Miracle-dz/UniFAR-FTUs huggingface dataset:
Overcoming challenges in minimally invasive gynecologic surgery

: Minimally invasive surgery (MIS) has gained widespread use over the past several decades and is now the prevailing surgical approach within gynecology through utilization of hysteroscopy, cystoscopy, laparoscopy, and vaginal surgery. A minimally invasive technique offers a number of benefits to patients, including improved postoperative recovery and superior cosmetic outcomes, and is becoming an increasingly recognized essential skill for all gynecologists. With appropriate precautions and preoperative planning, MIS has been shown to be a safe and effective option for gynecologic procedures. Certain patient populations may present specific challenges to the minimally invasive surgeon. In this article, we discuss commonly encountered challenges in gynecologic MIS. Given the effect that laparoscopy and positioning may have on organ physiology, we review preoperative planning and optimization for medically complex patients. Additionally, we discuss the approach to surgically complex patients, such as those with obesity, pregnancy, prior surgeries with associated scarring and adhesions, and other anatomic abnormalities. As MIS continues to be a growing and evolving field, we highlight novel surgical technologies and discuss the learning curve associated with adoption of new techniques. Through surgeon preparedness and experience, common pitfalls within the field of MIS may be avoided and patients may be provided with optimal care.
Association between the Psychological Effects of Viewing Forest Landscapes and Trait Anxiety Level

The aim of this study was to validate the psychological advantages of viewing forest landscapes. Moreover, the associations between trait anxiety levels and psychological responses were evaluated. A total of 650 university male students (age, 21.7 ± 1.6 years) viewed a scenery in a forested area and an urban area for 15 min. Furthermore, the Profile of Mood States questionnaire and State-Trait Anxiety Inventory were employed for the assessment of the psychological responses and the level of trait anxiety, respectively, of the participants. Results showed that compared with viewing a city area, viewing forest areas increased positive mood state, such as vigor, and decreased negative mood states. Furthermore, trait anxiety level and changes in the psychological responses such as depression–dejection, fatigue, and confusion after viewing forest landscapes were significantly correlated. The participants with high anxiety levels had greater reduction in negative mood state, including confusion, than those with low anxiety levels. In conclusion, viewing forest landscapes induced psychological relaxation, which was more evident in individuals with high anxiety levels.
Characterizing Gene Copy Number of Heat Shock Protein Gene Families in the Emerald Rockcod, Trematomus bernacchii

The suborder Notothenioidae is comprised of Antarctic fishes, several of which have lost their ability to rapidly upregulate heat shock proteins in response to thermal stress, instead adopting a pattern of expression resembling constitutive genes. Given the cold-denaturing effect that sub-zero waters have on proteins, evolution in the Southern Ocean has likely selected for increased expression of molecular chaperones. These selective pressures may have also enabled retention of gene duplicates, bolstering quantitative output of cytosolic heat shock proteins (HSPs). Given that newly duplicated genes are under more relaxed selection, it is plausible that gene duplication enabled altered regulation of such highly conserved genes. To test for evidence of gene duplication, copy number of various isoforms within major heat shock gene families were characterized via qPCR and compared between the Antarctic notothen, Trematomus bernacchii, which lost the inducible heat shock response, and the non-Antarctic notothen, Notothenia angustata, which maintains an inducible heat shock response. The results indicate duplication of isoforms within the hsp70 and hsp40 super families have occurred in the genome of T. bernacchii. The findings suggest gene duplications may have been critical in maintaining protein folding efficiency in the sub-zero waters and provided an evolutionary mechanism of alternative regulation of these conserved gene families.
Universal nonselective excitation and refocusing pulses with improved robustness to off‐resonance for Magnetic Resonance Imaging at 7 Tesla with parallel transmission

In MRI at ultra‐high field, the kT ‐point and spiral nonselective (SPINS) pulse design techniques can be advantageously combined with the parallel transmission (pTX) and universal pulse techniques to create uniform excitation in a calibration‐free manner. However, in these approaches, pulse duration is typically increased as compared to standard hard pulses, and excitation quality in regions exhibiting large resonance frequency offsets often suffer. This limitation is inherent to structure of kT ‐point or SPINS pulse, and likely can be mitigated using parameterization‐free pulse design approaches.
The use of multidimensional scaling in analysing multi-attribute genotype response across environments

