Miracle-dz/UniFAR-FTUs huggingface dataset:
Human-Leopard Conflict: An Emerging Issue of North China Leopard Conservation in Tieqiaoshan Provincial Nature Reserve in Shanxi Province, China

Simple Summary One of the main conservation issues, both locally and globally, is the issue of human-wildlife conflict. Losses of livestock due to predation by carnivores such as leopards has become a common problem. Residents share negative attitudes toward leopards due to conflicts over the depredation of livestock. Using data obtained from League Cat Forest Department records, and standardized, structured and semi-structured questionnaires, we found that the north China leopard was in serious conflict with the locals, causing them personal economic losses. Residents noted that the species was very dangerous to their livestock, causing them economic loss, and wanted to reduce or even eliminate it from their area. Abstract Livestock depredation by large carnivores is a conventional human–wildlife conflict, both at the local and regional level. Many species of wildlife have become endangered because of this conflict. In this study, an investigation of livestock depredation was conducted for the north China leopard in and around Tieqiaoshan Provincial Nature Reserve in Shanxi Province between 2015 and 2018. Data were obtained from League Cat Forest Department records. Additionally, standardized, structured, and semi-structured questionnaires were used to collect data with the help of reserve field staff. The results show that there was a significant difference (p = 0.015) in livestock depredation in various seasons of the year; the highest depredation was recorded in spring, followed by summer. A significant difference (p = 0.02) was observed between cattle and other livestock species, showing that more cattle were killed by the north China leopard. Most of the livestock depredation occurred during late morning and evening, likely because the leopards are crepuscular. Residents in and around the reserve suffered a high economic loss, ranging between RMB 5000 and 10,000 (USD 706.76–1413.53) per year in terms of the estimated market price of the killed livestock. The attitudes of residents towards the north China leopard vary according to the economic activities of the locals, with about 76% of the livestock keepers reporting that the leopard is “very dangerous” and 8% of the arable farmers in and around the reserve indicating that leopard is “very dangerous. ” We recommend that a system with local participants would ensure more effective management of human-north China leopard conflict, as it would allow local communities to take greater responsibility.
Comparison of DNA extraction methods for human oral microbiome research.

The oral micro biome is highly diverse and its composition is associated with oral disease and potentially diseases at other sites. Our objective is to evaluate DNA extraction methods potentially suitable for population-based investigations on the oral human microbiome and disease risk. Six commonly used microbial DNA extraction kits, employing either enzymatic methods or mechanical bead beating for cell lysis, were evaluated for the following aspects total DNA yield and quality and 16s rRNA DNA product and representation of microbial diversity. All analyses were carried out using a pooled and homogenized sample from one study subject. 16s rRNA gene sequence data were processed using the QIIME pipeline. One way ANOVA and Kruskal-Wallis tests were used to compare the different DNA extraction methods. We found that enzymatic extraction kits produced higher human genomic DNA, compared with mechanical extraction kits, however, phylogenic diversity in oral microbiome community structure from 16s rRNA gene sequence reads revealed no important differences between kit types. Enzymatic and mechanical bead beating kits provide alternative approaches for DNA extraction of oral microbiome DNA from oral wash samples. Greater total DNA yields are found in enzymatic approaches but microbial diversity can be similarly well characterized by either enzymatic or mechanical bead beating approaches. Original Research Article British Journal of Medicine & Medical Research, 4(10): 1980-1991, 2014 1981
A Multidisciplinary Review of the Roles of Cripto in the Scientific Literature Through a Bibliometric Analysis of its Biological Roles

