Miracle-dz/UniFAR-FTUs huggingface dataset:
Measurement of Physical Fitness and 24/7 Physical Activity, Standing, Sedentary Behavior, and Time in Bed in Working-Age Finns: Study Protocol for FINFIT 2021

Background: Population studies gathering measured data on fitness and physical behavior, covering physical activity, standing, sedentary behavior, and time in bed, are scarce. This article describes the protocol of the FINFIT 2021 study that measures fitness and physical behavior in a population-based sample of adults and analyzes their associations and dose–response relationships with several health indicators. Methods: The study comprises a stratified random sample of 20–69-year-old men and women (n = 16,500) from seven city-centered regions in Finland. Physical behavior is measured 24/7 by tri-axial accelerometry and analyzed with validated MAD-APE algorithms. Health and fitness examinations include fasting blood samples, measurements of blood pressure, anthropometry, and health-related fitness. Domains of health, functioning, well-being, and socio-demographics are assessed by a questionnaire. The data are being collected between September 2021 and February 2022. Discussion: The study provides population data on physical fitness and physical behavior 24/7. Physical behavior patterns by intensity and duration on an hour-by-hour basis will be provided. In the future, the baseline data will be assessed against prospective register-based data on incident diseases, healthcare utilization, sickness absence, premature retirement, and death. A similar study will be conducted every fourth year with a new random population sample.
Antigenicity of the Mu (B.1.621) and A.2.5 SARS-CoV-2 Spikes

The rapid emergence of SARS-CoV-2 variants is fueling the recent waves of the COVID-19 pandemic. Here, we assessed ACE2 binding and antigenicity of Mu (B.1.621) and A.2. 5 Spikes. Both these variants carry some mutations shared by other emerging variants. Some of the pivotal mutations such as N501Y and E484K in the receptor-binding domain (RBD) detected in B.1. 1.7 (Alpha), B.1. 351 (Beta) and P.1 (Gamma) are now present within the Mu variant. Similarly, the L452R mutation of B.1. 617.2 (Delta) variant is present in A.2. 5. In this study, we observed that these Spike variants bound better to the ACE2 receptor in a temperature-dependent manner. Pseudoviral particles bearing the Spike of Mu were similarly neutralized by plasma from vaccinated individuals than those carrying the Beta (B.1.351) and Delta (B.1.617.2) Spikes. Altogether, our results indicate the importance of measuring critical parameters such as ACE2 interaction, plasma recognition and neutralization ability of each emerging variant.
Protective effect of chrysin on indomethacin induced gastric ulcer in rats: role of multi-pathway regulation

ABSTRACT We investigated the potential gastroprotective effects of chrysin on indomethacin induced gastric ulcers in rats. We used six groups of animals: control; indomethacin (Indo); reference (Ulcuran®); indomethacin + 25 mg/kg chrysin (Indo + CHR25); indomethacin + 50 mg/kg chrysin (Indo + CHR50); indomethacin + 100 mg/kg chrysin (Indo + CHR100). All doses of chrysin were given orally to rats before indomethacin. Gastric lesions were examined macroscopically and microscopically. The effects of treatment with chrysin were assessed versus a single dose of 30 mg/kg Ulcuran® (generic ranitidine) as reference standard. We also investigated gastric mucosal superoxide dismutase (SOD), glutathione (GSH), glutathione peroxidase (GPx), catalase (CAT), malonaldehyde (MDA) and arginase activities, and COX-2, PGE2, iNOS, TNF-α, IL-1β, NFκB, MPO, Bax, caspase-3 and 8-OHdG levels. We assessed caspase-3 and Bax levels using immunohistochemistry. Compared to the control and reference groups, SOD, CAT, GPx and arginase activities and GSH levels decreased, and MDA levels increased in the indomethacin induced gastric ulcer group. iNOS, TNF-α, IL-1β, NFκB, MAPK-14, MPO, Bax and 8-OHdG levels were increased in the indomethacin treated gastric group, while COX-2 activity and PGE2 levels were decreased. The three doses of chrysin co-administered with indomethacin increased COX-2 activity and PGE2 levels in rats with ulcers. Chrysin exhibited gastroprotective effects on indomethacin induced gastric ulcer due to its antioxidant, anti-inflammatory and anti-apoptotic activities.
Histone chaperones exhibit conserved functionality in nucleosome remodeling

