Miracle-dz/UniFAR-FTUs huggingface dataset:
An Assessment of Annual Mortality Attributable to Ambient PM2.5 in Bangkok, Thailand

Multiple studies indicate that PM2.5 is the most deleterious air pollutant for which there are ambient air quality standards. Daily concentrations of PM2.5 in Bangkok, Thailand, continuously exceed the World Health Organization (WHO) and the Thai National Ambient Air Quality Standards (NAAQSs). Bangkok has only recently begun to measure concentrations of PM2.5. To overcome this paucity of data, daily PM2.5/PM10 ratios were generated over the period 2012–2018 to interpolate missing values. Concentration-response coefficients (β values) for PM2.5 versus non-accidental, cardiopulmonary, and lung cancer mortalities were derived from the literature. Values were also estimated and were found to be comparable to those reported in the literature for a Chinese population, but considerably lower than those reported in the literature from the United States. These findings strongly suggest that specific regional β values should be used to accurately quantify the number of premature deaths attributable to PM2.5 in Asian populations. Health burden analysis using the Environmental Benefits Mapping and Analysis Program (BenMAP) showed that PM2.5 concentration in Bangkok contributes to 4240 non-accidental, 1317 cardiopulmonary, and 370 lung cancer mortalities annually. Further analysis showed that the attainment of PM2.5 levels to the NAAQSs and WHO guideline would reduce annual premature mortality in Bangkok by 33%and 75%, respectively.
A Review on Salt and Drought Resistance Gene Engineering in Plants

The main cloned salt and drought resistance genes and th eir origination, genetic mechanisms, expression and stability in higher plants, and their salt and drought resistance in transgenic plants were reviewed.Meanwhi le, the signal transduction and transcriptional factor genes to increase dehydra tion-stress tolerance in transgenic plants were also introduced.
Integrated Systems of Weed Management in Organic Transplanted Vidalia® Sweet Onion Production

Field experiments were conducted from 2008 through 2010 near Lyons, GA, to develop integrated weed management systems for organic Vidalia sweet onion (Allium cepa) production. Treatments were a factorial arrangement of summer solarization, cultivation with a tine weeder, and a clove oil herbicide. Plots were solarized with clear plastic mulch during the summer fallow period before transplanting onion. Cultivation treatments were twice at 2-week intervals, four times at 2-week intervals, and a noncultivated control. Herbicide treatments were clove oil plus vinegar, clove oil plus an emulsified petroleum oil (EPO) insecticide used as an adjuvant, and a nontreated control. ‘Savannah Sweet’ onions were transplanted in early-December each year, with cultivation and herbicide applications events occurring the following January and February. Onions were harvested the following spring. In addition to yield measurement, a subsample of harvested onion was stored in a controlled atmospheric (CA) storage facility to evaluate treatment effects on diseases of stored onion. Summer fallow solarization did not control the cool-season weeds present in these trials. Cultivating transplanted onion with a tine weeder effectively managed cutleaf eveningprimrose (Oenothera laciniata) and swinecress (Coronopus didymus) and improved onion yields in 2 of 3 years. There was little difference in overall performance between two cultivations and four cultivations with the tine weeder. The 1 year of marginal weed control with the tine weeder was due to persistently wet soils during winter months that inhibited optimum performance of the implement. Clove oil, combined with vinegar or an EPO insecticide, provided marginal weed control and had no effect on onion yield. Diseases of stored onion were unaffected by any of the treatment combinations, although overall incidence of diseases of stored onion was higher in 2010 compared with other years. This corresponds with the 1 year of marginal weed control with the tine weeder, suggesting that the presence of weeds may be a factor related to disease incidence during storage.
Transient activation of mTORC1 signaling in skeletal muscle is independent of Akt1 regulation

