Miracle-dz/UniFAR-FTUs huggingface dataset:
The Effect of Dynamic Food Labels with Real-Time Feedback on Diet Quality: Results from a Randomized Controlled Trial

The rising prevalence of non-communicable diseases has brought attention to the importance of consuming a healthy diet. One strategy to improve diet quality is through front-of-pack (FOP) nutrition labels. Taking advantage of an online grocery store, we allowed consumers to choose the FOP labels they preferred, and combined this information with real-time feedback on the overall nutritional quality of the shopping basket. We hypothesized that these dynamic food labels with real-time feedback (DFLF) would improve nutritional quality of food purchases. This trial followed a two-arm (no-label control and DFLF) crossover design with 125 participants exposed to each condition once in random order via an online grocery store. A first difference regression model allowed for estimating the unbiased effect of the DFLF on diet quality, measured by the weighted average Nutri-Score (ranging 1 to 5) per serving (primary) and changes in select nutrients and calories. The mean weighted Nutri-Score was 0.4 (12.6%) higher in the DFLF arm (CI: [0.2, 0.6]) relative to the control. The DFLF also decreased the amount of sugar per serving by 0.9 g (CI: [−1.7, −0.0]) and total sugar per shop by 169.5 g (CI: [−284.5, −54.5]). The DFLF features significantly improved nutrition quality relative to no labelling, as measured by average Nutri-Score values. These results shed light on the considerable potential of the online shopping environment to improve diet quality through customization and real time feedback.
Fossil Sirenia of the West Atlantic and Caribbean Region. ix. Metaxytherium albifontanum, sp. nov.

ABSTRACT We describe a new species of the halitheriine dugongid genus Metaxytherium from the late Oligocene of Florida and South Carolina. The new species is represented by cranial and postcranial material, including parts of the axial and appendicular skeleton. Metaxytherium albifontanum, sp. nov., differs from other species of Metaxytherium by the following unique combination of plesiomorphic and derived characters: posterior end of nasal process of premaxilla broad and flat relative to what is observed in most other members of the genus (somewhat resembling M. subapenninum); ventral extremity of jugal under posterior edge of orbit (character 85[1]) (shared with M. krahuletzi); exoccipitals separated in dorsal midline (character 66[1]) (shared with all other species in the genus, except some M. krahuletzi); and innominate with acetabulum (nearly lost or lost in M. crataegense, M. floridanum, M. serresii). This new species was sympatric with two dugongines, Crenatosiren olseni and Dioplotherium manigaulti. The small tusks and cranial morphology of M. albifontanum, sp. nov., indicate that it was likely a consumer of small seagrasses. Our phylogenetic analysis is consistent with previous ones in placing Hydrodamalinae within a paraphyletic Metaxytherium spp. and placing the Metaxytherium spp. + Hydrodamalinae clade as the sister group to Dugonginae. Metaxytherium albifontanum, sp. nov., is the oldest known member of its genus; this might indicate that the group originated in the West Atlantic and Caribbean region and later dispersed to the Old World Tethys region.
2‐Hydroxypropyl‐β‐cyclodextrin reduces retinal cholesterol in wild‐type and Cyp27a1−/−Cyp46a1−/− mice with deficiency in the oxysterol production

2‐Hydroxypropyl‐β‐cyclodextrin (HPCD) is an FDA approved vehicle for drug delivery and an efficient cholesterol‐lowering agent. HPCD was proposed to lower tissue cholesterol via multiple mechanisms including those mediated by oxysterols. CYP27A1 and CYP46A1 are the major oxysterol‐producing enzymes in the retina that convert cholesterol to 27‐ and 24‐hydroxycholesterol, respectively. We investigated whether HPCD treatments affected the retina of wild‐type and Cyp27a1−/−Cyp46a1−/− mice that do not produce the major retinal oxysterols.
To hatch or not to hatch? Egg hatch response to larval density and to larval contact in a treehole mosquito

