Miracle-dz/UniFAR-FTUs huggingface dataset:
Detection of mycobacterial DNA in pleural fluid from patients with tuberculous pleurisy by means of the polymerase chain reaction: comparison of two protocols.

BACKGROUND: The detection of mycobacterial DNA in clinical samples on the basis of the polymerase chain reaction is a promising approach for the rapid diagnosis of tuberculous infections. No consensus exists, however, about which protocols are most sensitive, and the usefulness of this approach in the diagnosis of tuberculous effusions has been assessed in few patients. METHODS: The sensitivity of two protocols was compared for the detection of DNA from Mycobacterium tuberculosis in samples containing known amounts of mycobacterial DNA and in DNA extracted from 15 tuberculous pleural effusions. The results obtained for pleural fluid have been compared with cytological findings and with results obtained by standard microbiological techniques. RESULTS: Mycobacteria could be detected by acid fast staining in none and by culture in three of the 15 pleural fluid samples. A protocol based on the detection of the IS6110 insertion element (which could detect one mycobacterial genome/sample reproducibly) gave a positive result in nine of the 15 tuberculous effusions, though some samples were only intermittently positive (p less than 0.05 compared with culture). In contrast, a protocol based on the detection of the gene coding for the 65 kD mycobacterial antigen (which could detect mycobacterial genomes only if there were at least 10/sample) gave a positive result in three of the 15 tuberculous effusions. Pleural fluid that was always positive with the amplification procedure detecting the IS6110 sequence contained more neutrophils (30% (SD 27%)) than samples that were intermittently positive or always negative (3% (3%)); mycobacterial DNA was never detected in the four samples containing less than 1% neutrophils. CONCLUSIONS: The amplification of the IS6110 insertion element represents a rapid and sensitive means of detecting M tuberculosis in tuberculous effusions. The enrichment of cells containing mycobacteria (possibly neutrophils) before DNA extraction may be required to improve the sensitivity of this approach.
Synchrotron Reveals Early Triassic Odd Couple: Injured Amphibian and Aestivating Therapsid Share Burrow

Fossorialism is a beneficial adaptation for brooding, predator avoidance and protection from extreme climate. The abundance of fossilised burrow casts from the Early Triassic of southern Africa is viewed as a behavioural response by many tetrapods to the harsh conditions following the Permo-Triassic mass-extinction event. However, scarcity of vertebrate remains associated with these burrows leaves many ecological questions unanswered. Synchrotron scanning of a lithified burrow cast from the Early Triassic of the Karoo unveiled a unique mixed-species association: an injured temnospondyl amphibian (Broomistega) that sheltered in a burrow occupied by an aestivating therapsid (Thrinaxodon). The discovery of this rare rhinesuchid represents the first occurrence in the fossil record of a temnospondyl in a burrow. The amphibian skeleton shows signs of a crushing trauma with partially healed fractures on several consecutive ribs. The presence of a relatively large intruder in what is interpreted to be a Thrinaxodon burrow implies that the therapsid tolerated the amphibian’s presence. Among possible explanations for such unlikely cohabitation, Thrinaxodon aestivation is most plausible, an interpretation supported by the numerous Thrinaxodon specimens fossilised in curled-up postures. Recent advances in synchrotron imaging have enabled visualization of the contents of burrow casts, thus providing a novel tool to elucidate not only anatomy but also ecology and biology of ancient tetrapods.
Connecting wikis and natural language processing systems

We investigate the integration of Wiki systems with automated natural language processing (NLP) techniques. The vision is that of a "self-aware" Wiki system reading, understanding, transforming, and writing its own content, as well as supporting its users in information analysis and content development. We provide a number of practical application examples, including index generation, question answering, and automatic summarization, which demonstrate the practicability and usefulness of this idea. A system architecture providing the integration is presented, as well as first results from an initial implementation based on the GATE framework for NLP and the MediaWiki system.
MOVPE Self-Assembly and Physical Properties of Free-Standing III-V Nanowires

