Miracle-dz/UniFAR-FTUs huggingface dataset:
Integrative Analysis Extracts a Core ceRNA Network of the Fetal Hippocampus With Down Syndrome

Accumulating evidence suggests that circular RNAs (circRNAs)—miRNA–mRNA ceRNA regulatory network—may play an important role in neurological disorders, such as Alzheimer’s disease (AD). Interestingly, neuropathological changes that closely resemble AD have been found in nearly all Down syndrome (DS) cases > 35 years. However, few studies have reported circRNA transcriptional profiling in DS cases, which is caused by a chromosomal aberration of trisomy 21. Here, we characterized the expression profiles of circRNAs in the fetal hippocampus of DS patients (n = 8) and controls (n = 6) by using microarray. MiRNA, mRNA expression profiling of DS from our previous study and scRNA-seq data describing normal fetal hippocampus development (GEO) were also integrated into the analysis. The similarity between circRNAs/genes with traits/cell-types was calculated by weighted correlation network analysis (WGCNA). miRanda and miRWalk2 were used to predict ceRNA network interactions. We identified a total of 7,078 significantly differentially expressed (DE) circRNAs, including 2,637 upregulated and 4,441 downregulated genes, respectively. WGCNA obtained 15 hub circRNAs and 6 modules with cell type–specific expression patterns among scRNA-seq data. Finally, a core ceRNA network was constructed by 14 hub circRNAs, 17 DE miRNA targets and 245 DE mRNA targets with a cell type–specific expression pattern annotation. Known functional molecules in DS or neurodegeneration (e.g., miR-138, OLIG1, and TPM2) were also included in this network. Our findings are the first to delineate the landscape of circRNAs in DS and the first to effectively integrate ceRNA regulation with scRNA-seq data. These data may provide a valuable resource for further research on the molecular mechanisms or therapeutic targets underlying DS neuropathy.
News Editorials: Towards Summarizing Long Argumentative Texts

The automatic summarization of argumentative texts has hardly been explored. This paper takes a further step in this direction, targeting news editorials, i.e., opinionated articles with a well-defined argumentation structure. With Webis-EditorialSum-2020, we present a corpus of 1330 carefully curated summaries for 266 news editorials. We evaluate these summaries based on a tailored annotation scheme, where a high-quality summary is expected to be thesis-indicative, persuasive, reasonable, concise, and self-contained. Our corpus contains at least three high-quality summaries for about 90% of the editorials, rendering it a valuable resource for the development and evaluation of summarization technology for long argumentative texts. We further report details of both, an in-depth corpus analysis, and the evaluation of two extractive summarization models.
DT-QDC: A Dataset for Question Comprehension in Online Test

With the transformation of education from the traditional classroom environment to online education and assessment, it is more and more important to accurately assess the difficulty of questions than ever. As teachers may not be able to follow the student’s performance and learning behavior closely, a well-defined method to measure the difficulty of questions to guide learning is necessary. In this paper, we explore the concept of question difficulty and provide our new Chinese DT-QDC dataset. This is currently the largest and only Chinese question dataset, and it also has enriched attributes and difficulty labels. Additional attributes such as keywords, chapter, and question type would allow models to understand questions more precisely. We proposed the MTMS-BERT and ORMS-BERT, which can improve the judgment of difficulty from different views. The proposed methods outperforms different baselines by 7.79% on F1-score and 15.92% on MAE, 28.26% on MSE on the new DT-QDC dataset, laying the foundation for the question difficulty comprehension task.
Automatic Assistance for Academic Word Usage

This paper describes a writing assistance system that helps students improve their academic writing. Given an input text, the system suggests lexical substitutions that aim to incorporate more academic vocabulary. The substitution candidates are drawn from an academic word list and ranked by a masked language model. Experimental results show that lexical formality analysis can improve the quality of the suggestions, in comparison to a baseline that relies on the masked language model only.
Modeling Local Contexts for Joint Dialogue Act Recognition and Sentiment Classification with Bi-channel Dynamic Convolutions

