Miracle-dz/UniFAR-FTUs huggingface dataset:
Homeobox A5 and A9 expression and beta-thalassemia

ABSTRACT Background and aim: The pathogenesis of β-thalassemia has been attributed to ineffective erythropoiesis. The function of Hox genes in normal haematopoiesis has been widely studied using gene expression analysis. The aim of this study is to evaluate the expression of HoxA9, and HoxA5 genes in beta-thalassemia. Materials and methods: Children with thalassemia major, thalassemia intermediate, and age and sex-matched healthy controls (n = 50/group) were enrolled. Detection of HoxA5 and HoxA9 mRNA expression was performed by real-time polymerase chain reaction (RT-PCR). Results: Expression of HoxA9 increased in a direct linear trend (median 0.5 in controls, 2.4 in intermediate disease, 4.1 in major disease, p = 0.001) and generally correlated with the red cell count, haematocrit, ferritin and levels of beta-globin. In those with thalassemia major, the relative change of HoxA9 was linked to transfusion history, the white blood cell count, ferritin, and beta-globin (all r > 0.5, p < 0.001). Levels of HoxA9 were superior to HoxA5 in differentiating controls from thalassemia intermedia, whilst both differentiated major from the intermediate disease. Conclusion: This study highlights the importance of HoxA genes in early identification of patients, at high risk of developing complications, as it allows specific measures to delay the progression of the disease. HoxA gene expression is a promising diagnostic and prognostic marker in patients with β-thalassemia.
Ventromedial Prefrontal Cortex Drives the Prioritization of Self-Associated Stimuli in Working Memory

Humans show a pervasive bias for processing self- over other-related information, including in working memory (WM), where people prioritize the maintenance of self- (over other-) associated cues. To elucidate the neural mechanisms underlying this self-bias, we paired a self- versus other-associated spatial WM task with fMRI and transcranial direct current stimulation (tDCS) of human participants of both sexes. Maintaining self- (over other-) associated cues resulted in enhanced activity in classic WM regions (frontoparietal cortex), and in superior multivoxel pattern decoding of the cue locations from visual cortex. Moreover, ventromedial PFC (VMPFC) displayed enhanced functional connectivity with WM regions during maintenance of self-associated cues, which predicted individuals' behavioral self-prioritization effects. In a follow-up tDCS experiment, we targeted VMPFC with excitatory (anodal), inhibitory (cathodal), or sham tDCS. Cathodal tDCS eliminated the self-prioritization effect. These findings provide strong converging evidence for a causal role of VMPFC in driving self-prioritization effects in WM and provide a unique window into the interaction between social, self-referential processing and high-level cognitive control processes. SIGNIFICANCE STATEMENT People have a strong tendency to attend to self-related stimuli, such as their names. This self-bias extends to the automatic prioritization of arbitrarily self-associated stimuli held in working memory. Since working memory is central to high-level cognition, this bias could influence how we make decisions. It is therefore important to understand the underlying brain mechanisms. Here, we used neuroimaging and noninvasive neurostimulation techniques to show that the source of self-bias in working memory is the ventromedial PFC, which modulates activity in frontoparietal brain regions to produce prioritized representations of self-associated stimuli in sensory cortex. This work thus reveals a brain circuit underlying the socially motivated (self-referential) biasing of high-level cognitive processing.
Modelling of post-diapause development and spring emergence of Cydia nigricana (Lepidoptera: Tortricidae)

Abstract The prediction of the post-diapause emergence is the first step towards a comprehensive decision support system that can contribute to a considerable reduction of pesticide use by forecasting a precise spraying date. The cumulative field emergence can be described as a function of the cumulative development rate. We investigated the impact of seven constant temperatures and five light regimes on post-diapause development in laboratory experiments. Development rate depended significantly on temperature but not on photoperiod. We therefore fit non-linear thermal performance curves, a better and more modern approach over past linear models, to describe the development rate as a function of temperature. The four parameter Brière function was the most suitable and was subsequently applied to temperature data from 36 previous pea fields, where pea moth emergence was measured with pheromone traps in Northern Hesse (Germany). In order to describe the variation in development times between individuals, we fit five nonlinear distribution models to the cumulative development rate as a function of cumulative field emergence. The three parameter Gompertz model was selected as the best fitted model. We validated the model performance with an independent field data set. The model correctly predicted the first moth in the trap and the peak emergence in 81.82% of cases, with an average deviation of only 2.00 and 2.09 days respectively.
Telomere length is heritable and genetically correlated with lifespan in a wild bird

