Miracle-dz/UniFAR-FTUs huggingface dataset:
In silico analysis and experimental validation shows negative correlation between miR-1183 and cell cycle progression gene 1 expression in colorectal cancer

MicroRNAs (miRNAs) are small noncoding RNAs that post-transcriptionally regulate gene expression by binding to the 3’ untranslated regions (UTR) of target genes. Aberrant expression of miRNAs can lead to disease, including cancer. Colorectal cancer (CRC) is one of the leading causes of cancer-related deaths worldwide. Among several factors, differential expression of miRNA can have serious consequences on disease progression. This study was designed to computationally identify and experimentally verify strong miRNA candidates that could influence CRC progression. In silico analysis of publicly available gene expression microarray datasets revealed significant upregulation of miR-1183 in CRC. Comparison of mRNA microarray expression data with predicted miR-1183 targets led to the identification of cell cycle progression gene 1 (CCPG1) as strong, negatively correlated miR-1183 target. Expression analysis by means of quantitative PCR validated the inverse correlation between miR-1183 and CCPG1 in colorectal cancer tissues. CCPG1 indirectly modulates the cell cycle by interacting with the PH/DH domain of Dbs (Rho-specific guanine nucleotide exchange factor). Interestingly, the computational analysis also showed that miR-1183 is upregulated in liver and gastric cancer. This finding is notable as the liver and stomach are the primary metastatic sites for colorectal cancer and hepatocellular carcinoma respectively. This novel finding highlights the broader implications of miR-1183 dysregulation beyond primary CRC, potentially serving as a valuable prognostic marker and a therapeutic target for both primary and metastatic CRC.
Type VII secretion system and its effect on group B Streptococcus virulence in isolates obtained from newborns with early onset disease and colonized pregnant women

Introduction GBS may cause a devastating disease in newborns. In early onset disease of the newborn the bacteria are acquired from the colonized mother during delivery. We characterized type VII secretion system (T7SS), exporting small proteins of the WXG100 superfamily, in group B Streptococci (GBS) isolates from pregnant colonized women and newborns with early onset disease (EOD) to better understand T7SS contribution to virulence in these different clinical scenarios. Methods GBS genomes [N=33, 17 EOD isolates (serotype III/ST17) and 16 colonizing isolates (12 serotype VI/ST1, one serotype VI/ST19, one serotype VI/ST6, and two serotype 3/ST19)] were analyzed for presence of T7SS genes and genes encoding WXG100 proteins. We also perform bioinformatic analysis. Galleria mellonella larvae were used to compare virulence between colonizing, EOD, and mutant EOD isolates. The EOD isolate number 118659 (III/ST17) was used for knocking out the essC gene encoding a membrane-bound ATPase, considered the driver of T7SS. Results Most GBS T7SS loci encoded core component genes: essC, membrane-embedded proteins (essA; essB), modulators of T7SS activity (esaA; esaB; esaC) and effectors: [esxA (SAG1039); esxB (SAG1030)]. Bioinformatic analysis indicated that based on sequence type (ST) the clinicalGBS isolates encode at least three distinct subtypes of T7SS machinery. In all ST1isolates we identified two copies of esxA gene (encoding putative WXG100proteins), when only 23.5% of the ST17 isolates harbored the esxA gene. Five ST17isolates encoded two copies of the essC gene. Orphaned WXG100 molecule(SAG0230), distinct from T7SS locus, were found in all tested strains, except inST17 strains where the locus was found in only 23.5% of the isolates. In ST6 andST19 isolates most of the structure T7SS genes were missing. EOD isolates demonstrated enhanced virulence in G. mellonella modelcompared to colonizing isolates. The 118659DessC strain was attenuated in itskilling ability, and the larvae were more effective in eradicating 118659DessC. Conclusions We demonstrated that T7SS plays a role during infection. Knocking out the essC gene, considered the driver of T7SS, decreased the virulence of ST17 responsible for EOD, causing them to be less virulent comparable to the virulence observed in colonizing isolates.
Reasoning about Quality and Fuzziness of Strategic Behaviors

