Miracle-dz/UniFAR-FTUs huggingface dataset:
Regulation of the Mitochondrial BKCa Channel by the Citrus Flavonoid Naringenin as a Potential Means of Preventing Cell Damage

Naringenin, a flavanone obtained from citrus fruits and present in many traditional Chinese herbal medicines, has been shown to have various beneficial effects on cells both in vitro and in vivo. Although the antioxidant activity of naringenin has long been believed to be crucial for its effects on cells, mitochondrial pathways (including mitochondrial ion channels) are emerging as potential targets for the specific pharmacological action of naringenin in cardioprotective strategies. In the present study, we describe interactions between the mitochondrial large-conductance calcium-regulated potassium channel (mitoBKCa channel) and naringenin. Using the patch-clamp method, we showed that 10 µM naringenin activated the mitoBKCa channel present in endothelial cells. In the presence of 30 µM Ca2+, the increase in the mitoBKCa channel probability of opening from approximately 0.25 to 0.50 at −40 mV was observed. In addition, regulation of the mitoBKCa channel by naringenin was dependent on the concentration of calcium ions. To confirm our data, physiological studies on the mitochondria were performed. An increase in oxygen consumption and a decrease in membrane potential was observed after naringenin treatment. In addition, contributions of the mitoBKCa channel to apoptosis and necrosis were investigated. Naringenin protected cells against damage induced by tumor necrosis factor α (TNF-α) in combination with cycloheximide. In this study, we demonstrated that the flavonoid naringenin can activate the mitoBKCa channel present in the inner mitochondrial membrane of endothelial cells. Our studies describing the regulation of the mitoBKCa channel by this natural, plant-derived substance may help to elucidate flavonoid-induced cytoprotective mechanisms.
Cellulose Acetate Incorporating Organically Functionalized CeO2 NPs: Efficient Materials for UV Filtering Applications

One of the major issues faced when constructing various materials incorporating inorganic nanoparticles (NPs) is aggregation leading to loss of their final activity. In our work, cellulose acetate (CA) has been used to serve as matrix for the synthesis of UV-shielding and transparent films containing various amounts (1–5 wt.%) of cerium oxide (CeO2) NPs. In order to attain an improved dispersion and a better connectivity between NPs and the cellulose matrix, the surface of CeO2 NPs have been previously functionalized by the reaction with 3-aminopropyl(diethoxy)methylsilane (APDMS). The uniform dispersion of the NPs in the homogeneous thin films has been evidenced by using Transmission Electron Microscopy (TEM) and Fourier Transformation Infrared Spectroscopy (FTIR) characterization. The investigation of the optical properties for the hybrid films through UV-Vis spectroscopy revealed that the presence of CeO2 NPs in the CA matrix determined the appearance of strong UV absorption bands in the region 312–317 nm, which supports their use as efficient UV absorbers. This study has shown that UV shielding ability of the nanocomposites can be easily tuned by adjusting the numberof inorganic NPs in the CA template.
Estrogen receptor alpha, G‐protein coupled estrogen receptor 1, and aromatase: Developmental, sex, and region‐specific differences across the rat caudate–putamen, nucleus accumbens core and shell

Sex steroid hormones such as 17β‐estradiol (estradiol) regulate neuronal function by binding to estrogen receptors (ERs), including ERα and GPER1, and through differential production via the enzyme aromatase. ERs and aromatase are expressed across the nervous system, including in the striatal brain regions. These regions, comprising the nucleus accumbens core, shell, and caudate–putamen, are instrumental for a wide‐range of functions and disorders that show sex differences in phenotype and/or incidence. Sex‐specific estrogen action is an integral component for generating these sex differences. A distinctive feature of the striatal regions is that in adulthood neurons exclusively express membrane but not nuclear ERs. This long‐standing finding dominates models of estrogen action in striatal regions. However, the developmental etiology of ER and aromatase cellular expression in female and male striatum is unknown. This omission in knowledge is important to address, as developmental stage influences cellular estrogenic mechanisms. Thus, ERα, GPER1, and aromatase cellular immunoreactivity was assessed in perinatal, prepubertal, and adult female and male rats. We tested the hypothesis that ERα, GPER1, and aromatase exhibits sex, region, and age‐specific differences, including nuclear expression. ERα exhibits nuclear expression in all three striatal regions before adulthood and disappears in a region‐ and sex‐specific time‐course. Cellular GPER1 expression decreases during development in a region‐ but not sex‐specific time‐course, resulting in extranuclear expression by adulthood. Somatic aromatase expression presents at prepuberty and increases by adulthood in a region‐ but not sex‐specific time‐course. These data indicate that developmental period exerts critical sex‐specific influences on striatal cellular estrogenic mechanisms.
Aggregative Adherence Fimbriae II of Enteroaggregative Escherichia coli Are Required for Adherence and Barrier Disruption during Infection of Human Colonoids