Telomeres are protective caps at the end of eukaryotic chromosomes that shorten with age and in response to stressful or resource‐demanding conditions. Their length predicts individual health and lifespan across a wide range of animals, but whether the observed positive association between telomere length and lifespan is environmentally induced, or set at conception due to a shared genetic basis, has not been tested in wild animals. We applied quantitative genetic “animal models” to longitudinal telomere measurements collected over a 10‐year period from individuals of a wild seabird (common tern; Sterna hirundo) with known pedigree. We found no variation in telomere shortening with age among individuals at the phenotypic and genetic level, and only a small permanent environmental effect on adult telomere length. Instead, we found telomere length to be highly heritable and strongly positively genetically correlated with lifespan. Such heritable differences between individuals that are set at conception may present a hitherto underappreciated component of variation in somatic state.
Bone cement with screw augmentation technique for the management of moderate tibial bone defects in primary knee arthroplasty patients with high body mass index

Objectives This study aims to investigate whether variables such as body mass index (BMI), size of the cement with screw augmentation area (CSA), distance between the base of tibial plate and the deepest point of the defect area (DPDA) may cause any mechanical problems leading to deterioration in tibiofemoral alignment or impact clinical outcomes when the surgeon utilizes bone cement with screw augmentation (BCSA) technique in the treatment of moderate non-contained tibial bone defects in total knee arthroplasty (TKA). Patients and methods This cross-sectional study, conducted between March 2018 and March 2019, included 37 knees of 28 patients (4 males, 24 females; mean age 71.3±8.9; range, 55 to 86 years) with moderate tibial bone defects requiring treatment with BCSA during primary TKA. Patients with BMI >30 were scored with Hospital for Special Surgery (HSS) score for clinical outcomes; besides, CSA, DPDA, and tibiofemoral alignment were calculated on plain X-rays. Results Mean BMI was 34.1±5.7 (range, 24.9 to 45.9). Patients had a mean follow-up period of 44±13.9 (range, 28 to 75) months. Mean postoperative CSA was 98.2±35.3 (range, 42 to 180) mm2 and DPDA was 7.4±2.6 (range, 3.5 to 12.9) mm. Mean HSS score at last follow-up was 88.0±7.5 (range, 71 to 97). Conclusion Bone cement with screw augmentation technique was associated with satisfactory clinical outcomes and tibiofemoral alignment was not significantly deviated in patients with high BMI. We determined that neither the depth of DPDA nor the size of CSA had any correlation with clinical outcomes.
Travel time, availability of emergency obstetric care, and perceived quality of care associated with maternal healthcare utilisation in Afghanistan: A multilevel analysis

ABSTRACT Limited understanding of factors such as travel time, availability of emergency obstetric care (EmOC), and satisfaction/perceived quality of care on the utilisation of maternal health services exists in fragile and conflict-affect settings. We examined these key factors on three utilisation outcomes: at least one skilled antenatal care (ANC) visit, in-facility delivery, and bypassing the nearest public facility for childbirth in Afghanistan from 2010 to 2015. We used three-level multilevel mixed effects logistic regression models to assess the relationships between women’s and their nearest public facilities’ characteristics and outcomes. The nearest facility score for satisfaction/perceived quality was associated with having at least one skilled ANC visit (AOR: 2.02, 95% CI: 1.21, 3.36). Women whose nearest facility provided EmOC had a higher odds of in-facility childbirth compared to women whose nearest facility did not (AOR: 1.24, 95% CI: 1.04, 1.48). Nearest hospital travel time (AOR: 0.95, 95% CI: 0.93, 0.98) and nearest facility satisfaction/perceived quality (AOR: 0.34, 95% CI: 0.14, 0.82) were associated with lower odds of women bypassing their nearest facility. Afghanistan has made progress in expanding access to maternal healthcare services during the ongoing conflict. Addressing key barriers is essential to ensure that women have access to life-saving services.
Review of the use of nasal and oral antiseptics during a global pandemic

