Miracle-dz/UniFAR-FTUs huggingface dataset:
Traffic of Secondary Metabolites to Cell Surface in the Red Alga Laurencia dendroidea Depends on a Two-Step Transport by the Cytoskeleton

In Laurencia dendroidea, halogenated secondary metabolites are primarily located in the vacuole named the corps en cerise (CC). For chemical defence at the surface level, these metabolites are intracellularly mobilised through vesicle transport from the CC to the cell periphery for posterior exocytosis of these chemicals. The cell structures involved in this specific vesicle traffic as well as the cellular structures related to the positioning and anchoring of the CC within the cell are not well known. Here, we aimed to investigate the role of cytoskeletal elements in both processes. Cellular and molecular assays were conducted to i) determine the ultrastructural apparatus involved in the vesicle traffic, ii) localise cytoskeletal filaments, iii) evaluate the role of different cytoskeletal filaments in the vesicle transport, iv) identify the cytoskeletal filaments responsible for the positioning and anchoring of the CC, and v) identify the transcripts related to cytoskeletal activity and vesicle transport. Our results show that microfilaments are found within the connections linking the CC to the cell periphery, playing an essential role in the vesicle traffic at these connections, which means a first step of the secondary metabolites transport to the cell surface. After that, the microtubules work in the positioning of the vesicles along the cell periphery towards specific regions where exocytosis takes place, which corresponds to the second step of the secondary metabolites transport to the cell surface. In addition, microtubules are involved in anchoring and positioning the CC to the cell periphery. Transcriptomic analysis revealed the expression of genes coding for actin filaments, microtubules, motor proteins and cytoskeletal accessory proteins. Genes related to vesicle traffic, exocytosis and membrane recycling were also identified. Our findings show, for the first time, that actin microfilaments and microtubules play an underlying cellular role in the chemical defence of red algae.
Aridity Modulates N Availability in Arid and Semiarid Mediterranean Grasslands

While much is known about the factors that control each component of the terrestrial nitrogen (N) cycle, it is less clear how these factors affect total N availability, the sum of organic and inorganic forms potentially available to microorganisms and plants. This is particularly true for N-poor ecosystems such as drylands, which are highly sensitive to climate change and desertification processes that can lead to the loss of soil nutrients such as N. We evaluated how different climatic, abiotic, plant and nutrient related factors correlate with N availability in semiarid Stipa tenacissima grasslands along a broad aridity gradient from Spain to Tunisia. Aridity had the strongest relationship with N availability, suggesting the importance of abiotic controls on the N cycle in drylands. Aridity appeared to modulate the effects of pH, plant cover and organic C (OC) on N availability. Our results suggest that N transformation rates, which are largely driven by variations in soil moisture, are not the direct drivers of N availability in the studied grasslands. Rather, the strong relationship between aridity and N availability could be driven by indirect effects that operate over long time scales (decades to millennia), including both biotic (e.g. plant cover) and abiotic (e.g. soil OC and pH). If these factors are in fact more important than short-term effects of precipitation on N transformation rates, then we might expect to observe a lagged decrease in N availability in response to increasing aridity. Nevertheless, our results suggest that the increase in aridity predicted with ongoing climate change will reduce N availability in the Mediterranean basin, impacting plant nutrient uptake and net primary production in semiarid grasslands throughout this region.
An Evolutionary Algorithm for Minimizing Multimodal Functions

A new evolutionary algorithm for the global optimization of multimodal functions is presented. The algorithm is essentially a parallel direct search method which maintains a populations of individuals and utilizes an evolution operator to evolve them. This operator has two functions. Firstly, to exploit the search space as much as possible, and secondly to form an improved population for the next generation. This operator makes the algorithm to rapidly converge to the global optimum of various difficult multimodal test functions.
What It Means to Be Guinea Worm Free: An Insider’s Account from Ghana’s Northern Region

