Miracle-dz/UniFAR-FTUs huggingface dataset:
CHIP: CHannel Independence-based Pruning for Compact Neural Networks

Filter pruning has been widely used for neural network compression because of its enabled practical acceleration. To date, most of the existing filter pruning works explore the importance of filters via using intra-channel information. In this paper, starting from an inter-channel perspective, we propose to perform efficient filter pruning using Channel Independence, a metric that measures the correlations among different feature maps. The less independent feature map is interpreted as containing less useful information$/$knowledge, and hence its corresponding filter can be pruned without affecting model capacity. We systematically investigate the quantification metric, measuring scheme and sensitiveness$/$reliability of channel independence in the context of filter pruning. Our evaluation results for different models on various datasets show the superior performance of our approach. Notably, on CIFAR-10 dataset our solution can bring $0.90\%$ and $0.94\%$ accuracy increase over baseline ResNet-56 and ResNet-110 models, respectively, and meanwhile the model size and FLOPs are reduced by $42.8\%$ and $47.4\%$ (for ResNet-56) and $48.3\%$ and $52.1\%$ (for ResNet-110), respectively. On ImageNet dataset, our approach can achieve $40.8\%$ and $44.8\%$ storage and computation reductions, respectively, with $0.15\%$ accuracy increase over the baseline ResNet-50 model. The code is available at https://github.com/Eclipsess/CHIP_NeurIPS2021.
Evaluating Serverless Architecture for Big Data Enterprise Applications

Migration of enterprise applications to the cloud has been driven by a myriad of benefits ranging from availability of infinite computing resources to the elimination of upfront CapEx cost. However, many users still face the burden of complex framework knowledge requirement to efficiently deploy applications in the cloud. In this paper, we investigate serverless computing for performing large scale data processing with cloud-native primitives. Serverless computing environment abstracts all infrastructure handling, simplifying developers’ work who aspire to deploy applications on the cloud. With dynamic input load on the system, serverless architecture has promise to provide better resource utilization and lower costs.
First Malian series of surgery for rheumatic valve disease: opening of the centre, clinical features and peri-operative realities.

INTRODUCTION Over the past two decades, the incidence of acute rheumatic fever (ARF) and chronic rheumatic heart disease (RHD) have dramatically declined in wealthier regions of the world as a result of preventative programmes, improved living standards and access to cardiac surgery. Nevertheless, ARF and RHD are still public health problems in less-developed regions of the world such as Oceania, south Asia and sub-Saharan Africa. AIM We report on clinical, therapeutic and prognostic aspects as well as the difficulties encountered during this first series of surgery for rheumatic valve disease in Mali. METHODS This was a prospective, descriptive study conducted at the Andre Festoc Cardiac Surgery Centre from September 2018 to August 2019. RESULTS The frequency of patients having been operated on for rheumatic valve disease was 44.73% (68 patients). The mean age of the patients was 18 ± 10 years with extremes of five and 60 years. The gender ratio was 0.7. The delay to treatment was between one and three years for 39.7% of the patients. The main diagnoses found were: mitral regurgitation in 50% of patients, mitral stenosis in 16.2% and aortic regurgitation in 10.3%. Pulmonary artery systolic pressure was 35-50 mmHg in 19.1% of patients and more than 50 mmHg in 25%. The median cardiopulmonary bypass time was 132 minutes (60-276) and median extubation time was three hours (0-96). The main complications were cardiac, renal, neurological, respiratory, gastrointestinal and infectious. In the immediate postoperative period, we recorded three deaths, which is a mortality rate of 4.4%. CONCLUSIONS Humanitarian efforts have led non-governmental organisations (NGOs) to launch surgical programmes in low-and middle-income countries in an attempt to fill the gap in these fragile healthcare systems. Cardiac surgery requires much expertise from the medical staff, as well as many material and financial resources. Empowerment of the local team is a challenge that is being realised since taking these essential steps of companionship with the NGO la Chaine de l'Espoir.
Type I IFN–Driven Immune Cell Dysregulation in Rat Autoimmune Diabetes

