Miracle-dz/UniFAR-FTUs huggingface dataset:
“Endomicrobia” and Other Bacteria Associated with the Hindgut of Dermolepida albohirtum Larvae

ABSTRACT Symbiotic bacteria residing in the hindgut chambers of scarab beetle larvae may be useful in paratransgenic approaches to reduce larval root-feeding activities on agricultural crops. We compared the bacterial community profiles associated with the hindgut walls of individual Dermolepida albohirtum third-instar larvae over 2 years and those associated with their plant root food source among different geographic regions. Denaturing gradient gel electrophoresis analysis was used with universal and Actinobacteria-specific 16S rRNA primers to reveal a number of taxa that were found consistently in all D. albohirtum larvae but not in samples from their food source, sugarcane roots. These taxa included representatives from the “Endomicrobia,” Firmicutes, Proteobacteria, and Actinobacteria and were related to previously described bacteria from the intestines of other scarab larvae and termites. These universally distributed taxa have the potential to form vertically transmitted symbiotic associations with these insects.
Hierarchical ATPG for Analog Circuits and Systems

Automatic test-pattern generation (ATPG) algorithms for analog circuits have been under intense investigation for the last several years. As system design aggressively moves to system-on-a-chip (SoC) and core-based integration, hierarchical analog ATPG emerges as an even more difficult challenge. Attempts to develop an effective algorithm have had varying degrees of success. This article reviews some fundamental issues and recent work in hierarchical analog ATPG and presents an algorithm based on controllability and observability computation. This algorithm has been implemented in a prototype tool, and results based on several case studies show the application of the technique.
The Cytoplasmic Domain of Transferrin Receptor 2 Dictates Its Stability and Response to Holo-transferrin in Hep3B Cells*

Transferrin receptor 2 (TfR2) is a homolog of transferrin receptor 1 (TfR1), the receptor responsible for the uptake of iron-loaded transferrin (holo-Tf) into cells. Unlike the ubiquitous TfR1, TfR2 is predominantly expressed in the liver. Mutations in TfR2 gene cause a rare autosomal recessive form of the iron overload disease, hereditary hemochromatosis. Previous studies demonstrated that holo-Tf increases TfR2 levels by stabilizing TfR2 at the protein level. In this study we constructed two chimeras, one of which had the cytoplasmic domain of TfR2 and the remaining portion of TfR1 and the other with the cytoplasmic and transmembrane domain of TfR1 joined to the ectodomain of TfR2. Similar to TfR2, the levels of the chimera containing only the cytoplasmic domain of TfR2 increased in a time- and dose-dependent manner after the addition of holo-Tf to the medium. The half-life of the chimera increased 2.7-fold in cells exposed to holo-Tf like the endogenous TfR2 in HepG2 cells. Like TfR2 and unlike TfR1, the levels of the chimera did not respond to intracellular iron content. These results suggest that although holo-Tf binding to the ectodomain is necessary, the cytoplasmic domain of TfR2 is largely responsible for its stabilization by holo-Tf.
Frequency of lactase persistence genotype in a healthy Polish population

The majority of mammals are unable to digest lactose due to post-weaning deactivation of the LCT gene, which is responsible for encoding the enzyme lactase (i.e., adult-type hypolactasia). A substitution of C with T at position −13910 bp upstream of the LCT gene has been linked to the lactase persistence phenotype in European populations. We investigated the frequency of LCT-13910C>T polymorphism in 223 blood donors from central Poland. All samples were genotyped by polymerase chain reaction and direct sequencing. The LCT-13910 T allele (lactase persistence) was present in 51% of individuals sampled from the Polish population. We did not find any non-European variants associated with lactase persistence (LCT-13907C>G, LCT-13913T>C, LCT-13915T>G), or any new polymorphisms within the sequenced region. Allele frequencies obtained are in agreement with results from other countries and confirm the unique pattern of distribution of the LCT-13910C>T genotype in Europe.
Risk factors detection in chronic thromboembolic pulmonary hypertension, a tool for risk quantification?