The regulation of cellular protein synthesis is a critical determinant of skeletal muscle growth and hypertrophy in response to an increased workload such as resistance exercise. The mechanistic target of rapamycin complex 1 (mTORC1) and its upstream protein kinase Akt1 have been implicated as a central signaling pathway that regulates protein synthesis in the skeletal muscle; however, the precise molecular regulation of mTORC1 activity is largely unknown. This study employed germline Akt1 knockout (KO) mice to examine whether upstream Akt1 regulation is necessary for the acute activation of mTORC1 signaling in the plantaris muscle following mechanical overload. The phosphorylation states of S6 kinase 1, ribosomal protein S6, and eukaryotic translation initiation factor 4E‐binding protein 1 which show the functional activity of mTORC1 signaling, were significantly increased in the skeletal muscle of both wildtype and Akt1 KO mice following an acute bout (3 and 12 hr) of mechanical overload. Akt1 deficiency did not affect load‐induced alteration of insulin‐like growth factor‐1 (IGF‐1)/IGF receptor mRNA expression. Also, no effect of Akt1 deficiency was observed on the overload‐induced increase in the gene expressions of pax7 and myogenic regulatory factor of myogenin. These observations show that the upstream IGF‐1/Akt1 regulation is dispensable for the acute activation of mTORC1 signaling and regulation of satellite cells in response to mechanical overload.
Extended Spectrum β-Lactamase (ESBL) Producing Escherichia coli in Pigs and Pork Meat in the European Union

The aim of this article is to review the fast and worldwide distribution of ESBL enzymes and to describe the role of the pork production chain as a reservoir and transmission route of ESBL-producing Escherichia coli and ESBLs in the European Union (EU). The use of β-lactam antibiotics in swine production and the prevalence of ESBL producing E. coli in fattening pigs and pork meat across Europe is analyzed. Overall, an increasing trend in the prevalence of presumptive ESBL producing E. coli in fattening pigs in the EU has been observed in the last decade, although with major differences among countries, linked to different approaches in the use of antimicrobials in pork production within the EU. Moreover, the various dissemination pathways of these bacteria along the pork production chain are described, along with factors at farm and slaughterhouse level influencing the risk of introducing or spreading ESBL producing bacteria throughout the food chain.
Evaluation of the primary stability in dental implants placed in low density bone with a new drilling technique, Osseodensification: an in vitro study

Background Primary stability is an important key determinant of implant osseointegration. We investigated approaches to improve primary implant stability using a new drilling technique termed osseodensification (OD), which was compared with the conventional under-drilling (UD) method utilized for low-density bones. Material and Methods We placed 55 conical internal connection implants in each group, in 30 low-density sections of pig tibia. The implants were placed using twist drill bits in both groups; groups Under Drilling (UD) and Osseodensification (OD) included bone sections subjected to conventional UD and OD drilling, respectively. Before placing the implants, we randomized the bone sections that were to receive these implants to avoid sample bias. We evaluated various primary stability parameters, such as implant insertion torque and resonance frequency analysis (RFA) measurements. Results The results showed that compared with implants placed using the UD technique, those placed using the OD technique were associated with significantly higher primary stability. The mean insertion torque of the implants was 8.87±6.17 Ncm in group 1 (UD) and 21.72±17.14 Ncm in group 2 (OD). The mean RFA was 65.16±7.45 ISQ in group 1 (UD) and 69.75±6.79 ISQ in group 2 (OD). Conclusions The implant insertion torque and RFA values were significantly higher in OD group than in UD. Therefore, compared with UD, OD improves primary stability in low-density bones (based on torque and RFA measurements). Key words:Osseodensification, primary stability, low density bone, RFA.
TRIM4 interacts with TRPM8 and regulates its channel function through K423‐mediated ubiquitination

Transient receptor potential melastatin member 8 (TRPM8), a Ca2+‐permeable nonselective cation channel activated by cold and cooling agents, mediates allodynia. Dysfunction or abnormal expression of TRPM8 has been found in several human cancers. The role of ubiquitination in the regulation of TRPM8 function remains poorly understood. Here, we identified the ubiquitin (Ub)‐ligase E3, tripartite motif‐containing 4 (TRIM4), as a novel interaction partner of TRPM8 and confirmed that the TRIM4–TRPM8 interaction was mediated through the SPRY domain of TRIM4. Patch‐clamp assays showed that TRIM4 negatively regulates TRPM8‐mediated currents in HEK293 cells. Moreover, TRIM4 reduced the expression of TRPM8 on the cell surface by promoting the K63‐linked ubiquitination of TRPM8. Further analyses revealed that the TRPM8 N‐terminal lysine residue at 423 was the major ubiquitination site that mediates its functional regulation by TRIM4. A Ub‐activating enzyme E1, Ub‐like modifier‐activating enzyme 1 (UBA1), was also found to interact with TRPM8, thereby regulating its channel function and ubiquitination. In addition, knockdown of UBA1 impaired the regulation of TRPM8 ubiquitination and function by TRIM4. Thus, this study demonstrates that TRIM4 downregulates TRPM8 via K423‐mediated TRPM8 ubiquitination and requires UBA1 to regulate TRPM8.
Mechanisms of muscle insulin resistance and the cross‐talk with liver and adipose tissue

