Miracle-dz/UniFAR-FTUs huggingface dataset:
Caveolin Regulates Kv1.5 Trafficking to Cholesterol-Rich Membrane Microdomains

The targeting of ion channels to cholesterol-rich membrane microdomains has emerged as a novel mechanism of ion channel localization. Previously, we reported that Kv1.5, a prominent cardiovascular K+ channel α-subunit, localizes to caveolar microdomains. However, the mechanisms regulating Kv1.5 targeting and the functional significance of this localization are largely unknown. In this study, we demonstrate a role for caveolin in the trafficking of Kv1.5 to lipid raft microdomains where cholesterol modulates channel function. In cells lacking endogenous caveolin-1 or -3, the association of Kv1.5 with low-density, detergent-resistant membrane fractions requires coexpression with exogenous caveolin, which can form channel-caveolin complexes. Caveolin is not required for cell surface expression, however, and caveolin-trafficking mutants sequester Kv1.5, but not Kv2.1, in intracellular compartments, resulting in a loss of functional cell surface channel. Coexpression with wild type caveolin-1 does not alter Kv1.5 current density; rather, it induces depolarizing shifts in steady-state activation and inactivation. These shifts are analogous to those produced by elevation of membrane cholesterol. Together, these results show that caveolin modulates channel function by regulating trafficking to cholesterol-rich membrane microdomains.
Step by step male to female transsexual surgery

ABSTRACT Introduction After the diagnosis of transsexualism is confirmed therapy commences with psychotherapeutic preparation for the conversion, and after conversion, long-term patient rehabilitation is maintained for at least two years. The indication for surgery is chronic discomfort caused by discord with the patient's natural gender, intense dislike of developing secondary sex characteristics and the onset of puberty. The surgical conversion of transsexuals is the main step in the complex care of these problematic patients (1). This surgery was first described by Benjamin H, using a flap of inverted penile skin (2) and is considered the gold standard since then. Male-to-female transsexual surgical techniques are well defined and give good cosmetic and functional results. Sex reassignment surgery promotes the improvement of psychological aspects and social relationships as shown in the World Health Organization Quality of Life Assessment applied in the patients submitted to this procedure (3). Techniques include the creation of a normal appearing female introitus, a vaginoplasty allowing sexual intercourse and the capability of clitoral orgasm (4). Various methods for neovaginoplasty have been described and can be classified into five categories, i.e. pedicled intestinal transplants, penile skin grafts, penile skin flaps, non-genital skin flaps and non-genital skin grafts (5). In our Hospital, we use penile and scrotal skin flaps. Until now, 174 procedures have been performed by our team using this technique with high rates of satisfaction (3). Patients and methods We present a step-by-step male to female transsexual surgery. Conclusion Surgical gender reassignment of male transsexuals resulted in replicas of female genitalia which enabled coitus with orgasm (1). With this video we show step by step that a surgery using penile skin flaps is able to be performed with good cosmetic results.
Antihyperglycemic and Antihyperlipidemic Activity of Hydroponic Stevia rebaudiana Aqueous Extract in Hyperglycemia Induced by Immobilization Stress in Rabbits

Diabetes mellitus (DM) is a serious worldwide problem related to human hyperglycemia. Thus, herbal preparations with antihyperglycemic properties especially leaf extracts of hydroponic Stevia rebaudiana (SR) would be useful in hyperglycemia treatment. The antihyperglycemic potential of this medicinal plant grown using hydroponics methods has been evaluated. Significant reduction of some biochemical characteristics for sugars and fatty acids in blood, liver, and muscle especially fasting glucose levels, serum triglycerides, LDL-cholesterol, total cholesterol levels, and increased HDL-cholesterol ones was shown with SR aqueous extract treatment. Therefore, the aqueous extract of SR is suggested to have antihyperglycemic and antihyperlipidemic activity and to restore liver and muscle glycogen levels (hepatoprotective effects) in hyperglycemia induced by immobilization stress in rabbits and might be recommended for treatment of DM (hyperglycemia).
A New Anode for Lithium-Ion Batteries Based on Single-Walled Carbon Nanotubes and Graphene: Improved Performance through a Binary Network Design.

