Miracle-dz/UniFAR-FTUs huggingface dataset:
Feeding a diet contaminated with ochratoxin A for broiler chickens at the maximum level recommended by the EU for poultry feeds (0.1 mg/kg). 2. Effects on meat quality, oxidative stress, residues and histological traits.

The European Commission Recommendation 2006/576/EC indicates that the maximum tolerable level of ochratoxin A (OTA) in poultry feeds is 0.1 mg OTA/kg. Thirty-six 1-day-old male broiler chicks were divided into two groups, a control (basal diet) and an OTA (basal diet + 0.1 mg OTA/kg) group. The OTA concentration was quantified in serum, liver, kidney, breast and thigh samples. The thiobarbituric acid reactive substances (TBARS) content were evaluated in the liver, kidney, breast and thigh samples. The glutathione (GSH) content, and catalase (CAT) and superoxide dismutase (SOD) activity were measured in the liver and kidney samples. Histopathological traits were evaluated for the spleen, bursa of Fabricius and liver samples. Moreover, the chemical composition of the meat was analysed in breast and thigh samples. In the OTA diet-fed animals, a serum OTA concentration of 1.15 ± 0.35 ng/ml was found, and OTA was also detected in kidney and liver at 3.58 ± 0.85 ng OTA/g f.w. and 1.92 ± 0.21 ng OTA/g f.w. , respectively. The TBARS content was higher in the kidney of the ochratoxin A group (1.53 ± 0.18 nmol/mg protein vs. 0.91 ± 0.25 nmol/mg protein). Feeding OTA at 0.1 mg OTA/kg also resulted in degenerative lesions in the spleen, bursa of Fabricius and liver. The maximum tolerable level of 0.1 mg OTA/kg, established for poultry feeds by the EU, represents a safe limit for the final consumer, because no OTA residues were found in breast and thigh meat. Even though no clinical signs were noticed in the birds fed the OTA-contaminated diet, moderate histological lesions were observed in the liver, spleen and bursa of Fabricius.
Matching Structural, Effective, and Functional Connectivity: A Comparison Between Structural Equation Modeling and Ancestral Graphs

In this study, we examined the accuracy of ancestral graphs (AGs) to study effective connectivity in the brain. Unlike most other methods that estimate effective connectivity, an AG is able to explicitly model missing brain regions in a network model. We compared AGs with the conventional structural equation models (SEM). We used both methods to estimate connection strengths between six regions of interest of the visual cortex based on functional magnetic resonance imaging data of a motion perception task. In order to examine which method is more accurate to estimate effective connectivity, we compared the connection strengths of the AG and SEM models with connection probabilities resulting from probabilistic tractography obtained from diffusion tensor images. This was done by correlating the connection strengths of the best fitting AG and SEM models with the connection probabilities of the probabilistic tractography models. We show that, in general, AGs result in more accurate models to estimate effective connectivity than SEM. The reason for this is that missing regions are taken into account when modeling with AG but not when modeling with SEM: AG can be used to explicitly test the assumption of missing regions. If the set of regions is complete, SEM and AG perform about equally well.
Subclinical ketosis in dairy cows: prevalence and risk factors in grazing production system.

The purpose of this study was to estimate the prevalence of Subclinical ketosis (SCK) between 4 and 19 days in milk (DIM) in a grazing production system and investigate the importance of potential risk factors for SCK. This cross-sectional study was conducted in dairy cows (n = 107), which had more of two parities. The concentration of β-hydroxybutyric (BHB) in blood was quantified through a hand-held meter. Potential risk factors evaluated were calving interval (CI), milk yield in previous lactation, metritis, dystocia, calf sex (male), parity (≤3 vs. ≥4) and pre-partum body condition score (BCS ≤ 3.5 vs. ≥3.75). Prevalence of SCK was 10.3% (95% CI 4.7-15) between 4 and 19 DIM. Risk factors identified were the occurrence of both metritis and pre-partum BCS ≥ 3.75. Cows with metritis had 4.9 (95% CI 1.17-20.98) times more risk of developing SCK than cows without metritis. And the cows with pre-partum BCS ≥ 3.75 had 5.25 (95% CI 1.32-21.11) times more risk of developing SCK than cows with pre-partum BCS ≤ 3.5. Metritis could induce a lower feed intake and promote the development of SCK. High pre-partum BCS could induce a greater mobilization of body reserves altering liver function and aggravating post-partum NEB. The results are indicative of the expected prevalence of SCK in grazing production system. Factors associated could help to identify cattle at risk of SCK and improve the management of strategies to limit the effects.
Glycemic Status and Renal Function among Type 2 Diabetics

