Miracle-dz/UniFAR-FTUs huggingface dataset:
Association of the retail food environment, BMI, dietary patterns, and socioeconomic position in urban areas of Mexico

The retail food environment is a key modifiable driver of food choice and the risk of non-communicable diseases (NCDs). This study aimed to assess the relationship between the density of food retailers, body mass index (BMI), dietary patterns, and socioeconomic position in Mexico. Cross-sectional dietary data, BMI and socioeconomic characteristics of adult participants came from the nationally representative 2012 National Health and Nutrition Survey in Mexico. Geographical and food outlet data were obtained from official statistics. Densities of food outlets per census tract area (CTA) were calculated. Dietary patterns were determined using exploratory factor analysis and principal component analysis. The association of food environment variables, socioeconomic position, BMI, and dietary patterns was assessed using two-level multilevel linear regression models. Three dietary patterns were identified—the healthy, the unhealthy and the carbohydrates-and-drinks dietary pattern. Lower availability of fruit and vegetable stores was associated with an unhealthier dietary pattern whilst a higher restaurant density was associated with a carbohydrates-and-drinks pattern. A graded and inverse association was observed for fruit and vegetable store density and socioeconomic position (SEP)—lower-income populations had a reduced availability of fruit and vegetable stores, compared with higher-income populations. A higher density of convenience stores was associated with a higher BMI when adjusting for unhealthy dietary patterns. Upper-income households were more likely to consume healthy dietary patterns and middle-upper-income households were less likely to consume unhealthy dietary patterns when exposed to high densities of fruit and vegetable stores. When exposed to a high concentration of convenience stores, lower and upper-lower-income households were more likely to consume unhealthy dietary patterns. Food environment and sociodemographic conditions within neighbourhoods may affect dietary behaviours. Food environment interventions and policies which improve access to healthy foods and restrict access to unhealthy foods may facilitate healthier diets and contribute to the prevention of NCDs.
High-risk group and functional subtypes of non-suicidal self-injury in young adults with mental disorders

Background Identifying high-risk groups of non-suicidal self-injury (NSSI) with multiple risk factors and different functional subtypes contribute to implementing person-centered interventions. Methods We investigated NSSI profiles among a sample of 258 psychiatric inpatients aged 18–25 years. All participants completed well-validated measures of internal personal and external environmental characteristics. One-hundred and ninety patients reported a lifetime history of NSSI and completed an additional NSSI assessment. A k-means cluster analysis was conducted to extract characteristics of risk factors and functional subtypes. Independent sample t-test, analysis of variance and χ2 test were used to test the difference of demographic statistical factors, risk factors and functional scores among groups with different frequency of NSSI. Results The clustering of risk factors analyses supported 4-clusters. The proportion of repeat NSSI patients was the highest (67.1%) in the group with unfavorable personal and unfavorable environmental characteristics. Functional subtype clustering analyses supported 5-clusters. Among patients with repeated NSSI, those with depression were mainly accompanied by the “Sensation Seeking” subtype (39.7%), bipolar disorder mainly supported the “Anti-suicide” subtype (37.9%), and eating disorders were mostly “Social Influence” subtype (33.3%). There was an interaction between functional subtypes and mental disorders. Limitations All participants were in treatment in a psychiatric service and the results may not be generalizable to a community sample. The data included retrospective self-report which may be inaccurate due to recall bias. Conclusion It is necessary to identify high-risk groups of NSSI who with unfavorable personal and environmental characteristics and clinical interventions need to consider the heterogeneity of patients’ functional subtypes of NSSI.
HYDRODYNAMIC INTERACTION OF TWO SPHERICAL BUBBLES RISING IN-LINE: A SEMI-ANALYTICAL APPROACH