Symptomatic and asymptomatic infection with the diarrheal pathogen enteroaggregative Escherichia coli (EAEC) is associated with growth faltering in children in developing settings. The mechanism of this association is unknown, emphasizing a need for better understanding of the interactions between EAEC and the human gastrointestinal mucosa. In this study, we investigated the role of the aggregative adherence fimbriae II (AAF/II) in EAEC adherence and pathogenesis using human colonoids and duodenal enteroids. ABSTRACT Symptomatic and asymptomatic infection with the diarrheal pathogen enteroaggregative Escherichia coli (EAEC) is associated with growth faltering in children in developing settings. The mechanism of this association is unknown, emphasizing a need for better understanding of the interactions between EAEC and the human gastrointestinal mucosa. In this study, we investigated the role of the aggregative adherence fimbriae II (AAF/II) in EAEC adherence and pathogenesis using human colonoids and duodenal enteroids. We found that a null mutant in aafA, the major subunit of AAF/II, adhered significantly less than wild-type (WT) EAEC strain 042, and adherence was restored in a complemented strain. Immunofluorescence confocal microscopy of differentiated colonoids, which produce an intact mucus layer comprised of the secreted mucin MUC2, revealed bacteria at the epithelial surface and within the MUC2 layer. The WT strain adhered to the epithelial surface, whereas the aafA deletion strain remained within the MUC2 layer, suggesting that the presence or absence of AAF/II determines both the abundance and location of EAEC adherence. In order to determine the consequences of EAEC adherence on epithelial barrier integrity, colonoid monolayers were exposed to EAEC constructs expressing or lacking aafA. Colonoids infected with WT EAEC had significantly decreased epithelial resistance, an effect that required AAF/II, suggesting that binding of EAEC to the epithelium is necessary to impair barrier function. In summary, we show that production of AAF/II is critical for adherence and barrier disruption in human colonoids, suggesting a role for this virulence factor in EAEC colonization of the gastrointestinal mucosa.
Watershed‐scale climate influences productivity of Chinook salmon populations across southcentral Alaska

The ecosystems supporting Pacific salmon (Oncorhynchus spp.) are changing rapidly as a result of climate change and habitat alteration. Understanding how—and how consistently—salmon populations respond to changes at regional and watershed scales has major implications for fisheries management and habitat conservation. Chinook salmon (O. tshawytscha) populations across Alaska have declined over the past decade, resulting in fisheries closures and prolonged impacts to local communities. These declines are associated with large‐scale climate drivers, but uncertainty remains about the role of local conditions (e.g., precipitation, streamflow, and stream temperature) that vary among the watersheds where salmon spawn and rear. We estimated the effects of these and other environmental indicators on the productivity of 15 Chinook salmon populations in the Cook Inlet basin, southcentral Alaska, using a hierarchical Bayesian stock‐recruitment model. Salmon spawning during 2003–2007 produced 57% fewer recruits than the previous long‐term average, leading to declines in adult returns beginning in 2008. These declines were explained in part by density dependence, with reduced population productivity following years of high spawning abundance. Across all populations, productivity declined with increased precipitation during the fall spawning and early incubation period and increased with above‐average precipitation during juvenile rearing. Above‐average stream temperatures during spawning and rearing had variable effects, with negative relationships in many warmer streams and positive relationships in some colder streams. Productivity was also associated with regional indices of streamflow and ocean conditions, with high variability among populations. The cumulative effects of adverse conditions in freshwater, including high spawning abundance, heavy fall rains, and hot, dry summers may have contributed to the recent population declines across the region. Identifying both coherent and differential responses to environmental change underscores the importance of targeted, watershed‐specific monitoring and conservation efforts for maintaining resilient salmon runs in a warming world.
Arabidopsis WRKY28 transcription factor is required for resistance to necrotrophic pathogen, Botrytis cinerea

