Miracle-dz/UniFAR-FTUs huggingface dataset:
Degradation of Great Tit (Parus Major) Song Before And After Foliation: Implications for Vocal Communication in a Deciduous Forest

Songbirds living in temperate forests experience great seasonal changes in habitat acoustics during the part of the breeding season when singing activity is high. These changes, which are brought about by accelerated vegetation growth and leaf burst in spring, affect sound propagation and potentially render vocal communication more difficult as the total number of scattering and absorbing obstacles increases. We investigated this in a sound transmission experiment in which representative great tit ( Parus major ) songs were broadcast in a typical forest habitat before and after foliation. Speaker and microphone were placed at natural separation distances and in typical sender and receiver positions. For each song note we quantified several aspects of sound degradation and found that they all increased considerably when leaves were present. Before foliation the same amount of degradation would only be obtained by doubling the transmission distance, i.e. foliage shortens the active space of great tit song. This inevitably alters distance information, provided that distance-dependent, structural changes of received songs are used as ranging cues. Moreover, sender and receiver positions within the canopy become unfavourable compared to heights just below the canopy when the aim is to maximise song propagation distances. Altogether, the presence of foliage greatly affects the potential for vocal information transfer in great tits and requires behavioural and/or perceptual adjustment of the communicating individuals to counteract or reduce the impact of foliage on signal degradation.
Role of Serum Carcinoma Embryonic Antigen (CEA) Level in Localized Pancreatic Adenocarcinoma: CEA Level Before Operation is a Significant Prognostic Indicator in Patients With Locally Advanced Pancreatic Cancer Treated With Neoadjuvant Therapy Followed by Surgical Resection

Objective: The aim of the study was to identify the prognostic factors before neoadjuvant chemoradiotherapy (NCRT) in the patients with localized PDAC. Furthermore, to identify the post-surgical survival predictors of patients with LAPC. Summary of background data: Surgical resection may occupy an important position in multimodal therapy for patients with LAPC; however, its indication and who obtains the true benefits, is still uncovered. Materials and Method: From 2005 to 2017, 319 patients with localized PDAC who underwent NCRT were reviewed. Only 159 patients were diagnosed with LAPC, of these 72 patients underwent surgical resection. We examined the pre-NCRT prognostic factors in the entire cohort and conducted further subgroup analysis for evaluating the post-surgical prognostic factors in LAPC patients under the pretext of favorable local tumor control. Results: In the entire cohort, pre-NCRT CEA value was recognized as the most significant prognostic indicator by multivariate analysis. In the 72 LAPC patients who underwent surgical resection, only high CEA level was identified as an independent dismal prognostic factor before surgery. At the cut-off value: 7.2ng/mL, survival of the 15 patients whose CEA value >7.2 ng/mL was significantly unfavorable compared to those of 57 patients with <7.2 ng/mL: Median disease-specific survival time: 8.0 versus 24.0 months (P < 0.00001). Moreover, the median recurrence-free survival time of the high CEA group was only 5.4 months and there was no 1-year recurrence-free survivor. Conclusions: CEA before NCRT is a crucial prognostic indicator for localized PDAC. Moreover, LAPC with a high CEA level, especially more than 7.2 ng/mL, should still be recognized as a systemic disease, and we should be careful to decide the indication of surgery even if tumor local control seems to be durable.
A method for obtaining plastid pigments from the biomass of Chlorella microalgae

Microalgae are distinguished from land plants by the high content of plastid pigments and the biodiversity of carotenoids. The aim of this study is to develop a technology for extracting a pigment complex from the biomass of the microalgae of the genus Chlorella and to determine the extracted pigments’ composition. To obtain biomass, a crude cell suspension of microalgae was used, which was obtained under laboratory conditions for pre-culture cultivation of C. sorokiniana (strain 211-8k). The extraction of plastid pigments from air-dry biomass after disintegration of cell membrane was performed in the 40 kHz mode. It was found that the highest pigment content in ethanol extracts was observed after 30 min (870.0 ± 27.1 mg L) at 45−50 °C. The pigments’ composition in the resulting total extracts was determined by spectrophotometry and the Reverse Phase HPLC method. The established content of chlorophyll a in the obtained extracts was 537.5 ± 10.0 mg L, the content of chlorophyll b was 182.5 ± 27.5 mg L; the maximum output of the amount of carotenoids in extracts was 150.0 ± 10.0 mg L. Thus, the main identified forms of carotenoids in extracts from the biomass of microalgae C. sorokiniana were xanthophylls: lutein and fucoxanthin (18.6 and 4.7% of the amount of pigment in extract, respectively) and β-carotene (1.8% of the amount of pigment). It is planned to further fractionate the obtained total extracts of the pigment complex to obtain various forms of chlorophylls and carotenoids to study the spectrum of physiological activity of plastid pigments.
Chemical Variation and Pharmacological Properties of Dyssodia decipiens Essential Oil

