Miracle-dz/UniFAR-FTUs huggingface dataset:
The nitric oxide pathway in pulmonary arterial hypertension: pathomechanism, biomarkers and drug targets.

The altered nitric oxide (NO) pathway in the pulmonary endothelium leads to increased vascular smooth muscle tone and vascular remodelling, and thus contributes to the development and progression of pulmonary arterial hypertension (PAH). The pulmonary NO signalling is abrogated by the decreased expression and dysfunction of the endothelial NO synthase (eNOS) and the accumulation of factors blocking eNOS functionality. The NO deficiency of the pulmonary vasculature can be assessed by detecting nitric oxide in the exhaled breath or measuring the degradation products of NO (nitrite, nitrate, S-nitrosothiol) in blood or urine. These non-invasive biomarkers mightshow potential to correlate with changesin pulmonary haemodynamics and predict response to therapies. Current pharmacological therapies aim to stimulate pulmonary NO signalling by suppressing the degradation of NO (phosphodiesterase5 inhibitors) or increasing the formation of the endothelial cyclic guanosine monophosphate, which mediates the downstream effects of the pathway (soluble guanylate cyclase sensitizers). Recent data support that nitrite compounds and dietary supplements rich in nitrate might increase pulmonary NO availability and lessen vascular resistance. This review summarizes current knowledge on the involvement of the NO pathway in the pathomechanism of PAH, explores novel and easy-to-detect biomarkers of the pulmonary NO.
Control of plant frequency on an environmental gradient: effects of abiotic variables, neighbours, and predators on Poa pratensis and Poa compressa (Gramineae)

Effects of abiotic variables, neighbours, and predators on seedling establishment and tiller production of two perennial grasses (Poa pratensis L. and Poa compressa L.) were determined on a topographic gradient in an abandoned pasture. Seeds and plants of each species were added to experimental plots set up both at the top (ridges) and bottoms (hollows) of hills. Seedling establishment and tiller number per plant were each compared where seeds (or plants) were exposed to abiotic variables with and without the presence of neighbours and (or) predators. For P. pratensis, which occurred naturally more often in hollows than on ridges, abiotic variation appeared to be most important in controlling its frequency on the gradient. Tiller production was significantly lower on ridges than in hollows where plants were exposed only to abiotic variables (i.e., neighbours removed and predators excluded). For P. compressa, which occurred naturally less often in hollows than on ridges, greater suppression of seedling eme.
Lineage‐specific differentiation of osteogenic progenitors from pluripotent stem cells reveals the FGF1‐RUNX2 association in neural crest‐derived osteoprogenitors

Human pluripotent stem cells (hPSCs) can provide a platform to model bone organogenesis and disease. To reflect the developmental process of the human skeleton, hPSC differentiation methods should include osteogenic progenitors (OPs) arising from three distinct embryonic lineages: the paraxial mesoderm, lateral plate mesoderm, and neural crest. Although OP differentiation protocols have been developed, the lineage from which they are derived, as well as characterization of their genetic and molecular differences, has not been well reported. Therefore, to generate lineage‐specific OPs from human embryonic stem cells and human induced pluripotent stem cells, we employed stepwise differentiation of paraxial mesoderm‐like cells, lateral plate mesoderm‐like cells, and neural crest‐like cells toward their respective OP subpopulation. Successful differentiation, confirmed through gene expression and in vivo assays, permitted the identification of transcriptomic signatures of all three cell populations. We also report, for the first time, high FGF1 levels in neural crest‐derived OPs—a notable finding given the critical role of fibroblast growth factors (FGFs) in osteogenesis and mineral homeostasis. Our results indicate that FGF1 influences RUNX2 levels, with concomitant changes in ERK1/2 signaling. Overall, our study further validates hPSCs' power to model bone development and disease and reveals new, potentially important pathways influencing these processes.
Examining Safety of Biocolourants from Fungal and Plant Sources-Examples from Cortinarius and Tapinella, Salix and Tanacetum spp. and Dyed Woollen Fabrics

