Miracle-dz/UniFAR-FTUs huggingface dataset:
Audio-visual speech recognition in the presence of non-stationary noise

This project has concerned the development of novel techniques for exploiting visual speech information (e.g. lip and face movements) in the design of automatic speech recognition systems. The approaches explored are motivated by the desire for reliable speech recognition in the presence of highly non-stationary noise sources, such as background speech. The basis of the project is a recent approach to robust automatic speech recognition that couples the problems of source separation and speech recognition by ‘piecing together’ spectro-temporal fragments of speech recovered from regions of a time-frequency representation in which the signal locally dominates the noise. The project has extended this approach into the audio-visual domain. The audio-visual system exploits the correlation that exists between audio and visual aspects of speech to resolve ambiguities in the acoustic fragment labelling that occur when attempting to recognise speech in the presence of noises with speech-like characteristics.
Incentive P2P networks: a protocol to encourage information sharing and contribution

The rapid growth of decentralized and unstructured peer-topeer (P2P) networks [3, 7] points to a new efficient paradigm for information exchange on the Internet. A P2P network may exhibit a power-law topology [5] such that it can propagate queries quickly and, if implemented efficiently [7], it can locate objects in time, where is the number of nodes in the network. However, there are remaining problems with the P2P paradigm which complicates its deployment. Freeriding and tragedy of the commons are two major problems. As shown in [1], nearly 70% of Gnutella users do not share any file with the P2P community and nearly 50% of all search responses come from the top 1% of content sharing nodes. Therefore, nodes that share resources are always congested and the tragedy of the commons [2] occurs. Another problem is that many users misreport their connection types so as to discourage others from going to their sites for file download. Worse yet, there is no service differentiation between users who do not share any information and users who contribute significantly to the P2P community. The objective of this paper is to design a mechanism that provides incentives for users to share information and offers preferential service to users who contribute to the P2P community. In particular, we address the following questions:
Mercury Reduction and Methyl Mercury Degradation by the Soil Bacterium Xanthobacter autotrophicus Py2

ABSTRACT Two previously uncharacterized potential broad-spectrum mercury (Hg) resistance operons (mer) are present on the chromosome of the soil Alphaproteobacteria Xanthobacter autotrophicus Py2. These operons, mer1 and mer2, contain two features which are commonly found in mer operons in the genomes of soil and marine Alphaproteobacteria, but are not present in previously characterized mer operons: a gene for the mercuric reductase (MerA) that encodes an alkylmercury lyase domain typical of those found on the MerB protein, and the presence of an additional gene, which we are calling merK, with homology to glutathione reductase. Here, we demonstrate that Py2 is resistant to 0.2 μM inorganic mercury [Hg(II)] and 0.05 μM methylmercury (MeHg). Py2 is capable of converting MeHg and Hg(II) to elemental mercury [Hg(0)], and reduction of Hg(II) is induced by incubation in sub toxic concentrations of Hg(II). Transcription of the merA genes increased with Hg(II) treatment, and in both operons merK resides on the same polycistronic mRNA as merA. We propose the use of Py2 as a model system for studying the contribution of mer to Hg mobility in soil and marine ecosystems.
A Novel Assay for Detection of Methicillin-Resistant Staphylococcus aureus Directly From Clinical Samples

The timely detection of Methicillin-resistant Staphylococcus aureus (MRSA) is crucial for antimicrobial therapy and a key factor to limit the hospital spread of MRSA. Currently available commercial MRSA detection assays target the 3′ end of the orfX gene and the right extremity of Staphylococcal Cassette Chromosome mec (SCCmec). These assays suffer from both false positive due to SCC-like elements that lack mecA and false negative results due to the inability to detect new or variant SCCmec cassettes with the existing primers. We developed a novel MRSA detection scheme, designed to circumvent issues present in the existing commercial assays. Our assay demonstrated specificity and accuracy, capable of detecting prototypic strains of SCCmec types I-XIII [C(t) values ranged 8.58–26.29]. Previous false positive isolates (N = 19) by Xpert MRSA nasal assay were accurately classified with our assay. Further validation with 218 randomly selected clinical isolates (73 MRSA, 75 MSSA, 43 MR-CoNS, and 27 MS-CoNS) confirmed its feasibility and practicality. Testing assay performance with 88 direct clinical swabs from 33 patients showed that the assay was 96.6% in agreement with clinical culture results. Our novel MRSA detection assay targets both the S. aureus specific sequence and the mecA/mecC genes simultaneously to overcome the false positive and false negative deficits of currently available commercial assays. The results validate our assay and confirmed its feasibility and practicality. The assay is not affected by SCCmec types and only needs modification if new mec homologs emerge and establishes a new platform for other emerging SCCmec types.
People with stroke living in the community: Attention deficits, balance, ADL ability and falls

