Miracle-dz/UniFAR-FTUs huggingface dataset:
Distribution spatiale des invertébrés benthiques du réseau hydrographique Adour-Garonne : modélisation et impact de l'anthropisation

L'analyse d'un grand nombre de travaux publies decrivant la biodiversite a une echelle locale nous a permis de recenser 1093 especes d'invertebres benthiques provenant de 631 stations d'echantillonnage reparties dans l'ensemble du reseau hydrographique Adour-Garonne (sud-ouest de la France). La distribution spatiale de ces taxa dans le bassin donne lieu a des assemblages d'especes a partir desquels nous proposons une biotypologie des cours d'eau. Cette classification revele des differences longitudinales et geographiques de la composition des communautes a l'echelle regionale. Elle rend compte des differentes situations geomorphologiques rencontrees par les cours d'eau et fournit un cadre de reference utile a l'etude ecologique comme a la gestion des cours d'eau d'un grand reseau hydrographique. L'eau douce constitue aussi une ressource pour les activites humaines. Les communautes d'invertebres benthiques sont sensibles aux perturbation des cours d'eau et de leur environnement proche (utilisation des sols) qui modifient les gradients naturels de diversites specifique et fonctionnelle. La directive europeenne adoptee en 2000 definit un cadre pour la gestion, la preservation et la restauration des ressources en eau. Le grand reseau hydrographique y est clairement defini comme l'echelle d'etude adaptee. Ce travail montre qu'a cette echelle, la comprehension des ecosystemes aquatiques s'appuie necessairement sur l'analyse d'un grand nombre d'etudes locales. Il souligne egalement l'interet des systemes d'information geographique pour compiler et organiser les donnees ecologiques et les rendre exploitables au moyen de techniques d'analyse multivariees adaptees.
Plasma Fatty Acid Biomarkers of Dairy Consumption Are Associated with Sex-Dependent Effects on Metabolic Syndrome Components in Mexican Adolescents

Introduction: During adolescence, dairy product intake has shown conflicting associations with metabolic syndrome (MetS) components, which are risk factors for cardiovascular disease (CVD). This study aims to investigate the association between plasma fatty acids (FAs) C15:0, C17:0, and t-C16:1n-7, as biomarkers of dairy intake, with MetS and its components in Mexican adolescents. Methods: A sample of 311 participants from the Early Life Exposure in Mexico City to Environmental Toxicants (ELEMENT) cohort was included in this cross-sectional analysis. FA concentrations were measured in plasma as a percentage of total FA. We used quantile regression models stratified by sex to evaluate the association between FA quantiles and MetS components, adjusting for age, socioeconomic status (SES), sedentary behavior, BMI z-score, pubertal status, and energy intake. Results: We found significant associations between dairy biomarkers and the median of MetS variables. In females, t-C16:1n-7 was associated with a decrease of 2.97 cm in WC (Q4 vs. Q1; 95% CI: −5.79, −0.16). In males, C15:0 was associated with an increase of 5.84 mm/Hg in SBP (Q4 vs. Q1; CI: 1.82, 9.85). For HDL-C, we observed opposite associations by sex. C15:0 in males was associated with decreased HDL-C (Q3 vs. Q1: β = −4.23; 95% CI: −7.98, −0.48), while in females, C15:0 and t-C16:1n-7 were associated with increased HDL-C (Q3 vs. Q1: β = 4.75; 95% CI: 0.68, 8.82 and Q4 vs. Q1: β = 6.54; 95% CI: 2.01, 11.07), respectively. Additionally, in both sexes, different levels of C15:0, C17:0, and t-C16:1n-7 were associated with increased triglycerides (TG). Conclusion: Our results suggest that adolescent dairy intake may be associated in different directions with MetS components and that associations are sex-dependent.
Durability and long-term outcomes of biologic therapies in psoriasis

