Miracle-dz/UniFAR-FTUs huggingface dataset:
Honokiol ameliorates radiation-induced brain injury via the activation of SIRT3

Objective Sirtuin 3 (SIRT3) plays a vital role in regulating oxidative stress in tissue injury. The aim of this study was to evaluate the radioprotective effects of honokiol (HKL) in a zebrafish model of radiation-induced brain injury and in HT22 cells. Methods The levels of reactive oxygen species (ROS), tumor necrosis factor-alpha (TNF-α), and interleukin-1 beta (IL-1β) were evaluated in the zebrafish brain and HT22 cells. The expression levels of SIRT3 and cyclooxygenase-2 (COX-2) were measured using western blot assays and real-time polymerase chain reaction (RT-PCR). Results HKL treatment attenuated the levels of ROS, TNF-α, and IL-1β in both the in vivo and in vitro models of irradiation injury. Furthermore, HKL treatment increased the expression of SIRT3 and decreased the expression of COX-2. The radioprotective effects of HKL were achieved via SIRT3 activation. Conclusions HKL attenuated oxidative stress and pro-inflammatory responses in a SIRT3-dependent manner in radiation-induced brain injury.
Lack of observed movement response to lead exposure of California condors

Lead poisoning is an important conservation concern for wildlife, and scavenging birds are especially at risk from consumption of carcasses of animals killed with lead ammunition. Because current methods to identify lead exposure require animal capture and blood collection, management would benefit from the development of a less costly and noninvasive behavioral test for illness in wild animals. We attempted to design such a test to identify lead exposure in California condors (Gymnogyps californianus) that we tracked with global positioning system (GPS) telemetry in southern California, USA, 2013–2016. We measured blood-lead concentrations in tracked birds and expected that flight behavior would be influenced by lead exposure; thus, we measured the effect of blood-lead concentrations on 2 different types of movement rates and on the proportion of time condors spent in flight. We found no effect of lead exposure on any of these 3 behavioral metrics. Our work suggests that the measurements we took of flight behaviors were not a useful tool in predicting lead exposure in the mildly to moderately exposed birds we studied. Wild birds are effective at hiding illness, especially condors who have a strong social hierarchy in which showing weakness is a disadvantage. However, focusing on behaviors other than flight, expanding the sample studied to include birds with a wider range of lead concentration values, or analyzing tissues such as feathers (rather than, or in addition to, blood) may be more useful for identification of lead exposure and other diseases that may limit wildlife populations. 2017 This article is a U.S. Government work and is in the public domain in the USA.
Referral to the national network of integrated care: the nurses’ perception

Objective: to understand the referral to the National Network of Integrated Continuous Care, from the perspective of nurses who work in this care context. Method: an exploratory and descriptive study with a qualitative approach, with data collection between July and September 2019 through interviews with 12 nurses who work in Integrated Continuous Care Teams, in Northern Portugal. The content analysis technique was used to analyze the statements. Results: the professionals revealed that there are difficulties and constraints in the process of referring users to the National Network of Integrated Continuous Care. The process is bureaucratic, complex, and time-consuming, conditioning user accessibility to timely care. Conclusion: the referral process is a very bureaucratic and time-consuming procedure, which not only conditions and delays users’ access to the National Network of Integrated Continuous Care network, contributing to the worsening of the clinical status of some patients. The number of professionals is insufficient, inducing the demand for services through urgency. The focus on primary care should seek to improve inequalities in access, compete for more equitable and accessible care, generating more quality in health care.
Non‐operative management for small bowel obstruction in a virgin abdomen: a systematic review

Small bowel obstruction (SBO) is a common general surgical presentation and there has been a shift towards non‐operative management (NOM) for patients with previous abdominal surgery. Historically, exploratory surgery has been mandated for SBO in patients with a virgin abdomen. However, there is increasing evidence for NOM in this group of patients.
LRP8 (rs5177) and CEP85L (rs11756438) are contributed to schizophrenia susceptibility in Iranian population

