Miracle-dz/UniFAR-FTUs huggingface dataset:
Dynamical reconstruction of the exciton in LiF with inelastic x-ray scattering

The absorption of light by materials proceeds through the formation of excitons, which are states in which an excited electron is bound to the valence hole it vacated. Understanding the structure and dynamics of excitons is important, for example, for developing technologies for light-emitting diodes or solar energy conversion. However, there has never been an experimental means to study the time-dependent structure of excitons directly. Here, we use causality-inverted inelastic x-ray scattering (IXS) to image the charge-transfer exciton in the prototype insulator LiF, with resolutions Δt = 20.67 as (2.067 × 10−17 s) in time and Δx = 0.533 Å (5.33 × 10−11 m) in space. Our results show that the exciton has a modulated internal structure and is coherently delocalized over two unit cells of the LiF crystal (≈8 Å). This structure changes only modestly during the course of its life, which establishes it unambiguously as a Frenkel exciton and thus amenable to a simplified theoretical description. Our results resolve an old controversy about excitons in the alkali halides and demonstrate the utility of IXS for imaging attosecond electron dynamics in condensed matter.
Acupuncture for Dysphagia After Chemoradiation Therapy in Head and Neck Cancer: A Case Series Report

Background: Dysphagia is a common side effect following chemoradiation therapy (CRT) in patients with head and neck cancer (HNC). Methods: In this retrospective case series, 10 patients with HNC were treated with acupuncture for radiation-induced dysphagia and xerostomia. All patients were diagnosed with stage III/IV squamous cell carcinoma. In all, 7 of 10 patients were percutaneous endoscopic gastrostomy (PEG) tube dependent when they began acupuncture. Manual acupuncture and electroacupuncture were used once a week. Results: A total of 9 of 10 patients reported various degrees of subjective improvement in swallowing functions, xerostomia, pain, and fatigue levels. Overall, 6 (86%) of 7 PEG tube-dependent patients had their feeding tubes removed after acupuncture, with a median duration of 114 days (range 49 to 368 days) post CRT. One typical case is described in detail. Conclusions: A relatively short PEG tube duration and reduced symptom severity following CRT were observed in these patients. Formal clinical trials are required to determine the causality of the observations.
CMOS Interfacing for Integrated Gas Sensors: A Review

Modern gas sensor technology is becoming an important part of our lives. It has been applied within the home (monitoring CO levels from boilers), the workplace (e.g., checking levels of toxic gases) to healthcare (monitoring gases in hospitals). However, historically the high price of gas sensors has limited market penetration to niche applications, such as safety in mines or petrochemical plants. The high price may be attributed to several different components: (1) cost of a predominantly manual manufacturing process; (2) need for interface circuitry in the form of discrete components on a PCB; and (3) fireproof packaging, making the cost of gas detection instruments typically many hundreds of dollars. Consequently, there has been a considerable effort over the past 20 years, towards the goal of low-cost ($1-$5) gas sensors, employing modern microelectronics technology to manufacture both the sensing element and the signal conditioning circuitry on a single silicon chip. In this paper, we review the emerging field of CMOS gas sensors and focus upon the integration of two main gas-sensing principles, namely, resistive and electrochemical and associated circuitry by CMOS technology. We believe that the combination of CMOS technology with more recent MEMS processing is now mature enough to deliver the exacting demands required to make low-power, low-cost smart gas sensors in high volume and this should result in a new generation of CMOS gas sensors. These new integrated, mass-produced gas sensors could open up mass markets and affect our everyday lives through application in cars, cell phones, watches, etc.
α1F64 Residue at GABAA Receptor Binding Site Is Involved in Gating by Influencing the Receptor Flipping Transitions

