Miracle-dz/UniFAR-FTUs huggingface dataset:
Terminal ileum of patients who underwent colonoscopy: endoscopic, histologic and clinical aspects.

CONTEXT For the diagnosis of the diseases which affect the terminal ileum, the colonoscopy allows macroscopic evaluation and the performing of biopsies. Studies with criteria for the endoscopic and histological characterization of this segment are scarce and there are still some doubts about the need of biopsies in patients with normal ileoscopy. OBJECTIVE Study the terminal ileum of patients who underwent colonoscopy considering: endoscopic and histological correlation; agreement between results of the initial histological evaluation and slides review, and the chance of subjects with normal ileoscopy with abdominal pain and/or chronic diarrhea to show histological alterations. METHODS In a prospective study, 111 patients who presented smooth mucosa without enanthema in the endoscopic exam of the terminal ileum were selected. Biopsies of the ileal mucosa of such patients were performed, being the slides routinely examined and reviewed afterwards. RESULTS The correlation between patients with normal ileoscopy and ileum with preserved histological architecture was of 99.1%. The agreement between initial histological evaluation and slides review calculated by the Kappa test was 0.21. In patients with abdominal pain and/or chronic diarrhea, the chance of showing histological alterations was 2.5 times higher than the others. CONCLUSIONS The correlation between endoscopic and histological findings was high. The agreement between the initial histologic evaluation and slides review was not satisfactory. The chance of subjects with normal ileoscopy with abdominal pain and/or chronic diarrhea, showing histological alterations was higher in relation to the asymptomatic ones or with other symptoms, although the clinical importance of this datum was not evaluated.
Characteristic visuomotor influences on eye-movement patterns to faces and other high level stimuli

Eye-movement patterns are often utilized in studies of visual perception as indices of the specific information extracted to efficiently process a given stimulus during a given task. Our prior work, however, revealed that not only the stimulus and task influence eye-movements, but that visuomotor (start position) factors also robustly and characteristically influence eye-movement patterns to faces (Arizpe et al., 2012). Here we manipulated lateral starting side and distance from the midline of face and line-symmetrical control (butterfly) stimuli in order to further investigate the nature and generality of such visuomotor influences. First we found that increasing starting distance from midline (4°, 8°, 12°, and 16° visual angle) strongly and proportionately increased the distance of the first ordinal fixation from midline. We did not find influences of starting distance on subsequent fixations, however, suggesting that eye-movement plans are not strongly affected by starting distance following an initial orienting fixation. Further, we replicated our prior effect of starting side (left, right) to induce a spatially contralateral tendency of fixations after the first ordinal fixation. However, we also established that these visuomotor influences did not depend upon the predictability of the location of the upcoming stimulus, and were present not only for face stimuli but also for our control stimulus category (butterflies). We found a correspondence in overall left-lateralized fixation tendency between faces and butterflies. Finally, for faces, we found a relationship between left starting side (right sided fixation pattern tendency) and increased recognition performance, which likely reflects a cortical right hemisphere (left visual hemifield) advantage for face perception. These results further indicate the importance of considering and controlling for visuomotor influences in the design, analysis, and interpretation of eye-movement studies.
Healthcare professional perceptions of family-centred rounds in French NICUs: a cross-sectional study

Objective To assess the perceptions of healthcare professionals (HCPs) regarding parental presence at medical rounds in French neonatal intensive care units (NICUs). We hypothesised that HCPs would perceive barriers against allowing parental participation in round discussions. Methods This cross-sectional study approached 304 HCPs from three groups; group 1: French professionals that attended an annual French-speaking meeting of the Neonatal Individualized Developmental Care and Assessment Program (NIDCAP); group 2: NICU professionals from a tertiary care academic hospital in western France; and group 3: paediatric residents from six French universities. We invited all HCPs to complete a questionnaire about medical round practices and their perceptions towards parent participation in family-centred rounds (FCRs). Results Of the 176 (58%) questionnaires returned, 159 were included in the analysis. The majority of medical rounds took place at the bedside for groups 1 and 3 (68%, 95% CI 54 to 80 and 71%, 95% CI 56 to 84, respectively) and in a conference room for group 2 (65%, 95% CI 51 to 78). Overall, respondents positively perceived FCR for themselves, parents and students. However, most respondents agreed with the following claims: ‘Parental attendance at medical rounds prevents some discussions between health professionals’ (66%, 95% CI 57 to 73), ‘FCR increases round durations’ (63%,95% CI 55 to 71) and ‘Some decisions made during medical rounds may be stressful for parents’ (51%, 95% CI 42 to 59). Nevertheless, responses varied significantly according to NIDCAP training and NICU experience and consequently group 1 displayed a significantly more positive attitude than other groups (p<0.001); they expressed less concern about potentially inhibiting discussions between HCPs (p<0.001), the feasibility (p=0.02) and prolonged round durations (p<0.001). Several difficulties and facilitators of FCR implementation were variously reported, but all groups agreed that routine workload was an important difficulty and that medical leadership would be an important facilitator. Conclusion French HCPs expressed rather positive perceptions towards parental presence in NICU rounds. However, some concerns need to be addressed.
Optical Coherence Tomography Technology and Quality Improvement Methods for Optical Coherence Tomography Images of Skin: A Short Review

