Miracle-dz/UniFAR-FTUs huggingface dataset:
Inflammation‐Induced Intussusceptive Angiogenesis in Murine Colitis

Intussusceptive angiogenesis is a morphogenetic process that forms new blood vessels by the division of a single blood vessel into two lumens. Here, we show that this process of intraluminal division participates in the inflammation‐induced neovascularization associated with chemically induced murine colitis. In studies of both acute (4–7 days) and chronic (28–31 days) colitis, intravital microscopy of intravascular tracers demonstrated a twofold reduction in blood flow velocity. In the acute colitis model, the decreased velocity was associated with marked dilatation of the mucosal plexus. In contrast, chronic inflammation was associated with normal caliber vessels and duplication (and triplication) of the quasi‐polygonal mucosal plexus. Scanning electron microscopy (SEM) of intravascular corrosion casts suggested that pillar formation and septation, previously linked to the morphogenetic process of intussusceptive angiogenesis, were present within days of the onset of inflammation. Four weeks after the onset of inflammation, SEM of vascular corrosion casts demonstrated replication of the mucosal plexus without significant evidence of sprouting angiogenesis. These data suggest that mucosal capillaries have comparable aggregate cross‐sectional area in acute and chronic colitis; however, there is a significant increase in functional capillary density in chronic colitis. We conclude that intussusceptive angiogenesis is a fundamental mechanism of microvascular adaptation to prolonged inflammation. Anat Rec, 2010. © 2010 Wiley‐Liss, Inc.
Parameter Study for Child Injury Mitigation in Near-Side Impacts Through FE Simulations

Objective: The objective of this study is to investigate the effects of crash-related car parameters on head and chest injury measures for 3- and 12-year-old children in near-side impacts. Methods: The evaluation was made using a model of a complete passenger car that was impacted laterally by a barrier. The car model was validated in 2 crash conditions: the Insurance Institute for Highway Safety (IIHS) and the US New Car Assessment Program (NCAP) side impact tests. The Small Side Impact Dummy (SID-IIs) and the human body model 3 (HBM3) (Total HUman Model for Safety [THUMS] 3-year-old) finite element models were used for the parametric investigation (HBM3 on a booster). The car parameters were as follows: vehicle mass, side impact structure stiffness, a head air bag, a thorax–pelvis air bag, and a seat belt with pretensioner. The studied dependent variables were as follows: resultant head linear acceleration, resultant head rotational acceleration, chest viscous criterion, rib deflection, and relative velocity at head impact. The chest measurements were only considered for the SID-IIs. Results: The head air bag had the greatest effect on the head measurements for both of the occupant models. On average, it reduced the peak head linear acceleration by 54 g for the HBM3 and 78 g for the SID-IIs. The seat belt had the second greatest effect on the head measurements; the peak head linear accelerations were reduced on average by 39 g (HBM3) and 44 g (SID-IIs). The high stiffness side structure increased the SID-IIs’ head acceleration, whereas it had marginal effect on the HBM3. The vehicle mass had a marginal effect on SID-IIs’ head accelerations, whereas the lower vehicle mass caused 18 g higher head acceleration for HBM3 and the greatest rotational acceleration. The thorax–pelvis air bag, vehicle mass, and seat belt pretensioner affected the chest measurements the most. The presence of a thorax–pelvis air bag, high vehicle mass, and a seat belt pretensioner all reduced the chest viscous criterion (VC) and peak rib deflection in the SID-IIs. Conclusions: The head and thorax–pelvis air bags have the potential to reduce injury measurements for both the SID-IIs and the HBM3, provided that the air bag properties are designed to consider these occupant sizes also. The seat belt pretensioner is also effective, provided that the lateral translation of the torso is managed by other features. The importance of lateral movement management is greater the smaller the occupant is. Light vehicles require interior restraint systems of higher performance than heavy vehicles do to achieve the same level of injury measures for a given side structure.
A primal-dual algorithm with optimal stepsizes and its application in decentralized consensus optimization

