Miracle-dz/UniFAR-FTUs huggingface dataset:
Partial Protection From Lupus-Like Disease by B-Cell Specific Type I Interferon Receptor Deficiency

Systemic lupus erythematosus (SLE) is an autoimmune disease that can present with many different permutations of symptom presentation. A large subset of SLE patients have been shown to present with elevated interferon stimulated gene (ISG) expression, and Type I IFNs (IFNαβ) have been shown to drive disease in murine models through global IFNα Receptor (IFNAR) knockouts. However, the disease contribution of distinct immune cell subsets in response to constitutively increased levels of IFNαβ is not fully understood. We utilized a B-cell specific IFNAR knockout (BΔIFNAR) on the B6.Nba2 spontaneous-lupus background to determine the contribution of IFNαβ stimulated B cells in disease. We found that IFNαβ signaling in B cells is driving increased splenomegaly, increased populations of activated B cells, and increased populations of germinal center (GC) B cells, memory B cells, and plasma blasts/cells, but did not affect the development of glomerulonephritis and immune-complex deposition. IFNAR expression by B cells also drove production of anti-chromatin IgG, and anti-dsDNA and -nRNP IgG and IgG2C auto-antibody levels, as well as increased Bcl2 expression, affecting GC B cell survival in B6.Nba2 mice.
Overview of Biologically Active Nucleoside Phosphonates

The use of the phosphonate motif featuring a carbon-phosphorous bond as bioisosteric replacement of the labile P–O bond is widely recognized as an attractive structural concept in different areas of medicinal chemistry, since it addresses the very fundamental principles of enzymatic stability and minimized metabolic activation. This review discusses the most influential successes in drug design with special emphasis on nucleoside phosphonates and their prodrugs as antiviral and cancer treatment agents. A description of structurally related analogs able to interfere with the transmission of other infectious diseases caused by pathogens like bacteria and parasites will then follow. Finally, molecules acting as agonists/antagonists of P2X and P2Y receptors along with nucleotidase inhibitors will also be covered. This review aims to guide readers through the fundamentals of nucleoside phosphonate therapeutics in order to inspire the future design of molecules to target infections that are refractory to currently available therapeutic options.
Mara yurriku: Western Desert sign languages

We acknowledge and thank the Ngaanyatjarra community and Ngaanyatjarra Council (Aboriginal Corporation) for supporting this research. We thank Norma Giles, Tjawina Porter, Nancy Jackson and Sheila Giles. Research by Elizabeth Marrkilyi Ellis has been supported by ELDP (Endangered Languages Documentation Programme) (SG0187) and an ARC Discovery Indigenous Award (IN150100018). Jennifer Green was supported by ARC (Australian Research Council) Fellowships (DP110102767 and DE160100873) and Inge Kral by an ARC DECRA Award (DE120100720). In December 2016 Lauren Reed, a native signer of Auslan, joined the research team as an ANU Summer Scholar sponsored by the ARC Centre of Excellence for the Dynamics of Language (CoEDL) (CE140100041). She annotated the corpus and conducted archival research. We acknowledge CoEDL, and the School of Literature, Languages and Linguistics at the Australian National University, for their support
Seagrass Recovery Following Marine Heat Wave Influences Sediment Carbon Stocks

Worldwide, seagrass meadows accumulate significant stocks of organic carbon (C), known as “blue” carbon, which can remain buried for decades to centuries. However, when seagrass meadows are disturbed, these C stocks may be remineralized, leading to significant CO2 emissions. Increasing ocean temperatures, and increasing frequency and severity of heat waves, threaten seagrass meadows and their sediment blue C. To date, no study has directly measured the impact of seagrass declines from high temperatures on sediment C stocks. Here, we use a long-term record of sediment C stocks from a 7-km2, restored eelgrass (Zostera marina) meadow to show that seagrass dieback following a single marine heat wave (MHW) led to significant losses of sediment C. Patterns of sediment C loss and re-accumulation lagged patterns of seagrass recovery. Sediment C losses were concentrated within the central area of the meadow, where sites experienced extreme shoot density declines of 90% during the MHW and net losses of 20% of sediment C over the following 3 years. However, this effect was not uniform; outer meadow sites showed little evidence of shoot declines during the MHW and had net increases of 60% of sediment C over the following 3 years. Overall, sites with higher seagrass recovery maintained 1.7x as much C compared to sites with lower recovery. Our study demonstrates that while seagrass blue C is vulnerable to MHWs, localization of seagrass loss can prevent meadow-wide C losses. Long-term (decadal and beyond) stability of seagrass blue C depends on seagrass resilience to short-term disturbance events.
Applications and Prospects of Microfluidic Chips in Orthopaedic Diseases

