Miracle-dz/UniFAR-FTUs huggingface dataset:
Open the Pod Bay Door: Using Ontology to Understand Instructions

There have been a great deal of developments and implementations for conversational robots like Amazon Alexa, and Google Home. Yet, little research has been done for robots to understand a more rigorously structured, instruction-wise natural language. In this paper, we present an ontology approach to convert instructions from natural language to logical formulas, Process Speciﬁcation Language (PSL) in this case. Verbs, therefore, are treated as indication of actions or processes and are decomposed semantically to understand meanings. As a method of evaluating this approach, verbs, originally in PSL, are worked towards natural language. In this paper, we present how to take natural language instructions and map them to appropriate cutting classes; and moreover, we present the capability of this ontology-centered approach to go in a reverse direction (from PSL to natural language).
Sensory and physicochemical quality of ‘frescal’ sausage from young bulls’ meat fed with levels of licuri cake

Abstract The study evaluated the quality of ‘frescal’ sausage obtained from bulls fed diets containing various amounts of licuri cake. Thirty-two young Nellore bulls averaging 24 months in age and with an initial body weight of 368 ± 32 kg were housed in individual pens and distributed in a randomised experimental design with four treatments: 0, 7, 14 or 21% licuri cake inclusion in dry matter content of the diet. The inclusion of licuri cake in the diets of the bulls did not affect the chemical composition (p > .05). However, there was a linear increase (p = .033) in the cooking weight loss of the sausage. There were no effect of licuri cake inclusion in young bulls diet on pH (p = .097), lightness L* (p = .602) and yellowness b* (p = .692) of the ‘frescal’ sausage manufactured; however, there was a quadratic effect on the redness a* (p = .035) and chrome C* (p = .033). The panellists preferred the appearance of the sausage without licuri cake inclusion. There was no difference between 0% and 14% levels (DM basis) of licuri cake inclusion (p > .05) on aroma, tenderness, juiciness or overall acceptance in ‘frescal’ sausage. However, all characteristics were best evaluated in diets without including licuri (0%). It is not recommended licuri cake inclusion as an alternative feed source in the diets of young Nellore bulls because of decrease in redness and saturation (chrome) colour indexes and increase in cooking loss resulting in the reduction of appearance, juiciness and overall acceptance for consumption of ‘frescal’ sausage despite without affecting its chemical composition.
Multidecadal Seesaw in Hadley Circulation Strength Between the Two Hemispheres Caused by the Atlantic Multidecadal Variability

Multidecadal variations in Hadley circulation (HC) strength have been observed during the historical period, which have significant implications for global and regional climate. However, the relationship between HC intensities in the two hemispheres remains unclear. In this study, we identify an interhemispheric seesaw in the annual HC strength at multidecadal timescales. This seesaw pattern physically corresponds to the meridional movement of the ascending branch of annual HC, leading to strengthened HC in one hemisphere and weakened HC in the other. The HC strength seesaw strongly correlates with the tropical land surface precipitation at multidecadal timescales, particularly for the monsoonal land regions. Further analyses link the HC strength seesaw to the Atlantic multidecadal variability (AMV). A suite of Atlantic Pacemaker experiments successfully reproduces the multidecadal HC strength seesaw and its relation to the AMV. The Northern Hemisphere SST warming associated with the positive AMV phase induces a northward shift of the upward branch of HC, and the Southern Hemispheric HC is strengthened in contrast to the weakened Northern Hemispheric HC. Comparisons of the North Atlantic SST forced HC changes between the coupled air–sea model and stand-alone atmospheric model suggest an important and non-negligible role of the SST footprint of AMV over the Indo-Pacific basins. The AMV and its Indo-Pacific SST footprint make a comparable contribution to the SST changes in the Northern Hemisphere, which control the movement of the HC ascending branch and thereby the interhemispheric seesaw in HC strength.
Fungal Endophyte Colonization Patterns Alter Over Time in the Novel Association Between Lolium perenne and Epichloë Endophyte AR37

Infection of the pasture grass Lolium perenne with the seed-transmitted fungal endophyte Epichloë festucae enhances its resilience to biotic and abiotic stress. Agricultural benefits of endophyte infection can be increased by generating novel symbiotic associations through inoculating L. perenne with selected Epichloë strains. Natural symbioses have coevolved over long periods. Thus, artificial symbioses will probably not have static properties, but symbionts will coadapt over time improving the fitness of the association. Here we report for the first time on temporal changes in a novel association of Epichloë strain AR37 and the L. perenne cultivar Grasslands Samson. Over nine generations, a seed maintenance program had increased the endophyte seed transmission rates to > 95% (from an initial 76%). We observed an approximately fivefold decline in endophyte biomass concentration in vegetative tissues over time (between generations 2 and 9). This indicates strong selection pressure toward reducing endophyte-related fitness costs by reducing endophyte biomass, without compromising the frequency of endophyte transmission to seed. We observed no obvious changes in tillering and only minor transcriptomic changes in infected plants over time. Functional analysis of 40 plant genes, showing continuously decreasing expression over time, suggests that adaptation of host metabolism and defense mechanisms are important for increasing the fitness of this association, and possibly fitness of such symbioses in general. Our results indicate that fitness of novel associations is likely to improve over time and that monitoring changes in novel associations can assist in identifying key features of endophyte-mediated enhancement of host fitness.
Modelling and Analysis the Network Model Controlled by Mediation-Driven Attachment Rule

