Miracle-dz/UniFAR-FTUs huggingface dataset:
Phosphorus-Use Efficiency Modified by Complementary Effects of P Supply Intensity With Limited Root Growth Space

Space availability and the maintenance of adequate phosphorus (P) supply in the root zone are essential for achieving high yield and P-use efficiency in maize production by manipulating the root morphology and arbuscular mycorrhizal (AM) fungi colonization. A major trade-off exists between root growth and AM colonization that is influenced by soil P supply intensity and space availability. However, how soil P manipulates the root morphological characteristics and AM colonization to compensate for the limitation of root-growth space induced by high-planting density is not clear. Therefore, pot experiments were conducted to investigate interactions between the root growth and AM fungi by optimizing soil P supply to compensate for limited root growth space induced by high-planting density. Similar shoot biomass and P uptake values were obtained in P200 (200 mg P kg−1 soil) under D = 40 (i.e., diameter of the pot is 40 cm) and P400 under D = 30, and similar values were obtained for root length, tap root length, root angle, lateral root density, and AM colonization. However, the improvement in P supply in the root zone, shoot biomass, and P uptake in P400 under D = 20 were lower than in P200 under D = 30, and there were no significant differences in the root parameters between P200 and P400 under D = 20; similarly, the root growth and AM colonization exhibited similar trends. These results suggest that optimizing P supply in the root zone to regulate the interaction between root morphological traits and AM colonization can compensate for limited root-growth space. Although P supply in the root zone increased after the root-growth space was compressed, it could not meet the P demand of maize; thus, to achieve the most efficient use of P under intensive high-density maize production, it is necessary to optimally coordinate root growth space and P supply in the root zone.
Blocking of EGFR Signaling Is a Latent Strategy for the Improvement of Prognosis of HPV-Induced Cancer

Human papillomavirus (HPV) is a double-stranded DNA (dsDNA) virus, and its high-risk subtypes increase cancer risks. However, the mechanism of HPV infection and pathogenesis still remain unclear. Therefore, understanding the molecular mechanisms and the pathogenesis of HPV are crucial in the prevention of HPV-related cancers. In this study, we analyzed cervix squamous cell carcinoma (CESC) and head and neck carcinoma (HNSC) combined data to investigate various HPV-induced cancer common features. We showed that epidermal growth factor receptor (EGFR) was downregulated in HPV-positive (HPV+) cancer, and that HPV+ cancer patients exhibited better prognosis than HPV-negative (HPV−) cancer patients. Our study also showed that TP53 mutation rate is lower in HPV+ cancer than in HPV− cancer and that TP53 can be modulated by HPV E7 protein. However, there was no significant difference in the expression of wildtype TP53 in both groups. Subsequently, we constructed HPV-human interaction network and found that EGFR is a critical factor. From the network, we also noticed that EGFR is regulated by HPV E7 protein and hsa-miR-944. Moreover, while phosphorylated EGFR is associated with a worse prognosis, EGFR total express level is not significantly correlated with prognosis. This indicates that EGFR activation will induce a worse outcome in HPV+ cancer patients. Further enrichment analysis showed that EGFR downstream pathway and cancer relative pathway are diversely activated in HPV+ cancer and HPV− cancer. In summary, HPV E7 protein downregulates EGFR that downregulates phosphorylated EGFR and inhibit EGFR-related pathways which in turn and consequently induce better prognosis.
Computed Tomography-Based Radiomics for Preoperative Prediction of Tumor Deposits in Rectal Cancer