Insulin resistance is a metabolic disorder affecting multiple tissues and is a precursor event to type 2 diabetes (T2D). As T2D affects over 425 million people globally, there is an imperative need for research into insulin resistance to better understand the underlying mechanisms. The proposed mechanisms involved in insulin resistance include both whole body aspects, such as inflammation and metabolic inflexibility; as well as cellular phenomena, such as lipotoxicity, ER stress, and mitochondrial dysfunction. Despite numerous studies emphasizing the role of lipotoxicity in the pathogenesis of insulin resistance, an understanding of the interplay between tissues and these proposed mechanisms is still emerging. Furthermore, the tissue‐specific and unique responses each of the three major insulin target tissues and how each interconnect to regulate the whole body insulin response has become a new priority in metabolic research. With an emphasis on skeletal muscle, this mini‐review highlights key similarities and differences in insulin signaling and resistance between different target‐tissues, and presents the latest findings related to how these tissues communicate to control whole body metabolism.
Cytotoxicity Effects of Water-Soluble Multi-Walled Carbon Nanotubes Decorated with Quaternized Hyperbranched Poly(ethyleneimine) Derivatives on Autotrophic and Heterotrophic Gram-Negative Bacteria

Oxidized multi-walled carbon nanotubes (oxCNTs) were functionalized by a simple non-covalent modification procedure using quaternized hyperbranched poly(ethyleneimine) derivatives (QPEIs), with various quaternization degrees. Structural characterization of these hybrids using a variety of techniques, revealed the successful and homogenous anchoring of QPEIs on the oxCNTs’ surface. Moreover, these hybrids efficiently dispersed in aqueous media, forming dispersions with excellent aqueous stability for over 12 months. Their cytotoxicity effect was investigated on two types of gram(−) bacteria, an autotrophic (cyanobacterium Synechococcus sp. PCC 7942) and a heterotrophic (bacterium Escherichia coli). An enhanced, dose-dependent antibacterial and anti-cyanobacterial activity against both tested organisms was observed, increasing with the quaternization degree. Remarkably, in the photosynthetic bacteria it was shown that the hybrid materials affect their photosynthetic apparatus by selective inhibition of the Photosystem-I electron transport activity. Cytotoxicity studies on a human prostate carcinoma DU145 cell line and 3T3 mouse fibroblasts revealed that all hybrids exhibit high cytocompatibility in the concentration range, in which they also exhibit both high antibacterial and anti-cyanobacterial activity. Thus, QPEI-functionalized oxCNTs can be very attractive candidates as antibacterial and anti-cyanobacterial agents that can be used for potential applications in the disinfection industry, as well as for the control of harmful cyanobacterial blooms.
Primary HPV screening for cervical cancer: Results after two screening rounds in a regional screening program in Finland

Since 2012, cervical cancer screening has been conducted with a primary high‐risk human papillomavirus (hrHPV) test and conventional cytology triage in the city of Tampere, Finland. The women who were screened with the hrHPV test in 2012 were invited to participate in the second screening round in 2017. The aim of the present report was to compare the number of colposcopy referrals and the number of histological high‐grade squamous intraepithelial lesion (HSIL)+ (cervical intraepithelial neoplasia [CIN2+]) lesions between the first and second screening rounds of women of a specific age group who were screened twice with the hrHPV test.
Royal jelly attenuates metabolic defects in a Drosophila mutant with elevated TORC1 activity

