Miracle-dz/UniFAR-FTUs huggingface dataset:
Depressive Symptoms and Cigarette Smoking Among Teens

Context. Although several risk factors for tobacco use have been implicated in the development of depression, smoking progression has typically been viewed as a consequence of depression. The results of limited longitudinal studies are controversial. Objective. To assess the nature and direction of the relationship between cigarette smoking and depression among teens. Design. Prospective analysis of baseline and 1-year follow-up data from the National Longitudinal Study of Adolescent Health. Setting. In-home teen and parent interviews. Participants. Two samples were identified. For the first sample, 8704 adolescents who were not depressed at baseline based on CES-D scores were identified for analyses of the effects of cigarette smoking on development of high depressive symptomatology. Baseline smoking status, which could vary in this group, was the predictor of interest in these analyses. For the second sample, 6947 teens who had not smoked cigarettes in the 30 days before the baseline survey (noncurrent smokers) were identified for analyses on the effect of high depressive symptoms on subsequent moderate to heavy cigarette use at 1 year of follow-up. Baseline high depressive symptomatology based on CES-D score was the predictor of interest in this sample. Main Outcome Measures. Among the nondepressed, developing high depressive symptoms at 1 year of follow-up. Among noncurrent smokers, smoking at least 1 pack per week at 1 year of follow-up. Results. For the nondepressed, multivariate modeling revealed that current cigarette smoking was the strongest predictor of developing high depressive symptoms in all models (final model odds ratio [OR]: 3.90; 95% confidence interval [CI]: 1.85,8.20). For noncurrent smokers, although in bivariate analyses, baseline high depressive symptoms increased the risk of heavy smoking nearly threefold, multivariate modeling revealed that baseline high depressive symptoms were not predictive of heavy smoking when controlling for other determinants of smoking in teens. Previous experimentation with smoking was the strongest predictor of becoming a heavy smoker (OR: 3.04; 95% CI: 1.93,4.88). Conclusions. In contrast to common dictum, depression does not seem to be an antecedent to heavy cigarette use among teens. However, current cigarette use is a powerful determinant of developing high depressive symptoms.
Volume scanning in the evaluation of fetal malformations: a new dimension in prenatal diagnosis

Three‐dimensional ultrasound examination was performed in 204 patients with a fetal malformation detected by conventional ultrasound. The patients were examined between 13 and 40 weeks of gestation. The ultrasound equipment used was a Combison 330 and a Combison 530 (Kretztechnik, Austria) with an abdominal Voluson sector transducer (3.5/5 MHz) (Kretztechnik, Austria). This ultrasound system can provide a high‐quality three‐dimensional surface or translucency image of fetal structures similar to that of a photograph or an X‐ray image within seconds without an additional expensive work‐station.
Critical State-Based Filtering System for Securing SCADA Network Protocols

The security of System Control and Data Acquisition (SCADA) systems is one of the most pressing subjects in industrial systems, particularly for those installations actively using the public network in order to provide new features and services. In this paper, we present an innovative approach to the design of filtering systems based on the state analysis of the system being monitored. The aim is to detect attacks composed of a set of “SCADA” commands that, while licit when considered in isolation on a single-packet basis, can disrupt the correct behavior of the system when executed in particular operating states. The proposed firewall detects these complex attacks thanks to an internal representation of the controlled SCADA system. Furthermore, we detail the design of the architecture of the firewall for systems that use the ModBus and DNP3 protocols, and the implementation of a prototype, providing experimental comparative results that confirm the validity of the proposed approach.
Multiple sclerosis (MS) for the urologist: What should urologists know about MS?