ABSTRACT Introduction Significant advances in psoriasis treatment have taken place since the introduction of biologics. Tumor necrosis factor inhibitors were the first class of biologics approved and at that time greatly improved psoriasis treatment. However, newer biologics, directed to interleukin(IL)-23/IL-17 pathways central to psoriasis pathogenesis, have improved complete or nearly complete clearance rates and are characterized by an excellent safety profile. Real-world setting experiences have generally confirmed the results of clinical trials, but real-world data regarding newer biologics is relatively scarce. Areas covered We provide an extensive review of real-world survival of biologic treatments for moderate to severe psoriasis. Expert opinion There is growing and consistent evidence of higher drug survival of IL-23 inhibitors, possibly due to their favorable efficacy and safety profiles, dosing convenience and persistence of response despite treatment interruption; eventual confirmation of their potential role as modifiers of the natural history of psoriasis might provide additional reasons for therapeutic persistence of this class of biologics.
Age-dependent regulation of dendritic spine density and protein expression in Mir324 KO mice

Dendritic spines are small, dynamic protrusions along the dendrite that comprise more than 90% of excitatory connections in the brain, making them essential sites for neuronal communication. These synaptic sites change throughout the process of development, reducing in density and shifting morphology as synapses are refined. One important class of dendritic spine regulators is microRNA (miRNA), small noncoding RNAs that post-transcriptionally regulate gene expression. Several studies suggest that miRNA-324-5p regulates dendritic spine formation. In addition, we have previously shown that miR-324-5p plays a role in seizure and long-term potentiation, both of which involve dendritic spine changes. In this study, we aimed to characterize the role of miRNA-324-5p in developmental spine regulation by assessing the effect of Mir324 knockout (KO) on dendritic spine density and expression of a subset of dendritic proteins at select developmental time points. We show that miR-324-5p expression is developmentally regulated and peaks at four weeks of age. We demonstrate that loss of miR-324-5p expression leads to differential changes in both target protein expression and spine density at different time points during development, disrupting the pattern of spine density changes and leading to a premature loss of dendritic spines in KO mice, which is compensated later. Our findings indicate that miR-324-5p plays a role in synaptic refinement across development. Additionally, our data illustrate the importance of context in the study of miRNA, as regulation by and/or of miRNA can vary dramatically across development and in disease.
Phase State, Surface Tension, Water Activity, and Accommodation Coefficient of Water–Organic Clusters Near the Critical Size for Atmospheric New Particle Formation

Interactions between water and organic molecules in sub-4 nm clusters play a significant role in the formation and growth of secondary organic aerosol (SOA) particles. However, a complete understanding of the relevant water microphysics has not yet been achieved due to challenges in the experimental characterization of soft nuclei. Here, we use molecular dynamics simulations to study the phase-mixing states, surface tension, water activity, and water accommodation coefficient of organic–water clusters representative of freshly nucleated SOA particles. Our results reveal large deviations from the behavior expected based on continuum theories. In particular, the phase-mixing state has a strong dependence on cluster size; surface tension displays a minimum at a specific organic–water mass ratio (morg/mw ∼ 4.5 in this study) corresponding to a minimum inhibition of droplet nucleation associated with the Kelvin effect; and the water accommodation coefficient increases by a factor of 2 with nanocluster hygroscopic growth, in agreement with recent experimental studies. Overall, our results yield parametric relations for water microphysical properties in sub-4 nm clusters and provide insight into the role of water in the initial stages of SOA nucleation and growth.
Decreased GABA+ ratios referenced to creatine and phosphocreatine in the left dorsolateral prefrontal cortex of females of reproductive age with major depression