ABSTRACT Target of rapamycin complex 1 (TORC1) is a master regulator of cell metabolism, and its dysregulation has been linked to an array of pathologies, including cancer and age-related diseases. Nprl3, a component of GTPase-activating protein towards Rags complex 1 (GATOR1), inhibits TORC1 activity under nutrient scarcity status. The nprl3 mutant exhibits some metabolic defects due to hyper TORC1 activity in Drosophila. Royal jelly (RJ) is a honeybee-secreted product and plays an essential role in caste differentiation that requires TORC1 activity. RJ is also used as a health-benefit food for its potential roles on antioxidant and anti-aging. In this study, nprl3-mutant flies were used to measure the effect of RJ on metabolic modulation. Interestingly, RJ feeding significantly increased survival and decreased TORC1 activity in the nprl3 mutant. RJ feeding also ameliorated the abnormal reactive oxygen species (ROS) levels and energy status in the nprl3 mutant. The proteins in RJ were characterized to be the essential components in increasing nprl3 mutant viability. These findings suggest that RJ modulates some metabolic defects associated with elevated TORC1 activity and that the nprl3-mutant fly might be a useful tool for investigating the bioactive components of RJ in vivo. Summary: Royal jelly (RJ) modulates the reactive oxygen species (ROS) levels and some metabolic defects that associated with hyper TORC1 activity in a Drosophila model.
(Almost) all Quiet Over One and a Half Years: A Longitudinal Study on Causality Between Key Determinants of Private Flood Mitigation

Previous studies do not agree on the strengths and directions of the effects between risk appraisal, nonprotective, and protective responses in private flood mitigation. This may be due to the widespread use of cross‐sectional survey designs, which infer causality from theoretical considerations alone. The present longitudinal study, in contrast, builds on the logic that cause precedes effect to confirm the direction of effects.
Lysogeny in Streptococcus pneumoniae

Bacterial viruses, or bacteriophages, are major contributors to the evolution, pathogenesis and overall biology of their host bacteria. During their life cycle, temperate bacteriophages form stable associations with their host by integrating into the chromosome, a process called lysogeny. Isolates of the human pathogen Streptococcus pneumoniae are frequently lysogenic, and genomic studies have allowed the classification of these phages into distinct phylogenetic groups. Here, we review the recent advances in the characterization of temperate pneumococcal phages, with a focus on their genetic features and chromosomal integration loci. We also discuss the contribution of phages, and specific phage-encoded features, to colonization and virulence. Finally, we discuss interesting research perspectives in this field.
Changes in the Systemic Expression of Sirtuin-1 and Oxidative Stress after Intravitreal Anti-Vascular Endothelial Growth Factor in Patients with Retinal Vein Occlusion

Objectives: Retinal vein occlusions (RVO) are associated with systemic risk factors. However, the ocular occlusive events might also influence a patient’s systemic condition. This study tried to investigate serum biomarkers associated with oxidative stress, before and after intravitreal anti-vascular endothelial growth factor (aVEGF) therapy in patients with RVOs. Methods: Newly-onset RVO patients were categorized into two groups: comorbid with macular edema requiring aVEGF therapy (treatment group) and no edema (observation group). Age and sex-matched patients (who received cataract surgery) were included as the control group. Intravitreal ranibizumab with a pro-re-nata regimen were administered. Serum samples were collected prior to treatment, at 6 and 12 months after therapy/observation and were collected once before controls who received cataract surgery. mRNA expression of sirtuin-1, its downstream genes, anti-oxidative biomarkers, and proinflammatory cytokines were measured. Results: There were 32, 26, and 34 patients enrolled in the treatment, observation, and control groups, respectively. The expressions of sirtuin-1 and its downstream genes were significantly lower in patients with RVO compared with the control group. Sirtuin-1 gene expression increased after 1 year of aVEGF therapy in the treatment group but remained unchanged in the observation group. Biomarkers of oxidative stress and proinflammatory cytokines were reduced after 1 year of aVEGF therapy. These biomarkers remained with no changes in the observation group. Conclusions: Our study showed that the systemic oxidative stress increased in RVO patients. The aVEGF therapy could alter the gene expression of anti-oxidative proteins and reduce systemic oxidative stress in these patients.
Effect of Breed on the Level of the Nutritional and Health-Promoting Quality of Semimembranosus Muscle in Purebred and Crossbred Bulls

