Miracle-dz/UniFAR-FTUs huggingface dataset:
Further Advance of Gambierdiscus Species in the Canary Islands, with the First Report of Gambierdiscus belizeanus

Ciguatera Poisoning (CP) is a human food-borne poisoning that has been known since ancient times to be found mainly in tropical and subtropical areas, which occurs when fish or very rarely invertebrates contaminated with ciguatoxins (CTXs) are consumed. The genus of marine benthic dinoflagellates Gambierdiscus produces CTX precursors. The presence of Gambierdiscus species in a region is one indicator of CP risk. The Canary Islands (North Eastern Atlantic Ocean) is an area where CP cases have been reported since 2004. In the present study, samplings for Gambierdiscus cells were conducted in this area during 2016 and 2017. Gambierdiscus cells were isolated and identified as G. australes, G. excentricus, G. caribaeus, and G. belizeanus by molecular analysis. In this study, G. belizeanus is reported for the first time in the Canary Islands. Gambierdiscus isolates were cultured, and the CTX-like toxicity of forty-one strains was evaluated with the neuroblastoma cell-based assay (neuro-2a CBA). G. excentricus exhibited the highest CTX-like toxicity (9.5–2566.7 fg CTX1B equiv. cell−1) followed by G. australes (1.7–452.6.2 fg CTX1B equiv. cell−1). By contrast, the toxicity of G. belizeanus was low (5.6 fg CTX1B equiv. cell−1), and G. caribaeus did not exhibit CTX-like toxicity. In addition, for the G. belizeanus strain, the production of CTXs was evaluated with a colorimetric immunoassay and an electrochemical immunosensor resulting in G. belizeanus producing two types of CTX congeners (CTX1B and CTX3C series congeners) and can contribute to CP in the Canary Islands.
Terahertz Optical Bistability in the Metal Nanoparticles-Graphene Nanodisks-Quantum Dots Hybrid Systems

We theoretically investigate the optical bistability in the metal nanoparticles-graphene nanodisks-quantum dots hybrid plasmonic system in the infrared regime of the electromagnetic radiation. The quantum dot is considered to be a three-level atomic-like system of Λ type interacting with probe and control fields. By using the standard model of the optical bistability where a nonlinear medium is situated in an optical ring cavity, we numerically solve the equation of motion for the density matrix elements that describe the dynamics of the system in steady-state conditions along with the boundary conditions of the cavity to analyze the optical bistability of the system. The effect of the geometrical features of the system and the parameters of the interacting fields including the strength and detuning of the fields on the optical bistability behavior are investigated. Our proposed hybrid plasmonic system shows an ultralow-threshold controllable optical bistability, providing a promising platform for optical bistable devices at the terahertz, such as all-optical switches and biosensors.
Transcriptional regulation in the rat prefrontal cortex and hippocampus after a single administration of psilocybin

Background: Psilocybin is a serotonergic psychedelic found in “magic mushrooms” with a putative therapeutic potential for treatment-resistant depression, anxiety, obsessive-compulsive disorder, and addiction. In rodents, psilocybin acutely induces plasticity-related immediate early genes in cortical tissue; however, studies into the effects on subcortical regions, of different doses, and the subsequent translation of corresponding proteins are lacking. Methods: We examined the acute effects of a single administration of psilocybin (0.5–20 mg/kg) on the expression of selected genes in the prefrontal cortex and hippocampus. In total, 46 target genes and eight reference genes were assessed using real-time quantitative polymerase chain reaction. Corresponding protein levels of the three most commonly regulated genes were assessed using Western blotting. Results: In the prefrontal cortex, psilocybin increased the expression of Cebpb, c-Fos, Dups1, Fosb, Junb, Iκβ-α, Nr4a1, P11, Psd95, and Sgk1, and decreased the expression of Clk1. In the hippocampus, psilocybin strongly increased the expression of Arrdc2, Dusp1, Iκβ-α, and Sgk1 in a dose-dependent manner, and decreased the expression of Arc, Clk1, Egr2, and Ptgs2. Protein levels of Sgk1, Dusp1, and Iκβ-α showed only partial agreement with transcriptional patterns, stressing the importance of assessing downstream translation when investigating rapid gene responses. Conclusion: The present study demonstrates that psilocybin rapidly induces gene expression related to neuroplasticity, biased towards the prefrontal cortex, compared to the hippocampus. Our findings provide further evidence for the rapid plasticity-promoting effects of psilocybin.
SMP Production in an Anaerobic Submerged Membrane Bioreactor (AnMBR) at Different Organic Loading Rates

