Miracle-dz/UniFAR-FTUs huggingface dataset:
Hierarchically Demineralized Cortical Bone Combined With Stem Cell–Derived Extracellular Matrix for Regeneration of the Tendon-Bone Interface

Background: Poor healing of the tendon-bone interface after rotator cuff repair is one of the main causes of surgical failure. Previous studies demonstrated that demineralized cortical bone (DCB) could improve healing of the enthesis. Purpose: To evaluate the outcomes of hierarchically demineralized cortical bone (hDCB) coated with stem cell–derived extracellular matrix (hDCB-ECM) in the repair of the rotator cuff in a rabbit model. Study Design: Controlled laboratory study. Methods: Tendon-derived stem cells (TDSCs) were isolated, cultured, and identified. Then, hDCB was prepared by the graded demineralization procedure. Finally, hDCB-ECM was fabricated via 2-week cell culture and decellularization, and the morphologic features and biochemical compositions of the hDCB-ECM were evaluated. A total of 24 rabbits (48 samples) were randomly divided into 4 groups: control, DCB, hDCB, and hDCB-ECM. All rabbits underwent bilateral detachment of the infraspinatus tendon, and the tendon-bone interface was repaired with or without scaffolds. After surgery, 8 rabbits were assessed by immunofluorescence staining at 2 weeks, and the others were assessed by micro–computed tomography (CT) examination, immunohistochemical staining, histological staining, and biomechanical testing at 12 weeks. Results: TDSCs were identified to have universal stem cell characteristics including cell markers, clonogenicity, and multilineage differentiation. The hDCB-ECM contained 3 components (bone, partial DCB, and DCB coated with ECM) with a gradient of calcium and phosphorus elements, and the ECM had stromal cell-derived factor 1, biglycan, and fibromodulin. Macroscopic observations demonstrated the absence of infection and rupture around the enthesis. The results of immunofluorescence staining showed that hDCB-ECM promoted stromal cell recruitment. Results of micro-CT analysis, immunohistochemical staining, and histological staining showed that hDCB-ECM enhanced bone and fibrocartilage formation at the tendon-bone interface. Biomechanical analysis showed that the hDCB-ECM group had higher ultimate tensile stress and Young modulus than the DCB group. Conclusion: The administration of hDCB-ECM promoted healing of the tendon-bone interface. Clinical Relevance: hDCB-ECM could provide useful information for the design of scaffolds to repair the tendon-bone interface, and further studies are needed to determine its effectiveness.
Synthesis of new cationic BINAP–ruthenium(II) complexes and their use in asymmetric hydrogenation [BINAP = 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl]

Reaction of [RuX2(arene)]2(1) and (S)-BINAP gives cationic BINAP–ruthenium complexes of the formula {RuX(arene)[(S)-binap]} Y (2)(X = Cl, Br, and l; Y = Cl, Br, l, BF4, and BPh4; arene = C6H6 and p-MeC6H4CHMe2) which are efficient catalyst precursors for enantioselective hydrogenation of various prochiral alkenic and ketonic substrates [BINAP = 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl]; a crystal structure of (2)(with X = Cl, Y = BF4) was obtained.
Altered Expression of Peroxiredoxins in Mouse Model of Progressive Myoclonus Epilepsy upon LPS-Induced Neuroinflammation

Stefin B (cystatin B) is an inhibitor of endo-lysosomal cysteine cathepsin, and the loss-of-function mutations in the stefin B gene were reported in patients with Unverricht–Lundborg disease (EPM1), a form of progressive myoclonus epilepsy. Stefin B-deficient mice, a mouse model of the disease, display key features of EPM1, including myoclonic seizures. Although the underlying mechanism is not yet completely clear, it was reported that the impaired redox homeostasis and inflammation in the brain contribute to the progression of the disease. In the present study, we investigated if lipopolysaccharide (LPS)-triggered neuroinflammation affected the protein levels of redox-sensitive proteins: thioredoxin (Trx1), thioredoxin reductase (TrxR), peroxiredoxins (Prxs) in brain and cerebella of stefin B-deficient mice. LPS challenge was found to result in a marked elevation of Trx1 and TrxR in the brain and cerebella of stefin B deficient mice, while Prx1 was upregulated only in cerebella after LPS challenge. Mitochondrial peroxiredoxin 3 (Prx3), was upregulated also in the cerebellar tissue lysates prepared from unchallenged stefin B deficient mice, while after LPS challenge Prx3 was upregulated in stefin B deficient brain and cerebella. Our results imply the role of oxidative stress in the progression of the disease.
Clear increases in acetylene reduction by soil bacteria from an East Siberian Taiga forest bed under conditions mimicking the natural soil environment

