Miracle-dz/UniFAR-FTUs huggingface dataset:
Tobacco and cancer: epidemiology and the laboratory.

Tobacco smoke contains many mutagenic and carcinogenic chemicals. Both whole tobacco smoke and extracts induce tumors in experimental animals. Work with carcinogen-macromolecule adducts provided evidence for the action of specific chemicals. Molecular epidemiology studies suggested that point mutations in tumor-suppressor genes (e.g., p53) and oncogenes (e.g., ras) may be specific both for the type of tumor and for the critical environmental exposure. The consistency among investigations on oncogene/tumor-suppressor gene mutations in lung cancer (and other tobacco-related cancers) in smokers is highly suggestive, although we still lack information about the time sequence between exposure, gene mutation, and cancer onset. Current work that deserves emphasis includes investigations revealing that lungs of smokers contain benzo[a]pyrene diol-epoxide-guanine DNA adducts, which are in accordance with the type of mutations found in K-ras or p53 genes (G to T transversions). In addition, DNA in human exfoliated bladder cells showed a derivative of 4-aminobiphenyl as a main adduct; there was also an association between smoking habits (amount and type of tobacco) and the levels of both DNA adducts and hemoglobin adducts formed by aromatic amines. Increasing evidence indicates that genetically based metabolic polymorphisms exert a role in modulating individual susceptibility to the action of tobacco carcinogens. Overall, the weight of evidence strongly supports the causal nature of the association between smoking and cancer and falsifies Fisher's hypothesis that the association was due to confounding by genetic predisposition.
Preparation and use of preconstructed orders, order sets, and order menus in a computerized provider order entry system.

OBJECTIVE To describe the configuration and use of the computerized provider order entry (CPOE) system used for inpatient and outpatient care at the authors' facility. DESIGN Description of order configuration entities, use patterns, and configuration changes in a production CPOE system. MEASUREMENTS The authors extracted and analyzed the content of order configuration entities (order dialogs, preconfigured [quick] orders, order sets, and order menus) and determined the number of orders entered in their production order entry system over the previous three years. The authors measured use of these order configuration entities over a six-month period. They repeated the extract two years later to measure changes in these entities. RESULTS CPOE system configuration, conducted before and after first production use, consisted of preparing 667 order dialogs, 5,982 preconfigured (quick) orders, and 513 order sets organized in 703 order menus for particular contexts, such as admission for a particular diagnosis. Fifty percent of the order dialogs, 57% of the quick orders, and 13% of the order sets were used within a six-month period. Over the subsequent two years, the volume of order configuration entities increased by 26%. CONCLUSIONS These order configuration steps were time-consuming, but the authors believe they were important to increase the ordering speed and acceptability of the order entry software. Lessons learned in the process of configuring the CPOE ordering system are given. Better understanding of ordering patterns may make order configuration more efficient because many of the order configuration entities that were created were not used by clinicians.
Statistical alignment based on fragment insertion and deletion models

MOTIVATION The topic of this paper is the estimation of alignments and mutation rates based on stochastic sequence-evolution models that allow insertions and deletions of subsequences ('fragments') and not just single bases. The model we propose is a variant of a model introduced by Thorne et al., (J. Mol. Evol., 34, 3-16, 1992). The computational tractability of the model depends on certain restrictions in the insertion/deletion process; possible effects we discuss. RESULTS The process of fragment insertion and deletion in the sequence-evolution model induces a hidden Markov structure at the level of alignments and thus makes possible efficient statistical alignment algorithms. As an example we apply a sampling procedure to assess the variability in alignment and mutation parameter estimates for HVR1 sequences of human and orangutan, improving results of previous work. Simulation studies give evidence that estimation methods based on the proposed model also give satisfactory results when applied to data for which the restrictions in the insertion/deletion process do not hold. AVAILABILITY The source code of the software for sampling alignments and mutation rates for a pair of DNA sequences according to the fragment insertion and deletion model is freely available from http://www.math.uni-frankfurt.de/~stoch/software/mcmcsalut under the terms of the GNU public license (GPL, 2000).
Controlled release of 5-fluorouracil and progesterone from magnetic nanoaggregates

