Miracle-dz/UniFAR-FTUs huggingface dataset:
The utility of cranial ultrasound as a screening tool for neonatal ECMO

Abstract Background Neurologic complications including hemorrhage, ischemia, and infarction are often identified in neonates undergoing extracorporeal membrane oxygenation (ECMO) and may contribute to the high morbidity observed in ECMO survivors. Screening for intracranial complications is reliant on bedside transcranial ultrasound (CUS) prior to and during ECMO therapy, and advanced imaging [i.e. computed tomography (CT)/magnetic resonance imaging (MRI)] is recommended after completion of ECMO support. The goal of this study is to describe the correlation of intracranial complications identified on CUS during ECMO and MRI after completion of ECMO. Methods Fifty-five neonates underwent ECMO support at the Children’s Hospital of Georgia at Augusta University from January 1, 2012 to December 31, 2017. Forty-four (80%) had a brain MRI performed prior to transfer or discharge. Ultrasound studies were reviewed by a single blinded pediatric radiologist and MRIs were reviewed by a single blinded neuro-radiologist. Results Of the 44 neonates with post-ECMO MRI, CUS during ECMO identified intracranial lesions in nine neonates, which were all confirmed on post-ECMO MRI. Sixteen subjects (46%) with unremarkable CUS during ECMO had identifiable lesions on post-ECMO MRI, yielding a sensitivity of 36% and a specificity of 100% for CUS in the detection of intracranial lesions. Despite the lack of correlation between CUS and MR, 84.6% of survivors exhibited normal development at 24 months of age. Conclusion While necessary for the identification of intracranial lesions during neonatal ECMO, CUS demonstrated low correlation with post-ECMO MRI in the identification of intracranial lesions, which supports Extracorporeal Life Support Organization (ELSO) recommendations.
On the possible origin of protein homochirality, structure, and biochemical function

Significance Living systems contain mainly chiral macromolecules, including proteins. How L-chiral proteins emerged from demi-chiral mixtures is unknown. Our simulations show that, compared to contemporary proteins, demi-chiral proteins have shorter regular secondary structures due to fewer internal hydrogen bonds, but similar global folds and small molecule binding sites. Demi-chiral proteins contain L-chiral substructures matching native active site geometries. Among the most frequently generated enzymes with native active site residues are ancient functions associated with metabolism and replication. This suggests that demi-chiral proteins could engage in early metabolism, creating the feedback loop for transcription and cell formation partly responsible for life’s emergence. Living systems have chiral molecules, e.g., native proteins that almost entirely contain L-amino acids. How protein homochirality emerged from a background of equal numbers of L and D amino acids is among many questions about life’s origin. The origin of homochirality and its implications are explored in computer simulations examining the stability and structural and functional properties of an artificial library of compact proteins containing 1:1 (termed demi-chiral), 3:1, and 1:3 ratios of D:L and purely L or D amino acids generated without functional selection. Demi-chiral proteins have shorter secondary structures and fewer internal hydrogen bonds and are less stable than homochiral proteins. Selection for hydrogen bonding yields a preponderance of L or D amino acids. Demi-chiral proteins have native global folds, including similarity to early ribosomal proteins, similar small molecule ligand binding pocket geometries, and many constellations of L-chiral amino acids with a 1.0-Å RMSD to native enzyme active sites. For a representative subset containing 550 active site geometries matching 457 (2) 4-digit (3-digit) enzyme classification (E.C.) numbers, native active site amino acids were generated at random for 472 of 550 cases. This increases to 548 of 550 cases when similar residues are allowed. The most frequently generated sequences correspond to ancient enzymatic functions, e.g., glycolysis, replication, and nucleotide biosynthesis. Surprisingly, even without selection, demi-chiral proteins possess the requisite marginal biochemical function and structure of modern proteins, but were thermodynamically less stable. If demi-chiral proteins were present, they could engage in early metabolism, which created the feedback loop for transcription and cell formation.
Evaluating the relationship between tooth color and enamel thickness, using twin flash photography, cross-polarization photography, and spectrophotometer.