A model is proposed to relate the flow structure in the wake behind a leading bubble with the hydrodynamic force acting on the trailing bubble rising in-line. The model is valid at separation distances between bubbles (s) within the same order of magnitude as their diameters (dB) (2.5 ≤ s/dB ≤ 14.5) and moderate-to-large particle Reynolds numbers (50 ≤ Re1 ≤ 300). An equation for the axial velocity profile in the wake of a spherical bubble was proposed in the form of an analytical approximation, but incorporating a theoretically reasoned artificial origin, which was fitted to numerical data. This equation, once substituted in a general hydrodynamic force model, resulted in a predictive equation explaining quantitatively the in-line interaction of a pair of bubbles in terms of the average axial velocity in the leading bubble wake. Moreover, the force experienced by the leading bubble due to the trailing bubble presence was obtained, and the theoretical equilibrium distances between the bubbles were calculated; good agreement with known behavior was achieved.
The Gaussian map for rational ruled surfaces

In this paper the Gaussian map Φ : Λ 2 H 0 (C, K)→H 0 (C, 3K) of a smooth curve C lying on a minimal rational ruled surface is computed. It is shown that the corank of Φ is determined for almost all such curves by the rational surface in which it lies. Hence, expect for some special cases, a curve cannot lie on two nonisomorphic minimal rational ruled surfaces
Oxidative stress associated with impaired autonomic control and severity of lung function in chronic obstructive pulmonary disease patients

Oxidative stress has been suggested to play a role in the pathogenesis of chronic obstructive pulmonary disease (COPD). This study aimed to investigate a link between malondialdehyde (MDA) levels, pulmonary function, and cardiac autonomic control in patients with COPD. Plasma levels of MDA, heart rate variability, and pulmonary function were measured in 50 clinically stable COPD patients and 50 normal male controls. COPD patients exhibited lower means of the standard deviations of all normal to normal (NN) intervals (SDNN), the square root of the mean of the sum of the squares of differences between adjacent NN intervals (RMSSD), and high frequency (HF). Nevertheless, they presented greater low frequency (LF) and low frequency/high frequency ratio (LF/HF ratio) in supine and head-up tilt positions than controls (P<0.001). More-over, a negative correlation between MDA levels with SDNN (P<0.001) and a positive correlation with LF (P<0.01) and LF/HF ratio (P<0.05) were observed in both positions. In COPD patients, plasma MDA levels were 2.3 times greater than controls (4.33±2.03 μM vs. 1.89±0.39 μM, P<0.001), and they were inversely correlated with forced vital capacity, forced expiratory volume in 1 sec, midexpiratory flow, and peak expiratory flow (P<0.001). Our findings suggest a potential role for oxidative stress in impaired cardiac autonomic control and clinical relevance of plasma MDA levels as a predictor of severity of COPD in COPD patients.
Characteristics of Soil DOM and Its Effect on the Transformation of Potentially Toxic Elements (PTE) Forms under Organic Fertilizer Return Conditions

In order to explore the effects of the composition and structure of soil’s dissolved organic matter (DOM) and its electron transfer capacity (ETC) on the bioavailability of the potential toxic elements chromium (Cr), lead (Pb) and cadmium (Cd) after the application of decomposed pig manure organic fertilizer, three-dimensional fluorescence spectroscopy (3D-EEMs), parallel factor analysis (PARAFAC) and electrochemical methods were used to analyze the composition characteristics of DOM in soil solution and the changes in the ETC, and the dynamic relationship between the relative content of DOM, ETC and various forms of potential toxic elements was explored by means of a Pearson correlation analysis and redundancy analysis (RDA). Among them, Cr, Pb and Cd were the elements with significant biological toxicity in farmland soil. The results indicated the following: (1) The soil DOM before and after returning the organic fertilizer to the field contained four components: UV and UVA humic-like (C1), tryptophan-like and UVA humic-like (C2), Exogenous and visible humic-like (C3) and tyrosine-like (C4). Humus-like was the main component. (2) After applying organic fertilizer, the relative contents of the DOM humus and tyrosine-like components in the soil increased by 8% and 8.73%, respectively. In this process, the DOM electron-accepting capacity (EAC) and electron-donating capacity (EDC) increased by 39.98% and 27.91%, respectively. (3) The humic-like fraction showed a highly significant positive correlation with ETC (p < 0.01), and the tyrosine-like fraction showed a significant negative correlation with ETC (p < 0.05). (4) The humus-like substance and ETC were positively correlated with the total amount, reducible state and oxidizable state of the potential toxic elements and negatively correlated with the weak acid extracted state and residue state; this showed that the humus-like components and ETC were more helpful for the transformation of the weak acid extracted state to the reducible state, oxidizable state and residue state in the interaction between the DOM components and Cr, Pb and Cd. In summary, the reasonable application of organic fertilizer could improve the relative content of DOM and ETC in soil, inhibit the biological toxicity of potential toxic elements in soil and provide a theoretical basis for the safe use of organic fertilizer.
In Vivo Reversal of P-Glycoprotein-Mediated Drug Resistance in a Breast Cancer Xenograft and in Leukemia Models Using a Novel, Potent, and Nontoxic Epicatechin EC31

