Miracle-dz/UniFAR-FTUs huggingface dataset:
Effect of settled diatom‐aggregates on benthic nitrogen cycling

The marine sediment hosts a mosaic of microhabitats. Recently it has been demonstrated that the settlement of phycodetrital aggregates can induce local changes in the benthic O2 distribution due to confined enrichment of organic material and alteration of the diffusional transport. Here, we show how this microscale O2 shift substantially affects benthic nitrogen cycling. In sediment incubations, the settlement of diatom‐aggregates markedly enhanced benthic O2 and NO3− consumption and stimulated NO2− and NH4+ production. Oxygen microprofiles revealed the rapid development of anoxic niches within and underneath the aggregates. During 120 h following the settling of the aggregates, denitrification of NO3− from the overlying water increased from 13.5 μmol m−2 h−1 to 24.3 μmol m−2 h−1, as quantified by 15N enrichment experiment. Simultaneously, N2 production from coupled nitrification‐denitrification decreased from 33.4 μmol m−2 h−1 to 25.9 μmol m−2 h−1, probably due to temporary inhibition of the benthic nitrifying community. The two effects were of similar magnitude and left the total N2 production almost unaltered. At the aggregate surface, nitrification was, conversely, very efficient in oxidizing NH4+ liberated by mineralization of the aggregates. The produced NO3− was preferentially released into the overlying water and only a minor fraction contributed to denitrification activity. Overall, our data indicate that the abrupt change in O2 microdistribution caused by aggregates stimulates denitrification of NO3− from the overlying water, and loosens the coupling between benthic nitrification and denitrification both in time and space. The study contributes to expanding the conceptual and quantitative understanding of how nitrogen cycling is regulated in dynamic benthic environments.
Rapid X-ray variability properties during the unusual very hard state in neutron-star low-mass X-ray binaries

Here, we study the rapid X-ray variability (using XMM-Newton observations) of three neutron-star low-mass X-ray binaries (1RXS J180408.9-342058, EXO 1745-248 and IGR J18245-2452) during their recently proposed very hard spectral state. All our systems exhibit a strong to very strong noise component in their power density spectra (rms amplitudes ranging from 34 per cent to 102 per cent) with very low characteristic frequencies (as low as 0.01 Hz). These properties are more extreme than what is commonly observed in the canonical hard state of neutron-star low-mass X-ray binaries observed at X-ray luminosities similar to those we observe from our sources. This suggests that indeed the very hard state is a spectral-timing state distinct from the hard state, although we argue that the variability behaviour of IGR J18245-2452 is very extreme and possibly this source was in a very unusual state. We also compare our results with the rapid X-ray variability of the accreting millisecond X-ray pulsars IGR J00291+5934 and Swift J0911.9-6452 (also using XMM-Newton data) for which previously similar variability phenomena were observed. Although their energy spectra (as observed using the Swift X-ray telescope) were not necessarily as hard (i.e. for Swift J0911.9-6452) as for our other three sources, we conclude that likely both sources were also in very similar state during their XMM-Newton observations. This suggests that different sources that are found in this new state might exhibit different spectral hardness and one has to study both the spectral and the rapid variability to identify this unusual state.
Study of the martensite structure at the weld interface and the fracture toughness of dissimilar metal joints

In austenitic-ferritic dissimilar metal welded joints, the content of alloying elements in the transition zone varies continuously from the heat-affected zone (HAZ) to the weld metal. Due to the low level of Ni content, a martensite layer is formed in this zone during the welding process. The Charpy impact test performed previously by other researchers indicated that the martensite layer was the weakest zone in toughness in the joints. In this study, color metallography and transmission electron microscope (TEM) analysis were used to show the martensite structures at the weld interface. The results show that the structures of the martensite layer at the weld interface are lath martensite. The martensite starting points vary with the distance from the fusion line and are controlled by composition gradient. The boundary of the transition zone could be divided into two types: the blurred type, and the sharp type, which are controlled by diffusion of elements. A simulation test, in which specimens were prepared by casting steels in accordance with the compositions of the martensite layer, was conducted to evaluate the fracture toughness of the martensite layer. The experiments were also made to investigate the distribution of toughness in the different regions of themore » joints. The results show that the weakest region in toughness in the dissimilar metal joints is not the martensite layer but the overheated zone in HAZ. « less
CABG Surgery Remains the best Option for Patients with Left Main Coronary Disease in Comparison with PCI-DES: Meta-Analysis of Randomized Controlled Trials