Abstract. 1 We investigated the effect on egg hatch of exposure to: (1) varying larval density, and (2) larval contact in Aedes triseriatus Say (Diptera: Culicidae). For 2 days in the laboratory we submerged eggs into a treehole water medium containing 0 (control), 4, 12 or 24 larvae that could either contact the eggs directly or were separated from them by a screen. Following treatment, abundance of microorganisms on the egg surfaces, a food source for newly hatched larvae and a proposed hatching stimulus, was assessed by counts made from serial dilutions of samples. 2 We discovered a complex hatching response to larval contact and to larval density, and an interaction between these two factors in their effect on microbial growth. Hatching was inhibited in the 0‐larva control, even though microorganisms grew abundantly on the eggs. Hatch rate, as well as microbial counts, were high for eggs in direct contact with 4 larvae. As density increased in the larval contact treatment, microorganisms disappeared from the egg surfaces and hatch rate declined. 3 When protected from larval grazing, eggs supported numerous microbial colonies irrespective of larval density. In contrast to the contact treatment group, egg hatch increased with increasing larval density. These observations suggest that the combination of microbial growth and a larval factor stimulates hatch. This hatching response may have evolved because both abundant microorganisms and numerous larvae reflect a habitat of good quality.
LDL, LDL receptors, and PCSK9 as modulators of the risk for type 2 diabetes: a focus on white adipose tissue

Type 2 diabetes (T2D) and cardiovascular disease (CVD) share many risk factors such as obesity, unhealthy lifestyle, and metabolic syndrome, whose accumulation over years leads to disease onset. However, while lowering plasma low-density lipoprotein cholesterol (LDLC) is cardio-protective, novel evidence have recognised a role for common LDLC-lowering variants (e.g. in HMGCR, PCSK9, and LDLR) and widely used hypocholesterolemic drugs that mimic the effects of some of these variants (statins) in higher risk for T2D. As these conditions decrease plasma LDLC by increasing tissue-uptake of LDL, a role for LDL receptor (LDLR) pathway was proposed. While underlying mechanisms remain to be fully elucidated, work from our lab reported that native LDL directly provoke the dysfunction of human white adipose tissue (WAT) and the activation of WAT NLRP3 (Nucleotide-binding domain and Leucine-rich repeat Receptor, containing a Pyrin domain 3) inflammasome, which play a major role in the etiology of T2D. However, while elevated plasma numbers of apolipoprotein B (apoB)-containing lipoproteins (measured as apoB, mostly as LDL) is associated with WAT dysfunction and related risk factors for T2D in our cohort, this relation was strengthened in regression analysis by lower plasma proprotein convertase subtilisin/kexin type 9 (PCSK9). This supports a central role for upregulated pathway of LDLR and/or other receptors regulated by PCSK9 such as cluster of differentiation 36 (CD36) in LDL-induced anomalies. Targeting receptor-mediated uptake of LDL into WAT may reduce WAT inflammation, WAT dysfunction, and related risk for T2D without increasing the risk for CVD.
Heterologous structure of coating antigen on sensitivity of ELISA for sulfamethazine: evidence from molecular similarity analysis

Abstract Six structurally similar sulfonamide haptens have been linked to ovalbumin by diazo-method used as coating antigen. An enzyme-linked immunosorbent assay (ELISA) was developed to investigate heterologous structure of coating haptens on sensitivity of ELISA for sulfamethazine. The sensitivities of ELISA, expressed as IC50 values, ranged from 94 to 877 ng mL− 1 when six coating antigens were employed. The results suggested that the structural heterology of coating hapten had significant effect on ELISA sensitivity. In order to evaluate the relationship between the degree of hapten heterology and ELISA sensitivity, we used molecular similarity methods to qualitatively represent the degree of coating hapten heterology. The Molecular Access System (MACCS) structural keys and the Tanimoto similarity coefficient were used to calculate and compare the degree of coating hapten's similarity, and the authors found that the sensitivity of ELISA was not in direct proportion with degree of coating hapten heterology in the case of study.
Annual Changes in Germinal Epithelium Determine Male Reproductive Classes of the Cobia

