Miracle-dz/UniFAR-FTUs huggingface dataset:
Comparison of microscopic and metagenomic approaches to identify cereal pathogens and track fungal spore release in the field

Wheat is one of the main staple food crops, and 775 million tonnes of wheat were produced worldwide in 2022. Fungal diseases such as Fusarium head blight, Septoria tritici blotch, spot blotch, tan spot, stripe rust, leaf rust, and powdery mildew cause serious yield losses in wheat and can impact quality. We aimed to investigate the incidence of spores from major fungal pathogens of cereals in the field by comparing microscopic and metagenomic based approaches for spore identification. Spore traps were set up in four geographically distinct UK wheat fields (Carnoustie, Angus; Bishop Burton, Yorkshire; Swindon, Wiltshire; and Lenham, Kent). Six major cereal fungal pathogen genera (Alternaria spp., Blumeria graminis, Cladosporium spp., Fusarium spp., Puccinia spp., and Zymoseptoria spp.) were found using these techniques at all sites. Using metagenomic and BLAST analysis, 150 cereal pathogen species (33 different genera) were recorded on the spore trap tapes. The metagenomic BLAST analysis showed a higher accuracy in terms of species-specific identification than the taxonomic tool software Kraken2 or microscopic analysis. Microscopic data from the spore traps was subsequently correlated with weather data to examine the conditions which promote ascospore release of Fusarium spp. and Zymoseptoria spp. This revealed that Zymoseptoria spp. and Fusarium spp. ascospore release show a positive correlation with relative humidity (%RH). Whereas air temperature (°C) negatively affects Zymoseptoria spp. ascospore release.
Correction of the post-irradiation T1 relaxation effect for chemical exchange-sensitive MRI: A phantom study

Purpose: In many pulse sequences of chemical exchange-sensitive MRI including multi-slice chemical exchange saturation transfer (CEST) or chemical exchange sensitive spin-lock (CESL), there is a finite time delay between the irradiation preparation and the imaging acquisition, during which the T1-relaxation reduces the chemical exchange contrast and affects the accuracy for volumetric imaging. We propose a simple post-acquisition method to correct this contamination. Methods: A simple formula was derived to evaluate the cross-slice T1-relaxation contamination in multi-slice echo-planar imaging (EPI) after the irradiation preparation. CEST and CESL experiments were performed on phantoms to examine the accuracy of this approach. Results: Theoretical derivation showed that the cross-slice T1-relaxation contamination in multi-slice EPI imaging can be corrected by the signals of each slice at a parameter that suppresses the signal, e.g., at the water frequency for CEST, or with very long spin-lock pulse for CESL. This formula was confirmed by the results of phantom experiments, for both long and short irradiation durations with and without a steady-state, respectively. To minimize the effect of B0 inhomogeneity in the CEST experiment, a more accurate measurement of the signal at water frequency can be achieved with a higher pulse power and shorter duration. Conclusion: We proposed and validated a simple approach to correct the cross-slice T1-relaxation effect, which can be applied to volumetric CEST and CESL studies acquired by multi-slice EPI, or other imaging modalities with similar T1-relaxation contamination.
Food addiction in Bulimia Nervosa: Analysis of body composition, psychological and problematic foods profile

Introduction Food Addiction (FA) has been related with eating disorders (ED), especially Bulimia Nervosa (BN). BN + FA may have different physical characteristics than patients with BN without the comorbidity, such as body mass index (BMI) or body composition, and psychological as emotion regulation. However, the relationship between psychological and physical aspects, connected by problematic food and its influence on body composition, has been barely studied. Therefore, the aims of the present study are: Aims (a) To explore the differences in body composition between FA positive (FA+) and negative (FA–) in women with BN; (b) to identify problematic relationship with certain food types, according with the foods mentioned in the YFAS scale questionnaire, between FA+ and FA– patients; (c) to know the psychological characteristic differences between FA+ and FA– patients, considering emotion regulation, personality traits and general psychopathological state; (d) to identify the relationship between physical and psychological traits, and the identified problematic foods, in patients with BN and FA. Methodology N = 81 BN women patients, with a mean age of 29.73 years ± 9.80 SD, who completed the questionnaires: Yale Food Addiction Scale V 1.0 (YFAS 1.0), Eating Disorder Inventory-2 (EDI-2), Symptom Checklist-90 Items-Revised (SCL-90-R), and Difficulties in Emotion Regulation Strategies (DERS). YFAS problematic foods were grouped considering their principal nutrients sources. Body composition and difference in metabolic age was determined using bioimpedance analyzer. Results The 88% of patients with BN presented FA+. Patients with BN who were FA+ self-reported more problematic relationships with sweets and starches. Also presented higher emotion regulation difficulties, general psychopathology and eating symptomatology severity, than those without FA. Finally, emotional regulation difficulties were positively associated with higher eating disorder symptomatology and more types of foods self-reported as problematic, which increased indirectly fat mass. Conclusion The results suggest that BN + FA presented more eating and psychopathology symptomatology and higher problems with specific food types. As well, the path analysis emphasized that emotion regulation difficulties might be related with problematic food relationship in BN, impacting over the ED severity. Implications The results may impact the development of precise therapies for patients with BN + FA.
Exact Solutions for Buckling of Structural Members