Objective To compare the safety and efficacy of coronary artery bypass grafting (CABG) with percutaneous coronary intervention (PCI) using drug-eluting stents (DES) in patients with unprotected left main coronary artery (ULMCA) disease. Methods MEDLINE, EMBASE, CENTRAL/CCTR, SciELO, LILACS, Google Scholar and reference lists of relevant articles were searched for clinical studies that reported outcomes at 1-year follow-up after PCI with DES and CABG for the treatment of ULMCA stenosis. Five studies fulfilled our eligibility criteria and they included a total of 4.595 patients (2.298 for CABG and 2.297 for PCI with DES). Results At 1-year follow-up, there was no significant difference between CABG and DES groups concerning the risk for death (risk ratio [RR] 0.973, P=0.830), myocardial infarction (RR 0.694, P=0.148), stroke (RR 1.224, P=0.598), and major adverse cerebrovascular and cardiovascular events (RR 0.948, P=0.680). The risk for target vessel revascularization (TVR) was significantly lower in the CABG group compared to the DES group (RR 0.583, P<0.001). It was observed no publication bias regarding the outcomes, but only the outcome TVR was free from substantial statistical heterogeneity of the effects. In the meta-regression, there was evidence that the factor "female gender" modulated the effect regarding myocardial infarction rates, favoring the CABG strategy. Conclusion CABG surgery remains the best option of treatment for patients with ULMCA disease, with lower TVR rates.
Push Attack: Binding Virtual and Real Identities Using Mobile Push Notifications

Popular mobile apps use push notifications extensively to offer an “always connected” experience to their users. Social networking apps use them as a real-time channel to notify users about new private messages or new social interactions (e.g., friendship request, tagging, etc.). Despite the cryptography used to protect these communication channels, the strict temporal binding between the actions that trigger the notifications and the reception of the notification messages in the mobile device may represent a privacy issue. In this work, we present the push notification attack designed to bind the physical owners of mobile devices with their virtual identities, even if pseudonyms are used. In an online attack, an active attacker triggers a push notification and captures the notification packets that transit in the network. In an offline attack, a passive attacker correlates the social network activity of a user with the received push notification. The push notification attack bypasses the standard ways of protecting user privacy based on the network layer by operating at the application level. It requires no additional software on the victim’s mobile device.
The effect of statin use on the incidence of prostate cancer: A population‐based nested case–control study

Preclinical studies suggest statins may help prevent prostate cancer (PC), but epidemiologic results are mixed. Many epidemiological studies have relatively short prediagnosis drug exposure data, which may miss some statin use. We completed a nested case–control study investigating the impact of statin use on PC diagnosis and clinically significant PC using data from men aged ≥40 years in the Canadian province of Saskatchewan between 1990 and 2010. Drug exposure histories were derived from a population‐based prescription drug database. We used conditional logistic regression to model use of statins as a class and stratified analyses for groups defined by lipophilicity. Clinically significant PC was defined as Gleason score 8–10 OR stage C or D or III or IV at diagnosis. 12,745 cases of PC were risk‐set matched on age and geographic location to 50,979 controls. Greater than 90% of subjects had prediagnosis drug exposure histories >15 years. 2,064 (16.2%) cases and 7,956 (15.6%) controls were dispensed one or more statin prescriptions. In multivariable models, ever prescription of statins was not associated with PC diagnosis (OR 0.97; 95% CI 0.90–1.05). Neither lipophilic statins (OR 0.96, 95% CI 0.88–1.04) nor hydrophilic statins (OR 1.06, 95% CI 0.95–1.20) impacted PC diagnosis. There was no effect of the dose or duration of statin use. Diagnosis of clinically significant PC decreased with statin use (OR 0.84, 95% CI 0.73–0.97). Statin use is not associated with overall PC risk, regardless of duration or dose of statin exposure. Statin use is associated with a decreased risk of clinically significant PC.
Studies on the Internal Ballistics of Composite Solid Rocket Propellants Incorporating Nano-Structured Catalysts

