Miracle-dz/UniFAR-FTUs huggingface dataset:
Acute Disruption of Cytochrome Oxidase Activity in Brain in a Perinatal Rat Stroke Model

ABSTRACT: Cytochrome oxidase histochemistry in frozen brain sections provides an estimate of mitochondrial respiratory function and neuronal metabolic activity. We hypothesized that in a perinatal rodent stroke model acute selective disruption of cytochrome oxidase activity could identify neuronal populations susceptible to irreversible ischemic injury. In 7-d-old rats, focal ischemic injury was induced by right carotid ligation followed by 8% O2 exposure (2.75 h); this procedure elicits ipsilateral forebrain injury with prominent hippocampal lesions, often including dentate gyrus. Cytochrome oxidase activity was quantitated by densitom-etry in brain sections prepared from animals killed 1 h (n = 8), 24 h (n = 11), or 5 d (n = 3) posthypoxia. At 1 h posthypoxia, in six of eight there was diffuse ipsilateral suppression of cytochrome oxidase activity (p = 0.0001, two-way analysis of variance, compared with values in contralateral hemisphere), which was most marked in periventricular regions including dentate gyrus (−29%), medial habenula (−38%), and posterolateral thalamic nucleus (−42%). Nissl staining of adjacent sections was completely intact in four of eight, and four of eight had subtle focal reductions in staining. At 24 h and 5 d posthypoxia, heterogeneous suppression of cytochrome oxidase activity persisted in the lesioned hemisphere, with close anatomic correspondence between loss of cytochrome oxidase activity and loss of Nissl staining. Additional studies indicated that the threshold duration of 8% O2 exposure (after carotid ligation) for suppression of cytochrome oxidase activity was 1–2 h. Disruption of cytochrome oxidase activity represents one of the earliest detectable indicators of neuronal injury in this perinatal stroke model. The threshold duration of hypoxia to suppress its activity preceded or coincided with that to elicit injury, and the prominent loss of activity in dentate gyrus paralleled its enhanced susceptibility to ischemic injury at this developmental stage.
Sauropod dinosaurs evolved moderately sized genomes unrelated to body size

Sauropodomorph dinosaurs include the largest land animals to have ever lived, some reaching up to 10 times the mass of an African elephant. Despite their status defining the upper range for body size in land animals, it remains unknown whether sauropodomorphs evolved larger-sized genomes than non-avian theropods, their sister taxon, or whether a relationship exists between genome size and body size in dinosaurs, two questions critical for understanding broad patterns of genome evolution in dinosaurs. Here we report inferences of genome size for 10 sauropodomorph taxa. The estimates are derived from a Bayesian phylogenetic generalized least squares approach that generates posterior distributions of regression models relating genome size to osteocyte lacunae volume in extant tetrapods. We estimate that the average genome size of sauropodomorphs was 2.02 pg (range of species means: 1.77–2.21 pg), a value in the upper range of extant birds (mean = 1.42 pg, range: 0.97–2.16 pg) and near the average for extant non-avian reptiles (mean = 2.24 pg, range: 1.05–5.44 pg). The results suggest that the variation in size and architecture of genomes in extinct dinosaurs was lower than the variation found in mammals. A substantial difference in genome size separates the two major clades within dinosaurs, Ornithischia (large genomes) and Saurischia (moderate to small genomes). We find no relationship between body size and estimated genome size in extinct dinosaurs, which suggests that neutral forces did not dominate the evolution of genome size in this group.
Suicide Note Themes and Suicide Prevention