OBJECTIVES To understand (a) the effects of labial enamel on tooth color (b) relationship of color data taken by nonpolarized (NP), cross-polarization photography (CP), and spectrophotometry (SP). MATERIALS AND METHODS Fifty extracted human maxillary incisors were coated with resin on their palatal surfaces. Their color was measured with NP, CP, and SP and their dimensions were scanned by an intraoral scanner. The labial enamel was removed using a modified selective enamel demineralization technique. Tooth dimensions and color were recorded again. The differences in the labial enamel thickness (ΔT) and color (∆E*00 and ∆L*, ∆a*, ∆b*) were statistically analyzed with the Pearson correlation coefficient and simple linear regression. RESULTS In CP and SP methods, ΔT and ∆E*00 were weakly to moderately positively correlated (r = .38 and .27). In NP, CP, and SP methods, ∆T and ∆b* are weakly positively correlated (r = .27, .27 and .29). The color data of three measuring methods were highly positively correlated (r > .8). A linear relationship between ∆E*00 and ∆T were found (CP and SP groups). CONCLUSIONS (a) Thicker labial enamel has a greater impact on tooth color. (b) Reducing labial enamel thickness shifts the tooth color toward yellow. (c) Tooth color measured from the three methods were highly correlated. CLINICAL SIGNIFICANCE Knowing the relationship between enamel thickness and tooth color, a clinician can better predict the stump shade before tooth preparation. Due to the highly correlated measuring outcomes, it is reasonable to combine these three methods during shade matching.
Axon TRAP reveals learning-associated alterations in cortical axonal mRNAs in the lateral amygdala

Local translation can support memory consolidation by supplying new proteins to synapses undergoing plasticity. Translation in adult forebrain dendrites is an established mechanism of synaptic plasticity and is regulated by learning, yet there is no evidence for learning-regulated protein synthesis in adult forebrain axons, which have traditionally been believed to be incapable of translation. Here, we show that axons in the adult rat amygdala contain translation machinery, and use translating ribosome affinity purification (TRAP) with RNASeq to identify mRNAs in cortical axons projecting to the amygdala, over 1200 of which were regulated during consolidation of associative memory. Mitochondrial and translation-related genes were upregulated, whereas synaptic, cytoskeletal, and myelin-related genes were downregulated; the opposite effects were observed in the cortex. Our results demonstrate that axonal translation occurs in the adult forebrain and is altered after learning, supporting the likelihood that local translation is more a rule than an exception in neuronal processes.
Toric Spines at a Site of Learning

Abstract We discovered a new type of dendritic spine. It is found on space-specific neurons in the barn owl inferior colliculus, a site of experience-dependent plasticity. Connectomic analysis revealed dendritic protrusions of unusual morphology including topological holes, hence termed “toric” spines (n = 76). More significantly, presynaptic terminals converging onto individual toric spines displayed numerous active zones (up to 49) derived from multiple axons (up to 11) with incoming trajectories distributed widely throughout 3D space. This arrangement is suited to integrate input sources. Dense reconstruction of two toric spines revealed that they were unconnected with the majority (∼84%) of intertwined axons, implying a high capacity for information storage. We developed an ex vivo slice preparation and provide the first published data on space-specific neuron intrinsic properties, including cellular subtypes with and without toric-like spines. We propose that toric spines are a cellular locus of sensory integration and behavioral learning.
Communities of Arbuscular Mycorrhizal Fungi in the Roots of Pyrus pyrifolia var. culta (Japanese Pear) in Orchards with Variable Amounts of Soil-Available Phosphorus

The United Graduate School of Agricultural Sciences, Tottori University, 4–101 Koyama-Minami, Tottori 680–8553, Japan; Tottori Prefectural Agriculture and Forest Research Institute, Horticultural Experiment Center, Hokuei, Tohaku, Tottori 689–2221, Japan; Depertment of Natural and Environmental Science, Teikyo University of Science, 2525 Yatsusawa, Uenohara 409–0193, Japan; and Fungus/Mushroom Resource and Research Center, Faculty of Agriculture, Tottori University, 4–101 Koyama-Minami, Tottori 680–8553, Japan
In vitro killing of canine strains of Staphylococcus pseudintermedius and Escherichia coli by cefazolin, cefovecin, doxycycline and pradofloxacin over a range of bacterial densities