Type 1 diabetes is a chronic autoimmune disease, characterized by the immune-mediated destruction of insulin-producing β cells of pancreatic islets. Essential components of the innate immune antiviral response, including type I IFN and IFN receptor (IFNAR)–mediated signaling pathways, likely contribute to human type 1 diabetes susceptibility. We previously showed that LEW.1WR1 Ifnar1−/− rats have a significant reduction in diabetes frequency following Kilham rat virus (KRV) infection. To delineate the impact of IFNAR loss on immune cell populations in KRV-induced diabetes, we performed flow cytometric analysis in spleens from LEW.1WR1 wild-type (WT) and Ifnar1−/− rats after viral infection but before the onset of insulitis and diabetes. We found a relative decrease in CD8+ T cells and NK cells in KRV-infected LEW.1WR1 Ifnar1−/− rats compared with KRV-infected WT rats; splenic regulatory T cells were diminished in WT but not Ifnar1−/− rats. In contrast, splenic neutrophils were increased in KRV-infected Ifnar1−/− rats compared with KRV-infected WT rats. Transcriptional analysis of splenic cells from KRV-infected rats confirmed a reduction in IFN-stimulated genes in Ifnar1−/− compared with WT rats and revealed an increase in transcripts related to neutrophil chemotaxis and MHC class II. Single-cell RNA sequencing confirmed that MHC class II transcripts are increased in monocytes and macrophages and that numerous types of splenic cells harbor KRV. Collectively, these findings identify dynamic shifts in innate and adaptive immune cells following IFNAR disruption in a rat model of autoimmune diabetes, providing insights toward the role of type I IFNs in autoimmunity.
Comparative Analysis of Merge Trees Using Local Tree Edit Distance

Comparative analysis of scalar fields is an important problem with various applications including feature-directed visualization and feature tracking in time-varying data. Comparing topological structures that are abstract and succinct representations of the scalar fields lead to faster and meaningful comparison. While there are many distance or similarity measures to compare topological structures in a global context, there are no known measures for comparing topological structures locally. While the global measures have many applications, they do not directly lend themselves to fine-grained analysis across multiple scales. We define a local variant of the tree edit distance and apply it towards local comparative analysis of merge trees with support for finer analysis. We also present experimental results on time-varying scalar fields, 3D cryo-electron microscopy data, and other synthetic data sets to show the utility of this approach in applications like symmetry detection and feature tracking.
Removal of the neonicotinoid insecticide acetamiprid from wastewater using heterogeneous photocatalysis

ABSTRACT Due to its high solubility in water, a large amount of the neonicotinoid insecticide acetamiprid persisting in the soil of treated crops enters surface water or groundwater. The aim of this study was to investigate the photocatalytic degradation of acetamiprid in an aqueous medium. The experiments were carried out in an annular suspension reactor operating in recirculated batch mode and using a UV-A lamp as the radiation source. An appropriate modification of the commercial TiO2-P25 photocatalyst was carried out to reduce its band gap energy and electron–hole recombination as well as to extend the visible light range of TiO2. The photodegradation study was carried out using a three-factor two-stage Box–Behnken experimental design to investigate the main effects and interactions between the operating variables, such as solution pH, initial concentration of acetamiprid, and amount of photocatalyst. The efficiency of the processes was determined by high performance liquid chromatography. The first-order pseudo-reaction kinetic model, as a simplification of the models of Langmuir–Hinshelwood under conditions of relatively low acetamiprid concentration, was applied and the reaction rate constants were estimated. The results of the study showed that the initial concentration of the pollutant was the most influential factor for the photocatalytic degradation process. Using ANOVA analysis, a linear model was established to predict the system behaviour at different operating conditions. The highest conversion and rate constant of acetamiprid degradation were recorded in the experiment with the lowest tested concentration of acetamiprid (2 mg/L), the average concentration of photocatalyst (60 mg) and at pH 8. GRAPHICAL ABSTRACT
Antimicrobial‐induced oral dysbiosis exacerbates naturally occurring alveolar bone loss