Background: It has been suggested that the dorsolateral prefrontal cortex (DLPFC), especially the left DLPFC, has an important role in the pathophysiology and the treatment of major depressive disorder (MDD); furthermore, the contributory and antidepressant role of γ-aminobutyric acid (GABA) is increasingly recognized. Given that most female patients with MDD are of reproductive age, we sought to assess in vivo baseline GABA levels in the left DLPFC among unmedicated females of reproductive age with depression. Methods: We compared healthy females and females with MDD. Both groups were of reproductive age. We confirmed absence of current or past psychiatric diagnosis among healthy controls or a current diagnosis of MDD via a structured interview. We measured GABA+ (including homocarnosine and macromolecules), referenced to creatine and phosphocreatine, via magnetic resonance spectroscopy using a 3 Tesla magnet. Results: We included 20 healthy controls and 13 participants with MDD. All participants were unmedicated at the time of the study. All females were scanned during the early follicular phase of the menstrual cycle. Levels of GABA+ in the left DLPFC were significantly lower among participants with MDD (median 0.08) than healthy controls (median 0.10; U = 66.0, p = 0.02, r = 0.41). Limitations: When we adjusted for fit error as a covariate, we lost statistical significance for left DLPFC GABA+. However, when we adjusted for signal-to-noise ratio, statistical significance was maintained. Conclusion: Our results suggest that GABA+ levels in the left DLPFC may vary by depression status and should be examined as a possible treatment target.
Bioactivation and reactivity research advances – 2022 year in review‡

Abstract With the 50th year mark since the launch of Drug Metabolism and Disposition journal, the field of drug metabolism and bioactivation has advanced exponentially in the past decades (Guengerich 2023). This has, in a major part, been due to the continued advances across the whole spectrum of applied technologies in hardware, software, machine learning (ML), and artificial intelligence (AI). LC–MS platforms continue to evolve to support key applications in the field, and automation is also improving the accuracy, precision, and throughput of these supporting assays. In addition, sample generation and processing is being aided by increased diversity and quality of reagents and bio-matrices so that what is being analyzed is more relevant and translatable. The application of in silico platforms (applied software, ML, and AI) is also making great strides, and in tandem with the more traditional approaches mentioned previously, is significantly advancing our understanding of bioactivation pathways and how these play a role in toxicity. All of this continues to allow the area of bioactivation to evolve in parallel with associated fields to help bring novel or improved medicines to patients with urgent or unmet needs. Shuai Wang and Cyrus Khojasteh, on behalf of the authors.
Costs and duration of orthodontic-surgical treatment with mandibular advancement surgery

Abstract Objectives The aim was to analyse the costs and duration of orthodontic-surgical treatment with mandibular advancement in the public health care sector in Finland. Materials The study was conducted as a retrospective registry study in a public district hospital on all nonsyndromic patients that were ethnic Finns and treated with full fixed appliances and mandibular advancement surgery in 2016–2020. Results The mean treatment duration of the included 45 patients was 28.1 months, including 18.9 months pre and 9.2 months postoperative orthodontics. The median number of visits was 27, including 17 visits before and 9 visits after surgery. The mean total treatment time was 14.5 h. The mean total direct costs per course of treatment were 7574 € to the municipality and 947 € to the patient. The costs positively correlated with the duration of the treatment (rho = 0.71, P = .000), but were not associated to gender or age of patient. The mean surgery time was 78 minutes, and significantly less with an experienced surgeon (P = .002). It was calculated that the mean minimum treatment costs would be 45% of the present total, achievable with a patient with optimum dental arches at the start of treatment. Limitations The major limitation of the study is the relatively small number of study subjects. Conclusion A 55% share of the costs is influenced by case- and operator-dependent factors. This indicates that the complexity and performance of the orthodontic phases of treatment are important determinants in the cost structure.
Glycated hemoglobin variability and the risk of cardiovascular events in patients with prediabetes and type 2 diabetes mellitus: A post‐hoc analysis of a prospective and multicenter study

High glycated hemoglobin (HbA1c) variability has been reported to be linked with cardiovascular events in type 2 diabetes patients. Only a few studies have been carried out on Asian patients. This study aimed to investigate the association of prediabetes and type 2 diabetes in Asian patients by performing a post‐hoc analysis of a multicenter, prospective, observational study.
Short form Conners’ Adult ADHD Rating Scales: Factor structure and measurement invariance by sex in emerging adults

