Miracle-dz/UniFAR-FTUs huggingface dataset:
Effect of surfactant redistribution on the flow and stability of foam films

The viscous froth model for two-dimensional (2D) dissipative foam rheology is combined with Marangoni-driven surfactant redistribution on a foam film. The model is used to study the flow of a 2D foam system consisting of one bubble partially filling a constricted channel and a single spanning film connecting it to the opposite channel wall. Gradients of surface tension arising from film deformation induce tangential flow that redistributes surfactant along the film. This redistribution, and the consequent changes in film tension, inhibit the structure from undergoing a foam-destroying topological change in which the spanning film leaves the bubble behind; foam stability is thereby increased. The system’s behaviour is categorized by a Gibbs–Marangoni parameter, representing the ratio between the rate of motion in tangential and normal directions. Larger values of the Gibbs–Marangoni parameter induce greater variation in surface tension, increase the rate of surfactant redistribution and reduce the likelihood of topological changes. An intermediate regime is, however, identified in which the Gibbs–Marangoni parameter is large enough to create a significant gradient of surface tension but is not great enough to smooth out the flow-induced redistribution of surfactant entirely, resulting in non-monotonic variation in the bubble height, and hence in foam stability.
In vitro and computational modelling of drug delivery across the outer blood–retinal barrier

The ability to produce rapid, cost-effective and human-relevant data has the potential to accelerate the development of new drug delivery systems. Intraocular drug delivery is an area undergoing rapid expansion, due to the increase in sight-threatening diseases linked to increasing age and lifestyle factors. The outer blood–retinal barrier (OBRB) is important in this area of drug delivery, as it separates the eye from the systemic blood flow. This study reports the development of complementary in vitro and in silico models to study drug transport from silicone oil across the OBRB. Monolayer cultures of a human retinal pigmented epithelium cell line, ARPE-19, were added to chambers and exposed to a controlled flow to simulate drug clearance across the OBRB. Movement of dextran molecules and release of ibuprofen from silicone oil in this model were measured. Corresponding simulations were developed using COMSOL Multiphysics computational fluid dynamics software and validated using independent in vitro datasets. Computational simulations were able to predict dextran movement and ibuprofen release, with all of the features of the experimental release profiles being observed in the simulated data. Simulated values for peak concentrations of permeated dextran and ibuprofen released from silicone oil were within 18% of the in vitro results. This model could be used as a predictive tool for drug transport across this important tissue.
Generation of a three-dimensional collagen scaffold-based model of the human endometrium

The endometrium is the secretory lining of the uterus that undergoes dynamic changes throughout the menstrual cycle in preparation for implantation and a pregnancy. Recently, endometrial organoids (EO) were established to study the glandular epithelium. We have built upon this advance and developed a multi-cellular model containing both endometrial stromal and epithelial cells. We use porous collagen scaffolds produced with controlled lyophilization to direct cellular organization, integrating organoids with primary isolates of stromal cells. The internal pore structure of the scaffold was optimized for stromal cell culture in a systematic study, finding an optimal average pore size of 101 µm. EO seeded organize to form a luminal-like epithelial layer, on the surface of the scaffold. The cells polarize with their apical surface carrying microvilli and cilia that face the pore cavities and their basal surface attaching to the scaffold with the formation of extracellular matrix proteins. Both cell types are hormone responsive on the scaffold, with hormone stimulation resulting in epithelial differentiation and stromal decidualization.
Applications of novel bioreactor technology to enhance the viability and function of cultured cells and tissues

As the field of tissue engineering continues to advance rapidly, so too does the complexity of cell culture techniques used to generate in vitro tissue constructs, with the overall aim of mimicking the in vivo microenvironment. This complexity typically comes at a cost with regards to the size of the equipment required and associated expenses. We have developed a small, low-cost bioreactor system which overcomes some of the issues of typical bioreactor systems while retaining a suitable scale for the formation of complex tissues. Herein, we have tested this system with three cell populations/tissues: the culture of hepatocellular carcinoma cells, where an improved structure and basic metabolic function is seen; the culture of human pluripotent stem cells, in which the cultures can form more heterogeneous tissues resembling the in vivo teratoma and ex vivo liver tissue slices, in which improved maintenance of cellular viability is seen over the 3 days tested. This system has the flexibility to be used for a variety of further uses and has the potential to provide a more accessible alternative to current bioreactor technologies.
Global reduction of in situ CO2 transfer velocity by natural surfactants in the sea-surface microlayer

