Miracle-dz/UniFAR-FTUs huggingface dataset:
Inhibition of EZH2 (Enhancer of Zeste Homolog 2) Attenuates Neuroinflammation via H3k27me3/SOCS3/TRAF6/NF-κB (Trimethylation of Histone 3 Lysine 27/Suppressor of Cytokine Signaling 3/Tumor Necrosis Factor Receptor Family 6/Nuclear Factor-κB) in a Rat Model of Subarachnoid Hemorrhage

Supplemental Digital Content is available in the text. Background and Purpose: Neuroinflammation has been proven to play an important role in the pathogenesis of early brain injury after subarachnoid hemorrhage (SAH). EZH2 (enhancer of zeste homolog 2)-mediated H3K27Me3 (trimethylation of histone 3 lysine 27) has been recognized to play a critical role in multiple inflammatory diseases. However, there is still a lack of evidence to address the effect of EZH2 on the immune response of SAH. Therefore, the aim of this study was to determine the role of EZH2 in SAH-induced neuroinflammation and explore the effect of EZH2 inhibition with its specific inhibitor EPZ6438. Methods: The endovascular perforation method was performed on rats to induce subarachnoid hemorrhage. EPZ6438, a specific EZH2 inhibitor, was administered intraperitoneally at 1 hour after SAH. SOCS3 (Suppressor of cytokine signaling 3) siRNA and H3K27me3 CRISPR were administered intracerebroventricularly at 48 hours before SAH to explore potential mechanisms. The SAH grade, short-term and long-term neurobehavioral tests, immunofluorescence staining, and western blots were performed after SAH. Results: The expression of EZH2 and H3K27me3 peaked at 24 hours after SAH. In addition, inhibition of EZH2 with EPZ6438 significantly improved neurological deficits both in short-term and long-term outcome studies. Moreover, EPZ6438 treatment significantly decreased the levels of EZH2, H3K27Me3, pathway-related proteins TRAF6 (TNF [tumor necrosis factor] receptor family 6), NF-κB (nuclear factor-κB) p65, proinflammatory cytokines TNF-α, IL (interleukin)-6, IL-1β, but increased the expression levels of SOCS3 and anti-inflammatory cytokine IL-10. Furthermore, administration of SOCS3 siRNA and H3k27me3-activating CRISPR partly abolished the neuroprotective effect of EPZ6438, which indicated that the neuroprotective effect of EPZ6438 acted, at least partly, through activation of SOCS3. Conclusions: In summary, the inhibition of EZH2 by EPZ6438 attenuated neuroinflammation via H3K27me3/SOCS3/TRAF6/NF-κB signaling pathway after SAH in rats. By targeting EZH2, this study may provide an innovative method to ameliorate early brain injury after SAH.
Diversity of the Genomes and Neurotoxins of Strains of Clostridium botulinum Group I and Clostridium sporogenes Associated with Foodborne, Infant and Wound Botulism

Clostridium botulinum Group I and Clostridium sporogenes are closely related bacteria responsible for foodborne, infant and wound botulism. A comparative genomic study with 556 highly diverse strains of C. botulinum Group I and C. sporogenes (including 417 newly sequenced strains) has been carried out to characterise the genetic diversity and spread of these bacteria and their neurotoxin genes. Core genome single-nucleotide polymorphism (SNP) analysis revealed two major lineages; C. botulinum Group I (most strains possessed botulinum neurotoxin gene(s) of types A, B and/or F) and C. sporogenes (some strains possessed a type B botulinum neurotoxin gene). Both lineages contained strains responsible for foodborne, infant and wound botulism. A new C. sporogenes cluster was identified that included five strains with a gene encoding botulinum neurotoxin sub-type B1. There was significant evidence of horizontal transfer of botulinum neurotoxin genes between distantly related bacteria. Population structure/diversity have been characterised, and novel associations discovered between whole genome lineage, botulinum neurotoxin sub-type variant, epidemiological links to foodborne, infant and wound botulism, and geographic origin. The impact of genomic and physiological variability on the botulism risk has been assessed. The genome sequences are a valuable resource for future research (e.g., pathogen biology, evolution of C. botulinum and its neurotoxin genes, improved pathogen detection and discrimination), and support enhanced risk assessments and the prevention of botulism.
Research progress and challenges to coronavirus vaccine development

