Miracle-dz/UniFAR-FTUs huggingface dataset:
Repetitive Thinking as a Psychological Cognitive Style in Midlife Is Associated with Lower Risk for Dementia Three Decades Later

Aims: To examine the association of a reported tendency toward repetitive thinking (RT) in midlife when confronting difficulties in family and work settings with dementia many years later. Methods: A tendency toward RT was assessed in approximately 9,000 male participants in the Israeli Ischemic Heart Disease study in 1965. The subjects were categorized according to their tendency toward RT in familial and work settings as: 1 = always forget; 2 = tend to forget; 3 = tend to think repetitively, and 4 = usually think repetitively. Dementia was assessed over 3 decades later in 1,889 participants among 2,604 survivors of the original cohort. Results: The prevalence rates of dementia were 24, 19, 15 and 14% in the 4 groups of tendency toward RT in stressful work situations with superiors (p for trend < 0.0002), respectively. The prevalence rates of dementia were 21, 18, 14 and 14% in the 4 groups of tendency toward RT in familial situations (p for trend < 0.004), respectively. These associations held after multivariate analysis. Conclusions: The tendency toward RT when confronting distress is associated with a lower risk for dementia. Future studies should assess possible mechanisms and potentials for intervention and modification.
ANTENATAL BETAMETHASONE AUGMENTS EARLY RISE IN PULMONARY PERFUSION AT BIRTH IN PRETERM LAMBS: ROLE OF DUCTAL SHUNTING AND RIGHT VENTRICULAR OUTFLOW DISTRIBUTION

The glucocorticosteroid betamethasone is routinely administered via maternal intramuscular injection to enhance fetal lung maturation before anticipated preterm birth. Although antenatal betamethasone increases fetal pulmonary arterial (PA) blood flow, whether this agent alters the contribution of 1) right ventricular (RV) output or 2) left-to-right shunting across the ductus arteriosus to rises in PA blood flow after preterm birth is unknown. To address this question, anesthetized control (n = 7) and betamethasone-treated (n = 7) preterm fetal lambs (gestation 127 ± 1 days, means ± SD) were instrumented with aortic, pulmonary, and left atrial catheters as well as ductus arteriosus and left PA flow probes to calculate RV output, with hemodynamics measured for 30 min after cord clamping and mechanical ventilation. Mean PA blood flow was higher in betamethasone-treated than in control lambs over the initial 10 min after birth (P < 0.05). This higher PA flow was accompanied by 1) a greater pulmonary vascular conductance (P ≤ 0.025), 2) a larger proportion of RV output passing to lungs (P ≤ 0.01), despite a fall in this output, and 3) earlier reversal and a greater magnitude (P ≤ 0.025) of net ductal shunting, due to the combination of higher left-to-right (P ≤ 0.025) and lesser right-to-left phasic shunting (P ≤ 0.025). These results suggest that antenatal betamethasone augments the initial rise in PA blood flow after birth in preterm lambs, with this augmented rise supported by the combination of 1) a greater redistribution of RV output toward the lungs and 2) a faster and larger reversal in net ductal shunting underpinned not only by greater left-to-right, but also by lesser right-to-left phasic shunting.
The expression characteristics of mt-ND2 gene in chicken

Abstract Subunit 2 of NADH dehydrogenase (ND2) is encoded by the mt-ND2 gene and plays a critical role in controlling the production of the mitochondrial reactive oxygen species. Our study focused on exploring the mt-ND2 tissue expression patterns and the effects of energy restriction and dietary fat (linseed oil, corn oil, sesame oil or lard) level (2.5% and 5%) on its expression in chicken. The results showed that mt-ND2 gene was expressed in the 15 tissues of hybrid chickens with the highest level in heart and lowest level in pancreas tissue; 30% energy restriction did not significantly affect mt-ND2 mRNA level in chicken liver tissue. Both the mt-ND2 mRNA levels in chicken pectoralis (p < 0.05) and hepatic tissues (p < 0.05) at 42 d-old were affected by the type of dietary fats in 5% level, while not in abdominal fat tissues. The expression of mt-ND2 in hepatic tissues was down-regulated with chicken age (p < 0.01). The interactive effect of dietary fat types with chicken age (p < 0.05) was significant on mt-ND2 mRNA level. The study demonstrated that mt-ND2 gene was extensively expressed in tissues, and the expression was affected by dietary fat types and chicken age.
Short‐ and long‐term outcome and magnetic resonance imaging findings after surgical treatment of thoracolumbar spinal arachnoid diverticula in 25 Pugs