Optical coherence tomography (OCT) delivers 3-dimensional images of tissue microstructures. Although OCT imaging offers a promising high-resolution method, OCT images experience some artifacts that lead to misapprehension of tissue structures. Speckle, intensity decay, and blurring are 3 major artifacts in OCT images. Speckle is due to the low coherent light source used in the configuration of OCT. Intensity decay is a deterioration of light with respect to depth, and blurring is the consequence of deficiencies of optical components. In this short review, we summarize some of the image enhancement algorithms for OCT images which address the abovementioned artifacts.
Improvements in memory function following anterior temporal lobe resection for epilepsy

Background: While up to a third of patients may experience a decline in memory following an anterior temporal lobe resection (ATL) for epilepsy, between 10 and 20% may experience a postoperative improvement in function. The aim of this study was to examine the preoperative characteristics of these patients. Methods: Logistic regression analyses were used to determine which variables influenced postoperative memory improvement following ATL on standardized memory tests in 237 patients with unilateral hippocampal sclerosis (105 right; 132 left). Results: A total of 22% of the right ATL and 9% of the left ATL group demonstrated a significant postoperative improvement in verbal learning. A total of 9% of the right ATL and 16% of the left ATL group demonstrated a significant postoperative improvement in visual learning. In the R ATL group, postoperative improvements in verbal learning were associated with poor preoperative verbal learning, a shorter duration of epilepsy, higher scores on the visual learning task, and an older age at the time of surgery. In the L ATL group, postoperative improvements in visual learning were associated with poor preoperative visual learning, a shorter duration of epilepsy, and a higher IQ. Postoperative improvements in memory functions associated with the ipsilateral temporal lobe were not associated with demographic or epilepsy-related variables. Conclusions: Memory deficits normally associated with the function of the contralateral temporal lobe in patients with unilateral hippocampal sclerosis may improve postoperatively in patients with a shorter duration of epilepsy and the cognitive capacity to develop compensatory strategies.
Analysis of the on-state resistance influenced by the on-state current

The performance of photoconductive semiconductor switches (PCSSs) has superiority, since it has ultrafast rise-time, low jitter, good synchronization and high electric-field strength. The on-state resistance is an important parameter of the PCSS performance. In this paper, a research about the influence of bias voltage and on-state current to the on-state resistance is described. From the results we got the relationship among the elements and the on-state resistance. The on-state resistance falls with the increase of the bias voltage and the on-state current. The results were discussed and explanations were given at last.
Time-varying contour topology

The contour tree has been used to compute the topology of isosurfaces, generate a minimal seed set for accelerated isosurface extraction, and provide a user interface to segment individual contour components in a scalar field. In this paper, we extend the benefits of the contour tree to time-varying data visualization. We define temporal correspondence of contour components and describe an algorithm to compute the correspondence information in time-dependent contour trees. A graph representing the topology changes of time-varying isosurfaces is constructed in real-time for any selected isovalue using the precomputed correspondence information. Quantitative properties, such as surface area and volume of contour components, are computed and labeled on the graph. This topology change graph helps users to detect significant topological and geometric changes in time-varying isosurfaces. The graph is also used as an interactive user interface to segment, track, and visualize the evolution of any selected contour components over time.
D-branes, B fields, and Ext groups

In this paper we extend previous work on calculating massless boundary Ramond sector spectra of open strings to include cases with nonzero flat B fields. In such cases, D-branes are no longer well-modelled precisely by sheaves, but rather they are replaced by `twisted' sheaves, reflecting the fact that gauge transformations of the B field act as affine translations of the Chan-Paton factors. As in previous work, we find that the massless boundary Ramond sector states are counted by Ext groups -- this time, Ext groups of twisted sheaves. As before, the computation of BRST cohomology relies on physically realizing some spectral sequences. Subtleties that cropped up in previous work also appear here.
Smartphone viruses propagation on heterogeneous composite networks