Coronaviruses (CoVs) are nonsegmented, single‐stranded, positive‐sense RNA viruses highly pathogenic to humans. Some CoVs are known to cause respiratory and intestinal diseases, posing a threat to the global public health. Against this backdrop, it is of critical importance to develop safe and effective vaccines against these CoVs. This review discusses human vaccine candidates in any stage of development and explores the viral characteristics, molecular epidemiology, and immunology associated with CoV vaccine development. At present, there are many obstacles and challenges to vaccine research and development, including the lack of knowledge about virus transmission, pathogenesis, and immune response, absence of the most appropriate animal models.
An institutional experience: A retrospective analysis of the effect of transitioning from follicular lesion of undetermined significance to atypia of undetermined significance with subclassified atypia on interobserver concordance, rates of neoplasia, and rates of malignancy

The rate of malignancy (ROM) in thyroid fine needle aspirations (FNA) classified under “atypia of undetermined significance (AUS)/follicular lesion of undetermined significance (FLUS), including Hürthle cell type (HLUS)” category of The Bethesda system for reporting thyroid cytopathology (TBSRTC) in literature is highly variable. The 2018 TBSRTC was updated to note a preferred categorization of AUS cases into subcategories. This study evaluates the impact of AUS subclassification on rates of neoplasia (RON), rates of malignancy (ROM), and cytopathologist (CP) concordance.
Development of Feline Ileum- and Colon-Derived Organoids and Their Potential Use to Support Feline Coronavirus Infection

Feline coronaviruses (FCoVs) infect both wild and domestic cat populations world-wide. FCoVs present as two main biotypes: the mild feline enteric coronavirus (FECV) and the fatal feline infectious peritonitis virus (FIPV). FIPV develops through mutations from FECV during a persistence infection. So far, the molecular mechanism of FECV-persistence and contributing factors for FIPV development may not be studied, since field FECV isolates do not grow in available cell culture models. In this work, we aimed at establishing feline ileum and colon organoids that allow the propagation of field FECVs. We have determined the best methods to isolate, culture and passage feline ileum and colon organoids. Importantly, we have demonstrated using GFP-expressing recombinant field FECV that colon organoids are able to support infection of FECV, which were unable to infect traditional feline cell culture models. These organoids in combination with recombinant FECVs can now open the door to unravel the molecular mechanisms by which FECV can persist in the gut for a longer period of time and how transition to FIPV is achieved.
Super‐Resolution Spatial Proximity Detection with Proximity‐PAINT

Abstract Visualizing the functional interactions of biomolecules such as proteins and nucleic acids is key to understanding cellular life on the molecular scale. Spatial proximity is often used as a proxy for the direct interaction of biomolecules. However, current techniques to visualize spatial proximity are either limited by spatial resolution, dynamic range, or lack of single‐molecule sensitivity. Here, we introduce Proximity‐PAINT (pPAINT), a variation of the super‐resolution microscopy technique DNA‐PAINT. pPAINT uses a split‐docking‐site configuration to detect spatial proximity with high sensitivity, low false‐positive rates, and tunable detection distances. We benchmark and optimize pPAINT using designer DNA nanostructures and demonstrate its cellular applicability by visualizing the spatial proximity of alpha‐ and beta‐tubulin in microtubules using super‐resolution detection.
Divergence of Desiccation-Related Traits in Sitobion avenae from Northwestern China