Arabidopsis thaliana WRKY28, which is strongly induced by H2O2 stress, is one of the group II WRKY proteins and responds to Botrytis cinerea. In this study, we successfully generated up and downregulating WRKY28 transgenic A. thaliana lines. Our investigation into the action of WRKY28 demonstrated that the down-regulation of WRKY28 resulted in susceptible of plants. The enhanced susceptible in down-regulating plants was associated with the suppression of jasmonate (JA) and ethylene (ET) regulated PDF1.2 gene by the necrotrophic fungal pathogen B. cinerea. In contrast, disease resistance and the expressions of JA and ET regulated PDF1.2 genes are slightly enhanced in WRKY28 over-expressing plants. Thus, pathogen-induced WRKY28 transcription factor plays a key role in JA and ET mediated defense responses to B. cinerea. These results provide a genetic evidence of WRKY28 in plant defense.
Cell type- and stage-specific expression of Otx2 is regulated by multiple transcription factors and cis-regulatory modules in the retina

ABSTRACT Transcription factors (TFs) are often used repeatedly during development and homeostasis to control distinct processes in the same and/or different cellular contexts. Considering the limited number of TFs in the genome and the tremendous number of events that need to be regulated, re-use of TFs is necessary. We analyzed how the expression of the homeobox TF, orthodenticle homeobox 2 (Otx2), is regulated in a cell type- and stage-specific manner during development in the mouse retina. We identified seven Otx2 cis-regulatory modules (CRMs), among which the O5, O7 and O9 CRMs mark three distinct cellular contexts of Otx2 expression. We discovered that Otx2, Crx and Sox2, which are well-known TFs regulating retinal development, bind to and activate the O5, O7 or O9 CRMs, respectively. The chromatin status of these three CRMs was found to be distinct in vivo in different retinal cell types and at different stages. We conclude that retinal cells use a cohort of TFs with different expression patterns and multiple CRMs with different chromatin configurations to regulate the expression of Otx2 precisely. Summary: Retinal cells use transcription factors with different expression patterns and cis-regulatory modules with different chromatin configurations to regulate the cell type- and stage-specific expression of Otx2 precisely.
Contrasting Genetic Differentiation of a Poorly Dispersing Lizard in Connected and Fragmented Scrub Habitats

Abstract Sceloporus woodi (Florida Scrub Lizard) offers an excellent opportunity to contrast connected and fragmented habitats to determine how historical patterns influence genetic differentiation in fragmented habitats. We screened six microsatellite loci in S. woodi (N = 154) from seven sites at Archbold Biological Station, a large, connected scrub habitat where there is a potential for gene flow in spite of the low dispersal in S. woodi. We compared genetic differentiation of S. woodi in the connected scrub to that previously detected among a cluster of naturally fragmented scrub patches. We also performed simulations to determine how fragmentation would alter genetic differentiation in the connected scrub. Sceloporus woodi had modest, fine-scale genetic differentiation that followed isolation-by-distance and habitat structure in the connected scrub. There was less differentiation in the connected scrub than observed among the naturally fragmented scrub patches. Spatially explicit Bayesian clustering with TESS and BAPS identified two groups among the seven sites and θST estimates revealed significant differentiation among sites (θST = 0.052; P < 0.001). A positive relationship occurred between geographic distance and genetic differentiation (r = 0.226; P = 0.04). Limited dispersal likely has generated isolation-by-distance with a gradient of genetic differentiation among sites. When the geographic relationship among sites was considered, simulations indicated that fragmentation would tend to increase genetic differentiation immediately after fragmentation, yet fragmentation reduced genetic differentiation in some cases. Thus, historical patterns of genetic differentiation may play an important role in determining the population structure of a species after habitat fragmentation.
Mild Cognitive Impairment Subtypes and Type 2 Diabetes in Elderly Subjects