Abstract In boreal forest ecosystems, nitrogen imbalance has long been discussed as a mystery with regard to its high biomass production. Under conditions widely used for the soybean nodulation bacterium Bradyrhizobium japonicum, microbiota in forest bed soil often do not show any significant acetylene reduction. However, in a recent study, soil bacterial microbiota in an East Siberian Taiga forest bed and bacteria isolated from the soil show remarkable acetylene reduction in nitrogen-poor soft-gel medium solidified with gellan gum instead of agar. Thus, we precisely investigated optimal culture conditions including compositions of the medium; appropriate conditions for the soil microbiota were determined as follows: 0.5 g L−1 D-mannitol as the carbon source, 10–15°C incubation temperature and medium pH 6.2. These culture conditions resembled the physicochemical conditions of the active layer in the East Siberian boreal forest bed on the permafrost. In fact, mannitol, which was the most appropriate carbon source, was obtained as a major sugar component of the cowberry root mats that cover the larch forest bed in this region. The most profitable concentration of D-mannitol (0.5 g L−1) for acetylene reduction was only 1/20 or 1/30 of the amount of the carbon source used in worldwide acetylene reduction assays. In a similar manner, 10–15°C, which was the most profitable incubation temperature range, was close to the reported temperature of the active layer of the bulk soil in summer. us, even in a 3.0 g L−1 gellan gum medium, an acetylene reduction assay under the imitated soil conditions led to clear increases in acetylene reduction of the bacterial communities tested. The N2-fixing potential of boreal forest bed soil had thus ever been evaluated unfairly low, because the world wide assay conditions were too far from the soil environments.
Imperatorin Interferes with LPS Binding to the TLR4 Co-Receptor and Activates the Nrf2 Antioxidative Pathway in RAW264.7 Murine Macrophage Cells

Imperatorin (IMP) could downregulate several inflammatory transcription factor signaling pathways. Some studies have pointed out that IMP could interfere with toll-like receptor 4 (TLR4) signaling. This study evaluates how IMP interferes with the TLR4 co-receptors signaling through the protein-ligand docking model, Western blotting, immunofluorescence (IF), and atomic force microscopy (AFM) assays in lipopolysaccharide (LPS) stimulated macrophage-like RAW264.7 cells in vitro. The results of the protein-ligand docking demonstrate that IMP interferes with LPS binding to the LPS-binding protein (LBP), the cluster of differentiation 14 (CD14), and the toll-like receptor 4/myeloid differentiation factor 2 (TLR4/MD-2) co-receptors in LPS-stimulated RAW264.7 cells. Compared with TLR4 antagonist CLI-095 or dexamethasone, IMP could suppress the protein expressions of LBP, CD14, and TLR4/MD-2 in LPS-stimulated cells. Furthermore, the three-dimensional (3D) image assay of the AFM showed IMP could prevent the LPS-induced morphological change in RAW264.7 cells. Additionally, IMP could activate the nuclear factor erythroid 2-related factor 2 (Nrf2) signaling pathway, and it increased the antioxidative protein expression of heme oxygenase-1 (HO-1), superoxidase dismutase (SOD), and catalase (CAT). Our results are the first to reveal that the anti-inflammatory effect of IMP interferes with LPS binding to TLR4 co-receptor signaling and activates the antioxidative Nrf2 signaling pathway.
Low temperature reduction in Ta–O and Nb–O thin films

The effect of thermal reduction in ultra-high vacuum was studied in films of tantalum and niobium oxides obtained by oxidation of deposited metallic layers. The obtained films appeared to be amorphous and their stoichiometry was not uniform. For the Ta based film the main component was Ta2O5 while for the oxidized Nb film the pentoxide was present in the topmost part of the film and the thickest layer had the electron density assigned to NbO2. Thermal reduction was studied with the use of in situ photoelectron spectroscopy which revealed for the Nb–O film a strong effect for temperature as low as 300 °C. The Nb–O film reduced at 600 °C exhibited dominating metallic-like electronic states assigned to NbO. For the Ta–O film the significant reduction process started above 600 °C. At 900 °C the film showed metallic-like states which can be attributed to Ta2O. A single crystal of Nb2O5 showed no effect of reduction for temperatures up to 500 °C. A test performed with the use of local conductivity atomic force microscopy showed the most interesting bipolar-like resistive switching properties for the films reduced at temperatures up to 300 °C.
The Impact of Formulation on the Content of Phenolic Compounds in Snacks Enriched with Dracocephalum moldavica L. Seeds: Introduction to Receiving a New Functional Food Product

