Miracle-dz/UniFAR-FTUs huggingface dataset:
Cameras as clocks

Abstract Consumer-grade digital cameras have become ubiquitous accessories of science. Particularly in glaciology, the recognized importance of short-term variability has motivated their deployment for increasingly time-critical observations. However, such devices were never intended for precise timekeeping, and their use as such needs to be accompanied by appropriate management of systematic, rounding and random errors in reported image times. This study describes clock drift, subsecond reporting resolution and timestamp precision as the major obstacles to precise camera timekeeping, and documents the subsecond capability of camera models from 17 leading manufacturers. We present a complete and accessible methodology to calibrate cameras for absolute timing and provide a suite of supporting scripts. Two glaciological case studies serve to illustrate how the methods relate to contemporary investigations: (1) georeferencing aerial photogrammetric surveys with camera positions time-interpolated from GPS tracklogs; and (2) coupling videos of glacier-calving events to synchronous seismic waveforms.
Dissecting the Role of Autophagy-Related Proteins in Cancer Metabolism and Plasticity

Modulation of autophagy as an anticancer strategy has been widely studied and evaluated in several cell models. However, little attention has been paid to the metabolic changes that occur in a cancer cell when autophagy is inhibited or induced. In this review, we describe how the expression and regulation of various autophagy-related (ATGs) genes and proteins are associated with cancer progression and cancer plasticity. We present a comprehensive review of how deregulation of ATGs affects cancer cell metabolism, where inhibition of autophagy is mainly reflected in the enhancement of the Warburg effect. The importance of metabolic changes, which largely depend on the cancer type and form part of a cancer cell’s escape strategy after autophagy modulation, is emphasized. Consequently, pharmacological strategies based on a dual inhibition of metabolic and autophagy pathways emerged and are reviewed critically here.
Machine Learning Approaches for Segmentation of Cardiovascular Neurocristopathy Related Images

Cardiovascular neurocristopathy is associated with abnormal migration and development of neural crest cells, impacting the neural and the human cardiovascular system and leading to diseases such as cardiomyopathy, aortic disease, and aortic valve dysfunction. With advancements in biomedical imaging tools, efforts are made to understand the underlying causes of cardiovascular neurocristopathy and develop new diagnostic methods, especially using machine learning or specifically its sub-branch deep learning models. This article provides a systematic survey of the literature related to machine/deep learning-based segmentation of the diseases mentioned above in computer tomography (CT), magnetic resonance imaging (MRI), X-rays, and echocardiogram (Echos) images. The review identified gaps and provides future directions, such as the need for better interpretable and explainable AI models, addressing the lack of publicly available datasets, standardizing the result reporting procedure for better repeatability of the result, and the development of standard performance measurement metrics. The general conclusion suggests that there is a need for multimodalities, multimodel, high-quality data sets, and open-source disease-specific dataspaces that will help develop trustworthy deep learning models that could be implemented in imaging devices/tools and provide medical-grade segmented outputs that will augment and speed up clinician decision making.
Standardization of Semanggi (Marsilea crenata C. Presl.) Leaves from Benowo District, Surabaya for Standardized Herbal Raw Material

Semanggi (Marsilea crenata C. Presl.) is a unique plant that grows in East Java, Indonesia. Its leaves are widely used as ingredients for traditional food. Semanggi leaves contain phytoestrogen compounds that can be used for their antineuroinflammatory, antiosteoporosis, and antioxidant properties. This effect is believed to be caused by kaempferol as an active marker. This study aims to determine the specific and non-specific parameters of semanggi leaves from Benowo District of Surabaya. The standardization results for specific parameters revealed the macroscopic characteristics of the leaves in radius ± 2 cm, pale green to yellowish-green color, smooth surface, obdeltoid shape, and four leaves. The microscopic features are stomata on the epidermis, crystal sand calcium oxalate, bone leaves with vascular bundle, and no space between the epidermis. The organoleptic characteristics are yellowish-green color, tasteless, astringent smell. The physicochemical of water-soluble content result was 7.4566 ± 0.1173% and soluble ethanol was 7.7466 ± 0.4083%. The phytochemical positive test results for the identification of alkaloids, flavonoids, and terpenoids. Based on UHPLC-HRMS analysis, semanggi leaves contain 0,41% kaempferol with a retention time of 6.88 ± 0.2 minute. The results for non-specific parameters indicated that the content of total ash, acid-insoluble ash, moisture, and drying shrinkage content was 0.8136 ± 0.0171%; 7.9700 ± 0.1044%; 6.2547 ± 0.2864%; and 9.0936 ± 0.1305% respectively. The results indicate that the semanggi leaves sample have been assessed and found to meet the established standards.
COOL-SEASON TURFGRASS RESPONSE TO BIOSOLID FERTILIZATION IN THE