Anaerobic membrane bioreactors (AnMBRs) have demonstrated an excellent capability to treat domestic wastewater. However, biofouling reduces membrane permeability, increasing operational costs and overall energy demand. Soluble microbial products (SMPs) that build up on the membrane surface play a significant role in the biofouling. In this study, the production of SMPs in a 32 L submerged AnMBR operated at three different organic loads (3.0, 4.1 and 1.2 kg chemical oxygen demand (COD)/m3d for phases 1, 2 and 3, respectively) during long-term operation of the reactor (144, 83 and 94 days) were evaluated. The samples were taken from both the permeate and the sludge at three different heights (0.14, 0.44 and 0.75 m). Higher production of SMPs was obtained in phase 2, which was proportional to the membrane fouling. There were no statistically significant differences (p > 0.05) in the SMPs extracted from sludge at different heights among the three phases. In the permeate of phases 1, 2 and 3, the membrane allowed the removal of 56%, 70% and 64% of the SMP concentration in the sludge. SMPs were characterized by molecular weight (MW). A bimodal behavior was obtained, where fractions prevailed with an MW < 1 kDa, associated with SMPs as utilization-associated products (UAPs) caused fouling by the pore-blocking mechanism. The chemical analysis found that, in the SMPs, the unknown COD predominated over the known COD, such as carbohydrates and proteins. These results suggest that further studies in SMP characterization should focus on the unknown COD fraction to understand the membrane fouling in AnMBR systems better.
Acoustic signals and repertoire complexity in Swallow-tailed Manakins (Chiroxiphia caudata, Aves: Pipridae)

ABSTRACT Neotropical manakins (Pipridae) are well known for the male’s multimodal courtship displays including acoustic and visual signals. In these birds, acoustic signals are important for attracting females to display arenas, often located at hidden perches within the forest. Here, we describe the acoustic repertoire of Swallow-tailed Manakins (Chiroxiphia caudata), a bird species well known for displaying cooperatively, but for which the acoustic repertoire has not been well-documented. We recorded calls and behaviour of Swallow-tailed Manakins on three display courts in the Atlantic Forest, Brazil. We classified calls to test our repertoire designations using linear discriminant analysis and asked how different sounds mapped onto components of the cooperative display. Prior to the display, males coordinate sounds either in duets, as has been shown in congeners, or in choruses, which we report for the first time in Chiroxiphia. Males also produce three mechanical sounds, so far undescribed in this species, and 11 calls associated with seven behaviours. Particularly prominent was the wah call produced while displaying, which becomes increasingly fast toward the jump display’s end, possibly to stimulate females for copulation. Our study of the Swallow-tailed Manakin acoustic repertoire provides insights into specific signal categories females may assess as they attend male mating displays.
Correlation between emotional intelligence and negative emotions of front-line nurses during the COVID-19 epidemic: a cross-sectional study.

AIMS AND OBJECTIVES The purpose of this study was to understand the emotional intelligence level (EI) and negative emotional status of the front-line nurses in the epidemic situation and to further explore the relationship between them. BACKGROUND During the COVID-19 epidemic, under the influence of multiple factors, nurses were vulnerable to negative emotions. While previous studies have explored, the role of emotional intelligence in negative emotions, the relationship between the two has not been sufficiently discussed in the context of COVID-19. DESIGN The study carried out a cross-sectional survey. The STROBE was selected as the checklist in this study. METHODS 202 nurses from Wuhan makeshift hospital participated in the questionnaire survey. Data collection tools included a general data questionnaire designed by the researchers, Chinese version of EI scale (WLEIS-C) and Chinese version of depression-anxiety-stress scale (DASS-21). Descriptive statistics, single factor analysis, and correlation analysis were used to analyze the data. RESULTS The emotional intelligence of the front-line nurses was in the upper middle range. Among the negative emotions, anxiety was the most prominent symptom. CONCLUSIONS Managers should pay attention to the negative emotional problems of front-line nurses, improve their EI level and promote mental health and the progress of epidemic prevention. RELEVANCE TO CLINICAL PRACTICE Improving the level of emotional intelligence can reduce the frequency and intensity of negative emotions. In clinical work, emotional intelligence can be used as a skill to carry out relevant training, which is conducive to playing a positive role in future emergencies.
On the Playing Field to Improve: A Goal for Autism