Background Bacterial densities likely fluctuate during infection and may exceed the bacterial density used in susceptibility testing. As such, investigation of bacterial killing by antibiotics over a range of varying bacterial densities may provide important differences between compounds and could impact drug selection for therapy. Hypothesis/Objectives To measure killing of clinical isolates of Staphylococcus pseudintermedius and Escherichia coli by cefazolin, cefovecin, doxycycline and pradofloxacin at clinically relevant (minimum inhibitory, mutant prevention, maximum serum and maximum tissue) drug concentrations against varying densities of bacteria. Animals/Materials Bacterial strains collected from dogs with urinary tract infections were studied. Methods and materials High bacterial densities ranging from 106 to 109 colony forming units (cfu)/mL were exposed to minimum inhibitory, mutant prevention, blood and tissue drug concentrations, and the percentages (log10) of viable cells killed following 30 min, 1, 2, 4, 6, 12 and 24 h of drug exposure were quantified. Results Doxycycline exhibited bacteriostatic properties with less killing than the other three agents. For example, at a 107 cfu/mL density of S. pseudintermedius, more cells were killed by pradofloxacin (P < 0.0001) and cefovecin (P = 0.0014) but not cefazolin when compared to doxycycline at the maximum serum drug concentration following 12 h of drug exposure. Conclusions and clinical importance Differences were seen between some drugs in the speed and extent of bacterial killing; this could be clinically important and may impact drug selection and length of therapy.
Potential predictors of hospital length of stay and hospital charges among patients with all-terrain vehicle injuries in rural Northeast Texas

Abstract: Background: All-Terrain Vehicles (ATVs) have become popular for recreation use in recent years. Texas has had more ATV related fatalities than any other state in the nation, with rural Northeast Texas having even higher rates of injuries. There is limited data examining the relationship between ATV injuries and the length of hospital stay, as well as hospital costs. This paper examines both issues in children as well as adults. Methods: The regional trauma registry was analyzed for all ATV related injuries between January 2011- October 2016. Injury Severity Score, Glasgow Coma Scale and if they are seen at a Level I Trauma center are predictive for both hospital length of stay and charges. Results: Length of Stay was predicted positively by Injury Severity Score, Emergency Department Respi-ration Rate and facility at which patients were treated and negatively by Glasgow Coma Scale. Hospital charges were predicted positively by age, Injury Severity Score, facility of treatment, means of transportation, and Emergency Department pulse and negatively by Glasgow Coma Scale. Conclusions: The study found that vital signs can be useful in predicting length of stay and hospital charges. This study not only confirms the findings of other studies regarding what predictors can be used, but expands the research into rural traumatic injuries. It is hoped that this data can help contribute to the development of algorithms to predict which patients will be most likely to require resource intensive treatment.
Evaluating Cross-resistance Between Vip and Cry Toxins of Bacillus thuringiensis

Abstract Crops genetically engineered to produce insecticidal proteins from the bacterium Bacillus thuringiensis (Bt) have revolutionized control of some major pests. Some recently introduced Bt crops make Vip3Aa, a vegetative insecticidal protein (Vip), which reportedly does not share binding sites or structural homology with the crystalline (Cry) proteins of Bt used widely in transgenic crops for more than two decades. Field-evolved resistance to Bt crops with practical consequences for pest control includes 21 cases that collectively reduce the efficacy of nine Cry proteins, but such practical resistance has not been reported yet for any Vip. Here, we review previously published data to evaluate cross-resistance between Vip and Cry toxins. We analyzed 31 cases based on 48 observations, with each case based on one to five observations assessing cross-resistance from pairwise comparisons between 21 resistant strains and 13 related susceptible strains of eight species of lepidopteran pests. Confirming results from previous analyses of smaller data sets, we found weak, statistically significant cross-resistance between Vip3 and Cry1 toxins, with a mean of 1.5-fold cross-resistance in 21 cases (range: 0.30–4.6-fold). Conversely, we did not detect significant positive cross-resistance between Vip3 toxins and Cry2Ab. Distinguishing between weak, significant cross-resistance, and no cross-resistance may be useful for better understanding mechanisms of resistance and effectively managing pest resistance to Bt crops.
Prognostic value of infiltrating immune cells in clear cell renal cell carcinoma (ccRCC)

