Miracle-dz/UniFAR-FTUs huggingface dataset:
APPLYING RECURRENCE PLOTS TO IDENTIFY BORDERS BETWEEN TWO-PHASE FLOW PATTERNS IN VERTICAL CIRCULAR MINI CHANNEL

In the paper the method based on recurrence plots has been used for identification of two-phase flow in a vertical, circular mini- channel. The time series obtained from image analysis of high speed video have been used. The method proposed in the present study al- lows us to define the coefficients which characterize the dynamics of two-phase flow in a mini channel. To identify two-phase flow patterns in a mini channel there has been used the coefficient LAVG which is a measure of an average length of diagonal lines in recurrence plot. The following two-phase flow structures have been considered: bubbly, bubbly-slug and wavy-annular. Obtained results show that method proposed in the paper enables identification of borders between two two-phase flow patterns coexisting in a mini-channel.
Estimating Absolute Configurational Entropies of Macromolecules: The Minimally Coupled Subspace Approach

We develop a general minimally coupled subspace approach (MCSA) to compute absolute entropies of macromolecules, such as proteins, from computer generated canonical ensembles. Our approach overcomes limitations of current estimates such as the quasi-harmonic approximation which neglects non-linear and higher-order correlations as well as multi-minima characteristics of protein energy landscapes. Here, Full Correlation Analysis, adaptive kernel density estimation, and mutual information expansions are combined and high accuracy is demonstrated for a number of test systems ranging from alkanes to a 14 residue peptide. We further computed the configurational entropy for the full 67-residue cofactor of the TATA box binding protein illustrating that MCSA yields improved results also for large macromolecular systems.
GigaWalk: Interactive Walkthrough of Complex Environments

We present a new parallel algorithm and a system, GigaWalk, for interactive walkthrough of complex, gigabyte-sized environments. Our approach combines occlusion culling and levels-of-detail and uses two graphics pipelines with one or more processors. GigaWalk uses a unified scene graph representation for multiple acceleration techniques, and performs spatial clustering of geometry, conservative occlusion culling, and load-balancing between graphics pipelines and processors. GigaWalk has been used to render CAD environments composed of tens of millions of polygons at interactive rates on systems consisting of two graphics pipelines. Overall, our system's combination of levels-of-detail and occlusion culling techniques results in significant improvements in frame-rate over view-frustum culling or either single technique alone.
Topic grids for homogeneous data visualization

We propose the topic grids to detect anomaly and analyze the behavior based on the access log content. Content-based behavioral risk is quantified in the high dimensional space where the topics are generated from the log. The topics are being projected homogeneously into a space that is perception- and interaction-friendly to the human experts.
Equilibrium Contrast Cardiovascular Magnetic Resonance for the Measurement of Diffuse Myocardial Fibrosis: Preliminary Validation in Humans

Background— Diffuse myocardial fibrosis is a final end point in most cardiac diseases. It is missed by the cardiovascular magnetic resonance (CMR) late gadolinium enhancement technique. Currently, quantifying diffuse myocardial fibrosis requires invasive biopsy, with inherent risk and sampling error. We have developed a robust and noninvasive technique, equilibrium contrast CMR (EQ–CMR) to quantify diffuse fibrosis and have validated it against the current gold standard of surgical myocardial biopsy. Methods and Results— The 3 principles of EQ–CMR are a bolus of extracellular gadolinium contrast followed by continuous infusion to achieve equilibrium; a blood sample to measure blood volume of distribution (1−hematocrit); and CMR to measure pre- and postequilibrium T1 (with heart rate correction). The myocardial volume of distribution is calculated, reflecting diffuse myocardial fibrosis. Clinical validation occurred in patients undergoing aortic valve replacement for aortic stenosis or myectomy in hypertrophic cardiomyopathy (n=18 and n=8, respectively). Surgical biopsies were analyzed for picrosirius red fibrosis quantification on histology. The mean histological fibrosis was 20.5±11% in aortic stenosis and 17.1±7.4% in hypertrophic cardiomyopathy. EQ–CMR correlated strongly with biopsy histological fibrosis: aortic stenosis, r2=0.86, Kendall Tau coefficient (T)=0.71, P<0.001; hypertrophic cardiomyopathy, r2=0.62, T=0.52, P=0.08; combined r2=0.80, T=0.67, P<0.001. Conclusions— We have developed and validated a new technique, EQ–CMR, to measure diffuse myocardial fibrosis as an add-on to a standard CMR scan, which allows for the noninvasive quantification of the diffuse fibrosis burden in myocardial diseases.
Preliminary use of a double-flanged, fully covered, self-expandable, metal stent with cautery in endoscopic ultrasound-guided gastroenterostomy