For decades, the effect of surfactants in the sea-surface microlayer (SML) on gas transfer velocity (k) has been recognized; however, it has not been quantified under natural conditions due to missing coherent data on in situ k of carbon dioxide (CO2) and characterization of the SML. Moreover, a sea-surface phenomenon of wave-dampening, known as slicks, has been observed frequently in the ocean and potentially reduces the transfer of climate-relevant gases between the ocean and atmosphere. Therefore, this study aims to quantify the effect of natural surfactant and slicks on the in situ k of CO2. A catamaran, Sea Surface Scanner (S3), was deployed to sample the SML and corresponding underlying water, and a drifting buoy with a floating chamber was deployed to measure the in situ k of CO2. We found a significant 23% reduction of k above surfactant concentrations of 200 µg Teq l−1, which were common in the SML except for the Western Pacific. We conclude that an error of approximately 20% in CO2 fluxes for the Western Pacific is induced by applying wind-based parametrization not developed in low surfactant regimes. Furthermore, we observed an additional 62% reduction in natural slicks, reducing global CO2 fluxes by 19% considering known frequency of slick coverage. From our observation, we identified surfactant concentrations with two different end-members which lead to an error in global CO2 flux estimation if ignored.
Frequency-based Dissociation of Symbolic and Nonsymbolic Numerical Processing during Numerical Comparison

Abstract Recent evidence suggests that during numerical calculation, symbolic and nonsymbolic processing are functionally distinct operations. Nevertheless, both roughly recruit the same brain areas (spatially overlapping networks in the parietal cortex) and happen at the same time (roughly 250 msec poststimulus onset). We tested the hypothesis that symbolic and nonsymbolic processing are segregated by means of functionally relevant networks in different frequency ranges: high gamma (above 50 Hz) for symbolic processing and lower beta (12–17 Hz) for nonsymbolic processing. EEG signals were quantified as participants compared either symbolic numbers or nonsymbolic quantities. Larger EEG gamma-band power was observed for more difficult symbolic comparisons (ratio of 0.8 between the two numbers) than for easier comparisons (ratio of 0.2) over frontocentral regions. Similarly, beta-band power was larger for more difficult nonsymbolic comparisons than for easier ones over parietal areas. These results confirm the existence of a functional dissociation in EEG oscillatory dynamics during numerical processing that is compatible with the notion of distinct linguistic processing of symbolic numbers and approximation of nonsymbolic numerical information.
Genome-Wide Association Mapping to Identify Genetic Loci for Cold Tolerance and Cold Recovery During Germination in Rice

Low temperature significantly affects rice growth and yield. Temperatures lower than 15°C are generally detrimental for germination and uniform seedling stand. To investigate the genetic architecture underlying cold tolerance during germination in rice, we conducted a genome-wide association study using a novel diversity panel of 257 rice accessions from around the world and the 7K SNP marker array. Phenotyping was conducted in controlled growth chambers under dark conditions at 13°C. The rice accessions were measured for low-temperature germinability, germination index, coleoptile length under cold stress, plumule length at 4-day recovery, and plumule length recovery rate. A total of 51 QTLs were identified at p < 0.001 and 17 QTLs were identified using an FDR < 0.05 across the different chilling indices with the whole panel of accessions. At the threshold of p < 0.001, a total of 20 QTLs were identified in the subset of japonica accessions, while 9 QTLs were identified in the subset of indica accessions. Considering the recurring SNPs and linked SNPs across different chilling indices, we identified 31 distinct QTL regions in the whole panel, 13 QTL regions in the japonica subset, and 7 distinct QTL regions in the indica subset. Among these QTL regions, three regions were common between the whole panel and japonica, three regions were common between the whole panel and indica, and one region was common between indica and japonica. A subset of QTL regions was potentially colocalized with previously identified genes and QTLs, including 10 from the japonica subset, 4 from the indica subset, and 6 from the whole panel. On the other hand, a total of 21 potentially novel QTL regions from the whole panel, 10 from the japonica subset, and 1 from the indica subset were identified. The results of our study provide useful information on the genetic architecture underlying cold tolerance during germination in rice, which in turn can be used for further molecular study and crop improvement for low-temperature stressed environments.
Determining Coral Density Thresholds for Identifying Structurally Complex Vulnerable Marine Ecosystems in the Deep Sea