Biocolourants have been investigated as alternatives to synthetic dyes. However, natural origin per se is not a label of harmlessness and research is needed to obtain safe dyes. We studied the cytotoxicity of the extracts from fungal (Cortinarius semisanguineus, Tapinella atrotomentosa) and plant (Tanacetum vulgare, Salix phylicifolia) sources and the woollen fabrics dyed with the extracts. Cytotoxicity in vitro using hepa-1 mouse hepatoma cells for 24 h and 72 h exposure was observed as the highest tolerated dose. All biocolourants produced intensive colour on fabrics with fastness properties from moderate to good. The Salix and Cortinarius samples did not show any cytotoxic effects, whereas the Tanacetum and Tapinella samples had slightly higher test values but were not interpreted as being significantly toxic. Higher than zero values of the undyed fabrics showed the importance of examining their toxicity as well. It was found that the cytotoxicity of the samples dyed with the biocolourants did not differ significantly from the undyed wool fabric. The concentrations of dyes used in the assays were very low, imitating the dose of the user. In addition to colouring properties, natural dyes may have pharmaceutical and antibacterial properties which would enhance the interest in using them in products for added value.
Growth Rate Responses of Lotic Periphytic Diatoms to Experimental Phosphorus Enrichment: The Influence of Temperature and Light

Phosphate enrichment experiments were conducted year-round at the experimental troughs research apparatus (EXTRA) on the South Thompson River in British Columbia to determine the relationship between external concentration of orthophosphate and the growth rates of lotic periphytic diatom communities. Growth rate saturation always occurred at a phosphate concentration of approximately 0.3–0.6 μg P∙L−1. The maximum growth rate (μmax-P) with phosphorus enrichment varied seasonally with temperature. The relative specific growth rates (μ:μmax-P) as a function of external phosphate were constant. Seasonal changes in solar insolation (PAR) had no effect on the autotrophic community growth rates in unamended river water. Temperature exerted the most dominant influence on phosphorus-replete growth rates.
IMPLICATIONS OF SPATIAL HETEROGENEITY FOR CATASTROPHIC REGIME SHIFTS IN ECOSYSTEMS

Although alternative stable states are commonly found in simple models, it seems reasonable to assume that the response of real ecosystems to environmental change should often be smoothed by spatial heterogeneity and other stabilizing mechanisms. Here, we systematically explore the effect of spatial heterogeneity on regime shifts for three different models, which we run on a one-dimensional lattice with different spatial distributions of an environmental factor (e.g., soil fertility, water level). If dispersion between patches is negligible, the response to gradual change in some overall stressor (e.g., precipitation, nutrient load) is straightforward. Because of the environmental heterogeneity, each patch shifts to the other stable state at different values of the overall control variable. Therefore, the response of the ecosystem as a whole is gradual (i.e., the average of many asynchronous small shifts) instead of catastrophic. However, in response to a reverse change in the global stressor, the system always shows hysteresis, as each individual patch shifts back to the original state at a different value of the control parameter than the critical threshold for the forward shift. If dispersion between patches occurs, the response to change in the overall control parameter becomes dependent on the spatial pattern of environmental heterogeneity. If the environmental parameter is randomly distributed in space, the overall response tends to remain surprisingly catastrophic, and hysteresis is hardly reduced as compared to the homogeneous case. By contrast, in a smooth environmental gradient, the response of the overall system is gradual, and hysteresis is much smaller. In fact, hysteresis is largely reduced to the initial phases, in which none of the patches have shifted to the alternative state yet. As soon as the first patch shifts, a domino effect occurs, pushing over the neighboring patches. In conclusion, our results suggest that spatial heterogeneity may weaken the tendency for large-scale catastrophic regime shifts if dispersion is unimportant or if local environmental characteristics vary along a smooth gradient.
Spontaneous restoration of functional β-cell mass in obese SM/J mice

Maintenance of functional β-cell mass is critical to preventing diabetes, but the physiological mechanisms that cause β-cell populations to thrive or fail in the context of obesity are unknown. High fat-fed SM/J mice spontaneously transition from hyperglycemic-obese to normoglycemic-obese with age, providing a unique opportunity to study β-cell adaptation. Here, we characterize insulin homeostasis, islet morphology, and β-cell function during SM/J’s diabetic remission. As they resolve hyperglycemia, obese SM/J mice dramatically increase circulating and pancreatic insulin levels while improving insulin sensitivity. Immunostaining of pancreatic sections reveals that obese SM/J mice selectively increase β-cell mass but not α-cell mass. Obese SM/J mice do not show elevated β-cell mitotic index, but rather elevated α-cell mitotic index. Functional assessment of isolated islets reveals that obese SM/J mice increase glucose stimulated insulin secretion, decrease basal insulin secretion, and increase islet insulin content. These results establish that β-cell mass expansion and improved β-cell function underlie the resolution of hyperglycemia, indicating that obese SM/J mice are a valuable tool for exploring how functional β-cell mass can be recovered in the context of obesity.
Hirsutism