GABA receptors (GABAARs) mediate inhibition in the adult brain. These channels are heteropentamers and their ligand binding sites are localized at the β(+)/α(−) interfaces. As expected, mutations of binding-site residues affect binding kinetics but accumulating evidence indicates that gating is also altered, although the underlying mechanisms are unclear. We investigated the impact of the hydrophobic box residue localized at α1(−), F64 (α1F64), on the binding and gating of rat recombinant α1β1γ2 receptors. The analysis of current responses to rapid agonist applications confirmed a marked effect of α1F64 mutations on agonist binding and revealed surprisingly strong effects on gating, including the disappearance of rapid desensitization, the slowing of current onset, and accelerated deactivation. Moreover, nonstationary variance analysis revealed that the α1F64C mutation dramatically reduced the maximum open probability without altering channel conductance. Interestingly, for wild-type receptors, responses to saturating concentration of a partial agonist, P4S, showed no rapid desensitization, similar to GABA-evoked responses mediated by α1F64C mutants. For the α1F64L mutation, the application of the high-affinity agonist muscimol partially rescued rapid desensitization compared with responses evoked by GABA. These findings suggest that α1F64 mutations do not disrupt desensitization mechanisms but rather affect other gating features that obscure it. Model simulations indicated that all of our observations related to α1F64 mutations could be properly reproduced by altering the flipped state transitions that occurred after agonist binding but preceded opening. In conclusion, we propose that the α1F64 residue may participate in linking binding and gating by influencing flipping kinetics.
Event-Related Potentials in Homosexual and Heterosexual Men and Women: Sex-Dimorphic Patterns in Verbal Asymmetries and Mental Rotation

To elucidate neurobiological factors related to gender and sexual orientation, event-related brain potentials of 20 heterosexual (HT) men, 20 HT women, 20 homosexual (HM) men, and 20 HM women were examined for neurophysiological differences. Cognitive tasks which typically elicit sex differences were administered. A mental rotation (MR) task assessed spatial ability, and a divided-visual-field lexical-decision/semantic monitoring task (LD/SM) assessed verbal ability and relative degrees of language lateralization. Slow wave activity recorded during MR was greater for HT men than for HT women and gay men. N400 asymmetries recorded during the LD/SM task revealed differences between men and women, but no intrasex differences.
Fault Detection and Fault Tolerant Operation of a Five Phase PM Motor Drive Using Adaptive Model Identification Approach

Nowadays, the use of multiphase fault tolerant permanent magnet (PM) machines is a suitable solution for increasing the reliability of high-performance motion control applications. This solution requires fault detection, isolation, and control adaptation. For this reason, a new open switch fault detection scheme in voltage-source inverter supplying a PM motor is presented in this paper. The detection method is based on model identification of the motor phase currents. The detection scheme is fast, robust, general, and capable of detecting multiple faults. The control algorithm, detection method, isolation, and reconfiguration strategies are discussed. After that, the proposed method is implemented in the fault tolerant control of a five-phase brushless direct current (BLDC) motor drive. Simulation results in MATLAB/Simulink are shown to demonstrate the effectiveness of the proposed detection technique. Experimental results on a five-phase fault tolerant BLDC motor validate the theoretical developments.
Efficient expression of the human papillomavirus type 16 L1 protein in epithelial cells by using Rev and the Rev-responsive element of human immunodeficiency virus or the cis-acting transactivation element of simian retrovirus type 1

Production of the human papillomavirus (HPV) late gene products L1 and L2 is limited to terminally differentiated keratinocytes. Here, we demonstrate that mRNA encoding the HPV-16 L1 capsid protein contains cis-acting RNA elements that inhibit expression at the posttranscriptional level. While cytoplasmic L1 mRNA is detectable in transfected HeLa cells, L1 protein is not produced. We have identified at least one major inhibitory element that is located within the L1 open reading frame, whereas another negative element had been reported to lie in the 3'-untranslated region of L1. The presence of these elements may explain the lack of HPV late gene expression in undifferentiated epithelial cells. Efficient production of HPV-16 L1 could be achieved with posttranscriptional regulatory elements of human immunodeficiency virus type 1 or simian retrovirus type 1. L1 protein was expressed in the presence of human immunodeficiency virus type 1 Rev from hybrid mRNAs containing the RNA binding site for Rev (Rev-responsive element). In addition, we have achieved efficient expression of L1 from hybrid mRNAs containing a cis-acting transactivation element from simian retrovirus type 1. Our data show that HPV-16 L1 protein production is regulated posttranscriptionally. This regulated expression may allow virus production in terminally differentiated epithelial cells and is probably a conserved and important mechanism for HPV expression.
The Role of the Lumbar Facet Joints in Spinal Stability: Identification of Alternative Paths of Loading

