Miracle-dz/UniFAR-FTUs huggingface dataset:
The effect of moiré superstructures on topological edge states in twisted bismuthene homojunctions

Moiré superstructure–induced edge state modulation has been observed in bismuthene homojunctions. Creating and controlling the topological properties of two-dimensional topological insulators is essential for spintronic device applications. Here, we report the successful growth of bismuth homostructure consisting of monolayer bismuthene and single-layer black phosphorus–like Bi (BP-Bi) on the HOPG surface. Combining scanning tunneling microscopy/spectroscopy with noncontact atomic force microscopy, moiré superstructures with twist angles in the bismuth homostructure and the modulation of topological edge states of bismuthene were observed and studied. First-principles calculations reproduced the moiré superlattice and indicated that the structure fluctuation is ascribed to the stacking modes between bismuthene and BP-Bi, which induce spatially distributed interface interactions in the bismuth homostructure. The modulation of topological edge states is directly related to the variation of interlayer interactions. Our results suggest a promising pathway to tailor the topological states through interfacial interactions.
Haematology of the turbot, Psetta maxima (L.): ultrastructural, cytochemical and morphological properties of peripheral blood leucocytes

Optimum procedures for fish handling and sample processing for use when employing haematological parameters as health indicators in turbot, Psetta maxima (L.), have been established. We found thrombocytes to be the most abundant blood cell, representing approximately 52% of circulating leucocytes (lymphocytes, 40.8%; granulocytes, 5.6%; monocytes, 1.6%; total number of leucocytes=1.3 × 105 ml−1; packed cell volume=22.7%). The light- and electron-microscopical characteristics of these cell types are described, together with their cytochemical properties using Sudan Black B, Periodic Acid Schiff, Non-specific Esterase, and Acid and Alkaline Phosphatase. Turbot thrombocytes showed a high degree of shape alterations when observed in live preparations using phase contrast microscopy, while ultrastructural observations following the in vitro uptake of carbon particles supported an active process of phagocytosis by the thrombocytes, rather than passive entrapment. The lymphocytes of turbot are structurally similar to mammalian lymphocytes with the highest nuclear:cytoplasmic ratio of all the leucocytes observed. Small lymphocytes predominated, large lymphocytes forming less than 1% of the total white blood cell population. The most frequent granulocyte type was a neutrophil-like cell with an eccentric nucleus, only rarely seen in segmented form. In vitro uptake of carbon particles by granulocytes was not observed under the conditions of the experiment, although turbot granulocytes are capable of phagocytosis under different circumstances. These are discussed, along with other physiological and technical factors which can influence the blood parameter findings in fish.
Effects of Free-Air CO2 Enrichment (FACE) on experimental grassland communities

1. Experimental grassland communities (turves) were exposed to elevated (60 Pa) and ambient (35 Pa) CO2 partial pressures (pCO2) in a Free-Air Carbon Dioxide Enrichment (FACE) experiment between 30 March 1995 and 4 July 1996. The vegetation was cut once during the experiment prior to the final harvest (harvest 2). 2. No significant treatment effects on total plant biomass at the whole turf level were detected, although biomass was typically about 25% higher under fumigation in year 1 and about 15% higher in year 2. 3. Biomass for two of the six sown species was significantly higher at harvest 2 than at harvest 1. There were no significant differences between individual species’ biomass under the two CO2 treatments at either harvest 1 or 2 or in terms of overall cumulative biomass. However, in four of the five sown species in both years biomass tended to be higher in the fumigated than in the control rings (Cerastium holosteiodes, Phleum pratense, Plantago lanceolata and Poa trivialis). In contrast, Lolium perenne showed increased biomass under the control treatment relative to the fumigated treatment in both years. Owing to the high variance both within and between rings for each of the two treatments the statistical power of most, but not all, of the analyses carried out was poor. 4. The relative proportions of each species in the turves under fumigated and control treatments was broadly similar after the first summer, with differences in the second year being mainly owing to the negative response of L. perenne to CO2 fumigation.
E3 Ubiquitin Ligases as Immunotherapeutic Target in Atherosclerotic Cardiovascular Disease

