Miracle-dz/UniFAR-FTUs huggingface dataset:
Stigmatization in Arabic psoriatic patients in the United Arab Emirates – a cross sectional study

Introduction Stigmatization is the phenomenon of labeling negatively people who differ from social norms in some aspect. It seems to be a common and important problem in dermatology. Psoriasis, being a chronic and recurrent skin disease, is frequently associated with various psychosocial consequences. Aim To evaluate the stigmatization level in an Arabic population of psoriatic individuals. Material and methods A total of 108 consecutive patients suffering from psoriasis were enrolled in the study. All recruited subjects were of Arabic origin. Severity of psoriasis was documented with the Psoriasis Area and Severity Index (PASI). Stigmatization was assessed with validated Arabic language versions of the 6-item Stigmatization Scale and the Feelings of Stigmatization Questionnaire. Moreover, all patients were asked to complete the Dermatology Life Quality Index (DLQI) questionnaire. Results The majority of patients showed feelings of stigmatization due to psoriasis. The mean level of stigmatization was 5.6 ±4.5 points assessed by the 6-item Stigmatization Scale and 98.4 ±26.4 points by the Feelings of Stigmatization Questionnaire. Positive attitudes and feeling of being flawed were the most bothersome aspects of stigmatization expressed by patients. Involvement of the face appeared to be the only independent factor influencing the stigmatization level. In the Feelings of Stigmatization Questionnaire, itching was found to be a factor responsible for feelings of stigmatization. Conclusions Our study indicated that stigmatization is common among psoriatic Arabic patients. We postulate that measurement of stigmatization level could contribute to the holistic therapeutic approach of psoriatic patients.
Functional roles of two polypeptide chains that compose an antigen- specific suppressor T cell factor

The functional roles of the two polypeptide chains that compose the T cell suppressor factor (TsF) that mediates the antigen-specific and genetically restricted suppressor function were studied by using the heavy or light chains isolated from the conventional TsF or the 11S and 13S mRNA translation products of TsF. Either the heavy or the light chain of mRNA translation products reconstitutes the active TsF that suppresses the antibody response in an antigen-specific and genetically restricted manner when it is combined with the isolated heavy or light chain from the conventional TsF. As a consequence, the antigen-binding heavy chain mediates the antigen specificity of TsF. On the other hand, the I-J-positive light chain works as an element to determine the genetic restriction specificity. Thus, the identity of the histocompatibility between the I-J haplotypes on the light chain and the responding cell is essential for the functional expression of TsF. No genetic preference, however, was observed, in the association of the heavy and light chains of TsF.
Biological Control of Dense-Thorned Bitter Apple, Solanum sisymbriifolium Lam. (Solanaceae), in South Africa

Solanum sisymbriifolium Lam. is a weed of disturbed areas in South Africa, particularly in the high-elevation summer rainfall areas of the country. Despite the introduction of the South American leaf-feeding tortoise beetle, Gratiana spadicea (Klug) (Coleoptera: Chrysomelidae: Cassidinae) in 1994, the weed has continued to spread. Although established in a number of regions, beetle populations appear to persist in relatively low numbers, inflicting minimal damage to the weed. Consequently, a number of variables have been investigated in order to explain this lack of efficacy, and in some cases, failure to establish. Gratiana spadicea populations in South Africa are under considerable stress both from abiotic and biotic sources. Population-limiting factors such as disturbance of overwintering sites, climatic incompatibility, and high rates of pupal parasitism translate into low numbers of the agent at the start of each growing season. Small early-season populations which are slow to build-up, coupled with asynchronous development of S. sisymbriifolium, limit the beetles' effectiveness and pre-empt any impact on the weeds' reproductive output. Consequently, G. spadicea alone is unlikely to control S. sisymbriifolium infestations in South Africa. The flower-feeding weevil Anthonomus sisymbrii Hustache (Coleoptera: Curculionidae: Anthonominae), may therefore warrant study as it could have the potential, if released, to curtail fruit production and further spread of S. sisymbriifolium.
Shoot Dry Weight, Chlorophyll and UV-B-absorbing Compounds as Indicators of a Plant’s Sensitivity to UV-B Radiation