Chromatin homeostasis mediates some of the most fundamental processes in the eukaryotic cell. In this regard, histone chaperones have emerged as major regulatory factors during DNA replication, repair, and transcription. However, the dynamic nature of these processes has severely impeded their characterization at the molecular level. Here we apply single-molecule probing by fluorescence optical tweezers to follow histone chaperone dynamics in real-time. The molecular action of SET/template-activating factor-Iβ and nucleophosmin 1—representing the two most common histone chaperone folds—were examined using both nucleosomes and isolated core histones. We show that these chaperones present binding specificity for partially dismantled nucleosomes and are able to recognize and disrupt non-native histone-DNA interactions. Furthermore, we reveal that cytochrome c inhibition of histone chaperones is coupled to chaperone accumulation on DNA-bound histones. Our single-molecule approach shows that despite the drastically different structures of these chaperones, they present conserved modes of action mediating nucleosome remodeling.
Comparative Effects of Basic Fibroblast Growth Factor Delivery or Voluntary Exercise on Muscle Regeneration after Volumetric Muscle Loss

Volumetric muscle loss (VML) is associated with irreversibly impaired muscle function due to traumatic injury. Experimental approaches to treat VML include the delivery of basic fibroblast growth factor (bFGF) or rehabilitative exercise. The objective of this study was to compare the effects of spatially nanopatterned collagen scaffold implants with either bFGF delivery or in conjunction with voluntary exercise. Aligned nanofibrillar collagen scaffold bundles were adsorbed with bFGF, and the bioactivity of bFGF-laden scaffolds was examined by skeletal myoblast or endothelial cell proliferation. The therapeutic efficacy of scaffold implants with either bFGF release or exercise was examined in a murine VML model. Our results show an initial burst release of bFGF from the scaffolds, followed by a slower release over 21 days. The released bFGF induced myoblast and endothelial cell proliferation in vitro. After 3 weeks of implantation in a mouse VML model, twitch force generation was significantly higher in mice treated with bFGF-laden scaffolds compared to bFGF-laden scaffolds with exercise. However, myofiber density was not significantly improved with bFGF scaffolds or voluntary exercise. In contrast, the scaffold implant with exercise induced more re-innervation than all other groups. These results highlight the differential effects of bFGF and exercise on muscle regeneration.
Endoscopic characterization of colorectal neoplasia with different published classifications: comparative study involving CONECCT classification

Background and study aims The aim of this study was to validate the COlorectal NEoplasia Classification to Choose the Treatment (CONECCT) classification that groups all published criteria (including covert signs of carcinoma) in a single table. Patients and methods For this multicenter comparative study an expert endoscopist created an image library (n = 206 lesions; from hyperplastic to deep invasive cancers) with at least white light Imaging and chromoendoscopy images (virtual ± dye based). Lesions were resected/biopsied to assess histology. Participants characterized lesions using the Paris, Laterally Spreading Tumours, Kudo, Sano, NBI International Colorectal Endoscopic Classification (NICE), Workgroup serrAted polypS and Polyposis (WASP), and CONECCT classifications, and assessed the quality of images on a web-based platform. Krippendorff alpha and Cohen’s Kappa were used to assess interobserver and intra-observer agreement, respectively. Answers were cross-referenced with histology. Results Eleven experts, 19 non-experts, and 10 gastroenterology fellows participated. The CONECCT classification had a higher interobserver agreement (Krippendorff alpha = 0.738) than for all the other classifications and increased with expertise and with quality of pictures. CONECCT classification had a higher intra-observer agreement than all other existing classifications except WASP (only describing Sessile Serrated Adenoma Polyp). Specificity of CONECCT IIA (89.2, 95 % CI [80.4;94.9]) to diagnose adenomas was higher than the NICE2 category (71.1, 95 % CI [60.1;80.5]). The sensitivity of Kudo Vi, Sano IIIa, NICE 2 and CONECCT IIC to detect adenocarcinoma were statistically different ( P < 0.001): the highest sensitivities were for NICE 2 (84.2 %) and CONECCT IIC (78.9 %), and the lowest for Kudo Vi (31.6 %). Conclusions The CONECCT classification currently offers the best interobserver and intra-observer agreement, including between experts and non-experts. CONECCT IIA is the best classification for excluding presence of adenocarcinoma in a colorectal lesion and CONECCT IIC offers the better compromise for diagnosing superficial adenocarcinoma.
Plant Growth-Promoting Activity of Pseudomonas aeruginosa FG106 and Its Ability to Act as a Biocontrol Agent against Potato, Tomato and Taro Pathogens