The problem of modeling scale-free networks is considered. Media-tion-driven attachment rule with constant number of incoming links is studied. According to that rule, new nodes do not need access to node statistics of the network, although the probability of joining to existing node is determined by its degree, this information is used implicitly. Such feature looks quite natural and is a key advantage of mediation-driven attachment rule. The dependence of the scaling factor of nodes degree distribution on the control parameter – the number of links associated with incoming nodes – is analyzed both analytically and by numerical simulation.
An ASP Approach for Arteries Classification in CT-scans

Automated segmentation of CT scans is the ﬁrst step in the pipeline for the interpretation and identiﬁcation of potential pathologies in human organs. Several methods based on Machine Learning are currently available, even if their precision is still outperformed by medical doctors. In this ﬁeld there are some intrinsic limitations to ML approaches, such as the cost and time to acquire high quality annotated scans for training; a considerably high variability of organs morphology due to age, health conditions, genetics; acquisition noise. This paper outlines a new methodology based on Answer Set Programming, which returns reliable, easy-to-program and explainable interpretations. In particular, we focus on the CT scan analysis and retrieval of tree-like structure, corresponding to main blood vessels (arteries) arrangement. The structure is compared to the knowledge base of vessels contained in anatomy text-books. The mapping of vessels names is computed by an ASP program. This preliminary step produces a robust input to a reasoner for the multi-organ labeling and localization problem.
Systematic and Morphogeometric Analyses of Pachyrukhinae (Mammalia, Hegetotheriidae) from the Huayquerías, Mendoza (Argentina): Biostratigraphic and Evolutionary Implications

ABSTRACT We present new remains of Pachyrukhinae (Hegetotheriidae) from the Huayquerías del Este (Mendoza, Argentina). We identify Tremacyllus impressus, proposing T. subdiminutus as a synonym and providing new data on postcranial bones for this taxon. Tremacyllus specimens from Mendoza reveal a wide and continuous morphological variation that encompasses the morphological differences of species previously considered valid, emphasizing the need for a systematic study focused on all representatives of the genus. We also recognize Paedotherium typicum, which shows a combination of features differing from other species of the genus. The large sample allows us to improve the diagnosis for both the genus Tremacyllus and the species T. impressus and P. typicum. Both species coexist in the Huayquerías Formation; T. impressus is also present in the Tunuyán Formation, whereas the specimens recognized as Paedotherium in this unit were not identifiable at species level. Applying geometric morphometric methods on the dentition, we partially support the taxonomic decisions. We present the first phylogenetic analysis including all the species of Tremacyllus and Paedotherium, using morphological characters of skull and postcranium. According to our results, Tremacyllus is a monophyletic group supported by two synapomorphies, whereas Paedotherium is paraphyletic, in agreement with the prior hypothesis. The record of Paedotherium typicum presented here extends the biochron of this taxon into the late Miocene, which is relevant for establishing biostratigraphic and paleobiogeographic affinities with other Miocene localities.
Editorial: Blockchain Ecosystem - Technological and Management Opportunities and Challenges

Blockchain is increasingly deployed in a broad range of sectors, ranging from banking and finance to manufacturing to energy to transportation, and so on. While many technological and business related blockchain developments and challenges have been identified, many of these engineering and management challenges have not been addressed. The ongoing interest in this topic is also partly evidenced by the large number of submissions we received in this special issue. Of the 200 submissions, only 39 articles were eventually accepted after several rounds of rigorous reviews (i.e., acceptance rate of 19.5%). In this editorial, we report on the findings from the first 36 articles on a broad range of topics (e.g., supply chain, financial technology, Internet of Things, smart city, healthcare, security, privacy, and blockchain building blocks such as consensus algorithms). Hopefully, the findings reported in these 36 accepted articles will provide sustainable solutions for existing and future blockchain systems and platforms.
Contribution of Histamine to Nociceptive Behaviors Induced by Intrathecally Administered Cholecystokinin-8