Dyssodia decipiens is one of the seven recognized species within the Dyssodia genus, which has economic and social relevance in Mexico. Herein, we report on the volatile characterization and pharmacological activity of D. decipiens. The essential oils (2017–2019) contained verbenone (30.8–60.9 %), limonene (5.6–35.5 %), β‐caryophyllene (7.8–19.8 %) and linalool (4.5–12.4 %) as major constituents along the studied years. Antifungal properties were probed on Candida albicans ATCC 90028, ATCC 10231 (fluconazole resistant) and five clinical isolates (IS1–IS5). Flower essential oils had the best anti‐C. albicans activity (MIC 59.2–93.5 μg mL−1), and limonene (MIC 125.5–188.4 μg mL−1) and β‐caryophyllene (MIC 104.3–184.2 μg mL−1) were involved in this effect. SEM examination revealed that D. decipiens essential oils produced an evident lysis on the fungus. Mosquito repellent activity was demonstrated on Aedes aegypti, a vector of dengue, chikungunya and zika viruses. The repellent activity of leaf essential oils (20 %) was effective within 1–5 h post‐treatment (>90 %) and it was stronger (p<0.01) than that of commercial DEET. The evaluation of the four major volatiles (10 % each) produced similar results to those of essential oils. Finally, leaf essential oils showed a moderate antiproliferative activity on the lines OVCAR‐3 (LD50 56.5–85.7 μg mL−1), and verbenone (LD50 65.3 μg mL−1) and β‐caryophyllene (LD50 43.6 μg mL−1) were linked to this effect.
The genus Chlamydotheca Saussure (Crustacea: Ostracoda) in northeastern Argentina

The genus Chlamydotheca Saussure, 1858 is a typical representative of the Neotropical ostracod fauna that occupies lotic and lentic environments including temporary and permanent ponds. Up to the present, four species have been recorded in Argentina: C. iheringi (Sars), C. incisa (Claus) and C. leuckarti (Claus), and C. symmetrica (Vavra). Temporary and permanent ponds of this region were sampled for ostracods, using a fine mesh net. Three species belonging to the genus Chlamydotheca were collected of which C. arcuata (Sars) is recorded for first time for the Chacoan region. Limb morphology was studied under light microscope and line drawings were made using camera lucida. Valves were photographed under scanning electron microscope and redescriptions of C. arcuata and C. iheringi are provided and distributional aspects of the species sampled are discussed.
Supplementation with alpha-linolenic acid and inflammation: a feasibility trial

Abstract Consumption of omega-3 fatty acids, including the precursor α-linolenic acid (ALA) is often sub-optimal and not in line with international guidelines. Supplementation is debatable, but some individuals, e.g., pre-diabetic, low-grade inflammation, cardiometabolic yet otherwise healthy subjects, might benefit from supra-physiological omega-3 intake, particularly to lessen inflammation. We explored the feasibility of a large clinical trial by performing a pilot study to evaluate adherence, palatability, and self-reported side effects of ALA administration in a group of volunteers. We enrolled 12 individuals with borderline dyslipidemia or overweight, treated with dietary advice according to international guidelines and who had insufficient intakes of essential fatty acids. Subjects were followed for nutritional counselling and were matched with appropriate controls. Patients were administered 6 g/day of ALA, for two months. We report the absence of side effects. such as fishy aftertaste and gastrointestinal distress, in addition to a slight decrease of C-reactive protein concentrations (Identifier: ISRCTN13118704).
Traditional plain yogurt: a therapeutic food for metabolic syndrome?