BACKGROUND Chronic thromboembolic pulmonary hypertension (CTEPH) is characterized by chronic thromboembolic obstruction in the pulmonary bed. The definitive pathogenesis remains incompletely explained, although multiple risk factors of CTEPH have been identified. The purpose of the study was to evaluate the risk profile of patients with CTEPH and the representativeness of risk factors, identify possible new CTEPH risk factors and specify the epidemiology of CTEPH in our country. METHODS In 81 patients with CTEPH, well known risk factors were analyzed, and a detailed analysis of selected hematological parameters was investigated at a specialized hematology laboratory. RESULTS CTEPH risk factors were identified as follows: pulmonary embolism (PE), deep vein thrombosis (DVT), thyreopathy, blood type other than "0", inflammatory bowel disease, malignancy, splenectomy, pacemaker. When compared to healthy controls, the following was observed: a significant decrease in platelet count, higher mean platelet volume, higher spontaneous platelet aggregation, increase in von Willebrand factor and fibrinogen. The median of risk factors representativeness was 3 (PE, DVT, blood type other than "0"). The prevalence of CTEPH in adult population in our country is estimated to be 1.8 per 100,000 inhabitants. CONCLUSION In the study we confirmed multiple established risk factors of CTEPH, set their representativeness, identified some platelet abnormalities which could be a potential new risk marker and specified the prevalence of CTEPH (Tab. 5, Ref. 35).
Food restriction retards body growth and prevents end-stage renal pathology in remnant kidneys of rats regardless of protein intake.

The objectives of this study were to evaluate the effects of food restriction (without protein or phosphorus restriction) and protein restriction (without the restriction of other nutrients or calories) on the outcome of the remnant kidney model of chronic renal failure in rats. After 5/6 nephrectomy, rats were assigned to one of the following dietary groups: group I (control-ad libitum) consumed a 21% casein diet ad libitum; group II (food restriction with protein restriction) consumed 36% less calories, protein and minerals than group I; group III (food restriction without protein restriction) consumed 36% less calories and minerals than group I, but equivalent amounts of protein; group IV (protein restriction) consumed 38% less protein than group I, but equivalent amounts of calories and minerals; group V (NaCl restriction) consumed 40% less sodium chloride than group I, but equivalent amounts of all other nutrients. All groups consumed equivalent amounts of calcium, phosphorus and vitamins. Groups II and III experienced retardation of growth in comparison to groups I, IV and V. The food-restricted groups II and III, but not groups IV and V, had less proteinuria than group I 20 weeks postablation. By 21 weeks postablation, the kidneys from group I showed severe parenchymal damage, characteristic of end-stage renal pathology. These changes were prevented in the food-restricted groups II and III, but not in groups IV and V. The percentage of glomeruli with severe structural damage was less in groups II (27.3 +/- 8.8) and III (26.9 +/- 7.5) compared with group I (72.4 +/- 7.8). In contrast, the corresponding values in groups IV and V were not significantly different from group I. Interstitial volume (the percentage of tubulointerstitium which is interstitium) which was proportional to the severity of tubular damage was significantly lower in groups II (25.1 +/- 4.5) and III (20.4 +/- 2.8) when compared with groups I (48.1 +/- 3.0), IV (44.4 +/- 6.6), or V (41.9 +/- 4.2). An interstitial volume less than 30 correlated with well preserved renal histology, whereas a value greater than 40 was indicative of end-stage renal pathology. These results indicate that the restriction of carbohydrate, fat, and minerals (except for calcium and phosphorus) retarded growth and prevented the development of end-stage renal pathology in the remnant kidney model of chronic renal failure in rats, regardless of whether protein was restricted or not. (ABSTRACT TRUNCATED AT 400 WORDS)
Gene-expression and in vitro function of mesenchymal stromal cells are affected in juvenile myelomonocytic leukemia