Purpose : To describe levels of attention deficits among people with stroke living in the community and explore relationships between attention, balance, function and falls. Method : Forty-eight mobile community-dwelling people with stroke (30 men, 18 women, mean age 68.4 v - v 11.2) were recruited to this cross-sectional investigation through General Practitioners. Twenty-six participants had a right, 21 a left hemisphere infarction and one had a brain stem lesion; mean time since stroke was 46 months (range five to 204). Participants' were interviewed about fall-events; attention, balance and function were assessed using standardised tests. Results : Visual inattention was identified in five participants (10%), deficits of sustained attention in 15 (31%), auditory selective attention in nine (19%), visual selective attention in 17 (35%) and divided attention deficits in 21 participants (43%). Sustained and divided attention scores correlated with balance, ADL ability and fall-status ( p v < v 0.01). The balance and function of subjects with normal attention were better than those with abnormal scores ( p v < v 0.01). Analysis of variance revealed differences between repeat-fallers and non-fallers with no near-falls for divided attention, balance and ADL ability ( p v < v 0.01). Conclusions : Attention deficits were common among this sample; sustained and divided attention deficits correlated with functional impairments and falls, highlighting that attention deficits might contribute to accident prone behaviour and falling.
Ambiguity analysis of isolation - based multi-antenna structures on mobile terminal

This paper presents a comprehensive numerical study on the ambiguities for different isolation-based multi-antenna structures. The focus is on four-element planar inverted-F antennas (PIFA) array on a typical 100mm × 40mm mobile terminal chassis operating at 3500 MHz. The study is conducted by taking into account the effects of antenna isolation, mutual coupling between mobile terminal chassis and antenna element, and mutual coupling among antenna elements. The results show that the studied multi-antenna structures with low-isolation level, i.e. when there exist high mutual coupling among antenna elements, are less ambiguous. With such observations, a novel eight-element PIFA array has been designed for radio direction finding (RDF) applications on a mobile terminal.
Modeling and control of flexible structure systems with lumped masses

This article aims to seek approaches to modeling and controlling the motion of mass-flexible structure systems composed of two lumped masses connected by two flexible structures modeled as distributed masses. The system model is first developed, and the system transfer function is then determined. With the system model, there are two control schemes (feedback control and feedforward control) proposed and implemented to track a desired trajectory. The main contributions of this article are to develop the model of mass-flexible structure systems and to seek control methods to regulate the trajectory. The simulation results show that (i) the feedback method cannot track a fast trajectory properly, and (ii) the feedforward control can track a very fast trajectory with very small tracking errors.
Complex Gastrointestinal and Endocrine Sources of Inflammation in Schizophrenia

