Miracle-dz/UniFAR-FTUs huggingface dataset:
Efficacy of Some New Herbicides in Wet Seeded Rice (Oryza sativa L.)

Pyrazosulfuron-ethyl at 25 g ha−1 applied 10 days after sowing (DAS) was found most effective, recording 85.8% reduction in dry matter of weeds and 54.6% higher grain yield over weedy check. The corresponding increase in grain yield was 45.7, 39.0 and 28,8% with pyrazosulfuron-ethyl at 20 g ha−1 applied 10 DAS, two hand weedings done 20 and 40 DAS, and butachlor+safener at 1.00 kg ha−1 applied 3 DAS, respectively.
Quality of Life Outcomes in Frontal Sinus Surgery

Introduction: Although significant experience has been gained in the technical nuances of endoscopic sinus surgery procedures, the patient-reported outcomes of frontal endoscopic sinus surgery procedures are still poorly understood. In this study we used the validated patient outcome measure Sino Nasal Outcome Test-22 (SNOT-22) to assess the preoperative and postoperative quality of life in patients undergoing extended endoscopic frontal sinus surgery (Draf type 2 and Draf type 3 procedures). Methods: Out of a total of 680 patients undergoing endoscopic sinus and skull base surgery and 186 patients undergoing frontal sinus surgery, 99 chronic rhinosinusitis patients with (CRSwNP) or without (CRSnNP) nasal polyps undergoing Draf 2 or Draf 3 were assessed. Results: The mean preoperative SNOT-22 was 45.6 points for patients undergoing Draf 2 and 59 for patients undergoing Draf 3, while the mean radiological Lund–Mackay Score was 14.3 and 14.5, respectively. Mean SNOT 22 improvement was 22.9 points for Draf 2 and 37 points for Draf 3 respectively and remained significant in all time intervals, including at 4 years after surgery. With the exception of loss of smell/taste, all symptoms improved by a far bigger extent in Draf 3 group, despite the considerably worse starting point. Effect size (Cohen / Standard Deviations) of Draf 3 was greatest in the following symptoms: “being frustrated/restless/irritable” (1.63), “nasal blockage” (1.43), “reduced concentration” (1.35), “fatigue” (1.29) “runny nose” (1.26) and “need to blow nose” (1.17). Frontal sinus (neo) ostium was patent (fully or partly) at last follow up in 98% of Draf 2 patients and in 88% of patients following Draf 3. Patients with non-patent frontal (neo-) ostium however had a mean postoperative SNOT 22 score of 43 compared to 20 of those with patent frontal sinus (neo-) ostium, although the difference was not statistically significant. Conclusion: Patients undergoing Draf 3 have a greater burden of disease, including both nasal and emotional/general symptoms compared to Draf 2 patients; surgery results in improvement in both groups, although Draf 3 patients have the greatest benefit, especially in emotional / general symptons. In this way both groups achieve similar postoperative quality of life, despite the different starting points.
Observations Concerning the Time Factor in Egg Production

Abstract When a bird lays for several days in succession the first egg is usually the heaviest and generally there is a gradual decrease in the weight of the eggs toward the end of the series, the last egg being the lightest. Then, after the bird has ceased to lay for one or more days, another series of eggs is started beginning with a heavy egg, and so on. A series of eggs so laid is called a cycle. The first egg of a cycle is usually laid relatively early in the day and the remainder of the eggs are generally laid later and later respectively on following days. An example of an egg cycle showing the weights of the eggs and the time of laying is shown in Table I. It is evident from Table I that the normal laying period for this bird during the time under consideration was .
Nerolidol Mitigates Colonic Inflammation: An Experimental Study Using both In Vivo and In Vitro Models