ABSTRACT Introduction The short version of the Conners’ Adult ADHD Rating Scales (CAARS-S:S) is a self-report measure used to identify symptoms of Attention Deficit/Hyperactivity Disorder (ADHD) during adulthood. However, its psychometric properties specifically in emerging adults, or the transitional age group between adolescence and adulthood, remain understudied. This study aimed to validate the factor structure of the CAARS-S:S in a sample of emerging adults. Method The CAARS-S:S measure was completed by adults (n = 591) aged 18 to 29 located in English-speaking countries, including Australia, Canada and the United States. Confirmatory factor analysis was used to test a four-factor model of Inattention/Memory Problems, Hyperactivity/Restlessness, Impulsivity/Emotional Lability and Problems with Self-Concept, as well as the model’s invariance by sex. Sex was also included as a covariate in the model to examine differences in males’ and females’ scores on each factor. Results Overall, the four-factor structure fit the data and was invariant across males and females. All factors demonstrated high internal reliability (average ωt and α = .86). It was observed that males tended to score higher on Inattention/Memory Problems while females scored higher on Problems with Self-Concept. Conclusion This research establishes the psychometric properties of the CAARS-S:S, placing greater confidence in using it to screen for ADHD symptoms in emerging adults living in a Westernized cultural context. The detailed findings of this research, implications for the use of the CAARS-S:S in this age group and potential future directions for examining the properties of the measure are discussed.
MicroRNA-9-1 Attenuates Influenza A Virus Replication via Targeting Tankyrase 1

An unstable influenza genome leads to the virus resistance to antiviral drugs that target viral proteins. Thus, identification of host factors essential for virus replication may pave the way to develop novel antiviral therapies. In this study, we investigated the roles of the poly(ADP-ribose) polymerase enzyme, tankyrase 1 (TNKS1), and the endogenous small noncoding RNA, miR-9-1, in influenza A virus (IAV) infection. Increased expression of TNKS1 was observed in IAV-infected human lung epithelial cells and mouse lungs. TNKS1 knockdown by RNA interference repressed influenza viral replication. A screen using TNKS1 3′-untranslation region (3′-UTR) reporter assays and predicted microRNAs identified that miR-9-1 targeted TNKS1. Overexpression of miR-9-1 reduced influenza viral replication in lung epithelial cells as measured by viral mRNA and protein levels as well as virus production. miR-9-1 induced type I interferon production and enhanced the phosphorylation of STAT1 in cell culture. The ectopic expression of miR-9-1 in the lungs of mice by using an adenoviral viral vector enhanced type I interferon response, inhibited viral replication, and reduced susceptibility to IAV infection. Our results indicate that miR-9-1 is an anti-influenza microRNA that targets TNKS1 and enhances cellular antiviral state.
Neurobehavioral measures of coincidence anticipation timing

Coincidence anticipation (CA) refers to the ability to coordinate responses to the arrival of a moving object. This study investigates the neurobehavioral processes that underlie CA through the measurement of electroencephalography (EEG) recorded during a CA task on a 17-foot plastic rail with evenly spaced LED lights. Participants responded at the anticipated moment a sequence of successively lit LEDs coincided with a stationary target. Healthy young adult participants (Mage = 21) performed six blocks with movement at 20, 30, or 40 mph and the direction either inbound or outbound relative to the participant. Behavioral results demonstrated a main effect of speed and an interaction between speed and direction, with outbound motion producing early responses and inbound motion producing delayed responses that increased at greater speeds. EEG demonstrated characteristic P1, N2, and P3-like visual evoked potentials (VEPs). VEP amplitudes revealed a significant direction by channel interaction for the P1, indicative of more medial responses for inbound motion. Significant laterality differences were present in the N2, whereas the P3 component produced significant main effects and interactions of speed and direction. This novel combination of three-dimensional CA with EEG demonstrates systematic brain responses that are tuned for motion speed and sensitive to different egocentric motion patterns thereby shedding new light on the mechanism of human visual-motor control.
Increased serum activin A level in congenital heart disease‐associated pulmonary artery hypertension: A comparative study from the COHARD‐PH registry