Abstract. Despite several periods of stagnating guinea worm disease (GWD) incidence in Ghana during its national eradication campaign in the 1990s and early 2000s, the last reported case of GWD was in May 2010. In July 2011, Ghana celebrated the interruption of guinea worm (GW) transmission. Although it has been established that GWD causes disability, pain, and socioeconomic hardship, there is a dearth of population-based evidence collected in post-GW–endemic countries to document the value attributed to GWD eradication by residents in formerly endemic communities. Given Ghana’s recent history of GWD and a concentrated burden of the disease in its Northern Region, a pattern which remained true through to the final stage of the eradication campaign, seven villages in the Northern Region were targeted for a retrospective, cross-sectional study to detail the perceptions, attitudes, and beliefs about the impact of eradication of GWD in northern Ghana. The study revealed that respondents from the sampled communities felt GW eradication improved their socioeconomic conditions, as the impact of infection prohibited the pursuit of individual and social advancement. The value residents placed on the absence of GWD highlights both the impact infection had on the pursuit of social and economic advancement and the newfound ability to be disease-free and productive. Of the 143 respondents, 133 had GWD in the past and were incapacitated for an average of 6 weeks annually per GW infection, with each infected person affected nearly four times in his or her lifetime.
Comparison of different hard, metal-like coatings sprayed by plasma and detonation gun processes

Structure and wear properties of atmospheric plasma sprayed and detonation gun sprayed coatings prepared from an experimental (Ti,Mo)C-28.4%NiCo powder were compared to coatings sprayed from commercially available WC-12%Co and Cr{sub 3}C{sub 2}-25%NiCr powders. All powders had an agglomerated (spray dried) and sintered structure and nearly the same content of the metallic binder of approximately 20 vol.-%. The powders were characterized by SEM (morphology and cross-sections) and X-ray diffraction (phase composition). The coatings were studied by optical microscope, microhardness measurements, X-ray diffraction analysis and by abrasion and erosion wear tests. The X-ray diffraction patterns of the coatings show that the (Ti,Mo)C-28.4%NiCo powder is characterized by high phase stability in both spray processes, whereas the WC-12%Co powder is prone to significant phase transformations during spraying. The results clearly show the high potential of the experimental (Ti,Mo)C-28.4%NiCo coatings in substituting the conventional systems in wear applications. For instance, it was found that plasma spraying of the (Ti,Mo)C-28.4%NiCo powder with an Ar-H{sub 2} plasma gas resulted in coatings with wear resistance comparable to WC-12%Co coatings. However, detonation gun sprayed WC-12%Co coatings showed somewhat better abrasion wear resistance.
Stance Classification of Social Media Users in Independence Movements

Social media and data mining are increasingly being used to analyse political and societal issues. Characterisation of users into socio-demographic groups is crucial to improve these analyses. Here we undertake the classification of social media users as supporting or opposing ongoing independence movements in their territories. Independence movements occur in territories whose citizens have conflicting national identities; users with opposing national identities will then support or oppose the sense of being part of an independent nation that differs from the officially recognised country. We describe a methodology that relies on users' self-reported location to build datasets for three territories -- Catalonia, the Basque Country and Scotland -- and we test language-independent classifiers using four types of features. We show the effectiveness of the approach to build large annotated datasets, and the ability to achieve accurate, language-independent classification performances ranging from 85% to 97% for the three territories under study.
Effectiveness of a Web 2.0 Intervention to Increase Physical Activity in Real-World Settings: Randomized Ecological Trial

