Miracle-dz/UniFAR-FTUs huggingface dataset:
Diet selection by cattle grazing Stylosanthes-grass pastures in the seasonally dry tropics: effect of year, season, stylo species and botanical composition

The dietary preference of cattle grazing Stylosanthes-based pastures in the seasonally dry tropics of North Queensland was studied using faecal carbon ratios (S13C) to determine grass-legume proportions. Estimates were made at monthly intervals for several years in 1 experiment to determine the effect of year, season and botanical composition on dietary stylo proportions. In another experiment, the effect of stylo cultivars (Verano and Seca) on dietary preference was monitored for 17 months. Where pastures provided ample opportunity for selection, cattle showed a strong preference for grass in the early wet season and in the late dry season. The proportion of stylo in the diet increased during the wet season and reached peak proportions (as high as 80%) in the late wet season or early dry season. Dietary stylo proportions decreased as pastures dried off and as the stylo shed leaf or became more stemmy. The length of the wet season and the amount and distribution of rainfall had a major influence on the seasonal pattern of diet selection. Stylo rarely fell below 20% in the diet. On an annual basis, stylo accounted for about 45% of the diet which was appreciably higher than the proportion of stylo in the pasture. Dietary stylo proportions were higher on Seca-based pasture than on Verano-based pasture. The avoidance of stylo in the early wet season was less pronounced with Seca compared with Verano. Later in the season Seca was the dominant dietary component for a much longer period than Verano. The effect of botanical composition on dietary grass-legume proportions varied between and within years. Correlations between grass-legume proportions in the pasture and in the diet were highest in the late dry season and early wet season when preference for grass was strongest. At the end of the wet season when cattle preferred stylo, dietary stylo was not related to pasture stylo content except in a drought year. Averaged over the full year, dietary stylo content was significantly correlated with pasture stylo content in all years and the correlation was highest in a drought year when there was a high level of utilisation and less opportunity for selection. A simple model relating dietary stylo to pasture stylo was developed and is discussed.
Foraging behavior and growth of isolated larvae of a social caterpillar, Malacosoma americanum

In laboratory experiments, isolated eastern tent caterpillars, Malacosoma americanum (Fabricius) (Lepidoptera: Lasiocampidae), grew more slowly than their grouped siblings even though factors previously reported to give grouped caterpillars an advantage were eliminated from our experimental design. Analysis of time‐lapse videorecordings of daily foraging bouts showed that, despite their slower growth, isolated individuals fed significantly more often than their grouped siblings. This finding is consistent with previous observations showing that the rate at which tent caterpillars assimilate food is largely independent of foraging frequency and suggests that increased metabolic costs associated with superfluous activity may cause isolated caterpillars to grow slower. More rapid growth of grouped caterpillars also appears attributable to the significantly longer periods of time solitary caterpillars spent inactive during episodes of molting. Our study shows that the distinctive temporal pattern of foraging characteristic of intact colonies of eastern tent caterpillars is a emergent property of the group.
Levantamento fitossociológico em pastagens

Objective of this study was to identify the weed community in areas of pasture. The phyto-sociological survey was conducted during November and December, 2009 in three regions: two located in Tangara da Serra-MT (region A = areas surrounding the town; and region B = areas in the Antonio Conselheiro Settlement and one area in Barra of the Bugres-MT (region C). Five properties were analyzed in each region, each containing 10 plots of 25 m2. The weed species were counted and identified in the plots. Data were analyzed by calculating density, frequency, abundance, relative density, relative frequency, relative abundance, importance value index (IVI), and similarity index. Thirty-eight weed species were identified, distributed among 18 families, with Asteraceae (7), Fabaceae (6), Arecaceae (3), Euforbiaceae (3) and Poaceae (3) being the most representative in number of species. The species most frequently found were: region A - Sida spp. (IVI: 127.93) and Eragrostis plana (IVI: 42.18); region B - Eragrostis plana (IVI: 54.78), Mimosa wedelliana (IVI: 52.39), and Sida spp. (IVI: 50.30); and region C - Sida spp. (IVI: 73.92), and Mimosa wedelliana (IVI: 26.55). A significant similarity was found between regions A and B (52.63%) and between regions B and C (50.98%).
The Development of Haliotis tuberculata, with Special Reference to Organogenesis during Torsion

