Miracle-dz/UniFAR-FTUs huggingface dataset:
βν Integrin Inhibits Chronic and High Level Activation of JNK to Repress Senescence Phenotypes in Drosophila Adult Midgut

Proper control of adult stem cells including their proliferation and differentiation is crucial in maintaining homeostasis of well-organized tissues/organs throughout an organism's life. The Drosophila adult midgut has intestinal stem cells (ISCs), which have been exploited as a simple model system to investigate mechanisms controlling adult tissue homeostasis. Here, we found that a viable mutant of βν integrin (βint-ν), encoding one of two Drosophila integrin β subunits, showed a short midgut and abnormal multilayered epithelia accompanied by an increase in ISC proliferation and misdifferentiation defects. The increase in ISC proliferation and misdifferentiation was due to frequent ISC duplication expanding a pool of ISCs, which was caused by depression of the Notch signalling, and up-regulation of unpaired (upd), a gene encoding an extracellular ligand in the JAK/STAT signalling pathway. In addition, we observed that abnormally high accumulation of filamentous actin (F-actin) was caused in the βint-ν mutant enterocytes. Furthermore, the defects were rescued by suppressing c-Jun N-terminal kinase (JNK) signalling, which was up-regulated in a manner correlated with the defect levels in the above-mentioned βint-ν mutant phenotype. These symptoms observed in young βint-ν mutant midgut were very similar to those in the aged midgut in wild type. Our results suggested that βint-ν has a novel function for the Drosophila adult midgut homeostasis under normal conditions and provided a new insight into possible age-related diseases caused by latent abnormality of an integrin function.
Genetic Variants in microRNA Target Sites of 37 Selected Cancer-Related Genes and the Risk of Cervical Cancer

Objectives Single nucleotide polymorphisms (SNPs) in putative microRNA binding sites (miRSNPs) modulate cancer susceptibility via affecting miRNA binding. Here, we sought to investigate the association between miRSNPs and cervical cancer risk. Methods We first genotyped 41 miRSNPs of 37 cancer-related genes in 338 patients and 334 controls (Study 1), and replicated the significant associations in 502 patients and 600 controls (Study 2). We tested the effects of miRSNPs on microRNA-mRNA interaction by luciferase reporter assay. Results Five SNPs displayed notable association with cervical cancer risk in Study 1. Only IL-16 rs1131445 maintained a significant association with cervical cancer (CT/CC vs. TT, adjusted OR = 1.51, P = 0.001) in Study 2. This association was more evident in the combined data of two studies (adjusted OR = 1.49, P = 0.00007). We also found that miR-135b mimics interacted with IL-16 3′-UTR to reduce gene expression and that the rs1131445 T to C substitution within the putative binding site impaired the interaction of miR-135b with IL-16 3′-UTR. An ELISA indicated that the serum IL-16 of patients with cervical cancer was elevated (vs. controls, P = 0.001) and correlated with the rs1131445 genotype. Patients who carried the rs1131445 C allele had higher serum IL-16 than non-carriers (P<0.001). Conclusions These results support our hypothesis that miRSNPs constitute a susceptibility factor for cervical cancers. rs1131445 affects IL-16 expression by interfering with the suppressive function of miR135b and this variant is significantly associated with cervical cancer risk.
Organophosphate Urinary Metabolite Levels during Pregnancy and after Delivery in Women Living in an Agricultural Community

Little information has been published about pesticide exposures experienced by pregnant women. We measured six dialkyl phosphate (DAP) urinary metabolites of organophosphate (OP) pesticides in 600 pregnant, low-income women living in the Salinas Valley, California, an agricultural area. A total of 28% were employed as farm fieldworkers during pregnancy, and 81% had at least one household member who worked in agriculture. Samples were collected twice during pregnancy (mean = 13 and 26 weeks’ gestation, respectively) and just after delivery (mean = 9 days). As in other studies, dimethyldithiophosphate levels were higher than those of other urinary OP metabolites. Total DAP metabolite levels in samples collected after delivery were higher than in samples collected during pregnancy. Median metabolite levels at the first and second prenatal sampling points and at the postpartum collection were 102.8, 106.8, and 227.2 nmol/L, respectively. Both prenatal and postpartum metabolite levels were higher in these Salinas Valley women than in a sample of women of childbearing age in the general U.S. population (National Health and Nutrition Examination Survey), although the deviation from U.S. reference levels was most pronounced after delivery. Higher DAP metabolite levels in the immediate postpartum period may have implications for estimating dose during pregnancy and for exposure during lactation.
A Mucin-Like Protein of Planthopper Is Required for Feeding and Induces Immunity Response in Plants1[OPEN]

