Miracle-dz/UniFAR-FTUs huggingface dataset:
The Effect of the Intraoperative Blood Loss and Intraoperative Blood Transfusion on the Short-Term Outcomes and Prognosis of Colorectal Cancer: A Propensity Score Matching Analysis

Purpose The purpose of the current study was to analyze the effect of intraoperative blood loss (IBL) and intraoperative blood transfusion (IBT) on the short-term outcomes and prognosis for patients who underwent primary colorectal cancer (CRC) surgery. Methods We retrospectively collected the patients' information from the database of a teaching hospital from January 2011 to January 2020. IBL and IBT were collected and analyzed, and the propensity score matching (PSM) analysis was performed. Results A total of 4,250 patients with CRC were included in this study. There were 1,911 patients in the larger IBL group and 2,339 patients in the smaller IBL group. As for IBT, there were 82 patients in the IBT group and 4,168 patients in the non-IBT group. After 1:1 ratio PSM, there were 82 patients in the IBT group and 82 patients in the non-IBT group. The larger IBL group had longer operation time (p = 0.000 < 0.01), longer post-operative hospital stay (p = 0.000 < 0.01), smaller retrieved lymph nodes (p = 0.000 < 0.01), and higher overall complication (p = 0.000 < 0.01) than the smaller IBL group. The IBT group had longer operation time (p = 0.000 < 0.01), longer hospital stay (p = 0.016 < 0.05), and higher overall complications (p = 0.013 < 0.05) compared with the non-IBT group in terms of short-term outcomes. Larger IBL (p = 0.000, HR = 1.352, 95% CI = 1.142–1.601) and IBT (p = 0.044, HR = 1.487, 95% CI = 1.011–2.188) were independent predictive factors of overall survival (OS). Larger IBL (p = 0.000, HR = 1.338, 95% CI = 1.150–1.558) was an independent predictor of disease-free survival (DFS); however, IBT (p = 0.179, HR = 1.300, 95% CI = 0.886–1.908) was not an independent predictor of DFS. Conclusion Based on the short-term outcomes and prognosis of IBL and IBT, surgeons should be cautious during the operation and more careful and proficient surgical skills are required for surgeons.
AMOC Recent and Future Trends: A Crucial Role for Oceanic Resolution and Greenland Melting?

The Atlantic Meridional Overturning Circulation (AMOC) is a crucial element of the Earth climate. It is a complex circulation system difficult to monitor and to model. There is considerable debate regarding its evolution over the last century as well as large uncertainty about its fate at the end of this century. We depict here the progress since the IPCC SROCC report, offering an update of its chapter 6.7. We also show new results from a high-resolution ocean model and a CMIP6 model to investigate the impact of Greenland Ice Sheet (GrIS) melting, a key uncertainty for past and future AMOC changes. The ocean-only simulation at 1/24° resolution in the Arctic-North Atlantic Ocean performed over the period 2004–2016 indicates that the spread of the Greenland freshwater runoff toward the center of the Labrador Sea, where oceanic convection occurs, seems larger in this model than in a CMIP6 model. Potential explanations are related to the model spatial resolution and the representation of mesoscale processes, which more realistically transport the freshwater released around the shelves and, through eddies, provides strong lateral exchanges between the fine-scale boundary current and the convective basin in the Labrador Sea. The larger freshening of the Labrador Sea in the high-resolution model then strongly affects deep convection activity. In the simulation including GrIS melting, the AMOC weakens by about 2 Sv after only 13 years, far more strongly than what is found in the CMIP6 model. This difference raises serious concerns on the ability of CMIP6 models to correctly assess the potential impact of GrIS melting on the AMOC changes over the last few decades as well as on its future fate. To gain confidence in the GrIS freshwater impacts on climate simulations and therefore in AMOC projections, urgent progress should be made on the parameterization of mesoscale processes in ocean models.
Assessment of Saliva Specimens' Reliability for COVID-19 Surveillance