We consider a primal-dual algorithm for minimizing $f(x)+h(Ax)$ with differentiable $f$. The primal-dual algorithm has two names in literature: Primal-Dual Fixed-Point algorithm based on the Proximity Operator (PDFP$^2$O) and Proximal Alternating Predictor-Corrector (PAPC). In this paper, we extend it to solve $f(x)+h\square l(Ax)$ with differentiable $l^*$ and prove its convergence under a weak condition (i.e., under a large dual stepsize). With additional assumptions, we show its linear convergence. In addition, we show that this condition is optimal and can not be weaken. This result recovers the recent proposed positive-indefinite linearized augmented Lagrangian method. Then we consider the application of this primal-dual algorithm in decentralized consensus optimization. We show that EXact firsT-ordeR Algorithm (EXTRA) and Proximal Gradient-EXTRA (PG-EXTRA) can be consider as the primal-dual algorithm applied on a problem in the form of $h\square l(Ax)$. Then, the optimal upper bound of the stepsize for EXTRA/PG-EXTRA is derived. It is larger than the existing work on EXTRA/PG-EXTRA. Furthermore, for the case with strongly convex functions, we proved linear convergence under the same condition for the stepsize.
Gene Disruption Studies of Penicillin-Binding Proteins 1a, 1b, and 2a in Streptococcus pneumoniae

ABSTRACT The effects of inactivation of the genes encoding penicillin-binding protein 1a (PBP1a), PBP1b, and PBP2a inStreptococcus pneumoniae were examined. Insertional mutants did not exhibit detectable changes in growth rate or morphology, although a pbp1a pbp1b double-disruption mutant grew more slowly than its parent did. Attempts to generate a pbp1a pbp2a double-disruption mutant failed. The pbp2amutants, but not the other mutants, were more sensitive to moenomycin, a transglycosylase inhibitor. These observations suggest that individually the pbp1a, pbp1b, andpbp2a genes are dispensable but that eitherpbp1a or pbp2a is required for growth in vitro. These results also suggest that PBP2a is a functional transglycosylase in S. pneumoniae.
E2A deficiency leads to abnormalities in alphabeta T-cell development and to rapid development of T-cell lymphomas

The E2A gene products, E12 and E47, are critical for proper early B-cell development and commitment to the B-cell lineage. Here we reveal a new role for E2A in T-lymphocyte development. Loss of E2A activity results in a partial block at the earliest stage of T-lineage development. This early T-cell phenotype precedes the development of a T-cell lymphoma which occurs between 3 and 9 months of age. The thymomas are monoclonal and highly malignant and display a cell surface phenotype similar to that of immature thymocytes. In addition, the thymomas generally express high levels of c-myc. As assayed by comparative genomic hybridization, each of the tumor populations analyzed showed a nonrandom gain of chromosome 15, which contains the c-myc gene. Taken together, the data suggest that the E2A gene products play a role early in thymocyte development that is similar to their function in B-lineage determination. Furthermore, the lack of E2A results in development of T-cell malignancies, and we propose that E2A inactivation is a common feature of a wide variety of human T-cell proliferative disorders, including those involving the E2A heterodimeric partners tal-1 and lyl-1.
Tolerability of ambulatory blood pressure monitoring (ABPM) in cognitively impaired elderly

