Miracle-dz/UniFAR-FTUs huggingface dataset:
Application of TSV integration and wafer bonding technologies for hermetic wafer level packaging of MEMS components for miniaturized timing devices

The paper presents different approaches for hermetic wafer level packaging of oscillator components like quartz crystals or silicon resonators. The proposed concepts involve technologies like TSV formation into passive or active silicon wafers, formation of proper bond frames on interposer, ASIC or cap wafers as well as hermetic bonding using AuSn soldering either in wafer to wafer style or with reconfigured components on a carrier wafer.
Phenotypic Differentiation during Migration of Dopaminergic Progenitor Cells to the Olfactory Bulb

A possible source for transplantable neurons in Parkinson's disease are adult olfactory bulb (OB) dopamine (DA) progenitors that originate in the anterior subventricular zone and reach the OB through the rostral migratory stream. We used adult transgenic mice expressing a lacZ reporter directed by an 8.9 kb tyrosine hydroxylase (TH) promoter to investigate the course of DAergic differentiation. Parallel transgene and intrinsic TH mRNA expression occurred during migration of DA interneurons through the mitral and superficial granule cell layers before these cells reached their final periglomerular position. Differential transgene and calcium–calmodulin-dependent protein kinase IV expression distinguished two nonoverlapping populations of interneurons. Transgenic mice carrying a TH8.9kb/lacZ construct with a mutant AP-1 site demonstrated that this element confers OB DA-specific TH gene regulation. These results indicate that DA phenotypic determination is specific to a subset of mobile OB progenitors.
Host-Pathogen Interactions Made Transparent with the Zebrafish Model

The zebrafish holds much promise as a high-throughput drug screening model for immune-related diseases, including inflammatory and infectious diseases and cancer. This is due to the excellent possibilities for in vivo imaging in combination with advanced tools for genomic and large scale mutant analysis. The context of the embryo’s developing immune system makes it possible to study the contribution of different immune cell types to disease progression. Furthermore, due to the temporal separation of innate immunity from adaptive responses, zebrafish embryos and larvae are particularly useful for dissecting the innate host factors involved in pathology. Recent studies have underscored the remarkable similarity of the zebrafish and human immune systems, which is important for biomedical applications. This review is focused on the use of zebrafish as a model for infectious diseases, with emphasis on bacterial pathogens. Following a brief overview of the zebrafish immune system and the tools and methods used to study host-pathogen interactions in zebrafish, we discuss the current knowledge on receptors and downstream signaling components that are involved in the zebrafish embryo’s innate immune response. We summarize recent insights gained from the use of bacterial infection models, particularly the Mycobacterium marinum model, that illustrate the potential of the zebrafish model for high-throughput antimicrobial drug screening.
Variation in Canopy Litterfall Along a Precipitation and Soil Fertility Gradient in a Panamanian Lower Montane Forest

Fertilization experiments in tropical forests have shown that litterfall increases in response to the addition of one or more soil nutrients. However, the relationship between soil nutrient availability and litterfall is poorly defined along natural soil fertility gradients, especially in tropical montane forests. Here, we measured litterfall for two years in five lower montane 1‐ha plots spanning a soil fertility and precipitation gradient in lower montane forest at Fortuna, Panama. Litterfall was also measured in a concurrent nitrogen fertilization experiment at one site. Repeated‐measures ANOVA was used to test for site (or treatment), year, and season effects on vegetative, reproductive and total litterfall. We predicted that total litterfall, and the ratio of reproductive to leaf litterfall, would increase with nutrient availability along the fertility gradient, and in response to nitrogen addition. We found that total annual litterfall varied substantially among 1‐ha plots (4.78 Mg/ha/yr to 7.96 Mg/ha/yr), and all but the most aseasonal plot showed significant seasonality in litterfall. However, litterfall accumulation did not track soil nutrient availability; instead forest growing on relatively infertile soil, but dominated by an ectomycorrhizal tree species, had the highest total litterfall accumulation. In the fertilization plots, significantly more total litter fell in nitrogen addition relative to control plots, but this increase in response to nitrogen (13%) was small compared to variation observed among 1‐ha plots. These results suggest that while litterfall at Fortuna is nutrient‐limited, compositional and functional turnover along the fertility gradient obscure any direct relationship between soil resource availability and canopy productivity.
Bright-Field Dual-Color Chromogenic In Situ Hybridization for Diagnosing Echinoderm Microtubule-Associated Protein-Like 4-Anaplastic Lymphoma Kinase-Positive Lung Adenocarcinomas