The aim of the present study is to assess saliva as a reliable specimen for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) detection by real-time reverse transcription-PCR (RT-PCR), especially in community mass screening programs. The performance analysis considered 1,221 total samples [nasopharyngeal (NP) swabs and corresponding saliva], tested by means of a reference diagnostic real-time RT-PCR assay. Conflicting results were further investigated with a second, more sensitive, reference assay. Analysis of agreement showed a good concordance (95.82%), with a k coefficient value of.74 (p < 0.001); moreover, a follow-up analysis revealed the presence of viral gene targets in saliva samples at the time point the corresponding NP swabs turned negative. Data obtained prove the reliability of this alternative biofluid for SARS-CoV-2 detection in real-time RT-PCR. Considering the role of saliva in the coronavirus disease 2019 (COVID-19) transmission and pathogenesis, and the advantages in the use of salivary diagnostics, the present validation supports the use of saliva as an optimal choice in large-scale population screening and monitoring of the SARS-CoV-2 virus.
Lessons From the Commercial Failure of Project Loon for 6G Research Roadmap Design

Currently, the sixth-generation (6G) communication research roadmap is being frequently discussed and designed, in which, undoubtedly, aerial telecommunication infrastructures play crucial roles for boosting transmission capacity, enlarging coverage, and democratizing the benefits of information and communications technology (ICT) over the globe. However, the sudden news released in January 2021 that Alphabet is shutting down Project Loon, one of the most important projects enabling communications over aerial infrastructures, surprises the academia of communications science. There is no question that the failure of Project Loon will yield profound impacts on and even shift the current 6G research roadmap design. The latent mismatch between academia and industry in communication science should also raise adequate attention. Therefore, in this article, we analyze the commercial failure of Project Loon by public information from reliable sources and summarize a series of important lessons for the 6G research roadmap design.
Dreading Yet Hoping: Traumatic Loss Impacted by Reference DNA Sample Collection for Families of Missing People

The trauma of having a family member missing is commonly described as an ambiguous loss where the finality of the loss is not realized, as is experienced with a death. There is uncertainty due to the trauma of the absence and subsequent police investigation, leading to physical and emotional impacts for the aftercare of those left behind. There are 850 unidentified human remains and 2,600 long-term missing persons cases in Australia. The Australian Federal Police (AFP) National DNA Program for Unidentified and Missing Persons aims to scientifically link these cases using modern DNA techniques and databases. A DNA-led identification effort may assist to provide answers to Australian families searching for missing relatives, but may also contribute to the trauma experienced by these families. A literature review demonstrated empirical research for the development of scientific best practices for the collection of reference DNA samples for forensic purposes, but minimal evidence about the impact of reference DNA sample collection on kin when attempting to identify the deceased remains of missing people in non-mass casualty situations. The aim of this study was to develop an academically robust understanding of the unique impact of reference DNA sample collection on families of missing persons and support pathways tailored to the experience. This study involved 26 Australian families of long-term missing (ranging from 1 to 20+ years) people in Australia anonymously completing a mixed-methods online survey about their experiences of providing reference DNA samples to aid missing persons investigations. Respondents were representative of a range of ages, genders and relationships to the missing individual. The thematic analysis of the survey results identified the provision of a reference DNA sample: (1) resembles an overt act of hope as families perceive their sample assists the investigation, whilst also being traumatic, triggered by the prospect of scientifically matching their missing family member to a set of unknown human remains; (2) can cause immediate interpersonal impacts and ongoing impacts to families' wellbeing; and (3) can be improved by considering the environment where the sample is collected, professionalism of the police officer collecting the sample, timeliness of the provision of the sample, level of support provided during and after sample collection, and effective communication of forensic procedures and processes as they relate to the missing persons investigation. The study concludes that the complexity associated with provision of family reference samples requires the development and implementation of best practice guidelines, including psycho-education strategies to be used by practitioners to minimize the vicarious trauma for relatives already traumatized by the loss of their missing family member. These guidelines would support the objectives of the AFP Program and benefit all routine missing persons investigations.
The Response of North Sea Ecosystem Functional Groups to Warming and Changes in Fishing