Vulnerable marine ecosystems (VMEs) are at risk from the impacts of deep-sea trawling. Identifying the presence of VMEs in high seas fisheries management areas has to date relied mainly on presence records, or on habitat suitability models of VME indicator taxa (e.g., the stony coral species Solenosmilia variabilis Duncan, 1873) as proxies for the occurrence of VMEs (e.g., cold-water coral reefs). However, the presence or predicted presence of indicator taxa does not necessarily equate to the occurrence of a VME. There have been very few attempts to determine density thresholds of VME indicator taxa that relate to a “significant concentration” which supports a “high diversity” of associated taxa, as per the current criterion for identifying structurally complex VMEs (FAO, 2009). Without knowing such thresholds, identifications of VMEs will continue to be subjective, impeding efforts to design effective spatial management measures for VMEs. To address this issue, we used seafloor video and still image data from the Louisville Seamount Chain off New Zealand to model relationships between the densities of live Solenosmilia variabilis coral heads, as well as percent cover of live and dead coral matrix, and the number of other epifauna taxa present. Analyses were conducted at three spatial scales; 50 and 25 m2 for video, and 2 m2 for stills. Model curves exhibited initial steep positive responses reaching thresholds for the number of live coral heads at 0.11 m–2 (50 m2), 0.14 m–2 (25 m2), and 0.85 m–2 (2 m2). Both live and dead coral cover were positively correlated with the number of associated taxa up to about 30% cover, for all spatial scales (24.5–28%). We discuss the results in the context of past and future efforts to develop criteria for identifying VMEs.
Gas-Sensing Performances of Metal Oxide Nanostructures for Detecting Dissolved Gases: A Mini Review

Gas sensors have been wildly used in various fields related to people's lives. Gas sensor materials were the core factors that affected the performances of various gas sensors, and these have attracted much attention from scientific researchers due their high sensitivity, high selectivity, adjustable reliability, low cost, and other advantages. The preparation of nanostructures with a highly specific surface area was a useful method to improve the gas-sensing performance of a metal oxide semiconductor. Meanwhile, lots of research has focused on preparing nanostructures with a highly specific surface area. This paper has explored some fabricated sensors with high sensitivity, good selectivity, and long-term stability, which has also made them promising candidates for toxic gas detection. Besides, this paper has reviewed the development status of metal oxides used as gas sensors.
Effect of Acute Moderate-Intensity Exercise on the Mirror Neuron System: Role of Cardiovascular Fitness Level

Objectives The aims of this study were to use functional near-infrared spectroscopy (fNIRS) to determine whether cardiovascular fitness levels modulate the activation of the mirror neuron system (MNS) under table-setting tasks in non-exercise situation, to replicate the study that positive effect of acute moderate-intensity exercise on the MNS and investigate whether cardiovascular fitness levels modulates the effect of exercise on the activation of the MNS. Methods Thirty-six healthy college-aged participants completed a maximal graded exercise test (GXT) and were categorized as high, moderate, or low cardiovascular fitness. Participants then performed table-setting tasks including an action execution task (EXEC) and action observation task (OBS) prior to (PRE) and after (POST) either a rest condition (CTRL) or a cycling exercise condition (EXP). The EXP condition consisted of a 5-min warm-up, 15-min moderate-intensity exercise (65% VO2max), and 5-min cool-down. Results No significant differences were observed for Oxy-Hb and Deoxy-Hb between different cardiovascular fitness levels in the EXEC or OBS tasks in the non-exercise session. But there were significant improvements of oxygenated hemoglobin (Oxy-Hb) in the inferior frontal gyrus (IFG) and pre-motor area (PMC) regions under the OBS task following the acute moderate exercise. Particularly, the improvements (Post-Pre) of Δ Oxy-Hb were mainly observed in high and low fitness individuals. There was also a significant improvement of deoxygenated hemoglobin (Deoxy-Hb) in the IPL region under the OBS task. The following analysis indicated that exercise improved Δ Deoxy-Hb in high fitness individuals. Conclusion This study indicated that the activation of MNS was not modulated by the cardiovascular fitness levels in the non-exercise situation. We replicated the previous study that moderate exercise improved activation of MNS; we also provided the first empirical evidence that moderate-intensity exercise positively affects the MNS activation in college students of high and low cardiovascular fitness levels.
Bone Marrow-Derived and Elicited Peritoneal Macrophages Are Not Created Equal: The Questions Asked Dictate the Cell Type Used