Investigation of the development of Haliotis tuberculata , Linnaeus, was undertaken as a natural sequel to an examination of the bionomics and anatomy of Haliotis (Crofts 1929, p. 159). It is an attempt to elucidate the organogenesis during the changing larval habits, in the hope of adding to the scanty ontogenetical evidence available towards solving the problems of gastropod evolution. Excellent accounts of the embryonic phase, including patiently worked out details of the cleavage and of gastrulation, have been published for Crepidula (Conklin 1897), Patella (Patten 1886; Wilson 1904; and Smith 1935), Trochus (Robert 1902), Physa (Wierzejski 1905), Dentalium (Wilson 1904). The only comprehensive accounts of gastropod larval development already published are of Paludina (Erlanger 1891; Tonniges 1896; Drummond 1902; Andersen 1924) and of Patella (Patten 1886; Smith I935). The accounts of Paludina elucidate the details of development of the coelom and its derivatives. The viviparous habit and consequent loss of free larval life in Paludina , however, make it a very unsuitable example of gastropod development. Evolutionary stages are more likely to be traced from the development of less specialized gastropods, an adequate selection of whose free-living larval stages can be obtained. The larval development of Patel, Acmaea, Trochus and Haliotis has been described, in varying completeness for the different genera. Patten’s work on Patella coerulea (1886) gives a description only of the beginning of organogenesis. After a lapse of fifty years a more detailed account of the development of P. vulgata has been given by Smith (1935). This work gives a new interpretation of the development of the mesoderm, of the muscles and of the nervous system. The dorsal retractor muscle of the larva, which Patten indicated for P. coerula , is shown in P. vulgata to be placed asymmetrically and torsion takes place “ under the action” of this muscle.
All-trans-retinoic Acid Increases Transforming Growth Factor-β2 and Insulin-like Growth Factor Binding Protein-3 Expression through a Retinoic Acid Receptor-α-dependent Signaling Pathway*

Retinoids, including retinol and retinoic acid derivatives, maintain the normal growth and differentiation of human bronchial epithelial cells. The signaling pathways through which retinoids mediate these effects have not been defined. Insulin-like growth factor binding protein-3 (IGFBP-3) and the transforming growth factor-β (TGF-β) gene family (β1–3) were examined as potential components of the retinoid signaling pathway in normal human bronchial epithelial cells. All-trans-retinoic acid (t-RA) increased the levels of TGF-β2 and IGFBP-3 mRNA and of secreted TGF-β and IGFBP-3 proteins. An antagonist of retinoic acid receptor-α, LG100629, abrogated the increase in TGF-β2 and IGFBP-3 mRNA levels induced by t-RA. t-RA increased IGFBP-3 mRNA levels transiently from 1 to 6 h, and subsequently a sustained increase began at 72 h, which coincided with the appearance of active TGF-β in the media. Treatment with TGF-β2 increased IGFBP-3 mRNA levels, but treatment with latency-associated peptide, which inactivates secreted TGF-β, did not abrogate the effect of t-RA on IGFBP-3 expression. These findings provide evidence that t-RA increased TGF-β2 and IGFBP-3 expression through an retinoic acid receptor-α-dependent pathway, and the increase in IGFBP-3 expression by t-RA did not require activation of the TGF-β pathway by autocrine or paracrine mechanisms.
Adaptive Genetic Variation on the Landscape: Methods and Cases

There is a growing interest in identifying ecological factors that influence adaptive genetic diversity patterns in both model and nonmodel species. The emergence of large genomic and environmental data sets, as well as the increasing sophistication of population genetics methods, provides an opportunity to characterize these patterns in relation to the environment. Landscape genetics has emerged as a flexible analytical framework that connects patterns of adaptive genetic variation to environmental heterogeneity in a spatially explicit context. Recent growth in this field has led to the development of numerous spatial statistical methods, prompting a discussion of the current benefits and limitations of these approaches. Here we provide a review of the design of landscape genetics studies, the different statistical tools, some important case studies, and perspectives on how future advances in this field are likely to shed light on important processes in evolution and ecology.
Transgenic Bt potato and conventional insecticides for Colorado potato beetle management: comparative efficacy and non‐target impacts

