Miracle-dz/UniFAR-FTUs huggingface dataset:
Association between Oral Health Status and Diabetic Nephropathy-Related Indices in Japanese Middle-Aged Men

Oral health status is known to be associated with lifestyle-related diseases such as diabetes and chronic kidney disease. In Japan, around 40% of hemodialysis cases are patients with diabetic nephropathy. The aim of this study was to clarify the association between oral health status and diabetic nephropathy-related indices in Japanese middle-aged men. Sixty-six men (age range: 55–64 years) with ≥20 remaining teeth and who received public medical checkups and oral examinations were enrolled. We examined correlations of age, body mass index, HbA1c, HDL-C, LDL-C, neutral fat, serum creatinine, and the estimated glomerular filtration rate (eGFR) with the number of remaining teeth or the community periodontal index (CPI) score (periodontal pocket < 4 mm: 0, 4–6 mm: 1, ≥6 mm: 2). A positive correlation between the CPI score and serum creatinine and a negative correlation between CPI score and eGFR (Spearman's rank correlation coefficient, r = 0.459, p < 0.01, and r = −0.460, p < 0.01, respectively) were observed. The mean eGFR in the CPI score 0 group was significantly higher than that in the CPI score 1/2 group (82.6 vs. 70.7, Student's t-test, p < 0.01). Logistic regression analysis using eGFR as a dependent variable and age, CPI score, body mass index, HbA1c, and neutral fat as independent variables suggested that low eGFR (<60) could be attributed to CPI score (OR = 3.169, 95% CI: 1.031–9.742, p = 0.044). These results suggest a possible association between periodontal status and renal function in Japanese middle-aged men. Periodontal condition is controlled by oral prophylaxis, and periodontal disease and chronic kidney disease have some common risk factors. Thus, periodontal management can contribute to the prevention of severe chronic kidney disease.
Deploying authentication in the wild: towards greater ecological validity in security usability studies

Pico is a token-based login method that claims to be simultaneously more usable and more secure than passwords. It does not ask users to remember any secrets, nor to type one-time passwords. We evaluate Pico’s claim with two deployments and user studies, one on a web-based service and another within an organization. Our main aim is to collect actionable intelligence on how to improve the usability and deployability of Pico. In our first study we team up with an established website, Gyazo, to offer this alternative login mechanism to users intent on performing a real task of image sharing. From the lessons of this first study, we retarget Pico’s focus from replacing web passwords to replacing desktop login passwords; and thus in our second study we engage with a government organization, Innovate UK, to offer employees the ability to lock and unlock their computer automatically based on proximity. We focus particularly on the ecological validity of the trials and we thereby gain valuable insights into the viability of Pico, not only through the actual responses from the participants but also through the many practical challenges we had to face and overcome. Reflecting on the bigger picture, from our experience we believe the security usability community would greatly benefit from pushing towards greater ecological validity in published work, despite the considerable difficulties and costs involved.
Diagnostic Images of the Ocular Fundus Using a Low-Cost Portable Endoscope in Premature Patients at Risk of Developing Retinopathy of Prematurity

The purpose of this article is to describe how fundus images are obtained using a low-cost device: the “Visual Ear Wax Cleaner Tool” portable endoscope (Soonhua Inc., China) connected to a smartphone, after installation of free applications (“Inskam” and “CameraFI”) using the smartphone screen as a monitor and after medication mydriasis, local anesthesia, and blepharostat placement. With this endoscope, video recording and fundus imaging are easily performed, for the case of patients at the risk of developing retinopathy of prematurity (ROP), facilitating timely screening in order to start treatment in patients who require it. This fundus imaging technique shares certain similarities with the RetCam® (Clarity, Pleasaton California) system, which performs real-time fundus imaging providing the ability to record and document findings and capture images from the video footage, with high quality and definition, although with a smaller angle of vision. The capture of images using a smartphone allows storing and sharing the images. These are devices which are generally accessible and portable and which use simplified energy sources, requiring very simple training. The low-cost, easy-to-learn technique and quick sharing of images through communication networks make this a tool to be considered for the practice of telemedicine.
Assessing hydroaeroponic culture for the tripartite symbiosis of mungbean (Vigna radiata L.) with arbuscular mycorrhizal fungi and rhizobia