In this paper, we target improving the joint dialogue act recognition (DAR) and sentiment classification (SC) tasks by fully modeling the local contexts of utterances. First, we employ the dynamic convolution network (DCN) as the utterance encoder to capture the dialogue contexts. Further, we propose a novel context-aware dynamic convolution network (CDCN) to better leverage the local contexts when dynamically generating kernels. We extended our frameworks into bi-channel version (i.e., BDCN and BCDCN) under multi-task learning to achieve the joint DAR and SC. Two channels can learn their own feature representations for DAR and SC, respectively, but with latent interaction. Besides, we suggest enhancing the tasks by employing the DiaBERT language model. Our frameworks obtain state-of-the-art performances against all baselines on two benchmark datasets, demonstrating the importance of modeling the local contexts.
UZH at SemEval-2020 Task 3: Combining BERT with WordNet Sense Embeddings to Predict Graded Word Similarity Changes

CoSimLex is a dataset that can be used to evaluate the ability of context-dependent word embed- dings for modeling subtle, graded changes of meaning, as perceived by humans during reading. At SemEval-2020, task 3, subtask 1 is about ”predicting the (graded) effect of context in word similarity”, using CoSimLex to quantify such a change of similarity for a pair of words, from one context to another. Here, a meaning shift is composed of two aspects, a) discrete changes observed between different word senses, and b) more subtle changes of meaning representation that are not captured in those discrete changes. Therefore, this SemEval task was designed to allow the evaluation of systems that can deal with a mix of both situations of semantic shift, as they occur in the human perception of meaning. The described system was developed to improve the BERT baseline provided with the task, by reducing distortions in the BERT semantic space, compared to the human semantic space. To this end, complementarity between 768- and 1024-dimensional BERT embeddings, and average word sense vectors were used. With this system, after some fine-tuning, the baseline performance of 0.705 (uncentered Pearson correlation with human semantic shift data from 27 annotators) was enhanced by more than 6%, to 0.7645. We hope that this work can make a contribution to further our understanding of the semantic vector space of human perception, as it can be modeled with context-dependent word embeddings in natural language processing systems.
Explanation Regeneration via Multi-Hop ILP Inference over Knowledge Base

Textgraphs 2020 Workshop organized a shared task on ‘Explanation Regeneration’ that required reconstructing gold explanations for elementary science questions. This work describes our submission to the task which is based on multiple components: a BERT baseline ranking, an Integer Linear Program (ILP) based re-scoring and a regression model for re-ranking the explanation facts. Our system achieved a Mean Average Precision score of 0.3659.
Improving Grammatical Error Correction with Data Augmentation by Editing Latent Representation

The incorporation of data augmentation method in grammatical error correction task has attracted much attention. However, existing data augmentation methods mainly apply noise to tokens, which leads to the lack of diversity of generated errors. In view of this, we propose a new data augmentation method that can apply noise to the latent representation of a sentence.By editing the latent representations of grammatical sentences, we can generate synthetic samples with various error types. Combining with some pre-defined rules, our method can greatly improve the performance and robustness of existing grammatical error correction models. We evaluate our method on public benchmarks of GEC task and it achieves the state-of-the-art performance on CoNLL-2014 and FCE benchmarks.
Leveraging HTML in Free Text Web Named Entity Recognition

HTML tags are typically discarded in free text Named Entity Recognition from Web pages. We investigate whether these discarded tags might be used to improve NER performance. We compare Text+Tags sentences with their Text-Only equivalents, over five datasets, two free text segmentation granularities and two NER models. We find an increased F1 performance for Text+Tags of between 0.9% and 13.2% over all datasets, variants and models. This performance increase, over datasets of varying entity types, HTML density and construction quality, indicates our method is flexible and adaptable. These findings imply that a similar technique might be of use in other Web-aware NLP tasks, including the enrichment of deep language models.
A Learning-Exploring Method to Generate Diverse Paraphrases with Multi-Objective Deep Reinforcement Learning

