Miracle-dz/UniFAR-FTUs huggingface dataset:
Alpha1‐adrenergic stimulation selectively enhances endothelium‐mediated vasodilation in rat cremaster arteries

We have systematically investigated how vascular smooth muscle α1‐adrenoceptor activation impacts endothelium‐mediated vasodilation in isolated, myogenically active, rat cremaster muscle 1A arteries. Cannulated cremaster arteries were pressurized intraluminally to 70 mmHg to induce myogenic tone, and exposed to vasoactive agents via bath superfusion at 34°C. Smooth muscle membrane potential was measured via sharp microelectrode recordings in pressurized, myogenic arteries. The α1‐adrenergic agonist phenylephrine (25–100 nmol/L) produced further constriction of myogenic arteries, but did not alter the vasorelaxant responses to acetylcholine (0.3 μmol/L), SKA‐31 (an activator of endothelial Ca2+‐dependent K+ channels) (3 μmol/L) or sodium nitroprusside (10 μmol/L). Exposure to 0.25–1 μmol/L phenylephrine or 1 μmol/L norepinephrine generated more robust constrictions, and also enhanced the vasodilations evoked by acetylcholine and SKA‐31, but not by sodium nitroprusside. In contrast, the thromboxane receptor agonist U46619 (250 nmol/L) dampened responses to all three vasodilators. Phenylephrine exposure depolarized myogenic arteries, and mimicking this effect with 4‐aminopyridine (1 mmol/L) was sufficient to augment the SKA‐31‐evoked vasodilation. Inhibition of L‐type Ca2+ channels by 1 μmol/L nifedipine decreased myogenic tone, phenylephrine‐induced constriction and prevented α1‐adrenergic enhancement of endothelium‐evoked vasodilation; these latter deficits were overcome by exposure to 3 and 10 μmol/L phenylephrine. Mechanistically, augmentation of ACh‐evoked dilation by phenylephrine was dampened by eNOS inhibition and abolished by blockade of endothelial KCa channels. Collectively, these data suggest that increasing α1‐adrenoceptor activation beyond a threshold level augments endothelium‐evoked vasodilation, likely by triggering transcellular signaling between smooth muscle and the endothelium. Physiologically, this negative feedback process may serve as a “brake” to limit the extent of vasoconstriction in the skeletal microcirculation evoked by the elevated sympathetic tone.
Male courtship signals and female signal assessment in Photinus greeni fireflies

The evolutionary dynamic of courtship signaling systems is driven by the interaction between male trait distributions and female preferences. This interaction is complex because females may choose mates based on multiple components of male signals, and female preference functions may vary depending on mate availability, female reproductive state, and environmental conditions. In Photinus fireflies (Coleoptera: Lampyridae), flying males emit bioluminescent flash signals to locate sedentary females, which reply selectively to attractive male flash signals with their own response flash. In this study, we first examined temporal variation in the paired-pulse flash patterns produced by Photinus greeni males in the field and found significant among-male variation (∼70% of total variation) in interpulse intervals (IPIs). There was no significant relationship between male IPI and spermatophore size, suggesting that P. greeni male courtship signals do not provide females with reliable indicators of male material resources. In laboratory playback experiments, we presented P. greeni females with simulated flash signals to assess how IPI and pulse duration independently affected the likelihood of female flash response. We also examined the effects of female body mass and time during the mating season on female preference functions, hypothesizing that females would be less discriminating when they were heavier (more fecund) and when mate availability declined. We found that P. greeni females discriminated among signals within their species' range based primarily on flash pattern IPI. Neither the time during the mating season nor female weight altered female preference functions for IPI, although season did influence female response to pulse duration. These results reveal that P. greeni females discriminate among conspecific males based primarily on male IPIs, the same signal character previously shown to be important for firefly species recognition. Field playback experiments indicated that female responsiveness peaked near the average IPI given by males at different ambient temperatures, suggesting that fireflies exhibit temperature coupling similar to that seen in many acoustically signaling animals. Copyright 2006.
Cox model with interval‐censored covariate in cohort studies