Abstract Objective: Recent guidelines have widened clinical indications for out-of-office blood pressure measurement, including home blood pressure monitoring and ambulatory blood pressure monitoring (ABPM), suggesting the latter as recommended method in cognitively impaired patients. There is, however, a widespread belief that ABPM could be poorly tolerated in dementia, often leading to withdraw from its use in these patients. Aim: To assess the actual tolerability of ABPM in a group of cognitively impaired elderly, affected by dementia or mild cognitive impairment (MCI). Methods: We evaluated 176 patients aged 65 + years, recruited in two different memory clinics, with a Mini Mental State Examination (MMSE) between 10 and 27. Behavioral and psychological symptoms were assessed with Neuropsychiatric Inventory (NPI). A patient was considered tolerant if able to keep the device on continuously for 24 h. The minimum number of correct measurements required was 70% of the predicted total number. Results: 16% of patients wore the device for less than 24 h. Dividing the study population in tertiles of MMSE performance, 29% failed to tolerate the device in the lowest, 12% in the middle and 7% in the highest tertile (p < 0.01). Dividing the study population in tertiles of NPI performance, 30% of patients failed in the highest, 19% in the middle and 8% in the lowest tertile (p = 0.02); 31% of patients who tolerated the device did not achieve the minimum number of measurements required, with a mean number of 63% of predicted measurements. Conclusion: The ABPM proved a generally well-tolerated technique even in cognitively impaired elderly. Only a minority of subjects with poorer cognitive performances and greater behavioral symptoms did not tolerate the monitoring. Among most patients who failed to achieve the minimum number of measurements needed, the number of valid measurements was very close to the minimum required.
Reel Ekonomiye Katkıları Bakımından Katılım Bankalarının Kullandırdığı Fonların Analizi (Analysis of Allocated Funds of Participation Banks in Terms of Contribution to Real Economy)

Participation banks have been operating as a third kind of banks as well as deposit banks and development/investment banks in Turkish Banking System since 1985. Participation banks are operating according to Islamic principles. Therefore, they do not use interest in collecting and utilizing funds processes instead use profit/loss sharing model in these processes. The amount of allocated funds by participation banks and the share of participation banks in allocated funds have increased in the banking sector especially since 2002. The profit/loss method that is one of the methods on allocated funds by participation banks in the banking sector is the most important method contribution to the real economy. Nevertheless, the share of allocated funds on the basis of the profit/loss method is very low in the total allocated funds. In this case shows that participation banks despite of passing 30 years after its founding could not provide yet the expected contribution to the real sector of Turkish economy.
Compressive Sensing of Electrocardiogram Signals by Promoting Sparsity on the Second-Order Difference and by Using Dictionary Learning

A new algorithm for the reconstruction of electrocardiogram (ECG) signals and a dictionary learning algorithm for the enhancement of its reconstruction performance for a class of signals are proposed. The signal reconstruction algorithm is based on minimizing the lp pseudo-norm of the second-order difference, called as the lp2d pseudo-norm, of the signal. The optimization involved is carried out using a sequential conjugate-gradient algorithm. The dictionary learning algorithm uses an iterative procedure wherein a signal reconstruction and a dictionary update steps are repeated until a convergence criterion is satisfied. The signal reconstruction step is implemented by using the proposed signal reconstruction algorithm and the dictionary update step is implemented by using the linear least-squares method. Extensive simulation results demonstrate that the proposed algorithm yields improved reconstruction performance for temporally correlated ECG signals relative to the state-of-the-art lp1d-regularized least-squares and Bayesian learning based algorithms. Also for a known class of signals, the reconstruction performance of the proposed algorithm can be improved by applying it in conjunction with a dictionary obtained using the proposed dictionary learning algorithm.
From Lightning Rod to Community Asset? The Creation of a Protected Area in Northern California and its Evolving Relationship to a Nearby Community

Abstract Researchers have described shifting relationships between communities and Protected Areas (PAs), from excluding communities to consultative relationships to participatory models. This research focuses on a PA created on formerly industrial timberland that was the focus of conflict between environmental activists and the timber industry. In a nearby formerly timber-dependent community, we assessed community use and support of the PA, and its perceived purposes and benefits, through a survey of residents and interviews with key stakeholders. Despite intense conflict surrounding its creation, we found support for the PA, and our case suggests a new possible relationship between PAs and communities, which is mitigating and helping to resolve natural resource conflict. We also found that community well-being benefits of the PA were unclear; we suggest that PA management should include cultural, economic, and historical context in objectives and interpretive materials; and should work to create economic opportunities connected to the PA.
Large-Scale Brain Network Coupling Predicts Total Sleep Deprivation Effects on Cognitive Capacity

