Miracle-dz/UniFAR-FTUs huggingface dataset:
ENDOBACTERIA IN THE DIATOM PINNULARIA (BACILLARIOPHYCEAE). II. HOST CELL CYCLE‐DEPENDENT TRANSLOCATION AND TRANSIENT CHLOROPLAST SCARS 1

Rod‐shaped bacteria were found together with the “secondary chloroplast” in the endoplasmic reticulum (ER) in the pennate diatom Pinnularia. During the host interphase, bacteria bore cavities into the chloroplast and interacted with thylakoids, forming a functional unit with the plastid of the engulfed and reduced eukaryotic endocytobiont, without perforating the relict cell membrane and the chloroplast envelope. Fluorescently labeled antibodies directed against the large subunit of RUBISCO elicited the same pattern as DAPI–DNA complexes. In pre‐prophase, bacteria started to dissociate from the plastids and left scars at their previous locations. In profile, scars appeared as granular amorphous regions interrupting several stacks of thylakoids, whereas images of glancing sections showed foci of circumscribed spiral domains. The vortex pattern was interpreted as the result of a screwing movement of the bacteria during their withdrawal, initiated while structurally still connected to the thylakoids. Scars became effaced, and thylakoids reoriented during prophasic translocation of the complex plastid from the girdle to the valve. In the transition to prophase, bacteria were found as clusters inside ER cisternae near the nucleus, where the microtubule‐organizing center was accompanied by the spindle precursor. Microtubules were seen to be aligned with ER profiles (containing bacteria). TEM images indicated that intracellular long‐distance transport is controlled by the host cytoskeleton acting upon the ER. Restricted to this stage, bacteria appeared to divide and occasionally bore tentacle‐like appendages. Their intraluminal localization at the nucleus in prophase, near the new plasmalemma after cleavage, and their return to the chloroplasts shortly afterward revealed a cell cycle‐dependent translocation with the ER as circulatory system and, together with the obvious retardation of their division cycle, a domestication by the host.
TightCap: 3D Human Shape Capture with Clothing Tightness Field

In this article, we present TightCap, a data-driven scheme to capture both the human shape and dressed garments accurately with only a single three-dimensional (3D) human scan, which enables numerous applications such as virtual try-on, biometrics, and body evaluation. To break the severe variations of the human poses and garments, we propose to model the clothing tightness field—the displacements from the garments to the human shape implicitly in the global UV texturing domain. To this end, we utilize an enhanced statistical human template and an effective multi-stage alignment scheme to map the 3D scan into a hybrid 2D geometry image. Based on this 2D representation, we propose a novel framework to predict clothing tightness field via a novel tightness formulation, as well as an effective optimization scheme to further reconstruct multi-layer human shape and garments under various clothing categories and human postures. We further propose a new clothing tightness dataset of human scans with a large variety of clothing styles, poses, and corresponding ground-truth human shapes to stimulate further research. Extensive experiments demonstrate the effectiveness of our TightCap to achieve the high-quality human shape and dressed garments reconstruction, as well as the further applications for clothing segmentation, retargeting, and animation.
Overview of Polkadot and its Design Considerations

In this paper we describe the design components of the heterogenous multi-chain protocol Polkadot and explain how these components help Polkadot address some of the existing shortcomings of blockchain technologies. At present, a vast number of blockchain projects have been introduced and employed with various features that are not necessarily designed to work with each other. This makes it difficult for users to utilise a large number of applications on different blockchain projects. Moreover, with the increase in number of projects the security that each one is providing individually becomes weaker. Polkadot aims to provide a scalable and interoperable framework for multiple chains with pooled security that is achieved by the collection of components described in this paper.
Illuminating a tadpole’s metamorphosis II: observing the ongoing transformation with ALMA

