Miracle-dz/UniFAR-FTUs huggingface dataset:
Surface Modification of Spider Silk Particles to Direct Biomolecular Corona Formation.

In recent years, spider silk-based materials have attracted considerable attention due to their biocompatibility, processability, and biodegradability. For their potential use in biomaterial applications, i.e. as drug delivery systems and implant coatings for tissue regeneration, it is vital to understand the interactions between the silk biomaterial surface and the biological environment. Like most polymeric carrier systems, spider silk material surfaces can adsorb proteins when in contact with blood, resulting in the formation of a biomolecular corona. Here, we assessed the effect of surface net charge of materials made of recombinant spider silk on the biomolecular corona composition. In-depth proteomic analysis of the biomolecular corona revealed that positively charged spider silk materials surfaces interacted predominantly with fibrinogen-based proteins. This fibrinogen enrichment correlated with blood clotting observed for both positively charged spider silk films and particles. In contrast, negative surface charges prevented blood clotting. Genetic engineering allows the fine-tuning of surface properties of the spider silk particles providing a whole set of recombinant spider silk proteins with different charges or peptide-tags to be used for, for example, drug delivery or cell docking, and several of these were analyzed concerning the composition of their biomolecular corona. Taken together this study demonstrates how the surface net-charge of recombinant spider silk surfaces affects the composition of the biomolecular corona, which in turn affects macroscopic effects such as fibrin formation and blood clotting.
Combining genetic and demographic monitoring better informs conservation of an endangered urban snake

Conversion and fragmentation of wildlife habitat often leads to smaller and isolated populations and can reduce a species’ ability to disperse across the landscape. As a consequence, genetic drift can quickly lower genetic variation and increase vulnerability to extirpation. For species of conservation concern, quantification of population size and connectivity can clarify the influence of genetic drift in local populations and provides important information for conservation management and recovery strategies. Here, we used genome-wide single nucleotide polymorphism (SNP) data and capture-mark-recapture methods to evaluate the genetic diversity and demography within seven focal sites of the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia), a species affected by alteration and isolation of wetland habitats throughout its distribution. The primary goals were to determine the population structure and degree of genetic isolation among T. s. tetrataenia populations and estimate effective size and population abundance within sites to better understand the present and future importance of genetic drift. We also used temporally sampled datasets to examine the magnitude of genetic change over time. We found moderate population genetic structure throughout the San Francisco Peninsula that partitions sites into northern and southern regional clusters. Point estimates of both effective size and population abundance were generally small (≤ 100) for a majority of the sites, and estimates were particularly low in the northern populations. Genetic analyses of temporal datasets indicated an increase in genetic differentiation, especially for the most geographically isolated sites, and decreased genetic diversity over time in at least one site (Pacifica). Our results suggest that drift-mediated processes as a function of small population size and reduced connectivity from neighboring populations may decrease diversity and increase differentiation. Improving genetic diversity and connectivity among T. s. tetrataenia populations could promote persistence of this endangered snake.
Effect of Chemical Treatment on In Vitro and In Situ Degradation of Canola Meal Crude Protein

Abstract Effect of chemical treatment on in vitro and in situ digestion of canola meal was investigated. Canola meal was treated by spraying with HCl, acetic acid, formic acid, or propionic acid at concentrations of 2.5 and 5% (vol/wt) followed by drying at 105°C. All acid treatments decreased CP solubility of canola meal in a borate-phosphate buffer solution. In vitro NH 3 production was also decreased by acid treatment of canola meal. Chemical treatment reduced CP digestion by protease enzyme, as reflected by higher residual CP in incubation media for all incubation times. Chemical treatment increased residual CP twofold at 8h and threefold at 16 and 24h of in situ incubation. Estimated true digestibility of canola meal CP was not influenced by acetic acid, formic acid, or propionic acid treatment but was reduced by HCl treatment. Acid treatment reduced ruminal degradability of canola meal CP and, with the exception of HCl, did not depress estimated intestinal CP digestibility.
A randomized controlled trial of high-intensity interval training and inspiratory muscle training for chronic heart failure patients with inspiratory muscle weakness