Simple Summary Microbial bio-stimulants are attracting increasing attention in agricultural research. In particular, plant growth-promoting rhizobacteria (PGPR) have great potential to improve crops’ productivity and tolerance of biotic and abiotic stresses. It is anticipated that PGPR could eventually replace synthetic fungicides in agriculture. This research evaluated Pseudomonas aeruginosa strain FG106—which was isolated from tomato plants– as a potential biocontrol agent against several plant pathogens. This strain displayed multiple plant growth-promoting attributes and high in vitro and in vivo inhibition of growth and pathogenicity of tested phytopathogens. It is thus a multifunctional PGPR with potential applications as a biocontrol agent to control fungal and bacterial pathogens. Abstract P. aeruginosa strain FG106 was isolated from the rhizosphere of tomato plants and identified through morphological analysis, 16S rRNA gene sequencing, and whole-genome sequencing. In vitro and in vivo experiments demonstrated that this strain could control several pathogens on tomato, potato, taro, and strawberry. Volatile and non-volatile metabolites produced by the strain are known to adversely affect the tested pathogens. FG106 showed clear antagonism against Alternaria alternata, Botrytis cinerea, Clavibacter michiganensis subsp. michiganensis, Phytophthora colocasiae, P. infestans, Rhizoctonia solani, and Xanthomonas euvesicatoria pv. perforans. FG106 produced proteases and lipases while also inducing high phosphate solubilization, producing siderophores, ammonia, indole acetic acid (IAA), and hydrogen cyanide (HCN) and forming biofilms that promote plant growth and facilitate biocontrol. Genome mining approaches showed that this strain harbors genes related to biocontrol and growth promotion. These results suggest that this bacterial strain provides good protection against pathogens of several agriculturally important plants via direct and indirect modes of action and could thus be a valuable bio-control agent.
The Fitting Optimization Path Analysis on Scale Missing Data: Based on the 507 Patients of Poststroke Depression Measured by SDS

Objective To explore the optimal fitting path of missing data of the Scale to make the fitting data close to the real situation of patients' data. Methods Based on the complete data set of the SDS of 507 patients with stroke, the data simulation sets of Missing Completely at Random (MCAR), Missing at Random (MAR), and Missing Not at Random (MNAR) were constructed by R software, respectively, with missing rates of 5%, 10%, 15%, 20%, 25%, 30%, 35%, and 40% under three missing mechanisms. Mean substitution (MS), random forest regression (RFR), and predictive mean matching (PMM) were used to fit the data. Root mean square error (RMSE), the width of 95% confidence intervals (95% CI), and Spearman correlation coefficient (SCC) were used to evaluate the fitting effect and determine the optimal fitting path. Results when dealing with the problem of missing data in scales, the optimal fitting path is ① under the MCAR deletion mechanism, when the deletion proportion is less than 20%, the MS method is the most convenient; when the missing ratio is greater than 20%, RFR algorithm is the best fitting method. ② Under the Mar mechanism, when the deletion ratio is less than 35%, the MS method is the most convenient. When the deletion ratio is greater than 35%, RFR has a better correlation. ③ Under the mechanism of MNAR, RFR is the best data fitting method, especially when the missing proportion is greater than 30%. In reality, when the deletion ratio is small, the complete case deletion method is the most commonly used, but the RFR algorithm can greatly expand the application scope of samples and save the cost of clinical research when the deletion ratio is less than 30%. The best way to deal with data missing should be based on the missing mechanism and proportion of actual data, and choose the best method between the statistical analysis ability of the research team, the effectiveness of the method, and the understanding of readers.
Structure - Control Interactions in Flexible Aerospace Vehicles