Temporal logics are extensively used for the specification of on-going behaviors of computer systems. Two significant developments in this area are the extension of traditional temporal logics with modalities that enable the specification of on-going strategic behaviors in multi-agent systems, and the transition of temporal logics to a quantitative setting, where different satisfaction values enable the specifier to formalize concepts such as certainty or quality. In the first class, SL (Strategy Logic) is one of the most natural and expressive logics describing strategic behaviors. In the second class, a notable logic is LTL[ℱ] , which extends LTL with quality operators. In this work, we introduce and study SL[ℱ] , which enables the specification of quantitative strategic behaviors. The satisfaction value of an SL[ℱ] formula is a real value in [0,1], reflecting “how much” or “how well” the strategic on-going objectives of the underlying agents are satisfied. We demonstrate the applications of SL[ℱ] in quantitative reasoning about multi-agent systems, showing how it can express and measure concepts like stability in multi-agent systems, and how it generalizes some fuzzy temporal logics. We also provide a model-checking algorithm for SL[ℱ] , based on a quantitative extension of Quantified CTL⋆ . Our algorithm provides the first decidability result for a quantitative extension of Strategy Logic. In addition, it can be used for synthesizing strategies that maximize the quality of the systems’ behavior.
Serum IgG4-negative IgG4-related disease with a cardiac mass: A case report

Rationale: Although IgG4-related disease (IgG4-RD) can affect various organs, its association with a cardiac mass is exceptionally rare. Here, we report a case of a woman with IgG4-RD and a cardiac mass and discuss 10 similar cases reported previously. Patient concerns: A 65-year-old woman was referred to our hospital for chest discomfort and back pain. Diagnoses: In accordance with the 2019 ACR/EULAR diagnostic criteria for IgG4-RD, she was diagnosed with IgG4-RD based on dense lymphocytic infiltration on histopathology, IgG/IgG4-positive cell ratio <40%, >10/hpf IgG4-positive cells on immunostaining, and paraspinal zone soft tissue lesions in the chest. Interventions: An external pacemaker was implanted for the complete atrioventricular block on the electrocardiogram. After the diagnosis of IgG4-RD, she was treated with glucocorticoids and rituximab. Outcomes: She remains under observation without disease recurrence. Lessons: IgG4-RD are usually treated with glucocorticoids; however, in cases of a cardiac mass, life-threatening complications may occur and surgery is often needed. Combination therapy with glucocorticoids and rituximab may be effective even in patients with IgG4-RD and cardiac mass, which may avoid the need of invasive treatments, such as surgery.
PENGARUH PENGUNGKAPAN SUSTAINABILITY REPORT TERHADAP NILAI PERUSAHAAN DENGAN PROFITABILITAS SEBAGAI MODERASI (Studi pada Perusahaan High-Profile Go Public yang Mempublikasikan Sustainability Report pada Tahun 2009-2012)

Aktivitas dunia usaha masih sering dipandang hanya mengeksploitasi sumber daya dan berorientasi pada profit, belum memperhatikan aspek keberlanjutan . Namun seiring dengan semakin luasnya eksploitasi sumber daya baik alam maupun manusia, tuntutan akan aspek keberlanjutan semakin meningkat. Penelitian ini membahas mengenai pengungkapan sustainability report serta profitabilitas perusahaan high-profile go public pada tahun 2009-2012 dan dampaknya terhadap nilai perusahaan. Tujuan penelitian ini adalah untuk mengetahui pengaruh pengungkapan sustainability report terhadap nilai perusahaan dan untuk mengetahui pengaruh profitabilitas sebagai variabel moderasi dalam hubungan antara pengungkapan sustainability report dengan nilai perusahaan. Sampel penelitian ini adalah perusahaan yang termasuk dalam kategori high-profile yang terdaftar di Bursa Efek Indonesia (BEI) pada tahun 2009-2012. Terdapat delapan perusahaan dengan 32 observasi yang memenuhi kriteria sebagai sampel penelitian. Metode analisis dalam penelitian ini menggunakan analisis regresi sederhana untuk mengetahui pengaruh pengungkapan sustainability report terhadap nilai perusahaan dan menggunakan uji residual untuk mengetahui pengaruh profitabilitas sebagai variabel moderasi antara pengungkapan sustainability report dengan nilai perusahaan. Hasil penelitian ini menunjukkan bahwa pengungkapan sustainability report tidak mempengaruhi terhadap nilai perusahaan. Selain itu, hasil penelitian ini juga menunjukkan bahwa profitabilitas tidak memoderasi hubungan antara pengungkapan sustainability report dengan nilai perusahaan. K ata Kunci: Pengungkapan Sustainability Report , Profitabilitas, Nilai Perusahaan, High- Profile
Optical Properties of ZnO Nanoparticles Synthesised from a Polysaccharide and ZnCl2

