Miracle-dz/UniFAR-FTUs huggingface dataset:
Persistent decrease in multiple components of the perineuronal net following status epilepticus

In the rodent model of temporal lobe epilepsy, there is extensive synaptic reorganization within the hippocampus following a single prolonged seizure event, after which animals eventually develop epilepsy. The perineuronal net (PN), a component of the neural extracellular matrix (ECM), primarily surrounds inhibitory interneurons and, under normal conditions, restricts synaptic reorganization. The objective of the current study was to explore the effects of status epilepticus (SE) on PNs in the adult hippocampus. The aggrecan component of the PN was studied, acutely (48 h post‐SE), sub‐acutely (1 week post‐SE) and during the chronic period (2 months post‐SE). Aggrecan expressing PNs decreased by 1 week, likely contributing to a permissive environment for neuronal reorganization, and remained attenuated at 2 months. The SE‐exposed hippocampus showed many PNs with poor structural integrity, a condition rarely seen in controls. Additionally, the decrease in the aggrecan component of the PN was preceded by a decrease in hyaluronan and proteoglycan link protein 1 (HAPLN1) and hyaluronan synthase 3 (HAS3), which are components of the PN known to stabilize the connection between aggrecan and hyaluronan, a major constituent of the ECM. These results were replicated in vitro with the addition of excess KCl to hippocampal cultures. Enhanced neuronal activity caused a decrease in aggrecan, HAPLN1 and HAS3 around hippocampal cells in vivo and in vitro, leaving inhibitory interneurons susceptible to increased synaptic reorganization. These studies are the foundation for future experiments to explore how loss of the PN following SE contributes to the development of epilepsy.
Signal-to-Noise Performance of Two Analog Photonic Links Using Different Noise Reduction Techniques

We demonstrate two analog photonic links that use different noise reduction techniques to achieve high gain and low noise figure without electronic amplification. Both links use a high-power, low-noise master oscillator power amplifier as the optical source, a balanced-bridge dual-output LiNbO3 Mach-Zehnder modulator with a record low Vpi = 1.33 V at 12 GHz, and either one or two high-power rear-illuminated photodetectors. In the first link, both outputs of the quadrature-biased modulator are used to illuminate two photodetectors configured for laser noise cancellation, yielding record high gain (> 17.0 dB) and low noise figure (< 6.9 dB) across the 6-12 GHz band. The second link uses low biasing to maximize the signal-to-noise ratio in one of the two modulator outputs, and thus requires only one photo-detector. This link has lower gain (> 12.7 dB) but also record low noise figure (< 5.7 dB) across this same frequency band.
Body mass index kinetics and risk factors of malnutrition one year after radical oesophagectomy for cancer.

OBJECTIVE Malnutrition is common after oesophageal cancer surgery. This study aims to investigate body mass index (BMI) kinetics and the risk factors of malnutrition among 1-year disease-free survivors after radical transthoracic oesophagectomy for cancer. METHODS From a prospective single-institution database, 118 1-year disease-free survivors having undergone a R0 transthoracic oesophagectomy with gastric tubulization between 2000 and 2008 were identified retrospectively. BMI values were collected at the onset of the disease (pre-treatment BMI), at the time of surgery (preoperative BMI), at postoperative 6 months and 1 year after oesophagectomy (1-year BMI). Logistic regression was performed with adjustment for confounders to estimate odds ratios of the factors associated with a 1-year weight loss (WL) of at least 15% of the pre-treatment body weight (BW). RESULTS At the onset of the disease, 5 patients (4%) were underweighted (BMI < 8.5 kg/m²), 65 (55%) were normal (BMI = 18.5-24.9 kg/m²), 36 (31%) were overweighted (BMI > 25 kg/m²) and 12 (10%) were obese (BMI > 30 kg/m²). Mean pre-treatment, preoperative, postoperative 6-month and 1-year BMI values were 24.64 ± 4 kg/m², 23.55 ± 3.8 kg/m², 21.7 ± 3 kg/m² and 21.97 ± 4 kg/m², respectively. One-year WL ≥ 15% of the pre-treatment BW was present in 29 patients (25%): 18 among the 48 patients (37%) with a pre-treatment BMI ≥ 25 and 11 among the 70 patients (15%) with pre-treatment BMI < 25 (P = 0.006). On logistic regression, initial overweighting was the sole independent prognosticator of 1-year postoperative WL of at least 15% of the pre-treatment BW (P = 0.039; OR: 2.96, [1.06-8.32]). CONCLUSIONS Postoperative malnutrition remains a severe problem after oesophageal cancer resection, even in long-term disease-free survivors. Overweight and obese patients are the segment population most exposed to this postoperative malnutrition, suggesting that such surgery could have substantial bariatric effect. A special vigilance programme on the nutritional status of this sub-group of patients should be the rule.
Analysis of Retinal Images Associated with Hypertension and Diabetes