Hirsutism is a distressing and relatively common problem, affecting 5 to 10% of women in the reproductive age group. It is usually a sign of androgen excess, the commonest cause being the polycystic ovarian syndrome (PCOS). Diagnosis depends mainly on assessment of the clinical symptoms and laboratory values of various hormones. Antiandrogens combined with various cosmetic therapies form the mainstay of treatment.
Population suppression of Bemisia tabaci (Hemiptera: Aleyrodidae) using yellow sticky traps and Eretmocerus nr. rajasthanicus (Hymenoptera: Aphelinidae) on tomato plants in greenhouses

We conducted three experiments for management of Bemisia tabaci (Gennadius) biotype ‘B’ on tomatoes under greenhouse conditions: (i) vertically placing yellow sticky cards either parallel or perpendicular to tomato rows at a rate of 1 per 3‐m row; (ii) releasing Eretmocerus sp. nr. rajasthanicus once at 30 adults/m2 in the high whitefly density greenhouses (> 10 adults/plant), or twice at 15 adults/m2 at a 5‐day interval in the low whitefly density greenhouses (< 10 adults/plant); and (iii) using combinations of yellow sticky cards that were placed vertically parallel to tomato rows and parasitoids released once at 30/m2 in high whitefly density greenhouses or twice at 15/m2 at a 5‐day interval in low whitefly density greenhouses. Our data show that yellow sticky cards trapped B. tabaci adults and significantly reduced whitefly populations on tomato. The yellow sticky cards that were placed parallel to tomato rows caught significantly more whitefly adults than those placed perpendicular to tomato rows on every sampling date. In the treatment where parasitoids were released once at 30/m2 in high whitefly density greenhouses, the number of live whitefly nymphs were reduced from 4.6/leaf to 2.9/leaf in 40 days as compared with those on untreated plants on which live whitefly nymphs increased from 4.4/leaf to 8.9/leaf. In the treatment where parasitoids were released twice at 15/m2 in low whitefly density greenhouses, the numbers of live nymphs of B. tabaci on tomato leaves were reduced from 2.1/leaf to 1.7/leaf in 20 days as compared with those on untreated plants on which numbers of live nymphs of B. tabaci increased from 2.2/leaf to 4.5/leaf. In the treatment of yellow sticky cards and parasitoid release once at 30/m2 in high whitefly density greenhouses, the numbers of live nymphs of B. tabaci on tomato leaves were reduced from 7.2/leaf to 1.9/leaf, and in the treatment of yellow sticky cards and parasitoid release twice at 15/m2 at a 5‐day interval at low whitefly density, the numbers of live nymphs of B. tabaci on tomato leaves were reduced from 2.5/leaf to 0.8/leaf; whereas the numbers of live nymphs of B. tabaci on untreated plants increased from 4.4/leaf to 8.9/leaf. An integrated program for management of B. tabaci on greenhouse vegetables by using yellow sticky cards, parasitoids and biorational insecticides is discussed.
Diet of Zonocerus variegatus (Linné, 1758) (Orth., Acrididae) in cassava fields in Bénin