Five reproductive classes of cobia Rachycentron canadum, caught along the Gulf of Mexico and the south-east Atlantic coast of the U.S.A. , are described during the annual reproductive cycle. These are based upon changes in the testicular germinal epithelium and the stages of germ cells that are present: early maturation, mid maturation, late maturation, regression and regressed. During early maturation, the germinal epithelium is continuous from the testicular ducts to the periphery of the testis and active spermatogenesis occurs throughout the testis. In mid maturation, the germinal epithelium near the ducts becomes discontinuous, but it remains continuous distally. In late maturation, a discontinuous germinal epithelium extends all along the lobules to the testicular periphery; lobules are swollen with sperm and there is minimal spermatogenesis. The regression class is characterized by a discontinuous epithelium throughout the testis, sperm storage and widely scattered spermatocysts. Spermatogonial proliferation also occurs along the lobule walls and at the periphery of the testis. In regressed testes, spermatogonia exist only in a continuous or discontinuous germinal epithelium, although residual sperm are nearly always present in the lobules and ducts. The presence or absence of sperm is not an accurate indicator of reproductive classes. At the periphery of the testis in the regression and regressed classes, the distal portions of lobules elongate as cords of cells containing spermatogonia and Sertoli cells. All reproductive classes can be identified in paraffin sections, although plastic sections provide better resolution. Using maturation classes defined by changes in the germinal epithelium to describe testicular development and spermatogenesis gives a more accurate picture than does using the traditional terminology.
No signs of meristem senescence in old Scots pine

Ageing and senescence in plants remain poorly understood. Although meristem totipotency may allow woody perennials to be immortal, relative growth and photosynthetic rates typically decline with age. Trees of ages between 129 and 534 years were selected in one of the oldest extant populations of Scots pine. Apical branches were propagated by grafting onto homogeneous juvenile rootstock to eliminate the effects of size and environmental variability and isolate those due to age. The hormonal profile of leaves and seeds along with markers of the physiological status of leaves and their pattern of DNA cytosine methylation were measured 15 years after grafting. The percentage of total methylated loci in nuclear DNA increased with increasing meristematic age. However, only very few significant relationships were found between levels of phyto‐hormones, pigments or physiological markers either in leaves or seeds and age of the meristem. In addition, shoots grafted from old trees grew as fast as those from younger trees and produced the same number of germinable seeds. Synthesis. We conclude that changes in DNA methylation can occur in old trees. The lack of apparent physiological deterioration in the grafted plants suggests that meristem senescence is not the main factor triggering whole‐plant ageing in Scots pine.
COVID-19-like symptoms observed in Chinese tree shrews infected with SARS-CoV-2

The coronavirus disease 2019 (COVID-19) pandemic continues to pose a global threat to the human population. Identifying animal species susceptible to infection with the SARS-CoV-2/ HCoV-19 pathogen is essential for controlling the outbreak and for testing valid prophylactics or therapeutics based on animal model studies. Here, different aged Chinese tree shrews (adult group, 1 year old; old group, 5–6 years old), which are close relatives to primates, were infected with SARS-CoV-2. X-ray, viral shedding, laboratory, and histological analyses were performed on different days post-inoculation (dpi). Results showed that Chinese tree shrews could be infected by SARS-CoV-2. Lung infiltrates were visible in X-ray radiographs in most infected animals. Viral RNA was consistently detected in lung tissues from infected animals at 3, 5, and 7 dpi, along with alterations in related parameters from routine blood tests and serum biochemistry, including increased levels of aspartate aminotransferase (AST) and blood urea nitrogen (BUN). Histological analysis of lung tissues from animals at 3 dpi (adult group) and 7 dpi (old group) showed thickened alveolar septa and interstitial hemorrhage. Several differences were found between the two different aged groups in regard to viral shedding peak. Our results indicate that Chinese tree shrews have the potential to be used as animal models for SARS-CoV-2 infection.
Subcellular compartmentation and remobilization of nitrate in barley.