Abstract Dairy products have an important role in a healthy diet due to their high-quality protein and rich micronutrients. Yogurt, a fermented milk product, has a similar composition to milk but is a more concentrated product in terms of group B vitamins, minerals, and proteins. It is known that bioactive metabolites and live enzymes that occur by fermentation and digestion, affect the health positively by improving gut microbiota. In recent years, the prevalence of metabolic syndrome, which threatens public health, is increasing rapidly. As with other noninfectious diseases, the diet has an important effect on the prevention and treatment of metabolic syndrome. It has been demonstrated that yogurt has a high-quality amino acid pattern, reduces energy intake by stimulating satiety, and regulates blood glucose level. In addition to the rich protein variety, yogurt also contains peptides that positively affect blood pressure. Unlike milk, increased acidity during the fermentation of yogurt positively affects calcium absorption. Calcium plays an important role in the control of blood glucose and energy metabolism through insulin-dependent and non-insulin-dependent routes. In addition to reducing inflammation, calcium has a positive effect on the regulation of the blood lipid profile by increasing fecal fat excretion. There are many lipid and lipoid nutrients such as saturated fatty acids, phospholipids, sphingolipids, and conjugated linoleic acid that may affect the blood lipid profile in yogurt positively or negatively. There are seen very few randomized controlled studies that are focused on the relationship between yogurt and metabolic syndrome, and these are based on contradictory results. In this review, based on the clinical studies conducted to date, and the nutrient content of yogurt, possible mechanisms of these contradictory results are investigated.
A Framework of a Lower Limb Musculoskeletal Model With Implemented Natural Proprioceptive Feedback and Its Progressive Evaluation

Objective: Proprioceptive senses play an important role in human body reflex and movement, so far implementing physiological mathematical models of proprioceptors in the musculoskeletal model and investigating their effects have not been sufficiently investigated. The purpose of the present study was to establish a compact framework for a lower limb musculoskeletal model by considering both ascending signals from central nervous system and descending feedback neural signal from physiologically realistic proprioceptors and evaluate it with progressive experimental data as well as investigating the effects of the proprioceptive feedback on the human movement. Methods: The simulation framework was established by combining a lower limb musculoskeletal model, the forward dynamic tool from OpenSim codes, and an executive program based on Python codes. The physiological mathematical models of the muscle spindle and Golgi tendon organs were included in the feedback control loop for the model. The model was evaluated through both previous literature data and currently implemented volunteer reflex experiments from the neural organ level to the monosynaptic reflex loop, and finally the complicated movement, such as the firing rate of the proprioceptors, the knee-jerk reflex, and the normal gait. Simultaneously, the effects of the proprioceptors on human normal gait were initially investigated. Results: The reliability of the framework was properly evaluated by comparing the experimental data of neural firing rate, electromyography signals, and joint kinematics. The gait analysis indicated that the introduction of the proprioceptors in the motor control loop can substantially resist the external disturbance. Conclusion: The established framework has been evaluated at different levels, and it can be extended and applied to different musculoskeletal models for human movement analysis and evaluate the effects of the proprioceptors on them.
Dissolving Cellulose in 1,2,3-Triazolium- and Imidazolium-Based Ionic Liquids with Aromatic Anions

We present 1,2,3-triazolium- and imidazolium-based ionic liquids (ILs) with aromatic anions as a new class of cellulose solvents. The two anions in our study, benzoate and salicylate, possess a lower basicity when compared to acetate and therefore should lead to a lower amount of N-heterocyclic carbenes (NHCs) in the ILs. We characterize their physicochemical properties and find that all of them are liquids at room temperature. By applying force field molecular dynamics (MD) simulations, we investigate the structure and dynamics of the liquids and find strong and long-lived hydrogen bonds, as well as significant π–π stacking between the aromatic anion and cation. Our ILs dissolve up to 8.5 wt. -% cellulose. Via NMR spectroscopy of the solution, we rule out chain degradation or derivatization, even after several weeks at elevated temperature. Based on our MD simulations, we estimate the enthalpy of solvation and derive a simple model for semi-quantitative prediction of cellulose solubility in ILs. With the help of Sankey diagrams, we illustrate the hydrogen bond network topology of the solutions, which is characterized by competing hydrogen bond donors and acceptors. The hydrogen bonds between cellulose and the anions possess average lifetimes in the nanosecond range, which is longer than found in common pure ILs.
Abdominal wall endometriosis versus desmoid tumor – a challenging differential diagnosis

