Miracle-dz/UniFAR-FTUs huggingface dataset:
Melting of 'Big Top' Nectarine Fruit: Some Physiological, Biochemical, and Molecular Aspects

Big Top' nectarine (Prunus persica (L.) Batsch) has appreciable keeping quality because it resembles, at ripening, the stony hard (SH) peach (P. persica) in firmness and crispness but melts at a slow speed at full ripening. We have characterized the postharvest behavior of 'Big Top' fruit, treated or not with ethylene for 5 days after harvest (DAH), and compared it with that of a SH peach ('Ghiaccio'). Pp-ACS1 expression, ethylene evolution, endo- polygalacturonase (endo-PG) production, and softening were evaluated and compared with those of the physiolog- ically ripe melting flesh (M) cultivar Bolero. Like 'Bolero', 'Big Top' fruit expressed Pp-ACS1 and evolved ethylene but with a 5-day delay. Pp-endo-PG expression, production of an active endo-PG, and fruit melting showed a parallel behavior; ethylene treatment enhanced all these features. In SH 'Ghiaccio' Pp-ACS1 expression, ethylene evolution, endo-PG production, and softening were absent during the first 5 DAH in air. 'Ghiaccio' neither expressed Pp-ACS1 nor evolved ethylene even after ethylene treatment but responded by accumulating Pp-endo-PG transcripts and an active endo-PG protein, with flesh melting. A 'Big Top' Pp-endo-PG clone showed several single nucleotide (SNP) and insertion-deletion (InDel) polymorphisms in comparison with the M Pp-endo-PG clone of 'Bolero' and substantial similarity with the Pp-endo-PG clone of 'Ghiaccio'. In 'Big Top', we identified a peculiar SNP (bp 348) and InDels shared with 'Ghiaccio', possibly suitable for discriminating among different genotypes. Overall, the data confirm the pivotal role of ethylene in the regulation of endo-PG production and in the determination of peach flesh texture and support the evidence that 'Big Top' could be classified as a melting (slow-melting) phenotype.
A Bayesian framework to unravel food, groundwater, and climate linkages: A case study from Louisiana

Advancing our understanding of the connections among groundwater, food, and climate is critical to meet global food demands while optimizing water resources usage. However, our understanding of the linkages among groundwater, food, and climate is still limited. Here, we offer a Bayesian framework to simulate crop yield at a regional scale and quantify its relationships and associated uncertainty with climate, groundwater, agricultural, and energy-related variables. We implemented the framework in the rice-producing regions of Louisiana from 1960–2015. To build a parsimonious model, we used a probability-based variable selection approach to detect the key drivers of rice yield. Rice yield increased, groundwater declined, and area planted declined or did not change over 56yrs. The number of irrigation wells, groundwater level, air temperature, and area planted were found to be the key drivers of rice yield. The regression coefficients showed that rice yield was positively related to groundwater level, and negatively related to area planted and the number of irrigation wells. The limited influence of N fertilizer was noted on rice yield for the period when fertilizer data were available. The inverse relationship between rice yield and area planted pointed to the adaption of efficient crop management practices that maintained or increased yield, despite the decline in area planted. The farmers' ability to install irrigation wells during droughts sustained the yields over long-term but not short-term. This decline in rice yield in response to drought over the short-term might explain the negative relation between yield and irrigation wells. Overall, this work highlighted the uncertainty in relationships between rice yield and key drivers and quantified the intimate connection between food and groundwater. This work may have implications for managing two highly competing commodities (i.e., groundwater and food) in agricultural regions.
What Seeds to Plant in the Great Basin? Comparing Traits Prioritized in Native Plant Cultivars and Releases with those that Promote Survival in the Field