Introduction Schizophrenia is recognized as one of the most important mental illnesses of the last century. Many genetic and environmental factors are involved in this condition. Recently, the genome-wide association study identified two significant genes LRP8 and CEP85L associated with psychiatric disorders. LRP8 (low-density lipoprotein receptor-related protein 8) acts as a cytoplasmic receptor for Reelin. Many studies have revealed that LRP8 was significantly related to schizophrenia and bipolar disorder in Chinese population. CEP85L standing for ‘centrosomal protein 85 kDa-like’ is another gene, which has been reportedly associated with BPD. Methods We performed a case-control study to analyze the association between rs5177 single-nucleotide polymorphism in the LRP8 gene plus the single-nucleotide polymorphism rs11756438 in the CEP85L gene and schizophrenia in the Iranian population. The genotype for rs5177 was determined by ARMS PCR method, while for rs11756438 genotype, it was determined by PCR-RFLP method after which statistical analysis was performed for each polymorphism. In rs5177, the CC genotype was susceptible to the disease while G allele was associated with disease protection. Results and Conclusion In rs11756438, the AA genotype was associated with disease susceptibility, while allele A did not have a significant association with the disease.
Synthetic gene-regulatory networks in the opportunistic human pathogen Streptococcus pneumoniae

Significance Streptococcus pneumoniae is a major human pathogen responsible for enormous global morbidity and mortality. Despite this, the pneumococcus makes up part of the commensal nasopharyngeal flora. How the pneumococcus switches from this commensal to pathogenic state and causes disease is unclear and very likely involves variability in expression of its virulence factors. Here, we used synthetic biology approaches to generate complex gene-regulatory networks such as logic gates and toggle switches. We show that these networks are functional in vivo to control capsule production in an influenza-superinfection model. This opens the field of systematically testing the role of phenotypic variation in pneumococcal virulence. The approaches used here may serve as an example for synthetic biology projects in unrelated organisms. Streptococcus pneumoniae can cause disease in various human tissues and organs, including the ear, the brain, the blood, and the lung, and thus in highly diverse and dynamic environments. It is challenging to study how pneumococci control virulence factor expression, because cues of natural environments and the presence of an immune system are difficult to simulate in vitro. Here, we apply synthetic biology methods to reverse-engineer gene expression control in S. pneumoniae. A selection platform is described that allows for straightforward identification of transcriptional regulatory elements out of combinatorial libraries. We present TetR- and LacI-regulated promoters that show expression ranges of four orders of magnitude. Based on these promoters, regulatory networks of higher complexity are assembled, such as logic AND gates and IMPLY gates. We demonstrate single-copy genome-integrated toggle switches that give rise to bimodal population distributions. The tools described here can be used to mimic complex expression patterns, such as the ones found for pneumococcal virulence factors. Indeed, we were able to rewire gene expression of the capsule operon, the main pneumococcal virulence factor, to be externally inducible (YES gate) or to act as an IMPLY gate (only expressed in absence of inducer). Importantly, we demonstrate that these synthetic gene-regulatory networks are functional in an influenza A virus superinfection murine model of pneumonia, paving the way for in vivo investigations of the importance of gene expression control on the pathogenicity of S. pneumoniae.
Rate of Force Development Remains Reduced in the Knee Flexors 3 to 9 Months After Anterior Cruciate Ligament Reconstruction Using Medial Hamstring Autografts: A Cross-Sectional Study

