Miracle-dz/UniFAR-FTUs huggingface dataset:
Adaptive Development of Soil Bacterial Communities to Ecological Processes Caused by Mining Activities in the Loess Plateau, China

Microorganisms are the driving force behind the circulation and transformation of the soil substance. The development of soil bacterial communities is critical for ecosystem restoration and evolution. In the Loess Plateau, coal mining activities have aggravated the deterioration of the fragile local ecological environment. The adaptive development of soil bacterial communities in response to different ecological processes caused by coal mining activities was explored through high-throughput sequencing technology and an ecological network analysis of the mining subsidence area of the Daliuta Coal Mine and vegetation rehabilitation area of the Heidaigou Coal Mine in the Loess Plateau. The results showed that while mining subsidence was inhibited, vegetation rehabilitation promoted the soil physicochemical properties. Soil organic matter, available phosphorus and available potassium in the subsidence area decreased significantly (P < 0.05), while soil organic matter, soil water, pH and EC in the vegetation rehabilitation area increased significantly (P < 0.05). The diversity index in the subsidence area decreased by about 20%, while that in the vegetation rehabilitation area increased by 63%. Mining subsidence and vegetation rehabilitation had a distinct influence on the molecular ecological networks of the soil bacteria, which tended to be more complex after the mining subsidence, and the number of connections in the network increased otherwise significantly enhanced interactive relationships. After the vegetation rehabilitation, the number of modules in the ecological network increased, but the contents of modules tended to be simpler. Soil bacterial communities adapted to the changes by changing the relationships between bacteria in response to different ecological processes. This study provides new insights into the monitoring and abatement of the damaged ecological environment in mines.
Carbon declines along tropical forest edges correspond to heterogeneous effects on canopy structure and function

Significance Tropical forests constitute the largest terrestrial component of the global carbon budget. However, rapid agricultural expansion has left these landscapes highly fragmented, calling into question their capacity to cycle and store carbon. We utilized airborne mapping approaches that revealed changes in aboveground carbon and key aspects of ecosystem structure and function in forest edges along oil palm plantations in Malaysian Borneo. We found widespread evidence of significant changes in canopy structure and foliar traits related to light capture, growth, and productivity along forest edges that corresponded to declines in aboveground carbon. These changes underpin carbon declines that varied spatially, with far-reaching implications for the conservation of forest biodiversity and carbon stocks. Nearly 20% of tropical forests are within 100 m of a nonforest edge, a consequence of rapid deforestation for agriculture. Despite widespread conversion, roughly 1.2 billion ha of tropical forest remain, constituting the largest terrestrial component of the global carbon budget. Effects of deforestation on carbon dynamics in remnant forests, and spatial variation in underlying changes in structure and function at the plant scale, remain highly uncertain. Using airborne imaging spectroscopy and light detection and ranging (LiDAR) data, we mapped and quantified changes in forest structure and foliar characteristics along forest/oil palm boundaries in Malaysian Borneo to understand spatial and temporal variation in the influence of edges on aboveground carbon and associated changes in ecosystem structure and function. We uncovered declines in aboveground carbon averaging 22% along edges that extended over 100 m into the forest. Aboveground carbon losses were correlated with significant reductions in canopy height and leaf mass per area and increased foliar phosphorus, three plant traits related to light capture and growth. Carbon declines amplified with edge age. Our results indicate that carbon losses along forest edges can arise from multiple, distinct effects on canopy structure and function that vary with edge age and environmental conditions, pointing to a need for consideration of differences in ecosystem sensitivity when developing land-use and conservation strategies. Our findings reveal that, although edge effects on ecosystem structure and function vary, forests neighboring agricultural plantations are consistently vulnerable to long-lasting negative effects on fundamental ecosystem characteristics controlling primary productivity and carbon storage.
Is an Increased Risk of Developing Guillain–Barré Syndrome Associated with Seasonal Influenza Vaccination? A Systematic Review and Meta-Analysis