Background The translation of Web-based physical activity intervention research into the real world is lacking and becoming increasingly important. Objective To compare usage and effectiveness, in real-world settings, of a traditional Web 1.0 Web-based physical activity intervention, providing limited interactivity, to a Web 2.0 Web-based physical activity intervention that includes interactive features, such as social networking (ie, status updates, online “friends,” and personalized profile pages), blogs, and Google Maps mash-ups. Methods Adults spontaneously signing up for the freely available 10,000 Steps website were randomized to the 10,000 Steps website (Web 1.0) or the newly developed WALK 2.0 website (Web 2.0). Physical activity (Active Australia Survey), quality of life (RAND 36), and body mass index (BMI) were assessed at baseline, 3 months, and 12 months. Website usage was measured continuously. Analyses of covariance were used to assess change over time in continuous outcome measures. Multiple imputation was used to deal with missing data. Results A total of 1328 participants completed baseline assessments. Only 3-month outcomes (224 completers) were analyzed due to high attrition at 12 months (77 completers). Web 2.0 group participants increased physical activity by 92.8 minutes per week more than those in the Web 1.0 group (95% CI 28.8-156.8; P=.005); their BMI values also decreased more (–1.03 kg/m2, 95% CI –1.65 to -0.41; P=.001). For quality of life, only the physical functioning domain score significantly improved more in the Web 2.0 group (3.6, 95% CI 1.7-5.5; P<.001). The time between the first and last visit to the website (3.57 vs 2.22 weeks; P<.001) and the mean number of days the website was visited (9.02 vs 5.71 days; P=.002) were significantly greater in the Web 2.0 group compared to the Web 1.0 group. The difference in time-to-nonusage attrition was not statistically significant between groups (Hazard Ratio=0.97, 95% CI 0.86-1.09; P=.59). Only 21.99% (292/1328) of participants (n=292 summed for both groups) were still using either website after 2 weeks and 6.55% (87/1328) were using either website after 10 weeks. Conclusions The website that provided more interactive and social features was more effective in improving physical activity in real-world conditions. While the Web 2.0 website was visited significantly more, both groups nevertheless displayed high nonusage attrition and low intervention engagement. More research is needed to examine the external validity and generalizability of Web-based physical activity interventions. Trial Registration Australian New Zealand Clinical Trials Registry: ACTRN12611000253909; https://anzctr.org. au /Trial/Registration/TrialReview.aspx? id=336588&isReview=true (Archived by WebCite at http://www.webcitation.org/6ufzw 2HxD)
Thermal environmental effects on free vibration of functionally graded isosceles triangular microplates

ABSTRACT The free vibration of the functionally graded isosceles triangular microplates in thermal environments is investigated. The modified strain gradient theory together with the first-order shear deformation theory of plates is adopted to formulate the problem. The material properties are assumed to be graded in the thickness direction. The Chebyshev–Ritz method is chosen as the solution procedure. After demonstrating the fast rate of convergence and accuracy of the method, the effects of temperature rise, length scale parameters, material gradient index, different boundary conditions, apex angle, and width-to-thickness ratio on the free vibration of triangular microplates are studied.
Pharmacokinetics of the Protein Microbicide 5P12-RANTES in Sheep following Single-Dose Vaginal Gel Administration

ABSTRACT 5P12-RANTES, a chemokine analogue that potently blocks the HIV CCR5 coreceptor, is being developed as both a vaginal and rectal microbicide for prevention of sexual transmission of HIV. Here, we report the first pharmacokinetic data for 5P12-RANTES following single-dose vaginal gel administration in sheep. Aqueous gel formulations containing low (1.24-mg/ml), intermediate (6.18-mg/ml), and high (32.0-mg/ml; suspension-type gel) concentrations of 5P12-RANTES were assessed via rheology, syringeability, and in vitro release testing. Following vaginal gel administration to sheep, 5P12-RANTES concentrations were measured in vaginal fluid, vaginal tissue, and serum over a 96-h period. All gels showed non-Newtonian pseudoplastic behavior, with the high-concentration gels exhibiting a greater viscosity and cohesive structure than the intermediate- and low-concentration gels. In in vitro release testing, >90% 5P12-RANTES was released from the low- and intermediate-concentration gels after 72 h. For the high-concentration gel, ∼50% 5P12-RANTES was detected, attributed to protein denaturation during lyophilization and/or subsequent solvation of the protein within the gel matrix. In sheep, 5P12-RANTES concentrations in vaginal fluid, vaginal tissue, and serum increased in a dose-dependent manner. The highest concentrations were measured in vaginal fluid (105 to 107 ng/ml), followed by vaginal tissue (104 to 106 ng/ml). Both of these concentration ranges are several orders of magnitude above the reported half-maximal inhibitory concentrations. The lowest concentration was measured in serum (<102 ng/ml). The 5P12-RANTES pharmacokinetic data are similar to those reported previously for other candidate microbicides. These data, coupled with 5P12-RANTES's potency at picomolar concentrations, its strong barrier to resistance, and the full protection that it was observed to provide in a rhesus macaque vaginal challenge model, support the continued development of 5P12-RANTES as a microbicide.
The Na+/Ca2+, K+ exchanger NCKX4 is required for efficient cone-mediated vision