We present new Atacama Large Millimeter/submillimeter Array (ALMA) observations of the tadpole, a small globule in the Carina Nebula that hosts the HH 900 jet+outflow system. Our data include $^{12}$CO, $^{13}$CO, C$^{18}$O J=2-1, $^{13}$CO, C$^{18}$O J=3-2, and serendipitous detections of DCN J=3-2 and CS J=7-6. With angular resolution comparable to the Hubble Space Telescope (HST), our data reveal for the first time the bipolar molecular outflow in CO, seen only inside the globule, that is launched from the previously unseen jet-driving protostar (the HH 900 YSO). The biconical morphology joins smoothly with the externally irradiated outflow seen in ionized gas tracers outside the globule, tracing the overall morphology of a jet-driven molecular outflow. Continuum emission at the location of the HH 900 YSO appears to be slightly flattened perpendicular to outflow axis. Model fits to the continuum have a best-fit spectral index of $\sim 2$, suggesting cold dust and the onset of grain growth. In position-velocity space, $^{13}$CO and C$^{18}$O gas kinematics trace a C-shaped morphology, similar to infall profiles seen in other sources, although the global dynamical behaviour of the gas remains unclear. Line profiles of the CO isotopologues display features consistent with externally heated gas. We estimate a globule mass of $\sim 1.9$ M$_{\odot}$, indicating a remaining lifetime of $\sim 4$ Myr, assuming a constant photoevaporation rate. This long globule lifetime will shield the disk from external irradiation perhaps prolonging its life and enabling planet formation in regions where disks are typically rapidly destroyed.
Bioavailability of α-tocopherol stereoisomers in rats depends on dietary doses of all-rac- or RRR-α-tocopheryl acetate

The biological function of the stereoisomers of α-tocopherol is believed to depend on their bioavailability. Assessment of bioavailability within the body is therefore considered to be a good and easy way to predict biological value. The separation of α-tocopherol methyl ethers by chiral column HPLC is a good and easy tool with which to study the distribution of α-tocopherol stereoisomers. The objective of this investigation was to evaluate the bioavailability and distribution of the stereoisomers of α-tocopherol in the plasma and tissue in growing rats fed 25, 50, 100 or 200mg/kg diet of either RRR- or all-rac-α-tocopheryl acetate for 10d. The ratio between the two vitamin E sources based on their α-tocopherol concentration in plasma and tissues varied in the plasma between 1·04 and 1·74 and in tissues, ratios of 0·84–1·24 for liver, 0·34–1·59 for lung and 0·75–1·50 for spleen were obtained. An increasing dietary level of all-rac-α-tocopheryl acetate decreased the proportion of RRR-α-tocopherol, whereas the other stereoisomers were not affected. RRS-α-Tocopherol was present in the highest proportion, followed by RSR-, RSS- and RRR-α-tocopherol. In contrast to the other tissues and plasma, the liver contained the highest proportion (29–33%) of the four 2S stereoisomers of total α-tocopherol. Rats fed RRR-α-tocopheryl acetate for 10d showed a significant increase in the plasma and tissue content of RRR-α-tocopherol and a simultaneous decrease in the other three 2R isomers, whereas the absolute content of the 2S isomers was unaffected. In adipose tissue, concentrations of the three synthetic 2R isomers remained constant, whereas there was a steep increase in the content of RRR-α-tocopherol.
Enriched In-Order Linearization for Faster Sequence-to-Sequence Constituent Parsing

Sequence-to-sequence constituent parsing requires a linearization to represent trees as sequences. Top-down tree linearizations, which can be based on brackets or shift-reduce actions, have achieved the best accuracy to date. In this paper, we show that these results can be improved by using an in-order linearization instead. Based on this observation, we implement an enriched in-order shift-reduce linearization inspired by Vinyals et al. (2015)’s approach, achieving the best accuracy to date on the English PTB dataset among fully-supervised single-model sequence-to-sequence constituent parsers. Finally, we apply deterministic attention mechanisms to match the speed of state-of-the-art transition-based parsers, thus showing that sequence-to-sequence models can match them, not only in accuracy, but also in speed.
Star cluster formation and cloud dispersal by radiative feedback: dependence on metallicity and compactness