Background: Anterior cruciate ligament (ACL) rupture is a serious injury with a high prevalence worldwide, and subsequent ACL reconstructions (ACLR) appear to be most commonly performed using hamstring-derived (semitendinosus tendon) autografts. Recovery of maximal muscle strength to ≥90% of the healthy contralateral limb is considered an important criterion for safe return to sports. However, the speed of developing muscular force (ie, the rate of force development [RFD]) is also important for the performance of many types of activities in sports and daily living, yet RFD of the knee extensor and flexor muscles has apparently never been examined in patients who undergo ACLR with hamstring autograft (HA). Purpose: To examine potential deficits in RFD, maximal muscle strength (ie, maximal voluntary isometric contraction [MVIC]), and functional capacity of ACLR-HA limbs in comparison with the healthy contralateral leg and matched healthy controls 3 to 9 months after surgery. Study Design: Cross-sectional study; Level of evidence: 3. Methods: A total of 23 young patients who had undergone ACLR-HA 3 to 9 months earlier were matched by age to 14 healthy controls; both groups underwent neuromuscular screening. Knee extensor and flexor MVIC and RFD, as well as functional capacity (single-leg hop for distance [SLHD] test, timed single-leg sit-to-stand [STS] test), were assessed on both limbs. Furthermore, patient-reported knee function (Knee injury and Osteoarthritis Outcome Score) was assessed. Results: Knee extensor and flexor MVIC and RFD were markedly compromised in ACLR-HA limbs compared with healthy contralateral limbs (MVIC for extensor and flexor, 13% and 26%, respectively; RFD, 14%-17% and 32%-39%) and controls (MVIC, 16% and 31%; RFD, 14%-19% and 30%-41%) (P < .05-.001). Further, ACLR-HA limbs showed reduced functional capacity (reduced SLHD and STS performance) compared with contralateral limbs (SLHD, 11%; STS, 14%) and controls (SLHD, 20%; STS, 31%) (P < .01-.001). Strength (MVIC) and functional (SLHD) parameters were positively related to the duration of time after surgery (P < .05), although this relationship was not observed for RFD and STS. Conclusion: Knee extensor and flexor RFD and maximal strength, as well as functional single-leg performance, remained substantially reduced in ACLR-HA limbs compared with noninjured contralateral limbs and healthy controls 3 to 9 months after reconstructive surgery.
Maternal body size and condition determine calf growth rates in southern right whales

The cost of reproduction is a key parameter determining a species' life history strategy. Despite exhibiting some of the fastest offspring growth rates among mammals, the cost of reproduction in baleen whales is largely unknown since standard field metabolic techniques cannot be applied. We quantified the cost of reproduction for southern right whales Eubalaena australis over a 3 mo breeding season. We did this by determining the relationship between calf growth rate and maternal rate of loss in energy reserves, using repeated measurements of body volume obtained from un manned aerial vehicle photogrammetry. We recorded 1118 body volume estimates from 40 female and calf pairs over 40 to 89 d. Calves grew at a rate of 3.2 cm d-1 (SD = 0.45) in body length and 0.081 m3 d-1 (SD = 0.011) in body volume, while females decreased in volume at a rate of 0.126 m3 d-1 (SD = 0.036). The average volume conversion efficiency from female to calf was 68% (SD = 16.91). Calf growth rate was positively related to the rate of loss in maternal body volume, suggesting that maternal volume loss is proportional to the energy investment into her calf. Maternal in vestment was determined by her body size and condition, with longer and more rotund females investing more volume into their calves compared to shorter and leaner females. Lactating females lost on average 25% of their initial body volume over the 3 mo breeding season. This study demonstrates the considerable energetic cost that females face during the lactation period, and highlights the importance of sufficientmaternal energyreserves for reproduction in this capital breeding species.
High levels of preoperative pain and fatigue are red flags for moderate‐severe pain 12 months after total knee arthroplasty—A longitudinal cohort study

Abstract Background Moderate/severe pain after total knee arthroplasty (TKA) is a poor surgical outcome. Many studies have identified preoperative risk factors of pain after TKA, but studies of the joint contributions of co‐occurring symptoms are lacking. Methods Patients undergoing primary TKA (n = 202) were enrolled in a longitudinal cohort study. Preoperatively, patients completed questionnaires measuring demographics and symptoms (pain, fatigue, sleep problems and depression). Pain was re‐assessed 12 months after TKA. Logistic regression analysis was used to compute the probabilities of moderate‐severe pain at 12 months based on preoperative symptom levels, and results were combined into a risk matrix. Results More than one‐third (40%) of patients (n = 187) reported moderate‐severe pain after TKA. Among preoperative risk factors included in the logistic regression analyses were age, sex, pain, fatigue, sleep problems and depression. Adjusting for possible confounders, fatigue (p = 0.02) and pain (p = 0.01) were significant risk factors for moderate‐severe pain at 12‐months follow‐up and were retained in the final risk matrix. The co‐occurrence of high‐preoperative fatigue and pain scores resulted in 57% estimated probability of moderate‐severe pain at 12 months. Similarly, the co‐occurrence of low‐preoperative fatigue and pain scores resulted in 14% estimated probability of moderate‐severe pain 12 months after TKA. Conclusion The combination of high fatigue and pain scores prior to surgery was a key risk factor for moderate‐severe pain 12 months after TKA. Mapping of these factors could be used preoperatively to identify patients who are at risk to experience a poor outcome of TKA.
Prediction of acute inhalation toxicity using cytotoxicity data from human lung epithelial cell lines