In this article we study the optical properties of ZnO nanoparticles. This paper describes cost effective, high yield, and a facile synthetic method for the synthesis of ZnO nanoparticles from precursors viz. linear polysaccharide, chitosan, and ZnCl2 by a precipitation method. The synthesized ZnO nanoparticles were characterized by surface area, pore size, and UV-visible measurements. The optical band gap and the Urbach energy were also calculated and the optical band gap energy of the synthesized ZnO nanoparticles was found to be 3.26 eV and the nature of the optical transition has been identified as direct allowed.
Event-related potential (ERP) evidence for early visual processing differences in children and adults with Cystinosis (CTNS gene mutations)

Background Cystinosis, a rare lysosomal storage disease caused by mutations in the CTNS gene, is characterized by cystine crystallization and accumulation within multiple tissues, including kidney and brain. Its impact on neural function appears mild relative to its effects on other organs during early disease, but since therapeutic advances have led to substantially increased life expectancy, neurological implications are of increasing interest, necessitating deeper understanding of the impact of cystinosis on neurocognitive function. Behavioral difficulties have been reported in cystinosis in the visual domain. Very little is known, however, about how the brains of people living with cystinosis process visual information. This is especially interesting given that cystine accumulation in the cornea and posterior ocular structures is a hallmark of cystinosis. Methods Here, high-density scalp electrophysiology was recorded to visual stimuli (during a Go/No-Go task) to investigate early visual processing in individuals with cystinosis, compared to age-matched controls. Analyses focused on early stages of cortical visual processing. Results The groups differed in their initial cortical response, with individuals with cystinosis exhibiting a significantly larger visual evoked potential (VEP) in the 130–150 ms time window. The groups also differed in the associations between neural responses and verbal abilities: While controls with higher IQ scores presented larger neural responses, that relationship was not observed in cystinosis. Conclusions The enlarged VEP in cystinosis could be the result of cortical hyperexcitability and/or differences in attentional engagement and explain, at least partially, the visual and visual-spatial difficulties described in this population.
Identification of immunogenic cell death-related subtypes used for predicting survival and immunotherapy of endometrial carcinoma through a bioinformatics analysis

Immunogenic cell death (ICD) is a unique phenomenon that can trigger comprehensive, adaptive immune responses through damage-associated molecular patterns, offering a promising avenue for tumor immunotherapy. However, the role of ICD-related genes and their correlation with endometrial carcinoma (EC), the most prevalent gynecologic malignancy, remains unclear. This study examined genetic, transcriptional, and clinical data of EC obtained from the Cancer Genome Atlas database. Unsupervised clustering analysis was utilized to identify distinct ICD clusters based on the expression of ICD-related genes. Regarding the different clusters, their survival analysis, assessment of the immune microenvironment, immune cell infiltration, immune checkpoint analysis, and tumor mutation burden analysis were performed. Furthermore, an ICD risk signature was established using univariate Cox regression and least absolute shrinkage and selection operator analysis. The Chi-square test was employed to investigate the relationship between the ICD score and clinical features. Multiple computational analytical tools were used to assess immune annotation, somatic mutations, tumor mutation burden, and response to immunotherapy and chemotherapy drugs in different ICD score groups. Two ICD clusters were identified, indicating that the ICD-high cluster was associated with improved prognosis, abundant immune cell infiltration, and enrichment of pathways related to immunologic activation. Moreover, the ICD risk signature showed predictive value for the immune microenvironment, immunotherapy response, chemotherapy susceptibility, and prognosis in EC. Our findings offer novel insights into personalized treatment strategies for EC patients.
The diagnostic and prognostic value of neutrophil-to-lymphocyte ratio and platelet-to-lymphocyte ratio on gastric cancer patients