The modulation of P-glycoprotein (P-gp, ABCB1) can reverse multidrug resistance (MDR) and potentiate the efficacy of anticancer drugs. Tea polyphenols, such as epigallocatechin gallate (EGCG), have low P-gp-modulating activity, with an EC50 over 10 μM. In this study, we optimized a series of tea polyphenol derivatives and demonstrated that epicatechin EC31 was a potent and nontoxic P-gp inhibitor. Its EC50 for reversing paclitaxel, doxorubicin, and vincristine resistance in three P-gp-overexpressing cell lines ranged from 37 to 249 nM. Mechanistic studies revealed that EC31 restored intracellular drug accumulation by inhibiting P-gp-mediated drug efflux. It did not downregulate the plasma membrane P-gp level nor inhibit P-gp ATPase. It was not a transport substrate of P-gp. A pharmacokinetic study revealed that the intraperitoneal administration of 30 mg/kg of EC31 could achieve a plasma concentration above its in vitro EC50 (94 nM) for more than 18 h. It did not affect the pharmacokinetic profile of coadministered paclitaxel. In the xenograft model of the P-gp-overexpressing LCC6MDR cell line, EC31 reversed P-gp-mediated paclitaxel resistance and inhibited tumor growth by 27.4 to 36.1% (p < 0.001). Moreover, it also increased the intratumor paclitaxel level in the LCC6MDR xenograft by 6 fold (p < 0.001). In both murine leukemia P388ADR and human leukemia K562/P-gp mice models, the cotreatment of EC31 and doxorubicin significantly prolonged the survival of the mice (p < 0.001 and p < 0.01) as compared to the doxorubicin alone group, respectively. Our results suggested that EC31 was a promising candidate for further investigation on combination therapy for treating P-gp-overexpressing cancers.
Experimental Study of the Flow and Thermal Development of a Row of Cooling Jets Impinging on a Rotating Concave Surface

The paper reports an experimental study of impingement cooling in a rotating passage of semi-cylindrical cross section. Cooling fluid is injected from a row of five jet holes along the centerline of the flat surface of the passage and strikes the concave surface. The cooling passage rotates orthogonally about an axis parallel to that of the jets. Tests have been carried out, using water both within the passage and as the jet fluid, at a fixed Reynolds number of 15,000, for clockwise and counter-clockwise rotation. Local Nusselt number measurements, using the liquid-crystal technique, show that under stationary conditions a high Nusselt number region develops around each impingement point, with secondary peaks half-way between impingement points. Rotation reduces heat transfer, leads to the disappearance of all secondary peaks and also, surprisingly of some of the primary peaks. Flow visualization tests suggest that these changes in thermal behavior are caused because rotation increases the spreading rate of the jets. LDA and PIV measurements are also presented. They show that under stationary conditions the five jets exhibit a similar behavior, with their cores remaining intact up to the point of impingement at the top dead center. The LDA and PIV studies help explain the rather surprising thermal behavior under rotating conditions.
Direct Numerical Simulation of Naturally Evolving Free Circular Jet