A new type of multigrain snack has been designed containing varied additions of Moldavian dragonhead (Dracocephalum moldavica L.) seeds. The antioxidant properties and the general health benefits of this plant material have already been widely acknowledged. The research discussed herein aimed to investigate the influence of the formulation and expansion method (frying) on the content of polyphenolic compounds, individual phenolic acids, and antiradical properties of innovative snacks enriched with dragonhead seeds. The highest content of polyphenols (0.685 mg GAE/mL), free phenolic acids (47.052 µg/g of dry matter), and highest radical scavenging activity (96.23% towards DPPH) were found in the fried snacks enriched with 22% of seeds. In these samples, 11 phenolic acids were detected. Strong positive correlations were seen between the addition of dragonhead and the polyphenol content (r = 0.989) and between the quantity of the enriching additive and the content of free phenolic acids (r = 0.953). The research has shown that such innovative snacks have the potential to supply health-benefiting free phenolic acids, e.g., salicylic, isoferulic, ferulic, p-coumaric, vanillic. Our studies provide an introduction to the development of a new range of functional foods.
Formation and Validation of the Healthy Diet Index (HDI) for Evaluation of Diet Quality in Healthcare

Lack of tools to evaluate the quality of diet impedes dietary counselling in healthcare. We constructed a scoring for a validated food intake questionnaire, to measure the adherence to a healthy diet that prevents type 2 diabetes (T2D). The Healthy Diet Index (HDI) consists of seven weighted domains (meal pattern, grains, fruit and vegetables, fats, fish and meat, dairy, snacks and treats). We studied the correlations of the HDI with nutrient intakes calculated from 7-day food records among 52 men and 25 women, and associations of HDI with biomarkers and anthropometrics among 645 men and 2455 women. The HDI correlated inversely with total fat (Pearson’s r = −0.37), saturated fat (r = −0.37), monounsaturated fat (r = −0.37), and the glycaemic index of diet (r = −0.32) and positively with carbohydrates (r = 0.23), protein (r = 0.25), fibre (r = 0.66), magnesium (r = 0.26), iron (r = 0.25), and vitamin D (r = 0.27), (p < 0.05 for all). In the linear regression model adjusted for BMI and age, HDI is associated inversely with waist circumference, concentrations of fasting and 2-h glucose and triglycerides in men and women, total and LDL cholesterol in women, and fasting insulin in men (p < 0.05 for all). The HDI proved to be a valid tool to measure adherence to a health-promoting diet and to support individualised dietary counselling.
An Evaluation Method for Meeting the Requirement of IEC 60825-1 Laser Safety Standard for Viewing Temporally-varied Radiant Power

Abstract There is no article discussing how to apply the International Electrotechnical Commission (EIC) 60825-1 standard to evaluate laser safety for irregular non-pulsed signal. Yet, as more and more laser applications are introduced, it is very possible that laser radiant power is irregular non-pulsed signal. Here, we present a method of laser safety evaluation for thermal damage under Requirement 3 of the IEC 60825-1 standard.
Sirt1 and Sirt3 Activation Improved Cardiac Function of Diabetic Rats via Modulation of Mitochondrial Function