ABSTRACT: Restoration in the Great Basin is typically a large-scale enterprise, with aerial, drill, and broadcast seeding of perennial species common after wildfires. Arid conditions and invasive plants are significant barriers to overcome, but relatively simple changes to seeds used for restoration may improve success. Here we summarize: 1) the composition of seed mixes used in recent postfire seedings in Nevada, 2) traits that were valued when cultivars and other native seed materials were named and released, and 3) traits that have been demonstrated to increase native perennial grass performance in invaded systems. A review of 420 seeding treatments on public shrublands in Nevada between 2006 and 2009 indicated that native perennial grasses and native shrubs were most frequently included in these projects, followed by exotic and native forbs, and lastly, exotic perennial grasses. Native perennial grasses made up the bulk of seeds used in these treatments, with multiple species of grasses (average of 3.4 species) typically seeded per treatment, while the richness of other functional groups in seed mixes was closer to 1 species per treatment. Traits prioritized in cultivars and native seed material releases included, in order of frequency: forage quality and yield, seed yield, seedling vigor, ability to establish and persist, and drought tolerance, with many other traits mentioned with less frequency. Traits that had consistent support for improving native perennial grass performance in the field were related to early phenology, small size, and higher root allocation. Further tests to determine which traits improve shrub and forb establishment under field conditions could further refine seed source selection, and help maintain diversity in Great Basin systems.
Performance satisfaction in Midget, a thruster-assisted bipedal robot

We will report our efforts in designing feedback for the thruster-assisted walking of a bipedal robot. We will assume for well-tuned supervisory controllers and will focus on fine-tuning the desired joint trajectories to satisfy the performance being sought. In doing this, we will devise an intermediary filter based on the emerging idea of reference governors. Since these modifications and impact events lead to deviations from the desired periodic orbits, we will guarantee hybrid invariance in a robust fashion by applying predictive schemes within a short time envelope during the double support phase of a gait cycle. To achieve the hybrid invariance, we will leverage the unique features in our robot, i.e., the thruster.
The lipoxygenase pathway is involved in elicitor-induced phytoalexin accumulation in plane tree (Platanus acerifolia) cell-suspension cultures

The Ceratocystis fimbriata f.sp. platani 66 kDa glycoprotein elicitor-induced secretion of soluble coumarins by plane tree (Platanus acerifolia (Aiton) Wild) cell-suspension cultures was investigated by studying the possible involvement of the octadecanoid pathway in the cell response. When cell-suspension cultures were treated with the glycoprotein elicitor, the cells exhibited a rapid and transient increase in lipoxygenase activity, in synthesis of endogenous jasmonic acid prior to the accumulation of coumarin phytoalexins. The treatment of cells with an inhibitor of lipoxygenase (ETYA) before elicitor addition, drastically reduced the lipoxygenase activity, the production of endogenous jasmonic acid and phytoalexin accumulation. The results demonstrate the role of the jasmonate pathway in the intracellular signal cascade. Zusammenfassung Der Lipoxygenaseweg ist bei der Elicitor induzierten Phytoalexinakkumulation in Platane-(Platanus acerifolia)-Zellsu-spensionskulturen beteiligt Das Ceratocystis fimbriata f.sp. platani 66-KD Glycoprotein induzierte mit Hilfe von Elicitoren die Sekretion von loslichen Coumarinen in Zellsuspensionskulturen von der Platane (Platanus acerifolia (Aiton) Wild). Dieses Phanomen wurde dahingehend untersucht, um festzustellen, ob der Octadecanoidweg moglicherweise bei der Zellreaktion beteiligt ist. Nach einer Behandlung der Zellsuspensionskulturen mit dem Glycoproteinelicitor konnte eine schnelle und vorubergehende Zunahme in der Lipoxygenaseaktivitat sowie in der Synthese von endogener Jasminsaure (JA) vor der Akkumulation von Coumarinphytoalexinen in den Zellen ermittelt werden. Eine Behandlung der Zellen mit einem Inhibitor der Lipoxygenase (ETYA, Eicosatetraynsaure) vor der Elicitorzugabe fuhrte zu einer drastischen Absenkung der Lipoxygenaseaktivitat, der Produktion von endogener JA sowie der Phytoalexinakkumulation. Die Ergebnisse zeigen die Bedeutung des Jasminsaureweges in der intrazellularen Signalkaskade.
Water-based Cold Protection of Chill-sensitive Foliage Plants in Shadehouses