Background: Diabetes mellitus (DM) is characterized by some specific complications including diabetic nephropathy. Urea & creatinine are useful parameters to diagnose the renal function, despite some limitations. Objective: This study aimed to analyze the effect of hyperglycemic condition on the renal function parameters like serum urea and serum creatinine. Methods: It was a cross sectional study. To determine the incidence of kidney dysfunction in type 2 diabetics in Nepalgunj Medical College and Hospital, Nepalgunj, Nepal. Random blood samples were taken from 100 diabetic subjects and 100 non-diabetic controls between the period 1st February, 2012 to 31st January, 2013 for investigation of fasting plasma glucose (FPG), blood urea and serum creatinine. These biochemical parameters were determined by using a fully automated clinical chemistry analyzer. The comparison was done by using Student ‘t’ test. Results: Our findings showed that the level of blood urea (P<0.0128 Diabetic male and P≈0.0082 Diabetic female) and serum creatinine (P<0.0001 Diabetic male and P≈0.0187 Diabetic female) were significantly higher in type 2 diabetics as compared to non-diabetics in both male and female. There was no significant difference between diabetic male and female. High serum creatinine level was seen in males than females. Conclusion: In our study there was an increase of blood urea level in type 2 DM. Good control of blood glucose level is absolute requirement to prevent progressive renal impairment. DOI: http://dx.doi. org/10.3329/bjms.v13i4. 20586 Bangladesh Journal of Medical Science Vol.13(4) 2014 p.406-410
Genipin crosslinking decreases the mechanical wear and biochemical degradation of impacted cartilage in vitro

High energy trauma to cartilage causes surface fissures and microstructural damage, but the degree to which this damage renders the tissue more susceptible to wear and contributes to the progression of post‐traumatic osteoarthritis (PTOA) is unknown. Additionally, no treatments are currently available to strengthen cartilage after joint trauma and to protect the tissue from subsequent degradation and wear. The purposes of this study were to investigate the role of mechanical damage in the degradation and wear of cartilage, to evaluate the effects of impact and subsequent genipin crosslinking on the changes in the viscoelastic parameters of articular cartilage, and to test the hypothesis that genipin crosslinking is an effective treatment to enhance the resistance to biochemical degradation and mechanical wear. Results demonstrate that cartilage stiffness decreases after impact loading, likely due to the formation of fissures and microarchitectural damage, and is partially or fully restored by crosslinking. The wear resistance of impacted articular cartilage was diminished compared to undamaged cartilage, suggesting that mechanical damage that is directly induced by the impact may contribute to the progression of PTOA. However, the decrease in wear resistance was completely reversed by the crosslinking treatments. Additionally, the crosslinking treatments improved the resistance to collagenase digestion at the impact‐damaged articular surface. These results highlight the potential therapeutic value of collagen crosslinking via genipin in the prevention of cartilage degeneration after traumatic injury. © 2016 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 35:558–565, 2017.
Investigating the Microstructural Correlation of White Matter in Autism Spectrum Disorder