Cripto is a small glycosylphosphatidylinisitol (GPI)-anchored and secreted oncofetal protein that plays important roles in regulating normal physiological processes, including stem cell differentiation, embryonal development, and tissue growth and remodeling, as well as pathological processes such as tumor initiation and progression. Cripto functions as a co-receptor for TGF-β ligands such as Nodal, GDF1, and GDF3. Soluble and secreted forms of Cripto also exhibit growth factor-like activity and activate SRC/MAPK/PI3K/AKT pathways. Glucose-Regulated Protein 78 kDa (GRP78) binds Cripto at the cell surface and has been shown to be required for Cripto signaling via both TGF-β and SRC/MAPK/PI3K/AKT pathways. To provide a comprehensive overview of the scientific literature related to Cripto, we performed, for the first time, a bibliometric analysis of the biological roles of Cripto as reported in the scientific literature covering the last 10 years. We present different fields of knowledge in comprehensive areas of research on Cripto, ranging from basic to translational research, using a keyword-driven approach. Our ultimate aim is to aid the scientific community in conducting targeted research by identifying areas where research has been conducted so far and, perhaps more importantly, where critical knowledge is still missing.
Disappearing act: COVID-19 and paediatric emergency department attendances

A 73%–88% reduction in paediatric emergency department (PED) presentations has been reported during the severe acute respiratory syndrome coronavirus 2 (SARS-2-CoV-2) pandemic.1 The magnitude of this decrease suggests that a combination of biological, psychological and social factors influence the decisions of families to attend PED. Our hospital is the busiest PED in Ireland, with ~55 000 emergency department (ED) attendances/year. Ireland‘s first SAR-2-CoV-2 case was reported on 29 February; schools/childcare facilities were closed on 12 March; and a stay-at-home order was issued on 27 March. As of 18 May, only 402 of the 24 036 total cases of SARS-CoV-2 in Ireland were children aged <14 years (1.6%), with 36 hospitalised, 2 requiring intensive care unit care and no reported deaths in children. A single-centre retrospective review of presentations for March and April 2018, 2019 and 2020, covering the three phases of the national response, …
Multifunctional magnetite nanoparticles to enable delivery of siRNA for the potential treatment of Alzheimer’s

Abstract Therapeutic drugs for Alzheimer’s disease have been extensively studied due to its recurrence and abundance among neurodegenerative diseases. It is thought that the accumulation of amyloid precursor protein (APP) products, a consequence of an up-regulation of the β-site APP-cleaving enzyme 1 (BACE1), is the main triggering mechanism during the early stages of the disease. This study aims to explore the ability of a multifunctional conjugate based on magnetite nanoparticles for the cellular delivery of siRNA against the expression of the BACE1 gene. We immobilized the siRNA strand on PEGylated magnetite nanoparticles and investigated the effects on biocompatibility and efficacy of the conjugation. Similarly, we co-immobilized the translocating protein OmpA on PEGylated nanoparticles to enhance cellular uptake and endosomal escape. BACE1 suppression was statistically significant in HFF-1 cells, without any presence of a cytotoxic effect. The delivery of the nanoconjugate was achieved through endocytosis pathways, where endosome formation was likely escaped due to the proton-sponge effect characteristic of PEGylated nanoparticles or mainly by direct translocation in the case of OmpA/PEGylated nanoparticles.
Electronic structure and anisotropic compression of Os2B3 to 358 GPa

High pressure study on ultra-hard transition-metal boride Os2B3 was carried out in a diamond anvil cell under isothermal and non-hydrostatic compression with platinum as an x-ray pressure standard. The ambient-pressure hexagonal phase of Os2B3 is found to be stable with a volume compression V/V0 = 0.670 ± 0.009 at the maximum pressure of 358 ± 7 GPa. Anisotropic compression behavior is observed in Os2B3 to the highest pressure, with the c-axis being the least compressible. The measured equation of state using the 3rd-order Birch–Murnaghan fit reveals a bulk modulus K0 = 397 GPa and its first pressure derivative K0′ = 4.0. The experimental lattice parameters and bulk modulus at ambient conditions also agree well with our density-functional-theory (DFT) calculations within an error margin of ∼1%. DFT results indicate that Os2B3 becomes more ductile under compression, with a strong anisotropy in the axial bulk modulus persisting to the highest pressure. DFT further enables the studies of charge distribution and electronic structure at high pressure. The pressure-enhanced electron density and repulsion along the Os and B bonds result in a high incompressibility along the crystal c-axis. Our work helps to elucidate the fundamental properties of Os2B3 under ultrahigh pressure for potential applications in extreme environments.
Clinical Outcomes following Endoscopic Treatment for Sporadic Nonampullary Duodenal Adenoma