The present paper investigates the problem of structure – control interaction in aerospace vehicles, from a structural response perspective. A generic vehicle is taken for the present study, for which the simplified short period flight dynamic model is arrived at, taking into account the various effects of the structural flexibilities. The formulation includes the static aeroelastic effects as well as the couplings arising due to the structural dynamic response of the vehicle structure. Both open and close loop studies are carried out and it is found that in general, the presence of an autopilot for flight control has the potential to worsen the structural response when the flight dynamic control loop is closed. Nomenclature as Normal acceleration of vehicle measured at sensor location CG Vehicle centre of gravity f(x,t) External time dependent force distribution along the vehicle length Fi(x,t) External time dependent force in the i th mode g Acceleration due to gravity Gj(s) Transfer function of j th component of the control loop Kq; K n Pitch rate and normal acceleration loop gains Iyy Pitch mass moment of inertia of the vehicle about CG L
Influence of drought stress on growth, biochemical changes and leaf gas exchange of strawberry (Fragaria × ananassa Duch.) in Indonesia

Drought stress is one of the challenges that can affect the growth and the quality of strawberry. The study aims to determine the growth, biochemical changes and leaf gas exchange of three strawberry cultivars under drought stress. This study was conducted in a glasshouse at Indonesian Citrus and Subtropical Fruits Research Institute, Indonesia, from July-November 2018. The experiment was arranged in a factorial randomized completely block design (RCBD) with three replications and four water deficit (WD) levels [100% field capacity (FC)/well-watered), 75% of FC (mild WD), 50% of FC (moderate WD), and 25% of FC (severe WD)] for three strawberry cultivars (Earlibrite, California and Sweet Charlie). The results showed that total chlorophyll and anthocyanin contents (p ≤ 0.05) were influenced by the interaction effects of cultivars and water deficit. Whereas other parameters such as plant growth, transpiration rate (E), net photosynthesis (A), stomatal conductance (gs), leaf relative water content (LRWC), flowers and fruits numbers, proline content, length, diameter, weight and total soluble solid (TSS) of fruit were affected by water deficit. A had positive significant correlation with plant height (r = 0.808), leaf area (r = 0.777), fruit length (r = 0.906), fruit diameter (r = 0.889) and fruit weight (r = 0.891). Based on the results, cultivars affected LRWC, and also number of flowers and fruits of the strawberry. This study showed that water deficit decreased plant growth, chlorophyll content, leaf gas exchange, leaf relative water content, length, diameter and weight of fruit but enhanced TSS, anthocyanin, MDA, and proline contents. Increased anthocyanin and proline contents are mechanisms for protecting plants against the effects of water stress. California strawberry had the highest numbers of flowers and fruits, and also anthocyanin content. Hence, this cultivar is recommended to be planted under drought stress conditions. Among all water stress treatments, 75% of FC had the best results to optimize water utilization on the strawberry plants.
Nickel contamination analysis at cost-effective silver printed paper-based electrodes based on carbon black dimethylglyoxime ink as electrode modifier

Electrochemical detection of metal cations at paper-based sensors has been suggested as an attractive alternative to current spectroscopic and chromatographic detection techniques due to the ease of fabrication, disposable nature, and low cost. Herein, a novel carbon black (CB), dimethylglyoxime (DMG) ink is designed as an electrode modifier in conjunction with 3-electrode inkjet-printed paper substrates for use in the adsorptive stripping voltammetric electroanalysis of nickel cations in water samples. The developed method provides a novel, low-cost, rapid, and portable adsorptive stripping detection approach towards metal analysis in the absence of the commonly used toxic metallic films. The study demonstrated a novel approach to nickel detection at paper-based sensors and builds on previous work in the field of paper-based metal analysis by limiting the use of toxic metal films. The device sensitivity is improved by increasing the active surface area, electron transfer kinetics, and catalytic effects associated with non-conductive dimethylglyoxime films through CB nanoparticles for the first time and confirmed by electroanalysis. The first use of the CB-DMG ink allows for the selective preconcentration of analyte at the electrode surface without the use of toxic Mercury or Bismuth metallic films. Compared to similarly reported paper-based sensors, improved limits of detection (48 µg L-1), selectivity, and intermetallic interferences were achieved. The method was applied to the detection of nickel in water samples well below World Health Organization (WHO) standards.
Peaceful End of Life Theory: A Critical Analysis of Its Use to Improve Nursing Practice