Aim: Abdominal wall endometriosis (AWE) in young women, with previous gynecological abdominal surgery, is the first condition considered by many practitioners when a tumor in the region of the scar appears. AWE seems to be caused by an iatrogenic transfer of endometrial cells at the level of the scar. The onset of the disease may be late in many cases. Despite the fact that the disease could be totally asymptomatic, there are certain risk factors that can be identified during the anamnesis, such as: heredity, menarche at the age of >14 years, menstrual cycle <27 days, delayed menopause, excessive alcohol and caffeine consumption. Suggestive signs include cyclic or continuous abdominal pain caused by a palpable abdominal wall mass with a maximum tenderness in the region of the surgical scar. The differential diagnosis is complex and rare entities like desmoid tumors (DTs) must be taken into consideration. Desmoid tumor, or the so-called aggressive fibromatosis (AF), is a rare fibroblastic proliferation. This tumor can develop in any muscular aponeurotic structure of the body and is considered benign but with a high recurrence rate. DTs can cause local infiltration, subsequently producing certain levels of deformity and potential obstruction of vital structures and organs. The differential diagnosis is challenging in this situations, the imagery exams are useful, especially in detecting the precise location of the tumor. The histological examination of the tumor can state the final and precise diagnosis.
Joint recovery of high-dimensional signals from noisy and under-sampled measurements using fusion penalties

The presence of missing entries pose a hindrance to data analysis and interpretation. The missing entries may occur due to a variety of reasons such as sensor malfunction, limited acquisition time or unavailability of information. In this thesis, we present algorithms to analyze and complete data which contain several missing entries. We consider the recovery of a group of signals, given a few under-sampled and noisy measurements of each signal. This involves solving ill-posed inverse problems, since the number of available measurements are considerably fewer than the dimensionality of the signal that we aim to recover. In this work, we consider different data models to enable joint recovery of the signals from their measurements, as opposed to the independent recovery of each signal. This prior knowledge makes the inverse problems well-posed. While compressive sensing techniques have been proposed for low-rank or sparse models, such techniques have not been studied to the same extent for other models such as data appearing in clusters or lying on a low-dimensional manifold. In this work, we consider several data models arising in different applications, and present some theoretical guarantees for the joint reconstruction of the signals from few measurements. Our proposed techniques make use of fusion penalties, which are regularizers that promote solutions with similarity between certain pairs of signals. The first model that we consider is that of points lying on a low-dimensional manifold, embedded in high dimensional ambient space. This model is apt for describing a collection of signals, each of which is a function of only a few parameters; the manifold dimension is equal to the number of parameters. We propose a technique to recover a series of such signals, given a few measurements for each signal. We demonstrate this in the context of dynamic Magnetic Resonance Imaging (MRI) reconstruction, where only a few Fourier measurements are available for each time frame. A novel acquisition scheme enables us to detect the neighbours of each frame on the manifold.
TPX2 Promotes Metastasis and Serves as a Marker of Poor Prognosis in Non-Small Cell Lung Cancer

Background Metastasis contributes to the high mortality rate of non-small cell lung cancer (NSCLC), and gaining a better understanding of its metastatic mechanisms would aid in initiating effective clinical treatment. Material/Method In this study, bioinformatics analyses of the GEO database and TCGA-LUAD were first used to identify the key node gene regulating NSCLC malignant progression. Further in vitro experiments, including wound healing assay, invasion assay, Western blot assay, and luciferase report assay, were used to clarify the functions and mechanism of TPX2 in NSCLC. Results Results of the TCGA analysis showed that TPX2 was significantly positively correlated with tumor metastasis and growth and the clinical stage of NSCLC. In addition, high levels of TPX2 significantly indicated a poor survival rate. In vitro experimental results also revealed that the upregulation of TPX2 significantly promoted NSCLC cell migration and invasion and could affect cell replasticity. Further results indicated that TPX2 significantly activated the epithelial-mesenchymal transition process and promoted the expression and activities of matrix metalloproteinase (MMP)2 and MMP9. Conclusions This study demonstrated that TPX2 promotes the metastasis and malignant progression of NSCLC and could thus serve as a marker of poor prognosis in NSCLC.
Adsorption of cellulose by Trichoderma viride

