Miracle-dz/UniFAR-FTUs huggingface dataset:
Ultrasound-guided percutaneous nephrolithotomy without indwelling ureteral catheter in older adults with upper urinary calculi: A retrospective study

Retention of ureteral catheter to establish artificial hydronephrosis is a routine step of percutaneous nephrolithotomy procedure, which can improve the success rate of puncture, but it can prolong the procedure time and increase the risk of postoperative infection, especially for immunocompromised elderly patients. Therefore, this study aims to investigate the safety and effectiveness of ultrasound-guided percutaneous nephrolithotomy without indwelling ureteral catheter for older patients with upper urinary calculi. The clinical data of 119 older patients admitted to the Affiliated Hospital of Jining Medical University for percutaneous nephrolithotomy from January 2019 to December 2021 were retrospectively analyzed. The patients were divided into study and control groups according to whether the physician decided to use ureteral catheter during the procedure, and the differences in the success rate of one-time puncture, operative time, single-stage stone removal rate, postoperative hospital stay, and complication rate were compared between the 2 groups. There were no significant differences in the success rate of one-time puncture and single-stage stone removal rate between the 2 groups (P > .05). The operation time were significantly shorter in the study group [(30.0–61.0) minute vs (54.8–106.8) minute, P = . 00], and the intraoperative bleeding was less in the study group [(5–20) mL vs (10–30) mL, P = . 03]. The postoperative hospital stay was shorter in the study group [(2.5–4.0) days vs (3.0–5.0) days, P = . 00], and the medical expenses were lower in the study group [(17,309.5–22,652.7) yuan vs (19,148.0–24,407.6) yuan, P = . 02]. The incidence of systemic inflammatory response syndrome was lower in the study group (3.5% vs 19.4%, P = .007). There were no statistically significant differences in complications such as postoperative fever, renal artery embolism and blood transfusion between the two groups (P > .05). Ultrasound-guided percutaneous nephrolithotomy without indwelling ureteral catheter for elderly patients with upper urinary stones is safe and feasible.
Clinical relevance of the blanking period on late recurrence after catheter ablation of atrial fibrillation

Recurrence of atrial fibrillation (AF) within the blanking period after catheter ablation (CA) is traditionally classified as a transient and benign event. However, recent findings suggest that early recurrence (ER) is associated with late recurrence (LR), challenging the predefined “blanking period”. We aimed to determine the clinical and procedural predictors of ER and LR after CA and establish the risk of LR in patients who experience ER.
The role of second‐order radial density gradient for helicon power absorption

To demonstrate the mysterious and still controversial mechanism of high ionization efficiency during helicon discharges, this work focuses particularly on the role of second‐order radial density gradient (SRDG) in helicon power absorption, both analytical and numerical. It was found that the positive or negative sign of SRDG and radial location of vanishing SRDG determine the radial profile of power absorption remarkably. First, by measuring SRDG at two radial locations (near plasma core and edge) where power absorption usually peaks, and varying it as a function of free parameter, we see that: (a) the power absorption from the antenna to plasma increases for positive SRDG and decreases for negative SRDG when viewed in the same x‐coordinate direction of SRDG and (b) the power absorption is maximized near the position where this local SRDG vanishes, consistent with the theory of radially localized helicon mode (B. N. Breizman and A. V. Arefiev, Phys. Rev. Lett., 84:3863, 2000). Second, by choosing the whole radial profiles of typical plasma distribution that have zero‐crossing SRDG, we find that the power absorption redistributes significantly when the location of vanishing SRDG moves radially outwards, and specifically when the radial locations of maximum power absorption and vanishing SRDG move in the same direction near the plasma core but noticeably in the opposite direction near the plasma edge. These findings are very interesting for helicon plasma applications that require certain power distribution or heat flux configuration, for example, material processing, which can be controlled by adjusting the radial profile of SRDG, especially the zero‐crossing SRDG.
Thumbs up or thumbs down: neural processing of social feedback and links to social motivation in adolescent girls