Abstract Background There is a successful outcome after surgical management of spinal arachnoid diverticula (SAD) in up to 82% of cases. Hypothesis/Objectives We hypothesized that Pugs have favorable short‐term and poor long‐term prognosis after surgical treatment of thoracolumbar SAD. The aim of the present investigation was to describe clinical findings, short‐ and long‐term outcomes, and follow‐up magnetic resonance imaging (MRI) findings in Pugs with thoracolumbar SAD. Animals Twenty‐five client owned Pugs with 12‐month follow‐up information after surgical treatment of thoracolumbar SAD. Methods Multicenter retrospective case series. All medical records were searched for Pugs diagnosed with SAD. Data regarding signalment, history, surgical procedure, outcome, histopathology, and follow‐up MRI results were extracted. Results Mean age at presentation was 7.32 (range 2‐11) years, 80% were males. Short‐term outcome was available in 25 dogs, and improvement was confirmed in 80% of dogs. Long‐term outcome was available in 21 dogs, and deterioration was confirmed in 86% of cases, with late‐onset recurrence of clinical signs after initial postsurgical improvement affecting 85% of Pugs. A moderate correlation (r = 0.50) was found between duration of clinical signs and outcome. In 8 dogs with deteriorating clinical signs, follow‐up MRI revealed regrowth of the SAD in 2 cases, new SAD formation in 2 cases, and intramedullary T2W hyperintensity/syringomyelia in 6 cases. Conclusions and Clinical Importance This study suggests that Pugs with thoracolumbar SAD do not have a favorable long‐term prognosis after surgical treatment for reasons yet to be determined.
Electronic structure benchmark calculations of inorganic and biochemical carboxylation reactions

Carboxylation reactions represent a very special class of chemical reactions that is characterized by the presence of a carbon dioxide (CO2) molecule as reactive species within its global chemical equation. These reactions work as fundamental gear to accomplish the CO2 fixation and thus to build up more complex molecules through different technological and biochemical processes. In this context, a correct description of the CO2 electronic structure turns out to be crucial to study the chemical and electronic properties associated with this kind of reactions. Here, a systematic study of CO2 electronic structure and its contribution to different carboxylation reaction electronic energies has been carried out by means of several high‐level ab initio post‐Hartree Fock (post‐HF) and density functional theory (DFT) calculations for a set of biochemistry and inorganic systems. We have found that for a correct description of the CO2 electronic correlation energy it is necessary to include post‐CCSD(T) contributions (beyond the gold standard). These high‐order excitations are required to properly describe the interactions of the four π‐electrons associated with the two degenerated π‐molecular orbitals of the CO2 molecule. Likewise, our results show that in some reactions it is possible to obtain accurate reaction electronic energy values with computationally less demanding methods when the error in the electronic correlation energy compensates between reactants and products. Furthermore, the provided post‐HF reference values allowed to validating different DFT exchange‐correlation functionals combined with different basis sets for chemical reactions that are relevant in biochemical CO2 fixing enzymes. © 2019 Wiley Periodicals, Inc.
MAIT Cells Upregulate α4β7 in Response to Acute Simian Immunodeficiency Virus/Simian HIV Infection but Are Resistant to Peripheral Depletion in Pigtail Macaques

Mucosal-associated invariant T (MAIT) cells are nonconventional T lymphocytes that recognize bacterial metabolites presented by MR1. Whereas gut bacterial translocation and the loss/dysfunction of peripheral MAIT cells in HIV infection is well described, MAIT cells in nonhuman primate models are poorly characterized. We generated a pigtail macaque (PTM)–specific MR1 tetramer and characterized MAIT cells in serial samples from naive and SIV– or simian HIV–infected PTM. Although PTM MAIT cells generally resemble the phenotype and transcriptional profile of human MAIT cells, they exhibited uniquely low expression of the gut-homing marker α4β7 and were not enriched at the gut mucosa. PTM MAIT cells responded to SIV/simian HIV infection by proliferating and upregulating α4β7, coinciding with increased MAIT cell frequency in the rectum. By 36 wk of infection, PTM MAIT cells were activated and exhibited a loss of Tbet expression but were not depleted as in HIV infection. Our data suggest the following: 1) MAIT cell activation and exhaustion is uncoupled from the hallmark depletion of MAIT cells during HIV infection; and 2) the lack of PTM MAIT cell enrichment at the gut mucosa may prevent depletion during chronic infection, providing a model to assess potential immunotherapeutic approaches to modify MAIT cell trafficking during HIV infection.
Improving Virtual Reality Streaming using HTTP/2

