Miracle-dz/UniFAR-FTUs huggingface dataset:
The Ecotoxicity Approach as a Tool for Assessing Vermiremediation Effectiveness in Polychlorobiphenyls, Polychlorodibenzo-p-Dioxins and Furans Contaminated Soils

Chemical analyses are inadequate for assessing soil biological quality. Instead, the soil living community can be used both for monitoring and restoring soil health. The aim of this research was to verify vermiremediation efficiency in PCDD/F and PCB contaminated soils from Brescia-Caffaro (Italy), using an ecotoxicity approach. To gauge whether Caffaro soil could sustain a living community, a characterization of the arthropod community was conducted. Earthworms’ suitability for soil bioremediation was assessed applying ecotoxicity tests. Five treatments were set up: 1) contaminated soil; 2) contaminated soil + Eisenia fetida; 3) contaminated soil + Lepidium sativum; 4) contaminated soil + E. fetida + L. sativum, 5) uncontaminated soil + E. fetida. The ecotoxicity tests were: L. sativum germination index and root elongation inhibition, and Folsomia candida survival and reproduction, applied on soil and elutriate on: starter soil (T0), after 56 and 112 days (T56 and T112), the last after water percolation. Soil arthropod community was dominated by Hypogastruridae, Oribatida and, to a lesser degree, Formicidae and Coleoptera larvae. Ecotoxicity tests showed that F. candida reproduction and L. sativum root elongation were more adversely affected by pollutants than survival and germination. The higher soil ecotoxicity at T112 than at T56, suggested higher contaminant bioavailability after water addition. F. candida showed more variability between soil and elutriate than L. sativum. Both bioassays suggested earthworm treatment as the most promising. The importance of selecting different organisms in soil ecotoxicity monitoring, and the role of elutriate like a solid phase complement, was highlighted.
De Novo Large Deletion Leading to Fragile X Syndrome

Fragile X syndrome (FXS) is the most frequent cause of X-linked inherited intellectual disabilities (ID) and the most frequent monogenic form of autism spectrum disorders. It is caused by an expansion of a CGG trinucleotide repeat located in the 5′UTR of the FMR1 gene, resulting in the absence of the fragile X mental retardation protein, FMRP. Other mechanisms such as deletions or point mutations of the FMR1 gene have been described and account for approximately 1% of individuals with FXS. Here, we report a 7-year-old boy with FXS with a de novo deletion of approximately 1.1 Mb encompassing several genes, including the FMR1 and the ASFMR1 genes, and several miRNAs, whose lack of function could result in the observed proband phenotypes. In addition, we also demonstrate that FMR4 completely overlaps with ASFMR1, and there are no sequencing differences between both transcripts (i.e., ASFMR1/FMR4 throughout the article).
RNA Sequencing Reveals Alterations and Similarities in Cell Metabolism, Hypoxia and Immune Evasion in Primary Cell Cultures of Clear Cell Renal Cell Carcinoma

The treatment of advanced renal cell carcinoma remains a challenge. To develop novel therapeutic approaches, primary cell cultures as an in vitro model are considered more representative than commercial cell lines. In this study, we analyzed the gene expression of previously established primary cell cultures of clear cell renal cell carcinoma by bulk (3’m)RNA sequencing and compared it to the tissue of origin. The objectives were the identification of dysregulated pathways under cell culture conditions. Furthermore, we assessed the suitability of primary cell cultures for studying crucial biological pathways, including hypoxia, growth receptor signaling and immune evasion. RNA sequencing of primary cell cultures of renal cell carcinoma and a following Enrichr database analysis revealed multiple dysregulated pathways under cell culture conditions. 444 genes were significantly upregulated and 888 genes downregulated compared to the tissue of origin. The upregulated genes are crucial in DNA repair, cell cycle, hypoxia and metabolic shift towards aerobic glycolysis. A downregulation was observed for genes involved in pathways of immune cell differentiation and cell adhesion. We furthermore observed that 7275 genes have a similar mRNA expression in cell cultures and in tumor tissue, including genes involved in the immune checkpoint signaling or in pathways responsible for tyrosine kinase receptor resistance. Our findings confirm that primary cell cultures are a representative tool for specified experimental approaches. The results presented in this study give further valuable insights into the complex adaptation of patient-derived cells to a new microenvironment, hypoxia and other cell culture conditions, which are often neglected in daily research, and allow new translational and therapeutic approaches.
Density Measurement of Molten Drop With Aerodynamic Levitation and Laser Heating