The study of buckling loads, which often hinges on numerical methods, is key in designing structural elements. But the need for analytical solutions in addition to numerical methods is what drove the creation of Exact Solutions for Buckling of Structural Members. It allows readers to assess the reliability and accuracy of solutions obtained by numerical methods. The author has attempted to gather and present as many exact buckling solutions as possible in one single volume for engineers and researchers. These buckling solutions of columns, beams, arches, ring plates, and shells should serve as benchmarks for checking the validity, convergence, and accuracy of numerical methods and solutions. Catalog Copy.
The correlation between OSA-related quality of life and two mental statuses in adolescent Chinese patients with cleft palate: A comprehensive study

Objectives To analyze obstructive sleep apnea (OSA)-related quality of life (QoL), the statuses of depression and anxiety, and to reveal the correlation between OSA-related QoL and two mental statuses in Chinese adolescent patients with cleft palate (CP). Methods The Obstructive Sleep Apnea Questionaire-18 (OSA-18), the Generalized Anxiety Disorder Scale (GAD-7) and the Patient Health Questionnaire-9 (PHQ-9) were applied to assess OSA-related QoL and the statuses of anxiety and depression in Chinese adolescent patients with CP, respectively. Non-CP adolescents were also included in the control group. OSA-related QoL and the two mental statuses were compared between the study and control groups. The correlation between the OSA-related QoL and two mental statuses was estimated in Chinese adolescent patients with CP. Results A total of 8.7% patients showed a moderate or high impact of OSA on QoL, while all the adolescents from the control group showed little impact. The mean total OSA-18 score of the study group (36.261 ± 13.500) was significantly higher than the control (28.435 ± 8.934). The mean PHQ-9 scores of the study group and the control group were statistically different (3.957 vs. 2.113). The GAD-7 score in the study group was slightly higher than the control group (3.043 vs. 2.194), while the proportion of moderate-severe anxiety in the study group was relatively larger than that in the control group (6.5% vs. 1.6%). Moreover, there was a positive correlation between the OSA-related QoL and the statuses of anxiety and depression respectively, and the differences in GAD-7 and PHQ-9 scores between the moderate or high impact group and the little impact group were statistically significant. Conclusion Chinese adolescents with CP reported a rate of moderate or high impact of OSA on QoL of 8.7%, which was significantly higher than adolescents without CP. The OSA-related QoL was worse and depression was severer in Chinese CP adolescents than in the control, while anxiety and depression in Chinese CP adolescents were associated with OSA-related QoL.
Dissemination of blaNDM-5 and mcr-8.1 in carbapenem-resistant Klebsiella pneumoniae and Klebsiella quasipneumoniae in an animal breeding area in Eastern China

Animal farms have become one of the most important reservoirs of carbapenem-resistant Klebsiella spp. (CRK) owing to the wide usage of veterinary antibiotics. “One Health”-studies observing animals, the environment, and humans are necessary to understand the dissemination of CRK in animal breeding areas. Based on the concept of “One-Health,” 263 samples of animal feces, wastewater, well water, and human feces from 60 livestock and poultry farms in Shandong province, China were screened for CRK. Five carbapenem-resistant Klebsiella pneumoniae (CRKP) and three carbapenem-resistant Klebsiella quasipneumoniae (CRKQ) strains were isolated from animal feces, human feces, and well water. The eight strains were characterized by antimicrobial susceptibility testing, plasmid conjugation assays, whole-genome sequencing, and bioinformatics analysis. All strains carried the carbapenemase-encoding gene blaNDM-5, which was flanked by the same core genetic structure (IS5-blaNDM-5-bleMBL-trpF-dsbD-IS26-ISKox3) and was located on highly related conjugative IncX3 plasmids. The colistin resistance gene mcr-8.1 was carried by three CRKP and located on self-transmissible IncFII(K)/IncFIA(HI1) and IncFII(pKP91)/IncFIA(HI1) plasmids. The genetic context of mcr-8.1 consisted of IS903-orf-mcr-8.1-copR-baeS-dgkA-orf-IS903 in three strains. Single nucleotide polymorphism (SNP) analysis confirmed the clonal spread of CRKP carrying-blaNDM-5 and mcr-8.1 between two human workers in the same chicken farm. Additionally, the SNP analysis showed clonal expansion of CRKP and CRKQ strains from well water in different farms, and the clonal CRKP was clonally related to isolates from animal farms and a wastewater treatment plant collected in other studies in the same province. These findings suggest that CRKP and CRKQ are capable of disseminating via horizontal gene transfer and clonal expansion and may pose a significant threat to public health unless preventative measures are taken.
MIKC-type MADS-box transcription factor gene family in peanut: Genome-wide characterization and expression analysis under abiotic stress

