Miracle-dz/UniFAR-FTUs huggingface dataset:
Risk of reinfection after seroconversion to SARS-CoV-2: A population-based propensity-score matched cohort study

Importance: Serological assays detecting specific IgG antibodies generated against the Spike protein following Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection are being widely deployed in research studies and clinical practice. However, the duration and the effectiveness of the protection conferred by the immune response against future infection remains to be assessed in a large population. Objective: To estimate the incidence of newly acquired SARS-CoV-2 infections in seropositiveindividuals from a population-based sample as compared to seronegative controls. Design: Retrospective longitudinal propensity-score matched cohort study. Setting: A seroprevalence survey including a population-based representative sample of the population from the canton of Geneva (Switzerland) was conducted between April and June 2020, immediately after the first pandemic wave. Each individual included in the seroprevalence survey was linked to a state centralized registry compiling virologically confirmed SARS-CoV-2 infections since the beginning of the pandemic. Participants: Participants aged twelve years old and over, who developed anti-spike IgG antibodies were matched one-to-two to seronegative controls, using a propensity-score including age, gender, immunodeficiency, body mass index, smoking status and education level. Exposure: SARS-CoV-2 seropositivity. Main outcomes and measures: Our primary outcome was virologically confirmed SARS-CoV-2 infections which occurred from serological status assessment in April-June 2020 to the end of the second pandemic wave (January 2021). Additionally, incidence of infections, rate of testing and proportion of positive tests were analysed. Results: Among 8344 serosurvey participants, 498 seropositive individuals were selected and matched with 996 seronegative controls. After a mean follow-up of 35.6 (Standard Deviation, SD: 3.2) weeks, 7 out of 498 (1.4%) seropositive subjects had a positive SARS-CoV-2 test, of which 5 (1.0%) were considered as reinfections. By contrast, infection rate was significantly higher in seronegative individuals (15.5%, 154/996) during a similar mean follow-up of 34.7 (SD 3.2) weeks, corresponding to a 94% (95%CI 86% to 98%, P<0.001) reduction in the hazard of having a positive SARS-CoV-2 test for seropositive subjects. Conclusions and relevance: Seroconversion after SARS-CoV-2 infection confers protection to successive viral contamination lasting at least 8 months. These findings could help global health authorities establishing priority for vaccine allocation.
Agreement of parent- and child-reported wheeze: are they associated with FeNO and lung function?

In epidemiological studies, childhood asthma is usually assessed with questionnaires directed at parents or children, and these may give different answers. We studied how well parents and children agreed when asked to report symptoms of wheeze and investigated whose answers were closer to measurable traits of asthma. LuftiBus in the school is a cross-sectional survey of respiratory health among Swiss schoolchildren aged 6-17 years. We applied questionnaires to parents and children asking about wheeze and exertional wheeze in the past year. We assessed agreement between parent-child answers with kappa (k), and associations of answers from children and parents with physiological measurements (i.e. FeNO and FEV1/FVC), using quantile regression. We received questionnaires from 3079 children and their parents. Agreement was poor for reported wheeze (k=0.37) and exertional wheeze (k=0.36). Median FeNO varied when wheeze was reported by children (19 ppb, IQR: 9-44), parents (22 ppb, IQR: 12-46), both (31 ppb, IQR: 16-55) or neither (11 ppb, IQR: 7-19). Median absolute FEV1/FVC was the same when wheeze was reported by children (84%, IQR: 78-89) and by parents (84%, IQR: 78-89), lower when reported by both (82%, IQR: 78-87) and higher when reported by neither (87%, IQR: 82-91). For exertional wheeze findings were similar. Results did not differ by age or sex. Our findings suggest that surveying both parents and children and combining their responses can help us to better identify children with measurable asthma traits.
Variable band gap conjugated polymers for optoelectronic and redox applications