Carbon nanomaterials, especially graphene and carbon nanotubes, are considered to be favorable alternatives to graphite-based anodes in lithium-ion batteries, owing to their high specific surface area, electrical conductivity, and excellent mechanical flexibility. However, the limited number of storage sites for lithium ions within the sp2 -carbon hexahedrons leads to the low storage capacity. Thus, rational structure design is essential for the preparation of high-performance carbon-based anode materials. Herein, we employed flexible single-walled carbon nanotubes (SWCNTs) with ultrahigh electrical conductivity as a wrapper for 3D graphene foam (GF) by using a facile dip-coating process to form a binary network structure. This structure, which offered high electrical conductivity, enlarged the electrode/electrolyte contact area, shortened the electron-/ion-transport pathways, and allowed for efficient utilization of the active material, which led to improved electrochemical performance. When used as an anode in lithium-ion batteries, the SWCNT-GF electrode delivered a specific capacity of 953 mA h g-1 at a current density of 0.1 A g-1 and a high reversible capacity of 606 mA h g-1 after 1000 cycles, with a capacity retention of 90 % over 1000 cycles at 1 A g-1 and 189 mA h g-1 after 2200 cycles at 5 A g-1 .
Incremental Support Vector Learning for Ordinal Regression

Support vector ordinal regression (SVOR) is a popular method to tackle ordinal regression problems. However, until now there were no effective algorithms proposed to address incremental SVOR learning due to the complicated formulations of SVOR. Recently, an interesting accurate on-line algorithm was proposed for training ν-support vector classification (ν-SVC), which can handle a quadratic formulation with a pair of equality constraints. In this paper, we first present a modified SVOR formulation based on a sum-of-margins strategy. The formulation has multiple constraints, and each constraint includes a mixture of an equality and an inequality. Then, we extend the accurate on-line ν-SVC algorithm to the modified formulation, and propose an effective incremental SVOR algorithm. The algorithm can handle a quadratic formulation with multiple constraints, where each constraint is constituted of an equality and an inequality. More importantly, it tackles the conflicts between the equality and inequality constraints. We also provide the finite convergence analysis for the algorithm. Numerical experiments on the several benchmark and real-world data sets show that the incremental algorithm can converge to the optimal solution in a finite number of steps, and is faster than the existing batch and incremental SVOR algorithms. Meanwhile, the modified formulation has better accuracy than the existing incremental SVOR algorithm, and is as accurate as the sum-of-margins based formulation of Shashua and Levin.
Examining credentialing criteria and poor performance indicators for IROC Houston's anthropomorphic head and neck phantom.

PURPOSE To analyze the most recent results of the Imaging and Radiation Oncology Core Houston Quality Assurance Center's (IROC-H) anthropomorphic head and neck (H&N) phantom to determine the nature of failing irradiations and the feasibility of altering credentialing criteria. METHODS IROC-H's H&N phantom, used for intensity-modulated radiation therapy credentialing for National Cancer Institute-sponsored clinical trials, requires that an institution's treatment plan agrees within ±7% of measured thermoluminescent dosimeter (TLD) doses; it also requires that ≥85% of pixels pass ±4 mm distance to agreement (7%/4 mm gamma analysis for film). The authors re-evaluated 156 phantom irradiations (November 1, 2014-October 31, 2015) according to the following tighter criteria: (1) 5% TLD and 5%/4 mm, (2) 5% TLD and 5%/3 mm, (3) 4% TLD and 4%/4 mm, and (4) 3% TLD and 3%/3 mm. Failure rates were evaluated with respect to individual film and TLD performance by location in the phantom. Overall poor phantom results were characterized qualitatively as systematic errors (correct shape and position but wrong magnitude of dose), setup errors/positional shifts, global but nonsystematic errors, and errors affecting only a local region. RESULTS The pass rate for these phantoms using current criteria was 90%. Substituting criteria 1-4 reduced the overall pass rate to 77%, 70%, 63%, and 37%, respectively. Statistical analyses indicated that the probability of noise-induced TLD failure, even at the 5% criterion, was <0.5%. Phantom failures were generally identified by TLD (≥66% failed TLD, whereas ≥55% failed film), with most failures occurring in the primary planning target volume (≥77% of cases). Results failing current criteria or criteria 1 were primarily diagnosed as systematic >58% of the time (11/16 and 21/36 cases, respectively), with a greater extent due to underdosing. Setup/positioning errors were seen in 11%-13% of all failing cases (2/16 and 4/36 cases, respectively). Local errors (8/36 cases) could only be demonstrated at criteria 1. Only three cases of global errors were identified in these analyses. For current criteria and criteria 1, irradiations that failed from film only were overwhelmingly associated with phantom shifts/setup errors (≥80% of cases). CONCLUSIONS This study highlighted that the majority of phantom failures are the result of systematic dosimetric discrepancies between the treatment planning system and the delivered dose. Further work is necessary to diagnose and resolve such dosimetric inaccuracy. In addition, the authors found that 5% TLD and 5%/4 mm gamma criteria may be both practically and theoretically achievable as an alternative to current criteria.
Candida albicans and Pseudomonas aeruginosa Interact To Enhance Virulence of Mucosal Infection in Transparent Zebrafish