Background The potential use of magnetic nanoparticles in biomedical applications has witnessed an exponential growth in recent years. Methods In this study, we used nanoaggregates of magnetic nanoparticles as carriers for controlled drug delivery. The nanoaggregates are formed due to the presence of the block copolymer of polyethylene oxide-polypropylene oxide (Pluronic F-68) and beta-cyclodextrin that surround the magnetic core of the nanoparticles. The administration of the drug carriers occurs by inhalation, and the drug is delivered systemically via the pulmonary route. We tested the delivery of 5-fluorouracil and progesterone, which are used as models of hydrophilic and hydrophobic drugs, respectively. Results The estimated nanoaggregates’ diameters are between 293 nm ± 14.65 nm and 90.2 nm ± 4.51 nm, respectively. In-situ and post-synthesis techniques are two approaches for drug loading. The polymer composition of nanoaggregates and initial drug concentration showed a significant effect on both the drug entrapment efficiency and release kinetics. Average drug entrapment efficiencies ranged between 16.11% and 83.25%. In-situ loaded samples showed significantly slower release rates. The drug release mechanism is investigated by mathematical curve fitting to different drug release kinetics models. In most cases, the Peppas model has shown good correlations (coefficients of correlation, R2, between 0.85 and 0.99) with the examined release profiles. The estimated release indices are below 0.5, which indicates the Fickian diffusion mechanism. For samples with an initial burst effect, the modified Peppas model can provide a better understanding of the drug release mechanism, both in the samples loaded with progesterone, or those high polymer concentrations. Conclusion Our work showed prolonged delivery of drugs (5-fluorouracil and progesterone) by diffusion from nanoaggregates, with the potential to reduce dose-related adverse effects.
Essential Genetic Interactors of SIR2 Required for Spatial Sequestration and Asymmetrical Inheritance of Protein Aggregates

Sir2 is a central regulator of yeast aging and its deficiency increases daughter cell inheritance of stress- and aging-induced misfolded proteins deposited in aggregates and inclusion bodies. Here, by quantifying traits predicted to affect aggregate inheritance in a passive manner, we found that a passive diffusion model cannot explain Sir2-dependent failures in mother-biased segregation of either the small aggregates formed by the misfolded Huntingtin, Htt103Q, disease protein or heat-induced Hsp104-associated aggregates. Instead, we found that the genetic interaction network of SIR2 comprises specific essential genes required for mother-biased segregation including those encoding components of the actin cytoskeleton, the actin-associated myosin V motor protein Myo2, and the actin organization protein calmodulin, Cmd1. Co-staining with Hsp104-GFP demonstrated that misfolded Htt103Q is sequestered into small aggregates, akin to stress foci formed upon heat stress, that fail to coalesce into inclusion bodies. Importantly, these Htt103Q foci, as well as the ATPase-defective Hsp104Y662A-associated structures previously shown to be stable stress foci, co-localized with Cmd1 and Myo2-enriched structures and super-resolution 3-D microscopy demonstrated that they are associated with actin cables. Moreover, we found that Hsp42 is required for formation of heat-induced Hsp104Y662A foci but not Htt103Q foci suggesting that the routes employed for foci formation are not identical. In addition to genes involved in actin-dependent processes, SIR2-interactors required for asymmetrical inheritance of Htt103Q and heat-induced aggregates encode essential sec genes involved in ER-to-Golgi trafficking/ER homeostasis.
Organizational commitment, job satisfaction, and turnover among psychiatric technicians.