Introduction: A subset of lung cancers harbors an EML4-ALK (echinoderm microtubule-associated protein-like 4-anaplastic lymphoma kinase) gene fusion, and detecting this subset may hold therapeutic implications. Many prior studies used fluorescence in situ hybridization (FISH) analysis for this detection, but FISH may have disadvantages including signal decay and dark-field examination that may obscure tissue architecture. In this study, we explored the potential of the ALK-break-apart chromogenic in situ hybridization (CISH) method to detect ALK-rearranged lung cancer. Methods: We examined 15 lung adenocarcinomas with reverse-transcriptase polymerase chain reaction-proven EML4-ALK fusion transcripts and 30 ALK-negative cases. One hundred tumor cells were evaluated by CISH and FISH for each case, and a detailed signal profile was recorded and compared. Results: CISH preserved tissue architecture and cytomorphology considerably and facilitated the signal evaluation using a routine light microscope. Positive rearrangement signals (splits or isolated 3′ signals) were identified in 13 to 78% (mean ± SD, 41% ± 19%) of tumor cells in the ALK-positive cohort and in 0 to 15% (mean ± SD, 6% ± 4%) of cells in the ALK-negative cohort. The two groups were best separated by a cutoff value of 20%, with a sensitivity of 93% and a specificity of 100%. The only false-negative tumor having only 13% CISH-positive cells displayed predominantly (76%) isolated 5′ signals unaccompanied by 3′ signals. FISH showed largely similar signal profiles, and the results were completely concordant with CISH. Conclusions: We have successfully introduced CISH for diagnosing EML4-ALK-positive lung adenocarcinoma. This method allows simultaneous visualization of genetics and tumor cytomorphology and facilitates the molecular evaluation and could be applicable in clinical practice to detect lung cancer that may be responsive to ALK inhibitors.
Augmented reality working planes: a foundation for action and construction at a distance

This paper introduces the concept of augmented reality working planes to action and construction at a distance for mobile outdoor augmented reality systems. We have based our new AR working planes technique on CAD working planes, but by using coordinate systems relative to the body they can be specified and used much more intuitively than on a desktop system. We demonstrate in this paper how AR working planes can be used for the display of information, the manipulation of existing 3D objects, and the creation of new geometry. AR working planes are particularly well suited to supporting 3D modelling in mobile outdoor AR systems. This modelling task is a particularly difficult problem, because the environment is typically at a scale much larger than the user, and direct manipulation techniques can not be used.
Assessment of microscope-integrated indocyanine green angiography during intracranial aneurysm surgery: a retrospective study of 120 patients.

AIMS The purpose of this study was to assess the clinical value of indocyanine green angiography (ICG) in intracranial aneurysm surgery by comparing the findings with postoperative angiographic results. MATERIALS AND METHODS One hundred and twenty patients with 148 intracranial aneurysms were included. ICG angiography was performed before and/or after the aneurysm clipping. A near-infrared excitation light illuminated the operation field, ICG was injected intravenously. The intravenous fluorescence was imaged with a video camera integrated into the microscope. RESULTS A total of 208 investigations of ICG angiography were performed. Aneurysm clipping was applied in 120 patients. Incomplete clipping was detected in four patients. Parent and/or branching artery stenosis was found in five patients. Delayed perfusion of ICG was detected in one patient. Postoperative digital subtraction angiography (DSA) was performed in 108 patients. The postoperative angiographic results were consistent with findings on intraoperative ICG angiograms in 100 patients (92.6%). In three cases, a mild stenosis was seen on DSA, which was not detected intraoperatively using ICG angiogram. In one patient, middle cerebral artery stenosis was found. Three patients had small residual aneurysms found by postoperative DSA. The remaining one developed a severe cerebral vasospasm. CONCLUSIONS ICG angiography is a simple, reliable and cost-effective method. It provides real-time information in detecting the patency of parent, branching, perforating arteries and residual aneurysm. This technique may be a useful adjunct to improve the quality of intracranial aneurysm surgery.
Isogenic adenoviruses type 5 expressing or not expressing the E1A gene: efficiency as virus vectors in the vaccination of permissive and non-permissive species.