New approaches to endoscopic ultrasound-guided gastroenterostomy (EUSGE) are under development, incorporating devices designed for transluminal therapy. Herein is the initial reported use of a novel, double-flanged, fully covered, self-expandable, metal stent with cautery, aimed at refining the EUS-GE procedure. A 43-year-old man was diagnosed with paraduodenal pancreatitis and walledoff necrosis (WON) due to biliary pancreatitis. He showed symptoms of gastric outlet obstruction (GOO), such as vomiting. Computed tomography (CT) images revealed a large cystic mass occupying the pancreatic head and a fully covered metal stent in the common bile duct, which was deployed previously for biliary pancreatitis (▶Fig. 1). Treatment was aimed at drainage of the infected WON and relief from the symptoms of GOO. EUS-guided drainage of the WON was achieved using a fully covered, double-flanged, metal stent as previously reported [1, 2]. After 15 days, the patient’s condition had stabilized sufficiently for EUS-GE to be performed (▶Video1). The patient was placed in the prone position for the procedure and given general E-Videos
Resistance against brute-force attacks on stateless forwarding in information centric networking

Line Speed Publish/Subscribe Inter-networking (LIPSIN) is one of the proposed forwarding mechanisms in Information Centric Networking (ICN). It is a stateless source-routing approach based on Bloom filters. However, it has been shown that LIPSIN is vulnerable to brute-force attacks which may lead to distributed denial-of-service (DDoS) attacks and unsolicited messages. In this work, we propose a new forwarding approach that maintains the advantages of Bloom filter based forwarding while allowing forwarding nodes to statelessly verify if packets have been previously authorized, thus preventing attacks on the forwarding mechanism. Analysis of the probability of attack, derived analytically, demonstrates that the technique is highly-resistant to brute-force attacks.
PowerSpy: fine-grained software energy profiling for mobile devices

Battery power capacity has shown very little growth, especially when compared with the exponential growths of CPU power, memory and disk space. Hence, battery power is frequently the most constraining resource on a mobile device. As a foundation for optimizing application energy usage on mobile devices, it is increasingly important to profile system-wide energy usage in order to accurately determine where the energy is going. Previous work on profiling energy usage has either required external hardware multimeters, provided coarse grain results or required modifications to the operating system or/and profiled application. We present PowerSpy, which tracks and reports the battery energy consumed by the different threads of a monitored application, the operating system, other applications in a multi-threaded environment along with I/O devices. Using PowerSpy, we are able to measure the power consumption of five diverse applications including a Web browser, VRML graphics browser, compiler and video player, all without requiring modification to the application's source code.
Vectorial targeting of an endogenous apical membrane sialoglycoprotein and uvomorulin in MDCK cells