Abstract : A study is reported of the variations in organizational commitment and job satisfaction, as related to subsequent turnover in a sample of recently-employed psychiatric technician trainees. A longitudinal study was made across a 10 1/2 month period, with attitude measures collected at four points in time. For this sample, job satisfaction measures appeared better able to differentiate future stayers from leavers in the earliest phase of the study. With the passage of time, organizational commitment measures proved to be a better predictor of turnover, and job satisfaction failed to predict turnover. The findings are discussed in the light of other related studies, and possible explanations are examined. (Modified author abstract)
An analytical framework to design a Dynamic Frequency Control scheme for microgrids using energy storage

Microgrids with increased penetration of renewables have significant frequency excursions to power generation changes. A straight forward approach to solve this problem is by enhancing the inertia of the system using energy storage (ES). They provide Dynamic Frequency Control (DFC) support to the interconnected Distributed Energy Resources (DERs) in the microgrid. However, the amount of inertial support required from the ES varies based on the type of interconnected DERs, the amount of load change and many other factors. This paper proposes an analytical framework for calculating the inertia required from the ES systems during a generation change. A case study to corroborate the proposed framework for the DFC scheme has also been studied.
Mitigation of Inter-Cell Interference Utilizing Carrier Allocation in Visible Light Communication System

It is necessary in visible light communication where different information from adjacent cells is distinguishable without inter-cell interference for indoor localization-based services and positioning systems. In order to mitigate inter-cell interference, a carrier allocation-visible light communication system, adopting various carriers among the system's respective cells, is suggested. The effects of inter-cell interference for a single channel and the proposed systems are investigated by experimentation with simultaneous transmissions of QPSK signals.
Kin selection may contribute to lek evolution and trait introgression across an avian hybrid zone

Understanding the mechanism(s) that favour cooperation among individuals competing for the same resources provides direct insights into the evolution of grouping behaviour. In a hybrid zone between golden‐/yellow‐collared (Manacus vitellinus) and white‐collared (Manacus candei) manakins, males form aggregations composed of white and yellow males solely to attract females (‘mixed leks’). Previous work shows that yellow males in these mixed leks experience a clear mating advantage over white males, resulting in the preferential introgression of yellow plumage allele(s) into the white species. However, the yellow male mating advantage only occurs in mixed leks with high frequencies of yellow males, and only a few of these males probably mate. Hence, it remains unclear why unsuccessful males join leks. Here, we used microsatellite markers to estimate pairwise relatedness among males within and between leks to test whether indirect genetic benefits of helping kin (‘kin selection’) can promote grouping. We found that yellow males are significantly more related to each other within than between leks, while relatedness among white males did not differ within and between leks. This suggests that yellow males may indirectly enhance their own reproductive success by preferentially lekking with relatives because yellow plumage is under positive frequency‐dependent selection (positive FDS). Our results are consistent with the hypothesis that kin selection may promote grouping and facilitate positive FDS for yellow males, mediating the movement of yellow plumage across this hybrid zone.
Enhanced Line Search: A novel method to accelerate Parafac

The ALS algorithm, used to fit the Parafac model, sometimes needs a large number of iterations before converging. The slowness in convergence can be due to the large size of the data, or to the presence of degeneracies, etc. Several methods have been proposed to speed up the algorithm, some of which are compression [3], and Line Search [2]. In this paper, after a description of Parafac, we will present a novel method for speeding up the algorithm that shows better results in simulations compared to the existing methods, especially in the case of degeneracy. The paper gives an application of the method to blindly identify the mixing matrix of an Under-Determined Mixture (UDM), but it can be applied to any N-way decomposition problem.
Molecular design of a nylon‐6 byproduct‐degrading enzyme from a carboxylesterase with a β‐lactamase fold