Recent research on in vitro systems has focused on mimicking the in vivo situation of cells within the respiratory system. However, few studies have predicted inhalation toxicity using conventional and simple submerged two‐dimensional (2D) cell culture models. We investigated the conventional submerged 2‐D cell culture model as a method for the prediction of acute inhalation toxicity. Median lethal concentration (LC50) (rat, inhalation, 4 h) and half maximal inhibitory concentration (IC50) (lung or bronchial cell, 24 h) data for 59 substances were obtained from the literature and by experiments. Cytotoxicity assays were performed on 44 substances with reported LC50, but without IC50, data to obtain the IC50 values. A weak correlation was observed between the IC50 and LC50 of all substances. Semi‐volatile organic compounds (SVOCs) and non‐VOCs (NVOCs) (16 substances) with a water solubility of ≥1 g/L were strongly correlated between 24‐h IC50 and 4‐h LC50, and this had an excellent predictive ability to distinguish between Categories 1–3 and 4 (Globally Harmonized System classification for acute inhalation toxicity). Our results suggest that the submerged 2‐D cell culture model may be used to predict in vivo acute inhalation toxicity for substances with a water solubility of ≥1 g/L in SVOCs and NVOCs.
Efficient Resource Allocation in 5G Networks using Cognitive Radio Technology

 Abstract — The rapid development of device to device communication has resulted in increasing demand for spectrum in 5G mobile networks.An efﬁcient resource allocation for a cognitive random access network consisting of primary and secondary users is proposed to address this problem.It has been observed by the FCC(Federal Communication Commission) that the current licensed spectrum is significantly underutilized.The key idea of this algorithm is to overcome the spectrum crunch by opportunistically accessing the underutilized radio spectrum using Cognitive Radio(CR)technology.In this paper we focus on two algorithms:  The unused bandwidth of a primary user is allocated to a secondary user on one to one basis.  The unused bandwidth of a primary user is dynamically shared among two or more secondary users(shared resource allocation).
Tunable Microwave Filters Using HfO2-Based Ferroelectrics

In this paper, we present microwave filters that are based on 6-nm-thick ferroelectric thin films of hafnium oxide doped with zirconium (HfZrO), which are tunable continuously in targeted bands of interest within the frequency range 0.1–16 GHz, when the applied direct current (DC) voltage is swept between 0 V and 4 V. Here, we exploit the orthorhombic polar phase in HfO2 through a careful doping using zirconium in an Atomic Layer Deposition (ALD) process, in order to guarantee phase stabilization at room temperature. Polarization versus voltage characterization has been carried out, showing a remanent polarization (Pr) of ~0.8 μC/cm2 and the coercive voltage at ~2.6 V. The average roughness has been found to be 0.2 nm for HfZrO films with a thickness of 6 nm. The uniform topography, without holes, and the low surface roughness demonstrate that the composition and the structure of the film are relatively constant in volume. Three filter configurations (low-pass, high-pass, and band-pass) have been designed, modelled, fabricated, and fully characterized in microwaves, showing a frequency shift of the minimum of the reflection coefficient between 90 MHz and 4.4 GHz, with a minimum insertion loss of approximately 6.9 dB in high-pass configuration.
A global envelope test to detect non‐random bursts of trait evolution