Four water-based cold protection systems (under-benches mist (UBM), over- roadwaysmist (ORM),andtwoamong-plants fog(APF1, APF2))were evaluatedfortheir water use and effectiveness in protecting ornamental foliage plants from chilling injury (CI)underprotectedshadestructuresatthreecommerciallocationsinFlorida.UBMused a two-stage thermostat-controlled system with mist nozzles on 25-cm above-ground risers combinedwithanoverheadretractableheatcurtain.BothORMandAPF1hadseasonally applied polyethylene film cladding and manually controlled irrigation systems. The ORM system had the mist nozzles located 1.8 m high and APF1 and APF2 systems had the low- pressure fog nozzles mounted on 25-cm above-ground risers spaced among the plants. Temperature data loggers were placed outside and inside the northwest sections of the shadehouses.ORM andthe twoAPF systems were evaluatedduring freezeevents in 2006, 2007, and 2008 and UBM only in 2007 and 2008. UBM, ORM, and APF1 successfully kept the shadehouse temperatures above critical chilling temperatures for all of the foliage plants. APF2 protected all foliage crops except for jungle drum ''palm'' (Carludovica sp.) that sustained CI. At the UBM site, the air temperatures recorded inside the shadehouse were '17 8C warmer than outside. Both ORM and APF1 maintained adequately warm temperatures inside the shadehouses; however, the fog system maintained equal or higher temperatures than the mist system and used 86% less water. Inside temperatures were lower with APF2 than APF1 although the emitter type was the same and the water application rates were similar. These temperature differences were attributable to the greater APF2 shadehouse surface area (SA) and volume (V) compared with APF1 and indicate that the SA and V of structures being heated need to be considered when designing water-based low-pressure fog heating systems. The ORM and both fog systems conserved water compared with using the conventional sprinkler irrigation systems. These results show the potential of water-based approaches for maintaining shadehouses above chilling temperatures during freeze events.
Electronic monitoring trials on in the tropical tuna purse-seine fishery

The difficulty of ensuring adequate statistical coverage of whole fleets is a challenge for the implementation of observer programmes and may reduce the usefulness of the data they obtain for management purposes. This makes it necessary to find cost-effective alternatives. Electronic monitoring (EM) systems are being used in some fisheries as an alternative or a complement to human observers. The objective of this study was to test the use and reliability of EM on the tropical tuna purse-seine fishery. To achieve this objective, seven trips of tuna purse seiners operating in the three Oceans were closely monitored to compare the information provided by EM and on-board observers to determine if EM can reliably document fishing effort, set type, tuna catch, and bycatch. Total tuna catch per set was not significantly different between EM and observer datasets; however, regarding species composition, only main species matched between EM and observers. Success on set-type identification using EM varied between 98.3 and 56.3%, depending on the camera placement. Overall, bycatch species were underestimated by EM, but large bodied species, such as billfishes, were well documented. The analyses in this study showed that EM can be used to determine the fishing effort (number of sets) and total tuna catch as reliably as observers can. Set-type identification also had very promising results, but indicated that refinement of the methods is still needed. To be fully comparable with observer data, improvements for accurately estimating the bycatch will need to be developed in the application and use of the EM system. Operational aspects that need to be improved for an EM programme to be implemented include standardizing installation and on-board catch handling methodology as well as improvements in video technology deployment.
Exploring the effect of lexical inferencing and dictionary consultation on undergraduate EFL students’ vocabulary acquisition

This study compares how lexical inferencing and dictionary consultation affect L2 vocabulary acquisition. Sixty-one L1 Arabic undergraduates majoring in English language read target words in semi-authentic English reading materials and were either asked to guess their meaning or look it up in a dictionary. A pre- and delayed post-test measured participants’ knowledge of target words and overall vocabulary size. The results show a significant and comparable learning effect for both vocabulary learning strategies (VLS), with a higher pre-test vocabulary size related to a larger learning effect for both VLS. In addition, the better participants were at guessing correctly, the better they learned words through inferencing. The results suggest that both VLS are equally effective for our learner group and that learners’ overall vocabulary size influences the amount of learning that occurs when using these VLS.
miRNAs in Health and Disease: A Focus on the Breast Cancer Metastatic Cascade towards the Brain