Thermophysical properties of molten core materials (corium) are necessary input parameters of models and computer codes which predict the severe accident progression in light water reactors. The corium contains the components of UO2, ZrO2, Zr and Fe. The measurement of molten corium properties is a very challenging task due to high melting points of corium which can reach 3000 K. This paper presents a density measurement system for a molten drop based on techniques of aerodynamic levitation, laser heating and image processing. A sphere of alumina was firstly levitated by argon gas flow above a conical converging-diverging nozzle. The sphere was then heated up and melted into a liquid drop by a laser beam. The shape of the drop was recorded by a high-speed camera, and the density was calculated from image processing.
Retrospective Evaluation of Outcome in Dogs With Appendicular Osteosarcoma Following Hypofractionated Palliative Radiation Therapy With or Without Bisphosphonates: 165 Cases (2010–2019)

Objective To report the survival times in dogs that received a standardized palliative-intent radiation therapy (RT) protocol for the treatment of canine appendicular osteosarcoma (OSA), alone or in combination with bisphosphonates (BPs), and to determine whether the addition of BPs affects survival. A secondary objective was to identify prognostic features that may influence outcome in dogs undergoing treatment. Design Retrospective case series. Materials and Methods Dogs with presumed or confirmed OSA of the appendicular limb treated with daily hypofractionated RT (8 Gy x 2) at the Flint Animal Cancer Center between 2010 and 2019 were evaluated retrospectively. Clinical data were abstracted from the medical records, and adjuvant therapies were noted. Outcome was assessed using medical records and electronic follow up. Results One hundred and sixty-five dogs were included. Sixty-eight dogs received BPs as a part of their palliative-intent treatment. The median survival time from first RT treatment to death was not significantly different between groups (119 vs. 109 days for BP and non-BP groups, respectively, p = 0.758). Only age (>9 years) was found to be prognostic in this population (p = 0.031). Factors that were not found to be associated with survival time included BP drug type, timing of BP administration, tumor location, weight, breed, sex, time to treatment, concurrent administration of chemotherapy, and salvage amputation. Conclusions This study suggests no difference in outcome for dogs treated with and without BPs in addition to hypofractionated RT. Prospective studies are needed to determine if the addition of BPs to hypofractionated RT leads to an improved quality of life in dogs undergoing palliative-intent treatment for OSA.
Is It Polite to Hiss?: Nonverbal Sound Objects as Markers of (Im)politeness in Korean

This paper explores the politeness-related functions of an ingressive hissing-like sound that occurs frequently in Korean and which is typically transcribed as ssup. This nonverbal sound is produced by drawing air alongside the tongue or between the teeth and may appear either before the production of a turn, or during turn production. Previous studies have shown that Korean speakers produce more frequent hisses when addressing status superiors. This suggests a politeness-related function, particularly given the importance of marking social distance toward elders and superiors in Korean culture. In the current paper, we explore the pragmatic functions of these hisses in three distinct datasets (oral discourse completion task, dyad recordings, drama interactions). Our analysis shows that hisses perform four types of social actions: displaying delicacy, activity shift, word search, and conveying skepticism. Hisses occur at interactional or relational trouble spots to delay the progression of talk, while allowing the speaker to initiate or maintain their turn. They co-occur with other verbal and multimodal markers of hesitation. We thus see the underlying core meaning of hisses as being related to difficulty, uncertainty and hesitation, and the conveyance of reluctance to perform the problematic talk. The increased frequency of hisses and multimodal hesitation in interactions with status superiors shows us that speakers are trying to show more care and effort when interacting in situations where social distance exists. These results contribute toward our understanding of politeness as a multimodal and holistic phenomenon that is expressed across multiple verbal and nonverbal dimensions.
Plant Health Status Affects the Functional Diversity of the Rhizosphere Microbiome Associated With Solanum lycopersicum