A carboxylesterase with a β‐lactamase fold from Arthrobacter possesses a low level of hydrolytic activity (0.023 μmol·min−1·mg−1) when acting on a 6‐aminohexanoate linear dimer byproduct of the nylon‐6 industry (Ald). G181D/H266N/D370Y triple mutations in the parental esterase increased the Ald‐hydrolytic activity 160‐fold. Kinetic studies showed that the triple mutant possesses higher affinity for the substrate Ald (Km = 2.0 mm) than the wild‐type Ald hydrolase from Arthrobacter (Km = 21 mm). In addition, the kcat/Km of the mutant (1.58 s−1·mm−1) was superior to that of the wild‐type enzyme (0.43 s−1·mm−1), demonstrating that the mutant efficiently converts the unnatural amide compounds even at low substrate concentrations, and potentially possesses an advantage for biotechnological applications. X‐ray crystallographic analyses of the G181D/H266N/D370Y enzyme and the inactive S112A‐mutant–Ald complex revealed that Ald binding induces rotation of Tyr370/His375, movement of the loop region (N167–V177), and flip‐flop of Tyr170, resulting in the transition from open to closed forms. From the comparison of the three‐dimensional structures of various mutant enzymes and site‐directed mutagenesis at positions 266 and 370, we now conclude that Asn266 makes suitable contacts with Ald and improves the electrostatic environment at the N‐terminal region of Ald cooperatively with Asp181, and that Tyr370 stabilizes Ald binding by hydrogen‐bonding/hydrophobic interactions at the C‐terminal region of Ald.
Scales to assess sleep impairment in Parkinson's disease: Critique and recommendations

There is a broad spectrum of sleep disturbances observed in Parkinson's disease (PD). A variety of scales have been applied to the evaluation of PD sleep and wakefulness, but only a small number have been assessed specifically for clinimetric properties in the PD population. The movement disorder society has commissioned this task force to examine these scales and to assess their use in PD. A systematic literature review was conducted to explore the use of sleep scales in PD and to determine which scales qualified for a detailed critique. The task force members, all of whom have extensive experience in assessing sleep in PD reviewed each of the scales using a structured proforma. Scales were categorized into recommended, suggested and listed according to predefined criteria. A total of 48 potential scales were identified from the search and reviewed. Twenty‐nine were excluded because they did not meet review criteria or were variations of scales already included, leaving 19 scales that were critiqued and rated by the task force based on the rating criteria. Only six were found to meet criteria for recommendation or suggestion by the task force: the PD sleep scale (PDSS) and the Pittsburgh sleep quality index (PSQI) are recommended for rating overall sleep problems to screen and to measure severity, the SCOPA‐sleep (SCOPA) is recommended for rating overall sleep problems both to screen and to measure severity, and for rating daytime sleepiness; the Epworth sleepiness scale (ESS) is recommended for rating daytime sleepiness to screen and to measure severity; the inappropriate sleep composite score (ISCS) is suggested for rating severe daytime sleepiness or sleep attacks to screen and to measure severity; and the Stanford sleepiness scale (SSS) is suggested for rating sleepiness and to measure severity at a specific moment. The task force does not recommend the development of new scales, but emphasizes the need for educational efforts to train physicians in sleep interview techniques and polysomnography. © 2010 Movement Disorder Society
Dynamic change in respiratory resistance during inspiratory and expiratory phases of tidal breathing in patients with chronic obstructive pulmonary disease