Background and Aims: Endoscopic treatment for duodenal neoplasms is associated with a high risk of perforation. This study aimed to determine the feasibility of endoscopic treatment for sporadic nonampullary duodenal adenoma (SNDA). Methods: Consecutive patients undergoing endoscopic treatment for SNDA between January 2005 and December 2015 were included in the study. Clinical characteristics and endoscopic outcomes were analyzed using medical records. Long-term outcome was assessed in patients whose follow-up period was >12 months >1 year. Results: A total of 95 lesions (92 patients) were treated with argon plasma coagulation (APC) ablation (n = 25), endoscopic mucosal resection (EMR, n = 59), or endoscopic submucosal dissection (ESD, n= 11). The median age was 54.9 years, and 63% were male. In patients who underwent EMR and ESD, the en bloc resection rate was 83.1 and 90.0% (p > 0.99); and the complete resection rate was 81.4 and 80% (p > 0.99), respectively. Perforation occurred in 8 patients (8.7%), 4 of whom required surgery. The ESD group showed a significantly higher perforation rate than APC or EMR group (45.5 vs. 0 and 5.1%; p < 0.001). During the median follow-up period of 19 months (range 12–137 months), one patient in the APC ablation group experienced recurrence; no recurrences were seen among EMR and ESD groups. Conclusions: Favorable long-term outcomes indicate that endoscopic treatment is an effective approach for the treatment of SNDA. Considering the high risk of perforation associated with ESD, APC, or EMR may be an acceptable alternative.
Cross-Reactivity of Palladium in a Murine Model of Metal-induced Allergic Contact Dermatitis

Metal allergy is usually diagnosed by patch testing, however, the results do not necessarily reflect the clinical symptoms because of cross-reactivity between different metals. In this study, we established the novel mouse model of cross-reactive metal allergy, and aimed to elucidate the immune response in terms of T-cell receptor repertoire. This model was classified into two groups: the sensitization to nickel and challenge with palladium group, and the sensitization to chromium and challenge with palladium group. This model developed spongiotic edema with intra- and peri-epithelial infiltration of CD4+ T cells in the inflamed skin that resembles human contact dermatitis. Using T cell receptor analysis, we detected a high proportion of T cells bearing Trav8d-1-Traj49 and Trav5-1-Traj37 in the Ni- and Cr-sensitized Pd-challenged mice. Furthermore, mucosal-associated invariant T cells and invariant natural killer T cells were also detected. Our results indicated that T cells bearing Trav8d-1-Traj49 and Trav5-1-Traj37 induced the development of palladium-cross reactive allergy, and that mucosal-associated invariant T and invariant natural killer T cells were also involved in the cross-reactivity between different metals.
Characterization of nontypeable Actinobacillus pleuropneumoniae isolates

Two Actinobacillus pleuropneumoniae isolates from clinical cases of porcine pleuropneumonia in Japan were positive in the capsular serovar 15–specific PCR assay, but nontypeable (NT) in the agar gel precipitation (AGP) test. Nucleotide sequence analysis of gene clusters involved in the biosynthesis of capsular polysaccharide (CPS) and lipopolysaccharide O-polysaccharide (O-PS) revealed that both clusters contained transposable element ISApl1 of A. pleuropneumoniae belonging to the IS30 family. Immunoblot analysis revealed that these 2 isolates could not produce O-PS. We conclude that the ISApl1 of A. pleuropneumoniae can interfere in the biosynthesis of both CPS and O-PS.
Heart failure with preserved ejection fraction: an update on pathophysiology, diagnosis, treatment, and prognosis