The demand for 360° Virtual Reality (VR) videos is expected to grow in the near future, thanks to the diffusion of VR headsets. VR Streaming is however challenged by the high bandwidth requirements of 360° videos. To save bandwidth, we spatially tile the video using the H.265 standard and stream only tiles in view at the highest quality. The video is also temporally segmented, so that each temporal segment is composed of several spatial tiles. In order to minimize quality transitions when the user moves, an algorithm is developed to predict where the user is likely going to watch in the near future. Consequently, predicted tiles are also streamed at the highest quality. Finally, the server push in HTTP/2 is used to deliver the tiled video. Only one request is sent from the client; all the tiles of a segment are automatically pushed from the server. This approach results in a better bandwidth utilization and video quality compared to traditional streaming over HTTP/1.1, where each tile has to be requested independently by the client. We showcase the benefits of our framework using a prototype developed on a Samsung Galaxy S7 and a Gear VR, which supports both tiled and non-tiled videos and streaming over HTTP/1.1 and HTTP/2. Under limited bandwidth conditions, we demonstrate how our framework can improve the quality watched by the user compared to a non-tiled solution where all of the video is streamed at the same quality. This result represents a major improvement for the efficient streaming of VR videos.
Evolution and Functional Analysis of orf1 Within nif Gene Cluster from Paenibacillus graminis RSA19

Paenibacillus is a genus of Gram-positive, facultative anaerobic and endospore-forming bacteria. Genomic sequence analysis has revealed that a compact nif (nitrogen fixation) gene cluster comprising 9–10 genes nifBHDKENX(orf1)hesAnifV is conserved in diazotrophic Paenibacillus species. The evolution and function of the orf1 gene within the nif gene cluster of Paenibacillus species is unknown. In this study, a careful comparison analysis of the compositions of the nif gene clusters from various diazotrophs revealed that orf1 located downstream of nifENX was identified in anaerobic Clostridium ultunense, the facultative anaerobic Paenibacillus species and aerobic diazotrophs (e.g., Azotobacter vinelandii and Azospirillum brasilense). The predicted amino acid sequences encoded by the orf1 gene, part of the nif gene cluster nifBHDKENXorf1hesAnifV in Paenibacillus graminis RSA19, showed 60–90% identity with those of the orf1 genes located downstream of nifENX from different diazotrophic Paenibacillus species, but shared no significant identity with those of the orf1 genes from different taxa of diazotrophic organisms. Transcriptional analysis showed that the orf1 gene was expressed under nitrogen fixation conditions from the promoter located upstream from nifB. Mutational analysis suggested that the orf1 gene functions in nitrogen fixation in the presence of a high concentration of O2.
Reconciling Ecogeographical Rules: Rainfall and Temperature Predict Global Colour Variation in the Largest Bird Radiation

Ecogeographical rules that associate climate with organismal form and function can reveal patterns of climatic adaptation. Two rules link animal coloration with climate: Gloger’s rule (darker coloration where wet and warm), and Bogert’s rule (darker coloration where cold). Whereas Gloger’s rule was proposed for endotherms, and Bogert’s rule for ectotherms, both rules may apply more broadly, despite their seemingly opposing effects. Here we test this contradiction on a global scale across passerine birds. Consistent with Gloger’s rule, birds were darker in wetter areas and, following Bogert’s rule, lighter where warm, although birds became lighter again at very low temperatures. Rainfall and temperature had antagonistic or additive effects depending on their pattern of covariation, and this predicted whether birds followed the rules. We integrate both rules into a general framework to explain heterogeneity in climatic effects on coloration, which has implications to understand patterns of diversification, climatic adaptation and climate change impacts.
Interaction between an ATP-Binding Cassette A1 (ABCA1) Variant and Egg Consumption for the Risk of Ischemic Stroke and Carotid Atherosclerosis: a Family-Based Study in the Chinese Population