In recent years, there has been a renewed attention to lifestyle-based interventions in people with autism spectrum disorder. The positive effects of physical exercise programs have been well documented both in healthy people and in people with disabilities in the fields of psychological well-being, cognitive outcome and medical health. There is much less evidence about the opportunity to attempt a team-group sport for people with autism. Although researchers seem to suggest an overall positive effect, playing team sports for people with autism spectrum disorder (ASD) means dealing with difficulties in social interactions and limitations in motor functions. This narrative review aims to report studies about the effects, improvements and difficulties that people with autism have to face when they play the world’s most popular team sport: soccer.
Impact on Prognosis of the Surgical Route, Laparoscopy or Laparotomy, for the Surgical Staging of Early Stage Ovarian Cancer—A Study from the FRANCOGYN Group

Background and objective: according to the latest ESMO−ESGO recommendations, laparotomy is the standard surgical approach to treat and stage patients with presumed early stage epithelial ovarian cancer (EOC). A few studies have investigated the efficacy and the safety of laparoscopy for the staging of early stage EOC, and this question is still in the center of debates. Recurrence-free survival (RFS) and overall survival (OS) benefits of the minimally invasive surgery (MIS) have still to be specified. The aim of this multicenter and retrospective study is to assess the survival outcomes of laparoscopic staging in comparison with laparotomic staging for patients presenting with an early stage EOC. Methods: data of patients with early stage EOC (FIGO I-IIA) who underwent primary surgery between 2000 and 2018 were extracted from the FRANCOGYN database. OS and RFS of these two groups, constituted according to the surgical route, were compared using Log rank test. Results: of the 144 patients included, 107 patients underwent laparotomy and 37 underwent laparoscopy for a staging purpose. The median follow-up was 36.0 months (18.0 to 58.0). For the laparoscopy and the laparotomy group, the median follow-up period was 24 (11.0 to 50.0) and 42.0 (24.0 to 66.0) months, respectively, (p < 0.001). Tumor recurrence occurred in 33 (23%) patients: 2 (5.4%) in the laparoscopy group and 31 (29%) in the laparotomy group (p = 0.08). The OS rate at 5 years was 97.3% after laparoscopy and 79.8% after laparotomy (p = 0.19). Conclusions: there is no difference associated with the laparoscopic approach for the staging of early stage EOC on RFS and OS in comparison with laparotomy. MIS may be proposed as a safe and adequate alternative to laparotomy when performed by well-trained surgeons.
Measuring Floodplain Inundation Using Diel Amplitude of Temperature

Assessment of inundation patterns across large and remote floodplains is challenging and costly. Inexpensive loggers that record the damping of the diel amplitude of temperature (DAT) when submerged compared to overlying air can indirectly indicate inundation. We assessed the efficacy of this approach in tropical, subtropical, and temperate floodplains by comparing direct water level measurements using pressure transducers with the indirect indication of inundation ascertained from the DAT at the same location. The approach worked better in tropical than in subtropical and temperate floodplains. However, the relatively small DATs of air in humid and densely vegetated settings made estimation of inundation more challenging compared to the drier and less vegetated settings, where a large diel range of air temperature was markedly damped beneath the water. The indirect temperature approach must be calibrated for a particular ecosystem using direct water-level measurements to define DAT thresholds that are indicative of submergence of the sensors. Temperature provides an inexpensive indicator of duration of inundation that can be particularly useful in studies of large and remote floodplains, although the development of inexpensive sensors that directly measure submergence (e.g., by resistivity) will likely become a better option in the future.
Facilitators and Barriers in the Organ Donation Process: A Qualitative Study among Nurse Transplant Coordinators