Quasi 1-dimensional (quasi-1D) semiconductor nano-crystals (so-called nanowires) represent the forefront of today’s solid state physics and technology. These systems, having two of their dimensions comparable to the wavelengths of the electronic or phononic wavefunctions, are expected to show a variety of quantum confinement effects, such as density of state singularities, molecular-like states extending over large distances, high luminescence efficiencies and low lasing threshold: these properties have led to consider quasi-1D nanostructures as the fundamental building blocks for the realization of novel types of photonic and electronic nano-devices. The high surface-to-volume ratio of these nanostructures allows also to exploit the role of surface states (and their ambient-driven changes) in determining the nanostructure carrier transport and optical excitation/recombination properties. Despite the abovementioned attractive physical and technological assets, until very recently, not too many studies were performed on quasi-1D semiconductor systems, whilst twodimensional (2D) structures − quantum wells − have been under study already for more than three decades and quasi zero-dimensional (0D) objects − quantum dots, QDs − have been in the focus of researchers for nearly two decades. The main reason for such discrepancy resides in the difficulty of fabricating these nanostructures. In the recent past, quasi-1D nanostructures of III-V compound semiconductors have been generally grown on three-dimensional patterned (V-grooved) substrates (Kapon, 1994), or on high-index (such as {n11}-oriented) substrate planes (Notzel & Ploog, 2000). In such cases the major nanowire dimension was running in the substrate plane, with the consequence, however, that interactions with the substrate may dominate over 1D effects. These difficulties have lead to consider free-standing quasi-1D nano-crystals having negligible interaction with the substrate. Free-standing nanowires based on III-V compound semiconductors are nowadays in the focus of intense research activities throughout the world; this in reason of the prominent role of these compounds in the optoelectronic arena. Demonstration of resonant tunnelling diodes (Bjork et al. 2002; Wensorra et al., 2005), single electron transistors (Thelander et al., 2003; Thelander et al., 2005), and photodetectors (Pettersson et al., 2006) based on quasi-1D nanostructures of III-V compounds have been reported. Also intense single photon sources have been fabricated by embedding InGaP quantum dots in free-standing GaP nanowires Source: Nanowires, Book edited by: Paola Prete, ISBN 978-953-7619-79-4, pp. 414, March 2010, INTECH, Croatia, downloaded from SCIYO.COM
A review on Fog Computing technology

Out of the many computing and software oriented models that are being adopted by Computer Networking, Fog Computing has captured quite a wide audience in Research and Industry. There is a lot of confusion on its precise definition, position, role and application. The Internet of Things (IOT), todays' digitized intelligent connectivity domain, demands real time response in many applications and services. This renders Fog Computing a suitable platform for achieving goals of autonomy and efficiency. This paper is a justification of the concepts, interest, approaches, and practices of Fog Computing. It describes the need for adopting this new model and investigate its prime features by elucidating the scenarios for implementing it, thereby outlining its significance in the IoT world.
Sarcoidosis: social predictors of severity at presentation

To determine relationships among social predictors and sarcoidosis severity at presentation, demographic characteristics, socioeconomic status, and barriers to care, A Case-Control Etiologic Study of Sarcoidosis (ACCESS) was set up. Patients self-reported themselves to be Black or White and were tissue-confirmed incident cases aged ≥l8-yrs-old (n=696) who had received uniform assessment procedures within one of 10 medical centres and were studied using standardised questionnaires and physical, radiographical, and pulmonary function tests. Severity was measured by objective disease indicators, subjective measures of dyspnoea and short form-36 subindices. The results of the study showed that lower income, the absence of private or Medicare health insurance, and other barriers to care were associated with sarcoidosis severity at presentation, as were race, sex, and age. Blacks were more likely to have severe disease by objective measures, while women were more likely than males to report subjective measures of severity. Older individuals were more likely to have severe disease by both measures. In conclusion, it was found that low income and other financial barriers to care are significantly associated with sarcoidosis severity at presentation even after adjusting for demographic characteristics of race, sex, and age.
Breaking for commercials: characterizing mobile advertising