Abstract Adolescence is a period of rapid biological and psychological development, characterized by increasing emotional reactivity and risk-taking, especially in peer contexts. Theories of adolescent neural development suggest that the balance in sensitivity across neural threat, reward and regulatory systems contributes to these changes. Building on previous research, this study used a novel social feedback task to explore activation and functional connectivity in the context of social threat and reward in a sample of mid-adolescent girls (n = 86, Mage = 16.32). When receiving negative peer feedback, adolescents showed elevated activation in, and amygdala connectivity with, social processing regions [e.g. medial prefrontal cortex (mPFC) and temporoparietal junction (TPJ)]. When receiving positive feedback, adolescents showed elevated activation in social and reward (e.g. mPFC and ventromedial prefrontal cortex) processing regions and less striatum-cerebellum connectivity. To understand the psychological implications of neural activation and co-activation, we examined associations between neural processing of threat and reward and self-reported social goals. Avoidance goals predicted elevated amygdala and striatum connectivity with social processing regions [e.g. medial temporal gyrus (MTG)], whereas approach goals predicted deactivation in social processing regions (e.g. MTG/TPJ and precuneus), highlighting the importance of considering individual differences in sensitivity to social threat and reward in adolescence.
The ALF (Algorithms for Lattice Fermions) project release 2.0. Documentation for the auxiliary-field quantum Monte Carlo code

The Algorithms for Lattice Fermions package provides a general code for the finite-temperature and projective auxiliary-field quantum Monte Carlo algorithm. The code is engineered to be able to simulate any model that can be written in terms of sums of single-body operators, of squares of single-body operators and single-body operators coupled to a bosonic field with given dynamics. The package includes five predefined model classes: SU(N) Kondo, SU(N) Hubbard, SU(N) t-V and SU(N) models with long range Coulomb repulsion on honeycomb, square and N-leg lattices, as well as Z_2Z2 unconstrained lattice gauge theories coupled to fermionic and Z_2Z2 matter. An implementation of the stochastic Maximum Entropy method is also provided. One can download the code from our Git instance at https://git.physik. uni-wuerzburg.de/ALF/ALF/-/tree/ALF-2.0 and sign in to file issues.
The prevalence of constipation in end-stage kidney disease patients: A cross-sectional observation study

The aim of our study was to determine the prevalence, distribution, and risk factors for constipation in peritoneal dialysis (PD) and hemodialysis (HD) patients in our center. In this cross-sectional study, 858 dialysis patients over 18 years of age (681 HD cases and 177 PD cases from our hospital) were enrolled. A constipation assessment scale (CAS) questionnaire was used to evaluate constipation status. Logistic regression analysis was performed to define independent risk factors for CAS scores. The prevalence of constipation in HD and PD patients was 52.7% and 77.4%, respectively. The mean CAS score in HD and PD patients was 1.73 ± 2.31 and 2.42 ± 2.34, respectively. Age ≥ 65 and diabetic kidney disease for renal failure were independent risk factors associated with constipation in the HD population (OR = 1.67, 95% CI: 1.15–2.90, P = .019; OR = 3.31, 95% CI: 1.65–6.11, P < .001, respectively). In the PD population, only serum prealbumin was independently associated with constipation (OR = 0.88, 95% CI: 0.79–0.96, P = .007). The multivariable logistic regression analysis demonstrated that PD modality, age ≥ 65 and diabetic kidney disease for renal failure were independent risk factors for constipation (OR = 2.15, 95% CI: 1.41–3.32, P < .001; OR = 1.65, 95% CI: 1.13–2.33, P = .003; OR = 3.19, 95% CI: 1.76–5.093, P < .001, respectively). The prevalence of constipation in PD patients was higher than that in HD patients in our center. PD modality for renal replacement therapy, age ≥ 65 and diabetic kidney disease for renal failure were closely associated with constipation in dialysis patients.
A unique case of commensalism: The beaver beetle Platypsyllus castoris (Leiodidae, Coleoptera) and its morphological adaptations