Objectives Chronic heart failure is a major public health problem in which supervised exercise programs are recommended as part of non-pharmacological management. There are various reports of the success of high-intensity aerobic interval training (HI-AIT) and inspiratory muscle training (IMT) in the management of chronic heart failure patients. This study tested the hypothesis that the combination of HI-AIT and IMT could result in additional benefits over the IMT and the HI-AIT alone in terms of inspiratory muscle function, exercise capacity, and quality of life in patients with chronic heart failure and inspiratory muscle weakness. Methods Forty patients with ejection fraction ≤45% and inspiratory muscle weakness described by maximal inspiratory pressure <70% predicted, underwent three exercise training sessions per week for 12 weeks. Patients were randomly allocated to one of four groups: the HI-AIT group, the IMT group, the combined (HI-AIT & IMT) group, and the control group. Before and after completing their training period, all patients underwent different tests that are mentioned above. Results No changes were detected in the control group. However, the combined group, when compared to HI-AIT and IMT groups, respectively, resulted in additional significant improvement in maximal inspiratory training (62%, 24%, 25%), exercise time (62%, 29%, 12%), the 6-minute walk test (23%, 15%, 18%), and the Minnesota Living with Heart Failure Questionnaire (56%, 47%, 36%). Conclusion In patients with chronic heart failure and inspiratory muscle weakness, the combination of the HI-AIT and the IMT resulted in additional benefits in respiratory muscle function, exercise performance, and quality of life compared to that of HI-AIT or IMT alone. Trial Registration number: NCT03538249
A Mixed-Methods Approach to Understanding Knowledge of Mosquito-Borne Infections and Barriers for Protection in Hanoi, Vietnam

Dengue is a growing problem in Hanoi, with cyclical epidemics of increasing frequency and magnitude. In June 2019, we conducted a cross-sectional survey using mixed methods to investigate how inhabitants of Hanoi perceive and respond to the risk of mosquito-borne diseases (MBD). A total of 117 participants recruited using a stratified random sampling method were interviewed in three districts of Hanoi. Knowledge and practices (KP) regarding MBDs were assessed using a pre-tested questionnaire. Inferential statistics were used to identify factors associated with KP scores and describe the relationship between variables. Additionally, a “risk-mapping” exercise was conducted in a subsample through semi-structured interviews and analyzed qualitatively and quantitatively using the System Effects platform. Factors significantly associated with knowledge scores were education and family history of MBDs. While knowledge and practice scores were found to be positively correlated in the statistical analysis, this was not corroborated by our observations on the field. The results also revealed gaps in knowledge about MBDs and vectors and highlighted a general feeling of powerlessness which prevented the adoption of protective behaviors. Therefore, educational interventions which provide concrete tools to empower communities should have a positive impact on improving vector control.
Estimation of the total efficiency of metabolizable energy utilization for maintenance and growth by cattle in tropical conditions

Data of 320 animals were obtained from eight comparative slaughter studies performed under tropical conditions and used to estimate the total efficiency of utilization of the metabolizable energy intake (MEI), which varied from 77 to 419 kcal kg-0.75d-1. The provided data also contained direct measures of the recovered energy (RE), which allowed calculating the heat production (HE) by difference. The RE was regressed on MEI and deviations from linearity were evaluated by using the F-test. The respective estimates of the fasting heat production and the intercept and the slope that composes the relationship between RE and MEI were 73 kcal kg-0.75d-1, 42 kcal kg-0.75d-1 and 0.37. Hence, the total efficiency was estimated by dividing the net energy for maintenance and growth by the metabolizable energy intake. The estimated total efficiency of the ME utilization and analogous estimates based on the beef cattle NRC model were employed in an additional study to evaluate their predictive powers in terms of the mean square deviations for both temperate and tropical conditions. The two approaches presented similar predictive powers but the proposed one had a 22% lower mean squared deviation even with its more simplified structure.
The interaction of the mitochondrial protein importer TOMM34 with HSP70 is regulated by TOMM34 phosphorylation and binding to 14-3-3 adaptors