In the present study, we aimed to evaluate the effect of Sirt1, Sirt3 and combined activation in high fructose diet-induced insulin resistance rat heart and assessed the cardiac function focusing on mitochondrial health and function. We administered the Sirt1 activator; SRT1720 (5 mg/kg, i.p.), Sirt3 activator; Oroxylin-A (10 mg/kg i.p.) and the combination; SRT1720 + Oroxylin-A (5 mg/kg and 10 mg/kg i.p.) daily from 12th week to 20th weeks of study. We observed significant perturbations of most of the cardiac structural and functional parameters in high fructose diet-fed animals. Administration of SRT1720 and Oroxylin-A improved perturbed cardiac structural and functional parameters by decreasing insulin resistance, oxidative stress, and improving mitochondrial function by enhancing mitochondrial biogenesis, OXPHOS expression and activity in high fructose diet-induced insulin-resistant rats. However, we could not observe the synergistic effect of SRT1720 and Oroxylin-A combination. Similar to in-vivo study, perturbed mitochondrial function and oxidative stress observed in insulin-resistant H9c2 cells were improved after activation of Sirt1 and Sirt3. We observed that Sirt1 activation enhances Sirt3 expression and mitochondrial biogenesis, and the opposite effects were observed after Sirt1 inhibition in cardiomyoblast cells. Taken together our results conclude that activation of Sirt1 alone could be a potential therapeutic target for diabetes-associated cardiovascular complications.
Evolution of Nipah Virus Infection: Past, Present, and Future Considerations

Nipah virus (NiV) is a zoonotic paramyxovirus of the Henipavirus genus first identified in Malaysia in 1998. Henipaviruses have bat reservoir hosts and have been isolated from fruit bats found across Oceania, Asia, and Africa. Bat-to-human transmission is thought to be the primary mode of human NiV infection, although multiple intermediate hosts are described. Human infections with NiV were originally described as a syndrome of fever and rapid neurological decline following contact with swine. More recent outbreaks describe a syndrome with prominent respiratory symptoms and human-to-human transmission. Nearly annual outbreaks have been described since 1998 with case fatality rates reaching greater than 90%. The ubiquitous nature of the reservoir host, increasing deforestation, multiple mode of transmission, high case fatality rate, and lack of effective therapy or vaccines make NiV’s pandemic potential increasingly significant. Here we review the epidemiology and microbiology of NiV as well as the therapeutic agents and vaccines in development.
Robust Adaptive Control of Fully Constrained Cable-Driven Serial Manipulator with Multi-Segment Cables Using Cable Tension Sensor Measurements

The structure of the cable-driven serial manipulator (CDSM) is more complex than that of the cable-driven parallel manipulator (CDPM), resulting in higher model complexity and stronger structural and parametric uncertainties. These drawbacks challenge the stable trajectory-tracking control of a CDSM. To circumvent these drawbacks, this paper proposes a robust adaptive controller for an n-degree-of-freedom (DOF) CDSM actuated by m cables. First, two high-level controllers are designed to track the joint trajectory under two scenarios, namely known and unknown upper bounds of uncertainties. The controllers include an adaptive feedforward term based on inverse dynamics and a robust control term compensating for the uncertainties. Second, the independence of control gains from the upper bound of uncertainties and the inclusion of the joint viscous friction coefficient into the dynamic parameter vector are realised. Then, a low-level controller is designed for the task of tracking the cable tension trajectory. The system stability is analysed using the Lyapunov method. Finally, the validity and effectiveness of the proposed controllers are verified by experimenting with a three-DOF six-cable CDSM. In addition, a comparative experiment with the classical proportional–integral–derivative (PID) controller is carried out.
New Insights on the Genetic Basis Underlying SHILCA Syndrome: Characterization of the NMNAT1 Pathological Alterations Due to Compound Heterozygous Mutations and Identification of a Novel Alternative Isoform

This study aims to genetically characterize a two-year-old patient suffering from multiple systemic abnormalities, including skeletal, nervous and developmental involvements and Leber congenital amaurosis (LCA). Genetic screening by next-generation sequencing identified two heterozygous pathogenic variants in nicotinamide mononucleotide adenylyltransferase 1 (NMNAT1) as the molecular cause of the disease: c.439+5G>T and c.299+526_*968dup.This splice variant has never been reported to date, whereas pathogenic duplication has recently been associated with cases displaying an autosomal recessive disorder that includes a severe form of spondylo-epiphyseal dysplasia, sensorineural hearing loss, intellectual disability and LCA (SHILCA), as well as some brain anomalies. Our patient presented clinical manifestations which correlated strongly with this reported syndrome. To further study the possible transcriptional alterations resulting from these mutations, mRNA expression assays were performed in the patient and her father. The obtained results detected aberrant alternative transcripts and unbalanced levels of expression, consistent with severe systemic involvement. Moreover, these analyses also detected a novel NMNAT1 isoform, which is variably expressed in healthy human tissues. Altogether, these findings represent new evidence of the correlation of NMNAT1 and SHILCA syndrome, and provide additional insights into the healthy and pathogenic expression of this gene.
Computer Modeling and Simulation for 3D Crystallization of Polymers. I. Isothermal Case