Background: Type 2 diabetes (T2D) is correlated to amnestic mild cognitive impairment (aMCI) and to non-amnestic mild cognitive impairment (naMCI). This study evaluated whether the T2D variable characterizes a peculiar cognitive profile in elderly patients. Moreover, it explores the association between glycated hemoglobin levels (HbA1c), T2D duration, insulin and oral hypoglycemic agent treatment, and cognition in elderly diabetic patients. Methods: Detailed neuropsychological battery was used to diagnose MCI subtypes. A total of 39 MCI subjects with T2D (T2D-MCI) and 37 MCI subjects without T2D (ND-MCI), matched for age, educational level, and Mini-Mental State Examination score, were included. Results: ND-MCI performed worse in memory and language domains than T2D-MCI. The amnestic subtype is more frequent among ND-MCI and non-amnestic subtype in T2D-MCI. In T2D-MCI, high HbA1c levels correlate with episodic memory (immediate recall) and T2D duration. Some indexes of episodic memory (immediate recall), attention, and visual-spatial ability correlate with insulin treatment. Conclusions: An association between T2D and non-amnestic MCI is suggested. In the T2D-MCI group, significant associations between insulin treatment and memory (immediate recall), complex figure copy, and attention were found.
Trends in Compressive Sensing for EEG Signal Processing Applications

The tremendous progress of big data acquisition and processing in the field of neural engineering has enabled a better understanding of the patient’s brain disorders with their neural rehabilitation, restoration, detection, and diagnosis. An integration of compressive sensing (CS) and neural engineering emerges as a new research area, aiming to deal with a large volume of neurological data for fast speed, long-term, and energy-saving purposes. Furthermore, electroencephalography (EEG) signals for brain–computer interfaces (BCIs) have shown to be very promising, with diverse neuroscience applications. In this review, we focused on EEG-based approaches which have benefited from CS in achieving fast and energy-saving solutions. In particular, we examine the current practices, scientific opportunities, and challenges of CS in the growing field of BCIs. We emphasized on summarizing major CS reconstruction algorithms, the sparse basis, and the measurement matrix used in CS to process the EEG signal. This literature review suggests that the selection of a suitable reconstruction algorithm, sparse basis, and measurement matrix can help to improve the performance of current CS-based EEG studies. In this paper, we also aim at providing an overview of the reconstruction free CS approach and the related literature in the field. Finally, we discuss the opportunities and challenges that arise from pushing the integration of the CS framework for BCI applications.
A Potent Lignan from Prunes Alleviates Inflammation and Oxidative Stress in Lithium/Pilocarpine-Induced Epileptic Seizures in Rats

Prunus domestica L. is an edible plant that is included in the family Rosaceae and proven to possess potent anti-inflammatory and anxiolytic activity. Pinoresinol-4-O-β-d-glucopyranoside (PGu) was isolated from Prunus domestica methanol extract and its structure was determined using 1-D and 2-D NMR (one- and two-dimensional nuclear magnetic resonance). PGu was evaluated for its anticonvulsant activity using lithium/pilocarpine-induced epileptic seizures in rats. PGu displayed a notable antioxidant and anti-inflammatory activity in vitro. It ameliorates the seizures triggered by pilocarpine in a dose-dependent manner, manifested by retarding seizure onset, reducing the number of rats developing seizures, and enhancing the survival of animals after seizure exposure. PGu reduced MDA (malondialdehyde) level by 24.2% in addition to increasing catalase activity by 44.4% at 50 mg/kg b.w compared to pilocarpine-treated animals. This was confirmed by histopathological examination in which pretreatment with PGu (50 mg/kg b.w.) attenuated neurodegeneration and seizures with no histopathological alteration in neurons of the cerebral cortex. In the immunohistochemical examination, it significantly declined the elevated Cyclooxygenase-2 (COX-2) by 40% and decreased Inducible nitric oxide synthase (iNOS) expression by 18% as expressed by the optical density. PGu revealed a pronounced fitting within the active site of 5-LOX (lipoxygenase-5) with a free binding energy (∆G) equals to −65.05 kcal/mol. PGu could perfectly serve as a potent lead drug for the relief of epileptic seizures, which appeals to many patients owing to its natural origin.
How Is Use of Electronic Cigarettes Related to Conventional Cigarette Use? A Qualitative Study among Korean American Young Adults