Objective To develop and validate a computed tomography (CT)-based radiomics model for predicting tumor deposits (TDs) preoperatively in patients with rectal cancer (RC). Methods This retrospective study enrolled 254 patients with pathologically confirmed RC between December 2017 and December 2019. Patients were divided into a training set (n = 203) and a validation set (n = 51). A large number of radiomics features were extracted from the portal venous phase images of CT. After selecting features with L1-based method, we established Rad-score by using the logistic regression analysis. Furthermore, a combined model incorporating Rad-score and clinical factors was developed and visualized as the nomogram. The models were evaluated by the receiver operating characteristic curve (ROC) analysis and area under the ROC curve (AUC). Results One hundred and seventeen of 254 patients were eventually found to be TDs+. Rad-score and clinical factors including carbohydrate antigen (CA) 19-9, CT-reported T stage (cT), and CT-reported peritumoral nodules (+/-) were significantly different between the TDs+ and TDs- groups (all P < 0.001). These factors were all included in the combined model by the logistic regression analysis (odds ratio = 2.378 for Rad-score, 2.253 for CA19-9, 2.281 for cT, and 4.485 for peritumoral nodules). This model showed good performance to predict TDs in the training and validation cohorts (AUC = 0.830 and 0.832, respectively). Furthermore, the combined model outperformed the clinical model incorporating CA19-9, cT, and peritumoral nodules (+/-) in both training and validation cohorts for predicting TDs preoperatively (AUC = 0.773 and 0.718, P = 0.008 and 0.039). Conclusions The combined model incorporating Rad-score and clinical factors could provide a preoperative prediction of TDs and help clinicians guide individualized treatment for RC patients.
Reminiscing and the Passage of Years: Investigating the Role of Affective Autobiographical Memories in Passage of Time Judgments

Previous research has shown that judgments of the experienced velocity of recent years passing by vary depending on the number of autobiographical memories being activated in the moment of judging. While a body of evidence shows affect to have an impact on both prospective and retrospective judgments on the experience of time for short periods, the effect of valence of memories on the experience of the passage of long intervals has not been examined yet. Thus, we asked 282 people to retrieve five either emotionally positive or negative memories from the last 5years before judging the subjectively experienced passage of time of these years. However, positive and negative events differ in some ways beyond valence, e.g., the ascribed impact on the participants’ subsequent lives as well as the stability of ascribed affective intensity: The latter decreased over time for negative but not for positive memories while ascribed impact was markedly higher for positive memories. Results indicate no significant differences between the two conditions, even after controlling for the aforementioned differences. However, exploratory analyses show that participants rate time to have passed faster, the longer the activated memories dated back on average, a result that seems in line with contextual-change hypothesis.
Serum Uric Acid and Kidney Disease Measures Independently Predict Cardiovascular and Total Mortality: The Uric Acid Right for Heart Health (URRAH) Project

Background: Serum uric acid predicts the onset and progression of kidney disease, and the occurrence of cardiovascular and all-cause mortality. Nevertheless, it is unclear which is the appropriate definition of hyperuricemia in presence of chronic kidney disease (CKD). Our goal was to study the independent impact of uric acid and CKD on mortality. Methods: We retrospectively investigated 21,963 patients from the URRAH study database. Hyperuricemia was defined on the basis of outcome specific cut-offs separately identified by ROC curves according to eGFR strata. The primary endpoints were cardiovascular and all-cause mortality. Results: After a mean follow-up of 9.8 year, there were 1,582 (7.20%) cardiovascular events and 3,130 (14.25%) deaths for all causes. The incidence of cardiovascular and all-cause mortality increased in parallel with reduction of eGFR strata and with progressively higher uric acid quartiles. During 215,618 person-years of follow-up, the incidence rate for cardiovascular mortality, stratified based on eGFR (>90, between 60 and 90 and <60 ml/min) was significantly higher in patients with hyperuricemia and albuminuria (3.8, 22.1 and 19.1, respectively) as compared to those with only one risk factor or none (0.4, 2.8 and 3.1, respectively). Serum uric acid and eGFR significantly interact in determining cardiovascular and all-cause mortality. For each SUA increase of 1 mg/dl the risk for mortality increased by 10% even after adjustment for potential confounding factors included eGFR and the presence of albuminuria. Conclusions: hyperuricemia is a risk factor for cardiovascular and all-cause mortality additively to eGFR strata and albuminuria, in patients at cardiovascular risk.
Full-Length Transcriptome: A Reliable Alternative for Single-Cell RNA-Seq Analysis in the Spleen of Teleost Without Reference Genome