With the advent of an ageing society, bone-related diseases such as osteoporosis have become a major human health issue, and osteolytic lesions caused by cancer bone metastasis have always had a poor prognosis. Researchers have studied the pathogenesis of these orthopaedic diseases to obtain efficacious treatments. Microfluidic chip technology is a popular technology developed in recent years. This technology can build an experimental platform for a bionic in vivo microenvironment in vitro, which has been favored by an increasing number of researchers. In this review, we will take osteoporosis and cancer bone metastasis as examples to illustrate the pathogenesis, introduce the latest progress in the research of orthopaedics-related diseases of the microfluidic model, and describe the current approaches and their limitations.
Sensitive Time-Resolved Fluorescence Immunoassay for Quantitative Determination of Oxyfluorfen in Food and Environmental Samples

The direct and indirect competition time-resolved fluorescence immunoassays (dc-TRFIA, ic-TRFIA) were established by combining the autofluorescence properties of lanthanide europium (Eu) with the monoclonal antibody of oxyfluorfen. The purified Eu antibody was optimized and the conditions such as the working concentration of the Eu antibody, monoclonal antibody, and working buffer were optimized. In the optimal condition, the IC50 of dc-TRFIA was 10.27 ng/mL, the lowest detection limit IC10 was 0.071 ng/mL, the detection range (IC10-IC90) was 0.071–1074.3 ng/mL, and the detection range (IC10-IC90) and IC50 of ic-TRFIA were 0.024–504.6 and 2.76 ng/mL, respectively. The comparison showed that the sensitivity and detection limit of ic-TRFIA were superior to dc-TRFIA. The cross reaction (CR) tests showed that the CR with other oxyfluorfen structure analogs was <0.02%, except that there was a certain CR with the benzofluorfen (CR = 11.58) and the bifenox (CR = 8.23%). The average recoveries of ic-TRFIA were 74.6–108.3%, and the RSDs were between 2.1 and 10.9%, in the addition recovery test with five substrates. The results of the correlation test with the real samples of GC-ECD showed that they were highly correlated (y = 0.975x – 0.4446, R2 = 0.9901), which proved that the TRFIA method established in this study had high reliability and accuracy and could be used in environment and agricultural products for rapid detection of oxyfluorfen residues.
Self-Oriented Empathy and Compassion Fatigue: The Serial Mediation of Dispositional Mindfulness and Counselor’s Self-Efficacy

This study aimed to explore the association between self-oriented empathy and compassion fatigue, and examine the potential mediating roles of dispositional mindfulness and the counselor’s self-efficacy. A total of 712 hotline psychological counselors were recruited from the Mental Health Service Platform at Central China Normal University, Ministry of Education during the outbreak of Corona Virus Disease 2019, then were asked to complete the questionnaires measuring self-oriented empathy, compassion fatigue, dispositional mindfulness, and counselor’s self-efficacy. Structural equation modeling was utilized to analyze the possible associations and explore potential mediations. In addition to reporting confidence intervals (CI), we employed a new method named model-based constrained optimization procedure to test hypotheses of indirect effects. Results showed that self-oriented empathy was positively associated with compassion fatigue. Dispositional mindfulness and counselor’s self-efficacy independently and serially mediated the associations between self-oriented empathy and compassion fatigue. The findings of this study confirmed and complemented the etiological and the multi-factor model of compassion fatigue. Moreover, the results indicate that it is useful and necessary to add some training for increasing counselor’s self-efficacy in mindfulness-based interventions in order to decrease compassion fatigue.
Nanowire Waveguides and Lasers: Advances and Opportunities in Photonic Circuits