Achieving Good Environmental Status (GES) requires managing ecosystems subject to a variety of pressures such as climate change, eutrophication, and fishing. However, ecosystem models are generally much better at representing top-down impacts from fishing than bottom-up impacts due to warming or changes in nutrient loading. Bottom-up processes often have to be parameterised with little data or worse still taken as a system input rather than being represented explicitly. In this study we use an end-to-end ecosystem model (StrathE2E2) for the North Sea with 18 broad functional groups, five resource pools, and representations of feeding, metabolism, reproduction, active migrations, advection, and mixing. Environmental driving data include temperature, irradiance, hydrodynamics, and nutrient inputs from rivers, atmosphere, and ocean boundaries, so the model is designed to evaluate rigorously top-down and bottom-up impacts and is ideal for looking at possible changes in energy flows and “big picture” ecosystem function. In this study we considered the impacts of warming (2 and 4°C) and various levels of fishing, by demersal and pelagic fleets, on the structure and function of the foodweb. A key aim is to demonstrate whether monitoring of broad ecosystem groups could assist in deciding whether GES was being achieved. We found that warming raised primary productivity and increased the size (total biomass) of the ecosystem. Warming raised metabolic demands on omnivorous zooplankton and reduced their abundance, thus favouring benthivorous and piscivorous demersal fish at the expense of planktivorous pelagic fish but otherwise had modest effects on energy pathways and top predators, whereas changes in fishing patterns could materially alter foodweb function and the relative outcomes for top predators. We suggest that GES should be defined in terms of an unfished state and that abundances of broad groupings and the balance between them can help to assess whether indicator outcomes were consistent with GES. Our findings underwrite the need for an ecosystem approach for the management of human activities supported by relevant monitoring. We also highlight the need to improve our basic understanding of bottom-up processes, improve their representation within models, and ensure that our ecosystem models can capture growth limitation by nitrogen and other elements, and not just food/energy uptake.
Identification of tRNA-Related Fragments and Their Potential Regulatory Effects in Thyroid-Associated Ophthalmopathy

Recently, the potential role of tRNA-related fragments (tRFs) in ophthalmic diseases has been extensively researched. However, systematic studies on the potential regulatory effects of tRFs in thyroid-associated ophthalmopathy (TAO) are lacking. We used high-throughput sequencing techniques to measure expression levels of mRNAs and tRFs in patients with TAO, and the results were verified by real-time quantitative reverse transcription polymerase chain reaction (q-PCR). Next, the potential biological regulatory effect of differentially expressed tRFs was analyzed, and potential downstream target RNAs of differentially expressed tRFs were predicted to explore the potential role of tRFs as therapeutic targets and biomarkers of TAO. A total of 50 tRFs and 361 mRNAs were dysregulated in the TAO group, and tRF5-GluCTC, PMAIP1, HSD17B2 and ATF3 were verified to be significantly differentially expressed in TAO. Our research reveals that several associated pathways likely play a role in the pathogenesis of TAO. By targeting ATF3, HSD17B2 and PMAIP1, tRF5-GluCTC may play a potential role in regulating the orbital fibroblast adipogenic response and fibrotic hyperplasia in patients with TAO.
Knockdown of a Cyclic Nucleotide-Gated Ion Channel Impairs Locomotor Activity and Recovery From Hypoxia in Adult Drosophila melanogaster

Cyclic guanosine monophosphate (cGMP) modulates the speed of recovery from anoxia in adult Drosophila and mediates hypoxia-related behaviors in larvae. Cyclic nucleotide-gated channels (CNG) and cGMP-activated protein kinase (PKG) are two cGMP downstream targets. PKG is involved in behavioral tolerance to hypoxia and anoxia in adults, however little is known about a role for CNG channels. We used a CNGL (CNG-like) mutant with reduced CNGL transcripts to investigate the contribution of CNGL to the hypoxia response. CNGL mutants had reduced locomotor activity under normoxia. A shorter distance travelled in a standard locomotor assay was due to a slower walking speed and more frequent stops. In control flies, hypoxia immediately reduced path length per minute. Flies took 30–40 min in normoxia for >90% recovery of path length per minute from 15 min hypoxia. CNGL mutants had impaired recovery from hypoxia; 40 min for ∼10% recovery of walking speed. The effects of CNGL mutation on locomotor activity and recovery from hypoxia were recapitulated by pan-neuronal CNGL knockdown. Genetic manipulation to increase cGMP in the CNGL mutants increased locomotor activity under normoxia and eliminated the impairment of recovery from hypoxia. We conclude that CNGL channels and cGMP signaling are involved in the control of locomotor activity and the hypoxic response of adult Drosophila.
Vaccine-Associated Enhanced Disease and Pathogenic Human Coronaviruses