The joint analysis of species’ evolutionary relatedness and their morphological evolution has offered much promise in understanding the processes that underpin the generation of biological diversity. Disparity through time (DTT) is a popular method that estimates the relative trait disparity within and between subclades, and compares this to the null hypothesis that trait values follow Brownian evolution along the time‐calibrated phylogenetic tree. To visualise the differences a confidence envelope is normally created by calculating, at every time point, the 97.5% minimum and 97.5% maximum disparity values from multiple simulations of the null model. The null hypothesis is rejected whenever the empirical DTT curve falls outside of this envelope, and these time periods may then be linked to events that may have sparked non‐random trait evolution. Here, simulated data are used to show this pointwise (ranking at each time point) method of envelope construction suffers from multiple testing and a poor, uncontrolled, false‐positive rate. As a consequence it cannot be recommended. Instead, each DTT curve can be given a single rank based upon their most extreme disparity value, relative to all other curves, and across all time points. Ordering curves this way leads to a test that avoids multiple testing, but still allows construction of a confidence envelope. The null hypothesis is rejected if the empirical DTT curve is ranked within the most extreme 5% ranked curves from the null model. Comparison of the rank envelope curve to the Morphological Disparity Index and Node Height tests shows it to have generally higher power to detect non‐Brownian trait evolution. An extension to allow simultaneous testing over multiple traits is also detailed. Overall the results suggest the new rank envelope test should be used in null model testing for DTT analyses. The rank envelope method can easily be adapted into recently developed posterior predictive simulation methods used in model selection analyses. More generally, the rank envelope test should be adopted whenever a null model produces a vector of correlated values and the user wants to determine where the empirical data are different to the null model.
The miRNA Profile in Non-Hodgkin’s Lymphoma Patients with Secondary Myelodysplasia

Myelodysplastic syndromes are a group of clonal diseases of hematopoietic stem cells and are characterized by multilineage dysplasia, ineffective hematopoiesis, peripheral blood cytopenias, genetic instability and a risk of transformation to acute myeloid leukemia. Some patients with non-Hodgkin lymphomas (NHLs) may have developed secondary myelodysplasia before therapy. Bone marrow (BM) hematopoiesis is regulated by a spectrum of epigenetic factors, among which microRNAs (miRNAs) are special. The aim of this work is to profile miRNA expression in BM cells in untreated NHL patients with secondary myelodysplasia. A comparative analysis of miRNA expression levels between the NHL and non-cancer blood disorders samples revealed that let-7a-5p was upregulated, and miR-26a-5p, miR-199b-5p, miR-145-5p and miR-150-5p were downregulated in NHL with myelodysplasia (p < 0.05). We for the first time developed a profile of miRNA expression in BM samples in untreated NHL patients with secondary myelodysplasia. It can be assumed that the differential diagnosis for blood cancers and secondary BM conditions based on miRNA expression profiles will improve the accuracy and relevance of the early diagnosis of cancerous and precancerous lesions in BM.
Toxic effect of inorganic fertilizers to earthworms (Eudrilus eugeniae)

Studies on effect of inorganic chemical fertilizers to Eudrilus eugeniae Kinberg earthworms. The results revealed that, when the food material was incorporated with various inorganic fertilizers, there was wide variation among the treatments with respect to mortality of adult and juvenile earthworms ranging from 0.00 to 100 per cent. Significantly highest per cent mortality of 100 % was recorded with urea @10g/kg vermifeed Followed by MOP @ 10g/kg vermifeed (95.00%). The lowest mortality was found in mixed with single super phosphate (SSP) @ 5g/kg vermifeed (28%). The complex fertilizers cause relatively moderate toxicity to the adults E. eugeniae earthworm. Among the micro nutrients tested for their toxicity, Zinc (Zn) and Iron (Fe) were relatively toxic to earthworm adults at both tested dosages. Zero mortality of earthworms was noticed in the control treatment (0.00%), respectively. Among inorganic fertilizers were more dangerous to earthworms when incorporate in to food material of earthworms.
The COVID-19 Pandemic from a Human Genetic Perspective

The coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has impacted a large portion of the world population. From a virus genetic perspective, a recent study described what genomic data revealed about the origin and emergence of SARS-CoV-2, proposing stronger action against illegal wildlife trade. In the current “big data” era, an increasing number of large-scale, multidimensional omics data sets were publicly available. Herein, we review how human genetics tells us about the transmission, pathogenesis, susceptibility, severity, and drug prioritization of COVID-19. We further drafted a genetic roadmap of COVID-19, which was also expected to be applicable to other viruses with known receptors. Our review provides insights into the way of understanding a pandemic from a human genetic perspective.