Periodontitis‐mediated alveolar bone loss is caused by dysbiotic shifts in the commensal oral microbiota that upregulate proinflammatory osteoimmune responses. The study purpose was to determine whether antimicrobial‐induced disruption of the commensal microbiota has deleterious effects on alveolar bone. We administered an antibiotic cocktail, minocycline, or vehicle‐control to sex‐matched C57BL/6T mice from age 6‐ to 12 weeks. Antibiotic cocktail and minocycline had catabolic effects on alveolar bone in specific‐pathogen‐free (SPF) mice. We then administered minocycline or vehicle‐control to male mice reared under SPF and germ‐free conditions, and we subjected minocycline‐treated SPF mice to chlorhexidine oral antiseptic rinses. Alveolar bone loss was greater in vehicle‐treated SPF versus germ‐free mice, demonstrating that the commensal microbiota drives naturally occurring alveolar bone loss. Minocycline‐ versus vehicle‐treated germ‐free mice had similar alveolar bone loss outcomes, implying that antimicrobial‐driven alveolar bone loss is microbiota dependent. Minocycline induced phylum‐level shifts in the oral bacteriome and exacerbated naturally occurring alveolar bone loss in SPF mice. Chlorhexidine further disrupted the oral bacteriome and worsened alveolar bone loss in minocycline‐treated SPF mice, validating that antimicrobial‐induced oral dysbiosis has deleterious effects on alveolar bone. Minocycline enhanced osteoclast size and interface with alveolar bone in SPF mice. Neutrophils and plasmacytoid dendritic cells were upregulated in cervical lymph nodes of minocycline‐treated SPF mice. Paralleling the upregulated proinflammatory innate immune cells, minocycline therapy increased TH1 and TH17 cells that have known pro‐osteoclastic actions in the alveolar bone. This report reveals that antimicrobial perturbation of the commensal microbiota induces a proinflammatory oral dysbiotic state that exacerbates naturally occurring alveolar bone loss.
Asparagine reinforces mTORC1 signaling to boost thermogenesis and glycolysis in adipose tissues

Brown and beige fat are specialized for energy expenditure by dissipating energy from glucose and fatty acid oxidation as heat. While glucose and fatty acid metabolism have been extensively studied in thermogenic adipose tissues, the involvement of amino acids in regulating adaptive thermogenesis remains little studied. Here, we report that asparagine supplementation in brown and beige adipocytes drastically upregulated the thermogenic transcriptional program and lipogenic gene expression, so that asparagine‐fed mice showed better cold tolerance. In mice with diet‐induced obesity, the asparagine‐fed group was more responsive to β3‐adrenergic receptor agonists, manifesting in blunted body weight gain and improved glucose tolerance. Metabolomics and 13C‐glucose flux analysis revealed that asparagine supplement spurred glycolysis to fuel thermogenesis and lipogenesis in adipocytes. Mechanistically, asparagine stimulated the mTORC1 pathway, which promoted expression of thermogenic genes and key enzymes in glycolysis. These findings show that asparagine bioavailability affects glycolytic and thermogenic activities in adipose tissues, providing a possible nutritional strategy for improving systemic energy homeostasis.
Loop Closure Detection by Using Global and Local Features With Photometric and Viewpoint Invariance

Loop closure detection plays an important role in many Simultaneous Localization and Mapping (SLAM) systems, while the main challenge lies in the photometric and viewpoint variance. This paper presents a novel loop closure detection algorithm that is more robust to the variance by using both global and local features. Specifically, the global feature with the consolidation of photometric and viewpoint invariance is learned by a Siamese Network from the intensity, depth, gradient and normal vectors distribution. The local feature with rotation invariance is based on the histogram of relative pixel intensity and geometric information like curvature and coplanarity. Then, these two types of features are jointly leveraged for the robust detection of loop closures. The extensive experiments have been conducted on the publicly available RGB-D benchmark datasets like TUM and KITTI. The results demonstrate that our algorithm can effectively address challenging scenarios with large photometric and viewpoint variance, which outperforms other state-of-the-art methods.
Occurrence of Ulcerative Lesions in Sea Stars (Asteroidea) of the Northern Gulf of California, USA