Study Design The role of the facet joints in spinal stability was analyzed using long-segment cadaver spines. Objectives To establish the existence of alternate paths of loading when the facet joints and anulus are compromised. Summary of Background Data It has been reported that facet arthrosis and degeneration never occur without the presence of adjacent disc degeneration. This suggests that intact discs protect the facets from severe loading and degeneration. Based on these studies of spinal mechanics, the authors devised an experiment to further explain the relationship of the disc and the facet in sharing compressive loads. Methods Ten human cadaver spines were placed unsupported in an Instron Model 4206 Tensile Testing Machine. Compressive loads of 1000 N then were applied to the specimens at a rate of 20 N per minute. The facet joints, anterior anulus, and lateral anulus then were destroyed sequentially at L3 and the loading cycles were repeated. The load-deflection curves for each cycle were evaluated and compared with the intact specimen. Results Unilateral and bilateral facetectomies had little affect on the ability of the specimen to support a physiologic load. Facetectomies in combination with anterior anulus destruction showed a significant change in the ability of the specimen to support a load with an extension moment applied. Conclusions The facet joints of the lumbar spine are not the principle support structures in extension. With destruction of the facets, an alternate path of loading is established. The alternate path of loading transfers axial loads to the anulus and anterior longitudinal ligament to support the spine. Although facet joint destruction will not produce acute instability, it will transfer the loads to the adjacent disc and conceivably accelerate its degeneration.
Prevalence of bacterial pathogens causing ocular infections in South India.

BACKGROUND/AIMS The eye may be infected from external sources or through intra-ocular invasion of micro-organisms carried by the blood stream. This study was undertaken to isolate and identify the specific bacterial pathogens causing ocular infections and to determine their in-vitro antibacterial susceptibilities to commonly used antibacterial agents. MATERIALS AND METHODS A retrospective analysis of all patients with clinically diagnosed bacterial ocular infections such as blepharitis, conjunctivitis, internal and external hordeolum, suppurative scleritis, canaliculitis, keratitis, dacryocystitis, preseptal cellulitis, endophthalmitis and panophthalmitis presenting between January 2005 and December 2005 was performed. Extra-ocular and intra-ocular specimens were collected and were subjected to direct microscopy and culture. RESULTS A total of 756 patients with bacterial ocular infections were analyzed, of which 462(61%) eyes had adnexal bacterial infection, 217(28.7%) had corneal infection, 6 (0.8%) had scleral involvement and the remaining 71(9.39%) eyes had infection of the intra-ocular tissues. The predominant bacterial species isolated was S. aureus (195 of 776; 25%) followed by S. pneumoniae (169 of 776; 21.78%) and coagulase negative staphylococci (142 of 776; 18.3%). The largest number of gram-positive isolates were susceptible to cefazolin (545 of 624; 87.34%), chloramphenicol (522 of 624; 83.65%) and gatifloxacin (511 of 624; 81.89%) and gram-negative isolates were to amikacin (127 of 136; 93.38%), gatifloxacin (125 of 136; 91.91%) and ofloxacin (119 of 136; 87.5%), while aerobic actinomycetes were to amikacin (100%), gatifloxacin (14 of 16; 87.5%), chloramphenicol (14 of 16; 87.5%) and ofloxacin (13 of 16; 81.25%). CONCLUSIONS S. aureus frequently causes infections of eyelids and conjunctiva, S. pneumoniae of lacrimal apparatus and cornea and coagulase negative staphylococci causes intra-ocular infections. Of all routinely used antibacterials tested, flouroquinolones, especially gatifloxacin and ofloxacin represented a good choice for treating bacterial ocular infections.
Supporting community-based exercise in long-term neurological conditions: experience from the Long-term Individual Fitness Enablement (LIFE) project