When studying the effects of ultraviolet-B (UV-B) radiation on plants, a good measure of UV-B sensitivity is a decrease in dry weight, since this reflects the cumulative effect of many small disruptions in plant function. Measurements of chlorophyll concentration and the level of UV-absorbing compounds are also used to gauge plant health during and after UV-B exposure. When a variety of vegetable crop plants were screened for UV-tolerance, it was found that the levels of chlorophyll and UV-absorbing compounds did not correlate with sensitivity. Biomass accumulation was, however, correlated with UV-sensitivity; plants that accumulated more biomass over a 2-week period were more likely to be UV-B sensitive. This suggests that a rapid growth rate renders plants more sensitive to the injurious effects of UV-B radiation.
A stochastic model of gene expression with polymerase recruitment and pause release

Transcriptional bursting is a major source of noise in gene expression. The telegraph model of gene expression, whereby transcription switches between “on” and “off” states, is the dominant model for bursting. Recently it was shown that the telegraph model cannot explain a number of experimental observations from perturbation data. Here we study an alternative model that is consistent with the data and which explicitly describes RNA polymerase recruitment and polymerase pause release, two steps necessary for mRNA production. We derive the exact steady-state distribution of mRNA numbers and an approximate steady-state distribution of protein numbers which are given by generalized hypergeometric functions. The theory is used to calculate the relative sensitivity of the coefficient of variation of mRNA fluctuations for thousands of genes in mouse fibroblasts. This indicates that the size of fluctuations is mostly sensitive to the rate of burst initiation and the mRNA degradation rate. Furthermore we show that (i) the time-dependent distribution of mRNA numbers is accurately approximated by a modified telegraph model with a Michaelis-Menten like dependence of the effective transcription rate on RNA polymerase abundance. (ii) the model predicts that if the polymerase recruitment rate is comparable or less than the pause release rate, then upon gene replication the mean number of RNA per cell remains approximately constant. This gene dosage compensation property has been experimentally observed and cannot be explained by the telegraph model with constant rates. Statement of Significance The random nature of gene expression is well established experimentally. Mathematical modelling provides a means of understanding the factors leading to the observed stochasticity. There is evidence that the classical two-state model of stochastic mRNA dynamics (the telegraph model) cannot describe perturbation experiments and a new model that includes polymerase dynamics has been proposed. In this paper, we present the first detailed study of this model, deriving an exact solution for the mRNA distribution in steady-state conditions, an approximate time-dependent solution and showing the model can explain gene dosage compensation. As well, we use the theory together with transcriptomic data, to deduce which parameters when perturbed lead to a maximal change in the size of mRNA fluctuations.
Timing matters: primacy effects of experience on mood revealed using a novel Mood-Machine-Interface

Mood is thought to integrate across our experiences, yet we do not know how the relative timing of past events shapes how we feel in the moment. Here, we investigate the relationship between the timing of previous experiences and mood by combining a novel closed-loop mood controller alongside computational modelling and neural data. We first present the development of a Mood Machine Interface which allows us to individualize rewards in real-time in order to generate substantial mood transitions, across healthy as well as depressed, adolescents and adults. We then show that early-experiences have a larger effect on mood than recent ones, and that the longer one is exposed to a given context, the harder it is for new events to change mood. We find that ACC neural activity underlies the influence of early experiences on mood. This provides a neuro-computational account of mood regulation by early events and suggests new directions for individualized mood interventions.
Ivermectin inhibits extracellular vesicle secretion from parasitic nematodes