We studied the cell-surface delivery pathways of newly synthesized membrane glycoproteins in MDCK cells and for this purpose we characterized an endogenous apical integral membrane glycoprotein. By combining a pulse-chase protocol with domain-selective cell-surface biotinylation, immune precipitation, and streptavidin-agarose precipitation (Le Bivic et al. 1989. Proc. Natl. Acad. Sci USA. 86:9313- 9317), we followed the appearance at the cell surface of a major apical sialoglycoprotein, gp114, a basolateral protein, uvomorulin, and a transcytosing protein, the polyimmunoglobulin receptor (pIg-R). We determined that both gp114 and uvomorulin appeared to be delivered directly to their respective surface, with mistargeting levels of 8 and 2%, respectively. Using the same technique, the pIg-R was first detected on the basolateral domain and then on the apical domain, to be finally released into the apical medium, as described (Mostov, K. E., and D. L. Deitcher. 1986. Cell. 46:613-621). To directly determine whether the gp114 pool present on the basolateral surface was a precursor of the apical gp114, we compared it with the equivalent pIg-R pool, by labeling with sulfo-NHS-SS-biotin, a cleavable, tight junction- impermeable probe, and by following the fraction of this probe that became resistant to basal glutathione and accessible to apical glutathione during incubation at 37 degrees C. We found that, contrary to pIg-R, basolateral gp114 was poorly endocytosed and was not transcytosed to the apical side. These results demonstrate that an endogenous apical integral membrane glycoprotein of Madin-Darby canine kidney cells is sorted intracellularly and is vectorially targeted to the apical surface.
utumn migratory orientation and displacement responses of two willow arbler subspecies ( Phylloscopus trochilus trochilus and P . t . acredula ) in South weden

Topography and historical range expansion has formed a so-called migratory divide between two subspecies of willow warbler (Phylloscopus trochilus) in central Scandinavia. The autumn migratory directions of individuals assigned molecularly to both subspecies and possible hybrids were recorded using orientation cage experiments in southwest and southeast Sweden. We found pronounced differences in willow warblers’ orientation in respect to genotype. The mean directions registered in the control experiments were in accordance with the ringing recoveries and analyses of stable isotopes for Scandinavian willow warblers. With the same individuals we performed displacement experiments between both sites. They resulted in non-significant orientation, which could be explained by the intermediate distance of the displacement or reactions to housing, transportation and location. On a separate set of birds we tested
Online minimization of transition systems (extended abstract)

We are given a transition system implicitly through a compact representation and wish to perform simultaneously reachability analysis and minimization without constructing first the whole system graph. We present an algorithm for this problem that applies to general systems, provided we have appropriate primitive operations for manipulating blocks of states and we can determine termination; the number of operations needed to construct the minimal reachable graph is quadratic in the size of this graph. We specialize the method to obtain efficient algorithms for extended finite state machines that apply separable affine transformations on the variables.
A neural-based minutiae pair identification method for touch-less fingerprint images

Contact-based sensors are the traditional devices used to capture fingerprint images in commercial and homeland security applications. Contact-less systems achieve the fingerprint capture by vision systems avoiding that users touch any parts of the biometric device. Typically, the finger is placed in the working area of an optics system coupled with a CCD module. The captured light pattern on the finger is related to the real ridges and valleys of the user fingertip, but the obtained images present important differences from the traditional fingerprint images. These differences are related to multiple factors such as light, focus, blur, and the color of the skin. Unfortunately, the identity comparison methods designed for fingerprint images captured with touch-based sensors do not obtain sufficient accuracy when are directly applied to touch-less images. Recent works show that multiple views analysis and 3D reconstruction can enhance the final biometric accuracy of such systems. In this paper we propose a new method for the identification of the minutiae pairs between two views of the same finger, an important step in the 3D reconstruction of the fingerprint template. The method is divisible in the sequent tasks: first, an image preprocessing step is performed; second, a set of candidate minutiae pairs is selected in the two images, then a list of candidate pairs is created; last, a set of local features centered around the two minutiae is produced and processed by a classifier based on a trained neural network. The output of the system is the list of the minutiae pairs present in the input images. Experiments show that the method is feasible and accurate in different light conditions and setup configurations.
Identification of Barley (Hordeum vulgare L.) Autophagy Genes and Their Expression Levels during Leaf Senescence, Chronic Nitrogen Limitation and in Response to Dark Exposure