Due to their single-crystalline structures, comparatively large aspect ratios, tight optical confinement and smooth surfaces, nanowires have increasingly attracted research interests for both fundamental studies and technological applications in on-chip photonic devices. This class of nanostructures typically have cross-sections of 2~200 nm and lengths upwards of several micrometers, allowing for the bridging of the nanoscopic and macroscopic world. In particular, the lasing behaviors can be established from a nanowire resonator with positive feedback via end-facet reflection, making the nanowire a promising candidate in the next generation of optoelectronics. Consequently, versatile nanowire-based devices ranging from nanoscale coherent lasers, optical sensors, waveguides, optical switching, and photonic networks have been proposed and experimentally demonstrated in the past decade. In this article, significant progresses in the nanowire fabrication, lasers, circuits, and devices are reviewed. First, we focus on the achievements of nanowire synthesis and introduce the basics of nanowire optics. Following the cavity configurations and mode categories, then the different light sources consisting of nanowires are presented. Next, we review the recent progress and current status of functional nanowire devices. Finally, we offer our perspective of nanowires regarding their challenges and future opportunities in photonic circuits.
Frequency-Specific Changes in the Fractional Amplitude of the Low-Frequency Fluctuations in the Default Mode Network in Medication-Free Patients With Bipolar II Depression: A Longitudinal Functional MRI Study

Objective: This study aimed to examine the treatment-related changes of the fractional amplitude of low-frequency fluctuations (fALFF) in the default mode network (DMN) across different bands after the medication-free patients with bipolar II depression received a 16-week treatment of escitalopram and lithium. Methods: A total of 23 medication-free patients with bipolar II depression and 29 healthy controls (HCs) were recruited. We evaluated the fALFF values of slow 4 (0.027–0.073 Hz) band and slow 5 (0.01–0.027 Hz) band of the patients and compared the results with those of the 29 HCs at baseline. After 16-week treatment of escitalopram with lithium, the slow 4 and slow 5 fALFF values of the patients were assessed and compared with the baselines of patients and HCs. The depressive symptoms of bipolar II depression in patients were assessed with a 17-item Hamilton Depression Rating Scale (HDRS) before and after treatment. Results: Treatment-related effects showed increased slow 5 fALFF in cluster D (bilateral medial superior frontal gyrus, bilateral superior frontal gyrus, right middle frontal gyrus, and bilateral anterior cingulate), cluster E (bilateral precuneus/posterior cingulate, left cuneus), and cluster F (left angular, left middle temporal gyrus, left superior temporal gyrus, and left supramarginal gyrus) in comparison with the baseline of the patients. Moreover, a positive association was found between the increase in slow 5 fALFF values (follow-up value minus the baseline values) in cluster D and the decrease in HDRS scores (baseline HDRS scores minus follow-up HDRS scores) at follow-up, and the same association between the increase in slow 5 fALFF values and the decrease in HDRS scores was found in cluster E. Conclusions: The study reveals that the hypoactivity of slow 5 fALFF in the DMN is related to depression symptoms and might be corrected by the administration of escitalopram with lithium, implying that slow 5 fALFF of the DMN plays a key role in bipolar depression.
Experimental Methodology for Analysing Macromolecular Interactions in the Context of Marine Bacterial Adhesion to Stainless Steel