Paraphrase generation (PG) is of great importance to many downstream tasks in natural language processing. Diversity is an essential nature to PG for enhancing generalization capability and robustness of downstream applications. Recently, neural sequence-to-sequence (Seq2Seq) models have shown promising results in PG. However, traditional model training for PG focuses on optimizing model prediction against single reference and employs cross-entropy loss, which objective is unable to encourage model to generate diverse paraphrases. In this work, we present a novel approach with multi-objective learning to PG. We propose a learning-exploring method to generate sentences as learning objectives from the learned data distribution, and employ reinforcement learning to combine these new learning objectives for model training. We first design a sample-based algorithm to explore diverse sentences. Then we introduce several reward functions to evaluate the sampled sentences as learning signals in terms of expressive diversity and semantic fidelity, aiming to generate diverse and high-quality paraphrases. To effectively optimize model performance satisfying different evaluating aspects, we use a GradNorm-based algorithm that automatically balances these training objectives. Experiments and analyses on Quora and Twitter datasets demonstrate that our proposed method not only gains a significant increase in diversity but also improves generation quality over several state-of-the-art baselines.
A Review of Dataset and Labeling Methods for Causality Extraction

Causality represents the most important kind of correlation between events. Extracting causali-ty from text has become a promising hot topic in NLP. However, there is no mature research systems and datasets for public evaluation. Moreover, there is a lack of unified causal sequence label methods, which constitute the key factors that hinder the progress of causality extraction research. We survey the limitations and shortcomings of existing causality research field com-prehensively from the aspects of basic concepts, extraction methods, experimental data, and la-bel methods, so as to provide reference for future research on causality extraction. We summa-rize the existing causality datasets, explore their practicability and extensibility from multiple perspectives and create a new causal dataset ESC. Aiming at the problem of causal sequence labeling, we analyse the existing methods with a summarization of its regulation and propose a new causal label method of core word. Multiple candidate causal label sequences are put for-ward according to label controversy to explore the optimal label method through experiments, and suggestions are provided for selecting label method.
A High Precision Pipeline for Financial Knowledge Graph Construction

Motivated by applications such as question answering, fact checking, and data integration, there is significant interest in constructing knowledge graphs by extracting information from unstructured information sources, particularly text documents. Knowledge graphs have emerged as a standard for structured knowledge representation, whereby entities and their inter-relations are represented and conveniently stored as (subject,predicate,object) triples in a graph that can be used to power various downstream applications. The proliferation of financial news sources reporting on companies, markets, currencies, and stocks presents an opportunity for extracting valuable knowledge about this crucial domain. In this paper, we focus on constructing a knowledge graph automatically by information extraction from a large corpus of financial news articles. For that purpose, we develop a high precision knowledge extraction pipeline tailored for the financial domain. This pipeline combines multiple information extraction techniques with a financial dictionary that we built, all working together to produce over 342,000 compact extractions from over 288,000 financial news articles, with a precision of 78% at the top-100 extractions.The extracted triples are stored in a knowledge graph making them readily available for use in downstream applications.
A Neural Local Coherence Analysis Model for Clarity Text Scoring

Local coherence relation between two phrases/sentences such as cause-effect and contrast gives a strong influence of whether a text is well-structured or not. This paper follows the assumption and presents a method for scoring text clarity by utilizing local coherence between adjacent sentences. We hypothesize that the contextual features of coherence relations learned by utilizing different data from the target training data are also possible to discriminate well-structured of the target text and thus help to score the text clarity. We propose a text clarity scoring method that utilizes local coherence analysis with an out-domain setting, i.e. the training data for the source and target tasks are different from each other. The method with language model pre-training BERT firstly trains the local coherence model as an auxiliary manner and then re-trains it together with clarity text scoring model. The experimental results by using the PeerRead benchmark dataset show the improvement compared with a single model, scoring text clarity model. Our source codes are available online.
Regrexit or not Regrexit: Aspect-based Sentiment Analysis in Polarized Contexts