A low level, inflammatory phenotype is prevalent in individuals with schizophrenia, but the source of this inflammation is not known. Studies of the gut–brain axis indicate that this inflammation may be related to the translocation of intestinal microbes across a permeabilized gut–vasculature barrier. In addition, studies of the endocrine system support that this inflammation may derive from effects of stress hormones and metabolic imbalances. Gastrointestinal (GI) and endocrine conditions are not mutually exclusive, but rather may have additive effects to produce this inflammatory phenotype in schizophrenia. Here, we examined a series of plasma biomarkers used to measure general inflammation and presumably microbial, gut-derived inflammation in 409 individuals with schizophrenia: c-reactive protein (CRP), lipopolysaccharide-binding protein (LBP), soluble CD14 (sCD14), and IgG antibodies to S. cerevisiae, bovine milk casein, and wheat gluten. Individuals were stratified according to whether or not they had a comorbid GI or endocrine condition, both, or neither. In multivariate regression models, the presence of GI and endocrine conditions was additive for the GI-based marker, LBP, with significant associations only when both conditions were present compared to when both conditions were absent (OR = 2.32, 95th% CI 1.05–5.13, p < 0.03). In contrast, the marker of general inflammation, CRP, was strongly associated with primarily endocrine conditions (OR = 3.64, 95th% CI 1.35–9.84, p < 0.05). Overall associations were largely driven by the GI condition, gastroesophageal reflux disease (GERD), and by the endocrine condition, obesity. In univariate comparisons, S. cerevisiae IgG levels were significantly elevated only in persons with GI conditions (p < 0.02), whereas antibodies to the food antigens were elevated in the presence of either or both conditions (p < 0.005–0.04). More severe psychiatric symptoms were associated only with GI conditions (p < 0.01–0.04). In conclusion, both GI and endocrine abnormalities may contribute to inflammation in schizophrenia, sometimes independently and sometimes as part of interactions which may represent complex integrated pathways. The accumulating evidence for multisystem inflammation in schizophrenia may lead to the development of new strategies to prevent and treat this devastating disorder.
Generation and characterization of Japanese encephalitis virus specific monoclonal antibodies.

Monoclonal antibodies (MoAbs) specifically against Japanese encephalitis virus (JEV) were generated by fusion of immunized mouse spleen cells with NS-1 myeloma cells. Nakayama-NIH (Na) and three Taiwan local strains of JEV, i.e., TL isolated from a patient's brain in 1965, NT109 (JE7) isolated from Cx. tritaeniorhynchus in 1985, and RP9, a plaque purified clone of NT109, were used in the immunization. The specificities of moAbs were determined by immunoprecipitation and western blotting, using JEV-infected cell lysates. They were confirmed by the same methods using recombinant JEV proteins as antigens. From Na immunization, 4 anti-E, 3 anti-NS1 and 3 anti-NS3 moAbs were generated. Seventeen anti-E, three anti-NS1 and three anti-NS3 specific moAbs were generated from mice immunized with Taiwan local JEV strains. Overall 21 anti-E, 6 anti-NS1, and 6 anti-NS3 moAbs were produced and characterized. The isotypes of these moAbs were also determined and described. Interestingly, a majority of the moAbs generated for RP9 were IgG1 isotype. In conclusion, 33 moAbs specific to JEV were generated and characterized, and some of these anti-JEV moAbs were made against Taiwan local isolates. These moAbs provide a powerful tool to study JEV, especially the antigenic properties of Taiwan's local strains.
Interleukin-6 Alters the Cellular Responsiveness to Clopidogrel, Irinotecan, and Oseltamivir by Suppressing the Expression of Carboxylesterases HCE1 and HCE2

Carboxylesterases constitute a class of enzymes that play important roles in the hydrolytic metabolism of drugs and other xenobiotics. Patients with liver conditions such as cirrhosis show increased secretion of proinflammatory cytokines [e.g., interleukin-6 (IL-6)] and decreased capacity of hydrolysis. In this study, we provide a molecular explanation linking cytokine secretion directly to the decreased capacity of hydrolytic biotransformation. In both primary hepatocytes and HepG2 cells, treatment with IL-6 decreased the expression of human carboxyl-esterases HCE1 and HCE2 by as much as 60%. The decreased expression occurred at both mRNA and protein levels, and it was confirmed by enzymatic assay. In cotransfection experiments, both HCE1 and HCE2 promoters were significantly repressed, and the repression was comparable with the decrease in HCE1 and HCE2 mRNA, suggesting that transrepression is responsible for the suppressed expression. In addition, pretreatment with IL-6 altered the cellular responsiveness in an opposite manner of overexpression of HCE1 and HCE2 toward various ester therapeutic agents (e.g., clopidogrel). Transfection of HCE1, for example, decreased the cytotoxicity induced by antithrombogenic agent clopidogrel, whereas pretreatment with IL-6 increased the cytotoxicity. Such a reversal was observed with other ester drugs, including anticancer agent irinotecan and anti-influenza agent oseltamivir. The altered cellular responsiveness was observed when drugs were assayed at sub- and low-micromolar concentrations, suggesting that suppressed expression of carboxylesterases by IL-6 has profound pharmacological consequences, particularly with those that are hydrolyzed in an isoform-specific manner.
Travelling Expenses: The Energy Cost of Diel Vertical Migrations of Epipelic Microphytobenthos