Mungbean ( Vigna radiata L.) has the potential to establish symbiosis with rhizobia that fix atmospheric dinitrogen (N 2 ), and arbuscular mycorrhizal fungi (AMF) that improve the uptake of low mobile soil nutrients such as phosphorus. Both rhizobial and mycorrhizal symbioses can benefit plants synergistically. The tripartite symbiosis of mungbean with rhizobia and AMF was assessed in hydroaeroponic culture under sufficient versus deficient P supplies (250 versus 75 μmol P plant- 1 week -1 ) by comparing the effects of three AMF species on the mycorrhizal root colonization, rhizobial nodulation, and plant growth. Although, Glomus intraradices colonized well the roots of mungbean in sand and hydroaeroponic cultures, Gigaspora rosea only established well under sand culture conditions, and Acaulospora mellea weakly colonized roots under both culture conditions. Though significant differences of mungbean growth were found with different AMF species in sand, only few differences were observed in hydroaeroponic cultures. It is argued that the later will probably be a valuable tool for scrutinizing the interactions among the three symbionts, as well as plant physiology, and nutrient partitioning within the symbiotic system. Key words : Acaulospora mellea, arbuscular mycorrhizal, Bradyrhizobium, Gigaspora rosea, Glomus intraradices, mungbean, phosphorus, symbiotic nitrogen fixation.
A simple double-layered chrome azurol S agar (SD- CASA) plate assay to optimize the production of siderophores by a potential biocontrol agent Bacillus

Siderophores, a high-affinity chelating agents for ferric iron, is one of the mechanisms by which biocontrol agents’ act in inhibiting the growth of phytopathogens. Bacillus subtilis QM3, a siderophore producer, is a potential biocontrol agent. In this study, a simple double-layered chrome azurol S agar (SD-CASA) plate assay was developed. We further studied optimal conditions for detection siderophore production by B. subtilis QM3 using various history cultures, pH value, amino acid, and different carbon-nitrogen ratio as four variables. After incubating different history cultures we found out that the LB medium presented strong significant CAS reaction even for 12 h, and with the help of changing variables on SD-CASA plate assisting paper-disc diffusion, strain QM3 from LB medium with Fe 3+ (10 μmol/L) showed difference interestingly. In addition, CAS reaction and growth reaction also increased with pH 7.0, tryptophan 10 μmol/L and carbon-nitrogen ratio 5:1. The findings on solid medium were similar as that in liquid medium. The SD-CASA assay should be a useful tool for screening potential biocontrol microorganisms by siderophore production.
GASTROPOD PHYLOGENETICS: PROGRESS, PROBLEMS, AND IMPLICATIONS

Abstract Twentieth century fossil gastropod systematics relied extensively on neontological paradigms. However, recent appreciation of the extant gastropod diversity suggests that those early paradigms provided very unsound models. This likely is a greater problem for Paleozoic taxa than for Meso-Cenozoic gastropods because Meso-Cenozoic taxa frequently have easily recognized extant relatives whereas Paleozoic taxa frequently do not. Also, many of the taxa that apparently diverged in the Paleozoic now are limpets and retain little information about the morphologies of their coiled ancestors. Snails could be a model taxon for investigating macroevolutionary patterns because of the clade's dense fossil record. However, paleontologists usually study only adult shells (teleoconchs), and many malacologists maintain that teleoconch characters reflect phylogeny poorly if at all. This is important because many macroevolutionary hypotheses make their most specific predictions given phylogeny. Studies evaluating species- or genus-level relationships typically use more shell characters and states than do studies evaluating suprageneric relationships, as expected if shells evolve rapidly. Monte Carlo tests reject a null hypothesis that rates of homoplasy are equal among shell and soft-anatomy characters for two neogastropod clades, but suggest that these rates differ by less than an order of magnitude. Finally, teleoconch characters fail to unite bellerophontiform species with gastropod muscle scars but successfully unites clusters bellerophontiform species with tergomyan muscle scars. These results corroborate the conventional wisdom that teleoconch character distributions reflect abundant homoplasy, but the results also suggest that these distributions reflect phylogeny, too. If we can control the effects of homoplasy, then gastropods are an excellent “model” group for testing macroevolutionary hypotheses such as changing rates of evolution. Two obvious candidates are rates of morphologic evolution among basal neogastropods, and rates of molecular evolution within clades radiating after the K/T mass extinction.
AN ENHANCED GENETIC ALGORITHM FOR THE SINGLE MACHINE TOTAL WEIGHTED TARDINESS PROBLEM