Multiple sclerosis (MS) is a unique central nervous system (CNS) inflammatory disease with a broad spectrum of clinical presentations, which are time‐ and disease progression‐related. It usually affects young adults, with a female predominance of 3:1. Men are more likely to develop symptoms at a slightly older age with a more progressive disease course. Diagnosis relies on a combination of clinical, radiological, and laboratory investigations, with a central role of magnetic resonance imaging (MRI). Although the exact etiology is still obscure, the leading hypothesis behind MS relapses is acute inflammatory attacks on CNS myelin and axons. This complex process involves B and T cells together with macrophages and microglia. Genetic and environmental factors are thought to be major contributors to the disease's evolution. MS therapies consist of long‐term (immunomodulatory) management, focusing on disease modification, and short‐term symptomatic control. Symptomatic treatment includes pharmacological and non‐pharmacological methods to protect function and restore quality of life (QoL). The introduction and development of disease‐modifying medications provide opportunities to change the face of this disease, enhancing QoL over the long‐term. Interferon (INF) and Glatiramer acetate (GLAT) represent first line medications with limited effect and relatively fair safety profile. Newer medications with improved efficacy along with a more hazardous side effect profile are now considered second line therapy.
Convulsant Activity of Nonanesthetic Gas Combinations

Most nonanesthetics (inhaled compounds that neither cause anesthesia when given alone nor decrease the partial pressure of a known inhaled anesthetic required to produce anesthesia) and transitional compounds (inhaled compounds that are less potent than would be predicted by the Meyer-Overton hypothesis) cause convulsions. A possible exception is the perfluoroalkane series of nonanesthetics. The present study tested whether perfluoroalkanes do provide an exception. Further, we tested whether the convulsant effects of nonanesthetic and transitional compounds were additive. The nonanesthetic perfluoropropane caused convulsions at 7.5 +/- 0.7 atm (mean +/- SD). Convulsions also were produced by perfluorocyclobutane (0.976 +/- 0.002 atm), 1,2-dichlorotetrafluoroethane (0.358 +/- 0.011 atm), 2,3-dichlorooctafluorobutane (0.085 +/- 0.007 atm), 1,2-dichlorohexafluorocyclobutane (0.055 +/- 0.007 atm), and flurothyl (0.00156 +/- 0.00039 atm). Of these, 1,2-dichlorotetrafluoroethane is a transitional compound, the remainder being nonanesthetics. The combination of flurothyl plus 1,2-dichlorohexafluorocyclobutane gave evidence of antagonism (a 17% +/- 21% deviation from additivity; P < 0.05), whereas the combination of 1,2-dichlorotetrafluoroethane plus 2,3-dichlorooctafluorobutane gave evidence of synergy (a -13% +/- 8% deviation from additivity; P < 0.05). The combinations of perfluoropropane plus perfluorocyclobutane (-4% +/- 15%), and perfluoropropane plus 1,2-dichlorohexafluorocyclobutane (-1% +/- 26%) did not produce results that deviated significantly from additivity. We conclude that pairs of these compounds either produce convulsions in an additive manner, a finding consistent with (but not proving) a common mode of action; or deviate modestly from additivity, a finding suggesting that at least a portion of the mechanistic basis for convulsions might differ, particularly for flurothyl plus other nonanesthetics, or for the combination of nonanesthetics and transitional compounds. (Anesth Analg 1997;84:634-40)
Living‐donor liver transplantation for carbamoyl phosphate synthetase 1 deficiency

Kasahara M, Sakamoto S, Shigeta T, Fukuda A, Kosaki R, Nakazawa A, Uemoto S, Noda M, Naiki Y, Horikawa R. Living‐donor liver transplantation for carbamoyl phosphate synthetase 1 deficiency. Pediatr Transplantation 2010: 14:1036–1040. © 2010 John Wiley & Sons A/S.
Control of re-entrant activity in a model of mammalian atrial tissue

We evaluate the feasibility of using resonant drift under feedback driven stimulation to control re-entrant excitation in atrial muscle. We simulate a two-dimensional sheet of atrial tissue, where the local kinetics are described by the Earm-Hilgemann-Noble equations for a rabbit atrial cell, and the effects of small amplitude spatially uniform forcing of the whole sheet are computed. Repetitive forcing can induce a drift of a spiral wave in the two-dimensional model, with a drift velocity of up to 10 cm s-1. For a 4 cm x 4 cm atrial surface this resonant drift can move the re-entrant spiral to the inexcitable boundaries, eliminating re-entry in less than 10 s when the amplitude of the repetitive stimulation is 10% that of the single shock defibrillation threshold.
Disparate rates of acute rejection and donor‐specific antibodies among high‐immunologic risk renal transplant subgroups receiving antithymocyte globulin induction