Nerolidol (NED) is a naturally occurring sesquiterpene alcohol present in various plants with potent anti-inflammatory effects. In the current study, we investigated NED as a putative anti-inflammatory compound in an experimental model of colonic inflammation. C57BL/6J male black mice (C57BL/6J) were administered 3% dextran sodium sulfate (DSS) in drinking water for 7 days to induce colitis. Six groups received either vehicle alone or DSS alone or DSS with oral NED (50, 100, and 150 mg/kg body weight/day by oral gavage) or DSS with sulfasalazine. Disease activity index (DAI), colonic histology, and biochemical parameters were measured. TNF-α-treated HT-29 cells were used as in vitro model of colonic inflammation to study NED (25 µM and 50 µM). NED significantly decreased the DAI and reduced the inflammation-associated changes in colon length as well as macroscopic and microscopic architecture of the colon. Changes in tissue Myeloperoxidase (MPO) concentrations, neutrophil and macrophage mRNA expression (CXCL2 and CCL2), and proinflammatory cytokine content (IL-1β, IL-6, and TNF-α) both at the protein and mRNA level were significantly reduced by NED. The increase in content of the proinflammatory enzymes, COX-2 and iNOS induced by DSS were also significantly inhibited by NED along with tissue nitrate levels. NED promoted Nrf2 nuclear translocation dose dependently. NED significantly increased antioxidant enzymes activity (Superoxide dismutase (SOD) and Catalase (CAT)), Hemeoxygenase-1 (HO-1), and SOD3 mRNA levels. NED treatment in TNF-α-challenged HT-29 cells significantly decreased proinflammatory chemokines (CXCL1, IL-8, CCL2) and COX-2 mRNA levels. NED supplementation attenuates colon inflammation through its potent antioxidant and anti-inflammatory activity both in in vivo and in vitro models of colonic inflammation.
Numerical Spiking Neural P Systems

Spiking neural P (SN P) systems are a class of discrete neuron-inspired computation models, where information is encoded by the numbers of spikes in neurons and the timing of spikes. However, due to the discontinuous nature of the integrate-and-fire behavior of neurons and the symbolic representation of information, SN P systems are incompatible with the gradient descent-based training algorithms, such as the backpropagation algorithm, and lack the capability of processing the numerical representation of information. In this work, motivated by the numerical nature of numerical P (NP) systems in the area of membrane computing, a novel class of SN P systems is proposed, called numerical SN P (NSN P) systems. More precisely, information is encoded by the values of variables, and the integrate-and-fire way of neurons and the distribution of produced values are described by continuous production functions. The computation power of NSN P systems is investigated. We prove that NSN P is Turing universal as number generating devices, where the production functions in each neuron are linear functions, each involving at most one variable; as number accepting devices, NSN P systems are proved to be universal as well, even if each neuron contains only one production function. These results show that even if a single neuron is simple in the sense that it contains one or two production functions and the production functions in each neuron are linear functions with one variable, a network of simple neurons are still computationally powerful. With the powerful computation power and the characteristic of continuous production functions, developing learning algorithms for NSN P systems is potentially exploitable.
Race modifies the association between animal protein metabolite 1-methylhistidine and blood pressure in middle-aged adults: the Bogalusa Heart Study.

OBJECTIVE Dietary factors mediate racial disparities in hypertension. However, the physiological mechanisms underlying this relationship are incompletely understood. We sought to assess the association between 1-methylhistidine (1-MH), a metabolite marker of animal protein consumption, and blood pressure (BP) in a community-based cohort of black and white middle-aged adults. METHODS This analysis consisted of 655 participants of the Bogalusa Heart Study (25% black, 61% women, aged 34-58 years) who were not taking antihypertensive medication. Fasting serum 1-MH was measured using liquid chromatography-tandem mass spectroscopy. Animal food intakes were quantified by food-frequency questionnaires. Multivariable linear regression assessed the association between 1-MH and BP in combined and race-stratified analyses, adjusting for demographic, dietary, and cardiometabolic factors. RESULTS A significant dose--response relationship was observed for the association of red meat (P-trend <0.01) and poultry (P-trend = 0.03) intake with serum 1-MH among all individuals. Serum 1-MH, per standard deviation increase, had a significant positive association with SBP (β=3.4 ± 1.6 mmHg, P = 0.04) and DBP (β=2.0 ± 1.1 mmHg, P = 0.05) in black participants, whereas no appreciable association was observed in white participants. Among a subgroup of black participants with repeat outcome measures (median follow-up = 3.0 years), one standard deviation increase in 1-MH conferred a 3.1 and 2.2 mmHg higher annual increase in SBP (P = 0.03) and DBP (P = 0.03), respectively. CONCLUSION Serum 1-MH associates with higher SBP and DBP in blacks, but not whites. These results suggest a utility for further assessing the role of dietary 1-MH among individuals with hypertension to help minimize racial disparities in cardiovascular health.
Influence of mesh size and tooth spacing on the proportion of damaged organisms in the catches of the Portuguese clam dredge fishery