Abstract: To assess the variation of sea star (Asteroidea) populations in the Northern Gulf of California and look for evidence of sea star ulcerative lesions, counts of sea star species were recorded in 2019 using a standard belt-transect technique of 30 m2. During surveys, scuba divers also measured sea stars' diameter and examined them for ulcerative lesions. Ulcerative lesions were noted on Phataria unifascialis only. To verify changes in abundance and size of the two most abundant species, P. unifascialis and Pharia pyramidata, historical data from 2009, 2010, and 2016 were used as comparison and using the same methodology. To evaluate differences in abundance or diameter in sea star species over time, analysis of variance tests were used. We found a significant reduction in diameter for the species P. unifascialis and P. pyramidata over time (<0.0001), but only P. unifascialis also showed a significant decrease in abundance (P=0.018). The decrease in diameter recorded for these two species, along with the signs of ulcerative lesions found on one of them in 2019, suggest that a potential mortality event occurred and, as a result, new younger (i.e., smaller) recruits could be recovering the population. These results highlight the importance of population monitoring to understand complex reef community dynamics.
A Mixed-Initiative Approach to Reusing Infographie Charts

Infographic bar charts have been widely adopted for communicating numerical information because of their attractiveness and memorability. However, these infographics are often created manually with general tools, such as PowerPoint and Adobe Illustrator, and merely composed of primitive visual elements, such as text blocks and shapes. With the absence of chart models, updating or reusing these infographics requires tedious and error-prone manual edits. In this paper, we propose a mixed-initiative approach to mitigate this pain point. On one hand, machines are adopted to perform precise and trivial operations, such as mapping numerical values to shape attributes and aligning shapes. On the other hand, we rely on humans to perform subjective and creative tasks, such as changing embellishments or approving the edits made by machines. We encapsulate our technique in a PowerPoint add-in prototype and demonstrate the effectiveness by applying our technique on a diverse set of infographic bar chart examples.
Evaluating the HLA-G (rs1063320) genetic variant and risk of human papillomavirus infection: a meta-analysis of 953 cases and 877 controls

Abstract Human leukocyte antigen-G (HLA-G) has immune-modulatory functions. Although the role of genetic variant HLA-G (rs1063320) in susceptibility to human papillomavirus (HPV) infection has been widely considered, it is still a matter of discussion. In order to shed light on the issue, we, therefore, conducted a meta-analysis to evaluate the common impact of the HLA-G (rs1063320) variant on susceptibility to HPV infection. Subsequently, the distribution of genotypes, genotyping techniques and ethnicity groups was collected, and general analyses were performed. A total number of five studies with 953 cases and 877 controls were found to meet our criteria. The polymorphism of HLA-G (rs1063320) was evaluated. This is the first meta-analysis to explore the connection between the HLA-G 3′ UTR + 3142C/G (rs1063320) genetic variant and the risk of HPV infection. Our results showed no association between the variant of HLA-G 3′ UTR + 3142C/G (rs1063320) and susceptibility to HPV infection in studied target populations. Impact Statement What is already known on this subject? Human papillomavirus (HPV) is the most widespread sexually transmitted infection in both men and women all over the world. It is correlated with prominent load of diseases and malignancies, including anogenital warts and anogenital and oropharyngeal cancers. In recent years, several studies manifested that different SNPs located on special genes seems to influence HPV infection risk. What the results of this study add? Our findings disclosed no relation between the variant of HLA-G 3′ UTR + 3142C/G (rs1063320) and vulnerability to HPV infection in the target individuals. What are the implications of these findings for clinical practice and/or further research? The findings in current survey may offer a basis for further study on HLA-G variant in future investigation.
It gets better: childhood sexual abuse and trauma symptoms in female older adults