Lymphocyte‐depleting induction lowers acute rejection (AR) rates among high‐immunologic risk (HIR) renal transplant recipients, including African Americans (AAs), retransplants, and the sensitized. It is unclear whether different HIR subgroups experience similarly low rates of AR. We aimed to describe the incidence of AR and de novo donor‐specific antibody (dnDSA) among HIR recipients categorized by age, race, or donor type. All received antithymocyte globulin (ATG) induction and triple maintenance immunosuppression. A total of 464 HIR recipients from 2007 to 2014 were reviewed. AR and dnDSA rates at 1 year for the entire population were 14% and 27%, respectively. AR ranged from 6.7% among living donor (LD) recipients to 30% in younger AA deceased donor (DD) recipients. De novo donor‐specific antibody at 1 year ranged from 7% in older non‐AA LD recipients to 32% in AAs. AA race remained as an independent risk factor for AR among DD recipients and for dnDSA among all HIR recipients. Development of both AR and dnDSA within the first year was associated with a 54% graft survival at 5 years and was an independent risk factor for graft loss. Despite utilization of recommended immunosuppression for HIR recipients, substantial disparities exist among subgroups, warranting further consideration of individualized immunosuppression in certain HIR subgroups.
Neural bases of song preferences in female zebra finches (Taeniopygia guttata)

WE examined the neural bases of song preferences in female zebra finches Taeniopygia guttat a). Females performed more courtship displays in response to conspecific songs than to heterospecific songs. Following electrolytic lesion to the HVc (sometimes referred to as high vocal center), females maintained normal song preferences. However, following lesion to cHV (caudal hyperstriatum ventrale, an auditory area) females performed courtship displays at high rates in response to both conspecific and heterospecific song. Thus cHV, but not HVc, must be intact for female zebra finches to exhibit normal song preferences. Differences between this study and those showing HVc lesions disrupting song preferences in female canaries Serinus canari a indicate interspecific variation in the function of HVc in female songbirds.
Percolation and isoperimetry on roughly transitive graphs

In this paper we study percolation on a roughly transitive graph G with polynomial growth and isoperimetric dimension larger than one. For these graphs we are able to prove that p_c < 1, or in other words, that there exists a percolation phase. The main results of the article work for both dependent and independent percolation processes, since they are based on a quite robust renormalization technique. When G is transitive, the fact that p_c < 1 was already known before. But even in that case our proof yields some new results and it is entirely probabilistic, not involving the use of Gromov's theorem on groups of polynomial growth. We finish the paper giving some examples of dependent percolation for which our results apply.
Temporal variability in shell mound formation at Albatross Bay, northern Australia

We report the results of 212 radiocarbon determinations from the archaeological excavation of 70 shell mound deposits in the Wathayn region of Albatross Bay, Australia. This is an intensive study of a closely co-located group of mounds within a geographically restricted area in a wider region where many more shell mounds have been reported. Valves from the bivalve Tegillarca granosa (Linnaeus, 1758) were dated. The dates obtained are used to calculate rates of accumulation for the shell mound deposits. These demonstrate highly variable rates of accumulation both within and between mounds. We assess these results in relation to likely mechanisms of shell deposition and show that rates of deposition are affected by time-dependent processes both during the accumulation of shell deposits and during their subsequent deformation. This complicates the interpretation of the rates at which shell mound deposits appear to have accumulated. At Wathayn, there is little temporal or spatial consistency in the rates at which mounds accumulated. Comparisons between the Wathayn results and those obtained from shell deposits elsewhere, both in the wider Albatross Bay region and worldwide, suggest the need for caution when deriving behavioural inferences from shell mound deposition rates, and the need for more comprehensive sampling of individual mounds and groups of mounds.
Enhancement of Phototransduction G Protein-Effector Interactions by Phosphoinositides*