We have previously constructed a recombinant adenovirus type 5 (Ad5) vector expressing the gD gene of pseudorabies virus (Ad-gD). In this virus the E1A gene was deleted, so that Ad-gD was replication defective. When high doses of this virus were inoculated into target species, it was nevertheless able to elicit a strong and protective immune response. We have restored a functional E1A gene in Ad-gD, by rescuing the E1A transcription unit in an ectopic position, far from the enhancer sequences of E1A. Unlike Ad-gD, this new virus (Ad-gD-E1A) was able to replicate in non-transcomplementing Vero cells. The kinetics of replication of Ad-gD-E1A were similar to that of the wild-type Ad5 when cells were infected at medium or high m.o. i. Nevertheless, the level of virus replication was low when Ad-gD-E1A was plated at low m.o. i. Cotton rats and mice were vaccinated once with 10(9) to 10(5) TCID50 of each of the two viruses. In both species, Ad-gD and Ad-gD-E1A induced similar antibody responses for each dose tested. Both were able to give a high level of protection against the challenge. However, the protective dose of Ad-gD-E1A was at least 250-fold lower in cotton rats, an Ad5-permissive species, than that of Ad-gD. In mice, a species restricted for Ad5 replication, the protective dose of Ad-gD-E1A was still not significantly different from that of Ad-gD. These data indicate that the protective dose of such an adenovirus vector vaccine for an animal species is strictly linked to the capacity of the virus to replicate in this species, at least in the model used. So, in designing an adequate vector one needs to balance the use of low dose vaccines against risks in terms of biosafety. Nevertheless, for diseases in which the protective immune response is mainly based on the antibody response, defective and non-defective adenovirus vectors should demonstrate similar protective doses.
Impact and Productivity of PhD Graduates of Computer Science/Engineering Departments of Hellenic Universities

This article presents an anatomy of PhD programmes in Hellenic universities' departments of computer science/engineering from the perspective of research productivity and impact. The study aims at showing the dynamics of research conducted in computer science/engineering departments, and after recognizing weaknesses, to motivate the stakeholders to take actions that will improve competition and excellence. Beneficiaries of this investigation are the following entities: a) the departments themselves can assess their performance relative to that of other departments and then set strategic goals and design procedures to achieve them, b) supervisors can assess the part of their research conducted with PhDs and set their own goals, c) former PhDs who can identify their relative success, and finally d) prospective PhD students who can consider the efficacy of departments and supervisors in conducting high-impact research as one more significant factor in designing the doctoral studies they will follow.
Anomaly detection and classification for hyperspectral imagery

Anomaly detection becomes increasingly important in hyperspectral image analysis, since hyperspectral imagers can now uncover many material substances which were previously unresolved by multispectral sensors. Two types of anomaly detection are of interest and considered in this paper. One was previously developed by Reed and Yu to detect targets whose signatures are distinct from their surroundings. Another was designed to detect targets with low probabilities in an unknown image scene. Interestingly, they both operate the same form as does a matched filter. Moreover, they can be implemented in real-time processing, provided that the sample covariance matrix is replaced by the sample correlation matrix. One disadvantage of an anomaly detector is the lack of ability to discriminate the detected targets from another. In order to resolve this problem, the concept of target discrimination measures is introduced to cluster different types of anomalies into separate target classes. By using these class means as target information, the detected anomalies can be further classified. With inclusion of target discrimination in anomaly detection, anomaly classification can be implemented in a three-stage process, first by anomaly detection to find potential targets, followed by target discrimination to cluster the detected anomalies into separate target classes, and concluded by a classifier to achieve target classification. Experiments show that anomaly classification performs very differently from anomaly detection.
Rehabilitation of Reaching and Grasping Function in Severe Hemiplegic Patients Using Functional Electrical Stimulation Therapy