Heart failure (HF) with preserved ejection fraction (HFpEF) is a clinical syndrome in which patients have symptoms and signs of HF with normal or near-normal left ventricular ejection fraction (LVEF ≥50%). Roughly half of all patients with HF worldwide have an LVEF ≥50% and nearly half have an LVEF <50%. Thanks to the increased scientific attention about the condition and improved characterization and diagnostic tools, the incidence of HF with reduced ejection fraction (HFrEF) dropped while that of HFpEF has increased by 45%. HFpEF has no single guideline for diagnosis or treatment, the patient population is heterogeneously and inconsistently described, and longitudinal studies are lacking. To better understand and overcome the disease, in this review, we updated the latest knowledge of HFpEF pathophysiology, introduced the existing promising diagnostic methods and treatments, and summarized its prognosis by reviewing the most recent cohort studies.
Uncoupling the effects of shade and food resources of vegetation on Mediterranean ants: an experimental approach at the community level

Vegetation is one of the main factors affecting the composition and structure of ant communities. The effect of vegetation is both by offering food resources and by modifying the proportion of ground cover exposed to shade conditions. However, it is difficult in field studies to uncouple the effects of food resources and shade on animal communities. The goal of this study was to analyze experimentally the effects of vegetation through food and shade supply on the structure and composition of a Mediterranean ant community. We have crossed these two factors in a factorial design where we have eliminated vegetation in experimental treatments and we have simulated the effects of vegetation by manipulating separately the supply of food resources and shade. The expected decrease in ant abundance and richness in plots without food resources but with shade was only partially confirmed by the results, because there was a decrease in the number of ant species but not a significant decrease in overall ant abundance in plots without food resources. We did not confirm the second hypothesis that the decrease in shade while maintaining food resources resulted in an increase of heat-tolerant, subordinate species and, consequently, ant richness. Species composition differed in the different experimental treatments. Stress-tolerant species were abundant in areas without shade and without food resources. Heat-tolerant species were mainly present in plots without shade but with food resources. Finally, species with high requirements of shade and/or food resources were associated to control plots with both shade and food resources from vegetation. Overall, this study provides an experiment that uncouples experimentally shade and food resources and dissects their effects on the whole ant community, and shows that the effects of the two factors are independent and affect different components of ant community structure and composition.
Mentha piperita L. Micropropagation and the Potential Influence of Plant Growth Regulators on Volatile Organic Compound Composition

Due to the industrial use of Mentha piperita L. (peppermint), it is important to develop an optimal method to obtain standardized plant material with specific quality parameters. In vitro cultures may allow the production of desirable odor-active compounds (OACs) and improve their share in the plant aroma profile. There are two types of explants that are commonly used, apical meristems and nodal segments. In this study, the best overall effects were shown to be produced by the combination of MS medium with the addition of 0.5 mg·dm−3 indolyl-3-butyric acid. In this case, a very high degree of rooting was found (97% for apical meristems, 100% for nodal meristems), lateral shoots were induced in 83% of both types of explant, and the content of OACs in the plant aroma profile increased significantly, especially menthofurolactone and cis-carvone oxide, responsible in this case for a characteristic mint-like aroma. The comparison of the volatile organic compounds (VOCs) obtained from plants of different origin by GC-MS showed no significant differences in their qualitative composition. Moreover, in-vitro-cultivated peppermint on a medium containing 0.5 mg·dm−3 2-isopentinloadenine and 0.1 mg·dm−3 indolyl-3-acetic acid showed significant amounts of menthofurolactone in its VOC composition.
Quiet FLAIR at 7T MRI