Mobile phones and tablets can be considered as the first incarnation of the post-PC era. Their explosive adoption rate has been driven by a number of factors, with the most signifcant influence being applications (apps) and app markets. Individuals and organizations are able to develop and publish apps, and the most popular form of monetization is mobile advertising. The mobile advertisement (ad) ecosystem has been the target of prior research, but these works typically focused on a small set of apps or are from a user privacy perspective. In this work we make use of a unique, anonymized data set corresponding to one day of traffic for a major European mobile carrier with more than 3 million subscribers. We further take a principled approach to characterize mobile ad traffic along a number of dimensions, such as overall traffic, frequency, as well as possible implications in terms of energy on a mobile device. Our analysis demonstrates a number of inefficiencies in today's ad delivery. We discuss the benefits of well-known techniques, such as pre-fetching and caching, to limit the energy and network signalling overhead caused by current systems. A prototype implementation on Android devices demonstrates an improvement of 50 % in terms of energy consumption for offline ad-sponsored apps while limiting the amount of ad related traffic.
Fracture mechanics, crack propagation and microhardness studies on flux grown ErAlO3 single crystals

Results on fracture mechanics and crack propagation have been obtained, making use of Vickers microhardness studies on two different crystallographic planes [(110) and (001)] of flux grown erbium aluminate crystals in the load ranging from 10-100 g. The variation of microhardness with load which is best explained by Hays and Kendall's law leads to the load independent values of hardness. Classification of cracks is dealt with and it is reported that the transition from Palmqvist to median types of cracks occurs at higher loads. The values of fracture toughness (K_C), and brittleness index (B_i) are calculated using median types of cracks.
Propagation measurements for fixed wireless loops (FWL) in a suburban region with foliage and terrain blockages

We present the results of propagation measurements at 2.485 GHz for fixed wireless loops. Path loss measurements were performed and characterized at 43 subscriber locations around a base station antenna located on top of Crawford Hill in Holmdel, NJ. This suburban location is characterized by rolling hills, foliage, and terrain blockages. Temporal and horizontal motion path loss fluctuations were found to be uncorrelated, each characterized by a different Ricean distribution. Lower r.m.s. delay spreads were obtained with directive subscriber antennas than with omni-directional antennas. No substantial gain loss (less than 2 dB) of subscribers' directive antennas was observed. The effects of trees, with foliage, surrounding the base station upon the path loss and the ratio of scattered power to specular power are also examined. The distance exponent of path loss versus distance (about 1.5) was observed to be less than free-space. Diffraction loss from hilltop trees, shadowing the base station, are suspected to be the cause. This loss decreases as the remote moves further away and comes out of the shadow. Scattered power from directions other than line-of-sight was observed to be as high as one half of the specular contribution when tree scattering near the base station was significant.
DI PARTI DEL DISCORSO ? ARE TWO HEADS BETTER THAN ONE ? EXPERIMENTS WITH ITALIAN PART-OF-SPEECH LABELLING

Descriviamo come combinare l’output di due sistemi per il part-of-speech tagging in italiano. Nonostante ci si aspetti che l’utilizzo di più d’una sorgente di informazione apporti beneficio, i nostri risultati mostrano che il miglioramento nella performance è solo marginale rispetto all’utilizzo di un tagger solo. Esperimenti futuri mireranno ad esplorare l’utilizzo di altri tagger e diverse tecniche di combinazione. There seems to be no obvious way to combine the output of a pair of off-the-shelf POS taggers in order to get improvement over single taggers’ accuracy. We combined two well-known retrainable taggers, C&C and TnT, using memory-based learning and tested the resulting tagger on Italian POS data, with respect to two different tagsets. Only for one tagset we observed a slight increase in performance, but the added value is small, and one could spare the effort and use as well a single tagger.
DARC shuttles inflammatory chemokines across the blood–brain barrier during autoimmune central nervous system inflammation

Trafficking of T cells into the CNS is a pathophysiological hallmark of multiple sclerosis. Using an in vitro model of the blood-brain barrier, Minten et al. reveal that the atypical chemokine receptor DARC shuttles inflammatory chemokines across the barrier, where they contribute to immune cell trafficking into the brain.
Physical modeling of the hysteresis in M0S2 transistors