Three-way Multidimensional Scaling is presented as a single analysis of genotype x environment x attribute data. The concept and underlying model of this technique are discussed, and its usefulness is investigated by applying the analysis to a well-known soybean data set. The measured attributes were considered to represent the line response in each environment. It was assumed the lines could be considered in an underlying space of r dimensions. The environments were able to perceive different response patterns in that different importances could be placed on these underlying dimensions. By applying this technique a spatial representation of the lines in a low-dimensional space was obtained. Thus a single multi-attribute analysis is achieved rather than attempting to combine separate analyses for each attribute. The resulting line response pattern was examined in relation to previous reports on this data set. The inclusion of all six attributes revealed information not previously obtained by separate analysis of two of these attributes. If general inference about genotype response is to be made rather than inference on one particular attribute, then the use of a technique such as this is recommended.
Sam68 splicing regulation contributes to motor unit establishment in the postnatal skeletal muscle

Sam68 ensures the establishment of neuromuscular junctions (NMJs) and motor unit integrity by orchestrating a neuronal splicing program. RNA-binding proteins orchestrate the composite life of RNA molecules and impact most physiological processes, thus underlying complex phenotypes. The RNA-binding protein Sam68 regulates differentiation processes by modulating splicing, polyadenylation, and stability of select transcripts. Herein, we found that Sam68−/− mice display altered regulation of alternative splicing in the spinal cord of key target genes involved in synaptic functions. Analysis of the motor units revealed that Sam68 ablation impairs the establishment of neuromuscular junctions and causes progressive loss of motor neurons in the spinal cord. Importantly, alterations of neuromuscular junction morphology and properties in Sam68−/− mice correlate with defects in muscle and motor unit integrity. Sam68−/− muscles display defects in postnatal development, with manifest signs of atrophy. Furthermore, fast-twitch muscles in Sam68−/− mice show structural features typical of slow-twitch muscles, suggesting alterations in the metabolic and functional properties of myofibers. Collectively, our data identify a key role for Sam68 in muscle development and suggest that proper establishment of motor units requires timely expression of synaptic splice variants.
Association between Biomarkers of Cardiovascular Diseases and the Blood Concentration of Carotenoids among the General Population without Apparent Illness

Several studies have demonstrated that carotenoid-rich vegetables are useful against cardiovascular diseases (CVDs). However, it is still unclear when a healthy population should start eating these vegetables to prevent CVDs. In this study, we evaluated the role of carotenoids in CVD markers in healthy subjects using age-stratified analysis. We selected 1350 subjects with no history of apparent illness who were undergoing health examinations. We then evaluated the relationship between the serum concentrations of six major carotenoids as well as their total, and nine CVD markers (i.e., body mass index (BMI), pulse wave velocity (PWV), systolic blood pressure (SBP), diastolic blood pressure (DBP), Homeostatic Model Assessment of Insulin Resistance (HOMA-IR), blood insulin, fasting blood glucose (FBG), triglycerides (TGs), and high-density lipoprotein (HDL) cholesterol) using multiple regression analysis. It was found that the total carotenoid level was significantly associated with seven markers other than BMI and FBG in males and with eight markers other than DBP in females. Many of these relationships were independent of lifestyle habits. Many significant relationships were found in young males (aged 20–39) and middle-aged females (aged 40–59). These findings can be used as lifestyle guidance for disease prevention although the causal relationships should be confirmed.
Extracellular Vesicle Membrane-Associated Proteins: Emerging Roles in Tumor Angiogenesis and Anti-Angiogenesis Therapy Resistance

The tumor vasculature is essential for tumor growth and metastasis, and is a prime target of several anti-cancer agents. Increasing evidence indicates that tumor angiogenesis is stimulated by extracellular vesicles (EVs) that are secreted or shed by cancer cells. These EVs encapsulate a variety of biomolecules with angiogenic properties, and have been largely thought to stimulate vessel formation by transferring this luminal cargo into endothelial cells. However, recent studies have revealed that EVs can also signal to recipient cells via proteins on the vesicular surface. This review discusses and integrates emerging insights into the diverse mechanisms by which proteins associate with the EV membrane, the biological functions of EV membrane-associated proteins in tumor angiogenesis, and the clinical significance of these proteins in anti-angiogenic therapy.
Arachidonic Acid as an Early Indicator of Inflammation during Non-Alcoholic Fatty Liver Disease Development

Non-alcoholic fatty liver disease (NAFLD) is a chronic liver disease characterized by excessive lipid deposition. Lipid metabolism disturbances are possibly associated with hepatocyte inflammation development and oxidative balance impairment. The aim of our experiment was to examine the first moment when changes in plasma and liver arachidonic acid (AA) levels as a pro-inflammatory precursor may occur during high-fat diet (HFD)-induced NAFLD development. Wistar rats were fed a diet rich in fat for five weeks, and after each week, inflammation and redox balance parameters were evaluated in the liver. The AA contents in lipid fractions were assessed by gas–liquid chromatography (GLC). Protein expression relevant to inflammatory and lipogenesis pathways was determined by immunoblotting. The oxidative system indicators were determined with assay kits. Our results revealed that a high-fat diet promoted an increase in AA levels, especially in the phospholipid (PL) fraction. Importantly, rapid inflammation development via increased inflammatory enzyme expression, elevated lipid peroxidation product content and oxidative system impairment was caused by the HFD as early as the first week of the experiment. Based on these results, we may postulate that changes in AA content may be an early indicator of inflammation and irreversible changes in NAFLD progression.
Stomatal control of xylem embolism