Background: Patients with long-term neurological conditions often have low levels of physical activity and participation in exercise. Exercise referral schemes have been introduced in the UK to encourage physical activity in sedentary and clinical populations but typically exclude patients with long-term neurological conditions. We have developed and evaluated an exercise support system for people with long-term neurological disability, called the Physical Activity Support System, to enable them to use local gym facilities safely and effectively. The intervention: We describe the Physical Activity Support System for people with long-term neurological conditions and provide data on the use of this system in a phase II randomized controlled study trial. The system has five key components: access and transport advice, the fitness instructor, the gym, health professional support and how to exercise safely. Results: Ninety-nine patients with a range of long-term neurological conditions used six different community exercise facilities in Oxfordshire and Birmingham. Average gym attendance was one session per week for 12 weeks. Participants required an average of three 1-hour face-to-face physiotherapy contacts to achieve this. The average direct cost for the support system was £275. Conclusions: The scheme achieved comparable exercise participation to standard GP exercise referral schemes operating in the same centres and offers a relatively cheap, practical and feasible system for supporting people with long-term neurological conditions.
The effects of cascade length, kinetics and feedback loops on biological signal transduction dynamics in a simplified cascade model

How intracellular signals are propagated with appropriate strength, duration and fidelity over time is poorly understood. To address these issues, intracellular signal transduction was studied both analytically and numerically using a simplified cascade model. The main observations can be summarized as follows: when the response kinetics is of the Michaelis–Menten type, the signal strength will always reach the same magnitude as the cascade length increases, regardless of the type of stimulus applied (i.e. either continuous or unitary pulse). However, when the response kinetics is of the Hill type (Hill coefficient >1), there exists a stimulation threshold. If the stimulus is below the threshold, the signal decays toward zero; in contrast, if the stimulus is above the threshold, the signal amplitude reaches a nonzero steady state. The time taken for the signal to proceed through the cascade increases as the half-maximum point, or Hill coefficient, increases, whereas the duration of the output signal at the end of the cascade decreases as the half-maximum point increases. In the presence of positive feedback, the stimulation threshold increases; under these conditions, the feedback strength necessary for bistability changes (with power-law characteristics) inversely related to the length of the cascade. In the presence of negative feedback, oscillations are induced when the Hill coefficient is greater than 1 and the cascade has more than two steps. Likewise, the feedback strength required to generate oscillations changes (again with power-law characteristics) inversely with the length of the cascade.
Definition of Chronic Kidney Disease After Uninephrectomy in Living Donors: What Are the Implications?

Background. Living kidney transplant donors generally have a favorable renal functional outcome postuninephrectomy, but concern remains that a reduced glomerular filtration rate (GFR) postuninephrectomy might have harmful effects. This study examines the short-term (3 months) effect of donor nephrectomy on GFR and the occurrence of stage 3 chronic kidney disease (CKD) postuninephrectomy. Methods. The prevalence of stage 3 CKD (Kidney Disease Quality Outcome Initiative [GFR<60 mL/min/1.73 m2]) was examined in 196 living donors by comparing preuninephrectomy and 3-month postuninephrectomy values of GFR using 125I-iothalamate GFR (iGFR), modification of diet in renal disease estimated GFR (eGFR), Cockcroft-Gault estimated creatinine clearance, and endogenous 24-hr creatinine clearance. The accuracy of GFR estimations for predicting iGFR was also studied. Results. The mean GFR before and after donation were iGFR, 105±18 and 68±13 mL/min/1.73 m2; eGFR, 98±19 and 63±12 mL/min/1.73 m2; Cockcroft-Gault estimated creatinine clearance, 125±33 and 85±22 mL/min/1.73 m2, and endogenous 24-hr creatinine clearance, 133±38 and 86±24 mL/min/1.73 m2, respectively. Stage 3 CKD was found postuninephrectomy in 53 donors (27%) by iGFR and in 73 donors (38%) by eGFR. The prevalence of stage 3 CKD was greater with older age. GFR estimation equations did not accurately predict iGFR, particularly postuninephrectomy. Conclusions. Stage 3 CKD is commonly observed after living kidney donation, particularly in older donors. The long-term impact of stage 3 CKD postuninephrectomy is poorly understood and may not have the same implications as stage 3 CKD in other conditions. eGFR is a poor predictor of true GFR in kidney donors.
Differential Regulation of Multiple Glucose Transporter Genes in Leishmania mexicana *