The microorganisms inhabiting soil perform unique functions in the growth and development of plants. However, little is known about how plant health status affects their potential functions. We examined the functional diversity of the microbiome inhabiting the rhizosphere of powdery mildew diseased and healthy tomato plants alongside the bulk soils in South Africa's Northwest Province employing a shotgun metagenomics approach. We envisaged that the functional categories would be abundant in the healthy rhizosphere (HR) of the tomato plant. We collected soil from the rhizosphere of healthy, powdery mildew diseased tomato plants (DR), and bulk soil (BR). After that, their DNA was extracted. The extracted DNA was subjected to shotgun metagenomic sequencing. Our result using the SEED subsystem revealed that a total of fifteen (15) functional categories dominated the healthy rhizosphere, seven (7) functional categories dominated the diseased rhizosphere. At the same time, six (6) functions dominated the bulk soil. Alpha (α) diversity assessment did not reveal a significant difference (p > 0.05) in all the soil samples, but a considerable difference was observed for beta (β) diversity (P = 0.01). The functional categories obtained in this research were highly abundant in HR. Therefore, this study shows that the functions groups of the rhizosphere microbiomes were more abundant in HR samples as compared to others. The high prevalence of functions groups associated with rhizobiomes in the tomato rhizosphere indicates the need for more research to establish the functional genes associated with these rhizosphere microbiomes.
Interfacial and Interlaminar Shear Strength of Unidirectional Viscose Fibre-Reinforced Epoxy Composites—an Overview of the Comparability of Results Obtained by Different Test Methods

In this study, the apparent interfacial and interlaminar shear strength (IFSS and ILSS) of single fibres and unidirectional (UD) viscose fibre-reinforced epoxy composites were characterised using different test methods. Microbond and pull-out tests were used to analyse the IFSS of single fibres embedded in epoxy and the transverse tensile test was applied to measure the IFSS of UD fibre-reinforced composites. The short beam shear test, single edge notched bending test (SENB), double-notched tensile test and double-notched compression test were applied to characterise the ILSS. The composites were produced from continuous tows with fibre mass fractions of 20%, 30% and 40% and fibres of different fineness (1.7, 3.3 and 28.0 dtex). The results showed that the different test procedures led to different trends of ILSS depending on the fibre mass fraction and fibre fineness used. The transverse tensile test revealed that the IFSS decreased with increasing fibre mass fraction and fibre diameter. A different trend was found with the short beam shear test and the SENB test for the ILSS. Here, higher values were detected with increasing fibre mass content, and the influence of the fineness was less noticeable. The double-notched shear tests (tensile and compression) showed a different trend: the ILSS increased with increasing fibre mass fraction from 20% to 30%. With a further increase to 40%, the ILSS tend to decrease slightly. An influence of the fibre fineness on the ILSS could not be statistically proven. The different trends of the test methods are attributed to the constitution of the composite and the different load application caused by the test procedures.
A Lumped Two-Compartment Model for Simulation of Ventricular Pump and Tissue Mechanics in Ischemic Heart Disease