A review of nasal sprays and gargles with antiviral properties suggests that a number of commonly used antiseptics including povidone-iodine, Listerine®, iota-carrageenan and chlorhexidine should be studied in clinical trials to mitigate both the progression and transmission of SARS-CoV-2. Several of these antiseptics have demonstrated the ability to cut the viral load of SARS-CoV-2 by 3–4 log10 in 15–30 s in vitro. In addition, hypertonic saline targets viral replication by increasing hypochlorous acid inside the cell. A number of clinical trials are in process to study these interventions both for prevention of transmission, prophylaxis after exposure, and to diminish progression by reduction of viral load in the early stages of infection.
Up-regulation of miR-204 inhibits proliferation, invasion and apoptosis of gallbladder cancer cells by targeting Notch2

Gallbladder carcinoma (GC) is an extremely malignant gastrointestinal tumor, but relevant mechanisms are still under investigation. MicroRNA (miR) is differentially expressed in a variety of tumors. Here we explored miR-204 in patients with GC and related mechanisms. A GSE104165 chip was downloaded from the gene expression omnibus (GEO) for analysis. The qRT-PCR assay was used for quantifying miR-204 and Notch2 in the serum and tissues of the patients, and the patients were followed up for 3 years to analyze independent factors of prognosis. The CCK8, transwell, and flow cytometry assays were applied for analyzing proliferation, invasion, as well as apoptosis of cells, and the dual luciferase reporter (DLR) assay was adopted for determining the association of miR-204 with Notch2. MiR-204 was low in patients with GC, and it might serve as a diagnostic indicator for GC. In addition, patients with low e MiR-204 usually faced high rates of III+IV stage, distant metastasis, and low differentiation, and also showed a poor prognosis. DLR assay verified the targeted binding of miR-204 to Notch2 mRNA.
Uniform Flow in Bubble Columns

Uniform bubbly flow in a 15 cm bubble column is investigated. We use a special needle sparger consisting of 559 separate needles, uniformly distributed over the bottom. With this sparger, we can ensure that all bubbles generated are of the same size and that the bubble injection is very uniform over the entire bottom of the column. Detailed experiments are reported, using optical glass fibers to measure the local gas fraction and bubble size and velocity and using laser Doppler anemometry to measure the liquid axial velocity field. We find that the homogeneous flow regime extends up to a gas fraction of 55% well beyond the predictions of theory. The superficial gas velocity at which the homogeneous regime looses its stability depends on the water quality: fresh water looses its stability much earlier than old water. However, the gas fraction as a function of the superficial gas velocity is in the homogeneous regime independent of the water quality. The overall gas fraction can be described by a Richardson.
Non-methane volatile organic compound flux from a subarctic mire in Northern Sweden

Biogenic NMVOCs are mainly formed by plants and microorganisms. They have strong impact on the local atmospheric chemistry when emitted to the atmosphere. The objective of this study was to determine if there are significant emissions of non-methane volatile organic compounds (NMVOCs) from a subarctic mire in northern Sweden. Subarctic peatlands in discontinuous permafrost regions are undergoing substantial environmental changes due to their high sensitivity to climate warming and there is need for includingNMVOCs in the overall carbon budget. Automatic and manual chamber measurements were used to estimateNMVOCfluxes from three dominating subhabitats on the mire during three growing seasons. Emission rates varied and were related to plant species distribution and seasonal net ecosystem exchange of carbon dioxide. The highest fluxes were observed from wetter sites dominated by Eriophorum and Sphagnum spp. Total NMVOC emissions from the mire (∼17 ha) is estimated to consist of ∼150 kgC during a growing season with 150 d. NMVOC fluxes can account for ∼5% of total net carbon exchange (−3177 kgC) at the mire during the same period. NMVOC emissions are therefore a significant component in a local carbon budget for peatlands
Management and retrospective analysis of tumors and tumor-like lesions localized in the talus