Twenty four retinal images from three groups, normotensive, hypertension and diabetes, were analyzed. The features were extracted, including exudates, bifurcation angle, artery-to-veins diameter ratio, mean artery and veins diameters, form and size of optic disc, and vessel tortuosity. The results showed that exudates appeared in both hypertensive and diabetic groups. For hypertensive group, exudates increased with the years of illness. There was no relationship between exudates and years of illness for diabetic group. No significant changes in the first bifurcation angle among three groups were observed. The mean arterial diameter tended to decrease for hypertensive and diabetic groups while the mean veinal diameter dilated. Compared to the normotensive group, the ratio of arterial diameter to veinal diameter decreased for both hypertensive and diabetic group. The form and size changes of the optic disc were obvious in diabetic group. Hypertensive group showed tortuous blood vessels. No tortuous blood vessels were observed in the diabetic group. The study demonstrated that it is feasible to use automatically generated retinal image features as an effective screening method for detection of hypertension and diabetes
Methods for calculating the breeding values of missing traits and their comparison

The objective of this study was to calculate the breeding values (BVs) of traits missing in a selection index. Different traits can be evaluated within the breeding programs of given countries. The BV of a trait can be calculated based on genetic correlations with other traits. Similarly, the BV of a missing trait can be calculated for imported bulls. Two methods of calculation were used. Method A was based on a regression of BVs. Method B was based on performing a de-regression of BVs and their retroactive calculation. Both of these methods were tested using a Czech and a Canadian database of BVs for Holstein bulls. The Czech database of Holstein bulls contained 766 bulls and the Canadian database 851. Two calculations were performed for bulls with low reliability of estimated BVs, the first calculation with their genetic correlation matrix and the second with a genetic correlation matrix created from a set of bulls with high reliability of BVs. These newly calculated BVs (CBVs) were then compared with the national BVs (NBVs) using correlation coefficients. The highest correlations were achieved with high reliability bulls when all traits were included into the calculation (34 evaluated traits). The correlations of these bulls averaged 0.82, with an average standard deviation of 0.19. The lowest correlations were found when low reliability bulls were included and the genetic correlation matrix from the high reliability bulls was applied. That average correlation was 0.74 and standard deviation 0.25. When only 15 traits were evaluated in the model, the average correlation for all sets was 0.68 with standard deviation of 0.28. These results show that calculating the BV of a missing trait is possible using both methods. Method B was slightly more accurate in its prediction.
Channel Selection Policy in Multi-SU and Multi-PU Cognitive Radio Networks with Energy Harvesting for Internet of Everything

Cognitive radio, which will become a fundamental part of the Internet of Everything (IoE), has been identified as a promising solution for the spectrum scarcity. In a multi-SU and multi-PU cognitive radio network, selecting channels is a fundamental problem due to the channel competition among secondary users (SUs) and packet collision between SUs and primary users (PUs). In this paper, we adopt cooperative sensing method to avoid the packet collision between SUs and PUs and focus on how to collect the spectrum sensing data of SUs for cooperative sensing. In order to reduce the channel competition among SUs, we first consider the hybrid transmission model for single SU where a SU can opportunistically access both idle channels operating either the Overlay or the Underlay model and the busy channels by using the energy harvesting technology. Then we propose a competitive set based channel selection policy for multi-SU where all SUs competing for data transmission or energy harvesting in the same channel will form a competitive set. Extensive simulations show that the proposed cooperative sensing method and the channel selection policy outperform previous solutions in terms of false alarm, average throughput, average waiting time, and energy harvesting efficiency of SUs.
Amygdala EphB2 Signaling Regulates Glutamatergic Neuron Maturation and Innate Fear