Objective The aim of this study was to investigate acoustic noise reduction and image quality of cranial magnetic resonance imaging (MRI) at 7T MRI with and without sequence-based acoustic noise reduction. Materials and Methods Fifteen patients and 5 healthy volunteers underwent 7T MRI scanning. A fluid-attenuated inversion recovery (FLAIR) sequence was acquired with and without sequence-based acoustic noise reduction. The acoustic noise generated by each sequence was measured. Quantitative and qualitative assessments regarding signal-to-noise ratio, contrast-to-noise ratio, lesion conspicuity, level of artifacts, and overall image quality were performed. Furthermore, detection rates of white matter lesions were evaluated by 2 observers for both sequences. Results Acoustic noise was significantly reduced from initially 92.7 dB(A) to 78.9 dB(A), corresponding to an 80% reduction in sound pressure. The visual assessment revealed no significant difference in the level of artifacts. Although rated very high by both readers, lesion conspicuity and image quality averaged better for the regular FLAIR sequence. Signal-to-noise ratio and contrast-to-noise ratio slightly decreased when applying the sequence-based acoustic noise reduction. No significant difference was found between the detection rates of white matter lesions for both observers. Conclusions Reducing sound pressure by 80% in FLAIR imaging at 7T ultra-high-field MRI is feasible while maintaining high diagnostic image quality.
Carbon sequestration and zooplankton lunar cycles: Could we be missing a major component of the biological pump?

The plankton outburst during the so‐called late winter bloom in subtropical waters was studied in relation to lunar illumination in the Canary Island waters. Nutrient enrichment by mixing and dust deposition promoted a bloom of phyto‐ and zooplankton. Mesozooplankton biomass increased as the winter mixing progressed but peaked in every full moon and decreased thereafter because of the effect of predation by interzonal diel vertical migrants (DVMs). The pattern was similar to the one described in lakes due to predation by fishes and confirms that this phenomenon is important in the sea. The estimated consumption and subsequent transport of epipelagic zooplankton biomass by DVMs after every full moon is on the order of the mean gravitational export and is an unaccounted flux of carbon to the mesopelagic zone that may play a pivotal role in the efficiency of the biological pump.
Response of early-maturing sunflower hybrids to row spacing and plant density.

Two early-maturing sunflower hybrids, Sunwheat 101 and MRS 34, with shorter than normal height and a narrower growth habit were grown at 30- and 60-cm row spacings and three plant densities at each row spacing in the 1986 and 1987 seasons at Morden, Manitoba. There were no differences in achene yield or oil content between row spacings. Plant height and oil content of achenes increased with increase in plant density, while achene weight decreased. Achene yield of both hybrids increased as plant density increased from 55 000 to the 74 000 plants ha−1 density, then remained relatively constant to 148 000 plants ha−1.Key words: Oilseed sunflower, Helianthus annuus L. , plant row spacing, plant density
Estimating detection and density of the Andean cat in the high Andes

Abstract The Andean cat (Leopardus jacobita) is one of the most endangered, yet least known, felids. Although the Andean cat is considered at risk of extinction, rigorous quantitative population studies are lacking. Because physical observations of the Andean cat are difficult to make in the wild, we used a camera-trapping array to photo-capture individuals. The survey was conducted in northwestern Argentina at an elevation of approximately 4,200 m during October–December 2006 and April–June 2007. In each year we deployed 22 pairs of camera traps, which were strategically placed. To estimate detection probability and density we applied models for spatial capture–recapture using a Bayesian framework. Estimated densities were 0.07 and 0.12 individual/km2 for 2006 and 2007, respectively. Mean baseline detection probability was estimated at 0.07. By comparison, densities of the Pampas cat (Leopardus colocolo), another poorly known felid that shares its habitat with the Andean cat, were estimated at 0.74–0.79 individual/km2 in the same study area for 2006 and 2007, and its detection probability was estimated at 0.02. Despite having greater detectability, the Andean cat is rarer in the study region than the Pampas cat. Properly accounting for the detection probability is important in making reliable estimates of density, a key parameter in conservation and management decisions for any species.