A BSTRACT . In this research paper, we aim to present a hybrid algorithm to solve the single machine total weighted tardiness scheduling problem (SMTWT) which has been proven in the literature as a NP-hard. The developed method called (WMDD-GASA) is based on the weighted modified due date (WMDD) dispatching rule, the genetic algorithm (GA) and the simulated annealing (SA) procedure. In our approach, GA is used to discover the search space globally and it is guided by the WMDD rule to improve the first population chromosome and SA is exploited in mutation step to enhance childs quality. Experimental results using a set of benchmark instances coming from OR-Library for different sizes showed its effectiveness. Mathematics
Applying Least Absolute Shrinkage and Selection Operator For Error Control

In the recent past, the development of statistical methods for high-dimensional problems has greatly advanced leading to methods for model selection such as the lasso. However, the question of error control in high-dimensional settings has proven to be difficult. Recently, an approach called stability selection has been proposed to tackle the problem. It combines a method for model selection and sub sampling to deliver a form of error control. In this paper, some variants of stability selection are introduced. It was tested if error control would actually hold up. Furthermore, some conditions were isolated where using these variants might have beneficial effects.
Reduction in Serum High-Sensitivity C-Reactive Protein Favors Kidney Outcomes in Patients with Impaired Fasting Glucose or Diabetes

Objective We aimed to evaluate whether the reduction in serum high-sensitivity C-reactive protein (hs-CRP) favors kidney outcomes. Methods This study was a subanalysis including patients with impaired fasting glucose or diabetes of the Kailuan cohort study. The predictor was based on two consecutive visits of hs-CRP levels in 2006 and 2008. A total of 3924 patients with hs-CRP ≥ 3 mg/L in 2006 were divided into two groups according to whether the levels of hs-CRP were reduced in 2008: Group 1: no reduction: hs-CRP ≥ 3 mg/L in 2008; Group 2: reduction: hs-CRP < 3 mg/L in 2008. Kidney outcomes include kidney function decline and development and progression of proteinuria and were followed up until the end of 2015. Results There were 3905, 2049, and 493 patients included into our analysis for the outcomes of kidney function decline and the development and progression of proteinuria, respectively. A total of 398, 297, and 47 events occurred after 5 years of follow-up, respectively. Cox regression revealed that patients with reduction in hs-CRP have lower risk of kidney function decline (HR 0.71, 95% CI 0.57-0.89, and P = 0.002) and development of proteinuria (0.77, 0.61-0.99, and P = 0.038) after controlling for potential confounders as compared to those with no reduction in hs-CRP levels. Conclusions Reduction in serum hs-CRP levels favors kidney outcomes in patients with impaired fasting glucose or diabetes.
Autobiographical Memory Content and Recollection Frequency: Public Release of Quantitative Datasets and Representative Classification Analysis