Introduction: Computational modeling of cardiac mechanics and hemodynamics in ischemic heart disease (IHD) is important for a better understanding of the complex relations between ischemia-induced heterogeneity of myocardial tissue properties, regional tissue mechanics, and hemodynamic pump function. We validated and applied a lumped two-compartment modeling approach for IHD integrated into the CircAdapt model of the human heart and circulation. Methods: Ischemic contractile dysfunction was simulated by subdividing a left ventricular (LV) wall segment into a hypothetical contractile and noncontractile compartment, and dysfunction severity was determined by the noncontractile volume fraction ( N C V F ). Myocardial stiffness was determined by the zero-passive stress length ( L s 0 , p a s ) and nonlinearity ( k E C M ) of the passive stress-sarcomere length relation of the noncontractile compartment. Simulated end-systolic pressure volume relations (ESPVRs) for 20% acute ischemia were qualitatively compared between a two- and one-compartment simulation, and parameters of the two-compartment model were tuned to previously published canine data of regional myocardial deformation during acute and prolonged ischemia and reperfusion. In six patients with myocardial infarction (MI), the N C V F was automatically estimated using the echocardiographic LV strain and volume measurements obtained acutely and 6 months after MI. Estimated segmental N C V F values at the baseline and 6-month follow-up were compared with percentage late gadolinium enhancement (LGE) at 6-month follow-up. Results: Simulation of 20% of N C V F shifted the ESPVR rightward while moderately reducing the slope, while a one-compartment simulation caused a leftward shift with severe reduction in the slope. Through tuning of the N C V F , L s 0 , p a s , and k E C M , it was found that manipulation of the N C V F alone reproduced the deformation during acute ischemia and reperfusion, while additional manipulations of L s 0 , p a s and k E C M were required to reproduce deformation during prolonged ischemia and reperfusion. Out of all segments with LGE>25% at the follow-up, the majority (68%) had higher estimated N C V F at the baseline than at the follow-up. Furthermore, the baseline N C V F correlated better with percentage LGE than N C V F did at the follow-up. Conclusion: We successfully used a two-compartment model for simulation of the ventricular pump and tissue mechanics in IHD. Patient-specific optimizations using regional myocardial deformation estimated the N C V F in a small cohort of MI patients in the acute and chronic phase after MI, while estimated N C V F values closely approximated the extent of the myocardial scar at the follow-up. In future studies, this approach can facilitate deformation imaging–based estimation of myocardial tissue properties in patients with cardiovascular diseases.
Relationships Between Resilience, Mental Well-Being, and COVID-19 Worries in Collegiate Student-Athletes

The onset of the COVID-19 pandemic was associated with robust declines in well-being for collegiate student-athletes. Worries about COVID-19 have frequently been associated with worsening well-being; therefore, it is important to examine protective factors against well-being decrements. Resilience, one's ability to respond to stress and adversity, may be one such factor. Despite this possible influence, resilience has not yet been studied in student-athletes in this context as the pandemic has progressed. Therefore, the purpose of this study was to examine the moderating role of resilience on the relationship between COVID-19 worries and well-being. In this cross-sectional design, National Collegiate Athletic Association Division III athletes (N = 91) at one university completed surveys on COVID-19 worries, resilience, and well-being between February and March 2021. All competitions had been postponed until the Spring 2021 semester. The findings revealed a negative correlation between COVID-19 worries and well-being (r = −0.21, p = 0.05) and a positive correlation between resilience and well-being (r = 0.44, p < 0.001). Additionally, multiple regression and simple slopes analyses showed that individuals with higher resilience endorsed greater scores of well-being, even when COVID-19 worries increased (β = 0.38, p = 0.02). In conclusion, our results suggest that resilience had a moderating effect on the relationship between COVID-19 worries and well-being.
Privacy Concerns and Information Sharing: The Perspective of the U-Shaped Curve

Privacy concerns are a key predictor of information sharing, yet some critical issues remain unclear. Based on social capital theory, this study argues that the relationship between privacy concerns and information sharing is a U-shaped curve. Users with privacy concerns would not share their private information; however, such users would eventually share their information as long as they trust the website and its members. Furthermore, this study provides a contingency perspective, suggesting that the curvilinear relationship between privacy concerns and information sharing varies with the system evaluation perception and personal motivation levels. The results show that at a high level of system evaluation, the relationship between privacy concerns squared and information sharing is non-significant. In contrast, at a low level of system evaluation, there is a U-shaped relationship between privacy concerns and information sharing. Regarding motivation, the results were congruent with our expectations.
Effect of a Phytogenic Feed Additive in Preventing Calves' Diarrhea