We have studied the structure and expression of glucose transporter genes in the parasitic protozoan Leishmania mexicana. Three distinct glucose transporter isoforms, LmGT1, LmGT2, and LmGT3, are encoded by single copy genes that are clustered together at a single locus. Quantitation of Northern blots reveals thatLmGT2 mRNA is present at ∼15-fold higher level in promastigotes, the insect stage of the parasite life cycle, compared with amastigotes, the intracellular stage of the life cycle that lives within the mammalian host. In contrast, LmGT1 andLmGT3 mRNAs are expressed at similar levels in both life cycle stages. Transcription of the LmGT genes in promastigotes and axenically cultured amastigotes occurs at similar levels, as measured by nuclear run-on transcription. Consequently, the ∼15-fold up-regulation of LmGT2 mRNA levels in promastigotes compared with amastigotes must be controlled at the post-transcriptional level. Measurement of LmGT2 RNA decay in promastigotes and axenic amastigotes treated with actinomycin D suggests that differential mRNA stability may play a role in regulating glucose transporter mRNA levels in the two life cycle stages.
Self-assembled organic monolayers: model systems for studying adsorption of proteins at surfaces

Self-assembled monolayers (SAMs) of omega-functionalized long-chain alkanethiolates on gold films are excellent model systems with which to study the interactions of proteins with organic surfaces. Monolayers containing mixtures of hydrophobic (methyl-terminated) and hydrophilic [hydroxyl-, maltose-, and hexa(ethylene glycol)-terminated] alkanethiols can be tailored to select specific degrees of adsorption: the amount of protein adsorbed varies monotonically with the composition of the monolayer. The hexa(ethylene glycol)-terminated SAMs are the most effective in resisting protein adsorption. The ability to create interfaces with similar structures and well-defined compositions should make it possible to test hypotheses concerning protein adsorption.
Multilevel inverters with equal or unequal sources for dual-frequency induction heating

Most existing power supplies for induction heating equipment produce voltage at a single (adjustable) frequency. Recently, however, induction heating power supplies that produce voltage at two (adjustable) frequencies have been researched and even commercialized. Dual-frequency power supplies are a significant development for heat-treating workpieces with uneven geometries, such as gears, since different portions of such workpieces are heated dissimilarly at a single frequency and so require a two step process using a single-frequency power supply. On the other hand, a dual-frequency power supply can achieve the desired result for such workpieces in a one step process. This paper proposes the use of multilevel converters for providing induction heating power at two frequencies simultaneously, which may achieve higher efficiency, improved control, reduced electromagnetic interference and greater reliability than existing dual-frequency power supplies. It also describes how the stepping angles for the desired output from such converters can be determined for both the equal and unequal source cases. Furthermore, experimental results are presented as a verification of the analysis.
Automatic 3D ultrasound segmentation of the first trimester placenta using deep learning

Placental volume measured with 3D ultrasound in the first trimester has been shown to be correlated to adverse pregnancy outcomes. This could potentially be used as a screening test to predict the “at risk” pregnancy. However, manual segmentation whilst previously shown to be accurate and repeatable is very time consuming and semi-automated methods still require operator input. To generate a screening tool, fully automated placental segmentation is required. In this work, a deep convolutional neural network (cNN), DeepMedic, was trained using the output of the semi-automated Random Walker method as ground truth. 300 3D ultrasound scans of first trimester placentas were used to train, validate and test the cNN. Compared against the semi-automated segmentation, resultant median (1st Quartile, 3rd Quartile) Dice Similarity Coefficient was 0.73 (0.66, 0.76). The median (1st Quartile, 3rd Quartile) Hausdorff distance was 27 mm (18 mm, 36 mm). We present the first attempt at using a deep cNN for segmentation of 3D ultrasound of the placenta. This work shows that feasible results compared to ground truth were obtained that could form the basis of a fully automatic segmentation method.