Light responses in photoreceptor cells are mediated by the action of the G protein transducin (Gt) on the effector enzyme cGMP phosphodiesterase (PDE6) at the surface of disk membranes. The enzymatic components needed for phosphoinositide-based signaling are known to be present in rod cells, but it has remained uncertain what role phosphoinositides play in vertebrate phototransduction. Reconstitution of PDE6 and activated Gαt, on the surface of large unilamellar vesicles containing d-myo-phosphatidylinositol-4,5-bisphosphate (PI(4,5)P2), stimulated PDE activity nearly 4-fold above the level observed with membranes containing no phosphoinositides, whereas G protein-independent activation by trypsin was unaffected by the presence of phosphoinositides. PDE activity was similarly stimulated by d-myo-phosphatidylinositol-3,4-bisphosphate and d-myo-phosphatidylinositol-4-phosphate (PI(4)P), but much less by d-myo-phosphatidylinositol-5-phosphate (PI(5)P) or d-myo-phosphatidylinositol-3,5-bisphosphate. Incubation of rod outer segment membranes with phosphoinositide-specific phospholipase C decreased G protein-stimulated activation of endogenous PDE6, but not trypsin-stimulated PDE activity. Binding experiments using phosphoinositide-containing vesicles revealed patterns of PDE6 binding and PDE6-enhanced Gαt-GTPγS binding, consistent with the activation profile PI(4,5)P2 > PI(4)P > PI(5)P ∼ control vesicles. These results suggest that enhancement of effector-G protein interactions represents a possible mechanism for modulation of phototransduction gain by changes in phosphoinositide levels, perhaps occurring in response to longterm changes in illumination or other environmental cues.
Methylenetetrahydrofolate reductase C677T and A1298C polymorphisms and susceptibility to gastric adenocarcinoma in an Italian population

Abstract Methylenetetrahydrofolate reductase (MTHFR) plays a central role in the metabolism of folate, which provides a methyl donor for DNA methylation and deoxynucleoside synthesis. We performed a case–control study to explore the relationship between two common MTHFR polymorphisms (C677T and A1298C), their combination and interaction with environmental exposures, on gastric adenocarcinoma susceptibility and progression in an Italian population. One hundred and two cases and 254 hospital controls, matched by age and gender, were enrolled. Individuals carrying the MTHFR 677T allele showed an increased risk of gastric cancer (odds ratio (OR) 1.62, 95% confidence interval (CI) 0.98–2.67), particularly among ever smokers (OR 2.10, 95% CI 1.07–5.33) and, among 677 TT individuals, those with a low intake of fruit and vegetables (OR 2.18, 95% CI 1.05–4.54). The strongest effect, however, was noted for the MTHFR 677 TT genotype among the diffuse gastric cancer histotype (OR 2.92, 95% CI 1.12–7.60). No association was detected for the effect of MTHFR A1298C polymorphism. Survival analysis did not show any association between each polymorphism on the overall survival, although when the analysis was restricted to the first year of follow-up after the surgical intervention an improved survival was noted among MTHFR 677 CC subjects compared with the T allele carriers (p value for log-rank test 0.02). In conclusion, MTHFR 677 (any T genotype) appears to modulate an individual's susceptibility to gastric cancer, particularly when combined with cigarette smoking and among those with a low intake of fruit and vegetables. Our results also suggest that an aberrant DNA methylation pattern, through impaired folate metabolism, might play a key role in gastric carcinogenesis. A possible survival effect of the MTHFR C677T genotype in gastric cancer patients deserves further investigations with larger sample sizes.
Estimating Aquifer Channel Recharge Using Optical Data Interpretation

Recharge through intermittent and ephemeral stream channels is believed to be a primary aquifer recharge process in arid and semiarid environments. The intermittent nature of precipitation and flow events in these channels, and their often remote locations, makes direct flow and loss measurements difficult and expensive. Airborne and satellite optical images were interpreted to evaluate aquifer recharge due to stream losses on the Frio River in south‐central Texas. Losses in the Frio River are believed to be a major contributor of recharge to the Edwards Aquifer. The results of this work indicate that interpretation of readily available remote sensing optical images can offer important insights into the spatial distribution of aquifer recharge from losing streams. In cases where upstream gauging data are available, simple visual analysis of the length of the flowing reach downstream from the gauging station can be used to estimate channel losses. In the case of the Frio River, the rate of channel loss estimated from the length of the flowing reach at low flows was about half of the loss rate calculated from in‐stream gain‐loss measurements. Analysis based on water‐surface width and channel slope indicated that losses were mainly in a reach downstream of the mapped recharge zone. The analysis based on water‐surface width, however, did not indicate that this method could yield accurate estimates of actual flow in pool and riffle streams, such as the Frio River and similar rivers draining the Edwards Plateau.
Methylprednisolone Administration Improves Axonal Regeneration into Schwann Cell Grafts in Transected Adult Rat Thoracic Spinal Cord