Vaccine-associated enhanced disease (VAED) is a difficult phenomenon to define and can be confused with vaccine failure. Using studies on respiratory syncytial virus (RSV) vaccination and dengue virus infection, we highlight known and theoretical mechanisms of VAED, including antibody-dependent enhancement (ADE), antibody-enhanced disease (AED) and Th2-mediated pathology. We also critically review the literature surrounding this phenomenon in pathogenic human coronaviruses, including MERS-CoV, SARS-CoV-1 and SARS-CoV-2. Poor quality histopathological data and a lack of consistency in defining severe pathology and VAED in preclinical studies of MERS-CoV and SARS-CoV-1 vaccines in particular make it difficult to interrogate potential cases of VAED. Fortuitously, there have been only few reports of mild VAED in SARS-CoV-2 vaccination in preclinical models and no observations in their clinical use. We describe the problem areas and discuss methods to improve the characterisation of VAED in the future.
Monitoring Autophagy at Cellular and Molecular Level in Crassostrea gigas During an Experimental Ostreid Herpesvirus 1 (OsHV-1) Infection

Mortality outbreaks of young Pacific oysters, Crassostrea gigas, have seriously affected the oyster-farming economy in several countries around the world. Although the causes of these mortality outbreaks appear complex, a viral agent has been identified as the main factor: a herpesvirus called ostreid herpesvirus 1 (OsHV-1). Autophagy is an important degradation pathway involved in the response to several pathologies including viral diseases. In C. gigas, recent studies indicate that this pathway is conserved and functional in at least haemocytes and the mantle. Furthermore, an experimental infection in combination with compounds known to inhibit or induce autophagy in mammals revealed that autophagy is involved in the response to OsHV-1 infection. In light of these results, the aim of this study was to determine the role of autophagy in the response of the Pacific oyster to infection by virus OsHV-1. For this purpose, an experimental infection in combination with a modulator of autophagy was performed on Pacific oysters known to have intermediate susceptibility to OsHV-1 infection. In haemolymph and the mantle, the autophagy response was monitored by flow cytometry, western blotting, and real-time PCR. At the same time, viral infection was evaluated by quantifying viral DNA and RNA amounts by real-time PCR. Although the results showed activation of autophagy in haemolymph and the mantle 14 hours post infection (after viral replication was initiated), they were also indicative of different regulatory mechanisms of autophagy in the two tissues, thus supporting an important function of autophagy in the response to virus OsHV-1.
Mycorrhizal Mediated Partitioning of Phosphorus: Ectomycorrhizal (Populus x canescens x Paxillus involutus) Potential to Exploit Simultaneously Organic and Mineral Phosphorus Sources

Many natural and anthropogenic soils are phosphorus (P) limited often due to larger P stocks sequestered in forms of low bioavailability. One of the strategies to overcome this shortage lies in the symbiosis of plants with mycorrhizal fungi, increasing the plant P uptake of these hardly accessible sources. However, little is known about mycorrhizal fungal mediated partitioning of differently available P forms, which could contribute to more efficient use of P by plants and, thereby, reduce competition for soil P. This study aimed to investigate the uptake of P from differently bioavailable P sources by ectomycorrhiza. For that, we conducted a rhizotrone study using Populus x canescens and its compatible ectomycorrhizal fungus Paxillus involutus. Four different P sources [ortho-phosphate (oP), adenosine monophosphate (AMP), hydroxyapatite (HAP), and oP bound to goethite (gP)] or only HAP as 1P control were supplied in separate compartments, where only the fungal partner had access to the P sources. The amount of the specific P sources was increased according to their decreasing bioavailability. In order to distinguish between the P sources, we applied 33P to track its incorporation in plants by a non-destructive analysis via digital autoradiography. Our results show that an ectomycorrhizal plant is able to utilize all provided P sources via its mycorrhizal fungal associate. The acquisition timing was determined by the most bioavailable P sources, with oP and AMP over HAP and gP, and a mixed P pool over a single P source. In contrast, the magnitude was defined by the by the amount of supplied P source provision of additional nitrogen, hence AMP over oP and gP, as well as by P source complexity, with gP as the least favorable P form. Nevertheless, the results of the present study provide evidence that an ectomycorrhiza has the potential to occupy fundamental niches of various P sources differing in their bioavailability, indicating that being a generalist in P nutrition can facilitate adaptation to various nutritional settings in soil.
Signaling Pathways That Mediate Alveolar Macrophage Activation by Surfactant Protein A and IL-4