Simple Summary Increasing frequency and intensity of drought has been causing increasing vulnerability for many ecosystems around the globe; thus, it is critical to understand how insects evolve in changing environments. We collected and genotyped samples of the wheat aphid Sitobion avenae from arid areas of northwestern China, and then examined their desiccation-related traits. We found both desiccation-resistant and -nonresistant genotypes, providing clear evidence of genetic divergence in desiccation resistance of this aphid. Wingless individuals tended to have higher desiccation resistance than winged ones. Extensive analyses of desiccation-related traits showed that modulation of water loss rates could be the primary mechanism underlying aphids’ resistance against desiccation stress. The content of cuticular hydrocarbons (especially methyl-branched alkanes) and their high plasticity could be closely linked to water loss rates in aphids, thereby modulating their desiccation resistance. This study can provide insights into how insects adapt to desiccating environments, and has particular relevance to the prediction of insect pest outbreaks under future warming scenarios. Abstract The impact of drought on insects has become increasingly evident in the context of global climate change, but the physiological mechanisms of aphids’ responses to desiccating environments are still not well understood. We sampled the wheat aphid Sitobion avenae (Fabricius) (Hemiptera: Aphididae) from arid areas of northwestern China. Both desiccation-resistant and -nonresistant genotypes were identified, providing direct evidence of genetic divergence in desiccation resistance of S. avenae. Resistant genotypes of wingless S. avenae showed longer survival time and LT50 under the desiccation stress (i.e., 10% relative humidity) than nonresistant genotypes, and wingless individuals tended to have higher desiccation resistance than winged ones. Both absolute and relative water contents did not differ between the two kinds of genotypes. Resistant genotypes had lower water loss rates than nonresistant genotypes for both winged and wingless individuals, suggesting that modulation of water loss rates could be the primary strategy in resistance of this aphid against desiccation stress. Contents of cuticular hydrocarbons (CHC) (especially methyl-branched alkanes) showed significant increase for both resistant and nonresistant genotypes after exposure to the desiccation stress for 24 h. Under desiccation stress, survival time was positively correlated with contents of methyl-branched alkanes for resistant genotypes. Thus, the content of methyl-branched alkanes and their high plasticity could be closely linked to water loss rate and desiccation resistance in S. avenae. Our results provide insights into fundamental aspects and underlying mechanisms of desiccation resistance in aphids, and have significant implications for the evolution of aphid populations in the context of global warming.
A Bow-Net Trap for Ducks

The nest trap described herein is a modification of a trap as old as the history of wildfowling. The principle is that of a net-covered hoop that pivots on an axle and falls or flips over the prey when activated by various release mechanisms. Earlier forms of traps using this principle are described by MacPherson (1897); the most similar one was the "Chinese Nightingale trap. " The Chinese trap was designed to capture birds for market and was activated by the bird with no consideration for its safety or welfare. One of the most recent uses of the principle was by Sowls (1949) in his nesting studies at the Delta Marsh in Manitoba. Sowls' trap employed a square bail with lead weights along the top; the weights increased the speed of fall and decreased the bounce of the bail. The trap was set by being propped open over the nest with a stick. It was released by jerking a string tied to the stick, allowing the bail to fall by gravity. This arrangement made it necessary for the hen to walk past the stick and under the net-covered bail to reach her nest. The spring-powered bow-net trap described here (Fig. 1A) cannot be accidentally sprung; therefore, it can be set and left until the operator is ready to trap the nesting hen. No obstruction appears above the nest to disturb the hen or influence her to desert. The trap operates efficiently in many types of cover, including buckbrush (Symphoricarpos occidentalis).
Fast Starters and Slow Starters After Hip Arthroscopy for Femoroacetabular Impingement: Correlation of Early Postoperative Pain and 2-Year Outcomes