While the weight of epidemiological evidence does not support a causal link with influenza vaccination evaluated over the last 30 years, Guillain–Barré syndrome (GBS) has been considered a vaccine-associated adverse event of interest since 1976. To investigate the existence of GBS risk after vaccination against seasonal influenza, a systematic review and meta-analysis have been conducted based on 22 eligible epidemiological studies from 1981 to 2019 reporting 26 effect sizes (ESs) in different influenza seasons. The primary result of our meta-analysis pointed to no risk of vaccine-associated GBS, as documented by a pooled ES of 1.15 (95% CI: 0.97–1.35). Conversely, an obvious high risk of GBS was observed in patients with previous influenza-like illness (ILI), as demonstrated by a pooled ES of 9.6 (95% CI: 4.0–23.0) resulting from a supplementary analysis. While the meta-analysis did not confirm the putative risk of vaccine-associated GBS suggested by many epidemiological studies, vaccination against seasonal influenza reduced the risk of developing ILI-associated GBS by about 88%. However, to obtain strong evidence, more epidemiological studies are warranted to establish a possible coincidence between vaccination and ILI prior to GBS onset.
Attentional repulsion effects produced by feature-guided shifts of attention

Attention shifts to particular objects in the visual field can distort perceptual location judgments. Visual stimuli are perceived to be shifted away from the current focus of attention (the attentional repulsion effect [ARE]). Although links between repulsion effects and stimulus-driven exogenous attentional capture have been demonstrated conclusively, it remains disputed whether AREs can also be elicited as a result of feature-guided attention shifts that are controlled by endogenous task sets. Here we demonstrate that this is indeed the case. Color singleton cues that appeared together with equiluminant gray items triggered repulsion effects only if they matched a current task-relevant color but not when their color was irrelevant. When target-color and nontarget-color singleton cues appeared in the same display, AREs emerged relative to the position of the target-color cue. By obtaining independent behavioral measures of perceptual repulsion and electrophysiological measures of attentional capture by target-color cues, we also showed that these two phenomena are correlated. Individuals who were more susceptible to attentional capture also produced larger AREs. These results confirm the existence of links between task-set contingent attentional capture and AREs. They also provide the first direct demonstration of the attentional nature of these effects with online brain activity measures: perceptual repulsion arises as the result of prior feature-guided attention shifts to specific locations in the visual field.
Do subcortical gray matter volumes and aerobic capacity account for cognitive-motor coupling in multiple sclerosis?

Background: There is evidence of cognitive-motor coupling in multiple sclerosis (MS) such that the slowing of cognitive processing speed correlates with the worsening of walking speed and endurance. Objective: The current study first established the presence of cognitive-motor coupling and second examined the possibility that volumes of subcortical gray matter (SGM) structures and aerobic capacity might explain the coupling of cognitive and motor functions in persons with MS. Methods: We included data from 62 persons with clinically definite MS who underwent assessments of cognitive processing speed, walking performance, and aerobic capacity, and completed magnetic resonance imaging (MRI) within 7 days of the aforementioned assessments. Results: The strong correlations between cognitive processing speed and walking performance were attenuated in magnitude and not statistically significant when controlling for aerobic capacity alone and aerobic capacity and SGM volumes together. The associations between cognitive processing speed and walking performance remained statistically significant when controlling for SGM volumes alone. Conclusion: Aerobic capacity may be an important target for neurorehabilitation-based approaches for managing co-occurring cognitive and motor dysfunction in MS.
Differences in Lifestyle Behaviours of Students between Inner Urban and Peri-urban High Schools: A Cross-Sectional Study in Chongqing, China