Activation of tissue repair program in macrophages requires the integration of IL-4/IL-13 cytokines and tissue-specific signals. In the lung, surfactant protein A (SP-A) is a tissue factor that amplifies IL-4Rα-dependent alternative activation and proliferation of alveolar macrophages (AMs) through the myosin18A receptor. However, the mechanism by which SP-A and IL-4 synergistically increase activation and proliferation of AMs is unknown. Here we show that SP-A amplifies IL-4-mediated phosphorylation of STAT6 and Akt by binding to myosin18A. Blocking PI3K activity or the myosin18A receptor abrogates SP-A´s amplifying effects on IL-4 signaling. SP-A alone activates Akt, mTORC1, and PKCζ and inactivates GSK3α/β by phosphorylation, but it cannot activate arginase-1 activity or AM proliferation on its own. The combined effects of IL-4 and SP-A on the mTORC1 and GSK3 branches of PI3K-Akt signaling contribute to increased AM proliferation and alternative activation, as revealed by pharmacological inhibition of Akt (inhibitor VIII) and mTORC1 (rapamycin and torin). On the other hand, the IL-4+SP-A-driven PKCζ signaling axis appears to intersect PI3K activation with STAT6 phosphorylation to achieve more efficient alternative activation of AMs. Consistent with IL-4+SP-A-driven activation of mTORC1 and mTORC2, both agonists synergistically increased mitochondrial respiration and glycolysis in AMs, which are necessary for production of energy and metabolic intermediates for proliferation and alternative activation. We conclude that SP-A signaling in AMs activates PI3K-dependent branched pathways that amplify IL-4 actions on cell proliferation and the acquisition of AM effector functions.
Crops Change the Morphology, Abundance, and Mass of Microplastics in Mollisols of Northeast China

Degradation of microplastics (MPs) by both physicochemical and biological processes in the natural environment is determined by the enzymes inside the soil, and which was severely influenced by crop growth and straw amendment (SA). However, it is still unclear how crop growth and SA influence degradation of MPs in soils. In this study, both catalase and sucrase were measured, and the stereomicroscope combined with microscopic infrared spectroscopy and scanning electron microscope (SEM) was used to detect the morphology and quantity of low-density polyethylene microplastic (LDPE-MP) and low-density polypropylene microplastic (LDPP-MP), after crop growth (maize and soybean, with and without SA, 1 and 2% MP) in an outdoor pot experiment, in the Mollisols. The results showed that the growth of the crops changed the morphology, functional groups (e.g., methylene, carbonyl), total mass, and abundance ratio of MPs of different sizes. These were possibly caused by enzymes that were significantly influenced by crop types, abundance, and types of MPs in the soils. Maize growth decreased the mass of LDPE-MP and LDPP-MP by 28.7 and 32.7%, respectively, and 2% (w/w) of LDPP-MP addition in soil decreased mass of 9%, which was higher than that in 1% (w/w) LDPP-MP addition in soil. Soybean growth with SA decreased the mass of LDPE-MP and LDPP-MP by 36.6 and 20.7%, respectively, than the control treatment (CK). Compared with CK, both crop growth and SA changed the abundance of MPs of different sizes and decreased the mean size of MPs. The LDPE-MP could be more easily degraded by enzymes in the soils compared to LDPP-MP when the MP size was smaller with surface roughness. Generally, both maize and soybean growth can accelerate MP change in soils, and MP change process was mainly determined by SA, MP types, and the dose effect of MP.