Objective: The aim was to determine if suicide note themes might inform suicide prevention strategies. Method: The themes of 42 suicide notes from the Northern Ireland Suicide Study (major psychological autopsy study) were examined. Results: The commonest themes were “apology/shame” (74%), “love for those left behind” (60%), “life too much to bear” (48%), “instructions regarding practical affairs post-mortem” (36%), “hopelessness/nothing to live for” (21%) and “advice for those left behind” (21%). Notes of suicides with major unipolar depression were more likely than notes of suicides without major unipolar depression to contain the themes “instructions regarding practical affairs post-mortem” (67% versus 19%, p = 0.005) and “hopelessness/nothing to live for” (40% versus 11%, p = 0.049). Notes of suicides with a previous history of deliberate self-harm were less likely than notes of suicides without a history of deliberate self-harm to contain the theme “apology/shame” (58% versus 87%, p = 0.04). Notes of elderly suicides were more likely than non-elderly notes to contain the theme “burden to others” (40% versus 3%, p = 0.03). Conclusions: The fact that three quarters of suicide notes contained the theme “apology/shame” suggests that the deceased may have welcomed alternative solutions for their predicaments. Scrutiny of suicide note themes in the light of previous research findings suggests that cognitive therapy techniques, especially problem solving, may have an important role to play in suicide prevention and that potential major unipolar depressive (possibly less impulsive) suicides, in particular, may provide fertile ground for therapeutic intervention (physical and psychological). Ideally all primary care doctors and mental health professionals working with (potentially) suicidal people should be familiar with basic cognitive therapy techniques, especially problem solving skills training.
In Vitro Effects of Polyamines on Polymorphonuclear Cell Apoptosis and Implications in the Pathogenesis of Periodontal Disease

Apoptosis provides a mechanism for clearance of unwanted cells in a variety of situations in which programmed or physiological cell death occurs; but the premature death of defensive cells could promote infection, inflammation and concomitant diseases. Polymorphonuclear cells (PMN) of gingival sulcus play an important role in host defense against periodontal tissue‐invading bacteria, but their phagocytic activity is conditioned by several virulence factors released by oral pathogens. Polyamines derived from oral bacteria frequently occur at concentrations approaching 1 mM in gingival fluid at diseased periodontal sites. Brief exposure of PMN to polyamines shortened the lag culture time required to observe microscopical or DNA fragmentation traces. Increase of Fas/Apo‐1 expression and caspase‐8 and caspase‐3 activation focused two typical steps in the pathway of the pro‐apoptotic mechanism exhibited by polyamines, even if to a different extent: spermine > spermidine > putrescine. The possible role played by polyamines in the pathogenesis of periodontal disease by dysregulating apoptosis of gingival PMN is discussed.
Experimental assessment of toxic phytochemicals in Jatropha curcas: oil, cake, bio-diesel and glycerol.

BACKGROUND Jatropha curcas seed is a rich source of oil; however, it can not be utilised for nutritional purposes due to presence of toxic and anti-nutritive compounds. The main objective of the present study was to quantify the toxic phytochemicals present in Indian J. curcas (oil, cake, bio-diesel and glycerol). RESULTS The amount of phorbol esters is greater in solvent extracted oil (2.8 g kg⁻¹) than in expeller oil (2.1 g kg⁻¹). Liquid chromatography-mass spectroscopy analysis of the purified compound from an active extract of oil confirmed the presence of phorbol esters. Similarly, the phorbol esters content is greater in solvent extracted cake (1.1 g kg⁻¹) than in cake after being expelled (0.8 g kg⁻¹). The phytate and trypsin inhibitory activity of the cake was found to be 98 g kg⁻¹ and 8347 TIU g⁻¹ of cake, respectively. Identification of curcin was achieved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and the concentration of curcin was 0.95 g L⁻¹ of crude concentrate obtained from cake. CONCLUSION Higher amounts of phorbol esters are present in oil than cake but bio-diesel and glycerol are free of phorbol esters. The other anti-nutritional components such as trypsin inhibitors, phytates and curcin are present in cake, so the cake should be detoxified before being used for animal feed.
Human Umbilical Mesenchymal Stem Cells Attenuate the Progression of Focal Segmental Glomerulosclerosis

Abstract:Previous studies have suggested the potential of mesenchymal stem cells (MSCs) to repair damaged kidney diseases. However, the effect of human umbilical cord MSCs (HuMSCs) on the progression of focal segmental glomerulosclerosis (FSGS) remains poorly understood. Adriamycin-induced nephropathy is a rodent model of chronic kidney disease that has been studied extensively and has enabled a greater understanding of the processes underlying the progression of FSGS. This study aimed to investigate the role of HuMSCs on the progression of kidney disease using a model of adriamycin-induced nephropathy. Human MSCs were labeled with 5-bromo-2′-deoxyuridine to track their localization to the kidneys after infusion. Clinical parameters and histology suggested amelioration of FSGS in MSC-treated animals at 12 weeks, especially in those that received repeated doses. These results were associated with reduced serum interleukin (IL)-6 and tumor necrosis factor-&agr;, transforming growth factor-&bgr; levels, connective tissue growth factor messenger RNA expression and upregulated serum IL-10 levels. In short, this experiment found that HuMSCs improved kidney fibrosis and modulated the inflammatory response, suggesting that xenogenic transplantation of HuMSCs is a novel approach for improving the progression of FSGS and may be a promising therapeutic intervention in the future.
A method of measuring friction surface temperature of the rotating rotor