Experiments to assess the effect of mesh size and tooth spacing on the catch of Spisula solida were undertaken with the aim of determining an optimal combination of these two characteristics to minimize the dredging impact on by-catch species. However, our data showed that tooth spacing, mesh size and the interactions between these two factors did not affect the number of damaged macrofaunal individual's caught. This may be because infauna entered the dredge without passing through the space between the teeth and the mesh of the net bag closed as it was stretched by the weight of the contents, preventing the escape of the caught individuals. Thus, independently of mesh size, when the dredge is towed over the sediment, the retained individuals were injured due to abrasion between animals and/or between animals and debris. The severity of injuries inflicted by dredging on different macrobenthic species is related to their morphology and fragility.
The Xiphinema americanum group. 3: Keys to species identification

A polytomous and a dichotomous key for specific identification of 49 putative species of the Xiphinema americanum group are presented. Priority is given to quantitative characters to minimize dependency on subjective judgements. Among the characters selected odontostyle length, ratios c and c', and V% appeared the most reliable for examining intra- and inter-population relationships.
EFFECTS OF THE PLEROCERCOID LARVA OF A PSEUDOPHYLLIDEAN CESTODE, LIGULA INTESTINALIS, ON THE PITUITARY GLAND AND GONADS OF ITS HOST

1. Infections with the plerocercoid larvae of a pseudophyllidean cestode, Ligula intestinalis, are shown to be associated with histological changes in the pituitary gland and gonads of its host.2. The results of experimental infections in Rutilus rutilus and Xenopus laevis are similar to those which follow testosterone implantation. It is suggested that the parasite produces an anti-gonadotrophic substance.
Characterizing the role of innate and adaptive immune responses in the pathogenesis of Chlamydia genital tract infection

Sexually transmitted infections with Chlamydia trachomatis are highly prevalent and can lead to irreversible tissue damage if infection ascends from the cervix to the upper reproductive tract. The goal of these studies was to determine key immune responses involved in either the development of oviduct pathology or protection from infection. Using the mouse model of Chlamydia genital tract infection, we determined that increased neutrophil recruitment and delayed apoptosis were associated with enhanced oviduct damage. Despite the important role of neutrophils in Chlamydia-induced tissue damage, we were unable to detect a central role for IL-17, IL-22, or IL-23 in neutrophil recruitment or the development of pathology. We found that IL-17 did promote Th1 immunity to infection but was not required for normal resolution of infection. Finally, we determined that expression of the adaptor molecule MyD88 by CD4+ T cells was required for efficient resolution of Chlamydia from the genital tract due to its role in enhancing the survival of these cells. These studies revealed that increased influx, survival, or activation of innate immune cells in the genital tract was associated with enhanced disease while prolonged survival of CD4+ T cells was associated with more efficient clearance of bacteria from the genital tract.
Properly Substituted Cyclic Bis-(2-bromobenzylidene) Compounds Behaved as Dual p300/CARM1 Inhibitors and Induced Apoptosis in Cancer Cells

Bis-(3-bromo-4-hydroxy)benzylidene cyclic compounds have been reported by us as epigenetic multiple ligands, but different substitutions at the two wings provided analogues with selective inhibition. Since the 1-benzyl-3,5-bis((E)-3-bromobenzylidene)piperidin-4-one 3 displayed dual p300/EZH2 inhibition joined to cancer-selective cell death in a panel of tumor cells and in in vivo xenograft models, we prepared a series of bis((E)-2-bromobenzylidene) cyclic compounds 4a–n to test in biochemical (p300, PCAF, SIRT1/2, EZH2, and CARM1) and cellular (NB4, U937, MCF-7, SH-SY5Y) assays. The majority of 4a–n exhibited potent dual p300 and CARM1 inhibition, sometimes reaching the submicromolar level, and induction of apoptosis mainly in the tested leukemia cell lines. The most effective compounds in both enzyme and cellular assays carried a 4-piperidone moiety and a methyl (4d), benzyl (4e), or acyl (4k–m) substituent at N1 position. Elongation of the benzyl portion to 2-phenylethyl (4f) and 3-phenylpropyl (4g) decreased the potency of compounds at both the enzymatic and cellular levels, but the activity was promptly restored by introduction of a ketone group into the phenylalkyl substituent (4h–j). Western blot analyses performed in NB4 and MCF-7 cells on selected compounds confirmed their inhibition of p300 and CARM1 through decrease of the levels of acetyl-H3 and acetyl-H4, marks for p300 inhibition, and of H3R17me2, mark for CARM1 inhibition.
Correcting for Intra-Individual Variability in Sodium Excretion in Spot Urine Samples Does Not Improve the Ability to Predict 24 h Urinary Sodium Excretion