Autobiographical memory (AM), the recollection of personally-experienced events, has several adaptive functions and has been studied across numerous dimensions. We previously introduced two methods to quantify across the life span AM content (the amount and types of retrieved details) and the everyday occurrence of its recollection. The CRAM (cue-recalled autobiographical memory) test used naturalistic word prompts to elicit AMs. Subjects dated the memories to life periods and reported the numbers of details recalled across eight features (e.g., spatial detail, temporal detail, people, and emotions). In separate subjects, an experience sampling method quantified in everyday settings the frequency of AM retrieval and of mental representation of future personal events or actions (termed prospective memory: PM); these data permit evaluation of the temporal orientation of episodic recollection. We describe these datasets now publicly released in open access (CRAM: doi.org/10.6084/m9.figshare.10246958; AM-PM experience-sampling: doi.org/10.6084/m9.figshare.10246940). We also present examples of data mining, using cluster analyses of CRAM (14,242 AMs scored for content from 4,244 subjects). Analysis of raw feature scores yielded three AM clusters separated by total recalled content. Normalizing for total content revealed three classes of AM based on the relative contributions of each feature: AMs containing a relatively large number of details related to people, AMs containing a high degree of spatial information, and AMs with details equally distributed across features. Differences in subject age, memory age, and total content were detected across feature clusters. These findings highlight the value in additional mining of these datasets to further our understanding of autobiographical recollection.
Triple negative breast cancer: special histological types and emerging therapeutic methods

Triple negative breast cancer (TNBC) is a complex and malignant breast cancer subtype that lacks expression of the estrogen receptor (ER), progesterone receptor (PR) and human epidermal growth factor receptor 2 (HER2), thereby making therapeutic targeting difficult. TNBC is generally considered to have high malignancy and poor prognosis. However, patients diagnosed with certain rare histomorphologic subtypes of TNBC have better prognosis than those diagnosed with typical triple negative breast cancer. In addition, with the discovery and development of novel treatment targets such as the androgen receptor (AR), PI3K/AKT/mTOR and AMPK signaling pathways, as well as emerging immunotherapies, the therapeutic options for TNBC are increasing. In this paper, we review the literature on various histological types of TNBC and focus on newly developed therapeutic strategies that target and potentially affect molecular pathways or emerging oncogenes, thus providing a basis for future tailored therapies focused on the mutational aspects of TNBC.
Developing and Validating Metamodels of a Microsimulation Model of Infant HIV Testing and Screening Strategies Used in a Decision Support Tool for Health Policy Makers

Background. Metamodels can simplify complex health policy models and yield instantaneous results to inform policy decisions. We investigated the predictive validity of linear regression metamodels used to support a real-time decision-making tool that compares infant HIV testing/screening strategies. Methods. We developed linear regression metamodels of the Cost-Effectiveness of Preventing AIDS Complications Pediatric (CEPAC-P) microsimulation model used to predict life expectancy and lifetime HIV-related costs/person of two infant HIV testing/screening programs in South Africa. Metamodel performance was assessed with cross-validation and Bland-Altman plots, showing between-method differences in predicted outcomes against their means. Predictive validity was determined by the percentage of simulations in which the metamodels accurately predicted the strategy with the greatest net health benefit (NHB) as projected by the CEPAC-P model. We introduced a zone of indifference and investigated the width needed to produce between-method agreement in 95% of the simulations. We also calculated NHB losses from “wrong” decisions by the metamodel. Results. In cross-validation, linear regression metamodels accurately approximated CEPAC-P-projected outcomes. For life expectancy, Bland-Altman plots showed good agreement between CEPAC-P and the metamodel (within 1.1 life-months difference). For costs, 95% of between-method differences were within $65/person. The metamodels predicted the same optimal strategy as the CEPAC-P model in 87.7% of simulations, increasing to 95% with a zone of indifference of 0.24 life-months ( ∼ 7 days). The losses in health benefits due to “wrong” choices by the metamodel were modest (range: 0.0002–1.1 life-months). Conclusions. For this policy question, linear regression metamodels offered sufficient predictive validity for the optimal testing strategy as compared with the CEPAC-P model. Metamodels can simulate different scenarios in real time, based on sets of input parameters that can be depicted in a widely accessible decision-support tool.
Performance Evaluation of Hybrid Diversity Technique Using Minimum Shift Keying Over Rayleigh Fading Channel