The hysteresis in the gate transfer characteristics of transistors made of two-dimensional materials is one of the most obvious problems of this novel technology. Here we attempt for the first time to develop a physical modeling approach for describing this hysteresis in devices based on two-dimensional materials. Our model is based on a drift-diffusion TCAD simulation coupled to a previously established non-radiative multiphonon model for describing charge capture and emission events in the surrounding dielectrics, which are considered the main cause for the observed hysteresis. We validate our model against measurement data on a back-gated single-layer MoS2 transistor with SiO2 as a gate dielectric. Our study provides new insights into the physical reasons for the observed hysteresis, thereby leading the way towards an alleviation of this problem in future devices.
Photocatalytic degradation of the Acid Blue 113 textile azo dye in aqueous suspensions of four commercialized TiO2 samples

The apparent first-order rate constant, kapp, of the Acid Blue 113 textile azo dye photocatalytic disappearance in aqueous suspensions of 4 commercialized TiO2 samples (50 m2 g−1-Degussa P25; 54 m2 g− 1-Millennium Chemicals PC50; 250–270 m2 g−1-Sachtleben Chemie Hombikat UV100; 320 m2 g−1-Ishihara ST01) was determined from the decrease in the calibrated 566 nm-absorbance of the supernatant. Under the conditions used (1 liter-batch reactor; water-filtered irradiation from a Philips HPK 125-W high-pressure mercury lamp; [TiO2] = 1 g/L; [dye] = 70 mg/L), the kapp ranking was: UV100 > PC50 > P25 > ST01. The corresponding maximal difference in kapp was roughly equivalent to that caused by adding an optimal dose of H2O2 to the P25 suspension. Taking into account the dye adsorbed amount, qads, in the dark, it is deduced that the recombination rate kr of photogenerated charges was higher for poorly crystallized TiO2 samples, as expected; additionally, a low content of impurities is suggested to be at the origin of the low kr of UV100 relative to ST01. It is also argued that differences in the values of qads divided by the surface area, S, was less due to pores inaccessible to the dye than to thicker layers of surface tightly bound water for the samples with high S. A FTIR study showed that the dye weakly interacted with TiO2 and, however, remained the dominant adsorbed species during the degradation. This latter conclusion was in accord with the fact that the dye initial disappearance rates—directly measured or calculated from kapp—were almost equal, indicating that the intermediate products of degradation did not significantly compete with the remaining dye for active species.
Fast encounter-based synchronization for mobile devices

The large and growing number of computing devices used by individuals has caused the challenges of distributed storage to take on increased importance. In addition to desktops and laptops, portable devices, such as cell phones, digital cameras, iPods, and PDAs are capable of storing and sharing data. These devices’ mobility coupled with wireless networking capabilities allows them to opportunistically propagate data to other devices they might encounter, even if connectivity is unplanned and transient. To take advantage of such ad hoc connectivity, devices must have an efficient method for determining which files they hold in common and which versions must be propagated to achieve consistency. This paper presents new techniques for reducing the cost of this data synchronization operation by over an order of magnitude in many situations.
Variation of interfacial tension by nanoclay particles in oil-in-water emulsions

To investigate whether nanoclay particles vary with the interfacial tension of oil-in water emulsion, interfacial tension is measured using dynamic drop volume method. From the critical volume of a single droplet at the moment of detachment, interfacial tension is calculated based on the force balance between gravity force and capillary force. The interfacial tension of a droplet is reduced by the addition of nanoclay and the interfacial tension reduction is further varied depending on nanoclay type. The addition of hydrophilic nanoclay particles (5000 ppm) in an oil drop reduces the interfacial tension from 31.4 to 19.6 mN/m by interfacial localization. In the case of organically modified nanoclay (5000 ppm), interfacial tension is only slightly reduced from 31.4 to 26 mN/m. This study shows that nanoclay effectively reduces the interfacial tension of a droplet when nanoclay is located at the interface.
A Simple Recruitment Scheme of Multiple Nodes for Cooperative MAC