Abstract: This paper presents the results of a study on the diet of Zonocerus variegatus in cassava agro‐ecosystems at Allada, south Benin. The diet was determined by the analysis of plant fragments in the faeces of insects sampled in the fields. The grasshoppers studied consumed 21 plant species among the 81 found in the fields. Cassava, maize, Mallotus oppositifolius and Chromolaena odorata were the major food plants for Z. variegatus in this system. The presence of Z. variegatus in different fields was observed depending on the season and the presence of certain plant species. There was no relationship between plant frequency in the diet and in the field. Cassava was the preferred food resource for mature nymphs and adults. During the dry season, young nymphs stayed near the hatching sites and where good food resources were available. At this time, the grasshoppers were present in a field where cassava was not abundant but where maize and weeds were available. During the dry season, Z. variegatus had a broader diet than during the wet season. This contradicts the current hypothesis that the water content of plants and the floral diversity determines food preference. The dry season is also the time when C. odorata leaves were found in the faeces of both adults and nymphs. These observations made in West Africa are similar to those made in Central Africa, particularly for the number of plant species found in the faeces, 21 (26% of all plant species found in the fields) in Bénin and 17 (23%) in the Congo. The increase of the sample size and the great differences between the ecoregional situation of the study sites do not substantially change the number of plant species included in the diets. In the area covered by this study, C. odorata is not the major substitute for cassava during the dry season, although it remains a major food source and an especially visible food resource.
Intake and discharge nutrient loads at three intensive shrimp farms

This study was conducted to help provide a framework for Australian regulation of shrimp farm siting and discharges. Monitoring of farm water usage, and intake and discharge water quality was conducted at three commercial intensive shrimp farms, chosen to represent different operating environments, latitudes, cultured species and management styles. Weekly samples were taken over 3 years, for 3–12 months at each farm, to investigate intake and discharge concentrations and loads of total suspended solids (TSS), total nitrogen (TN) and total phosphorus (TP). Mean water exchange was 1.4 ML ha−1 day−1 (about 10% day−1) at the first farm studied and 0.5 ML ha−1 day−1 (about 3.6% day−1) at the others. Farm mean discharge concentration varied as follows: TSS, from 36.9 to 119 mg L−1; TN, from 2.1 to 3.1 mg L−1 and TP, from 0.22 to 0.28 mg L−1. Farm mean intake concentrations were from 11% to 91% of equivalent mean discharge concentration (for TN at Farm B and TSS at Farm C respectively). Mean net discharge loads, related to area of production ponds at each farm, varied as follows: TSS, from 4.8 to 85.7 kg ha−1 day−1; TN, from 1 to 1.8 kg ha−1 day−1 and TP, from 0.11 to 0.22 kg ha−1 day−1. The highest net loads of TSS, TN and TP were all from the farm with the highest water exchange rate, located on a coastal river, and studied during a year of high rainfall with associated poor water quality. These results can be used to help predict likely discharge characteristics for new shrimp farms, and provide a benchmark against which to evaluate future improvements in shrimp farm environmental management.
Gbx2 Identifies Two Amacrine Cell Subtypes with Distinct Molecular, Morphological, and Physiological Properties

Our understanding of how the nervous sytem works is limited by our ability to identify the neuronal subtypes that comprise functional circuits. Using a genetic approach, we show that the transcription factor Gbx2 labels two amacrine cell (AC) subtypes in the mouse retina that have distinct morphological, physiological, and molecular properties. One subtype of Gbx2+ ACs are likely the previously characterized On-type GABAergic CRH-1 AC. The other Gbx2+ AC population is a previously uncharacterized non-GABAergic, non-Glycinergic (nGnG) AC subtype. Gbx2+ nGnG ACs are On-Off type cells with asymmetric dendritic arbors. Gbx2+ nGnG ACs also exhibit tracer coupling to bipolar cells (BCs) through gap junctions that are modulated by dopamine signaling. This study genetically identifies a previously uncharacterized AC subtype and reveals an unusual AC-BC connectivity through gap junctions that may provide a novel model of synaptic communication and visual circuit function.
SPECIAL SERIES: LOCOREGIONAL MANAGEMENT OF BREAST CANCER

In the patient with newly diagnosed breast cancer (BC), imaging is used to enable, facilitate, or enhance every aspect of locoregional management. This includes mapping disease extent to guide surgery of the BC, monitoring response of BC to guide neoadjuvant chemotherapy, and guiding management of axillary lymph nodes. In this review, we provide a summary of the evidence regarding the current and future use of imaging to support decision making by the patient and by team members from surgical, radiation, and medical oncology.
Nutrients balances and milk fatty acid profile of mid lactation dairy cows supplemented with monensin