The amygdala serves as emotional center to mediate innate fear behaviors that are reflected through neuronal responses to environmental aversive cues. However, the molecular mechanism underlying the initial neuron responses is poorly understood. In this study, we monitored the innate defensive responses to aversive stimuli of either elevated plus maze or predator odor in juvenile mice and found that glutamatergic neurons were activated in amygdala. Loss of EphB2, a receptor tyrosine kinase expressed in amygdala neurons, suppressed the reactions and led to defects in spine morphogenesis and fear behaviors. We further found a coupling of spinogenesis with these threat cues induced neuron activation in developing amygdala that was controlled by EphB2. A constitutively active form of EphB2 was sufficient to rescue the behavioral and morphological defects caused by ablation of ephrin-B3, a brain-enriched ligand to EphB2. These data suggest that kinase-dependent EphB2 intracellular signaling plays a major role for innate fear responses during the critical developing period, in which spinogenesis in amygdala glutamatergic neurons was involved. SIGNIFICANCE STATEMENT Generation of innate fear responses to threat as an evolutionally conserved brain feature relies on development of functional neural circuit in amygdala, but the molecular mechanism remains largely unknown. We here identify that EphB2 receptor tyrosine kinase, which is specifically expressed in glutamatergic neurons, is required for the innate fear responses in the neonatal brain. We further reveal that EphB2 mediates coordination of spinogenesis and neuron activation in amygdala during the critical period for the innate fear. EphB2 catalytic activity plays a major role for the behavior upon EphB–ephrin-B3 binding and transnucleus neuronal connections. Our work thus indicates an essential synaptic molecular signaling within amygdala that controls synapse development and helps bring about innate fear emotions in the postnatal developing brain.
Comparison of modified Incremental Conductance and Fuzzy Logic MPPT algorithm using modified CUK converter

Incremental Conductance (IC) algorithm is considered cheap, and easy to implement for Maximum Power Point Tracking (MPPT). However, the IC technique takes time to find the MPP if the voltage is far away from the MPP, and suffers when subjected to rapid change in irradiance. In this paper, IC technique was compared to the modified Incremental Conductance technique (MIC) under the standard test conditions (STC). Then the MIC was compared to a Fuzzy Logic Controller (FLC) MPPT technique in order to evaluate the best and the accurate controller for the MPPT. Results suggest that using FLC and MIC could improve the MPPT and increase the PV system stability.
Phosphodiesterase DosP increases persistence by reducing cAMP which reduces the signal indole

Persisters are bacteria that are highly tolerant to antibiotics due to their dormant state and are of clinical significance owing to their role in infections. Given that the population of persisters increases in biofilms and that cyclic diguanylate (c‐di‐GMP) is an intracellular signal that increases biofilm formation, we sought to determine whether c‐di‐GMP has a role in bacterial persistence. By examining the effect of 30 genes from Escherichia coli, including diguanylate cyclases that synthesize c‐di‐GMP and phosphodiesterases that breakdown c‐di‐GMP, we determined that DosP (direct oxygen sensing phosphodiesterase) increases persistence by over a thousand fold. Using both transcriptomic and proteomic approaches, we determined that DosP increases persistence by decreasing tryptophanase activity and thus indole. Corroborating this effect, addition of indole reduced persistence. Despite the role of DosP as a c‐di‐GMP phosphodiesterase, the decrease in tryptophanase activity was found to be a result of cyclic adenosine monophosphate (cAMP) phosphodiesterase activity. Corroborating this result, the reduction of cAMP via CpdA, a cAMP‐specific phosphodiesterase, increased persistence and reduced indole levels similarly to DosP. Therefore, phosphodiesterase DosP increases persistence by reducing the interkingdom signal indole via reduction of the global regulator cAMP. Biotechnol. Bioeng. 2015;112: 588–600. © 2014 Wiley Periodicals, Inc.
Familial spongiform encephalopathy associated with a novel prion protein gene mutation