Physical (PHY) layer cooperation in a wireless network allows neighboring nodes to share their communication resources in order to create a virtual antenna array by means of distributed transmission and signal processing. A novel medium access control (MAC) protocol, called CoopMAC, has been recently proposed to integrate cooperation at the PHY layer with the MAC sublayer, thereby achieving substantial throughput and delay performance improvements. CoopMAC capitalizes on the broadcast nature of the wireless channel and rate adaptation, recruiting a single relay on the fly to support the communication of a particular source-destination pair. In this paper, we propose a cross-layer rate-adaptive design that opportunistically combines the recruitment of multiple cooperative nodes and carrier sensing multiple access with collision avoidance. We focus on a single-source single-destination setup, and develop a randomized cooperative framework, which is referred to as randomized CoopMAC (RCoopMAC). Thanks to the randomization of the coding rule, the RCoopMAC approach enables the blind participation of multiple relays at unison relying only on the mean channel state information (CSI) of the potential cooperating nodes, without introducing additional signaling overhead to coordinate the relaying process. The proposed RCoopMAC scheme is not only beneficial in substantially improving the link quality and therefore the sustainable data rates but, thanks to the decentralized and agnostic coding rule, it also allows to effectively recruit multiple relays in a robust fashion, i.e., even when the required mean CSI is partially outdated.
Model-independent determination of the astrophysical S factor in laser-induced fusion plasmas

In this paper, we present a new and general method for measuring the astrophysical S factor of nuclear reactions in laser-induced plasmas and we apply it to 2H(d,n)3He. The experiment was performed with the Texas Petawatt Laser, which delivered 150–270 fs pulses of energy ranging from 90 to 180 J to D2 or CD4 molecular clusters (where D denotes 2H). After removing the background noise, we used the measured time-of-flight data of energetic deuterium ions to obtain their energy distribution. We derive the S factor using the measured energy distribution of the ions, the measured volume of the fusion plasma, and the measured fusion yields. This method is model independent in the sense that no assumption on the state of the system is required, but it requires an accurate measurement of the ion energy distribution, especially at high energies, and of the relevant fusion yields. In the 2H(d,n)3He and 3He(d,p)4He cases discussed here, it is very important to apply the background subtraction for the energetic ions and to measure the fusion yields with high precision. While the available data on both ion distribution and fusion yields allow us to determine with good precision the S factor in the d+d casemore » (lower Gamow energies), for the d+3He case the data are not precise enough to obtain the S factor using this method. Our results agree with other experiments within the experimental error, even though smaller values of the S factor were obtained. This might be due to the plasma environment differing from the beam target conditions in a conventional accelerator experiment. « less
Association of Patients’ Geographic Origins with Viral Hepatitis Co-infection Patterns, Spain

To determine if hepatitis C virus seropositivity and active hepatitis B virus infection in HIV-positive patients vary with patients’ geographic origins, we studied co-infections in HIV-seropositive adults. Active hepatitis B infection was more prevalent in persons from Africa, and hepatitis C seropositivity was more common in persons from eastern Europe.
On correlated reaction sets and coupled reaction sets in metabolic networks

Two reactions are in the same "correlated reaction set" (or "Co-Set") if their fluxes are linearly correlated. On the other hand, two reactions are "coupled" if nonzero flux through one reaction implies nonzero flux through the other reaction. Flux correlation analysis has been previously used in the analysis of enzyme dysregulation and enzymopathy, while flux coupling analysis has been used to predict co-expression of genes and to model network evolution. The goal of this paper is to emphasize, through a few examples, that these two concepts are inherently different. In other words, except for the case of full coupling, which implies perfect correlation between two fluxes (R(2) = 1), there are no constraints on Pearson correlation coefficients (CC) in case of any other type of (un)coupling relations. In other words, Pearson CC can take any value between 0 and 1 in other cases. Furthermore, by analyzing genome-scale metabolic networks, we confirm that there are some examples in real networks of bacteria, yeast and human, which approve that flux coupling and flux correlation cannot be used interchangeably.