We report here on the utilization of variable band gap conjugated polymers for optoelectronic redox applications comprising organic photovoltaics, color tunable light emitting diodes, and electrochromics. For the evaluation of morphology in photovoltaicdevices, atomic force microscopy, and optical microscopy provided direct visualization of the blend film structure. The evolution of the morphology in two and three component blends incorporating poly[2-methoxy-5-(2-ethylhexyloxy)-1,4-phenlenevinylene] (MEH-PPV), poly(methylmethacrylate) (PMMA), and [6, 6]-phenyl C_61-butyric acid methyl ester (PCBM) was investigated. It was found that while insulating PMMA can be used to modulate the phase separation in these blends, a bicontinuous network of donor and acceptor was required to achieve the best device results. Similarily, a MEH-PPVcopolymer with a decreased conjugation length has been used for investigating inter- and intramolecular photoinduced charge transfer in the presence of PMMA and PCBM.We fabricated MEH-PPV/PCBM solar cells that have power conversion efficiencies up to 1.5% with a range of 0.7-1.5%, dependent on the nature of the MEH-PPV used. This further indicates that in addition to blend morphology, polymer structure is critical for optimizing device performance. To this end, the concept of an ideal donor for photovoltaic devices based on poly[2,5-di(3,7-dialkoxy)-cyanoterephthalylidene] is described and two donor-acceptor polymers based on cyanovinylene (CNV) and dioxythiophene are discussed as representative examples of soluble narrow band gap polymers synthesized in our group. For light emitting applications, utilization of two blue emitting conjugated polymers poly (9,9-dioctylfluorene) (PFO) and poly[(9,9-dihexylfluorenyl-2,7-diyl)-co-(9,ethyl-3,6-carbazole)] (PFH-PEtCz)is presented for a color tunable polymer light emitting diode that emits orange, green, and blue light with a voltage range of 7-10 V as a function of the total conjugated polymer content in PMMA and is attributed to the phase separation between the conjugated polymers. Finally, the narrow band gap conjugated polymer, poly[bis(3,4-propylenedioxythiophene-dihexyl)]-cyanovinylene has been characterized for its electrochromic properties, illustrating the multifunctional nature of variable band gap conjugated polymers.
Sorption of Trace Elements on Mineral Surfaces: Modern Perspectives from Spectroscopic Studies, and Comments on Sorption in the Marine Environment

The partitioning (or sorption) of trace elements from aqueous solutions onto mineral surfaces and natural organic matter (NOM) has played a major role in determining the trace element content of natural waters. This review examines sorption processes on mineral surfaces for nine trace elements (Cr, Co, Ni, Cu, Zn, Sr, Cd, Hg, Pb), focusing on the results of modern x-ray spectroscopic studies. Such studies provide unique information on the structure and composition of sorption products, including their mode of attachment to mineral surfaces or functional groups in NOM under in situ conditions (i.e., with aqueous solution present at 25°C). The types of chemical reactions (acid-base, ligand exchange, redox, dissolution/reprecipitation) that can occur at mineral-aqueous solution interfaces are also reviewed, and some of the factors that affect the reactivity of mineral surfaces are discussed, including changes in the geometric and electronic structures of mineral surfaces when they first react with aqueous solutions and constraints on the bonding of adions to surface functional groups imposed by Pauling bond valence sums. A summary of electrical double layer (EDL) theory is presented, including the results of several recent x-ray spectroscopic and parameter regression studies of the EDL for metal-(oxyhydr) oxide-aqueous solution interfaces. The effects of common inorganic and organic complexants on the sorption of trace metal cations at mineral-solution interfaces are considered, in the context of spectroscopic studies where possible. The results of sorption studies of trace metal cations on NOM, common bacteria, and marine biomass are reviewed, and the effects of coatings of NOM and microbial biofilms on cation uptake on mineral surfaces are discussed, based on macroscopic and spectroscopic data. The objective here is to assess the relative importance of inorganic versus organic sorption processes in aquatic systems. The paper concludes with a discussion of the effects of water composition on trace element removal mechanisms, with the aim of providing an understanding of the effects of the high salinity of seawater on trace element sorption processes. The information presented in this review indicates that sorption processes on mineral, NOM, and microbial and algal surfaces, including true adsorption and precipitation, are highly effective at removing trace elements from natural waters and generally supports Krauskopf's (1956) conclusion that such processes are likely responsible for the present trace element concentrations in seawater.
Photophysics of Organic–Inorganic Hybrid Lead Iodide Perovskite Single Crystals