Abstract In the frame of a long-term study of biofilm formation in the marine environment, protein-coated amine latex microbeads were used as a simplified bacterial model, in order to elucidate the role of surface protein on adhesion to 316 L stainless steel. Bovine serum albumin (BSA), chosen as the model protein, was covalently immobilized to the amine latex beads using glutaraldehyde as cross-linker. The adhesion of BSA-coated latex beads to stainless steel was then examined under a well-controlled physico-chemical environment, using a shear stress flow chamber. The shear-induced detachment of beads was analysed by testing three different microbeads/stainless steel systems: bare latex beads, activated latex beads with poly(glutaral-dehyde) and BSA-coated latex beads in adhesive contact with stainless steel. The suspending medium used for detachment was representative of seawater in terms of pH and ionic strength. Adhesion was quantified through two complementary parameters: the wall shear stress threshold needed to cause 2% bead detachment ( τ W2% ) and the wall shear stress required to remove 50% of the initially adhered beads ( τ W50% ). Zeta potential measurements, paired with protein quantification, indicated that the coating density was weak. Nevertheless, the BSA-coated latex beads promoted an increased adhesion compared to bare beads, which was demonstrated by higher τ W2% and τ W50% values ( τ W2% = 15.9 ± 8.1 Pa and 39.4 ± 10.7 Pa; τ W50% = 41.4 ± 7.9 and 73.5 ± 14.8 Pa for bare and BSA-coated beads, respectively). These results confirmed the role of surface proteins on adhesion to stainless steel. The shear stress flow chamber and the associated method for bead coating were demonstrated to be a relevant approach to analyse nano-scale molecular interactions between biological and physical surfaces.
Visual, Verbal and Everyday Memory 2 Years After Bariatric Surgery: Poorer Memory Performance at 1-Year Follow-Up

Severe obesity has been associated with reduced performance on tests of verbal memory in bariatric surgery candidates. There is also some evidence that bariatric surgery leads to improved verbal memory, yet these findings need further elucidation. Little is known regarding postoperative memory changes in the visual domain and how patients subjectively experience their everyday memory after surgery. The aim of the current study was to repeat and extend prior findings on postoperative memory by investigating visual, verbal, and self-reported everyday memory following surgery, and to examine whether weight loss and somatic comorbidity predict memory performance. The study was a prospective, observational study in which participants (n = 48) underwent cognitive testing at baseline, 1 and 2 years after bariatric surgery. Repeated measures analyses of variance revealed significantly poorer visual and verbal memory performance at the 1-year follow-up, with performance subsequently returning to baseline levels after 2 years. Verbal learning and self-reported everyday memory did not show significant postoperative changes. Memory performance at 1 year was not significantly predicted by weight loss, changes in C-reactive protein levels or postoperative somatic comorbidity (Type 2 diabetes, sleep apnea, and hypertension). The study demonstrated poorer visual and verbal memory performance at 1-year follow-up that returned to baseline levels after 2 years. These findings are in contrast to most previous studies and require further replication, however, the results indicate that postoperative memory improvements following bariatric surgery are not universal. Findings suggest that treatment providers should also be aware of patients potentially having poorer memory at 1 year following surgery.
The Impact of Functional Overreaching on Post-exercise Parasympathetic Reactivation in Runners

While post-exercise heart rate (HR) variability (HRV) has been shown to increase in response to training leading to improvements in performance, the effect of training leading to decrements in performance (i.e., overreaching) on this parameter has been largely ignored. This study evaluated the effect of heavy training leading to performance decrements on sub-maximal post-exercise HRV. Running performance [5 km treadmill time-trial (5TTT)], post-exercise HRV [root-mean-square difference of successive normal R-R intervals (RMSSD)] and measures of subjective training tolerance (Daily Analysis of Life Demands for Athletes “worse than normal” scores) were assessed in 11 male runners following 1 week of light training (LT), 2 weeks of heavy training (HT) and a 10 day taper (T). Post-exercise RMSSD was assessed following 5 min of running exercise at an individualised speed eliciting 85% of peak HR. Time to complete 5TTT likely increased following HT (ES = 0.14 ± 0.03; p < 0.001), and then almost certainly decreased following T (ES = −0.30 ± 0.07; p < 0.001). Subjective training tolerance worsened after HT (ES = −2.54 ± 0.62; p = 0.001) and improved after T (ES = 2.16 ± 0.64; p = 0.004). In comparison to LT, post-exercise RMSSD likely increased at HT (ES = 0.65 ± 0.55; p = 0.06), and likely decreased at T (ES = −0.69 ± 0.45; p = 0.02). A moderate within-subject correlation was found between 5TTT and post-exercise RMSSD (r = 0.47 ± 0.36; p = 0.03). Increased post-exercise RMSSD following HT demonstrated heightened post-exercise parasympathetic modulation in functionally overreached athletes. Heightened post-exercise RMSSD in this context appears paradoxical given this parameter also increases in response to improvements in performance. Thus, additional measures such as subjective training tolerance are required to interpret changes in post-exercise RMSSD.
Fostering Self-Management of Everyday Memory in Older Adults: A New Intervention Approach