Chronic low-grade inflammation drives atherosclerosis and despite optimal pharmacological treatment of classical cardiovascular risk factors, one third of the patients with atherosclerotic cardiovascular disease has elevated inflammatory biomarkers. Additional anti-inflammatory strategies to target this residual inflammatory cardiovascular risk are therefore required. T-cells are a dominant cell type in human atherosclerotic lesions. Modulation of T-cell activation is therefore a potential strategy to target inflammation in atherosclerosis. Ubiquitination is an important regulatory mechanism of T-cell activation and several E3 ubiquitin ligases, including casitas B-lineage lymphoma proto-oncogene B (Cbl-B), itchy homolog (Itch), and gene related to anergy in lymphocytes (GRAIL), function as a natural brake on T-cell activation. In this review we discuss recent insights on the role of Cbl-B, Itch, and GRAIL in atherosclerosis and explore the therapeutic potential of these E3 ubiquitin ligases in cardiovascular medicine.
Immunolocalization of sarcoplasmic reticulum proteins in mammalian skeletal muscle fibers

SYNOPSIS. The sarcoplasmic reticulum is the intracellular membrane system in skeletal muscle fibers which regulates the Ca2$ concentration of the myofibril and thereby the contraction relaxation cycle. In the past the proposed explanation for the differences in the contractile properties of fast and slow skeletal fibers has been attributed mainly to quantitative rather than qualitative differences in the structure, function and molecular composition of the sarcoplasmic reticulum of these two fiber types. Recent immunocytochemical and biochemical studies have, however, clearly demonstrated that the Ca2$-ATPase of the sarcoplasmic reticulum in slow skeletal fibers is structurally and thus perhaps also functionally related to that of the cardiac fibers, but distinctly different from that of fast skeletal fibers. Furthermore similar studies have shown that phospholamban, a cardiac sarcoplasmic reticulum protein believed to modulate the activity of the cardiac Ca2$-ATPase, is also present in slow but not fast skeletal fibers. The availability of antibodies specific to the fast and slow isoforms of the Ca2$-ATPase, and to phospholamban will now enable us to apply immunocytochemical labeling techniques to examine the effect of neuronal and other physiological signals on the regulation of the gene expression of sarcoplasmic reticulum proteins at the cellular level.
Comparison Between Supraclavicular Versus Video-Assisted Intrathoracic Phrenic Nerve Section for Transfer in Patients With Traumatic Brachial Plexus Injuries: Case Series.

BACKGROUND The phrenic nerve has been extensively reported to be a very powerful source of transferable axons in brachial plexus injuries. The most used technique used is supraclavicular sectioning of this nerve. More recently, video-assisted thoracoscopic techniques have been reported as a good alternative, since harvesting a longer phrenic nerve avoids the need of an interposed graft. OBJECTIVE To compare grafting vs phrenic nerve transfer via thoracoscopy with respect to mean elbow strength at final follow-up. METHODS A retrospective analysis was conducted among patients who underwent phrenic nerve transfer for elbow flexion at 2 centers from 2008 to 2017. All data analysis was performed in order to determine statistical significance among the analyzed variables. RESULTS A total of 32 patients underwent supraclavicular phrenic nerve transfer, while 28 underwent phrenic nerve transfer via video-assisted thoracoscopy. Demographic characteristics were similar in both groups. A statistically significant difference in elbow flexion strength recovery was observed, favoring the supraclavicular phrenic nerve section group against the intrathoracic group (P = .036). A moderate though nonsignificant difference was observed favoring the same group in mean elbow flexion strength. Also, statistical differences included patient age (P = .01) and earlier time from trauma to surgery (P = .069). CONCLUSION Comparing supraclavicular sectioning of the nerve vs video-assisted, intrathoracic nerve sectioning to restore elbow flexion showed that the former yielded statistically better results than the latter, in terms of the percentage of patients who achieve at least level 3 MRC strength at final follow-up. Furthermore, larger scale prospective studies assessing the long-term effects of phrenic nerve transfers remain necessary.
Density-Dependent Harvest Modeling for the Eastern Wild Turkey