In cohort studies the outcome is often time to a particular event, and subjects are followed at regular intervals. Periodic visits may also monitor a secondary irreversible event influencing the event of primary interest, and a significant proportion of subjects develop the secondary event over the period of follow‐up. The status of the secondary event serves as a time‐varying covariate, but is recorded only at the times of the scheduled visits, generating incomplete time‐varying covariates. While information on a typical time‐varying covariate is missing for entire follow‐up period except the visiting times, the status of the secondary event are unavailable only between visits where the status has changed, thus interval‐censored. One may view interval‐censored covariate of the secondary event status as missing time‐varying covariates, yet missingness is partial since partial information is provided throughout the follow‐up period. Current practice of using the latest observed status produces biased estimators, and the existing missing covariate techniques cannot accommodate the special feature of missingness due to interval censoring. To handle interval‐censored covariates in the Cox proportional hazards model, we propose an available‐data estimator, a doubly robust‐type estimator as well as the maximum likelihood estimator via EM algorithm and present their asymptotic properties. We also present practical approaches that are valid. We demonstrate the proposed methods using our motivating example from the Northern Manhattan Study.
Data Gathering and Energy Transfer Dilemma in UAV-Assisted Flying Access Network for IoT

Recently, Unmanned Aerial Vehicles (UAVs) have emerged as an alternative solution to assist wireless networks, thanks to numerous advantages they offer in comparison to terrestrial fixed base stations. For instance, a UAV can be used to embed a flying base station providing an on-demand nomadic access to network services. A UAV can also be used to wirelessly recharge out-of-battery ground devices. In this paper, we aim to deal with both data collection and recharging depleted ground Internet-of-Things (IoT) devices through a UAV station used as a flying base station. To extend the network lifetime, we present a novel use of UAV with energy harvesting module and wireless recharging capabilities. However, the UAV is used as an energy source to empower depleted IoT devices. On one hand, the UAV charges depleted ground IoT devices under three policies: (1) low-battery first scheme; (2) high-battery first scheme; and (3) random scheme. On the other hand, the UAV station collects data from IoT devices that have sufficient energy to transmit their packets, and in the same phase, the UAV exploits the Radio Frequency (RF) signals transmitted by IoT devices to extract and harvest energy. Furthermore, and as the UAV station has a limited coverage time due to its energy constraints, we propose and investigate an efficient trade-off between ground users recharging time and data gathering time. Furthermore, we suggest to control and optimize the UAV trajectory in order to complete its travel within a minimum time, while minimizing the energy spent and/or enhancing the network lifetime. Extensive numerical results and simulations show how the system behaves under different scenarios and using various metrics in which we examine the added value of UAV with energy harvesting module.
Use of a Ureido-Substituted Deoxycytidine Module for DNA Assemblies

ABSTRACT Ureido-substituted cytosine derivatives are promising for constructing self-assembly structures that can be applied to nanotechnology research. However, conventional cytosine modules achieve assembly in organic solvents. In this study, an N-phenylcarbamoyl deoxycytidine nucleoside was incorporated into a C-rich oligonucleotide to achieve self-assembly in aqueous solution. The results show that the capability of the module to form DNA assemblies varied depending on the number of modules incorporated. The deoxycytidine derivative has a potential application in the development of smart materials based on DNA assembly.
β”-(CNB-EDT-TTF)4BF4; Anion Disorder Effects in Bilayer Molecular Metals