The physiology of the diel movements of epipelic microphytobenthic diatoms is not fully understood. As well, the evolutionary pressures that led to migratory behavior and the ecological role of vertical migrations remain unknown. The behavioral photoprotection hypothesis, according to which the diatoms move along the vertical light gradient to find their optimal light environment, is the most generally accepted. However, the motion is associated with an energy cost that has not been fully acknowledged before. To throw light on this issue, we looked at the mechanisms of diatom locomotion and reviewed their patterns of movement. Making use of published data, we estimated an energy cost of 0.12 pJ for a typical diatom cell to move upward (or downward) in a 400 μm photic zone. This amounts to 3.93 ×10−18 mol of ATP, which are released by the oxidation of 1.31 ×10−19 mol of glucose. This represents only 0.0001% of the daily net photosynthetic production of a typical microphytobenthic diatom cell, showing that diel vertical migrations have a negligible impact on cell and ecosystem energy budget. Even though the migration energy cost of individual cells may depart almost two orders of magnitude from the central value presented for a typical diatom (depending on cell size, velocity of displacement, and viscosity of the medium), the maximum value calculated is still negligible from the metabolic and ecologic point of view. Results show that behavioral photoprotection might be an energetically cheap mechanism, offering competitive advantages when compared with structural/physiological photoprotection.
Heme-Dependent ER Stress Apoptosis: A Mechanism for the Selective Toxicity of the Dihydroartemisinin, NSC735847, in Colorectal Cancer Cells

Colorectal cancer (CRC) is a leading cause of cancer death in the United States. Artemisinin derivatives, including the dihydroartemisinin (DHA) monomers, are widely used as clinical agents for the treatment of malaria. Numerous studies demonstrate that these molecules also display antineoplastic activity with minimal toxicity. Of interest, dimeric DHA molecules are more active than their monomeric counterparts. Our previous data showed that the DHA dimer, NSC735847, was a potent inducer of death in different cancer cell types. However, the mechanism of action and activity of NSC735847 in colon cancer cells was not explored. The present study investigated the anticancer activity of NSC735847 and four structurally similar analog in human tumorigenic (HT-29 and HCT-116) and non-tumorigenic (FHC) colon cell lines. NSC735847 was more cytotoxic toward tumorigenic than non-tumorigenic colonocytes. In addition, NSC735847 exhibited greater cytotoxicity and tumor selectivity than the NSC735847 derivatives. To gain insight into mechanisms of NSC735847 activity, the requirement for endoplasmic reticulum (ER) stress and oxidative stress was tested. The data show that ER stress played a key role in the cytotoxicity of NSC735847 while oxidative stress had little impact on cell fate. In addition, it was observed that the cytotoxic activity of NSC735847 required the presence of heme, but not iron. The activity of NSC735847 was then compared to clinically utilized CRC therapeutics. NSC735847 was cytotoxic toward colon tumor cells at lower concentrations than oxaliplatin (OX). In addition, cell death was achieved at lower concentrations in colon cancer cells that were co-treated with folinic acid (Fol), 5-FU (F), and NSC735847 (FolFNSC), than Fol, F, and OX (FolFOX). The selective activity of NSC735847 and its ability to induce cytotoxicity at low concentrations suggest that NSC735847 may be an alternative for oxaliplatin in the FolFOX regimen for patients who are unable to tolerate its adverse effects.
Psychological Symptoms During the Two Stages of Lockdown in Response to the COVID-19 Outbreak: An Investigation in a Sample of Citizens in Northern Spain