Background: Lifestyle behaviours of students from schools in different socioeconomic areas may be different. Few studies have investigated such topics in China. This study aimed to explore the differences in lifestyle behaviours between inner urban high school students (IUHSSs) and peri-urban high school students (PUHSSs). Methods: A cross-sectional survey based on a self-report questionnaire was administered among 1560 high school students (726 from inner urban high schools and 834 from peri-urban high schools) in Chongqing, China. Physical activity, sleep time, screen time and dietary behaviours were assessed according to a series of recommendations of Chinese guidelines. Results: No significant difference was found in meeting the recommendation for daily physical activity between IUHSSs and PUHSSs (7.6% vs. 6.8%, p > 0.05). PUHSSs were more likely to meet the recommendations of weekdays’ sleep time (14.9% vs. 5.4%, p < 0.001), weekdays’ and weekends’ screen time (85.4% vs. 76.7%, p < 0.001; 21.1% vs. 14.3%, p < 0.001), and had higher proportion of high-score group of dietary behaviours (58.6% vs. 36.4%, p < 0.001) than those of IUHSSs. IUHSSs were more likely to meet the recommendation of weekends’ sleep time (75.6% vs. 67.9%, p < 0.001) than that of PUHSSs. Conclusions: A low proportion met the recommendations of physical activity, weekdays’ sleep time and weekends’ screen time among high school students in Chongqing, China. Lifestyle behaviours may differ between inner urban and peri-urban high school students. Additional support or targeted health education should be provided by high schools to improve the lifestyle behaviours of students, especially in inner urban districts.
Effect of resveratrol and aerobic exercise on some cardiovascular risk factors in rats with acute myocardial infarction

Introduction : Coronary heart disease is the most common cause of myocardial ischemia. The present study was aimed to evaluate the effect of resveratrol and aerobic exercise together and singularly on some cardiovascular risk factors in rat model of acute heart failure due to isoproterenol application. Materials and Methods: In this experimental study, 46 male Wistar rats were divided into five groups randomly as follows: the healthy control (CON), isoproterenol induced myocardial infarction without implementation (ISO), resveratrol treated rats (ISO+RES), exercise treated rats (ISO+EXE) and combination of resveratrol and exercise groups (ISO+RES+EXE). Rats in the resveratrol groups received daily dose of 25 mg/kg/bw of resveratrol and exercise groups ran 1 h/d and 8 weeks on treadmill. Subsequently, all animals received subcutaneous isoproterenol on two consecutive days at the end of experiment. Then, animals anesthetized and blood samples were collected for analysis. Results: The results showed that pretreatment with a combination of resveratrol and aerobic exercise led to a significant reduction in troponin-I in the animals. Also, exercise training, resveratrol and combinations of them were prevented the increasing CRP indices, but there was not significant effect in these groups (P> 0.05). Pretreatment with exercise training as well as combination of resveratrol and exercise training caused a significant decrease serum cholesterol and triglyceride levels were compared to the isoproterenol group (P≤ 0.001). Pretreatment with resveratrol, exercise training and a combination of both significantly increased in HDL-C and pretreatment only in mixed group led to significant decrease in LDL-C compared to the isoproterenol group (P ; 0.001). Conclusion: Regular exercise and resveratrol supplementation is likely to be effective on cardiovascular risk factors and the combination of the two variables in the prevention of inflammation and will have a significant role in heart damage caused by myocardial infarction.
Neural correlates of negative expectancy and impaired social feedback processing in social anxiety

Abstract Social anxiety has been associated with abnormalities in cognitive processing in the literature, manifesting as various cognitive biases. To what extent these biases interrupt social interactions remains largely unclear. This study used the Social Judgment Paradigm that could separate the expectation and experience stages of social feedback processing. Event-related potentials (ERPs) in these two stages were recorded to detect the effect of social anxiety that might not be reflected by behavioral data. Participants were divided into two groups according to their social anxiety level. Participants in the high social anxiety (HSA) group were more likely to predict that they would be socially rejected by peers than did their low social anxiety (LSA) counterparts (i.e. the control group). Compared to the ERP data of the LSA group, the HSA group showed: (a) a larger P1 component to social cues (peer faces) prior to social feedback presentation, possibly indicating an attention bias; (b) a difference in feedback-related negativity amplitude between unexpected social acceptance and unexpected social rejection, possibly indicating an expectancy bias; and (c) a diminished sensitivity of the P3 amplitude to social feedback valence (be accepted/be rejected), possibly indicating an experience bias. These results could help understand the cognitive mechanisms that comprise and maintain social anxiety.
Clinicopathological evaluation of the donor area following autologous suction blister epithelial grafting vs Thiersch grafting in vitiligo patients: A preliminary study