Translocase of outer mitochondrial membrane 34 (TOMM34) orchestrates heat shock protein 70 (HSP70)/HSP90–mediated transport of mitochondrial precursor proteins. Here, using in vitro phosphorylation and refolding assays, analytical size-exclusion chromatography, and hydrogen/deuterium exchange MS, we found that TOMM34 associates with 14-3-3 proteins after its phosphorylation by protein kinase A (PKA). PKA preferentially targeted two serine residues in TOMM34: Ser93 and Ser160, located in the tetratricopeptide repeat 1 (TPR1) domain and the interdomain linker, respectively. Both of these residues were necessary for efficient 14-3-3 protein binding. We determined that phosphorylation-induced structural changes in TOMM34 are further augmented by binding to 14-3-3, leading to destabilization of TOMM34's secondary structure. We also observed that this interaction with 14-3-3 occludes the TOMM34 interaction interface with ATP-bound HSP70 dimers, which leaves them intact and thereby eliminates an inhibitory effect of TOMM34 on HSP70-mediated refolding in vitro. In contrast, we noted that TOMM34 in complex with 14-3-3 could bind HSP90. Both TOMM34 and 14-3-3 participated in cytosolic precursor protein transport mediated by the coordinated activities of HSP70 and HSP90. Our results provide important insights into how PKA-mediated phosphorylation and 14-3-3 binding regulate the availability of TOMM34 for its interaction with HSP70.
Socio-economic impacts of working horses in urban and peri-urban areas of the Cape Flats, South Africa

In the Cape Flats townships, Cape Town, South Africa, there are more than 250 working cart horses. They serve the community with scrap metal and garden refuse removal, human transport and the selling of goods. A questionnaire was undertaken to understand the social and economic impacts of a horse and cart in the Cape Flats on individual owners and/or drivers, their households and the community. A mixture of classical quantitative questions combined with qualitative participatory technique questions were used. A total of 100 participants took part in the questionnaire, who cart with 163 horses between them. The majority (89%) identified the cart horse income as their primary income source. Apart from the participants, an additional 716 people were supported financially through this income, where the mean number of children supported was 2.9 (95% confidence interval [CI]: ±0.42) per interviewed participant. Scrap metal transportation was the most common work and the season (winter) had a negative impact on their ability to work. The spatial extent to which a cart horses work was determined and related back to the impact on the horse and participant of the survey. It was demonstrated that the cart horse industry had an impact not only on those who worked in the industry, but also on the surrounding residents, either through their work or through supporting others with their income. This study revealed that the concepts of ‘One Health’ and ‘Health in Social-Ecological Systems’, in action as horse and human health within the Cape Flats are closely intertwined.
Balancing selection in Pattern Recognition Receptor signalling pathways is associated with gene function and pleiotropy in a wild rodent

Pathogen‐mediated balancing selection is commonly considered to play an important role in the maintenance of genetic diversity, in particular in immune genes. However, the factors that may influence which immune genes are the targets of such selection are largely unknown. To address this, here we focus on Pattern Recognition Receptor (PRR) signalling pathways, which play a key role in innate immunity. We used whole‐genome resequencing data from a population of bank voles (Myodes glareolus) to test for associations between balancing selection, pleiotropy and gene function in a set of 123 PRR signalling pathway genes. To investigate the effect of gene function, we compared genes encoding (a) receptors for microbial ligands versus downstream signalling proteins, and (b) receptors recognizing components of microbial cell walls, flagella and capsids versus receptors recognizing features of microbial nucleic acids. Analyses based on the nucleotide diversity of full coding sequences showed that balancing selection primarily targeted receptor genes with a low degree of pleiotropy. Moreover, genes encoding receptors recognizing components of microbial cell walls etc. were more important targets of balancing selection than receptors recognizing nucleic acids. Tests for localized signatures of balancing selection in coding and noncoding sequences showed that such signatures were mostly located in introns, and more evenly distributed among different functional categories of PRR pathway genes. The finding that signatures of balancing selection in full coding sequences primarily occur in receptor genes, in particular those encoding receptors for components of microbial cell walls etc., is consistent with the idea that coevolution between hosts and pathogens is an important cause of balancing selection on immune genes.
Determination of Cereal Alpha Amylase Using a Commercially Available Dye‐labelled Substrate