BackgroundProvision of empathetic palliative care in agreement with patient’s favorites is an indispensable attitude of healthcare providers. A Peaceful End of Life Theory was designed by Rulandand Moore (1998),to provide theoretical framework for nurses who care for patients at end stage of their life.MethodsChinn and Kramer theory analysis guideline was used to analyse this theory to suggest its improvement.ResultsFive major concepts and sub-concepts are identified.This theory informs the nursing profession on the relieving interventions at the end of life. It provides a guidance to supportively manage terminally ill patients in collaboration with their families.ConclusionThis theory is important to guide nursing practice,research, and education. However, there is a lack of an instrument to measure the desired outcomes, some subconcepts do not cleary specify the nursing interventions, and it lacks the spiritual comfort to the terminally ill patients who believe in eternal life.Rwanda J Med Health Sci 2021;4(3):412-417
Application of 3D Body Scan Technique to the Measurement and Evaluation in Sports Science

Compared with traditional body morphology measurement,3D Body Scan technique has the advantage of fast speed,more evaluation indicators and no body contact.The measurement accuracy is restricted by the software reading the 3D image.This technology is just come to use in sports scientific research.174 subjects(74 male,100 female)was measured by Anthroscan 3D VITUS made in Germany and also by traditional measurement,and got 29 body morphology indexes for comparison.Compared with the measuring results of professional researcher,it found that 14 indexes' results were similar.The error rate was less than 3%. The difference rate between the spine width and thorax width and thickness was more than 10%. And the error rate in the others was 3%～10%. Difference posture and anchor point are main causes of error.The results indicated that the researchers shall adopt the same measurement method in measure the body morphology and could not cross use the results from the two different measurement ways in the research.
Better Understand Rare Disease Patients’ Needs by Analyzing Social Media Data – a Case Study of Cystic Fibrosis

There are approximately 7,000 rare diseases, and 25-30 million people affected with a rare disease in the United States. Prevalence rate for rare diseases is relatively low compared to common diseases. Thus, disease rarity leads to a lack of clinical familiarity that often impedes accurate and timely diagnosis for many rare disease patients. Social media has become an important resource/tool for discussing, sharing, and seeking information relevant to rare diseases by patients and families. In this study, we aimed to analyze rare disease-related posts from Reddit, one popular social media platform to reveal rare disease patients’ needs based on hidden topics to be identified. We implemented NLP/topic modelling to identify main topics from the posts and consequently computed TF-IDF to detect the most prevalent phrases as sub-topics from the posts. As a proof of concept, we primarily focused on Cystic Fibrosis as a case study to demonstrate the use of data from Reddit for rare disease research.
Identification of Molecular Subtypes and Potential Small-Molecule Drugs for Esophagus Cancer Treatment Based on m6A Regulators

Background Esophagus cancer (ESCA) is the sixth most frequent cancer in males, with 5-year overall survival of 15%–25%. RNA modifications function critically in cancer progression, and m6A regulators are associated with ESCA prognosis. This study further revealed correlations between m6A and ESCA development. Methods Univariate Cox regression analysis and consensus clustering were applied to determine molecular subtypes. Functional pathways and gene ontology terms were enriched by gene set enrichment analysis. Protein-protein interaction (PPI) analysis on differentially expressed genes (DEGs) was conducted for hub gene screening. Public drug databases were employed to study the interactions between hub genes and small molecules. Results Three molecular subtypes related to ESCA prognosis were determined. Based on multiple analyses among molecular subtypes, 146 DEGs were screened, and a PPT network of 15 hub genes was visualized. Finally, 8 potential small-molecule drugs (BMS-754807, gefitinib, neratinib, zuclopenthixol, puromycin, sulfasalazine, and imatinib) were identified for treating ESCA. Conclusions This study applied a new approach to analyzing the relation between m6A and ESCA prognosis, providing a reference for exploring potential targets and drugs for ESCA treatment.