We study star cluster formation in various environments with different metallicities and column densities by performing a suite of three-dimensional radiation hydrodynamics simulations. We find that the photoionization feedback from massive stars controls the star formation efficiency (SFE) in a star-forming cloud, and its impact sensitively depends on the gas metallicity $Z$ and initial cloud surface density $\Sigma$. At $Z=1~Z_{\odot}$, SFE increases as a power law from 0.03 at $\Sigma = 10~M_{\odot}{\rm pc^{-2}}$ to 0.3 at $\Sigma = 300~M_{\odot}{\rm pc^{-2}}$. In low-metallicity cases $10^{-2}- 10^{-1} Z_{\odot}$, star clusters form from atomic warm gases because the molecule formation time is not short enough with respect to the cooling or dynamical time. In addition, the whole cloud is disrupted more easily by expanding H{\sc ii} bubbles which have higher temperature owing to less efficient cooling. With smaller dust attenuation, the ionizing radiation feedback from nearby massive stars is stronger and terminate star formation in dense clumps. These effects result in inefficient star formation in low-metallicity environments: the SFE drops by a factor of $\sim 3$ at $Z=10^{-2}~Z_{\odot}$ compared to the results for $Z=1~Z_{\odot}$, regardless of $\Sigma$. Newborn star clusters are also gravitationally less bound. We further develop a new semi-analytical model that can reproduce the simulation results well, particularly the observed dependencies of the SFEs on the cloud surface densities and metallicities.
Pandemic News: Facebook Pages of Mainstream News Media and the Coronavirus Crisis - A Computational Content Analysis

The unfolding of the COVID-19 pandemic has been an unprecedented challenge for news media around the globe. While journalism is meant to process yet unknown events by design, the dynamically evolving situation affected all aspects of life in such profound ways that even the routines of crisis reporting seemed to be insufficient. Critics noted tendencies to horse-race reporting and uncritical coverage, with journalism being too close to official statements and too affirmative of political decisions. However, empirical data on the performance of journalistic news media during the crisis has been lacking thus far. The current study analyzes the Facebook messages of journalistic news media during the early Coronavirus crisis, based on a large German data set from January to March 2020. Using computational content analysis methods, reach and interactions, topical structure, relevant actors, negativity of messages, as well as the coverage of fabricated news and conspiracy theories were examined. The topical structure of the near-time Facebook coverage changed during various stages of the crisis, with just partial support for the claims of critics. The initial stages were somewhat lacking in topical breadth, but later stages offered a broad range of coverage on Corona-related issues and societal concerns. Further, journalistic media covered fake news and conspiracy theories during the crisis, but they consistently contextualized them as what they were and debunked the false claims circulating in public. While some criticism regarding the performance of journalism during the crisis received mild empirical support, the analysis did not find overwhelming signs of systemic dysfunctionalities. Overall, journalistic media did not default to a uniform reaction nor to sprawling, information-poor pandemic news, but they responded with a multi-perspective coverage of the crisis.
Efeito da inoculação com isolados de fungos ectomicorrízicos sobre o desenvolvimento de mudas de Eucalyptus grandis Hill ex Maiden

No Estado do Rio Grande do Sul, os reflorestamentos de eucalipto tem se concentrado em solos com baixa fertilidade natural, e o desempenho dessas mudas podera depender da formacao da associacao ectomicorrizica. Nesse trabalho, avaliou-se o efeito da inoculacao dos isolados de fungos ectomicorrizicos UFSC-Pt116, UFSC-Pt188 e UFSC-SA9, individualmente e em mistura, sobre mudas de Eucalyptus grandis . As avaliacoes foram realizadas aos 30, 45, 60, 75 e 90 dias apos semeadura. A inoculacao individual do isolado fungico ectomicorrizico UFSC-Pt116 promoveu maior altura e massa seca da parte aerea. As mudas inoculadas com mistura dos isolados fungicos UFSC-Pt116 + UFSC-Pt188 + UFSC-SA9 acumularam maior quantidade de fosforo aos 90 dias. Para os teores de nitrogenio e potassio, e massa seca de raizes nao mostrou diferenca significativa entre os tratamentos.
Spatio‐temporal sharing between the European wildcat, the domestic cat and their hybrids