Lymphatic filariasis (LF) is a disease caused by parasitic filarial nematodes that is endemic in 49 countries and affects or threatens over 890 million people. Strategies to control LF rely heavily on mass administration of anthelmintic drugs including ivermectin (IVM), a macrocyclic lactone drug considered an Essential Medicine by the WHO. However, despite its widespread use the therapeutic mode of action of IVM against filarial nematodes is not clear. We have previously reported that filarial nematodes secrete extracellular vesicles (EVs) and that their cargo has immunomodulatory properties. Here we investigate the effects of IVM and other anti-filarial drugs on parasitic nematode EV secretion, motility, and protein secretion. We show that inhibition of EV secretion was a specific property of IVM, which had consistent and significant inhibitory effects across nematode life stages and species (with the exception of male parasites). IVM inhibited EV secretion, but not parasite motility, at therapeutically relevant concentrations. Protein secretion was inhibited by IVM in the microfilariae stage, but not in any other stage tested. Our data provides evidence that inhibiting the secretion of immunomodulatory EVs by parasitic nematodes could explain, at least in part, IVM mode of action and provides a phenotype for novel drug discovery.
Changes in Content and Chemical Composition of Tagetes minuta Oil at Various Harvest Times

Abstract The essential oil content and chemical composition of Tagetes minuta L. was determined at different harvesting times of budding, full flowering and fruit set stages. The oil was obtained by hydrodistillation of all samples, and was analyzed by GC and GC/MS. The oil content of samples which were harvested at budding, full flowering and fruit set stages were 1.55%, 1.44% and 1.0% (w/w) on a dry weight basis, respectively. Nineteen, 20 and 19 compounds have been identified in the oils of budding, full flowering and fruit set stages of T. minuta, respectively. The major compounds were limonene, dihydrotagetone, (Z)-tagetone, (E)-ocimenone and α-terpineol. The results showed that harvest times had a major effect on the constituents of the oil of T. minuta.
High expression of angiotensin-converting enzyme-2 (ACE2) on tissue macrophages that may be targeted by virus SARS-CoV-2 in COVID-19 patients

Angiotensin-converting enzyme-2 (ACE2) has been recognized as the binding receptor for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that infects host cells, causing the development of the new coronavirus infectious disease (COVID-19). To better understand the pathogenesis of COVID-19 and build up the host anti-viral immunity, we examined the levels of ACE2 expression on different types of immune cells including tissue macrophages. Flow cytometry demonstrated that there was little to no expression of ACE2 on most of the human peripheral blood-derived immune cells including CD4+ T, CD8+ T, activated CD4+ T, activated CD8+ T, CD4+CD25+CD127low/− regulatory T cells (Tregs), Th17 cells, NKT cells, B cells, NK cells, monocytes, dendritic cells (DCs), and granulocytes. Additionally, there was no ACE2 expression (< 1%) found on platelets. Compared with interleukin-4-treated type 2 macrophages (M2), the ACE2 expression was markedly increased on the activated type 1 macrophages (M1) after the stimulation with lipopolysaccharide (LPS). Immunohistochemistry demonstrated that high expressions of ACE2 were colocalized with tissue macrophages, such as alveolar macrophages found within the lungs and Kupffer cells within livers of mice. Flow cytometry confirmed the very low level of ACE2 expression on human primary pulmonary alveolar epithelial cells. These data indicate that alveolar macrophages, as the frontline immune cells, may be directly targeted by the SARS-CoV-2 infection and therefore need to be considered for the prevention and treatment of COVID-19.
Coral Morphology Portrays the Spatial Distribution and Population Size-Structure Along a 5–100 m Depth Gradient