Background: Patients experience varying degrees of pain and symptoms during the early recovery period after hip arthroscopy for femoroacetabular impingement (FAI). Some “fast starters” report minimal discomfort and are eager to advance activities, while “slow starters” describe severe pain and limitations. The relationship between these early postoperative symptoms and 2-year outcomes after hip arthroscopy is unknown. Purpose: To analyze the relationship between early postoperative pain and 2-year patient-reported outcomes (PROs) after hip arthroscopy for FAI. Study Design: Cohort study; Level of evidence, 2. Methods: Patients without arthritis or dysplasia who were undergoing primary hip arthroscopy for FAI were prospectively enrolled and completed validated PROs. Scores for visual analog scale (VAS) for pain were collected preoperatively and at 1 week, 6 weeks, and 2 years postoperatively. Scores for the modified Harris Hip Score (mHHS), Hip disability and Osteoarthritis Outcome Score (HOOS), and 12-Item Short Form Health Survey (SF-12) were collected preoperatively and 2 years postoperatively. Paired t tests were used to evaluate PRO score changes, and correlation analyses were used to assess relationships between early postoperative pain and 2-year postoperative outcomes. Results: A total of 166 patients were included (55% female; mean ± SD age, 35.29 ± 9.6 years; mean body mass index, 25.07 ± 3.98 kg/m2). Patients demonstrated significant improvements in PRO scores (VAS, SF-12 Physical Component Score, mHHS, and all HOOS subscales) at 2 years after hip arthroscopy for FAI (P < .001). There was a significant correlation between lower 1-week VAS pain level (fast starters) and lower 2-year VAS pain level (R = 0.31; P < .001) as well as higher 2-year PRO scores (SF-12 Physical Component Score, mHHS, and all HOOS subscales: R = −0.21 to −0.3; P < .001). There was no correlation between 1-week VAS pain and 2-year SF-12 Mental Component Score (P = .17). Preoperative VAS pain levels showed positive correlations with 1-week postoperative pain scores (R = 0.39; P < .001) and negative correlations with 2-year patient outcomes (R = −0.15 to −0.33, P < .01). There was no correlation between 6-week postoperative pain scores and 2-year PRO scores. Conclusion: Fast starters after hip arthroscopy for FAI experience sustained improvements in outcomes at 2 years after surgery. Patient pain levels before surgery may delineate potential fast starters and slow starters.
Integrin and autocrine IGF2 pathways control fasting insulin secretion in β-cells

Elevated levels of fasting insulin release and insufficient glucose-stimulated insulin secretion (GSIS) are hallmarks of diabetes. Studies have established cross-talk between integrin signaling and insulin activity, but more details of how integrin-dependent signaling impacts the pathophysiology of diabetes are needed. Here, we dissected integrin-dependent signaling pathways involved in the regulation of insulin secretion in β-cells and studied their link to the still debated autocrine regulation of insulin secretion by insulin/insulin-like growth factor (IGF) 2–AKT signaling. We observed for the first time a cooperation between different AKT isoforms and focal adhesion kinase (FAK)–dependent adhesion signaling, which either controlled GSIS or prevented insulin secretion under fasting conditions. Indeed, β-cells form integrin-containing adhesions, which provide anchorage to the pancreatic extracellular matrix and are the origin of intracellular signaling via FAK and paxillin. Under low-glucose conditions, β-cells adopt a starved adhesion phenotype consisting of actin stress fibers and large peripheral focal adhesion. In contrast, glucose stimulation induces cell spreading, actin remodeling, and point-like adhesions that contain phospho-FAK and phosphopaxillin, located in small protrusions. Rat primary β-cells and mouse insulinomas showed an adhesion remodeling during GSIS resulting from autocrine insulin/IGF2 and AKT1 signaling. However, under starving conditions, the maintenance of stress fibers and the large adhesion phenotype required autocrine IGF2-IGF1 receptor signaling mediated by AKT2 and elevated FAK-kinase activity and ROCK-RhoA levels but low levels of paxillin phosphorylation. This starved adhesion phenotype prevented excessive insulin granule release to maintain low insulin secretion during fasting. Thus, deregulation of the IGF2 and adhesion-mediated signaling may explain dysfunctions observed in diabetes.
The Influence of Shell Thickness on Hatchability in Commercial Broiler Breeder Flocks

Abstract The hatchability of then and thick shelled eggs was compared for 25 broiler breeder flocks. Shell thickness of the eggs was determined by using salt solutions with specific gravities of 1.075, 1.080 and 1.085 to measure the average egg specific gravity. Eggs that floated in solutions with specific gravities of 1.080 or lower were classified as thin shelled. The average specific gravity for the flocks in this study declined below the industry standard of 1.080 at 42 weeks of age. Greater numbers of embryos in thin shelled eggs died throughout incubation, and hatchability was lower than in thick shelled eggs. Using salt solutions to determine shell thickness had little or no effect on the hatchability of the eggs tested.
Visual Scene-Aware Hybrid and Multi-Modal Feature Aggregation for Facial Expression Recognition