by Jeff Alan Rutan, M.S. Washington State University December 2009 Chair: Eric D. Miltner Turfgrass response to nitrogen (N) can be affected by N source and season of application. Field and laboratory studies were conducted at Puyallup, WA to compare turfgrass response measured by N recovery, visual color and quality, and N release of turfgrass fertilizers. Nitrogen sources were applied to a fine-fescue (Festuca rubra L.) / colonial bentgrass (Agrostis capillaris L.) mixture grown on a sand cap maintained under golf course fairway conditions and perennial ryegrass (Lolium perenne L.) grown on a Puyallup fine sandy loam soil maintained under home lawn conditions. In the field, month of application and N source were found to affect turfgrass response. Efficiency of ammonium sulfate (AmS), polymer-coated sulfur-coated urea (PCSCU), and biosolid N sources was increased when applications were made corresponding to plant growth cycles and periods of expected active microbiological activity. Effective late fall N use from biosolid fertilization of perennial ryegrass was noted. Limited availability of complex N forms associated with biosolid N sources produced overall less turfgrass response. However, similar turfgrass response to N sources was noted when higher biosolid N rates were applied to perennial ryegrass turf. Generally N recovery and visual quality were highest 4 wk after N source application.
Borrowing size in networks of cities: City size, network connectivity and metropolitan functions in Europe

The current dynamics in the Western European urban system are in marked contrast with the bourgeoning literature stressing the importance of agglomeration for economic growth. This paper explores whether this is due to the rise of ‘city network economies’, leading to processes of borrowed size as well as the rise of agglomeration shadows in networks of cities. The spread of metropolitan functions over Western European cities is analysed. It is found that network connectivity positively enhances the presence of metropolitan functions, but local size remains the most significant determinant for most types of functions. The importance of size and network connectivity differs across metropolitan functions and across cities.
The Evolution of Diagnostic Techniques in the Paleopathology of Tuberculosis: A Scoping Review

Tuberculosis (TB) is an ancient chronic infectious disease that remains a global health concern. In human remains, the most common and characteristic clinical signs are the skeletal modifications involving the spine, such as in Pott's disease. Diagnosing TB in ancient human remains is challenging. Therefore, in this systematic review, the authors investigated the studies assessing molecular diagnosis of Pott's disease in ancient human remains with the intention to survey the literature, map the evidence, and identify gaps and future perspectives on TB in paleopathology. Our systematic review offers a full contextualization of the history of Pott's disease in ancient times. Our search strategy was performed between August 2022 and March 2023. The authors initially identified 340 records, and 74 studies were finally included and assessed for qualitative analysis. Due to non-specific clinical signs associated with TB, how best to diagnose tuberculosis in human remains still represents a central point. Nevertheless, ancient DNA (aDNA) analysis, lipid biomarkers, and spoligotyping might be extremely useful tools in the study of TB in human remains. Moreover, we propose the extraction and study of immune response genes involved in innate and adaptive immunity versus Mycobacterium spp. as an innovative and vastly overlooked approach in TB paleopathology. Complementary methodologies should be integrated to provide the best approach to the study of TB in human remains.
A Relationship-Based Resilience Program for Promotores: Protocol for a Randomized Controlled Waitlist Trial