Background and objective Chronic obstructive pulmonary disease (COPD) is characterized by persistent airflow limitation consisting of airway obstruction and parenchymal emphysema, with loss of elastic recoil. The forced oscillation technique can detect impairment of lung function by measuring lung impedance during normal tidal breathing. Respiratory resistance (Rrs) in COPD has been well-studied, but the differences in Rrs in the inspiratory and expiratory phases between mild and moderate COPD remain poorly understood. Since airway obstruction in COPD is known to change dynamically during tidal breathing and might affect Rrs, the differences in Rrs during tidal breathing between mild and moderate COPD were evaluated. Methods Mild (n = 13) and moderate (n = 13) COPD patients were recruited at Tokyo University Hospital (Tokyo, Japan). Rrs was measured using MostGraph-01 (Chest MI, Inc, Tokyo, Japan), which depicted Rrs in a frequency-and respiratory cycle-dependent manner in three-dimensional graphics. Rrs was evaluated at 4–35 Hz during tidal breathing. Results Rrs changed dynamically during tidal breathing in COPD. The mean Rrs values were significantly greater in the moderate COPD group than in the mild group. The maximal and minimal Rrs values at higher frequencies in the respiratory cycle were significantly greater in moderate COPD. In inspiratory–expiratory breath analysis, the maximal and minimal Rrs values at 20 Hz and 35 Hz were significantly greater in the moderate group, whereas at 4 Hz they did not differ significantly between the groups. Conclusion Rrs changed dynamically during tidal breathing in patients with COPD. The Rrs values at higher frequencies were greater in moderate COPD than in mild COPD. Rrs at higher frequencies might reflect the degree of airway obstruction in tidal breathing in patients with COPD and might be a useful marker for evaluation of airway obstruction at an early stage of COPD.
The Importance of Talk to Midcareer Women's Development: A Collaborative Inquiry

Using phenomenological methods of heuristic inquiry, nine midcareer women col laborated as co-researchers to explore learning in professional developmental rela tionships. Six months' interview and journal data revealed that women's develop mental relationships are created and sustained largely through talk. Furthermore, they experience not only instrumental, performance-based learning, but also what Mezirow (1991) calls "transformative" learning-learning that significantly revises beliefs, attitudes, and values and results in a changed worldview or perspective. These findings suggest that current definitions of managerial communication may be too narrowly construed, neglecting its potentially developmental function. This study has important implications for midcareer women, human resource develop ers, and communication scholars.
Heat Production and Storage Are Positively Correlated With Measures of Body Size/Composition and Heart Rate Drift During Vigorous Running

Abstract The purposes of this study were to determine the relationships between: (a) measures of body size/composition and heat production/storage, and (b) heat production/storage and heart rate (HR) drift during running at 95% of the velocity that elicited lactate threshold, which was determined for 20 healthy recreational male runners. Subsequently, changes in skin and tympanic temperatures associated with a vigorous 20-min run, HR, and VO2 data were recorded. It was found that heat production was significantly correlated with body mass (r = .687), lean mass (r = .749), and body surface area (BSA, r = .699). Heat storage was significantly correlated with body mass (r = .519), fat mass (r = .464), and BSA (r = .498). The percentage of produced heat stored was significantly correlated with body mass (r = .427), fat mass (r = .455), and BSA (r = .414). Regression analysis showed that the sum of body mass, percentage of body fat, BSA, lean mass, and fat mass accounted for 30% of the variability in heat storage. It was also found that HR drift was significantly correlated with heat storage (r = .383), percentage of produced heat stored (r = .433), and core temperature change (r = .450). It was concluded that heavier runners experienced greater heat production, heat storage, and core temperature increases than lighter runners during vigorous running.
Handling rolling shutter effects on semi-global matching in automotive scenarios

Video sensors based on CMOS technology represent the vast majority of the adopted solutions for image acquisition systems equipped in unmanned vehicles and Advanced Driver Assistance Systems. These sensors typically employ a rolling shutter readout scheme, which causes image distortion in case of motion. This paper investigates how rolling shutter effects influence the performance of Semi-Global Matching, a state of the art dense stereo matching algorithm. In order to exhaustively evaluate those effects, the algorithm is computed over sequences acquired with a dedicated image acquisition system composed by two calibrated and synchronized stereo cameras, the first provided with global shutter sensors and the second with rolling shutter sensors. A pixel-wise comparison between the computed Disparity Space Images allows to determine the error in a field automotive test. An effective correction method is then applied to the rolling shutter Disparity Space Image, aiming to reduce the error and therefore to improve accurate position estimation of obstacles in automotive scenarios.