ABSTRACT Given the growing popularity of e-cigarettes in the United States, there is a need to understand the relationship between conventional and electronic cigarette use among Korean American young adults. Thus, this study aimed to explore Korean American young adults’ experience of electronic cigarettes and its association with use of conventional cigarettes. This study employed an exploratory qualitative design. Individual interviews were conducted with 15 Korean American young adults aged between 18 and 25 years who reported having smoked at least one conventional cigarette per day for the past 6 months. Interview data were subjected to thematic analysis in order to gain an in-depth understanding of the interconnection between e-cigarette and conventional cigarette use. Data analysis revealed three themes involving reasons for buying, using, and stopping use of e-cigarettes, each of which had several sub-themes. Study results suggest that experience of e-cigarettes was related to conventional cigarette use. Thus, the experience of e-cigarettes as well as conventional cigarettes should be considered in designing smoking cessation interventions for Korean American young adults.
METHODOLOGY FOR DESIGNING SUPERVISORY SYSTEMS: CASE STUDY OF A COUNTING SYSTEM OF NATURAL GAS

After a presentation of the functionality of a supervisory system for complex processes, we present the concepts of SCADA (supervisory control and data acquisition) systems. A methodology for designing supervisory production systems has been presented. This methodology is based on a functional analysis technique SADT (Structured Analysis and Design Technique) and has been applied on an example of a SCADA system of a thermal power plant (TPP). This technique allows a functional description of a SCADA system. An application of supervision of a counting system of the natural gas of a TPP is presented. Key-words: Supervisory systems; SCADA; Functional Analysis; Thermal power plan; Natural gas.
Retention efficiencies of the coral reef sponges Aplysina lacunosa, Callyspongia vaginalis and Niphates digitalis determined by Coulter counter and plate culture analysis

Abstract Sponges are the dominant organisms on many coral reefs and through feeding they may greatly reduce the concentration of suspended food particles. Retention efficiencies of the tubular sponges Aplysina lacunosa, Callyspongia vaginalis and Niphates digitalis were examined on a coral reef located in the Florida Keys. Replicate ambient and exhalant water samples were collected in situ from individuals of each species and analysed using two methods. Retention efficiencies of suspended particles (0.75–18 µm) examined using Coulter counter analysis were similar among the three sponge species, averaging 86%. For all sponges, particle retention decreased as particle size increased from 0.7 to 18 µm. Water samples plated on to Marine Agar produced 54 microbial types. Retention efficiencies of culturable microbes were similar among the three species, averaging 82%. This study suggests that the coral reef sponges Aplysina lacunosa, Callyspongia vaginalis and Niphates digitalis play an important role in the transfer of energy between the pelagic and benthic environments.
Preventive Effects of Different Aerobic Exercise Intensities on the Decline of Cognitive Function in High-Fat Diet-Induced Obese Growing Mice

Background and Objectives: The purpose of this study was to elucidate the effects of different exercise intensities in preventing the decline of cognitive function and lipolysis associated with a high-fat diet-induced obesity in growing mice. Material and Methods: Forty male C57BL/6 mice, aged 4 weeks, were divided into the normal diet (CO, n = 10) and high-fat diet (HF, n = 30) groups to induce obesity for 8 weeks. Subsequently, the HF group was subdivided equally into the HF, HF + low-intensity training (HFLT), and HF + high-intensity training (HFHT) groups, and mice were subjected to treadmill training for 8 weeks. Results: Following the 8-week training intervention, body weight and fat mass were significantly lower in the training groups than in the HF group (p < 0.05). Adipose triglyceride lipase (ATGL), hormone-sensitive lipase (HSL), and monoglyceride lipase levels were significantly higher in the training groups than in the HF group (p < 0.05), and the ATGL and HSL levels were significantly higher in the HFHT group than in the HFLT group (p < 0.05). The Y-maze test showed that the training groups had a higher number of total entries and percent alternation than the HF group (p < 0.05). Hippocampal nerve growth factor, brain-derived neurotrophic factor, and neurotrophin-3 levels were significantly higher in the training group than in the HF group (p < 0.05). However, there was no significant difference according to the exercise intensity among the groups. Conclusions: The results of this study suggested that low-intensity exercise is as effective as a high-intensity exercise in preventing the decline of cognitive function and lipolysis, and far more effective in terms of an expected efficiency of workload and prevention of side effects.