Peanut (Arachis hypogaea) is one of the most important economic crops around the world, especially since it provides vegetable oil and high-quality protein for humans. Proteins encoded by MADS-box transcription factors are widely involved in regulating plant growth and development as well as responses to abiotic stresses. However, the MIKC-type MADS-box TFs in peanut remains currently unclear. Hence, in this study, 166 MIKC-type MADS-box genes were identified in both cultivated and wild-type peanut genomes, which were divided into 12 subfamilies. We found a variety of development-, hormone-, and stress-related cis-acting elements in the promoter region of peanut MIKC-type MADS-box genes. The chromosomal distribution of peanut MADS-box genes was not random, and gene duplication contributed to the expansion of the MADS-box gene family. The interaction network of the peanut AhMADS proteins was established. Expression pattern analysis showed that AhMADS genes were specifically expressed in tissues and under abiotic stresses. It was further confirmed via the qRT-PCR technique that five selected AhMADS genes could be induced by abiotic and hormone treatments and presented different expressive profiles under various stresses. Taken together, these findings provide valuable information for the exploration of candidate genes in molecular breeding and further study of AhMADS gene functions.
How CMB and large-scale structure constrain chameleon interacting dark energy

We explore a chameleon type of interacting dark matter-dark energy scenario in which a scalar field adiabatically traces the minimum of an effective potential sourced by the dark matter density. We discuss extensively the effect of this coupling on cosmological observables, especially the parameter degeneracies expected to arise between the model parameters and other cosmological parameters, and then test the model against observations of the cosmic microwave background (CMB) anisotropies and other cosmological probes. We find that the chameleon parameters α and β, which determine respectively the slope of the scalar field potential and the dark matter-dark energy coupling strength, can be constrained to α < 0.17 and β < 0.19 using CMB data and measurements of baryon acoustic oscillations. The latter parameter in particular is constrained only by the late Integrated Sachs-Wolfe effect. Adding measurements of the local Hubble expansion rate H0 tightens the bound on α by a factor of two, although this apparent improvement is arguably an artefact of the tension between the local measurement and the H0 value inferred from Planck data in the minimal ΛCDM model. The same argument also precludes chameleon models from mimicking a dark radiation component, despite a passing similarity between the two scenarios in that they both delay the epoch of matter-radiation equality. Based on the derived parameter constraints, we discuss possible signatures of the model for ongoing and future large-scale structure surveys.
Associations between executive functioning, challenging behavior, and quality of life in children and adolescents with and without neurodevelopmental conditions

The present study sought to clarify the impact of executive and social functioning on challenging behavior and the downstream influence of challenging behavior on quality of life and functioning in a large transdiagnostic sample. Understanding these relationships is crucial for developing and designing tailored intervention strategies. In a cross-sectional study, parent informants of 2,004 children completed measures of executive and social functioning, challenging behavior, child and family quality of life, and reported on functional impacts of challenging behavior. Using structural (path) modeling, analyses evaluated the associations between executive and social functioning, including emotion regulation and risk avoidance, with overall and specific types of challenging behavior. Structural models also examined the influence of challenging behavior on child and family quality of life, including measures of the immediate and extended environment, and functional impacts on the parent/child as well as interactions with the medical/legal systems. Finally, mediational models explored the direct and indirect effects of executive and social functioning on quality of life and impact measures via challenging behavior. Results indicated that executive functioning accounts for substantial variance (R2 = 0.47) in challenging behavior. In turn, challenging behavior accounts for substantial variance in child and family quality of life (R2 = 0.36) and parent/child impacts (R2 = 0.31). Exploratory mediational models identified direct effects from executive and social functioning measures on quality of life and functional impacts and indirect effects for executive functioning via challenging behavior. These findings support the development of new intervention strategies and suggest the need to measure executive functioning when assessing and tailoring the treatment of challenging behavior in clinical practice.
Investigating post-traumatic stress disorder (PTSD) and complex PTSD among people with self-reported depressive symptoms