MicroRNAs (miRNAs) are small non-coding RNAs that mainly act by binding to target genes to regulate their expression. Due to the multitude of genes regulated by miRNAs they have been subject of extensive research in the past few years. This state-of-the-art review summarizes the current knowledge about miRNAs and illustrates their role as powerful regulators of physiological processes. Moreover, it highlights their aberrant expression in disease, including specific cancer types and the differential hosting-metastases preferences that influence several steps of tumorigenesis. Considering the incidence of breast cancer and that the metastatic disease is presently the major cause of death in women, emphasis is put in the role of miRNAs in breast cancer and in the regulation of the different steps of the metastatic cascade. Furthermore, we depict their involvement in the cascade of events underlying breast cancer brain metastasis formation and development. Collectively, this review shall contribute to a better understanding of the uniqueness of the biologic roles of miRNAs in these processes, to the awareness of miRNAs as new and reliable biomarkers and/or of therapeutic targets, which can change the landscape of a poor prognosis and low survival rates condition of advanced breast cancer patients.
Foraging modes of cordyliform lizards

The first quantitative data on foraging mode in the cordyliform lizards reveal different foraging behaviours between and within families. All species of cordylids studied (four Cordylus, two Pseudocordylus. and one Platysaurus) are ambush foragers. However, the species of Cordylus and Pseudocordylus microlepidotus are the most extreme ambushers. These species spent a significantly lower per cent time moving than did all of the other species studied and made significantly fewer movements per minute than Platysaurus capensis and gerrhosaurids. In addition, P. microlepidotus made significantly fewer movements per minute than did its congener Pseudocordylus capensis. Possible reasons for the high number of movements per minute in Platysaurus capensis are discussed. Very limited observations of two gerrhosaurid species show that Cordylosaurus subtessellatus is an active forager and Gerrhosaurus validus forages actively at least some of the time. A tentative hypothesis of the evolution of cordyliform foraging behaviour based on very limited data hints that active foraging is plesiomorphic in the Gerrhosaurini and further that gerrhosaurids may have retained active foraging from the common ancestor of Scincidae and Cordyliformes. Somewhat stronger data suggest that ambush foraging arose in the common ancestor of Cordylidae or Cordylinae. Further study is needed to trace inter- and intrageneric changes in foraging mode in cordylids.
Antibacterial activity of plant extracts against oral and skin pathogens

The aim of this study is to examine the antibacterial activity of plant extracts. Both broth dilution and disc diffusion methods were used to assess the antibacterial activity of these extracts against skin and oral pathogens. Eryngium caucaseum Trautv, Eryngium bungeiBoiss and Adiantum capillus-veneris have shown antibacterial activity againstStreptococcus pyogenes, Streptococcus mutans, Staphylococcus aureus andStreptococcus sanguis. E. caucaseum Trautv showed the highest inhibition zone (> 30 mm) against S. pyogenes. The growth of S. pyogenes was remarkably inhibited by the ethanolic extract of the three plant extracts. Key words: Adiantum capilis–veneris, Eryngium bungei Boiss, plant extracts.
Preliminary study of presumptive intradural-intramedullary intervertebral disc extrusion in 20 dogs

Background Intradural-intramedullary intervertebral disc extrusion (IIVDE) is a rare condition of intervertebral disc disease. However, the diagnosis of IIVDE is challenging because the prognosis and imaging characteristics are poorly characterized. Objectives We aimed to describe the clinical and imaging characteristics of tentatively diagnosed IIVDE in dogs to assess the prognostic utility of neurological grade and magnetic resonance imaging (MRI) findings. Methods Twenty dogs were included in this retrospective cohort study. Results Nonchondrodystrophic breeds (n = 16) were more predisposed than chondrodystrophic breeds. Most dogs showed acute onset of clinical signs. Neurological examination at admission showed predominant non-ambulatory paraparesis (n = 9); paresis (n = 16) was confirmed more frequently than paralysis (n = 4). Follow-up neurological examination results were only available for 11 dogs, ten of whom showed neurological improvement and 8 showed successful outcomes at 1 month. The characteristic MRI findings include thoracic vertebra (T)2 hyperintense, T1 hypointense, intramedullary linear tracts with reduced disc volume, and cleft of the annulus fibrosus. None of the MRI measurements were significantly correlated with neurological grade at admission. Neurological grade did not differ according to the presence of parenchymal hemorrhage, parenchymal contrast enhancement, and meningeal contrast enhancement. Neurological grades at admission showed a statistical correlation with those observed at the 1-month follow-up (r = 0.814, p = 0.02). Conclusions IIVDE is a rare form of disc extrusion commonly experienced after physical activity or trauma and most frequently affects the cranial-cervical and thoracolumbar regions of nonchondrodystrophic dog breeds. Neurological score at admission emerged as a more useful prognostic indicator than MRI findings in dogs with suspected IIVDE.
Early Surgical Repair of Medial Meniscus Posterior Root Tear Minimizes the Progression of Meniscal Extrusion: 2-Year Follow-up of Clinical and Radiographic Parameters After Arthroscopic Transtibial Pull-out Repair