ABSTRACT Polymicrobial infections often include both fungi and bacteria and can complicate patient treatment and resolution of infection. Cross-kingdom interactions among bacteria, fungi, and/or the immune system during infection can enhance or block virulence mechanisms and influence disease progression. The fungus Candida albicans and the bacterium Pseudomonas aeruginosa are coisolated in the context of polymicrobial infection at a variety of sites throughout the body, including mucosal tissues such as the lung. In vitro, C. albicans and P. aeruginosa have a bidirectional and largely antagonistic relationship. Their interactions in vivo remain poorly understood, specifically regarding host responses in mediating infection. In this study, we examine trikingdom interactions using a transparent juvenile zebrafish to model mucosal lung infection and show that C. albicans and P. aeruginosa are synergistically virulent. We find that high C. albicans burden, fungal epithelial invasion, swimbladder edema, and epithelial extrusion events serve as predictive factors for mortality in our infection model. Longitudinal analyses of fungal, bacterial, and immune dynamics during coinfection suggest that enhanced morbidity is associated with exacerbated C. albicans pathogenesis and elevated inflammation. The P. aeruginosa quorum-sensing-deficient ΔlasR mutant also enhances C. albicans pathogenicity in coinfection and induces extrusion of the swimbladder. Together, these observations suggest that C. albicans-P. aeruginosa cross talk in vivo can benefit both organisms to the detriment of the host.
Performance analysis of non-regenerative relay assisted NOMA system

In this paper, the non-regenerative relay assisted non-orthogonal multiple access (NOMA) system is proposed to enlarge the cellular coverage area and to enhance the system performance. To investigate the proposed system's performance, the closed-form expressions in terms of the system capacity are derived. In an effort to evaluate the performance of the proposed system model, the comparison between NOMA and conventional orthogonal multiple access (OMA) approach is provided. Simulation results are presented to verify the accuracy of the derived analytical results. Additionally, it is demonstrated that the system capacity performance is enhanced by NOMA compared to the OMA encoding scheme in the non-regenerative relay assisted system.
Bridging Digital Divides in the Learning Process: Challenges and Implications of Integrating ICTs

Abstract: This paper investigates an initiative by a New Zealand School to integrate one-to-one ICTs into the learning process, called 'Bring your own device' (BYOD). Prior to embarking on the BYOD initiative, similar past initiatives have been studied and some persistent issues have been identified. Before starting with the detailed investigation of BYOD, a preliminary analysis of the public response data from different sources has also been conducted. From the past initiatives and preliminary analysis of public responses, we have been able to form general research questions for the study. A socio-cultural ecological approach to mobile learning has been considered appropriate as a means of analysis for this study. Authors: Janak Adhikari, Doctoral Student; Dr. David Parsons, Associate Professor and Dr. Anuradha Mathrani, Lecturer, in the department of Information Technology, Massey University Auckland. This paper was presented at mLearn 2012 Mobile and Contextual Learning, Helsinki, Finland, October 16 -18, 2012 and published in the Proceedings of the 11th International Conference on Mobile and Contextual Learning .
Determination of Magneto-crystalline Anisotropy Energy (MAE) Of ordered L10 CoPt and FePt nanoparticles