Objective. The aim of this study was to establish the efficacy of a therapeutic intervention based on functional electrical stimulation (FES) therapy to improve reaching and grasping function after severe hemiplegia due to stroke. Methods. A total of 21 subjects with acute stroke were randomized into 2 groups, FES plus conventional occupational and physiotherapy (FES group) or only conventional therapy (control group) 5 days a week for 12 to 16 weeks. A third group of 7 subjects with chronic hemiplegia (at least 5 months poststroke) received only FES therapy (chronic group) and pre—post training changes were compared. FES was applied to proximal and then distal muscle groups during specific motor tasks. At baseline and at the end of treatment, grasping function was assessed using the Rehabilitation Engineering Laboratory Hand Function Test, along with more standard measures of rehabilitation outcome. Results. The FES group improved significantly more than the control group in terms of object manipulation, palmar grip torque, pinch grip pulling force, Barthel Index, Upper Extremity Fugl—Meyer scores, and Upper Extremity Chedoke—McMaster Stages of Motor Recovery. The chronic stroke subjects demonstrated improvements in most categories, but the changes were not statistically significant. Conclusions. FES therapy with upper extremity training may be an efficacious intervention in the rehabilitation of reaching and grasping function during acute stroke rehabilitation.
Efficacy of an extended theory of planned behaviour model for predicting caterers' hand hygiene practices

The main aim of this study was to determine the factors which influence caterers' hand hygiene practices using social cognitive theory. One hundred and fifteen food handlers from 29 catering businesses were observed carrying out 31,050 food preparation actions in their workplace. Caterers subsequently completed the Hand Hygiene Instrument (HHI), which ascertained attitudes towards hand hygiene using constructs from the Theory of Planned Behaviour (TPB) and the Health Belief Model. The TPB provided a useful framework for understanding caterers' implementation of hand hygiene practices, explaining 34% of the variance in hand hygiene malpractices (p < 0.05). Five components were identified as significant predictors of hand hygiene malpractices: attitudes, subjective norms, descriptive norms, perceived behavioural control and intention (p < 0.05). Thus, suggesting that hand hygiene practices cannot be improved solely through the provision of information to individuals. Effective interventions may need to focus on changing the organisational food safety culture.
HLA Class I and Class II Associations in Dengue Viral Infections in a Sri Lankan Population

Background HLA class I and class II alleles have been shown to be associated with the development of dengue hemorrhagic fever (DHF)/dengue shock syndrome (DSS) in different populations. However, the majority of studies have been based on limited numbers of patients. In this study we aimed to investigate the HLA-class I and class II alleles that are positively and negatively associated with the development of DSS in a cohort of patients with DHF and also the alleles associated with development of DHF during primary dengue infections in a Sri Lankan population. Methodology/Principal Findings The allele frequencies of HLA class I and class II alleles were compared in 110 patients with DHF and 119 individuals from the population who had never reported a symptomatic dengue infection at the time of recruitment. We found that HLA-A*31 (corrected P = 0.01) and DRB1*08 (corrected P = 0.009) were associated with susceptibility to DSS when infected with the dengue virus, during secondary dengue infection. The frequency of DRB1*08 allele was 28.7 times higher than in the normal population in patients with DSS. HLA-A*31 allele was increased 16.6 fold in DHF who developed shock when compared to those who did not develop shock. A*24 (corrected P = 0.03) and DRB1*12 (corrected P = 0.041) were strongly associated with the development of DHF during primary dengue infection. Conclusions/Significance These data suggest that certain HLA alleles confer susceptibility/protection to severe dengue infections. As T cell epitope recognition depend on the HLA type of an individual, it would be now important to investigate how epitope specific T cells associate with primary and secondary dengue infections and in severe dengue infections.
A multiple access technique for differential chaos shift keying