Spain has been in a state of emergency since 14th March due to the COVID-19 crisis. This state of emergency means that the population must comply with strict rules such as lockdown (confinement to their homes except for essential trips) and social distancing. The aim of this study was to examine the psychological state of the general population in a sample recruited in Northern Spain. Sociodemographic and psychological data were gathered, assessing variables such as stress, anxiety, and depression. A questionnaire was administered at the beginning of the lockdown and three weeks later. The sample was recruited using an online questionnaire by means of a non-probabilistic snowball sampling methodology. A total of 1,933 people participated in this study. The results reveal that more than a quarter of the participants have reported symptoms of depression (27.5%), anxiety (26.9%) and stress (26.5%) and as the time spent in lockdown has progressed, psychological symptoms have risen. In relation to gender, data indicate that men have higher levels of depression than women, and similar levels of anxiety and stress. Greater symptomatology has also been found among the younger population and in people with chronic diseases. We discuss the need to continue carrying out these types of studies to prevent and treat psychological problems that could emerge amidst this pandemic.
Overexpressed poly(ADP‐ribose) polymerase delays the release of rat cells from p53‐mediated G1 checkpoint

We have previously reported that in cells ectopically expressing temperature‐sensitive p53135val mutant, p53 formed tight complexes with poly(ADP‐ribose) polymerase (PARP). At elevated temperatures, p53135val protein, adopting the mutant phenotype, was localized in the cytoplasm and sequestered the endogenous PARP. To prove whether an excess of p53135val protein led to this unusual intracellular distribution of PARP, we have established cell lines overexpressing p53135val + c‐Ha‐ras alone or in combination with PARP. Interestingly, immunostaining revealed that PARP is sequestered in the cytoplasm by mutant p53 in cells overexpressing both proteins. Simultaneous overexpression of PARP had no effect on temperature‐dependent cell proliferation and only negligibly affected the kinetics of p53‐mediated G1 arrest. However, if the cells were completely growth arrested at 32°C and then shifted up to 37°C, coexpressed PARP dramatically delayed the reentry of transformed cells into the cell cycle. Even after 72 h at 37°C the proportion of S‐phase cells was reduced to 20% compared to those expressing only p53135val + c‐Ha‐ras. The coexpressed PARP stabilized wt p53 protein and its enzymatic activity was necessary for stabilization. J. Cell. Biochem. 80:85–103, 2000. © 2000 Wiley‐Liss, Inc.
A Clathrin-Related Protein, SCD2/RRP1, Participates in Abscisic Acid Signaling in Arabidopsis

Abscisic acid (ABA) plays important roles in many aspects of plant growth and development, and responses to diverse stresses. Although much progress has been made in understanding the molecular mechanisms of ABA homoeostasis and signaling, the mechanism by which plant cells integrate ABA trafficking and signaling to regulate plant developmental processes is poorly understood. In this study, we used Arabidopsis STOMATAL CYTOKINESIS DEFECTIVE 2/RIPENING-REGULATED PROTEIN 1 (SCD2/RRP1) mutants and overexpression plants, in combination with transcriptome and protein-interaction assays, to investigate SCD2/RRP1 involvement in the integration of ABA trafficking and signaling in seed germination and seedling growth. Manipulation of SCD2/RRP1 expression affected ABA sensitivity in seed germination and seedling growth, as well as transcription of several ABA transporter genes and ABA content. RNA-sequencing analysis of Arabidopsis transgenic mutants suggested that SCD2/RRP1 was associated with ABA signaling via a type 2C protein phosphatase (PP2C) protein. The N- and C-terminal regions of SCD2/RRP1 separately interacted with both PYRABACTIN RESISTANCE 1 (PYR1) and ABA INSENSITIVE 1 (ABI1) on the plasma membrane, and SCD2/RRP1 acted genetically upstream of ABI1. Interestingly, ABA inhibited the interaction of SCD2/RRP1 with ABI1, but did not affect the interaction of SCD2/RRP1 with PYR1. These results suggested that in Arabidopsis SCD2/RRP1participates in early seed development and growth potentially through clathrin-mediated endocytosis- and clathrin-coated vesicle-mediated ABA trafficking and signaling. These findings provide insight into the mechanism by which cells regulate plant developmental processes through ABA.