Macrophages are a heterogeneous and plastic population of cells whose phenotype changes in response to their environment. Macrophage biologists utilize peritoneal (pMAC) and bone marrow-derived macrophages (BMDM) for in vitro studies. Given that pMACs mature in vivo while BMDM are ex vivo differentiated from stem cells, it is likely that their responses differ under experimental conditions. Surprisingly little is known about how BMDM and pMACs responses compare under the same experimental conditionals. While morphologically similar with respect to forward and side scatter by flow cytometry, reports in the literature suggest that pMACs are more mature than their BMDM counterparts. Given the dearth of information comparing BMDM and pMACs, this work was undertaken to test the hypothesis that elicited pMACs are more responsive to defined conditions, including phagocytosis, respiratory burst, polarization, and cytokine and chemokine release. In all cases, our hypothesis was disproved. At steady state, BMDM are more phagocytic (both rate and extent) than elicited pMACs. In response to polarization, they upregulate chemokine and cytokine gene expression and release more cytokines. The results demonstrate that BMDM are generally more responsive and poised to respond to their environment, while pMAC responses are, in comparison, less pronounced. BMDM responses are a function of intrinsic differences, while pMAC responses reflect their differentiation in the context of the whole animal. This distinction may be important in knockout animals, where the pMAC phenotype may be influenced by the absence of the gene of interest.
Exploring Sources and Biogeochemical Dynamics of Dissolved Methane in the Central Bohai Sea in Summer

To clarify the sources and biogeochemical dynamics of dissolved methane (CH4) in shallow-water coastal oceans, we investigated the concentrations, sea-to-air fluxes, and net cycling rate of CH4 in the central Bohai Sea in summer 2018. During the survey, both summertime stratification and dissolved oxygen (DO) deficit were observed. In the surface layer, CH4 concentration ([CH4]) ranged from 3.08 to 10.27 nmol kg–1. The average sea-to-air flux was estimated at 6.46 ± 3.32 μmol m–2 d–1, indicating that the Bohai Sea serves as a source of atmospheric CH4. In the bottom layer, [CH4] ranged from 4.29 to 31.04 nmol kg–1. The downward increase in [CH4] within the water column indicated substantial sources of CH4 in the seafloor. Based on the complex relationship between the saturation ratio of CH4 and DO, three types of CH4 release from the seafloor were identified, including diagenesis of buried organic matter, natural leakage from geological settings, and anthropogenic release from offshore oil/gas development. The saturation ratios of CH4 in bottom waters were positively correlated with the degree of stratification of the water column. Using a two-layer box model, sedimentary CH4 release rates at two oxygen-deficient stations were estimated to be 56.0–60.8 μmol m–2 d–1, which was much higher than the sea-to-air fluxes. The modeling results also indicated that the majority of seafloor released CH4 (>90%) was consumed in the water column of this shallow-water coastal sea. This is the first comprehensive study on CH4 cycling in the Bohai Sea. This work shows the indicative role of DO in identifying multiple CH4 sources and highlights the dominance of water stratification and microbial consumption in local CH4 dynamics.
Host Records for Tortricidae (Lepidoptera) Reared from Seeds and Fruits in Panama