A new analytical method for the determination of α-amylase in cereals and cereal products has been developed. The new method is based on the colorimetric measurement of the products released from a commercially available cross linked dye-labelled starch substrate. This substrate is resistant to β-amylase, but readily attacked by α-amylase. The new method is quantitative, and measures cereal α-amylase in milli International Enzyme Units. Also, the method is simple, rapid, and gives excellent correlations with viscometric and iodine achromatic point methods.
Branched chain amino acids exacerbate myocardial ischemia/reperfusion vulnerability via enhancing GCN2/ATF6/PPAR-α pathway-dependent fatty acid oxidation

Rationale: Myocardial vulnerability to ischemia/reperfusion (I/R) injury is strictly regulated by energy substrate metabolism. Branched chain amino acids (BCAA), consisting of valine, leucine and isoleucine, are a group of essential amino acids that are highly oxidized in the heart. Elevated levels of BCAA have been implicated in the development of cardiovascular diseases; however, the role of BCAA in I/R process is not fully understood. The present study aims to determine how BCAA influence myocardial energy substrate metabolism and to further clarify the pathophysiological significance during cardiac I/R injury. Methods: Parameters of glucose and fatty acid metabolism were measured by seahorse metabolic flux analyzer in adult mouse cardiac myocytes with or without BCAA incubation. Chronic accumulation of BCAA was induced in mice receiving oral BCAA administration. A genetic mouse model with defective BCAA catabolism was also utilized. Mice were subjected to MI/R and the injury was assessed extensively at the whole-heart, cardiomyocyte, and molecular levels. Results: We confirmed that chronic accumulation of BCAA enhanced glycolysis and fatty acid oxidation (FAO) but suppressed glucose oxidation in adult mouse ventricular cardiomyocytes. Oral gavage of BCAA enhanced FAO in cardiac tissues, exacerbated lipid peroxidation toxicity and worsened myocardial vulnerability to I/R injury. Etomoxir, a specific inhibitor of FAO, rescued the deleterious effects of BCAA on I/R injury. Mechanistically, valine, leucine and their corresponding branched chain α-keto acid (BCKA) derivatives, but not isoleucine and its BCKA derivative, transcriptionally upregulated peroxisome proliferation-activated receptor alpha (PPAR-α). BCAA/BCKA induced PPAR-α upregulation through the general control nonderepresible-2 (GCN2)/ activating transcription factor-6 (ATF6) pathway. Finally, in a genetic mouse model with BCAA catabolic defects, chronic accumulation of BCAA increased FAO in myocardial tissues and sensitized the heart to I/R injury, which could be reversed by adenovirus-mediated PPAR-α silencing. Conclusions: We identify BCAA as an important nutrition regulator of myocardial fatty acid metabolism through transcriptional upregulation of PPAR-α. Chronic accumulation of BCAA, caused by either dietary or genetic factors, renders the heart vulnerable to I/R injury via exacerbating lipid peroxidation toxicity. These data support the notion that BCAA lowering methods might be potentially effective cardioprotective strategies, especially among patients with diseases characterized by elevated levels of BCAA, such as obesity and diabetes.
Physical Activity, Mental and Personal Well-Being, Social Isolation, and Perceptions of Academic Attainment and Employability in University Students: The Scottish and British Active Students Surveys.