Emotion analysis in polarized contexts represents a challenge for Natural Language Processing modeling. As a step in the aforementioned direction, we present a methodology to extend the task of Aspect-based Sentiment Analysis (ABSA) toward the affect and emotion representation in polarized settings. In particular, we adopt the three-dimensional model of affect based on Valence, Arousal, and Dominance (VAD). We then present a Brexit scenario that proves how affect varies toward the same aspect when politically polarized stances are presented. Our approach captures aspect-based polarization from newspapers regarding the Brexit scenario of 1.2m entities at sentence-level. We demonstrate how basic constituents of emotions can be mapped to the VAD model, along with their interactions respecting the polarized context in ABSA settings using biased key-concepts (e.g., “stop Brexit” vs. “support Brexit”). Quite intriguingly, the framework achieves to produce coherent aspect evidences of Brexit’s stance from key-concepts, showing that VAD influence the support and opposition aspects.
Organic Open-cell Porous Structure Modeling

Open-cell porous structures are ubiquitous in nature and have been widely employed in practical applications. Additive manufacturing has enabled the fabrication of shapes with intricate interior structures; however, a computational method for representing and modeling general porous structures in organic shapes is missing in the literature. In this paper, we present a novel method for modeling organic and open-cell porous structures with porosities and pore anisotropies specified by users or stipulated by applications. We represent each pore as a transformed Gaussian kernel whose anisotropy is defined by a tensor field. The porous structure is modeled as a level surface of combined Gaussian kernels. We utilize an anisotropic particle system to distribute the Gaussian kernels concerning the input tensor field. The porous structure is then generated from the particle system by following the anisotropy specified by the input. We employ Morse-Smale complexes to identify the topological structure of the kernels and enforce pore connectivity. The resulting porous structure can be easily controlled using a set of parameters. We demonstrate our method on a set of 3D models whose tensor field is either predesigned or obtained from the mechanical analysis.
Impact of Stimulus Features on the Performance of a Gaze-Independent Brain-Computer Interface Based on Covert Spatial Attention Shifts

Regaining communication abilities in patients who are unable to speak or move is one of the main goals in decoding brain waves for brain-computer interface (BCI) control. Many BCI approaches designed for communication rely on attention to visual stimuli, commonly applying an oddball paradigm, and require both eye movements and adequate visual acuity. These abilities may, however, be absent in patients who depend on BCI communication. We have therefore developed a response-based communication BCI, which is independent of gaze shifts but utilizes covert shifts of attention to the left or right visual field. We recorded the electroencephalogram (EEG) from 29 channels and coregistered the vertical and horizontal electrooculogram. Data-driven decoding of small attention-based differences between the hemispheres, also known as N2pc, was performed using 14 posterior channels, which are expected to reflect correlates of visual spatial attention. Eighteen healthy participants responded to 120 statements by covertly directing attention to one of two colored symbols (green and red crosses for “yes” and “no,” respectively), presented in the user’s left and right visual field, respectively, while maintaining central gaze fixation. On average across participants, 88.5% (std: 7.8%) of responses were correctly decoded online. In order to investigate the potential influence of stimulus features on accuracy, we presented the symbols with different visual angles, by altering symbol size and eccentricity. The offline analysis revealed that stimulus features have a minimal impact on the controllability of the BCI. Hence, we show with our novel approach that spatial attention to a colored symbol is a robust method with which to control a BCI, which has the potential to support severely paralyzed people with impaired eye movements and low visual acuity in communicating with their environment.
UniTuebingenCL at SemEval-2020 Task 7: Humor Detection in News Headlines