Aims: ATP-binding cassette A1 (ABCA1) plays an important role in reducing the risk of stroke. Egg is the major source of dietary cholesterol and is known to be associated with the risk of stroke and atherosclerosis. We aimed to assess the effects of interaction between an ABCA1 variant (rs2066715) and egg consumption on the risk of ischemic stroke (IS), carotid plaque, and carotid-intima media thickness (CIMT) in the Chinese population. Methods: In total, 5869 subjects (including 1213 IS cases) across 1128 families were enrolled and divided into two groups based on the median egg consumption (4 eggs per week). In the analyses for the presence of carotid plaque and CIMT, 3171 out of 4656 IS-free controls without self-reported history of coronary heart disease and lipid-lowering medications were included. Multilevel logistic regression models were used to model the genetic association of rs2066715 with the risk of IS, and mixed-effect linear regression for the genetic association of rs2066715 with carotid plaque, and CIMT. The gene-by-egg cross-product term was included in the regression model for interaction analysis. Results: We found that rs2066715 was associated with the increased risk of carotid plaque among those who consumed < 4 eggs per week after adjustment (odds ratio [95% confidence interval]: 1.61 [1.08, 2.39], P = 0.019). A significant effect of interaction between rs2066715 and egg consumption on the risk of carotid plaque was identified (P = 0.011). Conclusion: rs2066715 was found to interact with egg consumption in modifying the risk of carotid plaque in the Chinese population.
Raman Spectroscopic Studies of Dinaphthothienothiophene (DNTT)

The application of dinaphthothienothiophene (DNTT) molecules, a novel organic semiconductor material, has recently increased due to its high charge carrier mobility and thermal stability. Since the structural properties of DNTT molecules, such as the molecular density distribution and molecular orientations, significantly affect their charge carrier mobility in organic field-effect transistors devices, investigating these properties would be important. Here, we report Raman spectroscopic studies on DNTT in a transistor device, which was further analyzed by the density functional theory. We also show a perspective of this technique for orientation analysis of DNTT molecules within a transistor device.
Molecular dynamics simulation revealed the intrinsic conformational change of cellular inhibitor of apoptosis protein-1

Abstract Inhibitor of apoptosis proteins (IAPs) are important regulators of apoptosis, and protein targets for the development of anti-cancer drugs. Cellular inhibitor of apoptosis protein-1 (cIAP1) is an important member of IAPs. Peptides or small-molecular antagonists can induce the dimerization, auto-ubiquitination, and proteasomal degradation of the cellular inhibitor of apoptosis protein-1 (cIAP1). While in the absence of antagonists, several mutations of the cIAP1 protein also lead to its dimerization and auto-ubiquitination. Even though the crystal structure of cIAP1 protein has been determined, the intrinsic mechanism of its dimerization remains unexplored. Accumulating evidence indicated that intrinsic conformational change existed during the binding of antagonists with cIAP1 protein, or introduction of mutations. To reveal this intrinsic conformational change, molecular dynamics simulations at microsecond scale were applied for the wild-type and mutant-type cIAP1 proteins. Compared to the crystal structure, significant conformational change was observed during the simulations, which could explain the importance of previously identified key mutations. To validate these findings revealed by our simulations, a new mutation D303A was constructed and the following native polyacrylamide gel electrophoresis (native-PAGE) assay observed a proportion of spontaneous dimerization, in comparison with the wild-type control. Taken together, these computational and experimental results revealed the intrinsic conformational change of cIAP1, which could not only explain previously identified key mutations, but also be exploited for further design and development of anti-tumor compounds that target the cIAP1 protein. Communicated by Ramaswamy H. Sarma
Scoring upper-extremity motor function from EEG with artificial neural networks: a preliminary study