Background Community service providers (CSPs) play an integral role in the health care of low-income Hispanic or Latinx (HL) communities. CSPs have high-stress frontline jobs and share the high-risk demographics of their communities. Relational savoring (RS) has been associated with lower cardiovascular reactivity and psychosocial benefits, with particular promise among HL participants. In this study, we aim to identify RS’s potential in promoting CSPs’ cardiometabolic health and, in so doing, having broader impacts on the community they serve. Objective This randomized controlled waitlist study aims to examine the effect of an RS intervention on (1) CSPs’ cardiometabolic health (cardiometabolic risk factors and outcomes) and (2) CSPs’ threats to leaving the workforce. Methods We will recruit a sample of 80 CSPs from community health agencies serving low-income HL populations. Participating CSPs will be randomized into an experimental or a waitlist control. Participants will complete 1 or 2 baseline assessment batteries (before the intervention), depending on the assigned group, and then complete 2 more assessment batteries following the 4-week RS intervention (after the intervention and at a 3-mo follow-up). The RS intervention consists of guided reflections on positive moments of connection with others. Electrocardiogram data will be obtained from a wearable device (Polar Verity Sense or Movisens) to measure heart rate variability. The primary outcome is cardiometabolic health, consisting of cardiometabolic risk (obtained from heart rate variability) and cardiometabolic health behaviors. The secondary outcomes include CSPs’ threats to leaving the workforce (assessed via psychological well-being), intervention acceptability, and CSPs’ delivery of cardiometabolic health programming to the community (exploratory). Analyses of covariance will be used to examine the effects of RS on cardiometabolic health and on CSPs’ threats to leaving the workforce, comparing outcomes at baseline, postintervention, and at follow-up across participants in the experimental versus waitlist group. Results The study has been approved by the University of California, Irvine, Institutional Review Board and is currently in the data collection phase. By May 2023, 37 HL CSPs have been recruited: 34 have completed the baseline assessment, 28 have completed the 4 intervention sessions, 27 have completed the posttreatment assessment, and 10 have completed all assessments (including the 3-mo follow-up). Conclusions This study will provide valuable information on the potential of RS to support cardiometabolic health in HL CSPs and, indirectly, in the communities they serve. Trial Registration ClinicalTrials.gov NCT05560893; https://clinicaltrials.gov/study/NCT05560893 International Registered Report Identifier (IRRID) DERR1-10.2196/51427
Postbiotic Preparation of Lacticaseibacillus rhamnosus GG against Diarrhea and Oxidative Stress Induced by Spike Protein of SARS-CoV-2 in Human Enterocytes

The Spike protein of SARS-CoV-2 acts as an enterotoxin able to induce chloride secretion and production of reactive oxygen species (ROS), involved in diarrhea pathogenesis. L. rhamnosus GG (LGG) is recommended in pediatric acute gastroenteritis guidelines as a therapy independent of infectious etiology. We tested a postbiotic preparation of LGG (mLGG) in an in vitro model of COVID-associated diarrhea. Caco-2 cell monolayers mounted in Ussing chambers were exposed to Spike protein, and electrical parameters of secretory effect (Isc and TEER) were recorded in the Ussing chambers system. Oxidative stress was analyzed by measuring ROS production (DCFH-DA), GSH levels (DNTB), and lipid peroxidation (TBARS). Experiments were repeated after mLGG pretreatment of cells. The Isc increase induced by Spike was consistent with the secretory diarrhea pattern, which was dependent on oxidative stress defined by a 2-fold increase in ROS production and lipid peroxidation and variation in glutathione levels. mLGG pretreatment significantly reduced the secretory effect (p = 0.002) and oxidative stress, namely ROS (p < 0.001), lipid peroxidation (p < 0.001), and glutathione level changes (p < 0.001). LGG counteracts Spike-induced diarrhea by inhibiting the enterotoxic effect and oxidative stress. The LGG efficacy in the form of a postbiotic depends on metabolites secreted in the medium with antioxidant properties similar to NAC. Because SARS-CoV-2 is an enteric pathogen, the efficacy of LGG independent of etiology in the treatment of acute gastroenteritis is confirmed by our data.
Egg parasitoid complex of the pine processionary moth in NW Italy