An aberrant interaction between hematopoietic stem cells and mesenchymal stromal cells has been linked to disease and shown to contribute to the pathophysiology of hematologic malignancies in murine models. Juvenile myelomonocytic leukemia is an aggressive malignant disease affecting young infants. Here we investigated the impact of juvenile myelomonocytic leukemia on mesenchymal stromal cells. Mesenchymal stromal cells were expanded from bone marrow samples of patients at diagnosis (n=9) and after hematopoietic stem cell transplantation (n=7; from 5 patients) and from healthy children (n=10). Cells were characterized by phenotyping, differentiation, gene expression analysis (of controls and samples obtained at diagnosis) and in vitro functional studies assessing immunomodulation and hematopoietic support. Mesenchymal stromal cells from patients did not differ from controls in differentiation capacity nor did they differ in their capacity to support in vitro hematopoiesis. Deep-SAGE sequencing revealed differential mRNA expression in patient-derived samples, including genes encoding proteins involved in immunomodulation and cell-cell interaction. Selected gene expression normalized during remission after successful hematopoietic stem cell transplantation. Whereas natural killer cell activation and peripheral blood mononuclear cell proliferation were not differentially affected, the suppressive effect on monocyte to dendritic cell differentiation was increased by mesenchymal stromal cells obtained at diagnosis, but not at time of remission. This study shows that active juvenile myelomonocytic leukemia affects the immune response-related gene expression and function of mesenchymal stromal cells. In contrast, the differential gene expression of hematopoiesis-related genes could not be supported by functional data. Decreased immune surveillance might contribute to the therapy resistance and progression in juvenile myelomonocytic leukemia.
Diagnosis and Quantification of Cognitive Fatigue in Multiple Sclerosis

Objective: To standardize a method to measure cognitive fatigue in patients with multiple sclerosis (MS). Background: Many patients with MS complain of cognitive fatigue, defined as a decline in cognitive performance during a task requiring sustained activity. Until now there has not been a standardized way to detect cognitive fatigue or determine its severity. Methods: We administered the Paced Auditory Serial Addition Test (PASAT) to 130 normal controls and 100 randomly selected patients with MS, and compared the number of correct responses between the first third and last third of the test. Results: The controls averaged 2 more correct responses in the last third of the PASAT than in the first third. The patients with MS averaged 2 to 3 fewer correct responses in the last third than the first third. Conclusions: Our study showed that comparing responses between the first and last thirds of the PASAT is a reliable method to measure cognitive fatigue in patients with MS. We also present normative data to be used to determine whether patients with MS have cognitive fatigue.
Medical Science in the Twentieth Century †

I deem it a signal honour to have been asked to give this address during the celebration of the one hundred and fiftieth anniversary of your renowned Medical School, particularly as such emphasis is being given in your ceremonies to historical matters for, as you know, I have no claim whatever to be considered a medical historian. My only qualifications to talk on this matter are that I have spent nearly half of this century doing some sort of research related to medicine, and that I can claim to have great sympathy with those who study history, for I believe that some background of medical history is helpful in giving depth to current thought and that it is of great benefit to the student to know more than the bare bones of his subject. It is no doubt salutary to consider from time to time what our ancestors have done in their day and to examine the achievements of the present in the light of the past, for there is and perhaps always has been a tendency, especially among the young, to believe that all current knowledge was acquired in the last ten years or so. Such an examination is particularly relevant in this University for you are the proud possessors of one of the greatest of the medical historical libraries of the present day, and this no doubt colours thought in your Medical School. It is a great grief to us all that the mant who played so outstanding a part in the building up of this fine library, and who was the repository of so much learning freely put at the disposal of others, is not with us today. But we all think of him with affection and I am sure his work for your School will be valued and remembered for as long as this Library lasts. It is clear that the current of medical thought did not make any perceptible deviation from its course because the calendar suddenly changed from registering 1899 to registering 1900. We cannot therefore consider twentieth century medicine completely divorced from what had gone before, particularly in the nineteenth century. The great base on which the medical and surgical practice of the nineteenth century had been elaborated was laid by the careful correlation of the * Professor of Pathology.
Effects of age and speed of processing on rCBF correlates of syntactic processing in sentence comprehension