Schwann cell (SC) grafts support the regeneration of axons of numerous spinal cord neurons when placed into transected adult rat midthoracic spinal cord. Clinically, methylprednisolone (MP) has been shown to be neuroprotective if administered within 8 h after spinal cord injury. We investigated whether axonal regrowth into SC grafts is enhanced when MP is administered at the time of spinal cord transection and SC implantation. SCs from adult rat sciatic nerves were purified in culture, suspended in Matrigel, and drawn into semipermeable polymeric channels. MP (30 mg/kg) or vehicle (control) was administered intravenously at 5 min, 2 h, and 4 h to adult Fischer rats after transection at T8 and removal of the next three caudal segments. The rostral cord stump was inserted 1 mm into the channel; the distal end of the channel was capped. Thirty to forty-five days later, the SC/MP group showed large tissue cables in the channels and host cord tissue retained in the rostral end of the channels. Significantly more myelinated axons (1159 +/- 308) were present at the 5-mm level in SC/MP grafts (n = 6) than in SC/vehicle cables (355 +/- 108, n = 5). More unmyelinated than myelinated axons (approximately 4:1, n = 3) were resolved in the cables by electron microscopy. In the SC/MP group, unlike the SC/vehicle group, serotonergic and noradrenergic fibers were detected immunocytochemically 2.5 and 2.0 mm respectively, into the graft; astrocytes were also identified at similar distances from the interface. Fast Blue retrograde tracing (SC/MP, n = 4; SC/vehicle, n = 3) showed that more spinal cord neurons (1116 +/- 113 vs 284 +/- 88, respectively) and spinal cord neurons more distant from the graft (C8 vs C5) responded by extending axons into the graft in the presence of MP. Also, very significantly, supraspinal brain stem neurons extended axons into the graft only when MP was administered (mean 46 vs 0, n = 3). These results indicate that MP improves axonal regenerationn from both spinal cord and brain stem neurons into thoracic SC grafts, possibly by reducing secondary host tissue loss adjacent to the graft.
In vitro and in vivo derived porcine embryos possess similar, but not identical, patterns of Oct4, Nanog, and Sox2 mRNA expression during cleavage development

In vitro culture conditions stress the cleavage stage mammalian embryo and can contribute to reduced developmental potential of cultured embryos. One process that may be altered during embryo culture is the establishment and maintenance of pluripotency. Pluripotency is largely controlled by three genes: Oct4, Nanog, and Sox2. The objective of this study was to determine the expression pattern of Oct4, Nanog, and Sox2 in cleavage stage porcine embryos obtained in vivo or by in vitro fertilization and parthenogenetic activation. We used quantitative, real time PCR to assess the relative amount of each transcript in cleavage stage embryos. We found that Oct4 was transiently activated at the 2‐cell stage (P‐value <0.05) while Nanog and Sox2 were activated at the 4‐cell stage (P‐value <0.05) in in vitro embryos. Embryos derived in vivo showed a similar but not identical pattern of expression of Nanog mRNA been in highest abundance both at the 4 cell and the blastocyst stage. The activation observed at the 4‐cell stage for Nanog and Sox2 was shown to be RNA polymerase II dependent (P‐value <0.05). This study showed that Oct4, Nanog, and Sox2 possess similar, but not identical, patterns of expression between in vitro and in vivo derived porcine embryos. The difference between the amount of transcripts may reflect the reduced developmental potential observed in in vitro cultured embryos. Mol. Reprod. Dev. 75: 1726–1735, 2008. © 2008 Wiley‐Liss, Inc.