This paper deals with the analysis of burn rate using various catalysts of Iron Oxide and determining which gives the higher burn rate with low pressure variation. The Ammonium Perchlorate (AP) was obtained and ground into fine powder with the particle size ranging from 63 to 125 μm. The propellant strands were prepared with proportions by mixing AP with the binder (Hydroxyl Terminated Polybutadiene), the catalyst (Iron Oxide), curing agent (Isophorone diisocyanate) and the plasticizer (Dioctyladipate). The prepared propellant mixture was cured at around 63 deg C to get various propellant strands. The first strand was prepared with the absence of a catalyst to set an initial base of comparison with other Iron Oxide catalysts, namely, Flower Shaped, Micro and Nano, based on the size of the particles. The combustion process was carried out in a strand burner, which was in turn connected to a data acquisition system. The obtained output was analysed in the form of graphs. The burn rate was achieved by calculating the slope of the graph i.e . by calculating the difference between the highest and the lowest peak of the graph and dividing the total time by the answer. The experiment was repeated with the different catalyst types, as mentioned above, at different pressures. It was observed that the Nano shaped Iron Oxide exhibits better burning characteristics when compared to the rest with the pressure index of 0.792. In this paper, the various experiments carried out along with their procedures are explained in detail. The results obtained and the techniques used are also elaborately described in this paper.
Impacts of climate and land use on N2O and CH4 fluxes from tropical ecosystems in the Mt. Kilimanjaro region, Tanzania

In this study, we quantify the impacts of climate and land use on soil N2O and CH4 fluxes from tropical forest, agroforest, arable and savanna ecosystems in Africa. To do so, we measured greenhouse gases (GHG) fluxes from 12 different ecosystems along climate and land‐use gradients at Mt. Kilimanjaro, combining long‐term in situ chamber and laboratory soil core incubation techniques. Both methods showed similar patterns of GHG exchange. Although there were distinct differences from ecosystem to ecosystem, soils generally functioned as net sources and sinks for N2O and CH4 respectively. N2O emissions correlated positively with soil moisture and total soil nitrogen content. CH4 uptake rates correlated negatively with soil moisture and clay content and positively with SOC. Due to moderate soil moisture contents and the dominance of nitrification in soil N turnover, N2O emissions of tropical montane forests were generally low (<1.2 kg N ha−1 year−1), and it is likely that ecosystem N losses are driven instead by nitrate leaching (~10 kg N ha−1 year−1). Forest soils with well‐aerated litter layers were a significant sink for atmospheric CH4 (up to 4 kg C ha−1 year−1) regardless of low mean annual temperatures at higher elevations. Land‐use intensification significantly increased the soil N2O source strength and significantly decreased the soil CH4 sink. Compared to decreases in aboveground and belowground carbon stocks enhanced soil non‐CO2 GHG emissions following land‐use conversion from tropical forests to homegardens and coffee plantations were only a small factor in the total GHG budget. However, due to lower ecosystem carbon stock changes, enhanced N2O emissions significantly contributed to total GHG emissions following conversion of savanna into grassland and particularly maize. Overall, we found that the protection and sustainable management of aboveground and belowground carbon and nitrogen stocks of agroforestry and arable systems is most crucial for mitigating GHG emissions from land‐use change.
Autophagy Creates a CTL Epitope That Mimics Tumor-Associated Antigens

The detailed mechanisms responsible for processing tumor-associated antigens and presenting them to CTLs remain to be fully elucidated. In this study, we demonstrate a unique CTL epitope generated from the ubiquitous protein puromycin-sensitive aminopeptidase, which is presented via HLA-A24 on leukemic and pancreatic cancer cells but not on normal fibroblasts or EBV-transformed B lymphoblastoid cells. The generation of this epitope requires proteasomal digestion and transportation from the endoplasmic reticulum to the Golgi apparatus and is sensitive to chloroquine-induced inhibition of acidification inside the endosome/lysosome. Epitope liberation depends on constitutively active autophagy, as confirmed with immunocytochemistry for the autophagosome marker LC3 as well as RNA interference targeting two different autophagy-related genes. Therefore, ubiquitously expressed proteins may be sources of specific tumor-associated antigens when processed through a unique mechanism involving autophagy.
Subgingival prevalence rate of enteric rods in subjects with periodontal health and disease