The European wildcat Felis silvestris silvestris, which can hybridize with the domestic cat Felis catus to produce fertile hybrids, is threatened by hybridization. To identify the behavioural processes that can affect interbreeding, we investigated the spatio-temporal sharing between wildcats, domestic cats and their hybrids (defined on their genotypes) in a rural area of north-eastern France where hybridization is frequent. Wildcats' and hybrids' home ranges were larger than those of domestic cats, and they did not vary according to body mass, season and reproductive period. The three types of cats had similar daily activity rhythms but the concordance between their space use patterns was low or null. Thus, a high spatio-temporal concordance is not a prerequisite for hybridization. Rare excursions made by the cats outside of their home ranges may be at the origin of interbreeding. Moreover, hybrids may play a key role in hybridization by behaving as wildcats and by sharing at least a part of their range with them as well as with domestic cats. Behavioural barriers between them and wildcats may not exist because of their similarity in morphology and spatial behaviour.
Expression profile of circular RNAs in the peripheral blood of neonates with hypoxic-ischemic encephalopathy

Circular RNAs (circRNAs) are a class of non-coding RNAs that participate in various biological processes. However, the function of circRNAs in neonatal hypoxic-ischemic encephalopathy (HIE) is not fully understood. In the present study, the differentially expressed circRNAs in the peripheral blood of neonates with HIE and control samples were characterized by a microarray assay. A total of 456 circRNAs were significantly differentially expressed in the peripheral blood of neonates with HIE, with 250 upregulated and 206 downregulated circRNAs in HIE compared with the control samples. Reverse transcription-quantitative PCR was used to investigate specific circRNAs. Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes pathway analyses were used to determine the function of the parent genes of the dysregulated circRNAs. In addition, microRNAs that may be associated with specific circRNAs were predicted using miRanda. Collectively, the present results indicated the potential importance of circRNAs in the peripheral blood of neonates with HIE.
Autoantibody-Negative Immune-Mediated Necrotizing Myopathy Responds to Early and Aggressive Treatment: A Case Report

Immune-mediated necrotizing myopathy (IMNM) is a rare idiopathic disease that is further classified by the presence of serum antibodies. A modicum of patients lack serum autoantibodies. Significantly elevated creatine kinase (CK) is highly characteristic of IMNM. The pathophysiology of IMNM is partially understood, and effective treatment options are limited, particularly in patients without serum autoantibodies. In this case, we report a 76-year-old male presenting with a four-month history of proximal muscle weakness. Muscle biopsy and serology confirmed the diagnosis of autoantibody-negative IMNM. Early and aggressive treatment with high-dose steroids and a course of intravenous immunoglobulin significantly reduced the patient’s symptoms and CK within three months. This case serves as an example of an effective treatment outcome in a patient with this rare idiopathic necrotizing myopathy.
FROST FOLLOWED THE PLOW: IMPACTS OF DEFORESTATION ON THE CLIMATE OF THE UNITED STATES

The modern vegetated landscape of the United States little resembles the “natural” landscape prior to colonial settlement. Two 10-yr climate simulations with a global climate model using natural and modern vegetation maps for land surface boundary conditions showed that the conversion of forest to cropland in the eastern and central United States cooled climate. Mean annual surface air temperature decreased by 0.6°–1.0°C in the United States east of 100° W. The decrease in daily maximum temperature exceeded that for daily minimum temperature for a decreased diurnal temperature range of about 0.6°C, averaged over the year. The cooling was greatest in the Midwest in summer and autumn, when daily mean temperature decreased by >0.5° and 2.5°C, respectively; daily maximum temperature decreased by 1°–3°C; and diurnal temperature range decreased by about 1°C. U.S. temperature records show that much of the 1800s was anomalously cold, particularly in summer and autumn in the Midwest. Although this was likely cause.
The Holocene Diatom Flora of Marine Bays in the Windmill Islands, East Antarctica