Various chaos-based digital communications techniques have been proposed recently. Among them, differential chaos shift keying (DCSK) allows the receiving end to decode the signal using noncoherent detection. This paper proposes and analyses a multiple access scheme for DCSK. A simple 1-dimensional iterative map has been used to generate the chaotic signals for all users. Bit error probabilities have been derived numerically for different numbers of users and computer simulations have been performed to verify the results.
Output-sensitive Complexity of Multiobjective Combinatorial Optimization

We study output-sensitive algorithms and complexity for multiobjective combinatorial optimization problems. In this computational complexity framework, an algorithm for a general enumeration problem is regarded efficient if it is output-sensitive, i.e., its running time is bounded by a polynomial in the input and the output size. We provide both practical examples of MOCO problems for which such an efficient algorithm exists as well as problems for which no efficient algorithm exists under mild complexity theoretic assumptions.
Integration of Amplitude and Phase Statistics for Complete Artifact Removal in Independent Components of Neuromagnetic Recordings

In magnetoencephalography (MEG) and electroencephalography (EEG), independent component analysis is widely applied to separate brain signals from artifact components. A number of different methods have been proposed for the automatic or semiautomatic identification of artifact components. Most of the proposed methods are based on amplitude statistics of the decomposed MEG/EEG signal. We present a fully automated approach based on amplitude and phase statistics of decomposed MEG signals for the isolation of biological artifacts such as ocular, muscle, and cardiac artifacts (CAs). The performance of different artifact identification measures was investigated. In particular, we show that phase statistics is a robust and highly sensitive measure to identify strong and weak components that can be attributed to cardiac activity, whereas a combination of different measures is needed for the identification of artifacts caused by ocular and muscle activity. With the introduction of a rejection performance parameter, we are able to quantify the rejection quality for eye blinks and CAs. We demonstrate in a set of MEG data the good performance of the fully automated procedure for the removal of cardiac, ocular, and muscle artifacts. The new approach allows routine application to clinical measurements with small effect on the brain signal.
The surface of Branhamella catarrhalis: a systematic approach to the surface antigens of an emerging pathogen

The incidence of B. catarrhalis as a cause of otitis media is increasing. As strategies for preventing infections caused by Streptococcus pneumoniae and nontypable H. influenzae are developed, the relative importance of B. catarrhalis will increase further in the next decade. A goal of studies of surface antigens is to identify potential vaccine components. Surface antigens of B. catarrhalis include OMPs, LOS and fimbriae. Preliminary studies indicate that OMPs and LOS are relatively antigenically conserved among strains. Future investigations should be directed toward identifying conserved antigens that will generate protective antibodies.
Rac Activation by the T-Cell Receptor Inhibits T Cell Migration

Background T cell migration is essential for immune responses and inflammation. Activation of the T-cell receptor (TCR) triggers a migration stop signal to facilitate interaction with antigen-presenting cells and cell retention at inflammatory sites, but the mechanisms responsible for this effect are not known. Methodology/Principal Findings Migrating T cells are polarized with a lamellipodium at the front and uropod at the rear. Here we show that transient TCR activation induces prolonged inhibition of T-cell migration. TCR pre-activation leads to cells with multiple lamellipodia and lacking a uropod even after removal of the TCR signal. A similar phenotype is induced by expression of constitutively active Rac1, and TCR signaling activates Rac1. TCR signaling acts via Rac to reduce phosphorylation of ezrin/radixin/moesin proteins, which are required for uropod formation, and to increase stathmin phosphorylation, which regulates microtubule stability. T cell polarity and migration is partially restored by inhibiting Rac or by expressing constitutively active moesin. Conclusions/Significance We propose that transient TCR signaling induces sustained inhibition of T cell migration via Rac1, increased stathmin phosphorylation and reduced ERM phosphorylation which act together to inhibit T-cell migratory polarity.