Background: Spain is the world leader in organ donation, with a rate of 49.0 donations per million population. Nurse transplant coordinators fulfill key roles for the success of the complex donation process. Our aims were: (a) to describe the experience of nurse transplant coordinators and (b) to identify barriers and facilitators during the process of organ donation. Methods: A qualitative phenomenological study was conducted within the National Transplant Organization. A purposive sampling method was used, and data collection methods included semistructured interviews, researcher field notes, and participants’ personal letters. A systematic text condensation analysis was performed. The study was approved by the Clinical Research Ethics Committee. Results: A total of 16 participants were recruited and four themes were identified: (a) a different job for nurses, (b) facilitators and barriers of the coordinator’s job, (c) not a job for a novice nurse, and (d) coordinators facing a paradigm shift. Coordinators described their job as being characterized with uncertainty and having to face emotional and institutional barriers. The facilitators identified were high educational level and training, and feelings of pride for being part of the National Transplant Organization. Conclusions: The organ donation process requires specialized training to avoid organizational barriers.
Effects of Pirfenidone and Nintedanib on Markers of Systemic Oxidative Stress and Inflammation in Patients with Idiopathic Pulmonary Fibrosis: A Preliminary Report

Introduction: In vitro evidence suggests that pirfenidone and nintedanib, approved agents for the treatment of idiopathic pulmonary fibrosis (IPF), exert anti-inflammatory and anti-oxidant effects. We aimed to investigate such effects in vivo in IPF patients. Methods: Systemic circulating markers of oxidative stress [nuclear factor erythroid 2–related factor 2 (Nrf2), thiobarbituric acid- reactive substances (TBARS), homocysteine (Hcy), cysteine (Cys), asymmetric dimethylarginine (ADMA) and ADMA/Arginine ratio, glutathione (GSH), plasma protein –SH (PSH), and taurine (Tau)] and inflammation [Kynurenine (Kyn), Tryptophan (Trp) and Kyn/Trp ratio] were measured at baseline and after 24-week treatment in 18 IPF patients (10 treated with pirfenidone and 8 with nintedanib) and in 18 age- and sex-matched healthy controls. Results: Compared to controls, IPF patients had significantly lower concentrations of reduced blood GSH (457 ± 73 µmol/L vs 880 ± 212 µmol/L, p < 0.001) and plasma PSH (4.24 ± 0.95 µmol/g prot vs 5.28 ± 1.35 µmol/g prot, p = 0.012). Pirfenidone treatment significantly decreased the Kyn/Trp ratio (0.030 ± 0.011 baseline vs 0.025 ± 0.010 post-treatment, p = 0.048) whilst nintedanib treatment significantly increased blood GSH (486 ± 70 μmol/L vs 723 ± 194 μmol/L, p = 0.006) and reduced ADMA concentrations (0.501 ± 0.094 vs. 0.468 ± 0.071 μmol/L, p = 0.024). Conclusion: pirfenidone and nintedanib exert beneficial effects on specific markers of oxidative stress and inflammation in IPF patients.
Finfish Diversity and Distribution in a Boreal, Macrotidal Bay

Abstract Cobscook Bay is an 11- km2 geographically complex, boreal, and macrotidal bay in eastern Maine. The physical environment, primary producers, and invertebrate assemblage of the bay are well-characterized, but no contemporary data exist on its finfish assemblage. We sampled the finfish assemblage of Cobscook Bay from 2011 to 2013 in May, June, August, and September to create a baseline dataset suitable for future comparisons. We also examined the composition, diversity, and annual changes in the assemblage. We sampled in the subtidal and intertidal zones using seines (n = 390), fyke nets (n = 72), and benthic (n = 112) and pelagic (n = 111) trawls; sampling was divided among the bay's 3 different sub-bays. We collected more than 60,000 individuals from 46 species. We employed species richness, Simpson's index of diversity, and non-metric multidimensional scaling (with the Bray—Curtis and Horn—Morisita indices) to examine spatial and temporal variation of finfish assemblages throughout the bay. Our analysis suggested that data collected in the subtidal pelagic were not a representative sample of that assemblage. Therefore, we considered 2 assemblages: the intertidal and subtidal benthic. Assemblage composition and species' relative abundances were different at diel, monthly, and annual timescales and were associated with changes in the catch rate of ubiquitous species. In the intertidal, these species included Gasterosteus aculeatus (Threespine Stickleback), Clupea harengus (Atlantic Herring), Alosa pseudoharengus (Alewife), and Menidia menidia (Atlantic Silverside). In the subtidal, the common species were Atlantic Herring and Pseudopleuronectes americanus (Winter Flounder). Statistical analyses indicated that both spatial and temporal factors were significant predictors of assemblage evenness. The sampling design, albeit complex, was sufficient to capture these differences and characterize these assemblages. Implications for future studies are that the study design must be sufficiently complex to capture the anticipated spatial and temporal variability inherent in such dynamic environments. Furthermore, given recent warming trends in the Gulf of Maine, this study's results suggest the importance of thoroughly understanding local temporal and ecosystem variability.
Modeling Mucopolysaccharidosis Type II in the Fruit Fly by Using the RNA Interference Approach