BACKGROUND Physical activity (PA) promotes health and well-being. For students, university represents a transitional period, including increased independence over lifestyle behaviors, in addition to new stressors and barriers to engaging in PA. It is, therefore, important to monitor PA trends in students to gain a greater understanding about the role it might play in physical and mental well-being, as well as other factors, such as attainment and employability. METHODS Cross-sectional surveys were conducted in 2016 in Scottish universities and colleges, and in 2017 in universities and colleges across the United Kingdom, and the data were pooled for the present study (N = 11,650). Cumulative ordinal logistic regression was used to model the association between PA levels and mental and personal well-being, social isolation, and perceptions of academic attainment and employability. RESULTS Only 51% of the respondents met the recommended levels of moderate to vigorous PA per week. There was a linear relationship between PA levels and all outcomes, with better scores in more active students. CONCLUSIONS UK university students are insufficiently active compared with the general population of 16- to 24-year olds. Yet, students with higher PA report better outcomes for mental and personal well-being, social isolation, and perceptions of academic attainment and employability.
Effects of Some Charged Amino Acid Mutations on the Electron Self-Exchange Kinetics of Cytochrome b5

Two mutants of trypsin-solubilized bovine liver cytochrome b5 (cyt b5) have been prepared to elucidate the function of charged residues near the heme exposed edge in the electron self-exchange kinetics of cyt b5. The Glu44, Glu56, and Asp60 were mutated into alanines in mutant I (E44A/E56A/D60A) while Glu44, Glu48, Glu56, and Asp60 were mutated into alanines in mutant II (E44A/E48A/E56A/D60A). The electron self-exchange rates of cyt b5 mutants I and II have been measured as a function of temperature and ionic strength using the one-dimensional 1H NMR saturation transfer method. Under the condition of μ = 0.10 M and [cyt b5] = 0.50 mM, the rate constant of the cyt b5 mutant I is (4.0 ± 0.4) × 103 M-1 s-1 at 20 °C. The value rises to (7.2 ± 0.7) × 103 M-1 s-1 at 35 °C; data from 20 to 35 °C gave ΔH⧧ = 6.8 ± 0.8 kcal mol-1 and ΔS⧧ = −19 ± 3 eu. The rate constant for cyt b5 mutant II is (8.4 ± 0.7) × 103 M-1 s-1 at 20 °C with μ = 0.10 M and [cyt b5] = 0.60 mM. The value rises to (17 ± 1) × 103 M-1 s-1 at 35 °.
The effects of Pb on sperm parameters and sperm DNA fragmentation of men investigated for infertility

Abstract Background Lead (Pb) is one of the metals most prevalent in the environment and is known to cause infertility and deoxyribonucleic acid (DNA) fragmentation. This study aimed to determine the association between seminal plasma Pb and sperm DNA fragmentation in men investigated for infertility. Methods Male partners (n = 300) of couples investigated for infertility were recruited after informed consent was obtained. Sperm parameters were assessed according to the World Health Organization (WHO) guidelines. Seminal plasma Pb was estimated by atomic absorption spectrophotometry after digestion with nitric acid. Results In Pb-positive and -negative groups the sperm parameters and sperm DNA fragmentation were compared using independent sample t-test and the Mann-Whitney U-test, respectively. The mean [standard deviation (SD)] age and duration of infertility were 34.8 (5.34) years and 45.7 (35.09) months, respectively, and the mean Pb concentration was 15.7 μg/dL. In Pb positives compared to Pb negatives the means (SD) of sperm count, progressive motility viability and normal morphology were lower (p > 0.05) but the DNA fragmentation was significantly higher 39.80% (25.08) than Pb negatives 22.65% (11.30). Seminal plasma Pb concentration and sperm DNA fragmentation had a positive correlation (r = 0.38, p = 0.03). A negative correlation was observed between sperm DNA fragmentation and sperm concentration, progressive motility, total motility and viability. When the DNA fragmentation was ≥30% sperm concentration and viability decreased (p < 0.05). Conclusions Pb in seminal plasma had a significant effect on sperm DNA fragmentation but not with other sperm parameters.