Objectives This study aims to investigate the characterization and follow-up results of tumors and tumor-like lesions in the talus. Patients and methods Twenty-one patients (15 males, 6 females; mean age: 31.6±17 years; range, 4 to 67 years) with benign and malignant tumors or tumor-like lesions in the talus region treated and followed in our clinic between January 2007 and January 2019 were evaluated retrospectively. Radiological, pathological, surgical, and demographic features were scanned from the database. Results Patients were followed for mean 80±45.1 (range, 25 to 156) months. The most common complaint was pain and antalgic gait. Benign bone tumors were found in 15 (71%) of 21 patients, while tumor-like lesions (two intraosseous ganglia, osteomyelitis, and bone infarction) were found in four patients. The remaining two were patients with lung and bladder cancer metastasis. Lesion size was mean 2.1±0.5 (range, 1.1 to 3.3) cm. Recurrence developed in 14.3% (n=3) of the patients during follow-up. Conclusion The talus is a rare location for tumors; however, benign and malignant tumors and tumor-like lesions may be localized in the talus.
Mineral contents of soybean seed coats and embryos during development

Abstract Little is known about mineral metabolism in legume seeds during development and maturation. This study examines the distribution of Mg, Ca, Cu, Fe, Zn and Mn between seed coat and embryo in five soybean (Glycine max [L.] Merr.) cultivars during seed development. Levels of Mg and Fe in seed coat and embryo varied with reproductive growth stage, but in no consistent manner across the various cultivars. Seed coat Ca and Zn levels initially decreased, then rose in the final stages, while embryonic levels decreased or remained constant. Cu and Mn contents of seed coats initially increased, then dropped — accompanied by an increase of these minerals in the embryo. These findings suggest that cationic metals are not passively assimilated in conjunction with dry matter accumulation, but rather are subject to ion‐specific seed coat unloading, transport, and cotyledonary uptake processes.
Cyclopentadienyl–metal bond cleavage and stereospecific bromination. The structure of (η-C5H5)2Ti(OOCPh)2 and its reactions with bromine

The 13C and 1H nmr spectra as well as the X-ray structure determination for (η-C5H5)2Ti(OOCPh)2 are described. The compound crystallizes in space group P21212I with a = 7.5135, b = 12.5166, c = 21.1416 A, Z = 4, dcalcd = 1.40 g cm−3 (MoKα1, λ = 0.70932 A). The structure was solved with MULTAN using data collected at 115 K and refined to the final R = 0.059 for 1500 significant reflections. The molecule has two different carboxylate ligands, one of which has a Ti—O—C angle of 135.4(6)° and longer Ti—O (1.976(5) A) and O—C (1.300(10) A) bonds while the other has a Ti—O—C angle of 157.0(7)° with shorter Ti—O (1.913(6) A) and O—C (1.267(10) A) bonds. With bromine, ring cleavage occurs giving C5H5Br3 or C5H5Br5 in which bromination has occurred stereospecifically. The same reaction occurs with chlorine but not with iodine or iodine monochloride. Related reactions have been observed with (η-C5H5)2MCl2 (M = Ti, Zr, and V). A non-radical mechanism is proposed in which the LUMO and HOMO of Br2 interact simultaneou.
The paradigm of norgestimate: a third-generation testosterone-derivative progestin with a peripheral anti-androgenic activity and the lowest risk of venous thromboembolism

ABSTRACT Introduction Norgestimate (NGM) is a testosterone derivative with peculiar receptor activities. Areas covered This is a narrative review of the available data on the pharmacotherapy of NGM in combined hormonal contraceptives (CHCs) in terms of contraceptive efficacy, venous thromboembolism (VTE) risk, safety, tolerability and bleeding patterns. A comprehensive literature review was conducted in August 2020 using PubMed with the keyword ‘norgestimate’. Expert Opinion NGM shows a mild estrogenic activity associated with anti-mineralocorticoid and anti-androgenic properties, largely responsible for the cardiovascular safety profile. The anti-androgenic property depends on the androgen receptor (AR) nuclear translocation (AR trafficking and its subnuclear distribution), the inhibition of 5α-reductase activity (it possesses higher activity compared to other available progestins), and the increase on sexual hormone binding globulin (SHBG) levels if combined with an estrogenic counterpart. NGM is one of the molecules that best modulates the power of ethinyl-estradiol on the thromboembolic risk, being associated with the lowest VTE risk between different CHCs. NGM has the advantage of retaining peripheral anti-androgenic activity, demonstrated by the impact on lipid and glucose metabolism, and it should be preferred if compared with other similar progestins of the same class of risk which are much more androgenic, such as levonorgestrel.
Complete chloroplast genome sequencing and comparative analysis reveals changes to the chloroplast genome after allopolyploidization in Cucumis.