The involvement of spinal release of histamine in the nociceptive behaviors induced by cholecystokinin-8 (CCK-8) was investigated in mice. Intrathecal (i.t.) injection of CCK-8 elicited the nociceptive behaviors consisting of biting and licking. The nociceptive behaviors induced by i.t. treatment with CCK-8 showed two bell-shaped patterns. The histamine H3 receptor antagonist significantly promoted the nociceptive behaviors induced by CCK-8 at doses of 1–100 fmol and 100 pmol. The nociceptive behaviors elicited by CCK-8 was inhibited by i.t. administration of the CCK-B receptor antagonist in a dose-dependent manner, but not by the CCK-A receptor antagonist. The nociceptive behaviors induced by CCK-8 were markedly suppressed by i.t. pretreatment with antiserum against histamine and were abolished in histidine decarboxylase-deleted gene mice. In histamine H1 receptor-deleted gene mice, the nociceptive behaviors induced at both 10 amol and 10 pmol of CCK-8 were not affected. The tachykinin neurokinin-1 (NK1) receptor antagonists inhibited CCK-8 (10 pmol)-induced nociceptive behaviors in a dose-dependent manner. CCK-8 (10 amol)-induced nociceptive behaviors was not antagonized by co-administration with the tachykinin NK1 receptor antagonists. The nociceptive behaviors elicited by CCK-8 were inhibited by i.t. administration of the antagonist for the N-methyl-D-aspartate (NMDA) receptor in a dose-dependent manner. Our results suggest that the nociceptive behaviors induced by i.t. administration of CCK-8 (10 pmol) are mediated through the spinal release of histamine and are elicited via activation of the tachykinin NK1 and NMDA receptors, whereas the nociceptive behaviors induced by i.t. administration of CCK-8 (10 amol) are mediated through the spinal release of histamine and elicited via NMDA receptor activation.
Influence of Climate and Duration of Stream Water Presence on Rates of Litter Decomposition and Nutrient Dynamics in Temporary Streams and Surrounding Environments of Southwestern USA

Ephemeral and intermittent streams are increasing with climate and land use changes, and alteration in stream water presence or flow duration will likely affect litter decomposition and nutrient dynamics in channel and riparian zones more than uplands. To investigate the influence of varying climate and streamflow regimes on rates of decomposition and associated nutrient dynamics, we used a space-for-time substitution design in which we deployed a common leaf litter across a range of ephemeral to seasonally- intermittent stream reaches (10) and landscape positions (channel, riparian, upland) in Arizona, USA over an 18-month period. We also measured soil physio-chemical properties and nutrient dynamics associated with these reaches and positions. Consistent with expectations, rates of litter decomposition (k) decreased significantly in the channels as cumulative percentage (%) of water presence decreased below 40%. Indeed, differences in cumulative duration of water presence as well as channel bed material silt content explained 80% of the variation in k across flow regimes. In contrast, decay rates of the common litter across sites were surprisingly similar in upland and riparian positions despite large differences in climate, specifically precipitation (160–516 mm). Relatively similar litter nitrogen immobilization and soil moisture in upland and riparian environments helped to explain the lack of difference in k and soil nutrient dynamics in these environments. Collectively, our findings indicate that stream water presence may be a more important indicator of ephemeral and intermittent stream function than streamflow alone and that riparian zones in these dryland regions may be less responsive to changes in climate and associated subsidies of streamflow.
Perceived Work Uncertainty and Creativity During the COVID-19 Pandemic: The Roles of Zhongyong and Creative Self-Efficacy

Research on the relationship between work stress and employee creativity has been mixed. This study on 823 female attorneys in China identifies employee creative self-efficacy and employees’ value of Zhongyong as moderators in this relationship. In this study, work stress is assessed by the perceived work uncertainty brought on by the COVID-19 pandemic. Our study found that although Zhongyong, which involves an employee’s ambidextrous thinking, can be helpful for employee creativity, low levels of Zhongyong are better for employee creativity in an uncertain context such as the COVID-19 pandemic, due to the fact that high levels of Zhongyong result in an overemphasis on compromise and giving in when times are uncertain. Instead, low levels of Zhongyong will decrease employees’ concern about others’ acceptance in an uncertain environment. In addition, creative self-efficacy motivates employees to engage in creative efforts during times of work uncertainty. In sum, this study found that employee perceived work uncertainty brought on by COVID-19 enhances employee creativity when an employee’s value of Zhongyong is low and creative self-efficacy is high.
Arterial Stiffness and Hypertension in the Elderly