Hybrid organometal halide perovskites have been demonstrated to have outstanding performance as semiconductors for solar energy conversion. Further improvement of the efficiency and stability of these devices requires a deeper understanding of their intrinsic photophysical properties. Here, the structural and optical properties of high‐quality single crystals of CH3NH3PbI3 from room temperature to 5 K are investigated. X‐ray diffraction reveals an extremely sharp transition at 163 K from a twinned tetragonal I4/mcm phase to a low‐temperature phase characterized by complex twinning and possible frozen disorder. Above the transition temperature, the photoluminescence is in agreement with a band‐edge transition, explaining the outstanding performances of the solar cells. Whereas below the transition temperature, three different excitonic features arise, one of which is attributed to a free‐exciton and the other two to bound excitons (BEs). The BEs are characterized by a decay dynamics of about 5 μs and by a saturation phenomenon at high power excitation. The long lifetime and the saturation effect make us attribute these low temperature features to bound triplet excitons. This results in a description of the room temperature recombination as being due to spontaneous band‐to‐band radiative transitions, whereas a diffusion‐limited behavior is expected for the low‐temperature range.
Electrochemical Determination of Tetracycline Using Molecularly Imprinted Polymer Modified Carbon Nanotube-Gold Nanoparticles Electrode

This paper reports the use of a tetracycline (TC) sensor constructed from a combination of molecularly imprinted polymer (MIP) and gold nanoparticles modified multiwall carbon nanotubes (MWNTs-GNPs). The results demonstrated that the amount of recognition sites in the polymer was significantly increased and the electron transfer ability of the sensor was improved. The relationship between the peak current and the TC concentration was linear in the range from 0.1 to 40 mg L−1, and the detection limit was 0.04 mg L−1 (S/N=3). The peak current to TC was 4.3, 6.2 and 6.8 times larger than that of oxytetracycline, chloramphenicol and nafcillin, respectively. Thus, the combination of MIP and MWNTs-GNPs provides a sensitive and selective electrochemical detection method for tetracycline.
Ozonation Kinetics Of o-phenylphenol in Aqueous Solutions

This study investigated the oxidation and reaction kinetics of biocide o-phenylphenol (o-PP) during ozonation. The second-order rate constants for direct reaction of molecular ozone with o-PP were determined in homogenous system using classical and competition kinetics. Obtained values of the second-order rate at pH 2 are equal to (3.79 ± 0.23) × 102 M−1 s−1 and (4.42 ± 0.64) × 102 M−1 s−1, for the two methods, respectively. The rate constant for the dissociated form of o-PP was also determined. It was found that the rate constants for the reaction of o-PP with ozone increase significantly with increasing pH.
Large-area synthesis of WSe2 from WO3 by selenium–oxygen ion exchange

Few-layer tungsten diselenide (WSe2) is attractive as a next-generation electronic material as it exhibits modest carrier mobilities and energy band gap in the visible spectra, making it appealing for photovoltaic and low-powered electronic applications. Here we demonstrate the scalable synthesis of large-area, few-layer WSe2 via replacement of oxygen in hexagonally stabilized tungsten oxide films using dimethyl selenium. Cross-sectional transmission electron microscopy reveals successful control of the final WSe2 film thickness through control of initial tungsten oxide thickness, as well as development of layered films with grain sizes up to several hundred nanometers. Raman spectroscopy and atomic force microscopy confirms high crystal uniformity of the converted WSe2, and time domain thermo-reflectance provide evidence that near record low thermal conductivity is achievable in ultra-thin WSe2 using this method.
Membrane transporter dimerization driven by differential lipid solvation energetics of dissociated and associated states