The work described in this thesis investigated the remobilization of vacuolar stored nitrate in barley, when external nitrate supply was removed after an initial 24 h loading period with 10 mM nitrate. An integrated experimental approach was used which combined whole tissue analysis with measurements made at the cellular level using nitrate selective microelectrodes. Whole tissue analysis for nitrate and measurements of growth rate showed that relative growth rate and shoot : root ratios were maintained for 3-4 days after removal of external nitrate, although root tissue nitrate concentration was decreased to 57 % of initial levels after 24 h and to 29 % after three days without external nitrate supply. Nitrate selective microelectrode measurements recorded in the cytoplasm and vacuole of root epidermal and cortical cells over 24 h after removal of external nitrate showed that cytoplasmic nitrate concentration was maintained over this time at approximately 4-5 mM. Initial vacuolar concentrations were approximately 40 mM for epidermal cells and 68 mM cortical cells. Nitrate was remobilized from the vacuoles of both cell types at the same rate over the 24 h after external nitrate removal (± 1 mM h'*). Measurements of nitrate efflux under these conditions showed that efflux accounted for approximately 4.5 mM nitrate, lost over the first 6 h after removal of external nitrate, after which no detectable nitrate efflux occurred. Measurement of in vitro nitrate reductase activity (NRA) and translocation showed that NRA was maintained in both roots and shoots over 24 h after external nitrate removal, while translocation of nitrate to the shoot was reduced to 28 % of the initial translocation rate measured after 24 h of nitrate supply. The results were combined to develop a model for vacuolar nitrate remobilization in the roots, which suggests that the main function of vacuolar nitrate is to maintain cytosolic nitrate homeostasis and thus the "nitrate induced" state of barley roots during short periods of nitrate deprivation. Chapter 1: General Introduction
Ontogenetic Shifts in Sexual Dimorphism and Female Reproduction in the Reeves's Butterfly Lizard Leiolepis reevesii from Hainan, China

Abstract We studied ontogenetic shifts in sexual dimorphism and female reproduction in the Reeves's Butterfly Lizard, Leiolepis reevesii (Agamidae), from Hainan, southern China. The smallest reproductive female was 84 mm snout–vent length (SVL). The largest female and male were 136 mm and 166 mm SVL, respectively. Sexual dimorphism in head size and tail size was evident in adults, with adult males having larger heads and longer tails than did adult females of the same SVL. Head size relative to SVL was greatest in hatchlings and smallest in adults, with juveniles in between. Tail length relative to SVL was shorter in hatchlings than in juveniles and adults but did not differ between juveniles and adults. Females produced a single clutch of 2–8 eggs per breeding season stretching from mid-April to mid-July. Clutch size, egg mass, and clutch mass were all positively related to female SVL. Egg mass was negatively correlated with clutch size when holding female SVL constant, and egg length was negatively correlated with egg width when holding egg mass constant. Larger females increased reproductive output primarily through production of more and larger eggs (and hence heavier clutches). Males are the larger sex in L. reevesii presumably because (1) the selective pressure toward increased male size is strong; (2) the selective pressure toward increased female size is comparatively low; and (3) somatic growth is more likely to be constrained by reproduction in smaller females because of a negative correlation between relative clutch mass and SVL.
The biology and ecology of lotic rotifers and gastrotrichs

SUMMARY 1. The occurrence of Rotifera and Gastrotricha in the meiobenthos of lotic habitats is reviewed. About 150 rotifer and 30 gastrotrich species are reported in such habitats worldwide. 2. The two phyla share some morphological and biological features that might account for their presence in the meiofauna. Small-size, a soft and elongate body, adhesive glands on the posterior body end, movement through cilia, relatively short life cycles, parthenogenesis and dormant stages are common characteristics. 3. Most species of both taxa inhabiting the superficial sediments in streams and rivers may move downward into the hyporheos in response to both biotic (predation) and abiotic (spates, erosion, desiccation) disturbances.
Heterosis and the Evolution of Duplications