Platypsyllus castoris is closely associated with beavers and displays a unique set of structural specializations. We document the morphology of adults with modern techniques, and interpret evolutionary changes linked with the specific life style. The small subfamily Platypsyllinae has evolved an entire suite of features correlated with a more or less close association with mammals, for instance a flattened body, a dorsal cephalic shield, flightlessness, eye reduction, and depigmentation. Within this small group, Platypsyllus displays numerous autapomorphic features, correlated with a close association with the beaver. Essential is a combination of mechanical stabilization and firm anchorage on the host, and efficient forward movement in the fur. Exo‐ and endoskeletal structures of the head and thorax are reinforced by vertical cuticular columns and by an array of internal ridges. The antennae are shortened and strongly modified, the mandibles distinctly reduced and flattened, unsuitable for cutting, scraping or grinding. The musculature of the mouthparts is simplified, whereas an enhanced set of prepharyngeal and pharyngeal dilators forms an efficient sucking pump. The prothoracic musculature is strongly developed. In contrast, the pterothoracic muscle system is distinctly simplified, even though leg muscles are strongly developed. Using the legs, the flattened beetles move sideways through the dense fur of the beaver, using posteriorly directed groups of setae and ctenidia to prevent being pushed backwards by the densely arranged hairs. In contrast to the anterior body, the cuticle of the abdomen is thin, and the entire tagma flexible, with thin layers of segmental muscles. The hind gut is not connected with the mid gut. The beetles probably consume liquid, possibly with emulgated minute skin debris. As the morphology of the mouthparts excludes damage to the skin of the host, the association should not be addressed as ectoparasitic but as commensalism.
Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures

Salmonella enterica serovar Typhimurium is a pathogen involved in human nontyphoidal infections. Treating S. ABSTRACT Establishing transcriptional regulatory networks (TRNs) in bacteria has been limited to well-characterized model strains. Using machine learning methods, we established the transcriptional regulatory networks of six Salmonella enterica serovar Typhimurium strains from their transcriptomes. By decomposing a compendia of RNA sequencing (RNA-seq) data with independent component analysis, we obtained 400 independently modulated sets of genes, called iModulons. We (i) performed pan-genome analysis of the phylogroup structure of S. Typhimurium and analyzed the iModulons against this background, (ii) revealed different genetic signatures in pathogenicity islands that explained phenotypes, (iii) discovered three transport iModulons linked to antibiotic resistance, (iv) described concerted responses to cationic antimicrobial peptides, and (v) uncovered new regulons. Thus, by combining pan-genome and transcriptomic analytics, we revealed variations in TRNs across six strains of serovar Typhimurium. IMPORTANCE Salmonella enterica serovar Typhimurium is a pathogen involved in human nontyphoidal infections. Treating S. Typhimurium infections is difficult due to the species’s dynamic adaptation to its environment, which is dictated by a complex transcriptional regulatory network (TRN) that is different across strains. In this study, we describe the use of independent component analysis to characterize the differential TRNs across the S. Typhimurium pan-genome using a compendium of high-quality RNA-seq data. This approach provided unprecedented insights into the differences between regulation of key cellular functions and pathogenicity in the different strains. The study provides an impetus to initiate a large-scale effort to reveal the TRN differences between the major phylogroups of the pathogenic bacteria, which could fundamentally impact personalizing treatments of bacterial pathogens.
Simulations of AGN jets: magnetic kink instability versus conical shocks