The aim of this study was to evaluate the nutrients balance and milk fatty acids profile of dairy cows supplemented with monensin. Twelve Brazilian Holstein dairy cows were distributed into four balanced 3x3 Latin squares, and fed with the following diets: control (C), basal diet without addition of monensin, monensin 24 (M24), addition of 24mg/kg DM of monensin, and monensin 48 (M48), addition of 48mg/kg DM. The experimental diets influenced the efficiency of net energy of lactation utilization. A quadratic effect was observed for the energy balance. It was observed effect of diets on nitrogen balance. It was observed effect of monensin in the milk yield, composition and in the milk fatty acids profile. Monensin in diets of dairy cows in mid lactation, using corn silage, improved the nutrients balance and milk fatty acid profile with 24mg/kg DM.
Proteasome Inhibitors as a Possible Therapy for SARS-CoV-2

The COVID-19 global pandemic is caused by SARS-CoV-2, and represents an urgent medical and social issue. Unfortunately, there is still not a single proven effective drug available, and therefore, current therapeutic guidelines recommend supportive care including oxygen administration and treatment with antibiotics. Recently, patients have been also treated with off-label therapies which comprise antiretrovirals, anti-inflammatory compounds, antiparasitic agents and plasma from convalescent patients, all with controversial results. The ubiquitin–proteasome system (UPS) is important for the maintenance of cellular homeostasis, and plays a pivotal role in viral replication processes. In this review, we discuss several aspects of the UPS and the effects of its inhibition with particular regard to the life cycle of the coronaviruses (CoVs). In fact, proteasome inhibition by various chemical compounds, such as MG132, epoxomycin and bortezomib, may reduce the virus entry into the eucariotic cell, the synthesis of RNA, and the subsequent protein expression necessary for CoVs. Importantly, since UPS inhibitors reduce the cytokine storm associated with various inflammatory conditions, it is reasonable to assume that they might be repurposed for SARS-CoV-2, thus providing an additional tool to counteract both virus replication as well as its most deleterious consequences triggered by abnormal immunological response.
Morphogenetic and toxin composition variability of Alexandrium tamarense (Dinophyceae) from the east coast of Russia

T.Y. Orlova, M.S. Selina, E.L. Lilly, D.M. Kulis and D.M. Anderson. 2007. Morphogenetic and toxin composition variability of Alexandrium tamarense (Dinophyceae) from the east coast of Russia. Phycologia 46: 534–548. DOI: 10.2216/06-17.1 Twenty-seven clones were established from elongate Alexandrium sp. cysts collected in six regions along the Russian Pacific coast. All isolates were identified as Alexandrium tamarense via detailed epifluoresence microscopy of thecal plates. Morphological differences of both cultured and wild cells from the study regions mainly occurred in the shape of the cell (length/width ratio), degree of development of the sulcal list, and the shape of the posterior sulcal (S.p.) and second antapical (2″″) plates. Cells were divided into two cell types: ‘short’ (isodiametrical or wide) and ‘tall’. Each cell type exhibits specific features of tabulation, mainly the shape of the S.p. and 2″″ plates and was dominant in each particular region of the study. The short type, with a wide S.p. and reduced length in the dorsoventral 2″″ plates, was characteristic of A. tamarense from Primorye and southern Sakhalin Island. The tall cells, i.e., with cell length exceeding width, and having and elongate S.p. and dorsoventrally elongate 2″″ plates, prevailed in Avachinskaya Guba Inlet and in the Bering Sea. The differences reported here between the two types are within the range of morphological variability of A. tamarense sensu Balech, 1995. The D1–D2 fragment of the large subunit nuclear ribosomal DNA was analyzed for 24 clones. Alexandrium tamarense from the Russian Pacific coast compose three genetically distinct populations that correspond to the Japanese temperate Asian, eastern North American, and western North American ribotypes of the ‘tamarensis’ complex. The presence and distribution of eastern and western North American ribotypes along the Russian Pacific coast suggest that dispersion to the temperate Asian region occurred long ago via natural currents and processes, and not through human-mediated introductions, as has been proposed. No strict correlation was observed between different morphological types of cells and ribotypes. High-performance liquid chromatography toxin analyses showed that all isolates were toxic and demonstrated variability in toxin content and composition among different populations. These data document the significant and previously uncharacterized risk of shellfish contamination with paralytic shellfish poisoning toxins from blooms of A. tamarense in Russian marine waters.