The purpose of this research is to develop methods of measuring the temperature of the friction surface high-speed rotor at the tribological investigations. This research is of current importance due to the wide demand for such systems in investigations and diagnostics of thermal state of friction units of machines and aggregates. The object of study is the friction surface of the rotor, which is part of the experimental stand for research of the tribological characteristics and the process of heat transfer between gas and surfaces forming a sickle-shaped gap of the sliding bearing of the turbounit. This article suggest technique of temperature measurement based on the use of autonomous measuring unit and thermocouples installed in the rotor as close as possible to the friction surface. Transmission of measurement data produced by the infrared channel to a PC. Temperature measurement is performed at four points with a resolution of 0.25 0C and the error not more than ± 0,6 0C. To assess the accuracy of the developed system of temperature measurement used a thermal imager FLIR E60 and portable temperature meter ITP-1. As a result the unique method for measuring the temperature of the friction surfaces of the rotating rotor of the test bed is developed. The proposed method can be used to determine with high precision the magnitude of the heat transfer coefficient in experimental studies of heat transfer processes in bearing units of sliding friction.
Aerobic Training Restores Arterial Baroreflex Sensitivity in Older Adults With Type 2 Diabetes, Hypertension, and Hypercholesterolemia

Objective: Lowered baroreflex sensitivity (BRS) predicts mortality and occurs with increasing age and diabetes. We examined whether aerobic exercise could restore arterial BRS in adults at high cardiovascular risk (diabetes, geriatric age group, hypercholesterolemia, and hypertension). Design: Randomized, controlled, single-blind study. Setting: VITALiTY (Vancouver Initiative to Add Life to Years) Research Laboratory. Participants: Thirty-nine older adults (mean age, 71.5 ± 0.7 years) with diet-controlled or oral hypoglycemic-controlled type 2 diabetes, hypertension, and hypercholesterolemia. Interventions: Subjects were recruited to each of 2 groups: an aerobic group (3 months of vigorous aerobic exercise as defined by 80% to 85% of maximal heart rate), and a nonaerobic (no aerobic exercise) group. Exercise sessions were supervised by a certified exercise trainer 3 times per week. Main Outcome Measures: Baroreflex function was assessed using the spontaneous baroreflex method. Main outcome measures included BRS, BRSup, BRSdown, and &OV0312;o2max. Results: The aerobic group demonstrated an increase in BRS that was not demonstrated in the nonaerobic group (+60.9 ± 23.5 vs +2.2 ± 7.9%; P = 0.010). Conclusions: Our findings indicate that a relatively short aerobic exercise intervention can reverse functional impairments of the arterial baroreflex function in older adults at high cardiovascular risk.
Core stability measures as risk factors for lower extremity injury in athletes.

INTRODUCTION/PURPOSE Decreased lumbo-pelvic (or core) stability has been suggested to contribute to the etiology of lower extremity injuries, particularly in females. This prospective study compares core stability measures between genders and between athletes who reported an injury during their season versus those who did not. Finally, we looked for one or a combination of these strength measures that could be used to identify athletes at risk for lower extremity injury. METHODS Before their season, 80 female (mean age = 19.1 +/- 1.37 yr, mean weight 65.1 +/- 10.0 kg) and 60 male (mean age = 19.0 +/- 0.90 yr, mean weight 78.8 +/- 13.3 kg) intercollegiate basketball and track athletes were studied. Hip abduction and external rotation strength, abdominal muscle function, and back extensor and quadratus lumborum endurance was tested for each athlete. RESULTS Males produced greater hip abduction (males = 32.6 +/- 7.3%BW, females = 29.2 +/- 6.1%BW), hip external rotation (males = 21.6 +/- 4.3%BW, females = 18.4 +/- 4.1%BW), and quadratus lumborum measures (males = 84.3 +/- 32.5 s, females = 58.9 +/- 26.0 s). Athletes who did not sustain an injury were significantly stronger in hip abduction (males = 31.6 +/- 7.1%BW, females = 28.6 +/- 5.5%BW) and external rotation (males = 20.6 +/- 4.2%BW, females = 17.9 +/- 4.4%BW). Logistic regression analysis revealed that hip external rotation strength was the only useful predictor of injury status (OR = 0.86, 95% CI = 0.77, 0.097). CONCLUSION Core stability has an important role in injury prevention. Future study may reveal that differences in postural stability partially explain the gender bias among female athletes.
Electrical power lines and childhood leukemia: A study from Greece