Abstract. A survey of Lepidoptera reared from seeds and fruits primarily on Barro Colorado Island, Panama, yielded 444 specimens of Tortricidae representing 20 species. Nearly 90% of reared tortricids and 65% of the species are members of the tribe Grapholitini, a group that includes numerous economically important pests of fruit worldwide. We present host records for the following species: Histura panamana Brown, Platynota obliqua Walsingham complex, Platynota subargentea Walsingham, Spinipogon triangularis Brown, Cryptaspasma perseana Gilligan and Brown, Steblopotamia streblopa (Meyrick), Cydia pyraspis (Meyrick) complex, Eriosocia guttifera (Meyrick), Riculorampha ancyloides Rota and Brown, Grapholita mabea Razowski, Ricula croceus Brown, Ricula lacistema Brown, Ricula sp. 1, Ricula sp. 2, Talponia sp. 1, Talponia sp. 2, and four unidentified Grapholitini. In a comparison of studies focused on fruit- and seed-feeding insects in Thailand, Panama, and Kenya, Grapholitini represented 73% (in Thailand) to 90% (in Panama) of the total number of reared specimens of Tortricidae, and 45% (in Kenya) to 65% (in Panama) of the total number of tortricid species. However, a similar survey in Papua New Guinea produced considerably different results, with Grapholitini representing 46% of the tortricid specimens and only 20% of the species.
Geographic Skull Variation of the Japanese Weasel, Mustela itatsi in Islands Adjacent to Southern Kyushu

Abstract. Skull morphology of Mustela itatsi from two islands adjacent to Kyushu, Kamikoshikijima and Yakushima Isls. , Kagoshima Prefecture were compared with populations from mainland Japan. Although size and shape variation of these island populations were within whole species range of variation, the size variation was less than that of some mainland populations. In contrast, canonical variate analysis showed a separation of the Yakushima population from other populations compared. Between these islands, skull shape was different, indicating that ecological difference such as prey size and abundance may exist. Island populations of M. itatsi could have been differentiated from mainland populations depending on different ecological conditions and geological history of each island.
Track analysis of the Neotropical species of Capparaceae

Abstract. The Capparaceae are a family of plants associated mainly with dry areas, which have produced climatic constraints and a limited geographic distribution. This family is considered endemic in the Neotropical seasonally dry forest (NSDF) and, therefore, a model to analyse the NSDF biogeography. We conducted a track analysis of Neotropical species of Capparaceae to identify generalised tracks that recover ancestral biotas of NSDF nuclei, employing 7602 data points for 104 species. Individual tracks were obtained using Prim’s algorithm and generalised tracks were identified using parsimony analysis of endemicity with progressive character elimination. We found six generalised tracks and four panbiogeographic nodes mainly located in the NSDF. Generalised tracks recovered the ancestral biotas of NSDF distributed among the central Andean coast, central inter-Andean valleys (Ecuador), Tarapoto–Quillabamba, Apurimac–Mantaro (Peru) and Piedmont (Bolivia) NSDF nuclei. Also, the pattern of distribution of Capparaceae recovered old connections between northern South America and the inter-Andean valleys. However, we also found generalised tracks located over the Isthmus of Panama and Amazonian–Magdalena valley moist forest, suggesting that the distribution pattern in this family was influenced not only by NSDF climatic constraints, but also by geological events such as the emergence of the Isthmus and Andean uplift.
Mothers of Pteridology

Abstract. Women have long been underrepresented in STEM, although there are certain fields within this umbrella that show less of a disparity — the biological sciences being one example. Within biology, pteridology has a rich history of female contributors involved since its inception. In this review we strive to highlight some of the foremost female pteridologists including Elizabeth Knight Britton, Alma Stokey, Irene Manton, Alice Tryon, Barbara Hoshizaki, and Florence Wagner. This is not an exhaustive list, but rather an insight into the strong maternal lineage of the fern and lycophyte community. While the field would not be the same without the work of many male pteridologists, herein we emphasize the important contributions that these founding women have made. Some of the research conducted by early female pteridologists was largely undermined by their time and circumstance; here we bring their lives and works to the foreground. Furthermore, we hope this paper inspires young botanists to enter our unique and historically rich field.