Gastric cancer (GC) is the remaining concern of cancer-associated health burden. Valuable predictive and prognostic indicators support the early diagnosis and improve outcome. Immune escape and inflammation are important cancer hallmarks. The prognostic and diagnostic value of platelet-to-lymphocyte ratio (PLR) and neutrophil-to-lymphocyte ratio (NLR) was reported in some cancers. But these cheap and convenient indexes are far from clinical use. Thus, investigation the alteration of those index on GC is needed to impose the use of those indexes in clinic. The study recruited seventy-seven hospitalized patients newly diagnosed with GC and 90 healthy individuals. The clinical and preclinical data of participants were collected from Hospital Information Management system. This study were approved by the Ethical Committee, Vietnam Military Medical University. The data were analyzed on STATA version 14.0 and GraphPad Prism 8.0. The alteration of immunological system was reported by significantly higher white blood cell count, neutrophils, platelets, PLR, and NLR as well as decreased lymphocytes on GC, compared to healthy individuals. Those indexes were elevated on advanced stage GC, compared to early stage GC. Our receiver operating characteristic curve analysis showed the significant specificity and sensitivity of PLR (cutoff 135.0) and NLR (cutoff 2.0) on GC diagnosis with respective area under receiver operating characteristic curve of 84.74% and 85.17%, P < . 0001. Besides, our results reported the tendency of increased PLR and NLR and short time from clinical signs to being diagnosed. PLR and NLR have significant specificity and sensitivity in diagnosis and prognosis of GC.
Effects of occupational therapy on quality of life in breast cancer patients: A systematic review and meta-analysis

Background: The objective was to discuss the impact of occupational therapy on different domains of quality of life in breast cancer patients. We performed a literature search to identify articles published before June 27, 2023, using the following databases: PubMed, Embase, Web of Science, Cochrane Library, and Scopus. Objective: The objective was to discuss the impact of occupational therapy on different domains of quality of life in breast cancer patients. Data sources: We performed a literature search to identify articles published before June 27, 2023, using the following databases: PubMed, Embase, Web of Science, Cochrane Library, and Scopus. Methods: This study was reported following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses statement. Randomized controlled trials that reported the effects of occupational therapy on quality of life in breast cancer patients were identified. Two reviewers independently assessed eligibility, extracted data, and determined risks of bias. Pooled standardized mean differences (SMDs) with 95% confidence intervals (CIs) were estimated using random-effects meta-analyses. Galbraith plots, meta-regression analysis, subgroup analysis, and sensitivity analysis were used to identify heterogeneity in treatment effects. Results: Eight studies were included, with a total of 543 patients. The experimental group exhibited better global health (pooled SMD = 0.640, 95% CI = 0.251–1.028, P = .001), physical health (pooled SMD = 0.640, 95% CI = 0.251–1.028, P = .019), social health (pooled SMD = 0.251, 95% CI = 0.011–0.490, P = .040), and cognitive function (pooled SMD = 0.863, 95% CI = 0.266–1.460, P = .05) and improve fatigue (pooled SMD = −0.389, 95% CI = −0.586 to −0.192, P = .000), and role function (pooled SMD = 0.287, 95% CI = 0.029–0.546, P = .029) than the control group. The 2 groups exhibited comparable emotional health (pooled SMD = 0.243, 95% CI = −0.051 to 0.536, P = .105) and pain (pooled SMD = −0.312, 95% CI = −0.660 to 0.036, P = .079). Conclusion: The current evidence shows that occupational therapy can improve the quality of life of breast cancer patients, especially their global health, physical health, social health, cognitive function, fatigue, and role function.
Time and frequency dependent mechanical properties of LaCoO3-based perovskites: Internal friction and negative creep