Residential proximity to electrical power lines of different voltage in relation to childhood leukemia was investigated through a case‐control study undertaken in Greece during 1993–1994. The study comprised 117 incident cases of childhood leukemia and 202 age‐, gender‐ and place‐of‐residence‐matched controls. Four measures of exposure to magnetic fields were developed, using data provided by the Public Power Corporation of Greece: Voltage (V) divided by the distance (d), V/d2, V/d3 and an adaptation of the Wertheimer‐Leeper code. Conditional‐logistic‐regression modeling was used to adjust for potential confounding influences of 18 variables. No significant trends of childhood leukemia risk with increasing exposure levels were noted, nor were there statistically significant elevations of disease risk at the higher exposure levels in each measure of exposure. These results do not support a causal link between residential proximity to electrical high‐voltage wires and childhood leukemia risk, but in themselves do not refute a weak empirical association. Int. J. Cancer 73:345–348, 1997. © 1997 Wiley‐Liss, Inc.
The association of fatigue with depression and insomnia in HIV-seropositive patients: a pilot study.

OBJECTIVE Fatigue is a pervasive symptom associated with HIV, resulting in significant functioning impairment; but little is known about its etiology or treatment. In patients with primary insomnia, data have shown improvement in fatigue following successful treatment of insomnia. However, little is known about the role of insomnia in patients with fatigue in HIV. This manuscript seeks to test the hypothesis that insomnia severity is correlated with increased fatigue in HIV-seropositive patients. METHODS Fifty-seven ambulatory HIV-seropositive patients, aged 18-60 years, with a DSM-IV-TR diagnosis of insomnia, were administered the Insomnia Severity Index (ISI), Piper Fatigue Scale (PFS), Hospital Anxiety and Depression scale, and Hamilton Depression Rating Scale (HAM-D). Their most recent CD4 count and time since diagnosis of HIV were recorded. Regression analysis was carried out with PFS as the dependent variable. RESULTS A higher ISI score correlated with higher PFS score, (R2 = 0.1713, P = 0.0042). Overall depression severity was not significantly correlated with PFS score, except in the most severely depressed subgroup, in which the HADS depression score was the strongest predictor of PFS (R2 = 0.182, P = 0.0009). In participants without depression, ISI accounted for most of the variance in fatigue (R2 = 0.6035, P = 0.0011). CONCLUSIONS Greater insomnia severity is associated with greater fatigue severity in HIV seropositive patients. Depression may contribute to both fatigue and insomnia. In the absence of depression, the treatment of insomnia may emerge as a treatment strategy to help alleviate fatigue. Further studies are needed to confirm these data. CLINICAL TRIAL INFORMATION Clinical Trials.Gov: The Treatment of Insomnia in Patients with HIV Disease. Registry Number: NCT00465972. URL: http://www.clinicaltrials. gov/ct2/show/NCT00465972? term = HIV+insomnia&rank = 1.
UVCB substances: Methodology for structural description and application to fate and hazard assessment