ABSTRACT While there has been great deal of research conducted on the effects of child sexual abuse (CSA) on trauma symptoms in children and adults, there is less knowledge on the effects on trauma symptoms in female older adult CSA survivors. The aim of this study was to investigate current symptoms of trauma in adult female survivors of child sexual abuse across each successive decade, beginning with eighteen year olds. This retrospective, anonymous online study gathered a sample of 223 adult female survivors of CSA (38 of whom were aged 50–59 (17%), and 20 of whom were 60+ years of age (9%)), and surveyed their trauma history and their current symptomology. In our sample, the survivors with the most severe trauma symptoms were between 18 and 29 years old. Each subsequent decade reported fewer trauma symptoms, with respondents in the 60+ age group reporting the lowest trauma symptom severity. While a cross-sectional study does not allow us to evaluate individuals’ experiences over time, these results suggest that the negative impacts of CSA may abate over the life course. Future research should consider these questions longitudinally to explore whether these results are related to survivorship (those with worse outcomes dying younger) and whether these effects endure as female older adults experience physical and mental challenges in later life.
Sustained latanoprost release from PEGylated solid lipid nanoparticle-laden soft contact lens to treat glaucoma

Abstract Contact lens have been proposed as a mean of ocular drug delivery, but the conventional soaking method to load hydrophobic drugs, such as latanoprost shows low drug loading and high burst release with alteration in the critical lens properties. In this paper, a novel latanoprost-loaded PEGylated solid lipid nanoparticles (LP-pSLNs) were developed to increase the latanoprost loading capacity of contact lenses (LP-pSLN-L), while also sustaining ocular drug delivery. The pSLNs were spherical in shape with an average size of 105‒132 nm (nanometer) and a zeta potential ranging from ‒29.1 to ‒26.7 mV (millivolt). The LP-pSLNs led to improved swelling, transmittance, and protein adherence of the lens compared to the non-pegylated SLNs congeners (LP-SLN-L) and conventional soaked lens (LP-SM-L). The LP-SM-L lens showed low drug loading, high burst release, and a short release duration of 24 h. The LP-SLN-L and LP-pSLN-L lenses showed high drug uptake and sustained drug release up to 120 h and 96 h, respectively. The pegylation reduced the size of nanoparticles and improved the drug loading capacity, while the release rate was high in the initial hours. The LP-pSLN-L lens was found to be safe based in histopathological studies. In animal studies, the LP-pSLN-10-L batch showed high drug concentration at all-time points up to 96 h compared to the LP-SM-L and eye drop solution. In conclusion, pSLNs improved the latanoprost loading in the contact lens and showed sustained drug release, and thus can be used as a substitute to eye drop therapy.
MicroRNA-934 facilitates cell proliferation, migration, invasion and angiogenesis in colorectal cancer by targeting B-cell translocation gene 2

ABSTRACT Colorectal cancer (CRC) is a global public health issue with increasing prevalence. MicroRNA-934 (miR-934) is a kind of non-coding RNA involved in the regulation of diverse cancers. Though previous researches have revealed part of association between miR-934 and CRC, the role of miR-934 in CRC pathogenesis has not been completely explored yet. In this study, we aim to investigate the effect of miR-934 on cell proliferation, migration, invasion and angiogenesis in CRC. Accordingly, miR-934 was found to be over-expressed in SW480 and HCT116 cells, two typical CRC cell lines. Meanwhile, miR-934 knockdown significantly inhibited cell proliferation and induced cell cycle arrest in SW480 and HCT116 cells. It was further validated that miR-934 knockdown displayed an inhibitory effect on cell migration and invasion in SW480 and HCT116 cells. Additionally, miR-934 deficiency markedly decreased VEGF expression in SW480 and HCT116 cells and suppressed capability of CRC cells to promote tube formation in vascular endothelial cells, which suggests the pro-angiogenesis role of miR-934 in vitro. Dual luciferase reporter assay further showed that miR-934 directly bound to B-cell translocation gene 2 (BTG2). BTG2 knockdown reversed the inhibitory effect of miR-934 silencing on cell proliferation, migration, invasion, and angiogenesis in SW480 and HCT116 cells. In summary, this study suggests that miR-934 facilitates CRC progression by targeting BTG2, and further highlights the role of miR-934 in pathogenesis of CRC.