A secreted mucin-like protein in the rice brown planthopper (Nilaparvata lugens) enables insect feeding and induces plant immune responses. The brown planthopper, Nilaparvata lugens, is a pest that threatens rice (Oryza sativa) production worldwide. While feeding on rice plants, planthoppers secrete saliva, which plays crucial roles in nutrient ingestion and modulating plant defense responses, although the specific functions of salivary proteins remain largely unknown. We identified an N. lugens-secreted mucin-like protein (NlMLP) by transcriptome and proteome analyses and characterized its function, both in brown planthopper and in plants. NlMLP is highly expressed in salivary glands and is secreted into rice during feeding. Inhibition of NlMLP expression in planthoppers disturbs the formation of salivary sheaths, thereby reducing their performance. In plants, NlMLP induces cell death, the expression of defense-related genes, and callose deposition. These defense responses are related to Ca2+ mobilization and the MEK2 MAP kinase and jasmonic acid signaling pathways. The active region of NlMLP that elicits plant responses is located in its carboxyl terminus. Our work provides a detailed characterization of a salivary protein from a piercing-sucking insect other than aphids. Our finding that the protein functions in plant immune responses offers new insights into the mechanism underlying interactions between plants and herbivorous insects.
Danusertib, a potent pan-Aurora kinase and ABL kinase inhibitor, induces cell cycle arrest and programmed cell death and inhibits epithelial to mesenchymal transition involving the PI3K/Akt/mTOR-mediated signaling pathway in human gastric cancer AGS and NCI-N78 cells

Gastric cancer is the second leading cause of cancer-related death worldwide, with a poor response to current chemotherapy. Danusertib is a pan-inhibitor of the Aurora kinases and a third-generation Bcr-Abl tyrosine kinase inhibitor with potent anticancer effects, but its antitumor effect and underlying mechanisms in the treatment of human gastric cancer are unknown. This study aimed to investigate the effects of danusertib on cell growth, apoptosis, autophagy, and epithelial to mesenchymal transition and the molecular mechanisms involved in human gastric cancer AGS and NCI-N78 cells. The results showed that danusertib had potent growth-inhibitory, apoptosis-inducing, and autophagy-inducing effects on AGS and NCI-N78 cells. Danusertib arrested AGS and NCI-N78 cells in G2/M phase, with downregulation of expression of cyclin B1 and cyclin-dependent kinase 1 and upregulation of expression of p21 Waf1/Cip1, p27 Kip1, and p53. Danusertib induced mitochondria-mediated apoptosis, with an increase in expression of proapoptotic protein and a decrease in antiapoptotic proteins in both cell lines. Danusertib induced release of cytochrome c from the mitochondria to the cytosol and triggered activation of caspase 9 and caspase 3 in AGS and NCI-N78 cells. Further, danusertib induced autophagy, with an increase in expression of beclin 1 and conversion of microtubule-associated protein 1A/1B-light chain 3 (LC3-I) to LC3-II in both cell lines. Inhibition of phosphatidylinositol 3-kinase (PI3K)/protein kinase B (Akt)/mammalian target of rapamycin (mTOR) and p38 mitogen-activated protein kinase pathways as well as activation of 5′ AMP-activated protein kinase contributed to the proautophagic effect of danusertib in AGS and NCI-N78 cells. SB202191 and wortmannin enhanced the autophagy-inducing effect of danusertib in AGS and NCI-N78 cells. In addition, danusertib inhibited epithelial to mesenchymal transition with an increase in expression of E-cadherin and a decrease in expression of N-cadherin in both cell lines. Taken together, danusertib has potent inducing effects on cell cycle arrest, apoptosis, and autophagy, but has an inhibitory effect on epithelial to mesenchymal transition, with involvement of signaling pathways mediated by PI3K/Akt/mTOR, p38 mitogen-activated protein kinase, and 5′ AMP-activated protein kinase in AGS and NCI-N78 cells.
Interacting with Video

