Miracle-dz/UniFAR-FTUs huggingface dataset:
Towards Chl-a bloom understanding by EM-based unsupervised event detection

Marine water quality monitoring and subsequent management require to know when a specific event like harmful algae bloom may occur and which environmental conditions and pressures lead to this event. So, event detection and its dynamic understanding are crucial to adapt strategy. An algorithm is proposed to identify curves mixture and their dynamics features — initiation, duration, peaks and ends of the event. The approach is fully unsupervised, it requires no tuning parameters and is based on Expectation Maximization process to estimate the most robust mixture according to fixed criteria. A complete framework is proposed to deal with a univariate time series with missing data. The approach is applied on Chlorophyll-a series collected weekly since 1989. Chlorophyll-a is a proxy of the phytoplankton biomass. The results are promising according to the phytoplankton composition knowledge, collected at lower frequency, and allowing to discuss about the annual variability of phytoplankton dynamics.
Combinatorial Cost Sharing

We introduce a combinatorial variant of the cost sharing problem: several services can be provided to each player and each player values every combination of services differently. A publicly known cost function specifies the cost of providing every possible combination of services. A combinatorial cost sharing mechanism is a protocol that decides which services each player gets and at what price. We look for dominant strategy mechanisms that are (economically) efficient and cover the cost, ideally without overcharging (i.e., budget balanced). Note that unlike the standard cost sharing setting, combinatorial cost sharing is a multi-parameter domain. This makes designing dominant strategy mechanisms with good guarantees a challenging task. We present the Potential Mechanism -- a combination of the VCG mechanism and a well-known tool from the theory of cooperative games: Hart and Mas-Colell's potential function. The potential mechanism is a dominant strategy mechanism that always covers the incurred cost. When the cost function is subadditive the same mechanism is also approximately efficient. Our main technical contribution shows that when the cost function is submodular the potential mechanism is approximately budget balanced in three settings: supermodular valuations, symmetric cost function and general symmetric valuations, and two players with general valuations.
The Impact of Visual Memory Deficits on Academic Achievement in Children and Adolescents.

Memory assessment can often alert practitioners and educators to learning problems children may be experiencing. Results of a memory assessment may indicate that a child has a specific memory deficit in verbal memory, visual memory, or both. Deficits in visual or verbal modes of memory could potentially have adverse effects on academic achievement. Past research in the area of memory and academics have shown mixed results, with some studies showing correlations between visual or verbal memory deficits and patterns of academic achievement and other studies showing evidence there is not a predictable pattern. The purpose of the present study was to examine the effects of visual memory deficits upon children’s academic achievement in reading, spelling, and arithmetic. Archival data of children’s comprehensive neuropsychological evaluations conducted at a private neuropsychology clinic were reviewed and analyzed to determine if children who showed evidence of deficits in visual memory differed significantly on academic achievement measures from a comparison group of children who did not have visual or verbal memory deficits. Overall, the results of this study found that individuals with visual memory deficits showed significantly weaker performance in arithmetic achievement compared to children without memory deficits. Children with visual memory deficits did not differ significantly from children without memory deficits on reading or spelling achievement.
Response of unmyelinated (C) polymodal nociceptors to thermal stimuli applied to monkey's face

1. The response of C polymodal nociceptors to thermal and mechanical stimuli applied to the monkey's face was recorded extracellulary in the trigeminal ganglion in rhesus monkeys anesthetized with sodium pentobarbital. Conduction velocities, determined from electrical stimulation of receptive fields (RFs), were in the range for unmyelinated C fibers (mean=0.82 m/s, n=20; SD=+/-0.17). With two exceptions cutaneous RFs were single spots (median=2 mm2; n=37) and usually were identical for thermal and mechanical stimuli. The median force threshold for the sample of units was 1.2 g (von Frey technique; n = 39; range = 0.07-8.5 g). 2. Discharges to thermal stimuli were investigated with a feedback-controlled contact thermode which permitted temperature changes less than or equal 12.0 degrees C/s. Thermal thresholds ranged from 38 degree to 49 degree C (median=46 degrees C; n=37), and maximum discharge frequencies were obtained in the noxious heat range (45-55 degrees C). For a graded series of 5 s duration stimuli from an adapting temperature of 35 degrees C, the number of impulses increased as a monotonic function of stimulus intensity over the range from threshold temperature to 50-53 degrees C. Many stimulus-response functions were positively accelerated, and linear regression analyses showed that most units examined were best fit by nonlinear functions. 3. The typical pattern of activity to 5 s duration temperature shifts into the noxious heat range was a short accelerating burst of impulses followed by deceleration to a lower rate of discharge prior to termination of the stimulus. The temporal profile of the discharge of impulses was virtually identical at different adapting temperatures. In units tested with 30 s duration stimuli at 2-6 degrees C above threshold, the mean frequency of discharge during the final 25 s was 1.46 impulses/s (n=6; SD=+/-0.89). 4. Application of noxious heat stimuli a few degrees above threshold temperature typically sensitized or enhanced the response of the unit to subsequent application of heat stimuli. The signs of sensitization consisted of a decrease in threshold temperature, increased frequency of discharge, decreased latency to the first impulse, and afterdischarges. Units failed to respond throughout the duration of 30 s stimuli if the final temperature exceeded 50 degrees C. Depressed responses were sometimes produced by application of intense (greater than or equal 55 degrees C) stimuli, presumably as a result of partial inactivation of the receptor. 5. In a correlative analysis, the latency and pattern of discharge in a sample of units were compared with escape responses in two monkeys to temperature shifts into the noxious heat range (49 and 51 degrees C). The analysis revealed that the discharge of C polymodal nociceptors alone cannot account for fast escape responses, but the discharge may contribute to escape responses which occur more than 3.5 s after the onset of stimulation.
Asynchronous distributed generation system based on asymmetrical cascaded multilevel inverter