The preparation and characterization of new salts based on the dissymmetrical TTF derivative CNB-EDT-TTF (cyanobenzene-ethylenedithio-tetrathiafulvalene) and BF4− anions, are reported. Depending on the electrocrystallization conditions salts with different stoichiometries, (CNB-EDT-TTF)BF4 and β”-(CNB-EDT-TTF)4BF4, can be obtained. The 1:1 salt is an electrical insulator isostructural to the ClO4 analogue previously described. The 4:1 salt is a new member of the family of 2D metals of this donor with different small anions X, (CNB-EDT-TTF)4X, characterized by a bilayer arrangement of the donors and it was obtained in a monoclinic polymorph with a β”-type donor packing pattern. The small anions in this compound are severely disordered between the donor bilayers, which present slightly larger lattice parameters than the isostructural ClO4 analogue. Both electrical conductivity and thermoelectric power measurements in single crystals denote metallic properties as predicted by electronic band structure calculations. As a consequence of the anion disorder the metallic regime of the electrical conductivity denotes electronic localization effects with a progressive increase of resistivity below ~25 K. Because of the larger lattice parameters the intermolecular interactions and electronic bandwidth are decreased compared to other (CNB-EDT-TTF)4X salts. The large and positive thermoelectric power S of this compound (~110 μV/K in the range 100–330 K) and its electrical conductivity σ = 20 S/cm at room temperature lead to a power factor S2σ = 24 μW/K2m, quite large among molecular conductors, placing these compounds as potential candidates for thermoelectric materials.
Effects of Food Prices on Under-five and Infant Mortality Rates in Sub-Saharan Africa

Over the years, the rising food prices coupled with the prevailing food insecurity in the entire Sub-Saharan Africa region are perceived to be having debilitating effects on nutrition and health outcomes. This paper therefore examines the impact of rising food prices on under-five and infant mortality rates in 31 selected sub-Saharan African countries for the period 2001-2012 using the fixed effects, random effects, difference GMM and the system GMM. The results show that rising food prices exert significant adverse effects on both infant and under-five mortality rates in Sub-Saharan Africa. The paper suggests the need for increased government’s efforts toward increased food supply and urgent nutritional support involving nutrient-rich-food items to the target groups
A Framework of Covariance Projection on Constraint Manifold for Data Fusion †

A general framework of data fusion is presented based on projecting the probability distribution of true states and measurements around the predicted states and actual measurements onto the constraint manifold. The constraint manifold represents the constraints to be satisfied among true states and measurements, which is defined in the extended space with all the redundant sources of data such as state predictions and measurements considered as independent variables. By the general framework, we mean that it is able to fuse any correlated data sources while directly incorporating constraints and identifying inconsistent data without any prior information. The proposed method, referred to here as the Covariance Projection (CP) method, provides an unbiased and optimal solution in the sense of minimum mean square error (MMSE), if the projection is based on the minimum weighted distance on the constraint manifold. The proposed method not only offers a generalization of the conventional formula for handling constraints and data inconsistency, but also provides a new insight into data fusion in terms of a geometric-algebraic point of view. Simulation results are provided to show the effectiveness of the proposed method in handling constraints and data inconsistency.
Corpus Annotation and Inference with Episodic Logic Type Structure Gene

A growing interest in tasks involving language understanding by the NLP community has led to the need for effective semantic parsing and inference. Modern NLP systems use semantic representations that do not quite fulfill the nuanced needs for language understanding: adequately modeling language semantics, enabling general inferences, and being accurately recoverable. This document proposes a plan to create a semantic parser of an initial form for a logic that balances these needs. We present a plan for creating a high-precision semantic parser for an underspecified logical form (ULF) from annotated texts and which fits into further processing for ambiguity resolution. The semantic representation is grounded in Episodic Logic (EL) and ULF fully resolves the type structure with respect to EL while leaving further issues such as scope, word sense, and anaphora in a restricted, but unresolved, state. We hypothesize that a divide-and-conquer approach to semantic parsing will lead to higher quality semantic analyses by simplifying the problem, both from the perspective of researchers careful to handle linguistic phenomena appropriately and from the perspective of building an accurate semantic parser. In addition to creating this parser, this project aims to quantify the use of parsed ULFs for making inferences directly. ULFs enable structural inferences, including Natural Logic-like inferences, without further resolution, which are useful for downstream tasks such as dialogue and question answering.
Discussion: Reporting and Calibration of Post-Bomb 14C Data