Preface, Irving E. Sigel Foreword, John C. Wright PART I. VIOLENCE, GENDER, AND VIDEO Effects of Interactive Entertainment Technologies on Children's Development, Rodney R. Cocking and Patricia M. Greenfield Mediated Messages: Gender, Class, and Cosmos in Home Video Games, Christine Ward Gailey Contextualization Video Game Violence: From Teenage Mutant Ninja Turtles 1 to Mortal Kombat 2, Marsha Kinder Gender Differences in Children's Constructions of Video Games, Yasmin B. Kafai Impact of Virtual Reality on Young Adults' Physiological Arousal and Aggressive Thoughts: Interaction Versus Observation, Sandra L. Clavert and Siu-Lan Tan PART II. COGNITIVE EFFECTS OF VIDEO GAMES Video Games as Cultural Artifacts, Patricia M. Greenfield Effect of Video Game Practice on Spatial Skills in Girls and Boys, Kaveri Subrahmanyam and Patricia M. Greenfield Effects of Video Game Playing on Measures of Spatial Performance: Gender Effects in Late Adolescence, Lynn Okagaki and Peter A. Frensch Cognitive Socialization by Computer Games in Two Cultures: Inductive Discovery or Mastery of an Iconic Code? , Patricia M. Greenfield, Luigia Camaioni, Paola Ercolani, Laura Weiss, Bennett A. Lauber, and Paola Perucchini Two-Dimensional Representation of Movement Through Three-Dimensional Space: The Role of Video Game Expertise, Patricia M. Greenfield, Craig Brannon, and David Lohr Action Video Games and Informal Education: Effects on Strategies for Dividing Visual Attention, Patricia M. Greenfield, Patricia deWinstanley, Heidi Kilpatrick, and Daniel Kaye Author Index Subject Index
Routing a multi-terminal critical net: Steiner tree construction in the presence of obstacles

This paper presents a new model for VLSI routing in the presence of obstacles, that transforms any routing instance from a geometric problem into a graph problem. It is the first model that allows computation of optimal obstacle-avoiding rectilinear Steiner trees in time corresponding to the instance size (the number of terminals and obstacle border segments) rather than the size of the routing area. For the most common multi-terminal critical nets-those with three or four terminals-we observe that optimal trees can be computed as efficiently as good heuristic trees, and present algorithms that do so. For nets with five or more terminals, we present algorithms that heuristically compute obstacle-avoiding Steiner trees. Analysis and experiments demonstrate that the model and algorithms work well in both theory and practice. <<ETX>>
Calcium Current Activated by Depletion of Calcium Stores in Xenopus Oocytes

Ca2+ currents activated by depletion of Ca2+ stores in Xenopus oocytes were studied with a two-electrode voltage clamp. Buffering of cytosolic Ca2+ with EGTA and MeBAPTA abolished ICl(Ca) and unmasked a current in oocytes that was activated by InsP3 or ionomycin in minutes and by thapsigargin or the chelators themselves over hours. At −60 mV in 10 mM extracellular CaCl2, the current was typically around −90 or −160 nA in oocytes loaded with EGTA or MeBAPTA, respectively. This current was judged to be a Ca2+-selective current for the following reasons: (a) it was inwardly rectifying and reversed at membrane potentials usually more positive than +40 mV; (b) it was dependent on extracellular [CaCl2] with K m = 11.5 mM; (c) it was highly selective for Ca2+ against monovalent cations Na+ and K+, because replacing Na+ and K+ by N-methyl-d-glucammonium did not reduce the amplitude or voltage dependence of the current significantly; and (d) Ca2+, Sr2+, and Ba2+ currents had similar instantaneous conductances, but Sr2+ and Ba2+ currents appeared to inactivate more strongly than Ca2+. This Ca2+ current was blocked by metal ions with the following potency sequence: Mg2+ << Ni2+ ≈ Co2+ ≈ Mn2+ < Cd2+ << Zn2+ << La3+. It was also inhibited by niflumic acid, which is commonly used to block ICl(Ca). PMA partially inhibited the Ca2+ current, and this effect was mostly abolished by calphostin C, indicating that the Ca2+ current is sensitive to protein kinase C. These results are the first detailed electrophysiological characterization of depletion-activated Ca2+ current in nondialyzed cells. Because exogenous molecules and channels are easy to introduce into oocytes and the distortions in measuring ICl(Ca) can now be bypassed, oocytes are now a superior system in which to analyze the activation mechanisms of capacitative Ca2+ influx.
Exploring the relationship between math anxiety and gender through implicit measurement