Traditional memory strategy training interventions improve older adults’ performance on tests of episodic memory, but have limited transfer to episodic memory tasks, let alone to everyday memory. We argue that an alternative approach is needed to assist older adults to compensate for age-related cognitive declines and to maintain functional capacity in their own natural ecologies. We outline a set of principles regarding how interventions can successfully train older adults to increase successful goal pursuit to reduce risks of everyday memory failures. We argue that training individuals to use metacognitive self-regulatory strategies to proactively manage formulation and pursuit of daily goals can compensate for age-related cognitive changes and increase the likelihood of goal attainment. We then describe an intervention approach that instantiates these principles in a multi-modal intervention that is unique in its three-phase approach: (1) individualized assessment of an individual’s current approaches to self-regulation; (2) training memory strategies, self-management skills, and new habits of mind in a group training context; and (3) a behavioral shaping period in which individuals receive coaching and feedback on their efforts to use trained procedures to improve everyday cognition. A recently completed study conducted an initial test of the intervention, with highly encouraging results. We advocate further efforts to replicate, extend, and fine-tune this type of intervention. The ultimate goal is to be able to deliver the intervention in a way that increases its potential reach, including to subpopulations of older adults at risk for everyday cognitive impairments.
Highly Sensitive and Multiplexed Protein Imaging With Cleavable Fluorescent Tyramide Reveals Human Neuronal Heterogeneity

The ability to comprehensively profile proteins in intact tissues in situ is crucial for our understanding of health and disease. However, the existing methods suffer from low sensitivity and limited sample throughput. To address these issues, here we present a highly sensitive and multiplexed in situ protein analysis approach using cleavable fluorescent tyramide and off-the-shelf antibodies. Compared with the current methods, this approach enhances the detection sensitivity and reduces the imaging time by 1–2 orders of magnitude, and can potentially detect hundreds of proteins in intact tissues at the optical resolution. Applying this approach, we studied protein expression heterogeneity in a population of genetically identical cells, and performed protein expression correlation analysis to identify co-regulated proteins. We also profiled >6,000 neurons in a human formalin-fixed paraffin-embedded (FFPE) hippocampus tissue. By partitioning these neurons into varied cell clusters based on their multiplexed protein expression profiles, we observed different sub-regions of the hippocampus consist of neurons from distinct clusters.
Implicit Detection Observation in Different Features, Exposure Duration, and Delay During Change Blindness

To investigate whether implicit detection occurs uniformly during change blindness with single or combination feature stimuli, and whether implicit detection is affected by exposure duration and delay, two one-shot change detection experiments are designed. The implicit detection effect is measured by comparing the reaction times (RTs) of baseline trials, in which stimulus exhibits no change and participants report “same,” and change blindness trials, in which the stimulus exhibits a change but participants report “same. ” If the RTs of blindness trials are longer than those of baseline trials, implicit detection has occurred. The strength of the implicit detection effect was measured by the difference in RTs between the baseline and change blindness trials, where the larger the difference, the stronger the implicit detection effect. In both Experiments 1 and 2, the results showed that the RTs of change blindness trials were significantly longer than those of baseline trials. Whether under set size 4, 6, or 8, the RTs of the change blindness trials were significantly longer than those in the baseline trials. In Experiment 1, the difference between the baseline trials’ RTs and change blindness trials’ RTs of the single features was significantly larger than that of the combination features. However, in Experiment 2, the difference between the baseline trials’ RTs and the change blindness trials’ RTs of single features was significantly smaller than that of the combination features. In Experiment 1a, when the exposure duration was shorter, the difference between the baseline and change blindness trials’ RTs was smaller. In Experiment 2, when the delay was longer, the difference between the two trials’ RTs was larger. These results suggest that regardless of whether the change occurs in a single or a combination of features and whether there is a long exposure duration or delay, implicit detection occurs uniformly during the change blindness period. Moreover, longer exposure durations and delays strengthen the implicit detection effect. Set sizes had no significant impact on implicit detection.