Calcium (Ca2+) plays an important role in the function and health of neurons. In vertebrate cone photoreceptors, Ca2+ controls photoresponse sensitivity, kinetics, and light adaptation. Despite the critical role of Ca2+ in supporting the function and survival of cones, the mechanism for its extrusion from cone outer segments is not well understood. Here, we show that the Na+/Ca2+, K+ exchanger NCKX4 is expressed in zebrafish, mouse, and primate cones. Functional analysis of NCKX4-deficient mouse cones revealed that this exchanger is essential for the wide operating range and high temporal resolution of cone-mediated vision. We show that NCKX4 shapes the cone photoresponse together with the cone-specific NCKX2: NCKX4 acts early to limit response amplitude, while NCKX2 acts late to further accelerate response recovery. The regulation of Ca2+ by NCKX4 in cones is a novel mechanism that supports their ability to function as daytime photoreceptors and promotes their survival. DOI: http://dx.doi. org/10.7554/eLife.24550. 001
The Relationship Between Range of Motion and Injuries in Adolescent Dancers and Sportspersons: A Systematic Review

Background: The frequent and intensive training and performance of pre-professional ballet dancers and sportspersons is offered at a time when young ballet dancers and young athletes may be vulnerable to injury due to the progress through adolescence and growth spurts. Hypothesis: There are changes in range of motion during the progress through adolescence and growth periods in dancers and sportspersons. These changes in ROM can be linked to the increase of injury. Objectives: The primary aim of this systematic review is to determine whether there are changes in ROM during the progress through adolescence and growth spurts in dancers and sportspersons. The secondary aim is to determine whether these changes can predict the risk of injuries for adolescent dancers and sportspersons. Search strategy: Pubmed, Cochrane Register of Controlled Trails (CENTRAL), Cochrane Database of Systematic Reviews (CDSR), EBSCO Host databases: CINAHL Plus, MEDLINE, SPORTDiscus, Embase were searched using MeSH terms. Manual search in the Journal of Dance Medicine and Science and screening of the reference lists of identified studies and reviews was conducted. Selection criteria: Studies included adolescent dancers and sportspersons, aged 8–18, both sexes, growth spurt related to changes in ROM and injury incidence. Data collection and analysis: Search strategy was performed in the flow diagram of the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA). Two reviewers independently appraised each included study using Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) for methodological quality of the included studies. For data extraction, the following information was systematically extracted: first author and year of publication, study design, participants (sample size of mean age), age, maturation (if assessed), intervention, outcome(s), and some notes of each study. For evaluation of the risk of bias and precision the Research Triangle Institute Item Bank (RTI-IB) is included. Main results: Seven observational studies met the inclusion criteria of this current review. The results of this review suggest that there are changes in ROM during the progress through adolescence and growth spurts in dancers and sportspersons. These changes may lead to an increase in injury incidence. Conclusion: There is evidence linking to changes in ROM during the progress through adolescence and growth spurts in dancers and sportspersons. These changes in ROM may be related to injury incidence.
A Robust Fault-Tolerant and Scalable Cluster-Wide Deduplication for Shared-Nothing Storage Systems