The definitive paper by Stuiver and Polach (1977) established the conventions for reporting of radiocarbon data for chronological and geophysical studies based on the radioactive decay of 14C in the sample since the year of sample death or formation. Several ways of reporting 14C activity levels relative to a standard were also established, but no specific instructions were given for reporting nuclear weapons-testing (post-bomb) 14C levels in samples. Because the use of post-bomb 14C is becoming more prevalent in forensics, biology, and geosciences, a convention needs to be adopted. We advocate the use of fraction modern with a new symbol F14C to prevent confusion with the previously used Fm, which may or may not have been fractionation-corrected. We also discuss the calibration of post-bomb 14C samples and the available data sets and compilations, but do not give a recommendation for a particular data set.
The Dark Side of the Light Show: Predators of Fireflies in the Great Smoky Mountains

In the Great Smoky Mountains of East Tennessee, the Light Show is a popular seasonal attraction created by thousands of courting male Photinus carolinus fireflies (Coleoptera: Lampyridae) that flash in synchrony to locate females. This study was undertaken to provide a temporal snapshot of whether invertebrate predators are active within these dense and conspicuous firefly breeding aggregations. In addition, we examined whether female Photuris fireflies, which are specialist predators on other fireflies, show any feeding preferences within the diverse local firefly fauna. A field survey revealed a surprisingly diverse suite of generalist insectivores feeding on fireflies within P. carolinus breeding aggregations. In addition, laboratory studies revealed major differences in prey consumption rates when Photuris predators were given access to several lampyrid taxa. This suite of generalist and specialist predators appears to create a complex selective landscape that is predicted to be a powerful force shaping the evolution of firefly defenses.
Current diagnosis and treatment of cryptococcal meningitis without acquired immunodeficiency syndrome

Cryptococcal meningitis (CM) is a central nervous system infectious disease caused by Cryptococcus. It is the most common fungal infection in the central nervous system, accounting for about 48% of fungal infection. The disease occurs mainly in acquired immunodeficiency syndrome (AIDS) patients and concentrates in the immunocompromised people without AIDS. There are nearly one million new cases of CM each year, and about 70% of them died. In China, CM occurs mainly in people without AIDS and there is an increasing trend in recent years. Early diagnosis and treatment is the key to reducing morbidity and mortality associated with CM. The diagnosis mainly depends on laboratory examination such as morphological examination, fungal culture and antigen detection. History, clinical manifestation and imaging examination are the important parts of auxiliary examination. The initial combined antifungal treatment is emphasized, and the principle of fractional treatment including induction, consolidation and maintenance therapy should be followed. The high intracranial pressure must be reduced actively at the same time. In addition, it is proved that the novel immunotherapy combined with antifungal agents can improve the curative effect and limit the chance of antimicrobial resistance. Large-scale clinical trials are needed for further study.
Patterns of bryophyte succession in a 160-year chronosequence in deciduous and coniferous forests of boreal Alaska

Bryophytes are dominant components of boreal forest understories and play a large role in regulating soil microclimate and nutrient cycling. Therefore, shifts in bryophyte communities have the potential to affect boreal forests’ ecosystem processes. We investigated how bryophyte communities varied in 83 forest stands in interior Alaska that ranged in age (since fire) from 8 to 163 years and had canopies dominated by deciduous broadleaf (Populus tremuloides Michx. or Betula neoalaskana Sarg.) or coniferous trees (Picea mariana Mill B.S.P.). In each stand, we measured bryophyte community composition, along with environmental variables (e.g., organic layer depth, leaf litter cover, moisture). Bryophyte communities were initially similar in deciduous vs. coniferous forests but diverged in older stands in association with changes in organic layer depth and leaf litter cover. Our data suggest two tipping points in bryophyte succession: one at the disappearance of early colonizing taxa 20 years after fire and an.
Soft, flexible micromanipulators comprising polypyrrole trilayer microactuators