An asynchronous distributed generation (DG) single-phase system is proposed. It is based on an asymmetrical cascaded multilevel inverter with 19 levels and it is supplied by asynchronous voltage sources. It is possible to operate continuously the proposed GD system during the grid-connected or the stand-alone modes. Details about its operation modes are presented. A prototype of the proposed GD system has been implemented on a fixed-point DSP TMS320F2812. An injection of only active power into the grid utility and an uninterrupted load supply have been pursued. Simulation and experimental results presents the performance of the proposed GD system.
Dissémination dans les réseaux de capteurs avec puits mobiles

Dans cet article, nous proposons une nouvelle structure virtuelle permettant une dissemination efficace dans les reseaux de capteurs avec puits mobiles. Nous etudions analytiquement le cout de communication dans le pire cas. Ensuite, nous simulons et comparons notre proposition a d'autres techniques proposees dans la litterature.
An automated approach to generating efficient constraint solvers

Combinatorial problems appear in numerous settings, from timetabling to industrial design. Constraint solving aims to find solutions to such problems efficiently and automatically. Current constraint solvers are monolithic in design, accepting a broad range of problems. The cost of this convenience is a complex architecture, inhibiting efficiency, extensibility and scalability. Solver components are also tightly coupled with complex restrictions on their configuration, making automated generation of solvers difficult. We describe a novel, automated, model-driven approach to generating efficient solvers tailored to individual problems and present some results from applying the approach. The main contribution of this work is a solver generation framework called Dominion, which analyses a problem and, based on its characteristics, generates a solver using components chosen from a library. The key benefit of this approach is the ability to solve larger and more difficult problems as a result of applying finer-grained optimisations and using specialised techniques as required.
Dewi Jones Self-archive of publications

-In this paper, the approach of Generalized Predictive Control (GPC) is applied to a multivariable model of the Dinorwig pumped storage hydroelectric power station. The response of the system with constrained predictive control is compared with the classic PI controller as currently implemented. The results show that GPC offers significantly better performance across the plant’s operating range. It is shown that fixed-parameter, constrained GPC produces a faster primary response when the station is operating with a single unit while preserving stability as the operating conditions change when multiple units are on-line.
Protocol design and stability analysis of cooperative cognitive radio users

A single cognitive radio transmitter-receiver pair shares the spectrum with two primary users communicating with their respective receivers. Each primary user has a local traffic queue, whereas the cognitive user has three queues; one storing its own traffic while the other two are relaying queues used to store primary relayed packets admitted from the two primary users. A new cooperative cognitive medium access control protocol for the described network is proposed, where the cognitive user exploits the idle periods of the primary spectrum bands. Traffic arrival to each relaying queue is controlled using a tuneable admittance factor, while relaying queues service scheduling is controlled via channel access probabilities assigned to each queue based on the band of operation. The stability region of the proposed protocol is characterized shedding light on its maximum expected throughput. Numerical results demonstrate the performance gains of the proposed cooperative cognitive protocol.
Pharmacological evidence for the role of RAR in axon guidance and embryonic development of a protostome species

Retinoic acid (RA), the active metabolite of vitamin A, functions through nuclear receptors, one of which is the retinoic acid receptor (RAR). Though the RAR is essential for various aspects of vertebrate development, little is known about the role of RAR in nonchordate invertebrates. Here, we examined the potential role of an invertebrate RAR in mediating chemotropic effects of retinoic acid. The RAR of the protostome Lymnaea stagnalis is present in the growth cones of regenerating cultured motorneurons, and a synthetic RAR agonist (EC23), was able to mimic the effects of retinoic acid in inducing growth cone turning. We also examined the ability of the natural retinoids, all‐trans RA and 9‐cis RA, as well as the synthetic RAR agonists, to disrupt embryonic development in Lymnaea. Developmental defects included delays in embryo hatching, arrested eye, and shell development, as well as more severe abnormalities such as halted development. Developmental defects induced by some (but not all) synthetic RAR agonists were found to mimic those induced by addition of high concentrations of the natural retinoid isomers. These pharmacological data support a possible physiological role for the RAR in axon guidance and embryonic development of an invertebrate protostome species.
Evaluation of the statistical delay quality model