Abstract Activin A, a member of TGF‐β superfamily, has been implicated in the pathogenesis of pulmonary artery hypertension (PAH). PAH due to congenital heart disease (CHD‐PAH) is a major problem in developing countries. Activin A may have a role in PAH development and progression among uncorrected CHD. In this comparative study, serum activin A level was significantly increased in subjects with uncorrected CHD without the presence of PH and were more significantly risen in CHD‐PAH, as compared to control. The utilization of serum activin A measurement seems promising to identify uncorrected CHD patients with PAH development and progression.
Response of vegetation to temperature and precipitation in Xinjiang during the period of 1998-2009

In this paper, 10-day spatio-temporal response of vegetation to the change of temperature and precipitation in spring, summer, autumn and whole year during the period of 1998―2009 was analyzed based on the data of SPOT VEGETATION-NDVI and 10-day average temperature or precipitation from 54 meteorological stations in Xinjiang. The results show that the response of 10-day NDVI to temperature was more significant than that to precipitation, and the maximal response of vegetation to temperature and precipitation lagged for two 10-day periods. Seasonally, the effect of temperature and precipitation on vegetation NDVI was most marked in autumn, then in spring, and it was not significant in summer. The response of vegetation to 10-day change of meteorological factors was positive with a long affecting duration in spring, and it had a relatively short affecting duration in autumn and summer. Spatially, the 10-day maximal response of NDVI to temperature in northern Xinjiang was higher than that in southern Xinjiang. The correlation between the 10-day NDVI in whole year and the temperature in the 0-8 10-day period was significantly higher than that between the annual NDVI and the annual temperature at all meteorological stations; the interannual change of NDVI was accordant well with the change of annual precipitation. However, the effect of precipitation within a year on NDVI was not strong. The results indicated that interannual change of temperature was not the dominant factor affecting the change of vegetation NDVI in Xinjiang, but the decrease of annual precipitation was the main factor resulting in the fluctuation of vegetation coverage. Ten-day average temperature was an important factor to promote vegetation growth in Xinjiang within a year, but the effect of precipitation on vegetation growth within a year was not strong.
ULDP-FL: Federated Learning with Across Silo User-Level Differential Privacy

Differentially Private Federated Learning (DP-FL) has garnered attention as a collaborative machine learning approach that ensures formal privacy. Most DP-FL approaches ensure DP at the record-level within each silo for cross-silo FL. However, a single user's data may extend across multiple silos, and the desired user-level DP guarantee for such a setting remains unknown. In this study, we present Uldp-FL, a novel FL framework designed to guarantee user-level DP in cross-silo FL where a single user's data may belong to multiple silos. Our proposed algorithm directly ensures user-level DP through per-user weighted clipping, departing from group-privacy approaches. We provide a theoretical analysis of the algorithm's privacy and utility. Additionally, we enhance the utility of the proposed algorithm with an enhanced weighting strategy based on user record distribution and design a novel private protocol that ensures no additional information is revealed to the silos and the server. Experiments on real-world datasets show substantial improvements in our methods in privacy-utility trade-offs under user-level DP compared to baseline methods. To the best of our knowledge, our work is the first FL framework that effectively provides user-level DP in the general cross-silo FL setting.
Layer-wise Feedback Propagation

In this paper, we present Layer-wise Feedback Propagation (LFP), a novel training approach for neural-network-like predictors that utilizes explainability, specifically Layer-wise Relevance Propagation(LRP), to assign rewards to individual connections based on their respective contributions to solving a given task. This differs from traditional gradient descent, which updates parameters towards anestimated loss minimum. LFP distributes a reward signal throughout the model without the need for gradient computations. It then strengthens structures that receive positive feedback while reducingthe influence of structures that receive negative feedback. We establish the convergence of LFP theoretically and empirically, and demonstrate its effectiveness in achieving comparable performance to gradient descent on various models and datasets. Notably, LFP overcomes certain limitations associated with gradient-based methods, such as reliance on meaningful derivatives. We further investigate how the different LRP-rules can be extended to LFP, what their effects are on training, as well as potential applications, such as training models with no meaningful derivatives, e.g., step-function activated Spiking Neural Networks (SNNs), or for transfer learning, to efficiently utilize existing knowledge.