Facial expression recognition (FER) technology has made considerable progress with the rapid development of deep learning. However, conventional FER techniques are mainly designed and trained for videos that are artificially acquired in a limited environment, so they may not operate robustly on videos acquired in a wild environment suffering from varying illuminations and head poses. In order to solve this problem and improve the ultimate performance of FER, this paper proposes a new architecture that extends a state-of-the-art FER scheme and a multi-modal neural network that can effectively fuse image and landmark information. To this end, we propose three methods. To maximize the performance of the recurrent neural network (RNN) in the previous scheme, we first propose a frame substitution module that replaces the latent features of less important frames with those of important frames based on inter-frame correlation. Second, we propose a method for extracting facial landmark features based on the correlation between frames. Third, we propose a new multi-modal fusion method that effectively fuses video and facial landmark information at the feature level. By applying attention based on the characteristics of each modality to the features of the modality, novel fusion is achieved. Experimental results show that the proposed method provides remarkable performance, with 51.4% accuracy for the wild AFEW dataset, 98.5% accuracy for the CK+ dataset and 81.9% accuracy for the MMI dataset, outperforming the state-of-the-art networks.
Biotechnological Approaches to Evolve Sorghum (Sorghum bicolor (L.) Moench) for Drought Stress Tolerance and Shoot fly Resistance

Sorghum is a model tropical grass that uses C4 photosynthetic activity. But its yield is affected by many abiotic stresses likeheat, drought, cold, salt and also biotic stresses such as shoot fly, midges, and stem borerfromseedling stages to maturity. This article summarizes the terminal drought stress tolerance mechanism with staygreen phenotype expression during postflowering and also mechanisms of early shoot fly resistance during seedling stages of crop growth. The trait stay-green is extensively studied and its correlation to yield makes the stay-green trait more special for research and in marker assisted back cross programs. Under terminal drought stress conditions, stay-green trait is expressed with a complex mechanism involving many transcription factors, chlorophyll retention and nitrogen remobilization from leaves to maintain longer photosynthetic activity. Shoot fly resistance on the other hand, involves manyphysico-chemical, biologicaland morphological traits. Out of the many morphological traits, seedling leaf blade glossiness and trichome density are well characterized at genetic level and can assist as shoot fly resistance sources in marker-assisted breeding programs as they are highly negatively correlated with shoot fly dead heart formation. However, quantitative trait loci (QTL) mapping studies and candidate genes identified for the stay-green and shoot fly component traits need to be further validated with fine mapping, gene cloning and expression level studies. Pyramiding these two traits into a high yielding sorghum variety may lead to multiple stress resistance which could ultimately benefit the marginal farmers in India.
A Modified Kalman Filter for Integrating the Different Rate Data of Gyros and Accelerometers Retrieved from Android Smartphones in the GNSS/IMU Coupled Navigation

Recent study indicates that by using the inertial measurement unit (IMU) sensors inside smartphones, we can obtain similar navigation solutions to the professional ones. However, the sampling rates of the gyros and accelerometers inside some types of smartphones are not set in the same frequencies, i.e., the gyros of “Huawei p40” are in 50 Hz while the accelerometer is 100 Hz. The conventional method is resampling the higher frequency to the lower frequency ones, which means the resampled accelerometer will lose half frequency observations. In this work, a modified Kalman filter was proposed to integrate all these different rate IMU data in the GNSS/IMU-smartphone coupled navigation. To validate the proposed method, a terrestrial test with two different types of android smartphones was done. With the proposed method, a slight improvement of the attitude solutions can be seen in the experiments under the GNSS open-sky condition, and the obvious improvement of the attitude solutions can be witnessed at the simulated GNSS denied situation. The improvements by 45% and 23% of the horizontal position accuracy can be obtained from the experiments under the GNSS outage of 50 s in a straight line and 30 s in a turning line, respectively.