Fish is considered as a supreme model for clarifying the evolution and regulatory mechanism of vertebrate immunity. However, the knowledge of distinct immune cell populations in fish is still limited, and further development of techniques advancing the identification of fish immune cell populations and their functions are required. Single cell RNA-seq (scRNA-seq) has provided a new approach for effective in-depth identification and characterization of cell subpopulations. Current approaches for scRNA-seq data analysis usually rely on comparison with a reference genome and hence are not suited for samples without any reference genome, which is currently very common in fish research. Here, we present an alternative, i.e. scRNA-seq data analysis with a full-length transcriptome as a reference, and evaluate this approach on samples from Epinephelus coioides-a teleost without any published genome. We show that it reconstructs well most of the present transcripts in the scRNA-seq data achieving a sensitivity equivalent to approaches relying on genome alignments of related species. Based on cell heterogeneity and known markers, we characterized four cell types: T cells, B cells, monocytes/macrophages (Mo/MΦ) and NCC (non-specific cytotoxic cells). Further analysis indicated the presence of two subsets of Mo/MΦ including M1 and M2 type, as well as four subsets in B cells, i.e. mature B cells, immature B cells, pre B cells and early-pre B cells. Our research will provide new clues for understanding biological characteristics, development and function of immune cell populations of teleost. Furthermore, our approach provides a reliable alternative for scRNA-seq data analysis in teleost for which no reference genome is currently available.
Potential Therapeutic Applications of Pulmonary Surfactant Lipids in the Host Defence Against Respiratory Viral Infections

Pulmonary surfactant is a complex and highly surface-active material. It covers the alveolar epithelium and consists of 90% lipids and 10% proteins. Pulmonary surfactant lipids together with pulmonary surfactant proteins facilitate breathing by reducing surface tension of the air-water interface within the lungs, thereby preventing alveolar collapse and the mechanical work required to breathe. Moreover, pulmonary surfactant lipids, such as phosphatidylglycerol and phosphatidylinositol, and pulmonary surfactant proteins, such as surfactant protein A and D, participate in the pulmonary host defense and modify immune responses. Emerging data have shown that pulmonary surfactant lipids modulate the inflammatory response and antiviral effects in some respiratory viral infections, and pulmonary surfactant lipids have shown promise for therapeutic applications in some respiratory viral infections. Here, we briefly review the composition, antiviral properties, and potential therapeutic applications of pulmonary surfactant lipids in respiratory viral infections.
Paternal Resistance Exercise Modulates Skeletal Muscle Remodeling Pathways in Fathers and Male Offspring Submitted to a High-Fat Diet

Although some studies have shown that a high-fat diet (HFD) adversely affects muscle extracellular matrix remodeling, the mechanisms involved in muscle trophism, inflammation, and adipogenesis have not been fully investigated. Thus, we investigated the effects of 8 weeks of paternal resistance training (RT) on gene and protein expression/activity of critical factors involved in muscle inflammation and remodeling of fathers and offspring (offspring exposed to standard chow or HFD). Animals were randomly distributed to constitute sedentary fathers (SF; n = 7; did not perform RT) or trained fathers (TF n = 7; performed RT), with offspring from mating with sedentary females. After birth, 28 male pups were divided into four groups (n = 7 per group): offspring from sedentary father submitted either to control diet (SFO-C) or high-fat diet (SFO-HF) and offspring from trained father submitted to control diet (TFO-C) or high-fat diet (TFO-HF). Our results show that an HFD downregulated collagen mRNA levels and upregulated inflammatory and atrophy pathways and adipogenic transcription factor mRNA levels in offspring gastrocnemius muscle. In contrast, paternal RT increased MMP-2 activity and decreased IL-6 levels in offspring exposed to a control diet. Paternal RT upregulated P70s6k and Ppara mRNA levels and downregulated Atrogin1 mRNA levels, while decreasing NFκ-B, IL-1β, and IL-8 protein levels in offspring exposed to an HFD. Paternal physical training influences key skeletal muscle remodeling pathways and inflammatory profiles relevant for muscle homeostasis maintenance in offspring submitted to different diets.
Electrophysiological Signatures of Perceiving Alternated Tone in Mandarin Chinese: Mismatch Negativity to Underlying Tone Conflict