Background: Conflicting results have been reported concerning the progression of medial meniscal extrusion (MME) after arthroscopic transtibial pull-out repair of medial meniscus posterior root tear (MMRT), and no study has evaluated the relevant factors affecting the progression of MME. Purpose: To (1) evaluate the subjective and objective surgical outcomes of arthroscopic transtibial pull-out repair of MMRT and (2) identify relevant factors affecting the progression of MME after surgery. Study Design: Case-control study; Level of evidence, 3. Methods: A total of 63 patients who underwent isolated arthroscopic transtibial pull-out repair of MMRT between January 2010 and June 2017 were evaluated retrospectively. Clinical scores and various radiographic parameters were evaluated to assess the surgical outcomes. The patients were classified into 2 groups according to the change in medial meniscal extrusion ratio (MMER) at 1 year after surgery compared with before surgery (group 1 consisted of 21 patients with reduced or maintained MMER; group 2 consisted of 42 patients with increased MMER). Variables including baseline demographics, radiographic parameters, and arthroscopic findings were compared to identify relevant factors affecting the progression of MME after surgery. Results: In the overall cohort, clinical outcomes at postoperative 2 years improved significantly (P < .001 for visual analog scale score, International Knee Documentation Committee subjective score, and Lysholm score), whereas radiographic parameters showed an overall deterioration compared with the preoperative level. In subgroup comparisons, a significant difference was seen in the time from the onset of symptoms until surgery (P < .001), defined as preoperative symptom duration, which a subsequent logistic regression analysis revealed to be a relevant factor associated with the progression of MMER (P = .015). Both groups showed progression of radiographic osteoarthritis, but the progression was significantly higher in group 2 compared with group 1 at postoperative 2 years (P = .032). On receiver operating characteristic curve analysis, the cutoff point for preoperative symptom duration associated with the progression of MMER was 13 weeks (sensitivity, 52.4%; specificity, 76.2%; accuracy, 72.4%). Conclusion: The arthroscopic transtibial pull-out repair of MMRT showed clinical improvement but did not prevent the progression of knee osteoarthritis, MME, or MMER. Although the preservation of MMER was not capable of completely preventing the progression of knee degeneration, MMER still has a potential clinical value in delaying the rate of progression of knee degeneration. Early surgical repair of MMRT, within 13 weeks from the onset of symptoms, might be helpful to prevent the progression of MME.
Stand structure and tree growth in uneven-aged spotted gum (Corymbia maculata) forests: some implications for management.

Summary The current trend towards more naturalness and increased protection of biodiversity at the level of forest stands requires the management of structurally diverse forests. In this study we investigated the consequences of single-tree harvesting in mixed-species eucalypt forests on stand structure and tree growth. Data from continuous inventory plots indicated that single-tree selection without additional tending over a period of 40 years leads to the accumulation of high basal areas. Although the diameter distribution indicated a balanced stand, a high proportion of the trees, particularly in small dimensions, was slow growing, and the current structure could not ensure the replacement of trees in sawlog dimensions within acceptable periods. We recommend that some investment is required to reduce basal area of non-merchantable trees in these forests in order to provide the necessary growing space, in particular for smaller trees.
Immediate and Latent Effects of Carbon Dioxide on Insects

Les actions du CO 2 sont variees et ont lieu a differents niveaux. On connait peu de choses des mecanismes de perception du CO 2 et la transmission initiant des reponses. Des effets au niveau cerebral, endocrinologique, metabolique, respiratoire et circulatoire ont ete mis en evidence mais aucune explication unifiee des consequences comportementales et biologiques ne peut etre fournie. L'utilisation du CO 2 comme anesthesiant devrait etre limite en absence d'analyse precise de ses effets.