Abstract. The potential role of stomatal closure in the control of xylem embolism is investigated by means of a simple model of hydraulic flow in plants. Maintenance of a maximally efficient conducting system requires the stomata to close in an appropriate fashion as evaporative demand increases in order to prevent shoot water potentials falling below the threshold value at which cavitations occur. The model showed that the optimal stomatal behaviour required depends on soil water availability. Further analysis of the model demonstrated that there could be certain circumstances where loss of a proportion of the conducting tissue by embolisms can, perhaps surprisingly, be beneficial in terms of maximizing stomatal aperture and hence short-term productivity. The results are discussed in relation to the signals controlling stomatal aperture, and it is shown that (1) optimal control cannot be obtained using information on leaf water potential alone, and (2) information relating to soil water potential is a necessary requirement for optimal control.
Evolutionary history of major chemosensory gene families across Panarthropoda.

Chemosensory perception is a fundamental biological process of particular relevance in basic and applied arthropod research. However, apart from insects, there is little knowledge of specific molecules involved in this system, which is restricted to a few taxa with uneven phylogenetic sampling across lineages. From an evolutionary perspective, onychophorans (velvet worms) and tardigrades (water bears) are of special interest since they represent the closest living relatives of arthropods, altogether comprising the Panarthropoda. To get insights into the evolutionary origin and diversification of the chemosensory gene repertoire in panarthropods, we sequenced the antenna- and head-specific transcriptomes of the velvet worm Euperipatoides rowelli and analyzed members of all major chemosensory families in representative genomes of onychophorans, tardigrades and arthropods. Our results suggest that the NPC2 gene family was the only family encoding soluble proteins in the panarthropod ancestor and that onychophorans might have lost many arthropod-like chemoreceptors, including the highly conserved IR25a receptor of protostomes. On the other hand, the eutardigrade genomes lack genes encoding the DEG-ENaC and CD36-SNMP proteins, the chemosensory members of which have been retained in arthropods; these losses might be related to lineage-specific adaptive strategies of tardigrades to survive extreme environmental conditions. Although the results of this study need to be further substantiated by an increased taxon sampling, our findings shed light on the diversification of chemosensory gene families in Panarthropoda and contribute to a better understanding of the evolution of animal chemical senses.
CIR-Net: Automatic Classification of Human Chromosome Based on Inception-ResNet Architecture

Background: In medicine, karyotyping chromosomes is important for medical diagnostics, drug development, and biomedical research. Unfortunately, chromosome karyotyping is usually done by skilled cytologists manually, which requires experience, domain expertise, and considerable manual efforts. Therefore, automating the karyotyping process is a significant and meaningful task. Method: This paper focuses on chromosome classification because it is critical for chromosome karyotyping. In recent years, deep learning-based methods are the most promising methods for solving the tasks of chromosome classification. Although the deep learning-based Inception architecture has yielded state-of-the-art performance in the 2015 ILSVRC challenge, it has not been used in chromosome classification tasks so far. Therefore, we develop an automatic chromosome classification approach named CIR-Net based on Inception-ResNet which is an optimized version of Inception. However, the classification performance of origin Inception-ResNet on the insufficient chromosome dataset still has a lot of capacity for improvement. Further, we propose a simple but effective augmentation method called CDA for improving the performance of CIR-Net. Results: The experimental results show that our proposed method achieves 95.98 percent classification accuracy on the clinical G-band chromosome dataset whose training dataset is insufficient. Moreover, the proposed augmentation method CDA improves more than 8.5 percent (from 87.46 to 95.98 percent) classification accuracy comparing to other methods. In this paper, the experimental results demonstrate that our proposed method is recent the most effective solution for solving clinical chromosome classification problems in chromosome auto-karyotyping on the condition of the insufficient training dataset. Code and Dataset are available at https://github.com/CloudDataLab/CIR-Net.
ELASTICITIES: A REVIEW OF METHODS AND MODEL LIMITATIONS