Single locus heterosis affords a sufficient drive for the incorporation of a newly arisen duplication into a species gene pool. Heterosis is here assumed to result from the formation of heterodimers between polypeptides specified by alleles. In consequence, the normal homologue of the duplication-bearing chromosome is eliminated rapidly unless the product of the locus is regulated in amount and recombination occurs so infrequently as to approximate mutation rates. In the latter case, the duplication comes to a frequency that is the higher, the fewer alleles initially present. This frequency would then continue until the slower processes such as mutation or recombination between adjacent cistrons permit a renewed climb to fixation. The allele included in the duplication will be lost at the original site unless the original number of alleles is low and it forms homozygotes of fitness nearly equal to the heterozygote. In general, segregation would be expected to continue for at least two alleles in nearly equal proportions at the original site. Recombination above a certain minimal value delays the attainment of selective equilibrium. This mechanism would be operative in haploid species as well, although heterosis-maintained segregation would of course not provide either initial or final polymorphism. Although only an arbitrarily simple model was investigated thoroughly, the general conclusions appear unperturbed by various relaxations of the restrictions built into it. Further diversification at the duplication site would be expected to follow its fixation.
The opportunity for outcrossing varies across the geographic range of the primarily selfing Clarkia xantiana ssp. parviflora.

PREMISE The timing of self-fertilization has potentially important consequences for the trajectory of mating system evolution, the opportunity for outcrossing, and the maintenance of genetic variation in populations. For primarily selfing taxa, it remains poorly understood as to how floral variation influences the opportunity for outcrossing and whether those attributes vary among populations across geographic ranges. METHODS We examined variation in floral traits (herkogamy, protandry, flower size, stigma stage at anthesis, timing of stigma receptivity) in seven populations of Clarkia xantiana ssp. parviflora, a primarily selfing taxon, spanning from the western to eastern margins of its distribution. We also performed experimental emasculations and pollinations (followed by stigma severing) to quantify the extent of opportunities for outcrossing across flower development. RESULTS There was marked among-population variation in all floral traits, particularly between far eastern and western populations. Emasculation experiments showed that the eastern populations had minimal autonomous selfing, but western populations had high rates of selfing within 24 h after anthesis. Population variation in autofertility was significantly predicted by floral trait variation, especially protandry and petal size. CONCLUSIONS Greater protandry both extended the time over which outcrossing could potentially occur and reduced the probability of autonomous selfing, suggesting that there may be a tradeoff that results in fitness loss when pollinator visits are not common. The east-west pattern of differentiation in some floral traits parallels that of postglacial range expansion, suggesting that selection on the mating system may have been strong in the process of range expansion.
P14ARF: The Absence that Makes the Difference

P14ARF is a tumor suppressor encoded by the CDKN2a locus that is frequently inactivated in human tumors. P14ARF protein quenches oncogene stimuli by inhibiting cell cycle progression and inducing apoptosis. P14ARF functions can be played through interactions with several proteins. However, the majority of its activities are notoriously mediated by the p53 protein. Interestingly, recent studies suggest a new role of p14ARF in the maintenance of chromosome stability. Here, we deepened this new facet of p14ARF which we believe is relevant to its tumor suppressive role in the cell. To this aim, we generated a monoclonal HCT116 cell line expressing the p14ARF cDNA cloned in the piggyback vector and then induced aneuploidy by treating HCT116 cells with the CENP-E inhibitor GSK923295. P14ARF ectopic re-expression restored the near-diploid phenotype of HCT116 cells, confirming that p14ARF counteracts aneuploid cell generation/proliferation.