Math anxiety, defined as a negative affective response to mathematics, is suggested as a strong antecedent for the low visibility of women in the science and engineering workforce. However, the assumption of gender differences in math anxiety is still being studied and results are inconclusive, probably due to the use of explicit measures such as direct questionnaires. Thus, our primary objective was to investigate the effects of math anxiety on numerical processing in males and females by using a novel affective priming task as an indirect measure. Specifically, university students (23 males and 30 females) completed a priming task in which an arithmetic equation was preceded by one of four types of priming words (positive, neutral, negative, or related to mathematics). Participants were required to indicate whether the equation (simple math facts based on addition, subtraction, multiplication, or division) was true or false. People are typically found to respond to target stimuli more rapidly after presentation of an affectively related prime than after an affectively unrelated one. In the current study, shorter response latencies for positive as compared to negative affective primes were found in the male group. An affective priming effect was found in the female group as well, but with a reversed pattern. That is, significantly shorter response latencies were observed in the female group for negative as compared to positive targets. That is, for females, negative affective primes act as affectively related to simple arithmetic problems. In contrast, males associated positive affect with simple arithmetic. In addition, only females with lower or insignificant negative affect toward arithmetic study at faculties of mathematics and science. We discuss the advantages of examining pure anxiety factors with implicit measures which are free of response factors. In addition it is suggested that environmental factors may enhance the association between math achievements and math anxiety in females.
Growth retardation at early life and metabolic adaptation among North Korean children

The high prevalence of obesity is a major public health issue and contributes to the ‘double burden’ of disease in developing countries. Early exposure to poor nutrition may cause metabolic adaptations that, when accompanied by exposure to ‘affluent’ nutrition, may increase the risk for obesity and other metabolic disorders. The aim of this study was to determine differences in energy metabolism and nutritional status between normal-height and growth-retarded North Korean children living in South Korea. A total of 29 children were recruited and underwent measurements of resting energy expenditure (REE), respiratory quotient (RQ), anthropometrics and dietary intake. There was no difference in REE or any assessment of obesity between the growth-retarded and normal-height children. Children who were classified as growth retarded (HAZ<−1.0) or stunted (HAZ<−2.0) had a significantly higher RQ (β=0.036 or 0.060, respectively, P=0.018 or 0.016), independent of sex, age, fat-free mass, fat mass and food quotient, compared with children with normal height. The results from this study, the first from an Asian population, add to the growing body of literature suggesting that undernutrition early in life results in adaptations in energy metabolism that favor fat deposition, increasing the risk of stunted children becoming overweight or obese later in life. Continued research on this topic is warranted, given the continued rise in the prevalence of the double burden in transitional countries.
Can physical activity minimize weight gain in women after smoking cessation?

OBJECTIVES The purpose of this study was to examine prospectively whether exercise can modify weight gain after smoking cessation in women. METHODS Data were analyzed from a 2-year follow-up period (1986-1988) in the Nurses' Health Study, an ongoing cohort of 121,700 US women aged 40 to 75 in 1986. RESULTS The average weight gain over 2 years was 3.0 kg in the 1474 women who stopped smoking, and 0.6 kg among the 7832 women who continued smoking. Among women smoking 1 to 24 cigarettes per day, those who quit without changing their levels of exercise gained an average of 2.3 kg more (95% confidence interval [CI] = 1.9, 2.6) than women who continued smoking. Women who quit and increased exercise by between 8 to 16 MET-hours (the work metabolic rate divided by the resting metabolic rate) per week gained 1.8 kg (95% CI = 1.0, 2.5), and the excess weight gain was only 1.3 kg (95% CI = 0.7, 1.9) in women who increased exercise by more than 16 MET-hours per week. CONCLUSIONS Smoking cessation is associated with a net excess weight gain of about 2.4 kg in middle-aged women. However, this weight gain is minimized if smoking cessation is accompanied by a moderate increase in the level of physical activity.
The Benefit of a Human Bone Marrow Stem Cells Concentrate in addition to an Inorganic Scaffold for Bone Regeneration: An In Vitro Study