ABSTRACT Investigations on the egg parasitoid complex of the pine processionary moth (PPM), Thaumetopoea pityocampa, were performed in 2020-2022 in seven sites located in NW Italy to determine the parasitoid species composition, seasonal emergence, parasitoid species incidence, and parasitism rate. Furthermore, we examined whether the egg batches parameters and the parasitism rate were influenced by altitude and summer temperatures. A sample of 832 egg batches was collected, each batch consisting on average of 206 ± 5.73 eggs. In total, 35,881 egg parasitoids emerged, mainly represented by four primary species, namely Ooencyrtus pityocampae, Baryscapus servadeii, Anastatus bifasciatus and Trichogramma sp. Parasitism ranged from 4.27% to 24.41% and the most representative species were O. pityocampae (68.38%) in 2020-2021, and Trichogramma sp. (56.50%) in 2021-2022. The altitude of the sites (808-1303 m a.s.l.) had a negative correlation with all the investigated egg batches parameters (e.g. batch length), and with the parasitism rate by A. bifasciatus and B. servadeii, while a positive correlation was found only for O. pityocampae. The number of days with temperatures above 30°C was positively correlated with parasitism rate for A. bifasciatus and O. pityocampae, and negatively for Trichogramma sp. , while no correlation was found with B. servadeii. Since the performance and distribution of the natural enemies is highly dependent on climatic conditions, the regulating effect of parasitoids, reducing PPM population needs to be further investigated, to compare the complex of natural enemies across a wider geographic and climatic range.
Mitochondrial Function in Healthy Human White Adipose Tissue: A Narrative Review

As ¾ of the global population either have excess or insufficient fat, it has become increasingly critical to understand the functions and dysfunctions of adipose tissue (AT). AT serves as a key organ in energy metabolism, and recently, attention has been focused on white AT, particularly its mitochondria, as the literature evidence links their functions to adiposity. This narrative review provides an overview of mitochondrial functionality in human white AT. Firstly, it is noteworthy that the two primary AT depots, subcutaneous AT (scAT) and visceral AT (vAT), exhibit differences in mitochondrial density and activity. Notably, vAT tends to have a higher mitochondrial activity compared to scAT. Subsequently, studies have unveiled a negative correlation between mitochondrial activity and body mass index (BMI), indicating that obesity is associated with a lower mitochondrial function. While the impact of exercise on AT mitochondria remains uncertain, dietary interventions have demonstrated varying effects on AT mitochondria. This variability holds promise for the modulation of AT mitochondrial activity. In summary, AT mitochondria exert a significant influence on health outcomes and can be influenced by factors such as obesity and dietary interventions. Understanding the mechanisms underlying these responses can offer potential insights into managing conditions related to AT and overall health.
Damaged road extracting with high-resolution aerial image of post-earthquake

With the rapid development of earth observation technology, remote sensing images have played more important roles, because the high resolution images can provide the original data for object recognition, disaster investigation, and so on. When a disastrous earthquake breaks out, a large number of roads could be damaged instantly. There are a lot of approaches about road extraction, such as region growing, gray threshold, and k-means clustering algorithm. We could not obtain the undamaged roads with these approaches, if the trees or their shadows along the roads are difficult to be distinguished from the damaged road. In the paper, a method is presented to extract the damaged road with high resolution aerial image of post-earthquake. Our job is to extract the damaged road and the undamaged with the aerial image. We utilized the mathematical morphology approach and the k-means clustering algorithm to extract the road. Our method was composed of four ingredients. Firstly, the mathematical morphology filter operators were employed to remove the interferences from the trees or their shadows. Secondly, the k-means algorithm was employed to derive the damaged segments. Thirdly, the mathematical morphology approach was used to extract the undamaged road; Finally, we could derive the damaged segments by overlaying the road networks of pre-earthquake. Our results showed that the earthquake, broken in Yaan, was disastrous for the road, Therefore, we could take more measures to keep it clear.
Striving to revive pulses in India with extension, input subsidies, and output price supports†