Relativistic jets in active galactic nuclei (AGN) convert as much as half of their energy into radiation. To explore the poorly understood processes that are responsible for this conversion, we carry out fully 3D magnetohydrodynamic (MHD) simulations of relativistic magnetized jets. Unlike the standard approach of injecting the jets at large radii, our simulated jets self-consistently form at the source and propagate and accelerate outward for several orders of magnitude in distance before they interact with the ambient medium. We find that this interaction can trigger strong energy dissipation of two kinds inside the jets, depending on the properties of the ambient medium. Those jets that form in a new outburst and drill a fresh hole through the ambient medium fall victim to a 3D magnetic kink instability and dissipate their energy primarily through magnetic reconnection in the current sheets formed by the instability. On the other hand, those jets that form during repeated cycles of AGN activity and escape through a pre-existing hole in the ambient medium maintain their stability and dissipate their energy primarily at MHD recollimation shocks. In both cases the dissipation region can be associated with a change in the density profile of the ambient gas. The Bondi radius in AGN jets serves as such a location.
Modeled Temperature-dependent Clouds with Radiative Feedback in Hot Jupiter Atmospheres

Using a general circulation model with newly implemented cloud modeling, we investigate how radiative feedback can self-consistently shape condensate cloud distributions, temperatures, and fluxes in a hot Jupiter atmosphere. We apply a physically motivated but simple parameterization of condensate clouds in which the temperature determines the cloud distribution, and we evaluate how different assumptions of vertical mixing and aerosol opacity affect predictions. We compare results from cases in which the aerosols are simply included in the last step of the simulation (i.e., postprocessed) to cases in which clouds and their radiative feedback are actively included throughout the duration of the simulation. When clouds and radiative feedback were actively included, cloud cover decreased at equatorial regions and increased toward the poles relative to the postprocessed solutions. The resulting phase curves also differed between the two approaches; the postprocessed cloud simulations predicted weaker day–night contrasts in emission and greater eastward shifts in the maximum emission compared to the active cloud modeling. This illustrates the importance of cloud radiative feedback and shows that postprocessing can provide inaccurate solutions when clouds are thick enough to provide significant scattering.
Trigonometric distance and proper motions of H2O maser bowshocks in AFGL 5142

We present the results of multi-epoch VLBI observations of water masers in the AGFL 5142 massive star forming region. We measure an annual parallax of $\pi=0.467 \pm 0.010$ mas, corresponding to a source distance of $D=2.14^{+0.051}_{-0.049}$ kpc. Proper motion and line of sight velocities reveal the 3D kinematics of masers in this region, most of which associate with millimeter sources from the literature. In particular we find remarkable bipolar bowshocks expanding from the most massive member, AFGL 5142 MM1, which are used to investigate the physical properties of its protostellar jet. We attempt to link the known outflows in this region to possible progenitors by considering a precessing jet scenario and we discuss the episodic nature of ejections in AFGL 5142.
Knowledge Discovery with Electrocardiography Using Interpretable Deep Neural Networks

Despite the potentials of artificial intelligence (AI) in healthcare, very little work focuses on the extraction of clinical information or knowledge discovery from clinical measurements. Here we propose a novel deep learning model to extract characteristics in electrocardiogram (ECG) and explore its usage in knowledge discovery. Utilising a 12-lead ECG dataset (n_ECGs = 2,322,513) collected from unique subjects (n_Subjects = 1,558,772) in primary care, we performed three independent medical tasks with the proposed model: (i) cardiac abnormality diagnosis, (ii) gender identification, and (iii) hypertension screening. We achieved an area under the curve (AUC) score of 0.998 (95% confidence interval (CI), 0.995-0.999), 0.964 (95% CI, 0.963-0.965), and 0.839 (95% CI, 0.837-0.841) for each task, respectively; We provide interpretation of salient morphologies and further identified key ECG leads that achieve similar performance for the three tasks: (i) AVR and V1 leads (AUC=0.990 (95% CI, 0.982-0.995); (ii) V5 lead (AUC=0.900 (95% CI, 0.899-0.902)); and (iii) V1 lead (AUC=0.816 (95% CI, 0.814-0.818)). Using ECGs, our model not only has demonstrated cardiologist-level accuracy in heart diagnosis with interpretability, but also shows its potentials in facilitating clinical knowledge discovery for gender and hypertension detection which are not readily available.
Brain stimulation reveals distinct motives underlying reciprocal punishment and reward