Substances of unknown or variable composition, complex reaction products, or biological materials (UVCBs) have been conventionally described in generic terms. Commonly used substance identifiers are generic names of chemical classes, generic structural formulas, reaction steps, physical–chemical properties, or spectral data. Lack of well‐defined structural information has significantly restricted in silico fate and hazard assessment of UVCB substances. A methodology for the structural description of UVCB substances has been developed that allows use of known identifiers for coding, generation, and selection of representative constituents. The developed formats, Generic Simplified Molecular‐Input Line‐Entry System (G SMILES) and Generic Graph (G Graph), address the need to code, generate, and select representative UVCB constituents; G SMILES is a SMILES‐based single line notation coding fixed and variable structural features of UVCBs, whereas G Graph is based on a workflow paradigm that allows generation of constituents coded in G SMILES and end point–specific or nonspecific selection of representative constituents. Structural description of UVCB substances as afforded by the developed methodology is essential for in silico fate and hazard assessment. Data gap filling approaches such as read‐across, trend analysis, or quantitative structure–activity relationship modeling can be applied to the generated constituents, and the results can be used to assess the substance as a whole. The methodology also advances the application of category‐based data gap filling approaches to UVCB substances. Environ Toxicol Chem 2015;34:2450–2462. © 2015 SETAC
Responsiveness of quantitative cartilage measures over one year in knee osteoarthritis: Comparison of radiography and MRI assessments

To directly compare the responsiveness of quantitative imaging measures of disease progression in knee osteoarthritis (OA). In the medial compartment of the knee comparison was made between: 1) radiographic joint space narrowing (JSN); 2) global quantitative magnetic resonance imaging (qMRI) of cartilage volume; 3) regional qMRI of cartilage thickness; and 4) regional analysis using an ordered value (OV) methodology.
Adrenomedullin 2/Intermedin Regulates HLA-G in Human Trophoblasts1

ABSTRACT Adrenomedullin 2 (ADM2), also referred to as intermedin (IMD), is expressed in trophoblast cells in human placenta and enhances the invasion and migration of first-trimester HTR-8SV/neo cells. Further infusion of ADM2 antagonist in pregnant rat causes fetoplacental growth restriction, suggesting a role for ADM2 in maintaining a successful pregnancy. This study was undertaken to assess whether ADM2 protein is present in decidual tissue and colocalized with HLA-G-positive cytotrophoblast cells and natural killer cells; to assess whether ADM2 regulates expression of HLA-G in trophoblast cells; and to identify whether mitogen-activated protein kinase (MAPK) signaling pathway is involved in ADM2-induced trophoblast cell invasion and migration. Using immunohistochemical methods and RT-PCR, this study shows that ADM2 protein is colocalized with HLA-G-expressing cytotrophoblast cells as well as with NCAM1 (CD56) immunoreactivity in human first-trimester decidual tissue, and that ADM2 mRNA is expressed in peripheral blood natural killer cells. Further, ADM2 dose dependently increases the expression of HLA-G antigen in HTR-8SV/neo cells as well as in term placental villi explants, suggesting involvement of ADM2 in the regulation of HLA-G in trophoblast cells. In addition, interference with the activity of RAF and MAPK3/1 by their inhibitors, manumycin and U0126, respectively, reduces ADM2-induced HTR-8SV/neo cell invasion and migration. In summary, this study suggests a potential involvement for ADM2 in regulating HLA-G antigen at the maternal-fetal interface in human pregnancy and facilitating trophoblast invasion and migration via MAPK3/1 phosphorylation.
Bortezomib (VELCADE) in metastatic breast cancer: pharmacodynamics, biological effects, and prediction of clinical benefits.

BACKGROUND Bortezomib (VELCADE) is a potent inhibitor of the 26S proteasome with broad antitumor activity. We performed a phase II study of bortezomib to evaluate its clinical effects in patients with metastatic breast cancer. PATIENTS AND METHODS Twelve patients with metastatic breast cancer were treated with bortezomib (VELCADE) at a dosage of 1.5 mg/m(2) administered biweekly for 2 weeks with 1 week of rest in a 21-day cycle. The primary objective was clinical response rate. Toxicity and pharmacodynamics data were also obtained. RESULTS No objective responses were observed. One patient had stable disease, and 11 others experienced disease progression. The median survival time was 4.3 months (range, 0.9-37 months). The most common grade 3 or 4 toxicities included fatigue (58%; n = 7) and skin rash (33%; n = 4). The mean inhibition of specific chymotryptic activity was 53.1% (+/- 13.33%). A statistically significant reduction in the plasma interleukin-6 level was seen (P = 0.0354). CONCLUSION Bortezomib was well tolerated but showed limited clinical activity against metastatic breast cancer when used as a single agent. The future development of this agent for the treatment of breast cancer should be guided by in vivo models that optimize activity in combination with other antitumor agents.