Hypertension prevalence increases with age. Age and high blood pressure are the two main determinants of arterial stiffness. In elderly hypertensives, large arteries stiffen and systolic and pulse pressures increase, due to wave reflections. A major reason for measuring arterial stiffness in clinical practice in elderly hypertensive patients comes from the repeated demonstration that arterial stiffness and wave reflections have a predictive value for CV events. A large body of evidence has been published during the last two decades, concerning the epidemiology, pathophysiology, and pharmacology of large arteries in hypertension in various settings of age. Particularly, two expert consensus documents have reviewed the methodological agreements for measuring arterial stiffness. The concepts of Early Vascular Aging (EVA) and Supernormal Vascular Aging (SUPERNOVA) help to better understand on which determinants of arterial stiffness it is possible to act, in order to limit target organ damage and cardiovascular complications. This review will address the issues of the cellular and molecular mechanisms of arterial stiffening in elderly hypertensives, the consequences of arterial stiffening on central systolic and pulse (systolic minus diastolic, PP) pressures and target organs, the methodology for measuring arterial stiffness, central pulse pressure and wave reflection, the epidemiological determinants of arterial stiffening in elderly hypertensives, the pharmacology of arterial destiffening, and how the concepts of EVA and SUPERNOVA apply to the detection of organ damage and prevention of CV complications.
Motley Crew: Overview of the Currently Available Phage Diversity

The first complete genome that was sequenced at the beginning of the sequencing era was that of a phage, since then researchers throughout the world have been steadily describing and publishing genomes from a wide array of phages, uncovering the secrets of the most abundant and diverse biological entities known to man. Currently, we are experiencing an unprecedented rate of novel bacteriophage discovery, which can be seen from the fact that the amount of complete bacteriophage genome entries in public sequence repositories has more than doubled in the past 3 years and is steadily growing without showing any sign of slowing down. The amount of publicly available phage genome-related data can be overwhelming and has been summarized in literature before but quickly becomes out of date. Thus, the aim of this paper is to briefly outline currently available phage diversity data for public acknowledgment that could possibly encourage and stimulate future “depth” studies of particular groups of phages or their gene products.
What Say You: An Ontological Representation of Imperative Meaning for Human-Robot Interaction

There is a distinct difference between modeling linguistic knowledge and knowledge that is expressed linguistically. The research effort described herein concerns the latter, i.e. how to model the output of a natural language understanding system in a formal ontology in such a way that robotic agents can carry out the tasks given to them via natural language. For this, we build on a given foundational ontology that is suitable for our requirements and introduce the basic modeling principles and design patterns to model and represent the meaning of instructions. Linguistically, our model is informed by constructional approaches to language understanding, i.e. embodied-and ﬂuid construction grammar. Ontologically, we base our model on the foundational framework provided by the Dolce Ultra Light + Descriptions and Situations ontology. The proposed model, called SOMA-SAY, is part of a larger system of ontologies that are employed in the Everyday Activity Science and Engineering collaborative research center.
Horizontal Gene Transfer and Tandem Duplication Shape the Unique CAZyme Complement of the Mycoparasitic Oomycetes Pythium oligandrum and Pythium periplocum

Crop protection strategies that are effective but that reduce our reliance on chemical pesticides are urgently needed to meet the UN sustainable development goals for global food security. Mycoparasitic oomycetes such as Pythium oligandrum and Pythium periplocum, have potential for the biological control of plant diseases that threaten crops and have attracted much attention due to their abilities to antagonize plant pathogens and modulate plant immunity. Studies of the molecular and genetic determinants of mycoparasitism in these species have been less well developed than those of their fungal counterparts. Carbohydrate-active enzymes (CAZymes) from P. oligandrum and P. periplocum are predicted to be important components of mycoparasitism, being involved in the degradation of the cell wall of their oomycete and fungal prey species. To explore the evolution of CAZymes of these species we performed an in silico identification and comparison of the full CAZyme complement (CAZyome) of the two mycoparasitic Pythium species (P. oligandrum and P. periplocum), with seven other Pythium species, and four Phytophthora species. Twenty CAZy gene families involved in the degradation of cellulose, hemicellulose, glucan, and chitin were expanded in, or unique to, mycoparasitic Pythium species and several of these genes were expressed during mycoparasitic interactions with either oomycete or fungal prey, as revealed by RNA sequencing and quantitative qRT-PCR. Genes from three of the cellulose and chitin degrading CAZy families (namely AA9, GH5_14, and GH19) were expanded via tandem duplication and predominantly located in gene sparse regions of the genome, suggesting these enzymes are putative pathogenicity factors able to undergo rapid evolution. In addition, five of the CAZy gene families were likely to have been obtained from other microbes by horizontal gene transfer events. The mycoparasitic species are able to utilize complex carbohydrates present in fungal cell walls, namely chitin and N-acetylglucosamine for growth, in contrast to their phytopathogenic counterparts. Nonetheless, a preference for the utilization of simple sugars for growth appears to be a common trait within the oomycete lineage.
Voice assistants in hospital triage operations

This paper analyzes the creation and usage of a voice assistant for the triage of emergency room patients. This human-centred intelligent system strongly relies on Mycroft, an extensible open source voice assistant. The patients are able to declare their symptoms to the agent, which recognizes the urgency and acts accordingly. The software can even provide useful medical informations to the users.