Reciprocal fairness, in the form of punishment and reward, is at the core of human societal order. Its underlying neural mechanisms are, however, not fully understood. We systemize suggestive evidence regarding the involvement of the right dorsolateral prefrontal cortex (rDLPFC) and medial prefrontal cortex (mPFC) in reciprocal fairness in three cognitive mechanisms (cognitive control, domain-general and self-reference). We test them and provide novel insights in a comprehensive behavioural experiment with non-invasive brain stimulation where participants can punish greedy actions and reward generous actions. Brain stimulation of either brain area decreases reward and punishment when reciprocation is costly but unexpectedly increases reward when it is non-costly. None of the hypothesized mechanisms fully accounts for the observed behaviour, and the asymmetric involvement of the investigated brain areas in punishment and reward suggests that different psychological mechanisms are underlying punishing selfishness and rewarding generosity. We propose that, for reciprocal punishment, the rDLPFC and the mPFC process self-relevant information, in terms of both personal cost and personal involvement; for reciprocal reward, these brain regions are involved in controlling selfish and pure reciprocity motives, while simultaneously promoting the enforcement of fairness norms. These insights bear importance for endeavours to build biologically plausible models of human behaviour.
The budding yeast GSK-3 homologue Mck1 is an essential component of the spindle position checkpoint

The spindle position checkpoint (SPOC) is a mitotic surveillance mechanism in Saccharomyces cerevisiae that prevents cells from completing mitosis in response to spindle misalignment, thereby contributing to genomic integrity. The kinase Kin4, one of the most downstream SPOC components, is essential to stop the mitotic exit network (MEN), a signalling pathway that promotes the exit from mitosis and cell division. Previous work, however, suggested that a Kin4-independent pathway contributes to SPOC, yet the underlying mechanisms remain elusive. Here, we established the glycogen-synthase-kinase-3 (GSK-3) homologue Mck1, as a novel component that works independently of Kin4 to engage SPOC. Our data indicate that both Kin4 and Mck1 work in parallel to counteract MEN activation by the Cdc14 early anaphase release (FEAR) network. We show that Mck1's function in SPOC is mediated by the pre-replication complex protein and mitotic cyclin-dependent kinase (M-Cdk) inhibitor, Cdc6, which is degraded in a Mck1-dependent manner prior to mitosis. Moderate overproduction of Cdc6 phenocopies MCK1 deletion and causes SPOC deficiency via its N-terminal, M-Cdk inhibitory domain. Our data uncover an unprecedented role of GSK-3 kinases in coordinating spindle orientation with cell cycle progression.
Bénard convection in a slowly rotating penny-shaped cylinder subject to constant heat flux boundary conditions

Abstract We consider axisymmetric Boussinesq convection in a shallow cylinder of radius $L$ and depth $H (\ll L)$, which rotates with angular velocity $\varOmega$ about its axis of symmetry aligned to the vertical. Constant heat flux boundary conditions, top and bottom, are adopted, for which the onset of instability occurs on a long horizontal length scale provided that $\varOmega$ is sufficiently small. We investigate the nonlinear development by well-established two-scale asymptotic expansion methods. Comparisons of the results with the direct numerical simulations (DNS) of the primitive governing equations are good at sufficiently large Prandtl number $\sigma$. As $\sigma$ is reduced, the finite amplitude range of applicability of the asymptotics reduces in concert. Though the large meridional convective cell, predicted by the DNS, is approximated adequately by the asymptotics, the azimuthal flow fails almost catastrophically, because of significant angular momentum transport at small $\sigma$, exacerbated by the cylindrical geometry. To appraise the situation, we propose hybrid methods that build on the meridional streamfunction $\psi$ derived from the asymptotics. With $\psi$ given, we solve the now linear azimuthal equation of motion for the azimuthal velocity $v$ by DNS. Our ‘hybrid’ methods enable us to explain features of the flow at large Rayleigh number, found previously by Oruba et al. (J. Fluid Mech., vol. 812, 2017, pp. 890–904).