Given a global focus on salt reduction efforts to reduce cardiovascular risk, it is important to obtain accurate measures of salt intake on a population level. This study determined firstly whether adjustment for intra-individual variation in urinary sodium (Na) excretion using three repeated 24 h collections affects daily estimates and whether the use of repeated spot urine samples results in better prediction of 24 h Na compared to a single collection. Twenty three community-dwelling men and women from South Africa (mean age 59.7 years (SD = 15.6)) participating in the World Health Organization Study on global AGEing and adult health (WHO-SAGE) Wave 3 study collected 24 h and spot early morning urine samples over three consecutive days to assess urinary Na excretion. INTERSALT, Tanaka, and Kawasaki prediction equations, with either average or adjusted spot Na values, were used to estimate 24 h Na and compared these against measured 24 h urinary Na. Adjustment was performed by using the ratio of between-person (sb) and total (sobs) variability obtained from repeated measures analysis of variance. Sensitivity of the equations to predict daily urinary Na values below 5 g salt equivalent was calculated. The sb/sobs for urinary Na using three repeated samples for spot and 24 h samples were 0.706 and 0.798, respectively. Correction using analysis of variance for 3 × 24 h collections resulted in contraction of the upper end of the distribution curve (90th centile: 157 to 136 mmoL/day; 95th centile: 220 to 178 mmoL/day). All three prediction equations grossly over-estimated 24 h urinary Na excretion, regardless of whether a single spot urine or repeated collections corrected for intra-individual variation were used. Sensitivity of equations to detect salt intake equivalent values of ≤5 g/day was 13% for INTERSALT, while the other two equations had zero sensitivity. Correcting for intra-individual variability in Na excretion using three 24 h urine collections contracted the distribution curve for high intakes. Repeated collection of spot samples for urinary Na analysis does not improve the accuracy of predicting 24 h Na excretion. Spot urine samples are not appropriate to detect participants with salt intakes below the recommended 5 g/day.
Studying models of balancing selection using phase-type theory

Balancing selection is an important process, which maintains genetic variability in many functionally important genes. To increase our understanding of its effects on patterns of genetic diversity, we analyse two models of long-term balancing selection at a biallelic locus, one with a constant population size and the other with recent population size changes, as well as a model of recent balancing selection. We use time-inhomogeneous phase-type theory to obtain the expected properties of the gene tree at a neutral site linked to the target of selection, and the linkage disequilibrium (LD) between the selected and neutral sites. For long-term balancing selection, we show that selection targets with equilibrium allele frequencies close to 50% are easier to detect than targets with unequal allele frequencies. The target is also easier to identify after a population size reduction. The spread of a new mutation under balancing selection initially produces diversity patterns in linked neutral regions that are similar to those for a selective sweep caused by positive selection, including reduced diversity and an excess of both high and low frequency derived variants, as well as excess LD with the selected locus. Although the effects of recent balancing selection are more subtle, patterns of diversity and LD remain in a non-equilibrium state for a much longer period than with a sweep, and provide complementary information regarding the selection event. These results can be used for developing new methods for detecting loci under balancing selection, and illustrate the power of time-inhomogeneous phase-type theory, which can be applied to a wide range of population genetic problems.
Genome-wide analysis clarifies the population genetic structure of wild gilthead sea bream (Sparus aurata)