White matter microstructure forms a complex and dynamical system that is critical for efficient and synchronized brain function. Neuroimaging findings in children with autism spectrum disorder (ASD) suggest this condition is associated with altered white matter microstructure, which may lead to atypical macroscale brain connectivity. In this study, we used diffusion tensor imaging measures to examine the extent that white matter tracts are interrelated within ASD and typical development. We assessed the strength of inter-regional white matter correlations between typically developing and ASD diagnosed individuals. Using hierarchical clustering analysis, clustering patterns of the pairwise white matter correlations were constructed and revealed to be different between the two groups. Additionally, we explored the use of graph theory analysis to examine the characteristics of the patterns formed by inter-regional white matter correlations and compared these properties between ASD and typical development. We demonstrate that the ASD sample has significantly less coherence in white matter microstructure across the brain compared to that in the typical development sample. The ASD group also presented altered topological characteristics, which may implicate less efficient brain networking in ASD. These findings highlight the potential of graph theory based network characteristics to describe the underlying networks as measured by diffusion magnetic resonance imaging and furthermore indicates that ASD may be associated with altered brain network characteristics. Our findings are consistent with those of a growing number of studies and hypotheses that have suggested disrupted brain connectivity in ASD.
The Resting-State Functional Magnetic Resonance Imaging Regional Homogeneity Metrics - Kendall's Coefficient of Concordance-Regional Homogeneity and Coherence-Regional Homogeneity - Are Valid Indicators of Tumor-Related Neurovascular Uncoupling

The aim of this study is to determine whether regional homogeneity (ReHo) of resting-state blood oxygenation level-dependent (BOLD) functional magnetic resonance imaging (rsfMRI) data based on Kendall's coefficient of concordance (KCC-ReHo) and coherence (Cohe-ReHo) metrics may allow detection of brain tumor-induced neurovascular uncoupling (NVU) in the sensorimotor network similar to findings in standard motor task-based BOLD fMRI (tbfMRI) activation. Twelve de novo brain tumor patients undergoing clinical fMRI exams (tbfMRI and rsfMRI) were included in this Institutional Review Board (IRB)-approved study. Each patient displayed decreased/absent tbfMRI activation in the primary ipsilesional sensorimotor cortex in the absence of corresponding motor deficit or suboptimal task performance, consistent with NVU. Z-score maps for motor tasks were obtained from the general linear model (GLM) analysis (reflecting motor activation vs. rest). KCC-ReHo and Cohe-ReHo maps were calculated from rsfMRI data. Precentral and postcentral gyri in contralesional (CL) and ipsilesional (IL) hemispheres were parcellated using an automated anatomical labeling (AAL) template for each patient. Similar region of interest (ROI) analysis was performed on tbfMRI, KCC-ReHo, and Cohe-ReHo maps to allow direct comparison of results. Voxel values in CL and IL ROIs of each map were divided by the corresponding global mean of KCC-ReHo and Cohe-ReHo in bihemispheric cortical brain tissue. Group analysis revealed significantly decreased IL mean KCC-ReHo (p = 0.02) and Cohe-ReHo (p = 0.04) metrics compared with respective values in the CL ROIs, consistent with similar findings of significantly decreased ipsilesional BOLD signal for tbfMRI (p = 0.0005). Ipsilesional abnormalities in ReHo derived from rsfMRI may serve as potential indicators of NVU in patients with brain tumors and other resectable brain lesions; as such, ReHo findings may complement findings on tbfMRI used for presurgical planning.
Integration and Segregation of Default Mode Network Resting-State Functional Connectivity in Transition-Age Males with High-Functioning Autism Spectrum Disorder: A Proof-of-Concept Study

The aim of this study is to assess the resting-state functional connectivity (RsFc) profile of the default mode network (DMN) in transition-age males with autism spectrum disorder (ASD). Resting-state blood oxygen level-dependent functional magnetic resonance imaging data were acquired from adolescent and young adult males with high-functioning ASD (n = 15) and from age-, sex-, and intelligence quotient-matched healthy controls (HCs; n = 16). The DMN was examined by assessing the positive and negative RsFc correlations of an average of the literature-based conceptualized major DMN nodes (medial prefrontal cortex [mPFC], posterior cingulate cortex, bilateral angular, and inferior temporal gyrus regions). RsFc data analysis was performed using a seed-driven approach. ASD was characterized by an altered pattern of RsFc in the DMN. The ASD group exhibited a weaker pattern of intra- and extra-DMN-positive and -negative RsFc correlations, respectively. In ASD, the strength of intra-DMN coupling was significantly reduced with the mPFC and the bilateral angular gyrus regions. In addition, the polarity of the extra-DMN correlation with the right hemispheric task-positive regions of fusiform gyrus and supramarginal gyrus was reversed from typically negative to positive in the ASD group. A wide variability was observed in the presentation of the RsFc profile of the DMN in both HC and ASD groups that revealed a distinct pattern of subgrouping using pattern recognition analyses. These findings imply that the functional architecture profile of the DMN is altered in ASD with weaker than expected integration and segregation of DMN RsFc. Future studies with larger sample sizes are warranted.
Lateral soft‐tissue structures contribute to cruciate‐retaining total knee arthroplasty stability