Surgical vitiligo treatment is suggested for recalcitrant small stable lesions. One of the limitations of this approach is the presence of large lesions. The donor site should be designed to be hidden without previous or present lesions; this limits donor sites. Aim of the study was to clinically and histopathologically evaluate donor areas 3 months and 1 year after Thiersch grafting (TG) and suction blister epithelial grafting (SBEG). Forty patients with stable vitiligo were equally divided into two groups before TG and SBEG. In each patient, the donor site was clinically and histopathologically evaluated after 3 months and 1 year. After 3 months in Group I, hyperpigmentation, mixed pigmentation with atrophic scarring, hyperpigmentation with hypertrophic scarring, erythema, and tough skin were detected in 10%, 50%, 10%, 10%, and 20% of cases, respectively. The condition improved with time leaving, leaving tough skin in all cases after 1 year. In Group II, hyperpigmentation was observed in all patients after 3 months and disappeared completely after 1 year. Histologically, biopsies taken 3 months after TG, showed increased basal pigmentation with dermal changes mimicking scar tissue in 92.5% of cases. Collagen homogenization of and fragmented elastic tissue were reported in all cases. Biopsies showed the same features after 1 year. In the SBEG group, biopsies revealed only basal hyperpigmentation that disappeared after 1 year in all patients. We concluded that SBEG is a scarless operation and regrafting from the same area can be performed. This is in contrast to TG, which is considered a scarring operation, and wherein the donor site cannot be reused for grafting.
Securing timelines in the ancient Mediterranean using multiproxy annual tree-ring data

Significance This study demonstrates how different lines of evidence from tree rings in widely spread growth locations can combine to fix an approximately dated tree-ring record from the East Mediterranean Bronze–Iron Age to an exact calendar-dated range. This tree-ring record is of high importance for regional chronology and spans the time period in which the major volcanic eruption of Thera (Santorini) occurred. Exact dating of this eruption is important because it provides a prominent marker horizon through which ancient timelines of the East Mediterranean, Egypt, and the Levant can be synchronized. Chemical analysis of the dated tree-ring sequence identifies a chemical change in their growth environment around 1560 BC, which while requiring further substantiation, may be evidence of the Thera eruption. Calendar-dated tree-ring sequences offer an unparalleled resource for high-resolution paleoenvironmental reconstruction. Where such records exist for a few limited geographic regions over the last 8,000 to 12,000 years, they have proved invaluable for creating precise and accurate timelines for past human and environmental interactions. To expand such records across new geographic territory or extend data for certain regions further backward in time, new applications must be developed to secure “floating” (not yet absolutely dated) tree-ring sequences, which cannot be assigned single-calendar year dates by standard dendrochronological techniques. This study develops two approaches to this problem for a critical floating tree-ring chronology from the East Mediterranean Bronze–Iron Age. The chronology is more closely fixed in time using annually resolved patterns of 14C, modulated by cosmic radiation, between 1700 and 1480 BC. This placement is then tested using an anticorrelation between calendar-dated tree-ring growth responses to climatically effective volcanism in North American bristlecone pine and the Mediterranean trees. Examination of the newly dated Mediterranean tree-ring sequence between 1630 and 1500 BC using X-ray fluorescence revealed an unusual calcium anomaly around 1560 BC. While requiring further replication and analysis, this anomaly merits exploration as a potential marker for the eruption of Thera.
Estrogen receptors and progesterone receptors expression in endometrial carcinoma in diabetic versus nondiabetic patients