Gilthead sea bream is an important target for both recreational and commercial fishing in Europe, where it is also one of the most important cultured fish. Its distribution range goes from the Mediterranean to the African and European coasts of the North-East Atlantic. So far, the genetic structure of this species in the wild has been studied with microsatellite DNA, but the pattern of differentiation could not be fully clarified. In this study, almost 1000 wild sea bream from 23 locations in the Mediterranean Sea and Atlantic ocean where genotyped at 1159 SNP markers, of which 18 potentially under selection. Neutral markers suggested the presence of a weak subdivision into three genetic clusters: Atlantic, West and East Mediterranean. This last group could be further subdivided into an Ionian/Adriatic and an Aegean group using outlier markers. Seascape analysis suggested that this differentiation was mainly due to difference in salinity, and this was also supported by preliminary genomic functional analysis. These results are of fundamental importance for the development of proper management of this species in the wild and are a first step toward the study of the potential genetic impact of the sea bream aquaculture industry.
SARS-CoV-2 Nsp1 binds ribosomal mRNA channel to inhibit translation

The non-structural protein 1 (Nsp1), also referred to as the host shutoff factor, is the first viral protein that is synthesized in SARS-CoV-2 infected human cells to suppress host innate immune functions1,2. By combining cryo-electron microscopy and biochemical experiments, we show that SARS-CoV-2 Nsp1 binds to the human 40S subunit in ribosomal complexes including the 43S pre-initiation complex. The protein inserts its C-terminal domain at the entrance to the mRNA channel where it interferes with mRNA binding. We observe potent translation inhibition in the presence of Nsp1 in lysates from human cells. Based on the high-resolution structure of the 40S-Nsp1 complex, we identify residues of Nsp1 crucial for mediating translation inhibition. We further show that the full-length 5’ untranslated region of the genomic viral mRNA stimulates translation in vitro, suggesting that SARS-CoV-2 combines inhibition of translation by Nsp1 with efficient translation of the viral mRNA to achieve expression of viral genes3.
Delayed graft function and perfusion parameters of kidneys from uncontrolled donors after circulatory death

Better preservation and evaluation of kidneys from donors after circulatory death serve to increase the number of kidneys available for transplantation and hypothermic machine perfusion has been shown to decrease ischemia reperfusion injury and delayed graft function. Data on relation between hemodynamic parameters during hypothermic machine perfusion and delayed graft function in kidneys from donors after circulatory death are so far scarce and not univocal. We aimed at assessing whether hemodynamic parameters measured during hypothermic machine perfusion (flow, mean perfusion pressure, and renal resistance) are associated with delayed graft function in 26 kidneys retrieved from uncontrolled donors after circulatory death. In our series, the incidence of delayed graft function was 57.7% (15/26). Recipients who developed delayed graft function had a longer warm ischemic time (p = 0.04). All hemodynamic parameters measured during hypothermic machine perfusion were comparable between recipients with delayed graft function and those without. According to our data, in kidneys from uncontrolled donors after circulatory death, a longer warm ischemic time (that is the overall time of no flow, as the sum of the no-flow and the no-touch period) is associated with delayed graft function. This finding underscores the pivotal role of ischemic injury in terms of absence of flow in affecting graft function. No association was detectable between hemodynamic parameters during hypothermic machine perfusion and the development of delayed graft function in our series.
Challenges in lung cancer screening: a review of implemented programs

Lung cancer is the most common cause of cancer-related death in the world, and smoking is the most prevalent risk factor (1). Although the prevalence of smoking has declined over the last few decades, a staggering 37% of adults in the United States are current or former smokers (2). Despite the knowledge of increased risk in this population, at the time of diagnosis, lung cancer is often already in an advanced stage with 5-year survival as low as 15% (3-5). In the early 1970s, the National Cancer Institute sponsored several large scale studies to evaluate the utility of using chest X-ray film and sputum cytology for lung cancer screening (LCS), however, these studies failed to demonstrate any reduction in mortality (6,7). In 2011, the National Lung Screening Trial (NLST), a multicenter randomized controlled trial, established that screening with annual low dose chest computed tomography (LDCT) provided a 20% relative mortality reduction in individuals at high-risk for developing lung cancer (8). In addition, a 6.7% reduction in all-cause mortality was demonstrated by the NSLT, the highest seen across all cancer screening modalities (8,9). The number needed to screen with LDCT to prevent one death from lung cancer is 320 (10). For comparison, the number needed to screen to prevent one death from breast or colon cancer is 1,904 Review Article