Abstract Many current wild turkey (Meleagris gallopavo) harvest models assume density-independent population dynamics. We developed an alternative model incorporating both nonlinear density-dependence and stochastic density-independent effects on wild turkey populations. We examined model sensitivity to parameter changes in 5% increments and determined mean spring and fall harvests and their variability in the short term (3 yr) and long term (10 yr) from proportional harvesting under these conditions. In the long term, population growth rates were most sensitive to poult:female ratios and the form of density dependence. The nonlinear density-dependent effect produced a population that maximized yield at 40% carrying capacity. The model indicated that a spring or fall proportional harvest could be maximized for fall harvest rates between 0% and 13% of the population, assuming a 15% spring male harvest and 5% spring illegal female kill. Combined spring and fall harvests could be maximized at a 9% fall harvest, under the same assumptions. Variability in population growth and harvest rates increased uncertainty in spring and fall harvests and the probability of overharvesting annual yield, with growth rate variation having the strongest effect. Model simulations suggested fall harvest rates should be conservative (≤9%) for most management strategies.
Enduring Changes in Neuronal Function upon Systemic Inflammation Are NLRP3 Inflammasome Dependent

Neuroinflammation can be caused by various insults to the brain and represents an important pathologic hallmark of neurodegenerative diseases including Alzheimer's disease (AD). Infection-triggered acute systemic inflammation is able to induce neuroinflammation and may negatively affect neuronal morphology, synaptic plasticity, and cognitive function. In contrast to acute effects, persisting consequences for the brain on systemic immune stimulation remain largely unexplored. Here, we report an age-dependent vulnerability of wild-type (WT) mice of either sex toward a systemic immune stimulation by Salmonella typhimurium lipopolysaccharide (LPS). Decreased neuronal complexity three months after peripheral immune stimulation is accompanied by impairment in long-term potentiation (LTP) and spatial learning. Aged APP/PS1 mice reveal an increased sensitivity also to LPS of Escherichia coli, which had no effect in WT mice. We further report that these effects are mediated by NOD-like receptor family, pyrin domain containing 3 (NLRP3) inflammasome activation, since the genetic ablation and pharmacological inhibition using the NLRP3 inhibitor MCC950 rescue the morphological and electrophysiological phenotype. SIGNIFICANCE STATEMENT Acute peripheral immune stimulation has been shown to have both positive and negative effects on Aβ deposition. Improvements or worsening may be possible in acute inflammation. However, there is still no evidence of effects longer than a month after stimulation. The data are pointing to an important role of the NOD-like receptor family, pyrin domain containing 3 (NLRP3) inflammasome for mediating the long-term consequences of systemic immune stimulation, which in addition turns out to be age dependent.
An Intronic HCP5 Variant Is Associated With Age of Onset and Susceptibility to Graves Disease in UK and Polish Cohorts

Abstract Context The genetic background of young-onset Graves disease (GD) remains largely unknown. An intronic variant in human leukocyte antigen (HLA) complex P5 (HCP5) has previously been associated with GD susceptibility and age of onset in a cohort of Polish patients. Objective We aimed to investigate the association of the HCP5 variant rs3094228 with GD susceptibility and age of onset in a UK cohort and conduct a meta-analysis of UK and Polish data. Design and Participants rs3094228 was genotyped in 469 UK patients with GD using Taqman chemistry. Genotype frequencies were compared with genotypic data available from the Wellcome Trust case-control consortium using logistic regression analysis. To determine whether rs3094228 is independently associated with age of GD onset, the HLA DRB1*0301 tagging variant, rs535777, was also genotyped. Results The C allele of rs3094228 was overrepresented in the UK GD cohort compared with controls (P allele=5.08 × 10–9, odds ratio 1.76; [95% confidence interval, 1.46-2.13]). This association was more marked in young-onset GD (<30 years) (P allele=1.70 × 10–10 vs P allele=0.0008). The meta-analysis of UK and Polish data supported the association of the C allele with GD susceptibility (P allele=1.79 × 10–5) and age of onset (P allele=5.63 × 10–8). Haplotype analysis demonstrated that rs3094228 is associated with age of GD onset (P = 2.39 × 10-6) independent of linkage disequilibrium with HLA DRB1*0301. Conclusion The rs3094228 HCP5 polymorphism is independently associated with GD susceptibility and age of onset in a UK GD cohort. Our findings indicate a potential role of long noncoding ribonucleic acids, including HCP5, in GD pathogenesis, particularly in the younger population.
Evolution is a double‐edged sword, not a silver bullet, to confront global change