Barley is a cereal of primary importance for forage and human nutrition, and is a useful model for wheat. Autophagy genes first described in yeast have been subsequently isolated in mammals and Arabidopsis thaliana. In Arabidopsis and maize it was recently shown that autophagy machinery participates in nitrogen remobilization for grain filling. In rice, autophagy is also important for nitrogen recycling at the vegetative stage. In this study, HvATGs, HvNBR1 and HvATI1 sequences were identified from bacterial artificial chromosome (BAC), complementary DNA (cDNA) and expressed sequence tag (EST) libraries. The gene models were subsequently determined from alignments between genome and transcript sequences. Essential amino acids were identified from the protein sequences in order to estimate their functionality. A total of twenty-four barley HvATG genes, one HvNBR1 gene and one HvATI1 gene were identified. Except for HvATG5, all the genomic sequences found completely matched their cDNA sequences. The HvATG5 gene sequence presents a gap that cannot be sequenced due to its high GC content. The HvATG5 coding DNA sequence (CDS), when over-expressed in the Arabidopsis atg5 mutant, complemented the plant phenotype. The HvATG transcript levels were increased globally by leaf senescence, nitrogen starvation and dark-treatment. The induction of HvATG5 during senescence was mainly observed in the flag leaves, while it remained surprisingly stable in the seedling leaves, irrespective of the leaf age during stress treatment.
"Genome design" model: evidence from conserved intronic sequence in human-mouse comparison.

Introns are shorter in housekeeping genes than in tissue- or development-specific genes. Differing explanations have been offered for this phenomenon: selection for economy (in housekeeping genes), mutation bias or "genomic design. " The large-scale implementation in this present paper of a rigorous local sequence alignment algorithm revealed an unprecedented fraction of evolutionarily conserved DNA in human-mouse introns ( approximately 60% of human and approximately 70% of mouse intron length remained after masking for lineage-specific repeats). The length distributions of both conserved and nonconserved regions are very broad but show peaks close to nucleosomal and di-nucleosomal DNA. Both the fraction of conserved sequence and its absolute length were higher in introns of tissue-specific genes than housekeeping genes. This difference remained after control for between-species identity of the conserved fraction, mutation rate, and GC content. In a more direct control, the product of the conserved sequence fraction and the between-species identity of this fraction (which can be considered to be the fraction of conserved nucleotides) was greater in introns of tissue-specific genes than housekeeping genes. Neither the fraction of intron length covered by repeats nor the balance of small insertions and deletions (indels) can explain the greater length of introns in tissue-specific genes. The length of the conserved intronic DNA in a gene is correlated with the number of functional domains in the protein encoded by that gene. These results suggest that the greater length of introns in tissue-specific genes is not due to selection for economy or mutation bias but instead is related to functional complexity (probably mediated by chromatin condensation), and that the evolution of the bulk of noncoding DNA is not completely neutral.
Adaptive Animation of Human Motion for E-Learning Applications

Human motion animation has been one of the major research topics in the field of computer graphics for decades. Techniques developed in this area help present human motions in various applications. This is crucial for enhancing the realism as well as promoting the user interest in the applications. To carry this merit to e-learning applications, we have developed efficient techniques for delivering human motion information over the Internet to collaborating e-learning users and revealing the motion information in the client machines with different rendering capability. Our method offers a mechanism to extract human motion data at various levels of detail (LoD). We also propose a set of importance factors to allow an e-learning system to determine the LoD of the human motion for rendering as well as transmission, according to the importance of the motion and the available network bandwidth. At the end of the paper, we demonstrate the effectiveness of the new method with some experimental results.
Characterization and Experimental Assessment of the Effects of Parasitic Elements on the MOSFET Switching Performance

This paper presents a comprehensive study on the influences of parasitic elements on the MOSFET switching performance. A circuit-level analytical model that takes MOSFET parasitic capacitances and inductances, circuit stray inductances, and reverse current of the freewheeling diode into consideration is given to evaluate the MOSFET switching characteristics. The equations derived for emulating MOSFET switching transients are assessed graphically, which, compared to results obtained merely from simulation or parametric study, can offer better insight into where the changes in switching performance lie when the parasitic elements are varied. The analysis has been successfully substantiated by the experimental results of a 400 V, 6 A test bench. A discussion on the physical meanings behind these parasitic effect phenomena is included. Knowledge about the effects of parasitic elements on the switching behavior serves as an important basis for the design guidelines of fast switching power converters.
Use of induced sputum cell counts to investigate airway inflammation in asthma.