The structural and magnetic properties of both L10 ordered FePt and CoPt nanoparticles make them potential candidates for optical-electronic and magneto-optical devices. First, we carried out an ab initio total energy minimization study to find the geometrical optimization of both L10 phases of FePt and CoPt nanoparticles. Then, we investigated the magnetocrystalline anisotropy energy (MAE) of both systems along special line joining the points of high symmetry (A,B and C points) using super-cell slap approach with alternating layers Fe/Co and Pt along the (001) direction. We found that the point (A) has the highest MAE value for both systems, where the value of MAE in FePt is 8.89 × 107 erg/cm3 and in CoPt is 6.40 × 107 erg/cm3. Our spin density based calculations indicate that large spin-orbit interaction and the hybridization between Pt 5d states and Fe/Co 3d states are the dominant factors in determining the MAE in both systems.
Uncovering Steady Advances for an Extreme Programming Course

This paper presents an empirical study about identifying improvement actions for an eXtreme Programming course in the academic environment. This exploratory study is undertaken in two preliminary phases. These phases are part of a wider research project to develop a theory about how to continuously improve courses of similar structure and content. The first phase consists of diagnosing improvement actions from the 2010 edition of the course through a qualitative analysis of data obtained using various methods: (1) students’ responses to a questionnaire with open questions; and (2) students’ opinions expressed in a final agile retrospective with all members of the course. The second phase consists of an early application of the identified improvements in the 2011 edition of the course to gather lessons learned, and develop a definite case study design to be used continuously in the next courses offered. Amongst the results, we found that the use of initiatives to promote interactions between groups like Coding Dojo and Brainwritting helps students to effectively learn and share knowledge and experiences, a problem still unsolved when thinking of scaling agile methods. Also, this paper allows keeping track on what is occurring in the course.
Suppression of V1 Feedback Produces a Shift in the Topographic Representation of Receptive Fields of LGN Cells by Unmasking Latent Retinal Drives

In awake monkeys, we used repetitive transcranial magnetic stimulation (rTMS) to focally inactivate visual cortex while measuring the responsiveness of parvocellular lateral geniculate nucleus (LGN) neurons. Effects were noted in 64/75 neurons, and could be divided into 2 main groups: (1) for 39 neurons, visual responsiveness decreased and visual latency increased without apparent shift in receptive field (RF) position and (2) a second group (n = 25, 33% of the recorded cells) whose excitability was not compromised, but whose RF position shifted an average of 4.5°. This change is related to the retinotopic correspondence observed between the recorded thalamic area and the affected cortical zone. The effect of inactivation for this group of neurons was compatible with silencing the original retinal drive and unmasking a second latent retinal drive onto the studied neuron. These results indicate novel and remarkable dynamics in thalamocortical circuitry that force us to reassess constraints on retinogeniculate transmission.
Fruit Fiber Consumption Specifically Improves Liver Health Status in Obese Subjects under Energy Restriction

The prevalence of non-alcoholic-fatty-liver-disease (NAFLD) is associated with obesity, diabetes, and metabolic syndrome (MS). This study aimed to evaluate the influence of two energy-restricted diets on non-invasive markers and scores of liver damage in obese individuals with features of MS after six months of follow-up and to assess the role of fiber content in metabolic outcomes. Seventy obese individuals from the RESMENA (Reduction of Metabolic Syndrome in Navarra) study were evaluated at baseline and after six months of energy-restricted nutritional intervention (American Heart Association (AHA) and RESMENA dietary groups). Dietary records, anthropometrical data, body composition by dual energy X-ray absorptiometry (DXA), and routine laboratory measurements were analyzed by standardized methods. Regarding liver status, cytokeratin-18 fragments and several non-invasive scores of fatty liver were also assessed. The RESMENA strategy was a good and complementary alternative to AHA for the treatment of obesity-related comorbidities. Participants with higher insoluble fiber consumption (≥7.5 g/day) showed improvements in fatty liver index (FLI), hepatic steatosis index (HIS), and NAFLD liver fat score (NAFLD_LFS), while gamma-glutamyl transferase (GGT) and transaminases evidenced significant improvements as a result of fruit fiber consumption (≥8.8 g/day). Remarkably, a regression model evidenced a relationship between liver status and fiber from fruits. These results support the design of dietary patterns based on the consumption of insoluble fiber and fiber from fruits in the context of energy restriction for the management of obese patients suffering fatty liver disease.
WikiM: Metapaths Based Wikification of Scientific Abstracts