Little information is available to surgeons regarding how the lateral structures prevent instability in the replaced knee. The aim of this study was to quantify the lateral soft‐tissue contributions to stability following cruciate‐retaining total knee arthroplasty (CR TKA). Nine cadaveric knees were tested in a robotic system at full extension, 30°, 60°, and 90° flexion angles. In both native and CR implanted states, ±90 N anterior–posterior force, ±8 Nm varus–valgus, and ±5 Nm internal–external torque were applied. The anterolateral structures (ALS, including the iliotibial band), the lateral collateral ligament (LCL), the popliteus tendon complex (Pop T), and the posterior cruciate ligament (PCL) were transected and their relative contributions to stabilizing the applied loads were quantified. The LCL was found to be the primary restraint to varus laxity (an average 56% across all flexion angles), and was significant in internal–external rotational stability (28% and 26%, respectively) and anterior drawer (16%). The ALS restrained 25% of internal rotation, while the PCL was significant in posterior drawer only at 60° and 90° flexion. The Pop T was not found to be significant in any tests. Therefore, the LCL was confirmed as the major lateral structure in CR TKA stability throughout the arc of flexion and deficiency could present a complex rotational laxity that cannot be overcome by the other passive lateral structures or the PCL. © 2016 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 35:1902–1909, 2017.
Anti-TNF-Alpha Therapy for Concomitant Behçet's Disease and Ankylosing Spondylitis

A 31-year-old male patient presented at our outpatient clinic with an increase in lumbar and back pain, bilateral pain of the knees with swelling of the left knee, and rashes on both the upper and lower extremities. At the age of 21, while the patient was performing compulsory military service, he complained of lumbar and rare hip pains as well as morning stiffness that lasted for about 30 minutes, and ankylosing spondylitis (AS) was diagnosed. At 24 years of age, the patient experienced swelling of both knees along with difficulty walking and was treated with sulfasalazine and non-steroidal anti-inflammatory drugs (NSAIDs). This treatment regimen was stopped when the patient reached 28 years of age, at which point etanercept was started to alleviate the increased lumbar and back pain and the development of arthritis in both knees. He continued receiving etanercept for two years and, as his condition improved, the patient decided to end the treatment on his own. He has been taking NSAIDs as required for the past seven months.
Atlas of Craniomaxillofacial Surgery

The fear that an atlas will be used by the occasional surgeon is well founded and addressed by the authors in the preface with a pointed quote from Dr Paul Tessier, "that craniofacial surgery should be performed only if it is the main interest of that surgeon and he has the support facilities of a major pediatric hospital to provide safety and care in planning. " I completely agree with this statement, and if one keeps it firmly in mind, this atlas should be a positive influence to achieve greater finesse and safety in the performance of these procedures. If, on the other hand, this atlas is used as a shortcut to learning this complicated field of surgery then it will prove to be a hazardous addition to the field of medical literature. Although this is a multiauthored book, the chapters are fairly uniform in style and quality. One major disappointment
Measurement of diet in a large national survey: comparison of computerized and manual coding of records in household measures

A diary method using household measures was employed to obtain dietary records in a large national prospective survey and a computer program, DIDO (Diet In Data Out), was designed for direct entry of the diaries. The accuracy of this computerized coding system was examined alongside that of the manual coding used for a similar diary in a previous wave, 7 years earlier, of the same survey. Accuracy was assessed by analysis of the errors in the coded and checked records by stringent re-checking of nominal 2% random subsamples of the diet diaries coded by each method. The mean time to code and check each of the 2086 7-day records in the whole survey using DIDO was 58 minutes (SD 30) compared with reported results of 1–4 hours for manual methods. The mean error rate of computerized coding and checking with DIDO was 2.3% (SD 2.1; range 0–8.9) per diary in the subsample. Correcting these mistakes made insignificant changes to the calculated mean energy and nutrient intakes for the subsample. The percentage of individuals changing to an adjacent third of nutrient distribution after correcting unambiguous errors ranged from none (for alcohol) to 11% (for carbohydrate and calcium intake). The mean error rate on a similar subsample of diaries from the earlier survey which had been coded manually was significantly higher at 5.9% (SD 4.1; range 0–17) per diary. Emphasis is laid on the importance, in coding, of dealing with ambiguities in the subjects' records, since this can affect the accuracy and the precision of the nutrient results obtained. We conclude that the DIDO coding method has the advantages of greater accuracy, speed, consistency and efficient data handling, and affords greater data accessibility for checking, compared with manual systems.
Screening for Prostate Cancer: State of the Art