Background: The prevalence of enteric rods and their association with chronic periodontitis has gained prominence recently. Although the prevalence of these organisms from the subgingival plaque sample was reported in the literature, the carriage rate of these rods in our population is lacking. The present study was undertaken to know the carriage rate of enteric rods from our population in patients with periodontal health and disease. Materials and Methods: Eighty-four systemically healthy participants, inclusive of 46 males and 38 females, were selected for the study. The selected participants were subjected to a periodontal examination and were categorized into chronic periodontitis and healthy group. Subgingival plaque samples were taken from all the participants, plated onto McConkey agar plates, and incubated overnight at 37°C to check for the growth of organisms. The grown organisms were then cultured according to the standard procedures. Results: Prevalence of 71% and 83% of enteric rods in subjects with periodontal health and disease, respectively, was found in our study which was not statistically significant. Conclusion: Although no significant differences exist in the prevalence of enteric rods between healthy and patients with chronic periodontitis, the prevalence rate of enteric rods in subgingival plaque samples is considerably high in our population.
Nonlinear phase‐separation behavior of poly(methyl methacrylate)/poly(styrene‐co‐maleic anhydride) blends

Thenonlinearphase-separationbehaviorofpoly(methylmethacrylate)/poly(styrene-co-maleicanhydride)(PMMA/SMA)blends overwideappropriatetemperatureandheatingraterangeswasstudiedusingtime-resolvedsmall-anglelaserlightscattering. During the non-isothermal process, a quantitative logarithm function was established to describe the relationship between cloud point (Tc) and heating rate (k) as given by Tc = Alnk + T0, in which the parameter A, reflecting the heating rate dependence, is much different for different compositions due to phase-separation rate and activation energy difference. For the isothermal phase-separation process, an Arrhenius-like equation was successfully applied to describe the temperature dependence of the apparent diffusion coefficient (Dapp) and the relaxation time (τ) of the early stage as well as the late stage of spinodal decomposition (SD) of PMMA/SMA blends. Based on the successful application of the Arrhenius-like equation, the relatedactivationenergiescouldbeobtainedfromDapp and τ oftheearlyandlatestagesofSD,respectively.Inaddition,these results indicate that it is possible to predict the temperature dependence of the phase-separation behavior of binary polymer mixtures during isothermal annealing over a range of 100 ◦ C above the glass transition temperature using the Arrhenius-like equation. c � 2012 Society of Chemical Industry
Experimental design of multifactor climate change experiments with elevated CO2, warming and drought: the CLIMAITE project

Recent findings indicate that the interactions among CO2, temperature and water can be substantial, and that the combined effects on the biological systems of several factors may not be predicted from experiments with one or a few factors. Therefore realistic multifactorial experiments involving a larger set of main factors are needed. We describe a new Danish climate change-related field scale experiment, CLIMAITE, in a heath/grassland ecosystem. CLIMAITE is a full factorial combination of elevated CO2, elevated temperature and prolonged summer drought. The manipulations are intended to mimic anticipated major environmental changes at the site by year 2075 as closely as possible. The impacts on ecosystem processes and functioning (at ecophysiological levels, through responses by individuals and communities to ecosystem-level responses) are investigated simultaneously. The increase of [CO2] closely corresponds with the scenarios for year 2075, while the warming treatment is at the lower end of the predictions and seems to be the most difficult treatment to increase without unwanted side effects on the other variables. The drought treatment follows predictions of increased frequency of drought periods in summer. The combination of the treatments does not create new unwanted side effects on the treatments relative to the treatments alone. (Less)
Effect of desiccating environmental stress versus systemic muscarinic AChR blockade on dry eye immunopathogenesis.