Although phonological alternation is prevalent in languages, the process of perceiving phonologically alternated sounds is poorly understood, especially at the neurolinguistic level. We examined the process of perceiving Mandarin 3rd tone sandhi (T3 + T3 → T2 + T3) with a mismatch negativity (MMN) experiment. Our design has two independent variables (whether the deviant undergoes tone sandhi; whether the standard and the deviant have matched underlying tone). These two independent variables modulated ERP responses in both the first and the second syllables. Notably, despite the apparent segmental conflict between the standard and the deviant in all conditions, MMN is only observed when neither the standard nor the deviant undergoes tone sandhi, suggesting that discovering the underlying representation of an alternated sound could interfere with the generation of MMN. A tentative model with three hypothesized underlying processing mechanisms is proposed to explain the observed latency and amplitude differences across conditions. The results are also discussed in light of the potential electrophysiological signatures involved in the process of perceiving alternated sounds.
Climate Change and Emotions: Analysis of People’s Emotional States in Southern Ecuador

Climate change involves multiple emotional expressions associated with specific labels, notably: ‘concern,’ ‘guilt,’ or ‘scepticism. ’ However, there are other types of emotions that have been less analysed, such as ‘powerlessness,’ ‘anger’ and ‘confusion’ that are of equal importance for predicting behavioural changes toward this climatic issue. Likewise, few studies in this research field rely on qualitative data to understand and identify the causative agents for the emotional arousal. This research explores a range of emotions, mixing those that have been widely studied and those that have been hardly analysed. It also looks at the demographic parameters associated with such emotions using a population sample from southern Ecuador. The study analyses quantitative and qualitative data gathered through structured-questionnaires whereby participants were given agency to select and define how they themselves sense emotionally climate change. The results indicate that two of the five participants’ most selected emotions are shared with other nations (‘concern,’ ‘guilt’), while the other three have been less reported and studied in the climate change field (‘powerlessness,’ ‘anger,’ and ‘confusion’). These emotions were found to be aroused by different reasons associated with specific demographic variables. The findings reveal the role of the cultural and local environment in the emotional arousal and its relevance for designing more effective climate communication campaigns.
Extraction of rare earth elements from low-grade Bauxite via precipitation reaction

The aim of this research was to determine the optimum hydrometallurgical parameters to extract the rare earth elements (REE) from low-grade bauxite through acid leaching and precipitation reaction. REE or lanthanide recovery by a precipitation method with sodium sulphate and sodium phosphate as precipitation agents is reported where the effect of pH and recovery of REE are described. The metal composition of REE in low-grade bauxite after treatment were analyzed by ICP-OES. The total recovery values of REE elements at the first precipitation reaction using sodium sulphate as the precipitation agent at pH 3.5 showed ~68.2% of lanthanum, ~18.9% cerium, and ~7.8% yttrium. Lanthanum was the rare-earth element present at the highest concentration in the low-grade bauxite after the series treatments. An optimum pH of 3.5 for precipitation of rare-earth elements using sodium sulphate was demonstrated where this method is recommended for the extraction of REE elements from low-grade bauxite.
Physical characterization of red blood cell aggregation