Although there is considerable optimism surrounding adaptive evolutionary responses to global change, relatively little attention has been paid to maladaptation in this context. In this review, we consider how global change might lead populations to become maladapted. We further consider how populations can evolve to new optima, fail to evolve and therefore remain maladapted, or become further maladapted through trait‐driven or eco–evo‐driven mechanisms after being displaced from their fitness optima. Our goal is to stimulate thinking about evolution as a “double‐edged sword” that comprises both adaptive and maladaptive responses, rather than as a “silver bullet” or a purely adaptive mechanism to combat global change. We conclude by discussing how a better appreciation of environmentally driven maladaptation and maladaptive responses might improve our current understanding of population responses to global change and our ability to forecast future responses.
Siglec-15 recognition of sialoglycans on tumor cell lines can occur independently of sialyl Tn antigen expression

Abstract Siglec-15 is a conserved sialic acid-binding Ig-like lectin expressed on osteoclast progenitors, which plays an important role in osteoclast development and function. It is also expressed by tumor-associated macrophages and by some tumors, where it is thought to contribute to the immunosuppressive microenvironment. It was shown previously that engagement of macrophage-expressed Siglec-15 with tumor cells expressing its ligand, sialyl Tn (sTn), triggered production of TGF-β. In the present study, we have further investigated the interaction between Siglec-15 and sTn on tumor cells and its functional consequences. Based on binding assays with lung and breast cancer cell lines and glycan-modified cells, we failed to see evidence for recognition of sTn by Siglec-15. However, using a microarray of diverse, structurally defined glycans, we show that Siglec-15 binds with higher avidity to sialylated glycans other than sTn or related antigen sequences. In addition, we were unable to demonstrate enhanced TGF-β secretion following co-culture of Siglec-15-expressing monocytic cell lines with tumor cells expressing sTn or following Siglec-15 cross-linking with monoclonal antibodies. However, we did observe activation of the SYK/MAPK signaling pathway following antibody cross-linking of Siglec-15 that may modulate the functional activity of macrophages.
Comparative Germination Ecology of Two Endemic Rhaponticum Species (Asteraceae) in Different Climatic Zones of the Ligurian and Maritime Alps (Piedmont, Italy)

Comparative studies of seed germination of closely related taxa can help increase our understanding of the ecological limitations of cold-adapted plants and forecast how they might respond to global warming. No studies exist on the relationship between thermoclimatic belts that classify mountain life zones according to bioclimatic criteria and the germination strategy of alpine plants. The aim of this study was to assess this relationship using two closely related species growing in different thermotypes and to test whether their germination responses were related to the climate at natural sites. Fresh Rhaponticum bicknellii and R. scariosum seeds were cold stratified for 0, 30, 60 and 90 days and tested for germination at 10, 15 and 20 °C. At the same time, seed burial experiments were run in the field and in the plant nursery. A GLM analysis showed that the length of cold stratification affected significantly only the germination of R. bicknellii seeds, while increasing temperatures prompted germination in both species. We found that R. bicknellii adopts a drought-avoiding germination strategy, while R. scariosum germination is favoured by warm temperatures. Our findings support the general view that alpine plants do not share common germination requirements and that any conclusions should be interpreted from a biogeographical and bioclimatic perspective. Therefore, seed germination and seedling establishment of endemic alpine species can also be predicted by looking at the bioclimate of the species’ range.
A nomogram to predict mechanical ventilation in Guillain‐Barré syndrome patients

Guillain‐Barré syndrome (GBS) is one of the most common causes of acute flaccid paralysis, with up to 20%‐30% of patients requiring mechanical ventilation. The aim of our study was to develop and validate a mechanical ventilation risk nomogram in a Chinese population of patients with GBS.
Epidemiology of intestinal helminthiases in a rural community of Ethiopia: Is it time to expand control programs to include Strongyloides stercoralis and the entire community?