Objective. Motor function of chronic stroke survivors is generally accessed using clinical motor assessments. These motor assessments are partially subjective and require prior training for the examiners. Additionally, those motor function assessments require the health professionals to be present in person. The method proposed in this paper has the potential to radically change the way motor function is assessed. Approach. This work investigates the feasibility of automatically scoring upper-extremity motor function from EEG using artificial neural networks. Twelve healthy participants and fourteen participants with chronic stroke participated in this study. EEG data were recorded while the participants were clicking a button. Convolutional neural network models were trained based on the participants’ Fugl Meyer motor assessment score. Main results. The result showed that the proposed method achieved high prediction accuracy both within (n = 14, r = 0.9921, p = 3.3907 × 10−12) and cross (n = 14, r = 0.9867, p = 7.9342 × 10−11) participant testing. Significance. This evidence suggests the proposed method is feasible to be used as a stable and objective measurement for motor function assessment.
Phylogenetic relationship of Eurasian lynx (Lynx lynx) revealed by complete mitochondrial genome

Abstract The Eurasian lynx (Lynx lynx) is an Endangered species in northeast China. We first obtained muscle sample, extracted the sample DNA and sequenced the whole mtDNA genome of lynx from northeast China. We reconstructed the phylogenetic tree of Eurasian lynx and 10 other most closely related Felidae species. This lynx's complete mitogenome is 17 054bp in length, includes 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and one control region. The phylogenetic tree confirmed previous research results.
Ethics in humanitarian efforts: giving due credit to the local team

Abstract Background It has become increasingly apparent that only the truly effective humanitarian work emphasises empowering local practitioners. One problem, though, is that we are often seen as the “experts” who have come to “save” the children. This perception may adversely affect the confidence in the country’s own providers. Methods Non-profit organisations performing paediatric heart surgery in developing countries were identified from two sources: the CTSnet “volunteerism” web page and an Internet search using the term “Pediatric Heart Surgery Medical Mission. ” The website of each organisation was reviewed, seeking a “purpose” or “mission” statement or summary of the organisation’s work. A separate Internet search of news articles was performed. The top five articles were analysed for each organisation, and the findings are then analysed using the Principlist and Utilitarian ethical systems. Results A total of 10 separate non-profit organisations were identified. The websites of eight (80%) placed significant emphasis on the educational aspects of their work and/or on interaction with local professionals. However, of 43 news articles reviewed, reporters mentioned education of, or interaction with, local professionals in only 14 (33%), and four out of 10 organisations studied had no mention of the local providers in any article. Conclusions Although non-profit organisations emphasise the teaching and programme-building aspects of their efforts, media reports largely focus on simpler and more emotional stories such as patient successes or large donations. Acknowledgement of the clinical and financial contributions of the host countries is both a duty following from the principle of justice and an important factor in long-term programme building.
EEG-fTCD hybrid brain–computer interface using template matching and wavelet decomposition

Objective. We aim at developing a hybrid brain–computer interface that utilizes electroencephalography (EEG) and functional transcranial Doppler (fTCD). In this hybrid BCI, EEG and fTCD are used simultaneously to measure electrical brain activity and cerebral blood velocity respectively in response to flickering mental rotation (MR) and word generation (WG) tasks. In this paper, we improve both the accuracy and information transfer rate (ITR) of this novel hybrid brain computer interface (BCI) we designed in our previous work. Approach. To achieve such aim, we extended our feature extraction approach through using template matching and multi-scale analysis to extract EEG and fTCD features, respectively. In particular, template matching was used to analyze EEG data whereas 5-level wavelet decomposition was applied to fTCD data. Significant EEG and fTCD features were selected using Wilcoxon signed rank test. Support vector machines classifier (SVM) was used to project EEG and fTCD selected features of each trial into scalar SVM scores. Moreover, instead of concatenating EEG and fTCD feature vectors corresponding to each trial, we proposed a Bayesian fusion approach of EEG and fTCD evidences. Main results. Average accuracy and average ITR of 98.11% and 21.29 bits min−1 were achieved for WG versus MR classification while MR versus baseline yielded 86.27% average accuracy and 8.95 bit min−1 average ITR. In addition, average accuracy of 85.29% and average ITR of 8.34 bits min−1 were obtained for WG versus baseline. Significance. The proposed analysis techniques significantly improved the hybrid BCI performance. Specifically, for MR/WG versus baseline problems, we achieved twice of the ITRs obtained in our previous study. Moreover, the ITR of WG versus MR problem is 4-times the ITR we obtained before for the same problem. The current analysis methods boosted the performance of our EEG-fTCD BCI such that it outperformed the existing EEG-fNIRS BCIs in comparison.