Human prion diseases include Creutzfeldt‐Jakob disease, Gerstmann‐Sträussler‐Scheinker disease, fatal familial insomnia, and kuru. Each of these diseases has a specific clinical presentation while spongiform encephalopathy, neuronal loss, and gliosis are their neuropathological hallmarks. We studied a Brazilian family with an autosomal dominant form of dementia. Nine members of the family were affected by a dementia with frontotemporal clinical features, with a mean age at onset of 44.8 ± 3.8 years and a mean duration of symptoms of 4.2 ± 2.4 years. Neuropathological examination of 3 patients showed severe spongiform change and neuronal loss in the deep cortical layers and in the putamen, but minimal gliosis in the most severely affected areas. The putamen and cerebellum, but not other areas of the affected brain, displayed prion protein immunoreactivity. A novel prion protein gene mutation causing a nonconservative substitution at codon 183 was identified in 2 neuropathologically confirmed affected individuals (mother and son). The mutation was transmitted in a mendelian fashion to 12 members of the family. Therefore, we identified a novel prion disease variant characterized by an early onset and long duration of the symptoms, severe spongiform change with minimal gliosis, associated with a prion protein gene mutation at codon 183.
Defect Prevention Techniques and its Usage in Requirements Gathering - Industry Practices

This paper will present various techniques use for a defect prevention (DP) strategy that, when introduced at all stages of a software life cycle, can reduce the time and resources necessary to develop high quality systems. Specifically, how implementing a model-based strategy to reduce Requirement Defects, Development Rework and Manual test development efforts will lead to significant achievements in cost reduction and total productivity. Major focus of this paper is on DP Techniques (for Requirement Phase) used in the Pakistan software industry. Survey data represent which DP techniques are being in use and how much effective are they.
Lipid trajectories as predictors of depressive symptoms: the Young Finns Study.

OBJECTIVE The aim of this study was to identify common trajectories of lipid levels across childhood and early adulthood life span. DESIGN The sample was a subpopulation of 824 young adults (3 to 9 years of age at baseline in 1980) of the ongoing population-based prospective Cardiovascular Risk in Young Finns Study. Lipid levels were determined in 1980, 1983, 1986, and 2001. MAIN OUTCOME MEASURES Depressive symptoms were assessed using a modified version of Beck's Depression Inventory (Beck, 1967) in 1992 and 2001. RESULTS The 2 triglycerides trajectories (steeply vs. moderately increasing) were differently related to depressive symptoms in adulthood. The trajectory showing steep increase over time was associated with higher level of depressive symptoms (M 2.18, 95% CI [2.08, 2.28] vs. 1.99, [1.95, 2.04]). This relationship persisted after adjustments for various risk factors. These triglycerides trajectories accounted for part of the association between high body mass index and depressive symptoms. CONCLUSION A pattern of steeply increasing triglyceride levels throughout childhood and adulthood may be associated with increased the risk of depressive symptoms in adulthood. This pattern may also be one link between obesity and depressive symptoms.
Stable Insulin Preparation for Implanted Insulin Pumps: Laboratory and Animal Trials

The stability and longevity of the polyethylenepolypropylene glycol-stabilized insulin have been tested in vitro and in vivo in an implanted insulininfusion device, the programmable implantable medication system (PIMS). In vitro tests demonstrated long-term compatibility with refill cycles of up to 3 mo, with a preparation of 400 U/ml. Total test period in vitro was 3.2 device-yr (combined time of device use). Insulin retained 88-93% native structure. A major modification, which was biologically active and nonimmunogenic, was identified and partially characterized. Examination of one device by scanning electron microscopy and X-ray microanalysis after 1 yr of insulin infusion revealed surfaces clean of insulin precipitate or other material along the entire insulindelivery pathway. Surface analysis of the silicone-lined polyethylene catheters after 6 mo of infusion also showed no evidence of major insulin precipitate. In vivo stability trials were accomplished with PIMS implanted in diabetic dogs with an intraperitoneal delivery site. There has been no insulin blockage of the catheter of active pumps after 5.1 dog-yr (combined time of trials) of trials (up to 5 mo between refills in a single dog). Structural stability of insulin was analyzed by high-performance liquid chromatography. On average, 90.8% of the insulin sampled from the reservoir in vivo was native insulin, with an average of 96.2% retention of active forms.
In Vitro and In Vivo Synergy of Fosmidomycin, a Novel Antimalarial Drug, with Clindamycin