Over two-thirds of integral membrane proteins of known structure assemble into oligomers. Yet, the forces that drive the association of these proteins remain to be delineated, as the lipid bilayer is a solvent environment that is both structurally and chemically complex. In this study, we reveal how the lipid solvent defines the dimerization equilibrium of the CLC-ec1 Cl-/H+ antiporter. Integrating experimental and computational approaches, we show that monomers associate to avoid a thinned-membrane defect formed by hydrophobic mismatch at their exposed dimerization interfaces. In this defect, lipids are strongly tilted and less densely packed than in the bulk, with a larger degree of entanglement between opposing leaflets and greater water penetration into the bilayer interior. Dimerization restores the membrane to a near-native state and therefore, appears to be driven by the larger free-energy cost of lipid solvation of the dissociated protomers. Supporting this theory, we demonstrate that addition of short-chain lipids strongly shifts the dimerization equilibrium toward the monomeric state, and show that the cause of this effect is that these lipids preferentially solvate the defect. Importantly, we show that this shift requires only minimal quantities of short-chain lipids, with no measurable impact on either the macroscopic physical state of the membrane or the protein's biological function. Based on these observations, we posit that free-energy differentials for local lipid solvation define membrane-protein association equilibria. With this, we argue that preferential lipid solvation is a plausible cellular mechanism for lipid regulation of oligomerization processes, as it can occur at low concentrations and does not require global changes in membrane properties.
On Rank Deficiency in Phenotypic Covariance Matrices

This paper is concerned with rank deficiency in phenotypic covariance matrices: first to establish it is a problem by measuring it, and then proposing methods to treat for it. Significant rank deficiency can mislead current measures of whole-shape phenotypic integration, because they rely on eigenvalues of the covariance matrix, and highly rank deficient matrices will have a large percentage of meaningless eigenvalues. This paper has three goals. The first is to examine a typical geometric morphometric data set and establish that its covariance matrix is rank deficient. We employ the concept of information, or Shannon, entropy to demonstrate that a sample of dire wolf jaws is highly rank deficient. The different sources of rank deficiency are identified, and include the Generalized Procrustes analysis itself, use of the correlation matrix, insufficient sample size, and phenotypic covariance. Only the last of these is of biological interest.Our second goal is to examine a test case where a change in integration is known, allowing us to document how rank deficiency affects two measures of whole shape integration (eigenvalue standard deviation and standardized generalized variance). This test case utilizes the dire wolf data set from Part 1, and introduces another population that is 5000 years older. Modularity models are generated and tested for both populations, showing that one population is more integrated than the other. We demonstrate that eigenvalue variance characterizes the integration change incorrectly, while the standardized generalized variance lacks sensitivity. Both metrics are impacted by the inclusion of many small eigenvalues arising from rank deficiency of the covariance matrix. We propose a modification of the standardized generalized variance, again based on information entropy, that considers only the eigenvalues carrying non-redundant information. We demonstrate that this metric is successful in identifying the integration change in the test case.The third goal of this paper is to generalize the new metric to the case of arbitrary sample size. This is done by normalizing the new metric to the amount of information present in a permuted covariance matrix. We term the resulting metric the ‘relative dispersion’, and it is sample size corrected. As a proof of concept we us the new metric to compare the dire wolf data set from the first part of this paper to a third data set comprising jaws of Smilodon fatalis. We demonstrate that the Smilodon jaw is much more integrated than the dire wolf jaw. Finally, this information entropy-based measures of integration allows comparison of whole shape integration in dense semilandmark environments, allowing characterization of the information content of any given shape, a quantity we term ‘latent dispersion’.
Effect of whole wheat flour on the quality of wheat- baked bread