In this study, we attempted to evaluate the prognostic value of infiltrating immune/stromal cells in clear cell renal cell carcinoma (ccRCC), by using the immune scores and stromal scores based on the “Estimation of STromal and Immune cells in MAlignant Tumours using Expression data” algorithm to represent the levels of infiltrating immune cells and stromal cells. We found that the infiltrating immune cells were associated with poor prognosis of ccRCC. To assess the role of infiltrating immune cells in ccRCC cells, first, we performed differentially expressed genes analysis and functional analysis for validation. The results showed that the underlying mechanism by which infiltrating immune cells promoted cancer progression involved in regulating the nuclear division, angiogenesis, and immune response. Next, we investigated the relationship between infiltrating immune cells and mutations in ccRCC cells. We found that the infiltrating immune cells have certain effects on genetic mutations. In conclusion, infiltrating immune cells within the tumor microenvironment can be used to predict prognosis in ccRCC.
Numerical study of multiple injections under diesel engine conditions

In this study, numerical simulations of an n-dodecane spray flame in a constant volume chamber under diesel engine conditions – known as Spray A – with multiple-injections (0.5 / 0.5 dwell / 1.0 ms injection) have been carried out using the transported probability density function (TPDF) method in the Reynolds-averaged Navier-Stokes (RANS) framework. The realizable k−ε turbulence model was used to provide the turbulence information to the TPDF solver. The micro-mixing term was closed using the Interaction by Exchange with the Mean (IEM) model. The objective of the present study is to compare simulation results of soot and nitrogen oxide (NO) mass from a single and a double injection case with the same total injected fuel mass. The fuel-air mixing for the two different cases has been analysed in terms of mixture fraction probability density function (PDF) evolution. The results show that the ignition of the second injection is promoted by the high temperature gases originated from the combustion of the first injection with sufficiently low scalar dissipation rate. This advanced ignition of the second injection results in the increase of local temperature and equivalence ratio, resulting in an increase of the formed soot mass by a factor of four compared to the first injection. The double injection schedule reduced the NO mass in comparison with single injection and the net soot formation and oxidation rate where found to increase when fuel splitting was applied.
THE MEDIATING EFFECT OF INFORMATION SYSTEM ARTEFACT (ISA) BETWEEN EMPLOYEE BEHAVIOUR AND ORGANIZATIONAL RESILIENCE

The purpose of this paper is to analyse the relationship between the employee behaviour with Information System Artefact (ISA). However, this relationship does not arise directly. The authors argue that the employee behaviour in organization has a positive effect on the use of Information System Artefact (ISA) tools and processes due to employees are facing a lot of challenges in handling complexity of job and this subsequently increase human errors. Increase of human errors in organization contributes to disasters thus impact the organizational resilience. Information System Artefact (ISA) and the usage are tools to simplify employees work practises and processes to achieve better organizational resilience. This study aims to determine whether Information System Artefact (ISA) mediate in the relationship between employee behaviour in organization and organization resilience on companies listed under Malaysian Digital Economic Corporation Sdn. Bhd. (MDEC) during the period of 2000 to 2018.The main finding is that the role of employees behaviour positively affects the use of Information System Artefact (ISA) thus enhances organization resilience. The study is a new contribution for academics and practitioners, since the Information System Artefact (ISA) and behaviours is tested in education practises for adult learners and students instead over employees on disaster management practices and organizational resilience. In addition, the effect of artefact has been studied in organization routines and security context instead of in disaster management. The study has two practical implications for companies to continue working for sustainability. The first practical implication is the need to work the processes that are aimed at the exchange of information that are simplified both internally and externally to the organization. The second practical implication, that has been determined several enhancement initiatives for resilient organizations that may contribute towards the strategic goals of Sendai’s framework (2015–2020). These enhancement initiatives help to cultivate a new dimension of behavioural capacities among employees. Moreover, it raises awareness of risk with relevant lead and follows indicators to recognise trend, emerging risks, and opportunities. Thus, risk attitude for each main type of operational risk must be identified for guidance using symbols or artefacts that can position the risk.
Neuropsychological Trajectories Associated with Adolescent Alcohol and Cannabis Use: A Prospective 14-Year Study