Simple Summary Beef is an important natural source of nutrients as well as of bioactive ingredients that improve our health. It is an excellent source of alanine, creatine, carnosine, anserine, and polyunsaturated fatty acid (PUFA), which plays an important preventative role in carcinogenic processes. The strategy for rearing and feeding cattle for slaughter should be directed at reducing saturated fatty acid (SFA) in beef fat and/or increasing PUFA, especially n-3. Therefore, the aim of the study was to determine the influence of breed types on the nutritional and pro-health quality of beef. The experiment was conducted in Poland, on 62 bulls from three breeds: Limousin, Polish Holstein-Friesian, and Polish Holstein-Friesian × Limousin. Bulls were slaughtered at 21–23 months of age, and samples of semimembranosus muscle (300 g) were cut parallel to the muscle axis at 24 h postmortem. It can be concluded that commodity crossbreeding significantly improved the quality of beef, resulting in similar or even better results than purebred cattle. Abstract Meat from commercial breed cattle are very often used to crossbreed with dairy breeds. The effect of heterosis is most evident when crossbreeds are genetically different from each other. Therefore, the aim of the study was to determine the influence of breed types on the nutritional and pro-health quality of beef. The experiment was conducted on 62 bulls from three breeds: Limousin, Polish Holstein-Friesian, and Polish Holstein-Friesian (PHF) × Limousin. During the fattening period, the animals were fed ad libitum using the same diet. Bulls were slaughtered at 21–23 months of age. The meat of PHF × Limousin hybrids was characterized by the lowest level of SFA and the highest content of n-3 PUFA fatty acids, carnosine, and α-tocopherol compared to the values obtained for the Polish Holstein-Friesian and Limousin breeds. In the case of PHF × Limousin hybrids, there was a 6% increase in n-3 PUFA, 21% in carnosine, and 66% in α-tocopherol compared to the Polish Holstein-Friesian breed. Commodity crossbreeding significantly improved the quality of beef analyzed in this study, resulting in similar or even better results than purebred cattle. This meant that beef from the hybrids with PHF was of the best nutritional and health-promoting quality.
Regarding Blood-Based Next-Generation Sequencing Analysis of Appendiceal Cancers.

Appendix cancer is a rare disease, and the publication of such a large patient cohort is commendable; however, I am concerned that the conclusion of Shaib et al. [1], namely, that evaluation of circulating tumor DNA (ctDNA) is feasible among patients with appendiceal cancer, is not supported by the presented data. Specifically, the authors claim that the frequencies of genomic alterations in liquid next-generation sequencing (NGS) are similar to those previously reported for tissue NGS. However, comparing the results reported by Shaib et al. for liquid NGS with the largest cohort of tissue NGS reveals stark differences. Overall, an alteration could only be identified in 184 of 303 patients (60.7%), even counting for the fact that some patients were tested multiple times. Restricting the tissue NGS gene panel to just the 73 genes tested in liquid NGS, at least one alteration was found in 658 of 703 patients (93.6%) in tissue NGS [2]. Second, it is important to note that the mutation spectrum of different subtypes of appendiceal cancer are quite different. Unfortunately, the histology was only known for a fraction of the patients reported in the Shaib et al. study. Working on the assumption that the same distribution seen in the 63 cases with known histology (52% mucinous adenocarcinoma, 22% adenocarcinoma, 22% goblet cell carcinoma) was similar to that of the rest of the 303-patient cohort, we can estimate the number of patients with each histology. Using the reported mutation frequencies in tissue NGS [2] for each subtype, 103 patients would be expected to have GNAS mutation, but only 8 were found by liquid NGS (Table 1). Analysis of other genes (TP53, KRAS, APC, SMAD4, ARID1A, ERBB2) shows that in every case the number of mutations detected in liquid NGS is less than expected based on tissue NGS (Table 2). Interestingly, the disparity is highly variable for different genes, ranging from an expected to observed ratio of 1.5 to more than 30. Given that certain mutations, such as GNAS, are known to be enriched in low-grade tumors, whereas others, such as TP53, are enriched in high-grade, these observed differences suggest that low-grade tumors are less likely to shed DNA into the blood. To ultimately answer the question of whether liquid NGS is a reasonable surrogate of tissue NGS for all forms of