In this paper we introduce a quality model that reflects fabrication process quality, design delay margin, and test timing accuracy. The model provides a measure that can predict the level of chip defects that cause delay failure, including marginal delay. We can therefore use the model to make test vectors that are effective in terms of both testing cost and chip quality. The results of experiments using ISCAS89 benchmark data and some large industrial design data reflect various characteristics of our statistical delay quality model.
Evaluating the Genre Classification Performance of Lyrical Features Relative to Audio, Symbolic and Cultural Features

T his paper describes experimental research investigating the genre classification utility of combining features extracted from lyrical, audio, symbolic and cultural sources of musical information. It was found that cultural features consisting of information extracted from both web searches and mined listener tags were particularly effective, with the result that classification accuracies were achieved that compare favorably with the current state of the art of musical genre classification. It was also found that features extracted from lyrics were less effective than the other feature types. Finally, it was found that, with some exceptions, combining feature types does improve classification performance. The new lyricFetcher and jLyrics software are also presented as tools that can be used as a framework for developing more effective classification methodologies based on lyrics in the future.
General analysis of LARGE Volume Scenarios with string loop moduli stabilisation

We study the topological conditions for general Calabi-Yaus to get a non-supersymmetric AdS exponentially large volume minimum of the scalar potential in flux compactifications of IIB string theory. We show that negative Euler number and the existence of at least one blow-up mode resolving point-like singularities are necessary and sufficient conditions for moduli stabilisation with exponentially large volumes. We also analyse the general effects of string loop corrections on this scenario. While the combination of α' and nonperturbative corrections are sufficient to stabilise blow-up modes and the overall volume, quantum corrections are needed to stabilise other directions transverse to the overall volume. This allows exponentially large volume minima to be realised for fibration Calabi-Yaus, with the various moduli of the fibration all being stabilised at exponentially large values. String loop corrections may also play a role in stabilising 4-cycles which support chiral matter and cannot enter directly into the non-perturbative superpotential. We illustrate these ideas by studying the scalar potential for various Calabi-Yau three-folds including K3 fibrations and briefly discuss the potential phenomenological and cosmological implications of our results.
First results of a highly granulated 3D CdTe detector module for PET

We present the performance of a highly granulated 3D detector module for PET, consisting of a stack of pixelated CdTe detectors. Each detector module has 2 cm × 2 cm × 2 cm of CdTe material, subdivided into 4000 voxels, where each voxel has size 1 mm × 1 mm × 2 mm and is connected to its own read-out electronics via a BiSn solder ball. Each read-out channel consists of a preamp, a discriminator, a shaper, a peak-and-hold circuit and a 10 bits SAR ADC. The preamp has variable gain where at the maximum gain the ADC resolution is equivalent to 0.7 keV. Each ASIC chip reads 100 CdTe pixel channels and has one TDC to measure the time stamp of the triggered events, with a time resolution of less than 1 ns. With the bias voltage set at −250 V mm−1 and for 17838 working channels out of a total of 20 000, we have obtained an average energy resolution of 2.2% FWHM for 511 keV photons. For 511 keV photons that have undergone Compton scattering, we measured an energy resolution of 3.2% FWHM. A timing resolution for PET coincidence events of 60 ns FWHM was found.
Memory-enhanced univariate marginal distribution algorithms for dynamic optimization problems

Several approaches have been developed into evolutionary algorithms to deal with dynamic optimization problems, of which memory and random immigrants are two major schemes. This paper investigates the application of a direct memory scheme for univariate marginal distribution algorithms (UMDAs), a class of evolutionary algorithms, for dynamic optimization problems. The interaction between memory and random immigrants for UMDAs in dynamic environments is also investigated. Experimental study shows that the memory scheme is efficient for UMDAs in dynamic environments and that the interactive effect between memory and random immigrants for UMDAs in dynamic environments depends on the dynamic environments.
Polyunsaturated Fatty Acids Inhibit T Cell Signal Transduction by Modification of Detergent-insoluble Membrane Domains