Elasticity is a perturbation measure in matrix projection models that quantifies the proportional change in population growth rate as a function of a proportional change in a demographic transition (growth, survival, reproduction, etc.). Elasticities thus indicate the relative “importance” of life cycle transitions for population growth and maintenance. In this paper, we discuss the applications of elasticity analysis, and its extension, loop analysis, in life history studies and conservation. Elasticity can be interpreted as the relative contribution of a demographic parameter to population growth rate. Loop analysis reveals the underlying pathway structure of the life cycle graph. The different kinds of results of the two analyses in studies of life histories are emphasized. Because elasticities quantify the relative importance of life cycle transitions to population growth rate, it is generally inferred that management should focus on the transitions with the largest elasticities. Such predictions based on elasticities seem robust, but we do identify three situations where problems may arise. The mathematical properties and biological constraints that underlie these pitfalls are explained. Examples illustrate the additional information that needs to be taken into account for a sensible use of elasticities in population management. We conclude by indicating topics that are in need of research.
A Preliminary Study to Investigate the Sensemaking Process of UAV Reports by Operators after Periods of Disconnect for Threat Assessment

Teleoperated robots have been used to minimize human presence and interaction in dangerous or difficult areas or to enhance human capabilities. One of the challenges that still needs investigation is human-robot communication regarding making decisions based on extracted information. As such, the purpose of this research is to address issues of decision making after communication disconnections through interface design by focusing on improving sensemaking. Analyzing the effects of interface design in a UAV threat assessment scenario is ideal to examine not only the sensemaking process but also how that process defines decision making in an environment where efficient decision making and low clutter displays are needed. The data from this study will serve determine elements of an optimal interface for information assimilation. Twenty participants were recruited to complete a series of sixteen threat assessment decisions with different interface designs, varying amounts of information and layouts of information. It was observed that level of detailed information had a significant effect on the subjective trust and decision selected and display layout had a significant effect on the time taken to complete a decision.
Instrumentation-Free Semiquantitative Immunoanalysis Using a Specially Patterned Lateral Flow Assay Device

In traditional colorimetric lateral flow immunoassay (LFI) using gold nanoparticles (AuNPs) as a probe, additional optical transducers are required to quantify the signal intensity of the test line because it presents as a single red-colored line. In order to eliminate external equipment, the LFI signal should be quantifiable by the naked eye without the involvement of optical instruments. Given this objective, the single line test zone of conventional LFI was converted to several spots that formed herringbone patterns. When the sandwich immunoassay was performed on a newly developed semi-quantitative (SQ)-LFI system using AuNPs as an optical probe, the spots were colorized and the number of colored spots increased proportionally with the analyte concentration. By counting the number of colored spots, the analyte concentration can be easily estimated with the naked eye. To demonstrate the applicability of the SQ-LFI system in practical immunoanalysis, microalbumin, which is a diagnostic marker for renal failure, was analyzed using microalbumin-spiked artificial urine samples. Using the SQ-LFI system, the calibration results for artificial urine-based microalbumin were studied, ranging from 0 to 500 μg/mL, covering the required clinical detection range, and the limit of detection (LOD) value was calculated to be 15.5 μg/mL. Thus, the SQ-LFI system provides an avenue for the realization of an efficient quantification diagnostic device in resource-limited conditions.
Targeting on Gut Microbiota-Derived Metabolite Trimethylamine to Protect Adult Male Rat Offspring against Hypertension Programmed by Combined Maternal High-Fructose Intake and Dioxin Exposure

Gut microbiota-dependent metabolites, in particular trimethylamine (TMA), are linked to hypertension. Maternal 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) exposure or consumption of food high in fructose (HFR) can induce hypertension in adult offspring. We examined whether 3,3-maternal dimethyl-1-butanol (DMB, an inhibitor of TMA formation) therapy can protect adult offspring against hypertension arising from combined HFR and TCDD exposure. Pregnant Sprague–Dawley rats received regular chow or chow supplemented with fructose (60% diet by weight) throughout pregnancy and lactation. Additionally, the pregnant dams received TCDD (200 ng/kg BW orally) or a corn oil vehicle on days 14 and 21 of gestation, and days 7 and 14 after birth. Some mother rats received 1% DMB in their drinking water throughout pregnancy and lactation. Six groups of male offspring were studied (n = 8 for each group): regular chow (CV), high-fructose diet (HFR), regular diet+TCDD exposure (CT), HFR+TCDD exposure (HRT), high-fructose diet+DMB treatment (HRD), and HFR+TCDD+DMB treatment (HRTD). Our data showed that TCDD exacerbates HFR-induced elevation of blood pressure in male adult offspring, which was prevented by maternal DMB administration. We observed that different maternal insults induced distinct enterotypes in adult offspring. The beneficial effects of DMB are related to alterations of gut microbiota, the increase in nitric oxide (NO) bioavailability, the balance of the renin-angiotensin system, and antagonization of aryl hydrocarbon receptor (AHR) signaling. Our findings cast new light on the role of early intervention targeting of the gut microbiota-dependent metabolite TMA, which may allow us to prevent the development of hypertension programmed by maternal excessive fructose intake and environmental dioxin exposure.