Adsorption of cellulase by Trichoderma viride QM 9414 has been studied with resting and growing cells and equations have been derived to describe the process quantitatively. It has been observed that the adsorption is a purely physical process being dependent only on cell and cellulose concentrations. It has also been demonstrated that adsorption isrequired for the induction of cellulases; some discussions are devoted to this point.
Genomic alterations in chronic lymphocytic leukemia and their correlation with clinico-hematological parameters and disease progression

Background Chronic lymphocytic leukemia (CLL) is a heterogeneous disease, which is attributed to differences in the genetic characteristics of the leukemic clone. We studied the genomic profile of 52 treatment-naïve CLL patients. Methods Genetic analysis was performed by multiplex ligation-dependent probe amplification (MLPA) using the SALSA P038 Probemix (MRC Holland, Amsterdam), which contains probes for 2p (MYCN,ALK,REL), 6q, 8p (TNFRSF10A/B), 8q (EIF3H,MYC), 9p21 (CDKN2A/B), 10q (PTEN), 11q (ATM, RDX, PPP2R1B, CADM1), chromosome 12, 13q14 (RB1, DLEU1/2/7, KCNRG, MIR15A), 14q, 17p (TP53) and chromosome 19, and for NOTCH1 7541-7542delCT, SF3B1 K700E, and MYD88 L265P mutations. Results The median age was 65 years (malefemale=21). The median hemoglobin, total leuko- cyte, and platelet counts were 12.4 g/dL, 57.7×109/L, and 176.5×109/L, respectively. At least one genetic abnormality was observed in 34 (65%) patients. The most common abnormality was del(13q14) (deleted DLEU2 and DLEU1/RB1 genes), which was observed in 22 (42%) cases, followed by trisomy 12 [7 (13%) cases]. Del(11q) (deleted ATM, RDX11/PPP2R1B-4) and del(17p) (deleted TP53) were present in 5 (10%) and 2 (4%) cases, respectively. 19p13.2 (CDKN2D-2) amplification and NOTCH1 mutation were found in one case each. Conclusion Genetic abnormalities are commonly (65%) observed in CLL patients. Del(13q), which is associated with DLEU2 and DLEU1/RB1 gene deletion, was the most common. Compared with other abnormalities, del(11q) and del(17p) patients presented with cytopenia and higher Binet stage, while those with del(13q14) had a longer time to first treatment.
Cocoa-rich chocolate and body composition in postmenopausal women: a randomised clinical trial

Abstract During menopause, women undergo a series of physiological changes that include a redistribution of fat tissue. This study was designed to investigate the effect of adding 10 g of cocoa-rich chocolate to the habitual diet of postmenopausal women daily on body composition. We conducted a 6-month, two-arm randomised, controlled trial. Postmenopausal women (57·2 (sd 3·6) years, n 132) were recruited in primary care clinics. Participants in the control group (CG) did not receive any intervention. Those of the intervention group (IG) received 10 g daily of 99 % cocoa chocolate in addition to their habitual diet for 6 months. This quantity comprises 247 kJ (59 kcal) and 65·4 mg of polyphenols. The primary outcomes were the between-group differences in body composition variables, measured by impendancemetry at the end of the study. The main effect of the intervention showed a favourable reduction in the IG with respect to the CG in body fat mass (–0·63 kg (95 % CI –1·15, –0·11), P = 0·019; Cohen’s d = –0·450) and body fat percentage (–0·79 % (95 % CI –1·31, –0·26), P = 0·004; Cohen’s d = –0·539). A non-significant decrease was also observed in BMI (–0·20 kg/m2 (95 % CI –0·44, 0·03), P = 0·092; Cohen’s d = –0·345). Both the body fat mass and the body fat percentage showed a decrease in the IG for the three body segments analysed (trunk, arms and legs). Daily addition of 10 g of cocoa-rich chocolate to the habitual diet of postmenopausal women reduces their body fat mass and body fat percentage without modifying their weight.