Allopolyploids undergo 'genomic shock' leading to large genetic and epigenetic modifications. Previous studies mainly focused on nuclear changes, while little is known about the inheritance and changes of organelle genome in allopolyploidization. The synthetic allotetraploid Cucumis ×hytivus, which is generated via hybridization between C. hystrix and C. sativus, is a useful model system to study cytonuclear variation. Here, we report the chloroplast genome of allotetraploid C. ×hytivus and its diploid parents via sequencing and comparative analysis. The obtained chloroplast genomes ranged in length from 154,673 to 155,760 bp, and their gene contents, gene orders, and GC contents were similar to each other. Comparative genome analysis support chloroplast maternally inheritance. However, we identified 51 Indels and 292 SNPs genetic variation of chloroplast genome in allopolyploid C. ×hytivus relative to its female parent C. hystrix. Nine intergenic regions with rich variation were identified through comparative chloroplast genome analysis in the Cucumis subgenus. The phylogenetic network based on the chloroplast genome sequences clarified the evolution and taxonomic position of the synthetic allotetraploid C. ×hytivus. The results of this study provide us with an insight into the changes of organelle genome after allopolyploidization, and a new understanding of the cytonuclear evolution.
Host susceptibility factors render ripe tomato fruit vulnerable to fungal disease despite active immune responses

Abstract The increased susceptibility of ripe fruit to fungal pathogens poses a substantial threat to crop production and marketability. Here, we coupled transcriptomic analyses with mutant studies to uncover critical processes associated with defense and susceptibility in tomato (Solanum lycopersicum) fruit. Using unripe and ripe fruit inoculated with three fungal pathogens, we identified common pathogen responses reliant on chitinases, WRKY transcription factors, and reactive oxygen species detoxification. We established that the magnitude and diversity of defense responses do not significantly impact the interaction outcome, as susceptible ripe fruit mounted a strong immune response to pathogen infection. Then, to distinguish features of ripening that may be responsible for susceptibility, we utilized non-ripening tomato mutants that displayed different susceptibility patterns to fungal infection. Based on transcriptional and hormone profiling, susceptible tomato genotypes had losses in the maintenance of cellular redox homeostasis, while jasmonic acid accumulation and signaling coincided with defense activation in resistant fruit. We identified and validated a susceptibility factor, pectate lyase (PL). CRISPR-based knockouts of PL, but not polygalacturonase (PG2a), reduced susceptibility of ripe fruit by >50%. This study suggests that targeting specific genes that promote susceptibility is a viable strategy to improve the resistance of tomato fruit against fungal disease.
Using the modified Ponseti method to treat complex clubfoot: Early results

Objectives This study aims to present the results of complex clubfoot patients treated with modified Ponseti method and put forth the warning clinical signs of complex deformities. Patients and methods A total of 11 patients (10 males, 1 female; mean age 60.1±49.7; range, 2 to 180 days) with 16 complex clubfeet treated with modified Ponseti method were included in this study conducted between January 2016 and June 2019. All the data of the patients were collected prospectively and reviewed retrospectively. Demographic features, clubfoot severity, number of casts, position of each foot before cast removal, ankle dorsiflexion (DF), complications, and additional procedures were noted at all clinical visits. Results Eleven (11.2%) of 98 patients had complex clubfoot deformity. Six (7.7%) of 78 newly diagnosed patients and five (25%) of 20 referred patients had complex clubfeet. We treated 16 complex clubfeet of 11 patients. The mean follow-up period was 13.3 (range, 10 to 16) months. All deformities were initially corrected using a mean of seven (range, 5 to 8) casts and Achilles tenotomy. Relapses occurred in three (18.75%) patients, but all recovered after recasting. The creases above the heels disappeared in all of the patients, whereas plantar creases persisted on two (12.5%) feet. Pirani scores and DF improved statistically significantly after treatment, and DF improved significantly between tenotomy and the final visit. Conclusion The modified Ponseti method is an effective treatment for complex clubfoot. Classical clinical appearance, treatment-resistant deformities and referred patients should be warning signs for complex clubfoot.