Abstract Objectives: Alcohol and cannabis remain the substances most widely used by adolescents. Better understanding of the dynamic relationship between trajectories of substance use in relation to neuropsychological functioning is needed. The aim of this study was to examine the different impacts of within- and between-person changes in alcohol and cannabis use on neuropsychological functioning over multiple time points. Methods: Hierarchical linear modeling examined the effects of alcohol and cannabis use on neuropsychological functioning over the course of 14 years in a sample of 175 adolescents (aged 12–15 years at baseline). Results: Time-specific fluctuations in alcohol use (within-person effect) predicted worse performance across time on the Wechsler Abbreviated Scale of Intelligence Block Design subtest (B = −.05, SE = .02, p = .01). Greater mean levels of percent days of cannabis use across time (between-person effect) were associated with an increased contrast score between Delis–Kaplan Executive Function System Color Word Inhibition and Color Naming conditions (B = .52, SE = .14, p < .0001) and poorer performance over time on Block Design (B = −.08, SE = .04, p = .03). Neither alcohol and/nor cannabis use over time was associated with performance in the verbal memory and processing speed domains. Conclusions: Greater cumulative cannabis use over adolescence may be linked to poorer inhibitory control and visuospatial functioning performance, whereas more proximal increases in alcohol consumption during adolescence may drive alcohol-related performance decrements in visuospatial functioning. Results from this prospective study add to the growing body of literature on the impact of alcohol and cannabis use on cognition from adolescent to young adulthood.
Onlay versus Inlay humeral steam in Reverse Shoulder Arthroplasty (RSA): clinical and biomechanical study

Background and aim of the work: Reverse shoulder arthroplasty (RSA) is becoming treatment of choice in glenohumeral arthropathies with massive lesion of the rotator cuff, due to a gradual extension of indications and new designs that provide better outcome. In this study we compared two different reverse shoulder prosthesis designs, defined as Inlay (or typical Grammont type) and a relatively new model defined as Onlay (that preserves tuberosity bone stock). We analyzed clinical, biomechanical and radiological outcomes, as well as complications of RSA in these two groups. Methods: We performed a prospective study on a population of 42 patients undergoing Reverse Shoulder Replacement by a single expert surgeon. We consider 21 patients (group A) who underwent to reverse shoulder replacement with a curved onlay steam with 145° inclination (Ascend Flex group, Wright medical, Memphis, TN, USA) and 21 patients who underwent to reverse shoulder replacement with a traditional Inlay Grammont steam (Modular Shoulder System SMR, Systema Multiplana Randelli; Lima-LTO, San Daniele del Friuli, Italy) between August 2010 and October 2018. We studied the following items: active range of motion (AROM), radiological parameters (lateralization shoulder angle LSA, Distalization Shoulder Angle DSA), functional scale (Constant-Murley Score), post-operative complications (infection, aseptical implant mobilitazion, residual pain, scapular notching, fractures, tuberosity reabsorbtion, dislocation, bleedings, nerve palsy, pulmonary embolus). Results: A significant improvement in ROM and functional score (Constant Shoulder Score) were observed in both groups. Group A (Onlay design 145°, medial tray) provides improvement in adduction, extension and external rotation compared to group B. No significant differences were found in abduction, external rotation and forward flexion. At 6 months follow-up, pain relief was detected in all patients. Although complications occur in a high percentage of patients in literature, no postoperative complications were observed in our cases series. Conclusions: Our results showed how RSA is a real solution to improve quality of life and to restore pain-free shoulder ROM in patients where cuff tear arthropathy occurs. Onlay design 145° may provides better active external rotation, extension, adduction: it is necessary to continue follow up and include more cases to prove these data. (www.actabiomedica.it)