The most effective method for minimizing the fading is designed and analyzed by deriving the exact expression for symbol error probability of Hybrid Selection-Maximal Ratio Combining (HS-MRC) is carried out. Independent Rayleigh fading diversity branch is assumed for analysis with equal Signal-to-Noise Ratio averaged over the fading channels. and Minimum shift keying (MSK) is considered. Virtual branch technique is used. It transforms the ordered physical branches which are dependent into independent, and identically distributed virtual branches is used, thereby permitting the derivation of exact SEP expressions.
Community Structure of Wetland Birds During Spring Migration Through the Rainwater Basin

Abstract Staging areas and migratory stopovers of wetland birds have the potential to function as geographic bottlenecks; entire populations within a flyway may be affected by the quality and quantity of available wetland habitat at stopover sites. Although approximately 90% of playa wetlands in the Rainwater Basin (RWB) region of south-central Nebraska, USA, have been destroyed, the area still provides essential stopover habitat for >10 million waterfowl each spring. We evaluated community patterns and species associations to assess importance of assembly rules in structuring wetland bird communities during migration and to better facilitate multispecies conservation and management strategies. We surveyed 36–40 playas twice weekly in the RWB and observed approximately 2.6 million individual migratory wetland birds representing 72 species during 3 spring migrations 2002–2004. We evaluated spatial and temporal species co-occurrence patterns of geese, dabbling ducks, diving ducks, and shorebirds using null model analysis. Goose species co-occurrence scores did not differ from random in any year of the study, suggesting that goose species frequently use the same habitats during migration. Co-occurrence patterns among dabbling ducks were not different than expected by chance in any year; however, when we evaluated co-occurrence at a weekly scale, dabbling ducks co-occurred less often than expected during weeks of peak migration (high abundance), indicating that dabbling duck species spatially segregated at high densities. Diving duck co-occurrence patterns did not differ from random in any year, suggesting that diving duck species used the same habitats during migration. Shorebird species co-occurred less often than expected in 2002 and 2004, and during weeks of high shorebird abundance, indicating that shorebird communities were distinctly structured during those times. Most association values among lesser snow geese (Chen caerulescens) and dabbling duck species were positive, indicating dabbling ducks did not avoid wetlands with snow geese, a concern for waterfowl managers. However, we frequently observed snow geese and dabbling ducks using different microhabitats within a wetland, which indicate species associations and co-occurrence patterns may have occurred at a finer spatial scale than we measured. This approach of co-occurrence analysis will allow wildlife managers charged with multispecies management at migration stopover sites to make informed conservation and management decisions based on community structure rather than historic single-species approaches.
(–)-Epicatechin Modulates Mitochondrial Redox in Vascular Cell Models of Oxidative Stress

Diabetes mellitus affects 451 million people worldwide, and people with diabetes are 3-5 times more likely to develop cardiovascular disease. In vascular tissue, mitochondrial function is important for vasoreactivity. Diabetes-mediated generation of excess reactive oxygen species (ROS) may contribute to vascular dysfunction via damage to mitochondria and regulation of endothelial nitric oxide synthase (eNOS). We have identified (–)-epicatechin (EPICAT), a plant compound and known vasodilator, as a potential therapy. We hypothesized that mitochondrial ROS in cells treated with antimycin A (AA, a compound targeting mitochondrial complex III) or high glucose (HG, global perturbation) could be normalized by EPICAT, and correlate with improved mitochondrial dynamics and cellular signaling. Human umbilical vein endothelial cells (HUVEC) were treated with HG, AA, and/or 0.1 or 1.0 μM of EPICAT. Mitochondrial and cellular superoxide, mitochondrial respiration, and cellular signaling upstream of mitochondrial function were assessed. EPICAT at 1.0 μM significantly attenuated mitochondrial superoxide in HG-treated cells. At 0.1 μM, EPICAT nonsignificantly increased mitochondrial respiration, agreeing with previous reports. EPICAT significantly increased complex I expression in AA-treated cells, and 1.0 μM EPICAT significantly decreased mitochondrial complex V expression in HG-treated cells. No significant effects were seen on either AMPK or eNOS expression. Our study suggests that EPICAT is useful in mitigating moderate ROS concentrations from a global perturbation and may modulate mitochondrial complex activity. Our data illustrate that EPICAT acts in the cell in a dose-dependent manner, demonstrating hormesis.