Interactions between large-scale brain networks have received most attention in the study of cognitive dysfunction of human brain. In this paper, we aimed to test the hypothesis that the coupling strength of large-scale brain networks will reflect the pressure for sleep and will predict cognitive performance, referred to as sleep pressure index (SPI). Fourteen healthy subjects underwent this within-subject functional magnetic resonance imaging (fMRI) study during rested wakefulness (RW) and after 36 h of total sleep deprivation (TSD). Self-reported scores of sleepiness were higher for TSD than for RW. A subsequent working memory (WM) task showed that WM performance was lower after 36 h of TSD. Moreover, SPI was developed based on the coupling strength of salience network (SN) and default mode network (DMN). Significant increase of SPI was observed after 36 h of TSD, suggesting stronger pressure for sleep. In addition, SPI was significantly correlated with both the visual analogue scale score of sleepiness and the WM performance. These results showed that alterations in SN-DMN coupling might be critical in cognitive alterations that underlie the lapse after TSD. Further studies may validate the SPI as a potential clinical biomarker to assess the impact of sleep deprivation.
Deletion of internal sequences results in tobacco mosaic virus defective RNAs that accumulate to high levels without interfering with replication of the helper virus.

Deletion of certain internal sequences of the tobacco mosaic tobamovirus (TMV) genome was required to create replication-defective RNAs (dRNA) that were replicated in trans by TMV. All dRNAs that accumulated to detectable levels were missing nucleotides 3420-4902, which appeared to constitute a core region that inhibited replication in trans. Deletion of additional sequences resulted in dRNAs that varied tremendously in ability to be replicated from none to levels exceeding that of the helper viral RNA. Accumulation of dRNA negative- and positive-stranded RNAs of each dRNA paralleled those of the helper virus. Negative-stranded RNA accumulation of both helper and dRNA ceased at the same early time in the infection while synthesis of both positive-stranded RNAs continued, suggesting that both dRNAs and helper virus RNAs were synthesized from the same pool of replicase complexes. Positive- to negative-stranded RNA ratios for the dRNAs were similar to, or slightly greater than the wild-type helper virus. Full-length dRNAs were not supported in trans by a replication-competent helper virus. Even though some of the artificially constructed dRNAs accumulated to levels exceeding the level of the helper virus, none appreciably affected the replication of the helper virus, suggesting that the dRNAs are produced from "excess" replicase capacity.
Possible clinical effects of molecular hydrogen (H2) delivery during hemodialysis in chronic dialysis patients: Interim analysis in a 12 month observation

Background and aim It is supposed that enhanced oxidative stress and inflammation are involved with the poor clinical outcomes in patients on chronic dialysis treatment. Recent studies have shown that molecular hydrogen (H2) is biologically active as an anti-inflammatory agent. Thus, we developed a novel hemodialysis (E-HD) system which delivers H2 (30 to 80 ppb)-enriched dialysis solution, to conduct a prospective observational study (UMIN000004857) in order to compare the long-term outcomes between E-HD and conventional-HD (C-HD) in Japan. The present interim analysis aimed to look at potential clinical effects of E-HD during the first 12 months observation. Subjects and method 262 patients (140, E-HD; 122, C-HD) were subjected for analysis for comprehensive clinical profiles. They were all participating in the above mentioned study, and they had been under the respective HD treatment for 12 consecutive months without hospitalization. Collected data, such as, physical and laboratory examinations, medications, and self-assessment questionnaires on subjective symptoms (i.e., fatigue and pruritus) were compared between the two groups. Results In a 12-month period, no clinical relevant differences were found in dialysis-related parameters between the two groups. However, there were differences in the defined daily dose of anti-hypertensive agents, and subjective symptoms, such as severe fatigue, and pruritus, which were all less in the E-HD group. Multivariate analysis revealed E-HD was an independent significant factor for the reduced use of anti-hypertensive agents as well as the absence of severe fatigue and pruritus at 12 months after adjusting for confounding factors. Conclusion The data indicates E-HD could have substantial clinical benefits beyond conventional HD therapy, and support the rationale to conduct clinical trials of H2 application to HD treatment.
Lipid-Lowering Drug Use and Cardiovascular Events after Myocardial Infarction