The prostate gland is the male enigma of the aging process, becoming frequently afflicted with benign obstructive hyperplasia, as well as neoplastic disease. Carcinoma of the prostate is equivalent to colon carcinoma as the second leading cause of can cer deaths in males in the United States, 1 and the death rate continues to rise. 2 Prostatic carcinoma is a slow-growing tumor at its onset
Fasting heat production of Saanen and Anglo Nubian goats measured using open‐circuit facemask respirometry

This study aimed to establish the heat production (HP) of Saanen and Anglo Nubian goats at absorptive (feeding) and at post-absorptive (fasting) statuses to determine the adequate period of fasting required for the measurement of basal metabolism. Gas exchange was recorded via open-circuit facemask respirometry. Six non-lactating and non-pregnant goats of each breed, Saanen (49.2 ± 3.2 kg of body weight, BW) and Anglo Nubian (64.0 ± 3.0 kg BW), were placed in individual pens with ad libitum access to the same total mixed ration. After a 3-day feeding period, the animals were subjected to fasting (no feed), and the gas exchange measurement was performed for 30 min at 0, 12, 20, 36, 44, 60 and 68 h after fasting. The daily HP of the Saanen and Anglo Nubian goats averaged 557.4 ± 38.7 and 357.1 ± 35.3 kJ/kg0.75 BW day respectively. During fasting, the methane production decreased exponentially in both breeds, and the critical time when methane production was statistically equal to zero was at 31 h of fasting for the Saanen goats and at 40 h for the Anglo Nubian goats. The daily HP and respiratory exchange rate during fasting decreased up to 60 h. Taken together, our results suggest that the ideal period to measure fasting heat production (FHP) for goats fed at maintenance levels should be between 40 h and 60 h of fasting. Consequently, the daily FHP, after 60 h of fasting, of Saanen and Anglo Nubian goats was 183.3 ± 16.3 and 211.1 ± 11.5 kJ/kg0.75 BW day respectively. The results presented herein are relevant for future studies of energy metabolism in goats.
Alterations in structural macromolecules and chondrocyte deformations in lapine retropatellar cartilage 9 weeks after anterior cruciate ligament transection

The structural integrity and mechanical environment of the articular cartilage matrix directly affect chondrocyte deformations. Rabbit models of early osteoarthritis at 9 weeks following anterior cruciate ligament transection (ACLT) have been shown to alter the deformation behavior of superficial zone chondrocytes in mechanically loaded articular cartilage. However, it is not fully understood whether these changes in cell mechanics are caused by changes in structural macromolecules in the extracellular matrix. Therefore, the purpose of this study was to characterize the proteoglycan content, collagen content, and collagen orientation at 9 weeks post ACLT using microscopic techniques, and relate these changes to the altered cell mechanics observed upon mechanical loading of cartilage. At 9 weeks following ACLT, collagen orientation was significantly (p < 0.05) altered and proteoglycan content was significantly (p < 0.05) reduced in the superficial zone cartilage matrix. These structural changes either in the extracellular or pericellular matrix (ECM and PCM) were also correlated significantly (p < 0.05) with chondrocyte width and height changes, thereby suggesting that chondrocyte deformation response to mechanical compression in early OA changes primarily because of alterations in matrix structure. However, compared to the normal group, proteoglycan content in the PCM from the ACLT group decreased less than that in the surrounding ECM. Therefore, PCM could play a key role to protect excessive chondrocyte deformations in the ACLT group. © 2017 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 36:342–350, 2018.