ABSTRACT Fosmidomycin acts through inhibition of 1-deoxy-d-xylulose 5-phosphate (DOXP) reductoisomerase, a key enzyme of the nonmevalonate pathway of isoprenoid biosynthesis. It possesses potent antimalarial activity in vitro and in murine malaria. In a recent clinical study, fosmidomycin was effective and well tolerated in the treatment of patients with acute uncomplicated Plasmodium falciparum malaria but resulted in an unacceptably high rate of recrudescence. In order to identify a potential combination partner, the interaction of fosmidomycin with a number of antimalarial drugs in current use was investigated in a series of in vitro experiments. Synergy was observed between fosmidomycin and the lincosamides, lincomycin and clindamycin. The efficacy of a combination of fosmidomycin and clindamycin was subsequently demonstrated in the Plasmodium vinckei mouse model.
The relationship between facial shape asymmetry and attractiveness in Mexican students

It has been postulated that symmetric faces are considered more attractive than asymmetric ones because symmetry may signal high quality due to developmental stability. However, other studies showed that both symmetric and slightly asymmetric faces are considered attractive. Here we aim to explore this discrepancy, beginning with the analysis of the normal prevalence of facial symmetry in a population as a necessary first step prior to any attractiveness assessment.
Self-Reported ADHD and Adjustment in College

Objective: To examine the association between self-reported ADHD and college adjustment. Participants: Study 1 included nearly 3400 undergraduates attending a public and private university. Study 2 included 846 students who participated during freshman and sophomore year. Method: Students completed a web-based survey that assessed diagnostic status and adjustment in multiple domains. Results: Relative to other students, those with self-reported ADHD had lower GPAs and reported more academic concerns, depressive symptoms, social concerns, emotional instability, and substance use. Overall, however, most were making satisfactory adjustments in these domains. Benefits of medication treatment were not found. Freshman year ADHD predicted lower GPA, increased academic concerns and alcohol use, and smoking initiation. Conclusion: Students with ADHD struggled relative to peers but most were adjusting reasonably well across multiple domains. Future research should move beyond the use of self-reported diagnosis and more carefully examine the impact of medication treatment in this population. (J. of Att. Dis. 2009; 13(3) 297-309)
Fuzzy AHP of Torpedo System Based on Entropy Weight

Fuzzy analysis hierarchy process (Fuzzy AHP) of torpedo system based on entropy weight is presented in this paper . The method uses triangle fuzzy numbers to establish judgement matrix, improves the unbalance problem of AHP's judgement matrix. The entropy weight is given through fuzzy interval arithmetic based on level sets and optimistic index , then analyses and evaluates torpedo system according to entropy weight. The example shows that fuzzy AHP method of torpedo system based on entropy weight is scientific and reasonable, and has important value of engineering application.
Dietary Intake at 9 Years and Subsequent Body Mass Index in Adolescent Boys and Girls: A Study of Monozygotic Twin Pairs

There is a lack of evidence pointing to specific dietary elements related to weight gain and obesity prevention in childhood and adulthood. Dietary intake and obesity are both inherited and culturally transmitted, but most prospective studies on the association between diet and weight status do not take genetics into consideration. The objective of this study was to document the association between dietary intake at 9 years and subsequent Body Mass Index (BMI) in adolescent monozygotic boy and girl twin pairs. This research used data from 152 twin pairs. Dietary data were collected from two 24-hour-recall interviews with a parent and the child aged 9 years. Height and weight were obtained when the twins were aged 9, 12, 13, and 14 years. Intrapair variability analysis was performed to identify dietary elements related to BMI changes in subsequent years. BMI-discordant monozygotic twin pairs were also identified to analyze the dietary constituents that may have generated the discordance. After eliminating potential confounding genetic factors, pre-adolescent boys who ate fewer grain products and fruit and consumed more high-fat meat and milk had higher BMIs during adolescence; pre-adolescent girls who consumed more grain products and high-fat meat and milk had higher BMIs during adolescence. Energy intake (EI) at 9 years was not related to BMI in subsequent years. Our study suggests that messages and interventions directed at obesity prevention could take advantage of sex-specific designs and‚ eventually‚ genetic information.