Abstract The Holocene diatom flora identified in three sediment cores from marine bays in the Windmill Islands (East Antarctica) is described and depicted for the first time. One hundred and twenty-four diatom taxa could be identified of which eighty-one taxa have a circum-Antarctic distribution. All taxa are listed in a table together with appropriate references and remarks on ecology and biogeography. The most diverse genera are Fragilariopsis, Navicula and Thalassiosira. Some taxa (e.g., Chaetoceros spp., Fragilariopsis curta, F. cylindrus, Navicula glaciei and Synedropsis spp.) have the potential to be used as indicator taxa for the reconstruction of palaeoceanographic conditions in the Windmill Islands.
Musa spp. germplasm management: microsatellite fingerprinting of USDA-ARS National Plant Germplasm System Collection

The USDA–ARS Tropical Agriculture Research Station (TARS) is responsible for conserving germplasm of a number of important agricultural crop species. Its banana (Musa spp.) collection is comprised of diploid, triploid, and tetraploid accessions of cultivated, ornamental, wild, and synthetic hybrid accessions. To estimate genetic diversity, identify gaps, determine integrity, and generate clonal reference multilocus DNA profiles for a total of 175 accessions in the collection, a set of 22 microsatellite markers developed in the framework of the Generation Challenge Program (www.generationcp.org/, accessed 30 June 2014) by Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement and recommended by the Global Musa Genomics Consortium were screened with an additional 15 reference DNA samples. Twenty-one of the 22 microsatellite markers amplified well and generated a total of 302 alleles with an average number of 14.4 alleles per locus. In general, profiles were reproducible and consistent for the 21 loci when clonal field and tissue culture plants were compared with reference samples. The average number of alleles and gene diversity estimates demonstrated substantial genetic diversity in the collection. Principal coordinate and cluster analyses grouped accessions in the collection according to their ploidy level and genomic compositions. Markers that were used in the study distinguished accessions to the subgroup level and identified mislabeled accessions, notably in the tissue culture collection where phenotypic differences are difficult to observe. The accessions and fingerprint profiles for the TARS collection are available through the USDA National Plant Germplasm System, Germplasm Resource Information Network (GRIN-Global) database
Yield of white clover populations in mixture with contrasting perennial ryegrasses

A field experiment was established in May 1986 in which four white-clover populations originating in Switzerland, and a bred variety, Menna, were grown in binary mixtures with their ‘co-existing’ perennial ryegrasses and three other bred ryegrasses— Aurora, Talbot and Melle. The productivity of both components of the mixtures was measured by cutting samples in October 1986 (after establishment) and on five occasions during the growing season in 1987, Substantial differences were observed between clover yields in different mixtures, and the yield ranking of clover was found to vary with companion grass. It was concluded that the interaction between grass and clover populations originated at an early stage in sward development, being evident in both the 1986 establishment cut and the spring cut of the following year. The implications of these results for the formulation of breeding objectives and the evaluation of breeding material are briefly discussed.
Feeding ecology of two megrims Lepidorhombus boscii and Lepidorhombus whiffiagonis in the western Mediterranean (Gulf of Valencia, Spain)

The stomach contents of 344 four-spotted megrim, (Lepidorhombus boscii) and 159 megrim (Lepidorhombus whiffiagonis), off the eastern coast of the Gulf of Valencia (Spain), were analysed. The two species examined do not appear to have very similar diets, based on the species composition of prey. The vacuity coefficient is not high for any of the species, the main food being Crustacea (Decapoda and Mysidacea). Also Amphipoda and Teleostei are components of the diet. Variations in the food of both fish related to their length show few small crustaceans as prey of the major specimens. Finally, there was evidence for seasonal variation of the quality and quantity of the food consumed. There was no great dietary overlap between these two species.
The Growth Pattern and Structure of Callus from the Red Alga Laurencia sp. (Rhodophyta, Ceramiales) Compared to Shoot Regeneration

The occurrence of several forms of disorganized growth (filamentous, groups of cells and compact cell masses) has been reported in seaweed tissue culture as callus or callus-like, and in nature as galls, tumours or callus. Laurencia sp. formed callus in culture. To know whether callus or callus-like types of growth also occurred during regeneration, calluses were induced in explants, excised and cultivated separately. The growth pattern followed by these calluses and their main structural features, revealed by light and electron microscopy, were compared with those occurring on shoot regenerating explants in culture, and in wounded thallus regenerating in nature (.)