Background Trauma has been increasingly linked to depression. Previous studies have suggested that comorbid post-traumatic stress disorder (PTSD) may be associated with poor outcomes in depression treatment. However, the prevalence and correlates of ICD-11 PTSD and complex PTSD (CPTSD) in people with depression remain unclear. Methods This study examined the prevalence and correlates of ICD-11 PTSD and CPTSD in an online convenience sample of 410 adults from 18 different countries/regions who reported clinically significant levels of depressive symptoms (indicated by a Patient Health Questionnaire-9 score ≥10). Results According to the International Trauma Questionnaire results, 62.68% of participants met the ICD-11 criteria for PTSD/CPTSD (5.6% PTSD, 57.1% CPTSD). Participants with CPTSD reported more types of trauma and higher levels of interpersonal stress than those without PTSD. Participants with CPTSD also reported higher levels of mental health problems, including depressive, dissociative and psychotic symptoms, than those without PTSD. Only disturbances in self-organization (DSO) symptoms but not classical PTSD symptoms had a significant relationship with depressive symptoms, when other major variables (including trauma, interpersonal stress, and comorbid psychotic and dissociative symptoms) were controlled for. Conclusions Trauma-related symptoms should be regularly screened for in clients who report depressive symptoms. Depressed clients who have comorbid trauma disorders have more trauma and interpersonal stress and exhibit more severe mental health problems. They may require specific trauma-focused interventions in addition to standard depression treatments.
Searching for globular cluster-like abundance patterns in young massive clusters - II. Results from the Antennae galaxies

The presence of multiple populations (MPs) with distinctive light element abundances is a widespread phenomenon in clusters older than 6 Gyr. Clusters with masses, luminosities, and sizes comparable to those of ancient globulars are still forming today. Nonetheless, the presence of light element variations has been poorly investigated in such young systems, even if the knowledge of the age at which this phenomenon develops is crucial for theoretical models on MPs. We use J-band integrated spectra of three young (7-40 Myr) clusters in NGC 4038 to look for Al variations indicative of MPs. Assuming that the large majority (>70%) of stars are characterised by high Al content - as observed in Galactic clusters with comparable mass; we find that none of the studied clusters show significant Al variations. Small Al spreads have been measured in all the six young clusters observed in the near-infrared. While it is unlikely that young clusters only show low Al whereas old ones display different levels of Al variations; this suggests the possibility that MPs are not present at such young ages at least among the high-mass stellar component. Alternatively, the fraction of stars with field-like chemistry could be extremely large, mimicking low Al abundances in the integrated spectrum. Finally, since the near-infrared stellar continuum of young clusters is almost entirely due to luminous red supergiants, we can also speculate that MPs only manifest themselves in low mass stars due to some evolutionary mechanism.
On p-symmetric Heegaard splittings

We show that every p-fold strictly-cyclic branched covering of a b-bridge link in $S^3$ admits a p-symmetric Heegaard splitting - in the sense of Birman and Hilden - of genus $g=(b-1)(p-1)$. This gives a complete converse of one of the results of the two authors. Moreover, we introduce the concept of weakly p-symmetric Heegaard splittings and prove similar results in this more general context.
Is it a concern or a preference? An investigation into the ability of privacy scales to capture and distinguish granular privacy constructs

Privacy scales are frequently used to capture survey participants’ perspectives on privacy, but their utility hangs on their ability to reliably measure constructs associated with privacy. We investigate a set of common constructs (the intended objects of measurement by privacy scales) used in privacy surveys: privacy attitude, privacy preference, privacy concern, privacy expectation, privacy decision, and privacy behavior. First, we explore expert understanding of these constructs. Next, we investigate survey participants’ understanding of statements used in privacy scales aimed at measuring them. We ask a balanced sample of Proliﬁc participants in the United States to identify the extent to which different constructs describe each of a set of 30 statements drawn from scales used commonly in the privacy literature and 39 that we developed. Our analysis reveals considerable misalignment between the constructs associated with the statements and participant understanding. Many statements used in scales or that we developed with the intention to measure constructs such as privacy concern, are seen by survey participants as describing other constructs, such as privacy preferences. We also ﬁnd that no statement uniquely measured any one construct, though some more reliably track their target construct than others. Our ﬁndings constitute an epistemological problem for use of scales in the existing literature (are they capturing what we think they capture? ) and a practical problem for construction of new scales (how to ensure construct validity in the face of ill-deﬁned constructs and evolving privacy landscape? ). We use methods from corpus linguistics to identify characteristics of those statements most reliably associated with their target con-*
Enterprise Risk Management under Sustainability Platform

: Enterprise Risk Management (ERM) has become the most important part of management for all organizational types. As a consequence of globalization, public expectations have risen that businesses should behave responsibly and accountably in terms of minimizing their environmental and social impacts. Most private organizations have developed ERM system to take into account shareholders’ interests. However, existing ERM frameworks fail to address sustainability risk as a core component even though sustainability is crucial for ERM. The area of volatility included in ERM framework should be extended to include emerging sources of instability in environment and society if the organization is to achieve robust growth and create wealth in the long run. This paper proposes ERM framework under sustainability platform and discusses required roles of board of directors and senior executives.