Positron emission tomography (PET) was used to determine the effect of age on regional cerebral blood flow (rCBF) during syntactic processing in sentence comprehension. PET activity associated with making plausibility judgments about syntactically more complex subject object (SO) sentences (e.g., The juice that the child spilled stained the rug) was compared to that associated with making judgments about synonymous syntactically simpler object subject (OS) sentences (e.g., The child spilled the juice that stained the rug). In the first study, 13 elderly (70–80‐year‐old) subjects showed increased rCBF in the left inferior parietal lobe. This result contrasted with previous studies, which have shown activation in Broca's area in this task in young subjects. Elderly subjects were noted to have longer reaction times than young subjects previously tested. A second study found that young subjects whose reaction times were as long as those of the elderly subjects tested in Experiment 1 activated left superior parietal, and not left inferior frontal, structures. A third experiment found that elderly subjects with reaction times as fast as previously tested young subjects activated left inferior frontal structures. The results suggest that the speed of syntactic processing, but not age per se is related to the neural location where one aspect of syntactic processing is carried out. Hum. Brain Mapping 19:112–131, 2003. © 2003 Wiley‐Liss, Inc.
Offline signature authenticity verification through unambiguously connected skeleton segments

A method for offline signature verification is presented in this paper. It is based on the segmentation of the signature skeleton (through standard image skeletonization) into unambiguous sequences of points, or unambiguously connected skeleton segments corresponding to vectorial representations of signature portions. These segments are assumed to be the fundamental carriers of useful information for authenticity verification, and are compactly encoded as sets of 9 scalars (4 sampled coordinates and 1 length measure). Thus signature authenticity is inferred through Euclidean distance based comparisons between pairs of such compact representations. The average performance of this method is evaluated through experiments with offline versions of signatures from the MCYT-100 database. For comparison purposes, three other approaches are applied to the same set of signatures, namely: (1) a straightforward approach based on Dynamic Time Warping distances between segments, (2) a published method by [shanker2007], also based on DTW, and (3) the average human performance under equivalent experimental protocol. Results suggest that if human performance is taken as a goal for automatic verification, then we should discard signature shape details to approach this goal. Moreover, our best result -- close to human performance -- was obtained by the simplest strategy, where equal weights were given to segment shape and length.
TRUNK MUSCLE ELECTROMYOGRAPHIC ACTIVITY WITH UNSTABLE AND UNILATERAL EXERCISES

The purpose of this cross-sectional study was to evaluate the effect of unstable and unilateral resistance exercises on trunk muscle activation. Eleven subjects (6 men and 5 women) between 20 and 45 years of age participated. Six trunk exercises, as well as unilateral and bilateral shoulder and chest presses against resistance, were performed on stable (bench) and unstable (Swiss ball) bases. Electromyo-graphic activity of the upper lumbar, lumbosacral erector spinae, and lower-abdominal muscles were monitored. Instability generated greater activation of the lower-abdominal stabilizer musculature (27.9%) with the trunk exercises and all trunk stabilizers (37.7–54.3%) with the chest press. There was no effect of instability on the shoulder press. Unilateral shoulder press produced greater activation of the back stabilizers, and unilateral chest press resulted in higher activation of all trunk stabilizers, when compared with bilateral presses. Regardless of stability, the superman exercise was the most effective trunk-stabilizer exercise for back-stabilizer activation, whereas the side bridge was the optimal exercise for lower-abdominal muscle activation. Thus, the most effective means for trunk strengthening should involve back or abdominal exercises with unstable bases. Furthermore, trunk strengthening can also occur when performing resistance exercises for the limbs, if the exercises are performed unilaterally.
Optimal Load for the Peak Power and Maximal Strength of the Upper Body in Brazilian Jiu-Jitsu Athletes