The internal friction and creep deformation behavior of La0.8Ca0. 2CoO3 and pure LaCoO3 mixed ionic electronic conducting perovskite ceramics have been studied by Dynamic Mechanical Analysis and uniaxial compression under constant applied load, respectively. It was found that both the internal friction and creep strain were almost an order of magnitude higher for Ca2+ doped LaCoO3 as compared to pure undoped LaCoO3. The difference in Ca2+ doped LaCoO3 behavior was attributed to the much higher concentration of point defects (e.g., oxygen vacancies) in the structure and their interaction with other mobile defects, such as ferroelastic domain/twin walls, stacking faults, dislocations, etc. Such interactions of numerous point defects with domain walls produce energetic barriers and slow down the movement of ferroelastic domain walls under applied stress. At the same time, the defects' interactions increase the internal friction resulting in a much higher creep strain of La0.8Ca0. 2CoO3 as compared to pure LaCoO3, as the creep strain is determined by the distance between the domain wall and its equilibrium position at the onset of the creep process. Therefore, the high friction will result in the larger distance the wall has to move to reach the equilibrium which in turn results in higher creep strain. The expansion of LaCoO3 under constant applied compressive stress, named here as negative creep, was also discovered to occur during room temperature creep experiments.The internal friction and creep deformation behavior of La0.8Ca0. 2CoO3 and pure LaCoO3 mixed ionic electronic conducting perovskite ceramics have been studied by Dynamic Mechanical Analysis and uniaxial compression under constant applied load, respectively. It was found that both the internal friction and creep strain were almost an order of magnitude higher for Ca2+ doped LaCoO3 as compared to pure undoped LaCoO3. The difference in Ca2+ doped LaCoO3 behavior was attributed to the much higher concentration of point defects (e.g., oxygen vacancies) in the structure and their interaction with other mobile defects, such as ferroelastic domain/twin walls, stacking faults, dislocations, etc. Such interactions of numerous point defects with domain walls produce energetic barriers and slow down the movement of ferroelastic domain walls under applied stress. At the same time, the defects' interactions increase the internal friction resulting in a much higher creep strain of La0.8Ca0. 2CoO3 as compared to pure LaCo.
Supporting the wellbeing of caregivers of children on the autism spectrum: A qualitative report on experiences of attending group dance movement psychotherapy

Caregivers of children on the autism spectrum can carry a significant amount of practical, psychological, and social demands and responsibilities that are highly stressful. A group Dance Movement Psychotherapy (DMP) was offered to facilitate the wellbeing of caregivers. In this article, we explore the experiences of the therapeutic processes and outcomes of the intervention from the perspectives of caregivers, the therapist, and the researcher/co-facilitator. Method: Four clusters of caregivers of children on the autism spectrum (N = 20 Mean age = 39.25 years) took part in five group DMP sessions lasting 90 minutes delivered across two special educational needs settings. Twenty reflective focus groups took place in total, with each taking place at the end of each DMP session. Participants were invited to capture their experiences through arts-based drawings, while therapist and participating researcher/co-facilitator kept session-based notes and arts-based reflections. These arts-based and verbal data were grouped to generate themes. Results: Six overarching themes emerged from the arts-based and verbal data with multiple subthemes that describe the contribution of DMP towards promoting caregivers’ wellbeing and identified key challenges in implementing the intervention. These themes are: (1) Beholding within and around; (2) Reflecting and reinforcing strengths; (3) Exchanging views; (4) Looking back and carrying forward; (5) Core benefits; and (6) Challenges to engage in DMP. Conclusion: Caregivers talked about their experience of participating in the DMP groups as positive and acknowledged the helpful and challenging aspects of taking part in DMP intervention. They appreciated the creative and expressive nature of the intervention to promote their emotional and social wellbeing. The challenges identified in the study indicate that further awareness is needed within school environments about the contribution arts therapies can make towards establishing appropriate and sustainable interventions for caregivers.