Computer modeling and simulation for 3D isothermal crystallization of polymers is presented. We use the pixel coloring method to capture the morphology evolution and calculate the crystallization kinetics. A parametric study is used to explore the influences of nucleation density and growth rate on the crystallization. Results indicate that nucleation density is a significant factor to the crystallization kinetics as well as the morphology; growth rate only affects the crystallization kinetics and has no impact on the final morphology. Present results are hoping to give more insight about the crystallization and be more helpful to the industrial application.
Adapted Fringe Projection Sequences for Changing Illumination Conditions on the Example of Measuring a Wrought-Hot Object Influenced by Forced Cooling

Optical 3D geometry reconstruction, or more specific, fringe projection profilometry, is a state-of-the-art technique for the measurement of the shape of objects in confined spaces or under rough environmental conditions, e.g., while inspecting a wrought-hot specimen after a forging operation. While the contact-less method enables the measurement of such an object, the results are influenced by the light deflection effect occurring due to the inhomogeneous refractive index field induced by the hot air around the measurand. However, the developed active compensation methods to fight this issue exhibits a major drawback, namely an additional cooling of the object and a subsequent transient illumination component. In this paper, we investigate the cooling and its effect on temporal phase reconstruction algorithms and take a theoretical approach to its compensation. The simulated compensation measures are transferred to a fringe projection profilometry setup and are evaluated using established and newly developed methods. The results show a significant improvement when measuring specimens under a transient illumination and are easily transferable to any kind of multi-frequency phase-shift measurement. Dataset License: CC-BY
In Situ Measurements on Solid Oxide Fuel Cell Cathodes – Simultaneous X‐Ray Absorption and AC Impedance Spectroscopy on Symmetrical Cells

A solid oxide fuel cell in operando is a complex multiphasic entity under electrical polarization and operating at high temperatures. In this work, we reproduce these conditions while studying transition metal redox chemistry in situ at the cathode. This was achieved by building a furnace that allowed for X‐ray absorption near‐edge structure and AC impedance spectroscopy data to be obtained simultaneously on symmetrical cells while at operating temperatures. The cell electrodes consisted of phases from the Ruddlesden–Popper family; La2NiO4+δ, La4Ni3O10–δ, and composites thereof. The redox chemistry of nickel in these cathodes was probed in situ through investigation of changes in the position of the X‐ray absorption K‐edge. An oxidation state reduction (Ni3+ to Ni2+) was observed on heating the cells; this was correlated to changing concentrations of ionic charge carriers in the electrode. Polarizing the cells resulted in dramatic changes to their electrical performance but not to the bulk redox chemistry of the electrode. The implications of this with respect to explaining the polarization behavior are discussed.
The Independent Domestication of Timopheev’s Wheat: Insights from Haplotype Analysis of the Brittle rachis 1 (BTR1-A) Gene

Triticum turgidum and T. timopheevii are two tetraploid wheat species sharing T. urartu as a common ancestor, and domesticated accessions from both of these allopolyploids exhibit nonbrittle rachis (i.e., nonshattering spikes). We previously described the loss-of-function mutations in the Brittle Rachis 1 genes BTR1-A and BTR1-B in the A and B subgenomes, respectively, that are responsible for this most visible domestication trait in T. turgidum. Resequencing of a large panel of wild and domesticated T. turgidum accessions subsequently led to the identification of the two progenitor haplotypes of the btr1-A and btr1-B domesticated alleles. Here, we extended the haplotype analysis to other T. turgidum subspecies and to the BTR1 homologues in the related T. timopheevii species. Our results showed that all the domesticated wheat subspecies within T. turgidum share common BTR1-A and BTR1-B haplotypes, confirming their common origin. In T. timopheevii, however, we identified a novel loss-of-function btr1-A allele underlying a partially brittle spike phenotype. This novel recessive allele appeared fixed within the pool of domesticated Timopheev’s wheat but was also carried by one wild timopheevii accession exhibiting partial brittleness. The promoter region for BTR1-B could not be amplified in any T. timopheevii accessions with any T. turgidum primer combination, exemplifying the gene-level distance between the two species. Altogether, our results support the concept of independent domestication processes for the two polyploid, wheat-related species.