Polyunsaturated fatty acids (PUFAs) exert immunosuppressive effects, but the molecular alterations leading to T cell inhibition are not yet elucidated. Signal transduction seems to involve detergent-resistant membrane domains (DRMs) acting as functional rafts within the plasma membrane bilayer with Src family protein tyrosine kinases being attached to their cytoplasmic leaflet. Since DRMs include predominantly saturated fatty acyl moieties, we investigated whether PUFAs could affect T cell signaling by remodeling of DRMs. Jurkat T cells cultured in PUFA-supplemented medium showed a markedly diminished calcium response when stimulated via the transmembrane CD3 complex or glycosyl phosphatidylinositol (GPI)- anchored CD59. Immunofluorescence studies indicated that CD59 but not Src family protein tyrosine kinase Lck remained in a punctate pattern after PUFA enrichment. Analysis of DRMs revealed a marked displacement of Src family kinases (Lck, Fyn) from DRMs derived from PUFA-enriched T cells compared with controls, and the presence of Lck in DRMs strictly correlated with calcium signaling. In contrast, GPI-anchored proteins (CD59, CD48) and ganglioside GM1, both residing in the outer membrane leaflet, remained in the DRM fraction. In conclusion, PUFA enrichment selectively modifies the cytoplasmic layer of DRMs and this alteration could underlie the inhibition of T cell signal transduction by PUFAs.
Discovering and Exploiting Deterministic Label Relationships in Multi-Label Learning

This work presents a probabilistic method for enforcing adherence of the marginal probabilities of a multi-label model to automatically discovered deterministic relationships among labels. In particular we focus on discovering two kinds of relationships among the labels. The first one concerns pairwise positive entailment: pairs of labels, where the presence of one implies the presence of the other in all instances of a dataset. The second concerns exclusion: sets of labels that do not coexist in the same instances of the dataset. These relationships are represented as a deterministic Bayesian network. Marginal probabilities are entered as soft evidence in the network and through probabilistic inference become consistent with the discovered knowledge. Our approach offers robust improvements in mean average precision compared to the standard binary relevance approach across all 12 datasets involved in our experiments. The discovery process helps interesting implicit knowledge to emerge, which could be useful in itself.
Instrumentation-based music similarity using sparse representations

This paper describes a novel music similarity calculation method that is based on the instrumentation of music pieces. The approach taken here is based on the idea that sparse representations of musical audio signals are a rich source of information regarding the elements that constitute the observed spectra. We propose a method to extract feature vectors based on sparse representations and use these to calculate a similarity measure between songs. To train a dictionary for sparse representations from a large amount of training data, a novel dictionary-initialization method based on agglomerative clustering is proposed. An objective evaluation shows that the new features improve the performance of similarity calculation compared to the standard mel-frequency cepstral coefficients features.
An Integrated Physical and Genetic Map of the Rice Genome

Rice was chosen as a model organism for genome sequencing because of its economic importance, small genome size, and syntenic relationship with other cereal species. We have constructed a bacterial artificial chromosome fingerprint–based physical map of the rice genome to facilitate the whole-genome sequencing of rice. Most of the rice genome (∼90.6%) was anchored genetically by overgo hybridization, DNA gel blot hybridization, and in silico anchoring. Genome sequencing data also were integrated into the rice physical map. Comparison of the genetic and physical maps reveals that recombination is suppressed severely in centromeric regions as well as on the short arms of chromosomes 4 and 10. This integrated high-resolution physical map of the rice genome will greatly facilitate whole-genome sequencing by helping to identify a minimum tiling path of clones to sequence. Furthermore, the physical map will aid map-based cloning of agronomically important genes and will provide an important tool for the comparative analysis of grass genomes.
Trivalent heat-labile- and heat-stable-enterotoxin probe conjugated with horseradish peroxidase for detection of enterotoxigenic Escherichia coli by hybridization

A 1,268-bp polynucleotide probe for heat-labile and heat-stable enterotoxins (LTh, STIa, STIb) was conjugated with horseradish peroxidase (HRP). The HRP-conjugated trivalent probe was applied to the detection of enterotoxigenic Escherichia coli (ETEC) by colony and stool hybridizations. The binding of the probe to its targets was assayed by the addition of HRP substrates hydrogen peroxide and luminol in the presence of an enhancer, and the chemiluminescence was recorded by exposure to X-ray film. Slot blot hybridization demonstrated that the HRP-conjugated trivalent probe specifically hybridized with the DNA isolated from ETEC strains. The trivalent probe also specifically identified bacterial colonies of ETEC that produced LTh, STIa, STIb, LTh-STIa, or LTh-STIb. Treatment of targets with sodium dodecyl sulfate and proteinase K remarkably reduced nonspecific hybridization to DNAs of non-ETEC strains. Furthermore, this probe was able to detect stool specimens seeded with 10(2) original ETEC cells per 5 mg of feces. These results suggest that the HRP-conjugated trivalent probe is a candidate for use in the clinical laboratory to detect ETEC.