This paper describes the work done by the team UniTuebingenCL for the SemEval 2020 Task 7: “Assessing the Funniness of Edited News Headlines”. We participated in both sub-tasks: sub-task A, given the original and the edited headline, predicting the mean funniness of the edited headline; and sub-task B, given the original headline and two edited versions, predicting which edited version is the funnier of the two. A Ridge Regression model using Elmo and Glove embeddings as well as Truncated Singular Value Decomposition was used as the final model. A long short term memory model recurrent network (LSTM) served as another approach for assessing the funniness of a headline. For the first sub-task, we experimented with the extraction of multiple features to achieve lower Root Mean Squared Error. The lowest Root Mean Squared Error achieved was 0.575 for sub-task A, and the highest Accuracy was 0.618 for sub-task B.
Speech Disfluencies occur at Higher Perplexities

Speech disfluencies have been hypothesized to occur before words that are less predictable and therefore more cognitively demanding. In this paper, we revisit this hypothesis by using OpenAI’s GPT-2 to calculate predictability of words as language model perplexity. Using the Switchboard corpus, we find that 51% of disfluencies occur at the highest, second highest, or within one token of the highest perplexity, and this distribution is not random. We also show that disfluencies precede words with significantly higher perplexity than fluent contexts. Based on our results, we offer new evidence that disfluencies are more likely to occur before less predictable words.
Multi-level Alignment Pretraining for Multi-lingual Semantic Parsing

In this paper, we present a multi-level alignment pretraining method in a unified architecture formulti-lingual semantic parsing. In this architecture, we use an adversarial training method toalign the space of different languages and use sentence level and word level parallel corpus assupervision information to align the semantic of different languages. Finally, we jointly train themulti-level alignment and semantic parsing tasks. We conduct experiments on a publicly avail-able multi-lingual semantic parsing dataset ATIS and a newly constructed dataset. Experimentalresults show that our model outperforms state-of-the-art methods on both datasets.
TueMix at SemEval-2020 Task 9: Logistic Regression with Linguistic Feature Set

Commonly occurring in settings such as social media platforms, code-mixed content makes the task of identifying sentiment notably more challenging and complex due to the lack of structure and noise present in the data. SemEval-2020 Task 9, SentiMix, was organized with the purpose of detecting the sentiment of a given code-mixed tweet comprising Hindi and English. We tackled this task by comparing the performance of a system, TueMix - a logistic regression algorithm trained with three feature components: TF-IDF n-grams, monolingual sentiment lexicons, and surface features - with a neural network approach. Our results showed that TueMix outperformed the neural network approach and yielded a weighted F1-score of 0.685.
Parsers Know Best: German PP Attachment Revisited

In the paper, we revisit the PP attachment problem which has been identified as one of the major sources for parser errors and discuss shortcomings of recent work. In particular, we show that using gold information for the extraction of attachment candidates as well as a missing comparison of the system’s output to the output of a full syntactic parser leads to an overly optimistic assessment of the results. We address these issues by presenting a realistic evaluation of the potential of different PP attachment systems, using fully predicted information as system input. We compare our results against the output of a strong neural parser and show that the full parsing approach is superior to modeling PP attachment disambiguation as a separate task.
Improving Human-Labeled Data through Dynamic Automatic Conflict Resolution

This paper develops and implements a scalable methodology for (a) estimating the noisiness of labels produced by a typical crowdsourcing semantic annotation task, and (b) reducing the resulting error of the labeling process by as much as 20-30% in comparison to other common labeling strategies. Importantly, this new approach to the labeling process, which we name Dynamic Automatic Conflict Resolution (DACR), does not require a ground truth dataset and is instead based on inter-project annotation inconsistencies. This makes DACR not only more accurate but also available to a broad range of labeling tasks. In what follows we present results from a text classification task performed at scale for a commercial personal assistant, and evaluate the inherent ambiguity uncovered by this annotation strategy as compared to other common labeling strategies.