BACKGROUND: Airway inflammation is considered to be important in asthma but is relatively inaccessible to study. Less invasive methods of obtaining sputum from patients unable to produce it spontaneously should provide a useful investigational tool in asthma. METHODS: A method to induce sputum with inhaled hypertonic saline was modified for use in 17 asthmatic patients and 17 normal subjects who could not produce sputum spontaneously. The success rate and safety of the method, the reproducibility of cell counts, and differences in cell counts between the asthmatic and normal groups were examined. Hypertonic saline solution 3-5% was inhaled for up to 30 minutes after inhalation of salbutamol. Subjects were asked to expectorate sputum every five minutes. The quality of the sample was scored on the volume of plugs and the extent of salivary contamination. Plugs from the lower respiratory tract were selected for a total cell count and for differential cell counts of eosinophils and metachromatic cells (mast cells and basophils) in direct smears. RESULTS: Adequate samples from the lower respiratory tract were obtained in 76% of first attempts. The mean fall in the forced expiratory volume in one second (FEV1) during inhalation of saline was 5.3% and the maximum fall 20%. Eosinophil and metachromatic cell counts were reproducible (reliability coefficient 0.8 and 0.7 respectively). When compared with sputum from normal subjects sputum from asthmatic patients contained a significantly higher proportion of eosinophils (mean 18.5% (SE 3.8%) v 1.9% (0.6%)) and metachromatic cells (0.50% (0.18%) v 0.039% (0.014%)). In the asthmatic group the differential eosinophil count correlated with the baseline FEV1. CONCLUSION: Induced sputum is capable of detecting differences in cell counts between normal and asthmatic subjects and merits further development as a potential means of assessing airway inflammation in asthma.
Multicarrier Spread Spectrum Modulation Schemes and Efficient FFT Algorithms for Cognitive Radio Systems

Spread spectrum (SS) and multicarrier modulation (MCM) techniques are recognized as potential candidates for the design of underlay and interweave cognitive radio (CR) systems, respectively. Direct Sequence Code Division Multiple Access (DS-CDMA) is a spread spectrum technique generally used in underlay CR systems. Orthogonal Frequency Division Multiplexing (OFDM) is the basic MCM technique, primarily used in interweave CR systems. There are other MCM schemes derived from OFDM technique, like Non-Contiguous OFDM, Spread OFDM, and OFDM-OQAM, which are more suitable for CR systems. Multicarrier Spread Spectrum Modulation (MCSSM) schemes like MC-CDMA, MC-DS-CDMA and SS-MC-CDMA, combine DS-CDMA and OFDM techniques in order to improve the CR system performance and adaptability. This article gives a detailed survey of the various spread spectrum and multicarrier modulation schemes proposed in the literature. Fast Fourier Transform (FFT) plays a vital role in all the multicarrier modulation techniques. The FFT part of the modem can be used for spectrum sensing. The performance of the FFT operator plays a crucial role in the overall performance of the system. Since the cognitive radio is an adaptive system, the FFT operator must also be adaptive for various input/output values, in order to save energy and time taken for execution. This article also includes the various efficient FFT algorithms proposed in the literature, which are suitable for CR systems.
Melting Pot XML: Bringing File Systems and Databases One Step Closer

Ever-growing data volumes demand for storage systems beyond current file systems abilities, particularly, a powerful querying capability. With the rise of XML, the database community has been challenged by semi-structured data processing, enhancing their field of activity. Since file systems are structured hierarchically they can be mapped to XML and as such stored in and queried by an XML-aware database. We provide an evaluation of a state-of-the-art XML-aware database implementing a file system.