Mucopolysaccharidosis type II (MPS II) is a lysosomal storage disorder that occurs due to the deficit of the lysosomal enzyme iduronate 2-sulfatase (IDS) that leads to the storage of the glycosaminoglycan heparan- and dermatan-sulfate in all organs and tissues. It is characterized by important clinical features and the severe form presents with a heavy neurological involvement. However, almost nothing is known about the neuropathogenesis of MPS II. To address this issue, we developed a ubiquitous, neuronal, and glial-specific knockdown model in Drosophila melanogaster by using the RNA interference (RNAi) approach. Knockdown of the Ids/CG12014 gene resulted in a significant reduction of the Ids gene expression and enzymatic activity. However, glycosaminoglycan storage, survival, molecular markers (Atg8a, Lamp1, Rab11), and locomotion behavior were not affected. Even strongly reduced, IDS-activity was enough to prevent a pathological phenotype in a MPS II RNAi fruit fly. Thus, a Drosophila MPS II model requires complete abolishment of the enzymatic activity.
Getting Active with Active Video Games: A Quasi-Experimental Study

Given the cultural emphasis on academic achievement and environmental constraints to physical activity (PA), active video games (AVGs) may be used to decrease sedentary behavior and increase PA of Hong Kong children. This study explored the potential of a school-based AVG intervention on sedentary time, PA, body composition, and psychosocial factors among children. Eighty-seven children (intervention n = 30) were recruited from one primary school. Classes in Grades 4–6 were allocated to either the intervention group or the control group in a 2:1 ratio. The eight-week intervention involved children playing AVGs in an after-school class twice a week. Participants in the control group continued with their usual activities. Outcome included the change of participants in sedentary time, PA, percentage body fat, body mass index (BMI), and psychosocial variables (enjoyment, self-efficacy and social support), from baseline to eight weeks. No significant group differences were observed in sedentary time (−33.9 min/day, 95% CI −70.8 to 4.8; p = 0.07). The intervention group significantly increased total PA (53.7 counts/min, 95% CI 8.6 to 104.2; p = 0.04) compared with those in the control condition. No differences were found in body composition and psychosocial variables. However, significant treatment effects were found on BMI z score among boys (−0.1, 95% CI −0.2 to 0; p = 0.04). An eight-week school-based AVG intervention delivered during after-school hours was effective in increasing activity levels among Hong Kong children. The treatment effects of AVGs on sedentary behavior and body composition need to be further demonstrated in a more robust study, especially in boys.
Fun30 chromatin remodeler helps in dealing with torsional stress and camptothecin‐induced DNA damage

Fun30 is an ATP‐dependent chromatin remodeler in budding yeast that is involved in cellular processes important for maintaining genomic stability such as gene silencing and DNA damage repair. Cells lacking Fun30 are moderately sensitive to the topoisomerase inhibitor camptothecin and exhibit a delay in cell cycle progression in the presence of camptothecin. Here, we show that Fun30 is required to cope with torsional stress in the absence of Top1. Moreover, we show through genetic studies that Fun30 acts in a parallel pathway to Mus81 endonuclease but is epistatic to Tdp1 phosphodiesterase and Rad1 endonuclease in the repair of camptothecin‐induced DNA damage. More importantly, we show that DNA damage sensitivity of Fun30 deficient cells is enhanced in the absence of RNase H enzymes that remove RNA:DNA hybrids. We believe that chromatin remodeling by Fun30 may be important in dealing with torsional stress and camptothecin‐induced DNA damage.