Introduction Egypt has been listed as one of the top 10 countries in terms of the prevalence of diabetes, which is associated with a two-fold increased risk of endometrial cancer (EC). EC is the most common gynecologic cancer and is largely hormone dependent. Aim In the current work, the expression of estrogen and progesterone receptors (ER and PR) was assessed in EC tissue among both diabetic and nondiabetic EC patients. Materials and methods Immunohistochemical staining of sections from paraffin-embedded EC tissue for ER and PR was carried out. Histopathologic factors and ER/PR expression as well as the difference in their expression between diabetic and nondiabetic cases were studied and statistically analyzed. Results Expression of ER and PR was detected in 94% of the cases studied. No statistical difference in ER/PR expression in the glands or the stroma was detected between diabetic and nondiabetic EC patients. Further, ER and PR expression was significantly related to tumor grade, with no difference between diabetics and nondiabetics in tumor grade. Conclusion There was no difference in the expression patterns of ER and PR in the glands and stroma between diabetic and nondiabetic EC patients. The parallel expression of both receptors was inversely proportional to the tumor grade.
Spectrum of Beta-Lactamase Inhibition by the Cyclic Boronate QPX7728, an Ultrabroad-Spectrum Beta-Lactamase Inhibitor of Serine and Metallo-Beta-Lactamases: Enhancement of Activity of Multiple Antibiotics against Isogenic Strains Expressing Single Beta-Lactamases

QPX7728 is an ultrabroad-spectrum boronic acid beta-lactamase inhibitor, with potent inhibition of key serine and metallo-beta-lactamases being observed in biochemical assays. Microbiological studies using characterized strains were used to provide a comprehensive characterization of the spectrum of beta-lactamase inhibition by QPX7728. The MICs of multiple antibiotics administered intravenously only (ceftazidime, piperacillin, cefepime, ceftolozane, and meropenem) and orally bioavailable antibiotics (ceftibuten, cefpodoxime, tebipenem) alone and in combination with QPX7728 (4 μg/ml), as well as comparator agents, were determined against panels of laboratory strains of Pseudomonas aeruginosa and Klebsiella pneumoniae expressing over 55 diverse serine and metallo-beta-lactamases. ABSTRACT QPX7728 is an ultrabroad-spectrum boronic acid beta-lactamase inhibitor, with potent inhibition of key serine and metallo-beta-lactamases being observed in biochemical assays. Microbiological studies using characterized strains were used to provide a comprehensive characterization of the spectrum of beta-lactamase inhibition by QPX7728. The MICs of multiple antibiotics administered intravenously only (ceftazidime, piperacillin, cefepime, ceftolozane, and meropenem) and orally bioavailable antibiotics (ceftibuten, cefpodoxime, tebipenem) alone and in combination with QPX7728 (4 μg/ml), as well as comparator agents, were determined against panels of laboratory strains of Pseudomonas aeruginosa and Klebsiella pneumoniae expressing over 55 diverse serine and metallo-beta-lactamases. QPX7728 significantly enhanced the potency of antibiotics against strains expressing class A extended-spectrum beta-lactamases (CTX-M, SHV, TEM, VEB, PER) and carbapenemases (KPC, SME, NMC-A, BKC-1), consistent with the beta-lactamase inhibition demonstrated in biochemical assays. It also inhibited both plasmidic (CMY, FOX, MIR, DHA) and chromosomally encoded (P99, PDC, ADC) class C beta-lactamases and class D enzymes, including carbapenemases, such as OXA-48 from Enterobacteriaceae and OXA enzymes from Acinetobacter baumannii (OXA-23/24/72/58). QPX7728 is also a potent inhibitor of many class B metallo-beta-lactamases (NDM, VIM, CcrA, IMP, and GIM but not SPM or L1). Addition of QPX7728 (4 μg/ml) reduced the MICs for a majority of the strains to the level observed for the control with the vector alone, indicative of complete beta-lactamase inhibition. The ultrabroad-spectrum beta-lactamase inhibition profile makes QPX7728 a viable candidate for further development.