In this work, five aspects of the red blood cell aggregation induced by macromolecules are investigated. A rheological approach focused on the normalization of viscosity as a function of the macromolecular adsorption rates using a commercial rheometer is proposed. Derived from that approach, the yield stress of aggregating red blood cell suspensions is investigated. The sedimentation rates of the utilized biological system are then studied. Microscopical investigations, including measurements of the microscopical aggregation index, lead to the conclusion that the C-reactive protein, a plasma protein, does not influence the aggregation behavior of red blood cells. Detailed microscopical studies on the morphology of the interaction zones of aggregated red blood cells show that these strongly depend on the macromolecular concentration in good agreement with numerical simulations that allow to derive an approximation of the interaction energies. The latter are also directly measured with single cell force spectroscopy using an atomic force microscope with the additional result that the viscosity of the surrounding medium can influence the results significantly. Finally, the physical origin of aggregation is discussed and supported by several additional measurements. This allow to combine two existing theories and explain the bell-shape of interaction energy versus macromolecular concentration curve in a new way.
GENETIC DIVERSITY OF Lutzomyia (Nyssomyia) intermedia IN AN ENDEMIC AREA OF AMERICAN CUTANEOUS LEISHMANIASIS, STATE OF PARANÁ, BRAZIL

Lutzomyia intermedia (Diptera: Psychodidae) features as one of the main vectors that are involved in the transmission of American cutaneous leishmaniasis (ACL) in the Neotropical region. However, genetic studies involving this taxon are still incipient and important for understanding the level of variability of different populations, their role, and implications as vectors. The aim of this study was to determine the level of genetic diversity of L. intermedia present in the Ribeira River Valley, an area of ACL transmission in the state of Paraná, Brazil, through the Random amplified polymorphic DNA (RAPD). Two municipalities were chosen to collect sand flies: Cerro Azul (new transmission area of the ACL) and Adrianópolis (endemic area of the ACL). The insects were captured in the house, in the peridomicile and in the wild (forest). Two of the used markers made it possible to estimate the polymorphism of the studied populations, resulting in 40 genotypes, most of them from peridomicile. The dendrogram generated by the analysis with the primer A10 showed different degrees of similarity, suggesting that there may be gene flow in the studied populations. The Principal Coordinate Analysis (PCO) with the A2 primer, was useful in grouping L. intermedia according to its ecological and geographical origin. There was no distinction between the lineages composing the L. intermedia complex. The results of this study, with the record of great genotypic diversity in L. intermedia, may contribute to explain the maintenance of the life cycle of Leishmania braziliensis (Kinetoplastida: Trypanosomatidae) in the region.
Measuring Consumer Shopping Oriented Web Site Success: A Motivation-Based Model

INTRODUCTION The Technology Acceptance Model (TAM) has been widely used since the late 1980s to explain users’ acceptance and use of information technology (Keil et al., 1995). In particular, perceived usefulness and perceived ease of use have been demonstrated to be valid predictors of individual’s acceptance of organizational information systems or information technologies (Adams et al., 1992, Davis, 1989, Doll et al., 1998) . Recently TAM has been applied to understanding web information systems usage (Venkatesh, 2000, Moon and Kim, 2000, Koufaris, 2002, Hackbarth et al., 2003). However, applying the TAM to web information systems requires a number of adaptations since web users may have numerous goals. For example, web users utilize the web for a range of activities including general browsing (82.6%), entertainment (56.6%), work (50.9%) and shopping (10.5%) ( c.f., http://www.cc.gatech.edu/ gvu/user_surveys/papers/survey_3_paper.pdf ). Thus, unlike traditional organizational information systems, web systems are used for a variety of activities including both work and pleasure. Because of this, the use of perceived usefulness and perceived ease of use are not likely the only motivating factors behind web information system use (Moon and Kim, 2001) . Recent research has extended the TAM model by including intrinsic motivating factors to take into account a wider and more realistic assessment of users’ goals (Venkatesh, 2000, Moon and Kim, 2000, Koufaris, 2002, Hackbarth et al., 2003). We propose a new updated model that takes into account intrinsic and extrinsic motivating factors and also provides additional dimensions of web site success that shed light on the perceived usefulness of these systems. Thus, the purpose of this research is to develop and test a consumer shopping based web information system success model that can be used to assess web site success or web site adoption intent.