BACKGROUND: The benefits of lipid-lowering drug treatment for the secondary prevention of coronary heart disease have been well established by randomized, controlled trials. Nonetheless, the risk of events has not been compared directly for inhibitors of hydroxymethylglutaryl coenzyme A reductase (statins) and non-statin lipid-lowering drugs. Further, it remains uncertain whether patients in usual practice who are treated with lipid-lowering drugs after myocardial infarction (MI) gain a similar benefit with regard to the risk of cardiovascular events compared with patients in randomized, controlled trials. OBJECTIVE: To assess the association between lipid-lowering drug therapies in usual clinical practice and the risk of cardiovascular events in patients with a first MI who were discharged alive from the hospital. METHODS: An inception-cohort study was performed among 1956 enrollees of Group Health Cooperative who sustained an incident MI between July 1986 and December 1996 and survived for at least 6 months after hospitalization. Subjects with untreated low-density-lipoprotein cholesterol concentrations >130 mg/dL or untreated total cholesterol concentrations >200 mg/dL were included. The median duration of follow-up after the first MI was 3.3 years. Medical record review was used to collect information on cardiovascular risk factors. Computerized pharmacy records were used to assess antihyperlipidemic drug use during the first 6 months after hospitalization. RESULTS: Compared with 1263 subjects who did not receive lipid-lowering drug treatment, 373 subjects who received statins had a lower risk of recurrent coronary events (relative risk [RR] 0.59; 95% CI 0.39 to 0.89), stroke (RR 0.82; 95% CI 0.35 to 1.95), atherosclerotic cardiovascular mortality (RR 0.49; 95% CI 0.21 to 1.13), and any atherosclerotic cardiovascular event (RR 0.63; 95% CI 0.40 to 0.98). Among 320 subjects who used non-statin drug therapies, the RRs were 0.66 (95% CI 0.45 to 0.97) for recurrent coronary events, 0.95 (95% CI 0.46 to 1.95) for stroke, 0.68 (95% CI 0.35 to 1.32) for cardiovascular mortality, and 0.77 (95% CI 0.53 to 1.11) for any atherosclerotic cardiovascular event, compared with untreated hyperlipidemic patients. CONCLUSIONS: In this study of MI survivors, the use of lipid-lowering drug therapies after hospitalization was associated with a reduced risk of cardiovascular events. These results emphasize the importance of lipid-lowering drug treatment in patients with hyperlipidemia who survive a first MI.
Gaze estimation driven solution for interacting children with ASD

This paper investigates gaze estimation solutions for interacting children with Autism Spectrum Disorders (ASD). Previous research shows that satisfactory accuracy of gaze estimation can be achieved in constrained settings. However, most of the existing methods can not deal with large head movement (LHM) that frequently happens when interacting with children with ASD scenarios. We propose a gaze estimation method aiming at dealing with large head movement and achieving real time performance. An intervention table equipped with multiple sensors is designed to capture images with LHM. Firstly, reliable facial features and head poses are tracked using supervised decent method. Secondly, a convolution based integer-differential eye localization approach is used to locate the eye center efficiently and accurately. Thirdly, a rotation invariant gaze estimation model is built based on the located facial features, eye center, head pose and the depth data captured from Kinect. Finally, a multi-sensor fusion strategy is proposed to adaptively select the optimal camera to estimate the gaze as well as to fuse the depth information of the Kinect with the web camera. Experimental results showed that the gaze estimation method can achieve acceptable accuracy even in LHM situation and could potentially be applied in therapy for children with ASD.