Within the areas of cell biology, biomedicine and minimal invasive surgery, there is a need for soft, flexible and dextrous biocompatible manipulators for handling biological objects, such as single cells and tissues. Present day technologies are based on simple suction using micropipettes for grasping objects. The micropipettes lack the possibility of accurate force control, nor are they soft and compliant and may thus cause damage to the cells or tissue. Other micromanipulators use conventional electric motors however the further miniaturization of electrical motors and their associated gear boxes and/or push/pull wires has reached its limits. Therefore there is an urgent need for new technologies for micromanipulation of soft biological matter. We are developing soft, flexible micromanipulators such as micro- tweezers for the handling and manipulation of biological species including cells and surgical tools for minimal invasive surgery. Our aim is to produce tools with minimal dimensions of 100 μm to 1 mm in size, which is 1-2 orders of magnitude smaller than existing technology. We present newly developed patterning and microfabrication methods for polymer microactuators as well as the latest results to integrate these microactuators into easy to use manipulation tools. The outcomes of this study contribute to the realisation of low-foot print devices articulated with electroactive polymer actuators for which the physical interface with the power source has been a significant challenge limiting their application. Here, we present a new bottom-up microfabrication process. We show for the first time that such a bottom-up fabricated actuator performs a movement in air. This is a significant step towards widening the application areas of the soft microactuators.
Alu-Alu Fusion Sequences Identified at Junction Sites of Copy Number Amplified Regions in Cancer Cell Lines

Alu elements are short, ∼300-bp stretches of DNA and are the most abundant repetitive elements in the human genome. A large number of chromosomal rearrangements mediated by Alu-Alu recombination have been reported in germline cells, but only a few in somatic cells. Cancer development is frequently accompanied by various chromosomal rearrangements including gene amplification. To explore an involvement of Alu-Alu fusion in gene amplification events, we determined 20 junction site sequences of 5 highly amplified regions in 4 cancer cell lines. The amplified regions exhibited a common copy number profile: a stair-like increase with multiple segments, which is implicated in the breakage-fusion-bridge (BFB) cycle-mediated amplification. All of the sequences determined were characterized as head-to-head or tail-to-tail fusion of sequences separated by 1–5 kb in the genome sequence. Of these, 4 junction site sequences were identified as Alu-Alu fusions between inverted, paired Alu elements with relatively long overlapping sequences of 17, 21, 22, and 24 bp. Together with genome mapping data of Alu elements, these findings suggest that when breakages occur at or near inverted, paired Alu elements in the process of BFB cycle-mediated amplification, sequence homology of Alu elements is frequently used to repair the broken ends.
Tetrahydrohyperforin prevents articular cartilage degeneration and affects autophagy in rats with osteoarthritis

Osteoarthritis (OA) is a highly prevalent disease, which is associated with extracellular matrix degradation and cell death in articular cartilage. The aim of the present study was to identify whether tetrahydrohyperforin (IDN5706) ameliorates the degeneration of articular cartilage and affects autophagy in OA. The rat model of experimental OA was induced by intra-articular injection of collagenase solution. IDN5706 was administered intragastrically to rats for 6 weeks. Histopathological changes in articular cartilage were examined using hematoxylin and eosin (H&E) and safranin O staining, and Mankin scoring systems. The effect of IDN5706 on autophagy was examined using western blotting. ELISA was performed to detect cartilage inflammation. H&E and safranin O staining, Mankin scores, and electron microscopy indicated that IDN5706 could lessen the degeneration of articular cartilage in OA rats. In addition, western blotting revealed that IDN5706 treatment may activate the suppressed autophagy in OA rats. In conclusion, the present study demonstrated that IDN5706 was able to reduce the severity of experimental OA, alleviate the degeneration of articular cartilage, and affect autophagy in OA model rats.