Smartphones are now targets of malicious viruses. Furthermore, the increasing “connectedness” of smartphones has resulted in new delivery vectors for malicious viruses, including proximity-, social- and other technology-based methods. In fact, Cabir and CommWarrior are two viruses-observed in the wild-that spread, at least in part, using proximity-based techniques (line-of-sight bluetooth radio). In this paper, we propose and evaluate SI1I2S a competition model that describes the spread of two mutually exclusive viruses across heterogeneous composite networks, one static (social connections) and one dynamic (mobility pattern). To approximate dynamic network behavior, we use classic mobility models from ad hoc networking, e.g., Random Waypoint, Random Walk and Levy Flight. We analyze our model using techniques from dynamic systems and find that the first eigenvalue of the system matrices λs1, λs2 of the two networks (static and dynamic networks) appropriately captures the competitive interplay between two viruses and effectively predicts the competition's “winner”, which provides a feasible way to defend against smartphone viruses.
Hierarchical versus degenerate 2HDM: The LHC run 1 legacy at the onset of run 2

Current discussions of the allowed two-Higgs-doublet model parameter space after LHC run 1 and the prospects for run 2 are commonly phrased in the context of a quasidegenerate spectrum for the new scalars. Here, we discuss the generic situation of a two-Higgs-doublet model with a nondegenerate spectrum for the new scalars. This is highly motivated from a cosmological perspective since it naturally leads to a strongly first-order electroweak phase transition that could explain the matter-antimatter asymmetry in the Universe. While constraints from measurements of Higgs signal strengths do not change, those from searches of new scalar states get modified dramatically once a nondegenerate spectrum is considered.
KatF (sigma S) synthesis in Escherichia coli is subject to posttranscriptional regulation

A transcriptional fusion of katF to the lacZ gene was expressed at increasingly higher levels throughout the exponential phase, but a translational fusion was expressed at low levels during exponential-phase growth and was induced 160-fold during the transition to stationary phase, implicating a posttranscriptional mechanism in the regulation of KatF synthesis. Mutational analyses suggested that the initiation codon of katF is the second ATG in the previously identified open reading frame.
Security and Privacy Challenges in Cognitive Wireless Sensor Networks

Wireless sensor networks (WSNs) have attracted a lot of interest in the research community due to their potential applicability in a wide range of real-world practical applications. However, due to the distributed nature and their deployments in critical applications without human interventions and sensitivity and criticality of data communicated, these networks are vulnerable to numerous security and privacy threats that can adversely affect their performance. These issues become even more critical in cognitive wireless sensor networks (CWSNs) in which the sensor nodes have the capabilities of changing their transmission and reception parameters according to the radio environment under which they operate in order to achieve reliable and efficient communication and optimum utilization of the network resources. This chapter presents a comprehensive discussion on the security and privacy issues in CWSNs by identifying various security threats in these networks and various defense mechanisms to counter these vulnerabilities. Various types of attacks on CWSNs are categorized under different classes based on their natures and targets, and corresponding to each attack class, appropriate security mechanisms are also discussed. Some critical research issues on security and privacy in CWSNs are also identified.
Interfractional renal and diaphragmatic position variation during radiotherapy in children and adults: is there a difference?

Abstract Background: Pediatric safety margins are generally based on data from adult studies; however, adult-based margins might be too large for children. The aim of this study was to quantify and compare interfractional organ position variation in children and adults. Material and methods: For 35 children and 35 adults treated with thoracic/abdominal irradiation, 850 (range 5–30 per patient) retrospectively collected cone beam CT images were registered to the reference CT that was used for radiation treatment planning purposes. Renal position variation was assessed in three orthogonal directions and summarized as 3D vector lengths. Diaphragmatic position variation was assessed in the cranio-caudal (CC) direction only. We calculated means and SDs to estimate group systematic (Σ) and random errors (σ) of organ position variation. Finally, we investigated possible correlations between organ position variation and patients’ height. Results: Interfractional organ position variation was different in children and adults. Median 3D right and left kidney vector lengths were significantly smaller in children than in adults (2.8, 2.9 mm vs. 5.6, 5.2 mm, respectively; p < .05). Generally, the pediatric Σ and σ were significantly smaller than in adults (p < .007). Overall and within both subgroups, organ position variation and patients’ height were only negligibly correlated. Conclusions: Interfractional renal and diaphragmatic position variation in children is smaller than in adults indicating that pediatric margins should be defined differently from adult margins. Underlying mechanisms and other components of geometrical uncertainties need further investigation to explain differences and to appropriately define pediatric safety margins.
Fast Benchmarking of Asynchronous Multi-Fidelity Optimization on Zero-Cost Benchmarks

