesicle during late secondary growth stage is a unique characteristic. The follicular cell layer is composed initially of a single layer of squamous cells during early PG which become columnar during early vitellogenesis. During primary and secondary growth stages, filaments develop among the follicular cells and also around the micropyle. The filaments are seen extending from the zona pellucida after ovulation. During ovulation, a space is evident between the oocyte and the zona pellucida. Asynchronous spawning activity is confirmed by the observation that, after ovulation, the ovarian lamellae contain follicles in both primary and secondary growth stages; in contrast, when the seasonal activity of oogenesis and spawning ends, after ovulation, the ovarian lamellae contain only follicles in the primary growth stage. J. Morphol. 277:1339–1354, 2016. © 2016 Wiley Periodicals, Inc.