Deduplication has been largely employed in distributed storage systems to improve space efficiency. Traditional deduplication research ignores the design specifications of shared-nothing distributed storage systems such as no central metadata bottleneck, scalability, and storage rebalancing. Further, deduplication introduces transactional changes, which are prone to errors in the event of a system failure, resulting in inconsistencies in data and deduplication metadata. In this paper, we propose a robust, fault-tolerant and scalable cluster-wide deduplication that can eliminate duplicate copies across the cluster. We design a distributed deduplication metadata shard which guarantees performance scalability while preserving the design constraints of shared-nothing storage systems. The placement of chunks and deduplication metadata is made cluster-wide based on the content fingerprint of chunks. To ensure transactional consistency and garbage identification, we employ a flag-based asynchronous consistency mechanism. We implement the proposed deduplication on Ceph. The evaluation shows high disk-space savings with minimal performance degradation as well as high robustness in the event of sudden server failure.
High Performance Hollow Metal–Organic Framework Nanoshell‐Based Etalons for Volatile Organic Compounds Detection

A novel high performance optical metal–organic framework (MOF) sensor is presented by means of hollow MOF nanoshell‐based etalon (HMNSE), which allows for selective volatile organic compound (VOC) detection with distinct color output and high efficiency of optical transduction. The HMNSE is constructed by integrating hollow MOF nanoshell arrays between the reflective surfaces of silicon wafer and metal layer, and features ultrathin shell thickness (<100 nm) and macropores within a submicron thin film, which provides appropriate optical thickness, tunable interference color, and fast mass transport all at one time. Due to the rational design of optical motif, the HMNSE has attained the largest optical response so far for ultrathin MOF toward VOC detection. Selective detection on vapor phase alcohols, ketones, nitriles, cyclohexane/benzene, and xylene isomers has been exhibited, which reflected well the characteristic effect of size exclusion and chemical interaction between the MOF and VOCs. The synergistic combination of enhanced reflectance peak and optical shift has led to visible color change with unprecedented high saturation upon VOC exposure. Wide dynamic range, ultrafast kinetics, and excellent reversibility and stability have also been achieved, rendering HMNSE promising for low‐cost, real‐time, and on‐site detection.
Analysis of Plasminogen Genetic Variants in Multiple Sclerosis Patients

Multiple sclerosis (MS) is a prevalent neurological disease of complex etiology. Here, we describe the characterization of a multi-incident MS family that nominated a rare missense variant (p.G420D) in plasminogen (PLG) as a putative genetic risk factor for MS. Genotyping of PLG p.G420D (rs139071351) in 2160 MS patients, and 886 controls from Canada, identified 10 additional probands, two sporadic patients and one control with the variant. Segregation in families harboring the rs139071351 variant, identified p.G420D in 26 out of 30 family members diagnosed with MS, 14 unaffected parents, and 12 out of 30 family members not diagnosed with disease. Despite considerably reduced penetrance, linkage analysis supports cosegregation of PLG p.G420D and disease. Genotyping of PLG p.G420D in 14446 patients, and 8797 controls from Canada, France, Spain, Germany, Belgium, and Austria failed to identify significant association with disease (P = 0.117), despite an overall higher prevalence in patients (OR = 1.32; 95% CI = 0.93–1.87). To assess whether additional rare variants have an effect on MS risk, we sequenced PLG in 293 probands, and genotyped all rare variants in cases and controls. This analysis identified nine rare missense variants, and although three of them were exclusively observed in MS patients, segregation does not support pathogenicity. PLG is a plausible biological candidate for MS owing to its involvement in immune system response, blood-brain barrier permeability, and myelin degradation. Moreover, components of its activation cascade have been shown to present increased activity or expression in MS patients compared to controls; further studies are needed to clarify whether PLG is involved in MS susceptibility.