Abstract da Silva, BVC, de Moura Simim, MA, Marocolo, M, Franchini, E, and da Mota, GR. Optimal load for the peak power and maximal strength of the upper body in Brazilian Jiu-Jitsu athletes. J Strength Cond Res 29(6): 1616–1621, 2015—We determined the optimal load for the peak power output (PPO) during the bench press throw (BPT) in Brazilian Jiu-Jitsu (BJJ) athletes and compared the PPO and maximal strength between advanced (AD) and nonadvanced (NA) athletes. Twenty-eight BJJ athletes (24.8 ± 5.7 years) performed the BPT at loads of 30, 40, 50, and 60% of their 1 repetition maximum (RM) in a randomized order (5-minute rest between BPTs). The PPO was determined by measuring the barbell displacement by an accelerometer (Myotest). The absolute (F = 7.25; p < 0.001; effect size [ES] = 0.21) and relative intensities were different (F = 7.11; p < 0.001; ES = 0.21) between the AD and NA. There was also a group and intensity interaction effect (F = 2.79; p = 0.046; ES = 0.10), but the differences were centered around the AD group, which achieved higher values using 40% (p = 0.001) and 50% of the 1RM (p < 0.001) than the PPO with 60% of 1RM. The AD athletes presented with higher 1RM than NA (p ⩽ 0.05; ES = 1.0), but there was no difference (p > 0.05) in the PPO (30–60% 1RM). A polynomial adjustment indicated that the optimal load was ∼42% of 1RM for all groups and subgroups (R 2 from 0.82 to 0.99). Our results suggest that there can be (1RM) differences between AD and NA BJJ athletes; however, there is no difference in the muscle power between the AD and NA groups. Additionally, ∼42% of 1RM seems to be the optimal load for developing maximal power using the BPT for the BJJ athletes.
Adolescent bullying, cannabis use and emerging psychotic experiences: a longitudinal general population study

Background Using longitudinal and prospective measures of psychotic experiences during adolescence, we assessed the risk of developing psychosis in three groups showing low, increasing and elevated psychotic experiences associated with bullying by peers and cannabis use in a UK sample of adolescents. Method Data were collected by self-report from 1098 adolescents (mean age 13.6 years; 60.9% boys) at five separate time points, equally separated by 6 months, across a 24-month period. General growth mixture modelling identified three distinct trajectories of adolescents reporting psychotic experiences: elevated, increasing and low. Results Controlling for cannabis use, bullying by peers significantly predicted change in psychotic experiences between Time 2 and Time 5 in adolescents belonging to the increasing group. No effect was found for the elevated or low groups. Controlling for bullying, an earlier age of cannabis use and cannabis use more than twice significantly predicted change in psychotic experiences in adolescents belonging to the increasing group. Cannabis use at any age was significantly associated with subsequent change in psychotic experiences in the low group. Reverse causal associations were examined and there was no evidence for psychotic experiences at Time 1 predicting a subsequent change in cannabis use between Times 2 and 5 in any trajectory group. Conclusions Bullying by peers and cannabis use are associated with adolescents' reports of increasing psychotic experiences over time. Further research into the longitudinal development of psychosis in adolescence and the associated risk factors would allow for early intervention programmes to be targeted more precisely.
Empirical analysis and improvement of density based clustering algorithm in data streams

Data mining has gained much importance in the field of research these days. It makes perfect blend for analyzing data of any fields and provide decision based output. Data generation and storage these days are done at high speed. Non stationary systems play holistic role in providing such data. Availability of such data creates scope of analysis for researchers. Such data which are continuous, unbounded, fast are termed as stream data. Clustering is the best method for analysis of stream data. As labeling of data is not possible for streams so clustering may assist this process. Also framing clusters digs out the points which do not seem to be part of cluster thus assisting outlier detection also. Different kinds of clustering algorithm exists but density based method helps in detecting clusters of arbitrary shape which other algorithm does not do. We have discussed an approach and presented its result in comparison of existing algorithm in this paper.