The use of whole wheat and white wheat flour blends in the production of functional breads was studied. Whole wheat flour was blended with white wheat flour at 10, 20, 30 and 40% substitution level while the 100% white wheat bread served as control. The proximate composition of the various flour blendsused for the preparation of the breads was determined using standard methods. The bread loaves were produced using the straight-dough procedure and were subsequently evaluated for their weight, loaf volume, specific volume and sensory attributes. Proximate analyses results showed an increase in the range of 1.86% for moisture, 1.43% for ash, 3.28% for protein, 1.92% for fat, 2.49% for crude fibre and a decrease in carbohydrates by 10.98% with increasing levels of whole wheat flour in the blends. There was also a decrease in bread volume, specific volume and an increase in weight by 216.31cm 3 , 1.35g/cm 3 and 35.54g respectively, with progressive inclusion of the whole wheat flour. The sensory analysis results showed that replacement of white wheat flour with whole wheat flour up to 20% of substitution level produced acceptable bread which was comparable with the control in terms of the overall acceptability of the bread.
Temperature measurement by micro-Raman scattering spectroscopy in the active zone of AlGaN/GaN high-electron-mobility transistors

The high power RF device performance decreases as the operation temperature increases (e.g. fall of electron mobility impacting the cut-off frequencies and degradation of device reliability). Therefore the determination of device temperature is a key issue for device topology optimisation. In this work the temperature variation of AlGaN/GaN high-electron-mobility transistors grown either on silicon or sapphire substrates under bias operation was measured by micro Raman scattering spectroscopy. The differences in thermal resistance for similar devices grown on the two different substrates were assessed. The thermal resistances of different device topologies were compared in order to optimise the component design. The temperature measurement across the gate and along the component fingers were made to quantify the thermal gradient of the device. Temperature measurement up to a power dissipation of 16 W for a 4 mm development device was carried out and the peak temperature of 650 K was determined.
Mechanisms for Ethanol Electrooxidation on Pt(111) and Adsorption Bond Strengths Defining an Ideal Catalyst

Ethanol electrooxidation on the Pt(111) electrode has been studied with computational theory. Using a solvation model and a modified Poison-Boltzmann theory for electrolyte polarization, standard reversible potentials for forming 17 reaction intermediates in solution were calculated with density functional theory. Reversible potentials for adsorbed intermediates were then determined by inputting calculated adsorption energies into a linear Gibbs energy relationship. A path to CO2 was found where surface potentials were low and close to the calculated 0.004 V reversible potential for the 12 electron oxidation of ethanol. An exception was the 0.49 V potential for forming the OH(ads) from H2O(l), this being required for oxidation of CO(ads) and RH(ads) intermediates. The surface potentials show that acetyl, OCCH3(ads) forms at small positive potentials and decomposes to CH(ads), CH3(ads), and CO(ads), which poison the surface at these potentials. Energy losses due to non-electron transfer reaction steps are small and cause a small shift in the reversible potential for the 12 electron oxidation. Values for adsorption bond strengths over a perfect catalyst were determined. It is concluded that on an ideal catalyst most intermediates will adsorb more weakly and OH more strongly than on Pt(111). © The Author(s) 2014. Published by ECS. This is an open access article distributed under the terms of the Creative Commons Attribution 4.0 License (CC BY, http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse of the work in any medium, provided the original work is properly cited. [DOI: 10.1149/2.0781501jes] All rights reserved.
Biocompatibility of Polyhydroxyalkanoates Synthesized by Bacillus cereus BMH

Polyhydroxyalkanoates (PHAs) are biological polyesters synthesized by many bacteria. The polyesters became the focus of research because of their biodegradability, biocompatibility and the similar physical and chemical properties to those of petroleum derived plastics. A gram-positive strain was isolated from domesticated activated sludge and identified as Bacillus cereus BMH. B. cereus BMH can synthesize PHAs using a wide range of carbon sources. After 36h cultivation in shaken flasks, cell dry-weight was 5.31g/l, PHAs content was 61.2% of cell dry weight which is higher than some other B. cereus reported. The PHAs films showed irregular porous structure under scanning electron microscopy. Biocompatibility of the polyester was evaluated in detail in this article. The polymer was proved of good biocompatibility through Scanning Electron Microscopy (SEM), Fluorescence microscopy observation and CCK-8 assay. It was indicated that the biological polymer had desirable material properties as tissue engineering biomaterials