In order to disseminate the exponential extent of knowledge being produced in the form of scientific publications, it would be best to design mechanisms that connect it with already existing rich repository of concepts - the Wikipedia. Not only does it make scientific reading simple and easy (by connecting the involved concepts used in the scientific articles to their Wikipedia explanations) but also improves the overall quality of the article. In this paper, we present a novel metapath based method, WikiM, to efficiently wikify scientific abstracts - a topic that has been rarely investigated in the literature. One of the prime motivations for this work comes from the observation that, wikified abstracts of scientific documents help a reader to decide better, in comparison to the plain abstracts, whether (s)he would be interested to read the full article. We perform mention extraction mostly through traditional tf-idf measures coupled with a set of smart filters. The entity linking heavily leverages on the rich citation and author publication networks. Our observation is that various metapaths defined over these networks can significantly enhance the overall performance of the system. For mention extraction and entity linking, we outperform most of the competing state-of-the-art techniques by a large margin arriving at precision values of 72.42% and 73.8% respectively over a dataset from the ACL Anthology Network. In order to establish the robustness of our scheme, we wikify three other datasets and get precision values of 63.41%-94.03% and 67.67%-73.29% respectively for the mention extraction and the entity linking phase.
Coding for Improved Throughput Performance in Network Switches

Network switches and routers need to serve packet writes and reads at rates that challenge the most advanced memory technologies. As a result, scaling the switching rates is commonly done by parallelizing the packet I/Os using multiple memory units. For improved read rates, packets can be coded upon write, thus giving more flexibility at read time to achieve higher utilization of the memory units. This paper presents a detailed study of coded network switches, and in particular, how to design them to maximize the throughput advantages over standard uncoded switches. Toward that objective, the paper contributes a variety of algorithmic and analytical tools to improve and evaluate the throughput performance. The most interesting finding of this paper is that the placement of packets in the switch memory is the key to both high performance and algorithmic efficiency. One particular placement policy we call “design placement” is shown to enjoy the best combination of throughput performance and implementation feasibility.
Ciguatoxins and Maitotoxins in Extracts of Sixteen Gambierdiscus Isolates and One Fukuyoa Isolate from the South Pacific and Their Toxicity to Mice by Intraperitoneal and Oral Administration

Ciguatoxins (CTXs), and possibly maitotoxins (MTXs), are responsible for Ciguatera Fish Poisoning, an important health problem for consumers of reef fish (such as inhabitants of islands in the South Pacific Ocean). The habitational range of the Gambierdiscus species is expanding, and new species are being discovered. In order to provide information on the potential health risk of the Gambierdiscus species, and one Fukuyoa species (found in the Cook Islands, the Kermadec Islands, mainland New Zealand, and New South Wales, Australia), 17 microalgae isolates were collected from these areas. Unialgal cultures were grown and extracts of the culture isolates were analysed for CTXs and MTXs by liquid chromatography tandem mass spectrometry (LC-MS/MS), and their toxicity to mice was determined by intraperitoneal and oral administration. An isolate of G. carpenteri contained neither CTXs nor MTXs, while 15 other isolates (including G. australes, G. cheloniae, G. pacificus, G. honu, and F. paulensis) contained only MTX-1 and/or MTX-3. An isolate of G. polynesiensis contained both CTXs and MTX-3. All the extracts were toxic to mice by intraperitoneal injection, but those containing only MTX-1 and/or -3 were much less toxic by oral administration. The extract of G. polynesiensis was highly toxic by both routes of administration.