PURPOSE A majority of experimental data on dry eye disease (DED) immunopathogenesis have been derived from a murine model of DED that combines desiccating environmental stress with systemic muscarinic acetylcholine receptor (mAChR) inhibition. However, to our knowledge the effects of pharmacologic mAChR blockade on the pathogenesis of experimental DED have not been evaluated systemically. The purpose of our study was to investigate the differential effects of desiccating environmental stress and mAChR inhibition on the pathogenesis of DED. METHODS DED was induced in female C57BL/6 mice by exposure to a desiccating environment in the controlled-environment chamber or to systemic scopolamine, or by performing extraorbital lacrimal gland excision. Clinical disease was assessed using corneal fluorescein staining (CFS) and the cotton thread test (CTT). Corneal CD11b(+) and conjunctival CD3(+) T-cell infiltration were evaluated by flow cytometry. T-cells from draining cervical lymph nodes (CLN) and distant inguinal lymph nodes (ILN) were analyzed for Th1, Th2, Th17, and Treg responses by flow cytometry and ELISA. RESULTS Desiccating environmental stress and systemic mAChR blockade induced similar clinical signs of DED. However, desiccating environmental stress imparted higher conjunctival CD3(+) T-cell infiltration, and greater Th17-cell activity and Treg dysfunction than mAChR blockade, while mAChR blockade decreased tear secretion to a greater extent than desiccating environmental stress. Systemic mAChR blockade attenuated Th17 activity and enhanced Th2 and Treg responses without affecting Th1 activity. CONCLUSIONS In vivo inhibition of mAChRs variably affects CD4(+) T-cell subsets, and desiccating environmental stress and systemic mAChR blockade induce DED through different primary pathogenic mechanisms.
Identification of Novel QTLs for Isolate-Specific Partial Resistance to Plasmodiophora brassicae in Brassica rapa

Plasmodiophora brassicae, the causal agent of clubroot disease of the Brassica crops, is widespread in the world. Quantitative trait loci (QTLs) for partial resistance to 4 different isolates of P. brassicae (Pb2, Pb4, Pb7, and Pb10) were investigated using a BC1F1 population from a cross between two subspecies of Brassica rapa, i.e. Chinese cabbage inbred line C59-1 as a susceptible recurrent parent and turnip inbred line ECD04 as a resistant donor parent. The BC1F2 families were assessed for resistance under controlled conditions. A linkage map constructed with simple sequence repeats (SSR), unigene-derived microsatellite (UGMS) markers, and specific markers linked to published clubroot resistance (CR) genes of B. rapa was used to perform QTL mapping. A total of 6 QTLs residing in 5 CR QTL regions of the B. rapa chromosomes A01, A03, and A08 were identified to account for 12.2 to 35.2% of the phenotypic variance. Two QTL regions were found to be novel except for 3 QTLs in the respective regions of previously identified Crr1, Crr2, and Crr3. QTL mapping results indicated that 1 QTL region was common for partial resistance to the 2 isolates of Pb2 and Pb7, whereas the others were specific for each isolate. Additionally, synteny analysis between B. rapa and Arabidopsis thaliana revealed that all CR QTL regions were aligned to a single conserved crucifer blocks (U, F, and R) on 3 Arabidopsis chromosomes where 2 CR QTLs were detected in A. thaliana. These results suggest that some common ancestral genomic regions were involved in the evolution of CR genes in B. rapa.
Characteristics Of Performance-Optimal Multi-level Cache Hierarchies

The increasing speed of new generation processors will exacerbate the already large difference between CPU cycle times and main memory access times. As this difference. grows, it will be increasingly difficult to build single-level caches that are both fast enough to match these fast cycle times and large enough to effectively hide the slow main memory access times. One solution to this problem is to use a multi-level cache hierarchy. This paper examines the relationship between cache organization and program execution time for multi-level caches. We show that a first-level cache dramatically reduces the number of references seen by a second-level cache, without having a large effect on the number of second-level cache misses. This reduction in the number of second-level cache hits changes the optimal design point by decreasing the importance of the cycle-time of the second-level cache relative to its size. The lower the first-level cache miss rate, the less important the second- level cycle time becomes. This change in relative importance of cycle time and miss rate makes associativity more attractive and increases the optimal cache size for second-level caches over what they would be for an equivalent single-level cache system.