Population size structure provides information on demographic characteristics, such as growth and decline, enabling post-hoc assessment of spatial differences in susceptibility to disturbance. Nevertheless, very few studies have quantified size data of scleractinian corals along a shallow-mesophotic gradient, partly because of previously inaccessible depths. Here, we report the coral size-frequency distributions at the morphology level (six growth forms) and at the species level for ten representative locally abundant species along a broad depth gradient (5–100 m) in the Gulf of Eilat/Aqaba (GoE/A). A total of 18,865 colonies belonging to 14 families and 45 genera were recorded and measured over four reef sites. Colonies were found to be 11.2% more abundant at mesophotic (40–100 m; 55.6%) depths compared with shallow (5–30 m; 44.4%). The coral taxa exhibited heterogeneity in their size-structure, with marked differences among depths, morphological growth forms, and species. Branching and corymbose corals were more prevalent in shallow waters, while encrusting and laminar forms comprised the majority of mesophotic corals. Nevertheless, massive morphology was the most abundant growth form across all sites and depths (39%), followed by laminar (26%) and encrusting (20%). Corymbose corals (primarily Acroporidae) revealed constrained size at all depths; with the lack of small-size groups indicating populations at risk of decline. Depth-generalist species belonging to massive and laminar morphologies generally exhibited a larger colony size at the mesophotic depths, but were typified by a higher number of small colonies. Furthermore, we refute the widely and long-accepted assertion that Stylophora pistillata is the most abundant coral in the northern GoE/A, and assert that Leptoseris glabra is the one. Here, we provide a baseline for future monitoring of coral population structures, insights to recent ecological dynamics, retrospective assessment of coral community recovery following disturbances and grounds for conservation assessments and management actions.
Genome-Wide Identification of Apple Ubiquitin SINA E3 Ligase and Functional Characterization of MdSINA2

SINA (Seven in absentia) proteins are a small family of ubiquitin ligases that play important roles in regulating plant growth and developmental processes as well as in responses to diverse types of biotic and abiotic stress. However, the characteristics of the apple SINA family have not been previously studied. Here, we identified 11 MdSINAs members in the apple genome based on their conserved, N‐terminal RING and C-terminal SINA domains. We also reconstructed a phylogeny of these genes; characterized their chromosomal location, structure, and motifs; and identified two major groups of MdSINA genes. Subsequent qRT-PCR analyses were used to characterize the expression of MdSINA genes in various tissues and organs, and levels of expression were highest in leaves. MdSINAs were significantly induced under ABA and carbon- and nitrate-starvation treatment. Except for MdSINA1 and MdSINA7, the other MdSINA proteins could interact with each other. Moreover, MdSINA2 was found to be localized in the nucleus using Agrobacterium-mediated transient expression. Western-blot analysis showed that MdSINA2 accumulated extensively under light, decreased under darkness, and became insensitive to light when the RING domain was disrupted. Finally, ABA-hypersensitive phenotypes were confirmed by transgenic calli and the ectopic expression of MdSINA2 in Arabidopsis. In conclusion, our results suggest that MdSINA genes participate in the responses to different types of stress, and that MdSINA2 might act as a negative regulator in the ABA stress response.
Response Activation and Inhibition in Patients With Prolactinomas: An Electrophysiological Study

Impairment of executive function has been reported in patients with prolactinomas. However, few studies have investigated the electrophysiological mechanisms of response activation and response inhibition in these patients. In this study, we employ an event-related potentials (ERPs) technique to quantitatively assess response activation and inhibition before and after the surgical treatment of prolactinomas. A 64-electrode electroencephalogram (EEG) skullcap was used to record the brain activity in 20 pre-operative patients, 20 follow-up post-operative patients, and 20 healthy controls (HCs) while performing the visual Go/Nogo task. As expected, we identified P300 across all study populations that could reflect response activation and inhibition. Across the three groups, the Nogo stimuli evoked larger frontal-central P300 than the Go stimuli did. In contrast, the Go trials elicited larger parietal P300 than the Nogo trials did. The peak latency of P300 was significantly delayed in both the pre-operative and the post-operative groups compared to the HCs. The amplitude of P300 in both the Go and the Nogo conditions was significantly decreased in the pre-operative patients compared with that of the HCs. At 6 months post-operatively, the prolactinoma patients showed an increase in amplitude of P300 during both the Go and the Nogo tasks. These findings indicate that the prolactinoma patients suffer from deficits in response activation and inhibition, which could be improved by surgical treatment.
Use of Prazosin for Pediatric Post-Traumatic Stress Disorder With Nightmares and/or Sleep Disorder: Case Series of 18 Patients Prospectively Assessed