Direct numerical simulation (DNS) of incompressible, spatially developing circular jets at a moderate Reynolds number of 1030 is performed to understand the details of the evolution of the flow field. The axisymmetric shear layer rolls up in the near field of the jet forming vortex rings. The rings tilt as they convect downstream before becoming turbulent in the far field. The evolution of vortical structures reveals the presence of a helical structure in the flow field along with the occurrence of vortex pairing. The time-averaged streamwise velocity distribution shows self-similarity in the far field. The cross-streamwise distribution of the Reynolds stresses also shows weak self-similarity downstream as the flow is not fully developed within the streamwise length of the computational domain. A detailed comparison with experiments is carried out and the computed time-averaged as well as statistical data shows excellent match with the experimental results. Numerical simulation also reveals various transitions during flow evolution in the streamwise direction.
BSDEs with Time-Delayed Generators of a Moving Average Type with Applications to Non-Monotone Preferences

In this article we consider backward stochastic differential equations with time-delayed generators of a moving average type. The classical framework with linear generators depending on (Y(t), Z(t)) is extended and we investigate linear generators depending on . We derive explicit solutions to the corresponding time-delayed BSDEs and we investigate in detail main properties of the solutions. An economic motivation for dealing with the BSDEs with the time-delayed generators of the moving average type is given. We argue that such equations may arise when we face the problem of dynamic modelling of non-monotone preferences. We model a disappointment effect under which the present pay-off is compared with the past expectations and a volatility aversion which causes the present pay-off to be penalized by the past exposures to the volatility risk.
Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils

The advance of high-throughput molecular biology tools allows in-depth profiling of microbial communities in soils, which possess a high diversity of prokaryotic microorganisms. Amplicon-based sequencing of 16S rRNA genes is the most common approach to studying the richness and composition of soil prokaryotes. To reliably detect different taxonomic lineages of microorganisms in a single soil sample, an adequate pipeline including DNA isolation, primer selection, PCR amplification, library preparation, DNA sequencing, and bioinformatic post-processing is required. Besides DNA sequencing quality and depth, the selection of PCR primers and PCR amplification reactions arguably have the largest influence on the results. This study tested the performance and potential bias of two primer pairs, i.e., 515F (Parada)-806R (Apprill) and 515F (Parada)-926R (Quince) in the standard pipelines of 16S rRNA gene Illumina amplicon sequencing protocol developed by the Earth Microbiome Project (EMP), against shotgun metagenome-based 16S rRNA gene reads. The evaluation was conducted using five differently managed soils. We observed a higher richness of soil total prokaryotes by using reverse primer 806R compared to 926R, contradicting to in silico evaluation results. Both primer pairs revealed various degrees of taxon-specific bias compared to metagenome-derived 16S rRNA gene reads. Nonetheless, we found consistent patterns of microbial community variation associated with different land uses, irrespective of primers used. Total microbial communities, as well as ammonia oxidizing archaea (AOA), the predominant ammonia oxidizers in these soils, shifted along with increased soil pH due to agricultural management. In the unmanaged low pH plot abundance of AOA was dominated by the acid-tolerant NS-Gamma clade, whereas limed agricultural plots were dominated by neutral-alkaliphilic NS-Delta/NS-Alpha clades. This study stresses how primer selection influences community composition and highlights the importance of primer selection for comparative and integrative studies, and that conclusions must be drawn with caution if data from different sequencing pipelines are to be compared.
The association of catestatin and endocan with the effects of cardiac shock wave therapy: Biomarker sub-study of the randomized, sham procedure-controlled trial