Pulse production in India has stagnated relative to staple grains and cash crops, raising concerns about rural protein consumption. We experimentally evaluate an effort to increase local pulse production in Bihar. This intervention consisted of 2 years of input subsidies and extension to facilitate learning, followed by the creation of marketing organizations and a year of output price support to raise profitability. Farmers respond to price signals by expanding inputs when subsidized and increasing pulse sales under price supports. However, we see no evidence that the program shifted equilibrium production portfolios as pulses return to pre‐intervention levels after the support ends. Results indicate that short‐term learning by doing cannot overcome long‐run barriers to local pulse production, even when farmers have a viable outlet to sell their surplus output.
Developing a Translational Team Training Program using the Wisconsin Interventions in Team Science Framework

Abstract The Clinical and Translational Science Awards (CTSA) Program supports a national network of medical research institutions working to improve the translational process. High-performing translational teams (TTs) are critical for advancing evidence-based approaches that improve human health. When focused on content-appropriate knowledge, skills, and attitudes, targeted training results in the substantial internalization of training content, producing new skills that can be applied to improve team outputs, outcomes, and benefits. More rigorous approaches to develop, test, and evaluate interventions are needed, and we used the Wisconsin Interventions in Team Science framework as a model to systematize our efforts. We designed, built, and tested a five-session TT Training Program for translational researchers. The 90-minute sessions were pilot-tested with 47 postdoctoral fellows and evaluated through a structured evaluation plan. Ninety-five percent of post-session survey respondents indicated that the content and skills provided would make them more effective collaborators, and one hundred percent would recommend the sessions to colleagues. Respondents’ scores increased from pretest to posttest for most learning outcomes. Refinements from participant feedback are described. This work provides a foundation for the continued evolution of evidence-based training programs in the CTSA environment.
Current development in surgical techniques, graft selection and additional procedures for anterior cruciate ligament injury: a path towards anatomic restoration and improved clinical outcomes—a narrative review

Background and Objective Anterior cruciate ligament (ACL) reconstruction has been widely used for ACL injury for a long time. However, residual rotational instability and osteoarthritic changes after ACL reconstruction have been identified as problems. Thus, anatomic reconstruction techniques, various types of grafts and additional procedures have been desired to improve the clinical outcomes and knee instability. Although clinical outcomes and knee stability are better than in the past, ipsilateral graft failures still occur in 4–17% and osteoarthritic changes are seen in about 20% of patients after ACL reconstruction. To remedy these problems, it is necessary to improve the understanding of various surgical techniques and grafts and to pursue further improvement of surgical techniques. Therefore, the objective of this review is to summarize the advantages and disadvantages of various surgical techniques and graft selection, and additional procedures for ACL injury. Methods A literature review was conducted on the surgical procedures for ACL injury. Recent trends in surgical techniques, graft selection, and additional procedures for ACL injury were described. We performed a literature search in PubMed for studies published from origin to May 8, 2023. Studies were required to be English-language articles. Key Content and Findings Although many reports indicate that double-bundle ACL reconstruction is comparable to anatomic single-bundle (SB) reconstruction, intraoperative complications such as tunnel coalition exist in double-bundle reconstruction, and the technique needs to be improved. ACL repair has shown good short-term results, but long-term results need to be examined in the future. Quadriceps tendon autograft is being used more frequently, but hamstrings tendon autograft and bone-patellar tendon-bone autograft also have good results. In addition, in higher-risk cases, lateral extra-articular tenodesis (LET) and anterolateral ligament (ALL) reconstruction can be performed with good results. Conclusions To further improve clinical outcomes, more anatomical reconstructions should be pursued. Autografts are better than allografts and synthetic grafts, but further study is needed to determine which graft is better. Additional procedures should be performed in highly unstable cases and in revision cases.