The aims of the present study were to evaluate the preventive and the therapeutic effect of Stodi® as phytogenic feed additive rich in phenolic substances on the calf diarrhea, during the first 24 days of life. A total of 40 calves were included and randomly divided into Group C (control group) and Group T (treated group) with placebo or treatment administration started from the third day of life (T0). Calves belonged to group C received 2 L of warm water, while the calves assigned to group T received 2L of warm water plus 30 g of Stodi®. Solutions administration was maintained until day 21 (T21) that was the end of the experimental period. Calves were weighed at T0 and T21 to assess the average daily gain (ADG). Physical examination and fecal score evaluation were performed daily. The duration of a diarrheic episode, the age of the first diarrhea outbreak (TDE) and the frequency of diarrheic episodes were recorded. Complete blood count, methemoglobin and liver enzymes were evaluated at T0 and at T21 in all the calves by spectrophotometer and clinical chemistry analysis, respectively. Data were analyzed using a mixed model. A Chi-square and a Mann-Whitney test were also performed. No difference was found for ADG between the groups. The difference of mean age at TDE was not statistically significant between C and T group. The number of calves with diarrhea in the C group tended to be higher than that of T group (p = 0.13). Calves in group C spent more days with clinical sign of diarrhea compared to group T (p = 0.016). Complete blood count, methemoglobin and liver enzymes were within the reference ranges. The feed additive Stodi® seemed to be effective in shortening neonatal diarrhea episodes in calves thanks to the administration of 30 g per day of product. The fixed dosage of Stodi® used in our study did not show a preventive effect to reduce the incidence of calf diarrhea.
Biocontrol Potential of Endophytic Streptomyces malaysiensis 8ZJF-21 From Medicinal Plant Against Banana Fusarium Wilt Caused by Fusarium oxysporum f. sp. cubense Tropical Race 4

Banana (Musa spp.) is an important fruit crop cultivated in most tropical countries. Banana Fusarium wilt caused by Fusarium oxysporum f. sp. cubense tropical race 4 (Foc TR4) is the most destructive fungal disease. Biocontrol using endophytic microorganisms is considered as a safety and sustainable strategy. Actinomycetes have a potential for the production of diverse metabolites. Isolation of endophytic actinomycetes with high efficiency and broad-spectrum antagonism is key for exploring biocontrol agents. Our previous study showed that a total of 144 endophytic actinomycetes were isolated from different tissues of medicinal plants in Hainan, China. Especially, strain 8ZJF-21 exhibited a broad-spectrum antifungal activity. Its morphological, physiological, and biochemical characteristics were consistent with the genus Streptomyces. The phylogenetic tree demonstrated that strain 8ZJF-21 formed a distinct clade with Streptomyces malaysiensis. Average nucleotide identity (ANI) was 98.49% above the threshold of novel species. The pot experiment revealed that endophytic Streptomyces malaysiensis 8ZJF-21 could improve the plant resistance to Foc TR4 by enhancing the expression levels of defense-related and antioxidant enzyme genes. It also promoted the plant growth by producing several extracellular enzymes and metabolites. Antifungal mechanism assays showed that S. malaysiensis 8ZJF-21 extract inhibited mycelial growth and spore germination of Foc TR4 in vitro. Pathogenic cells occurred cytoplasmic heterogeneity, disappeared organelles, and ruptured ultrastructure. Sequencing and annotation of genome suggested that S. malaysiensis 8ZJF-21 had a potential of producing novel metabolites. Nineteen volatile organic compounds were obtained from the extract by Gas Chromatography-Mass Spectrometry (GC-MS). Hence, endophytic Streptomyces strains will become essential biocontrol agents of modern agricultural practice.