Background. This work compares the osteoblastic behaviour of a bone marrow (BM) aspirate and a prepared BM concentrate of nucleated cells associated with a glass reinforced hydroxyapatite composite (GRHC) in a microporous pellet formulation. Methods. BM aspirate (30 mL) was collected during 3 orthopedic surgical procedures, and a concentration system was used to achieve 3 rapid preparations of a concentrate of nucleated cells (3 mL) from the BM aspirates. The BM aspirates (53% cell viability; 2.7 × 106 nucleated cell/mL) and the BM concentrates (76% cell viability; 2 × 107 nucleated cell/mL) were cultured over glass reinforced hydroxyapatite pellets, at the same volume/mass ratio, for 30 days. Cultures performed in standard tissue culture plates were used as control. Results. The colonized BM concentrate/material constructs exhibited a representative osteoblastic proliferation/differentiation pathway, evidenced by a high alkaline phosphatase (ALP) activity, expression of collagen type 1, ALP, BMP-2, M-CSF, RANKL, and OPG, and formation of a calcium phosphate mineralized matrix. A clear improved behaviour was noticed compared to the BM aspirate/material constructs. Conclusions. The results suggest the benefit of using an autologous BM concentrate/material construct in the clinical setting, in bone regeneration applications.
Low voltage ride through control strategy for high-power grid-connected photovoltaic inverter

This paper presents a low voltage ride through (LVRT) control strategy for high-power grid-connected photovoltaic (PV) inverter, which can assure the PV inverter operates under grid faults with sinusoidal output currents. The control strategy of PV inverter is made up of inner current loops and outer voltage loop in a cascade structure under normal working conditions. The outer loop regulates the voltage on dc-link capacitance to the maximum power point of PV arrays, and the inner current loops are composed of four closed loops for positive sequence and negative sequence in synchronous reference frame. If the low voltage fault signal has been detected, the control system should shift to single loops control strategy for low voltage ride through. Finally, a laboratory prototype of 150 kW PV inverter with LCL filter has been implemented to test the theoretical analysis. The feasibility and effectiveness of the proposed LVRT control strategy have been verified by simulation and experimental results.
Large Angular Scale Polarization of the Cosmic Microwave Background Radiation and the Feasibility of Its Detection

In addition to its spectrum and temperature anisotropy, the 2.7 K cosmic microwave background (CMB) is also expected to exhibit a low level of polarization. The spatial power spectrum of the polarization can provide details about the formation of structure in the universe as well as its ionization history. Here we calculate the magnitude of the CMB polarization in various cosmological scenarios, with both an analytic and a numerical method. We then outline the fundamental challenges to measuring these signals and focus on two of them: achieving adequate sensitivity and removing contamination due to foreground sources. We describe the design of a ground-based instrument (Polarization Observations of Large Angular Regions) that could detect polarization of the CMB at large angular scales in the next few years.
Extended Abstract: Revisiting Minimum Cost Reliable Routing in Wireless Mesh Networks

We revisit the problem of computing the path with the minimum cost in terms of the expected number of link layer retransmissions in wireless mesh networks. Unlike previous efforts (such as the popular ETX) we account for the fact that link layer protocols (such as the IEEE 802.11 MAC) incorporate a non-zero but finite number of retransmission attempts per packet. A key observation that motivates this work is that the performance of a path depends not only on the number of links on the path and their qualities, but also on the relative positions of the links on the path. In particular, the closer a lossy link to the destination, the higher is its impact on the performance of that path. We design a new path metric that captures all of the above factors and we call this metric ETOP. In this paper, we provide a synopsis of the analytical computation of ETOP. We also implement a routing strategy based on ETOP on a 25-node experimental testbed and provide sample results to showcase the performance with ETOP.