While deep learning has celebrated many successes, its results often hinge on the meticulous selection of hyperparameters (HPs). However, the time-consuming nature of deep learning training makes HP optimization (HPO) a costly endeavor, slowing down the development of efficient HPO tools. While zero-cost benchmarks, which provide performance and runtime without actual training, offer a solution for non-parallel setups, they fall short in parallel setups as each worker must communicate its queried runtime to return its evaluation in the exact order. This work addresses this challenge by introducing a user-friendly Python package that facilitates efficient parallel HPO with zero-cost benchmarks. Our approach calculates the exact return order based on the information stored in file system, eliminating the need for long waiting times and enabling much faster HPO evaluations. We first verify the correctness of our approach through extensive testing and the experiments with 6 popular HPO libraries show its applicability to diverse libraries and its ability to achieve over 1000x speedup compared to a traditional approach. Our package can be installed via pip install mfhpo-simulator.
A Population Approach to Transportation Planning: Reducing Exposure to Motor-Vehicles

Transportation planning and public health have important historical roots. To address common challenges, including road traffic fatalities, integration of theories and methods from both disciplines is required. This paper presents an overview of Geoffrey Rose's strategy of preventive medicine applied to road traffic fatalities. One of the basic principles of Rose's strategy is that a large number of people exposed to a small risk can generate more cases than a small number exposed to a high risk. Thus, interventions should address the large number of people exposed to the fundamental causes of diseases. Exposure to moving vehicles could be considered a fundamental cause of road traffic deaths and injuries. A global reduction in the amount of kilometers driven would result in a reduction of the likelihood of collisions for all road users. Public health and transportation research must critically appraise their practice and engage in informed dialogue with the objective of improving mobility and productivity while simultaneously reducing the public health burden of road deaths and injuries.
Phase Transitions in Parallel Replication Process

The one-dimensional kinetic contact process with parallel update is introduced and studied by Monte Carlo simulations. This process is proposed to describe the plant population replication and epidemic disease spreading among them. The phase diagram of the model features the line of the second order transitions between absorbing and active phases. The numerical results for the critical index beta demonstrate its continuous variation along the transition line accompanied by the variations of the structural characteristics of limiting steady states. We conjecture the non-universality of the critical behavior of the model.
Characterization of Novel Microsatellite Loci for Primula poissonii (Primulaceae) Using High-Throughput Sequencing Technology

Primula poissonii (Primulaceae) is a perennial herb, widely distributed in the Hengduan Mountain region of Southwest China. In this study, Roche 454 pyrosequencing was used to isolate microsatellite markers. A total of 4528 unique sequences were identified from 68,070 unique reads. Of these, eighty-seven microsatellite loci were screened for utility using two criteria: successful PCR amplification and variation of these loci within three wild P. poissonii populations. Twenty loci were successfully amplified and exhibited polymorphic alleles. The number of observed alleles ranged from 1 to 9 with an average of 3.5. The observed and expected heterozygosities ranged from 0.087 to 1.000 and from 0.124 to 0.828, respectively. Among these SSR loci, only the P69 locus could not be cross-amplified successfully in two closely related species P. wilsonii and P. anisodora. The microsatellite loci developed in this study will be useful for studying genetic diversity and speciation events between P. poissonii and closely related Primula species.
The Automated Root Exudate System (ARES): a method to apply solutes at regular intervals to soils in the field

Root exudation is a key component of nutrient and carbon dynamics in terrestrial ecosystems. Exudation rates vary widely by plant species and environmental conditions, but our understanding of how root exudates affect soil functioning is incomplete, in part because there are few viable methods to manipulate root exudates in situ. To address this, we devised the Automated Root Exudate System (ARES), which simulates increased root exudation by applying small amounts of labile solutes at regular intervals in the field. The ARES is a gravity‐fed drip irrigation system comprising a reservoir bottle connected via a timer to a micro‐hose irrigation grid covering c. 1 m2; 24 drip‐tips are inserted into the soil to 4‐cm depth to apply solutions into the rooting zone. We installed two ARES subplots within existing litter removal and control plots in a temperate deciduous woodland. We applied either an artificial root exudate solution (RE) or a procedural control solution (CP) to each subplot for 1 min day−1 during two growing seasons. To investigate the influence of root exudation on soil carbon dynamics, we measured soil respiration monthly and soil microbial biomass at the end of each growing season. The ARES applied the solutions at a rate of c. 2 L m−2 week−1 without significantly increasing soil water content. The application of RE solution had a clear effect on soil carbon dynamics, but the response varied by litter treatment. Across two growing seasons, soil respiration was 25% higher in RE compared to CP subplots in the litter removal treatment, but not in the control plots. By contrast, we observed a significant increase in microbial biomass carbon (33%) and nitrogen (26%) in RE subplots in the control litter treatment. The ARES is an effective, low‐cost method to apply experimental solutions directly into the rooting zone in the field. The installation of the systems entails minimal disturbance to the soil and little maintenance is required. Although we used ARES to apply root exudate solution, the method can be used to apply many other treatments involving solute inputs at regular intervals in a wide range of ecosystems.