Objectives Few studies have investigated pharmacologic treatment for pediatric post-traumatic stress disorder (PTSD). Prazosin, an alpha-1 adrenergic receptor antagonist, has been studied and demonstrated to be efficacious in an adult population for PTSD related sleep disturbances; however, in the pediatric population, data is limited to case reports and retrospective case series. This study prospectively assessed the safety and effects of Prazosin on PTSD symptoms in a pediatric sample. Methods Since 2016, 18 patients with PSTD under the age of 15 admitted in a child and adolescent psychiatric unit were challenged with prazosin as part of a treatment protocol. PTSD symptoms and adverse effects were collected weekly and prospectively assessed each month with validated clinical scales. All data were retrospectively analyzed. This treatment protocol and the evaluation of clinical data were approved by our Ethical committee for research on preexisting data at the University Teaching Hospital of Rouen. Results Among the 18 patients (10 girls and 8 boys), 13 (72%) had experienced sexual abuse and 5 (28%) family violence. After 1 month of treatment with a mean prazosin dose of 2.16 ( ± 0.6) mg/day, the CGI-S score significantly decreased from 5.3 ( ± 0.9) to 2.9 ( ± 0.7) (improvement of 43%). The mean total UCLA-PTSD-RI score significantly decreased 11.4 points ( ± 5.4) during the first week and 37.9 ( ± 16) during the first month, leading to an improvement of 20% and 67%, respectively. The improvement was significant irrespective of trauma exposure or sex. No adverse effects were reported except for one patient (hypotension). Conclusion Consistent with prior case reports and retrospective reviews, our retrospective analysis of data prospectively and systematically assessed among 18 patients suggests that prazosin is well-tolerated and associated with improvement in symptoms for pediatric PTSD.
Imatinib and Dasatinib Provoke Mitochondrial Dysfunction Leading to Oxidative Stress in C2C12 Myotubes and Human RD Cells

Tyrosine kinase inhibitors (TKIs) can cause skeletal muscle toxicity in patients, but the underlying mechanisms are mostly unclear. The goal of the current study was to better characterize the role of mitochondria in TKI-associated myotoxicity. We exposed C2C12 murine myoblasts and myotubes as well as human rhabdomyosarcoma cells (RD cells) for 24 h to imatinib (1–100 µM), erlotinib (1–20 µM), and dasatinib (0.001–100 µM). In C2C12 myoblasts, imatinib was membrane toxic at 50 µM and depleted the cellular ATP pool at 20 µM. In C2C12 myotubes exposed to imatinib, ATP depletion started at 50 µM whereas membrane toxicity was not detectable. In myoblasts and myotubes exposed to dasatinib, membrane toxicity started at 0.5 µM and 2 µM, respectively, and the ATP drop was visible at 0.1 µM and 0.2 µM, respectively. When RD cells were exposed to imatinib, ATP depletion started at 20 µM whereas membrane toxicity was not detectable. Dasatinib was membrane toxic at 20 µM and depleted the cellular ATP pool already at 0.5 µM. Erlotinib was not toxic in both cell models. Imatinib (20 µM) and dasatinib (1 µM) reduced complex I activity in both cell models. Moreover, the mitochondrial membrane potential (Δψm) was dissipated for both TKIs in myotubes. In RD cells, the Δψm was reduced only by dasatinib. Both TKIs increased mitochondrial superoxide accumulation and decreased the mitochondrial copy number in both cell lines. In consequence, they increased protein expression of superoxide dismutase (SOD) 2 and thioredoxin 2 and cleavage of caspase 3, indicating apoptosis in C2C12 myotubes. Moreover, in both cell models, the mRNA expression of Sod1 and Sod2 increased when RD cells were exposed to dasatinib. Furthermore, dasatinib increased the mRNA expression of atrogin-1 and murf-1, which are important transcription factors involved in muscle atrophy. The mRNA expression of atrogin-1 increased also in RD cells exposed to imatinib. In conclusion, imatinib and dasatinib are mitochondrial toxicants in mouse C2C12 myotubes and human RD cells. Mitochondrial superoxide accumulation induced by these two TKIs is due to the inhibition of complex I and is probably related to impaired mitochondrial and myocyte proliferation.