Introduction Cardiac shock-wave therapy (CSWT) is a non-invasive regenerative treatment method based on low-frequency ultrasound waves, which stimulate angiogenesis. Current data about the effects of revascularization procedures on angiogenesis biomarkers is limited. Recently, an association of catestatin and endocan with coronary collateral development was shown in several trials. In this study, we aimed to evaluate the impact of CSWT on the dynamics of catestatin and endocan levels and to assess their correlation with parameters of myocardial perfusion and function. Methods Prospective, randomized, triple-blind, sham procedure-controlled study enrolled 72 adult subjects who complied with defined inclusion criteria (NCT02339454). We measured biomarkers in 48 patients with stable angina (24 patients of CSWT group, 24 patients of sham-procedure group). Additionally, patients were divided into responders and non-responders according to improvement in myocardial perfusion and/or contractility assessed by myocardial scintigraphy and dobutamine echocardiography (30 and 13 patients, respectively). The blood samples were collected at baseline, after the last treatment procedure (9th treatment week) and at 6-month follow-up to evaluate biomarkers concentration and stored at –80° until analysis. Serum catestatin and endocan levels were determined by commercially available ELISA kits. Results Serum catestatin concentration significantly increased in all patients. While endocan levels significantly decreased in the responders sub-group. The increase in catestatin levels at 9th week and 6 months was positively associated with improvement in summed difference score (rho = 0.356, p = 0.028) and wall motion score, WMS (rho = 0.397, p = 0.009) at 6 months in the whole study population. Meanwhile, the decrease in endocan levels over 6 months was positively correlated with improvement in WMS at 3- and 6- months (r = 0.378, p = 0.015 and r = 0.311, p = 0.045, respectively). ROC analysis revealed that a change at 6 months in catestatin and endocan levels significantly predicted improvement in myocardial perfusion and contractile function with 68.9% sensitivity and 75.0% specificity (p = 0.039) and 51.7% sensitivity, and 91.7% specificity (p = 0.017), respectively. Baseline endocan concentration and its change at 6 months predicted response to CSWT with 68.8% sensitivity and 83.3% specificity (p = 0.039) and 81.3% sensitivity and 100% specificity (p < 0.0001), respectively. Conclusion This study demonstrates the association of increase in catestatin and decrease in endocan levels with the improvement of myocardial perfusion and contractile function. The potential predictive value of catestatin and endocan dynamics for the response to regenerative therapy is shown.
Malonyl-CoA Accumulation as a Compensatory Cytoprotective Mechanism in Cardiac Cells in Response to 7-Ketocholesterol-Induced Growth Retardation

The major oxidized product of cholesterol, 7-Ketocholesterol (7KCh), causes cellular oxidative damage. In the present study, we investigated the physiological responses of cardiomyocytes to 7KCh. A 7KCh treatment inhibited the growth of cardiac cells and their mitochondrial oxygen consumption. It was accompanied by a compensatory increase in mitochondrial mass and adaptive metabolic remodeling. The application of [U-13C] glucose labeling revealed an increased production of malonyl-CoA but a decreased formation of hydroxymethylglutaryl-coenzyme A (HMG-CoA) in the 7KCh-treated cells. The flux of the tricarboxylic acid (TCA) cycle decreased, while that of anaplerotic reaction increased, suggesting a net conversion of pyruvate to malonyl-CoA. The accumulation of malonyl-CoA inhibited the carnitine palmitoyltransferase-1 (CPT-1) activity, probably accounting for the 7-KCh-induced suppression of β-oxidation. We further examined the physiological roles of malonyl-CoA accumulation. Treatment with the inhibitor of malonyl-CoA decarboxylase, which increased the intracellular malonyl-CoA level, mitigated the growth inhibitory effect of 7KCh, whereas the treatment with the inhibitor of acetyl-CoA carboxylase, which reduced malonyl-CoA content, aggravated such a growth inhibitory effect. Knockout of malonyl-CoA decarboxylase gene (Mlycd−/−) alleviated the growth inhibitory effect of 7KCh. It was accompanied by improvement of the mitochondrial functions. These findings suggest that the formation of malonyl-CoA may represent a compensatory cytoprotective mechanism to sustain the growth of 7KCh-treated cells.
A two-stage spectral model for sound texture perception: Synthesis and psychophysics

The natural environment is filled with a variety of auditory events such as wind blowing, water flowing, and fire crackling. It has been suggested that the perception of such textural sounds is based on the statistics of the natural auditory events. Inspired by a recent spectral model for visual texture perception, we propose a model that can describe the perceived sound texture only with the linear spectrum and the energy spectrum. We tested the validity of the model by using synthetic noise sounds that preserve the two-stage amplitude spectra of the original sound. Psychophysical experiment showed that our synthetic noises were perceived as like the original sounds for 120 real-world auditory events. The performance was comparable with the synthetic sounds produced by McDermott-Simoncelli's model which considers various classes of auditory statistics. The results support the notion that the perception of natural sound textures is predictable by the two-stage spectral signals.