Background Soil transmitted helminths are highly prevalent worldwide. Globally, approximately 1.5 billion people are infected with Ascaris lumbricoides, Trichuris trichiura or hookworm. Endemic countries carry out periodic mass treatment of at-risk populations with albendazole or mebendazole as a control measure. Most prevalence studies have focused on school aged children and therefore control programs are implemented at school level, not at community level. In this study, the prevalence of intestinal helminths, including Strongyloides stercoralis, was examined using a comprehensive laboratory approach in a community in north-western Ethiopia. Methods A cross-sectional survey was conducted on 792 individuals ≥5 years old in randomly selected houses in a rural district. Stools were examined using three techniques: a formol-ether concentration, the Baermann technique and a real time polymerase chain reaction test (these last two specific for S. stercoralis). Statistical analyses were performed between two large age groups, children (≤14 years old) and adults (≥15 years old). Results The prevalence of helminths was 91.3%; (95% CI: 89.3–93.3%). Hookworm was the most prevalent, 78.7% (95% CI 75.6–81.4%), followed by S. stercoralis 55.7% (95% CI 52.2–59.1%). Co-infection with both was detected in 45.4% (95% CI 42.0–49.0%) of the participants. The mean age of hookworm-infected individuals was significantly higher than non-infected ones (p = 0.003). Also, S. stercoralis infection was significantly associated with age, being more prevalent in adults (p = 0.002). Conclusions This is the highest prevalence of S. stercoralis detected in Ethiopia so far. Our results highlight the need of searching specifically for infection by this parasite since it usually goes unnoticed if helminth studies rely only on conventional diagnostic techniques, i.e. Kato-Katz. Moreover, the focus of these programs on children undermines the actual prevalence of hookworm. The adult population acts as a reservoir for both hookworm and S. stercoralis and this fact may negatively impact the current control programs in Ethiopia which only target treatment of school aged children. This reservoir, together with a lack of adequate water, sanitation and hygiene, increases the probability of re-infection in children. Finally, the high prevalence of S. stercoralis found calls for a comprehensive diagnostic approach in endemic areas in addition to a revision of control measures that is, adding ivermectin to current albendazole/mebendazole, since it is the drug of choice for S. stercoralis.
The weaver ant, Oecophylla smaragdina (Hymenoptera: Formicidae), an effective biological control agent of the red-banded thrips, Selenothrips rubrocinctus (Thysanoptera: Thripidae) in mango crops in the Northern Territory of Australia

Weaver ants, Oecophylla smaragdina (Fabricius), have been successfully used to control the main insect pests of cashew plantations in northern Australia and Papua New Guinea. The red-banded thrips, Selenothrips rubrocinctus (Giard), is an economically important insect pest of mango, Mangifera indica L. , orchards in the Northern Territory. This work was undertaken to evaluate whether weaver ants, which are abundant in mango orchards, have the potential to control the red-banded thrips. Field surveys, field experiments and laboratory trials were carried out in four mango orchards in the Darwin area over four years. In field surveys, the number of shoots damaged by the thrips was significantly lower on trees with abundant weaver ants (2.8%) than with fewer ants (21.1%), or without the ants (30.3%). Trees with abundant weaver ants also produced the highest numbers of flower panicles. Leaf examinations revealed that newly mature leaves on trees with abundant weaver ants had significantly fewer thrips than on trees with fewer or no ants. Field experiments showed that weaver ants were as effective as chemical insecticides in limiting fruit damage by thrips. In laboratory trials, seedlings without weaver ants were heavily damaged, and lost all their leaves within six weeks, while seedlings with weaver ants grew well and lost no leaves. This work suggests that the weaver ant is an effective biological control agent of the red-banded thrips, and the use of weaver ants in mango orchards is discussed.