Field studies were conducted in 1992 and 1993 in Hermiston, Oregon, to evaluate the efficacy of transgenic Bt potato (Newleaf®, which expresses the insecticidal protein Cry3Aa) and conventional insecticide spray programs against the important potato pest, Leptinotarsa decemlineata (Say), Colorado potato beetle (CPB), and their relative impact on non‐target arthropods in potato ecosystems. Results from the two years of field trials demonstrated that Newleaf potato plants were highly effective in suppressing populations of CPB, and provided better CPB control than weekly sprays of a microbial Bt‐based formulation containing Cry3Aa, bi‐weekly applications of permethrin, or early‐ and mid‐season applications of systemic insecticides (phorate and disulfoton). When compared with conventional potato plants not treated with any insecticides, the effective control of CPB by Newleaf potato plants or weekly sprays of a Bt‐based formulation did not significantly impact the abundance of beneficial predators or secondary potato pests. In contrast to Newleaf potato plants or microbial Bt formulations, however, bi‐weekly applications of permethrin significantly reduced the abundance of several major generalist predators such as spiders (Araneae), big‐eyed bugs (Geocorus sp.), damsel bugs (Nabid sp.), and minute pirate bugs (Orius sp.), and resulted in significant increases in the abundance of green peach aphid (GPA), Myzus persicae (Sulzer) – vector of viral diseases, on the treated potato plots. While systemic insecticides appeared to have reduced the abundance of some plant sap‐feeding insects such as GPA, lygus bugs, and leafhoppers, early and mid‐season applications of these insecticides had no significant impact on populations of the major beneficial predators. Thus, transgenic Bt potato, Bt‐based microbial formulations and systemic insecticides appeared to be compatible with the development of integrated pest management (IPM) against other potato pests such as GPA because these CPB control measures have little impact on major natural enemies. In contrast, the broad‐spectrum pyrethroid insecticide (permethrin) is less compatible with IPM programs against GPA and the potato leafroll viral disease.
Taking Notes on the Fly Helps BERT Pre-training

How to make unsupervised language pre-training more efficient and less resource-intensive is an important research direction in NLP. In this paper, we focus on improving the efficiency of language pre-training methods through providing better data utilization. It is well-known that in language data corpus, words follow a heavy-tail distribution. A large proportion of words appear only very few times and the embeddings of rare words are usually poorly optimized. We argue that such embeddings carry inadequate semantic signals. They could make the data utilization inefficient and slow down the pre-training of the entire model. To solve this problem, we propose Taking Notes on the Fly (TNF). TNF takes notes for rare words on the fly during pre-training to help the model understand them when they occur next time. Specifically, TNF maintains a note dictionary and saves a rare word's context information in it as notes when the rare word occurs in a sentence. When the same rare word occurs again in training, TNF employs the note information saved beforehand to enhance the semantics of the current sentence. By doing so, TNF provides a better data utilization since cross-sentence information is employed to cover the inadequate semantics caused by rare words in the sentences. Experimental results show that TNF significantly expedite the BERT pre-training and improve the model's performance on downstream tasks. TNF's training time is $60\%$ less than BERT when reaching the same performance. When trained with same number of iterations, TNF significantly outperforms BERT on most of downstream tasks and the average GLUE score.
Growth and production of heterotrophic nanoflagellates in a meso-eutrophic lake

The growth of heterotrophic nanoflagellates (HNF) in mesotrophic Lake Constance was measured in situ during a 13 month period. Experiments were conducted with 10 urn pre-filtered late water incubated in diffusion chambers at 3 m water depth at the sampling location for 24 h. Growth rates were calculated from changes in cell numbers occurring during the period of incubation. Growth rates of all dominant taxa showed pronounced seasonal variation (-0.13 to 1.76 day') and were gener- ally highest in summer at high water temperatures. In situ growth rates were well below maximum growth rates known for the respective and similar species from laboratory experiments. While water temperature was a key parameter positively related to the growth of all HNF species, the effect of various potential food items was taxon specific and less clear. Bacterial abundance was equally impor- tant as temperature for growth in the small bacterivorous Spumella sp. , but was insignificant for growth rates of the larger omnivorous Kathablepharis sp. In Spumella sp. , 84% of the observed seasonal variation of its gTowth rate could be explained by temperature and bacterial food supply. Based on these results, a multiple linear regression equation with temperature and bacterial concen- tration as dependent variables was calculated for the growth rate of Spumella. Taxon-specific pro- duction rates were derived from growth rates and average biomass of these two species, and compared to total HNF production estimated from previously measured community growth rates and biomass in Lake Constance. Production peaks of Spumella sp. and Kathablepharis sp. alternated seasonally. Total HNF production ranged from -0.01 to 10 mg C m~3 day1. The average seasonal production varied between 1.4 and 3.5 mg C nr3 day-1 over 6 consecutive years. These small protozoa thus con- tribute a substantial amount to total zooplankton production in Lake Constance.
Comparison of Agar screen and duplex-PCR methods in determination of methicillin-resistant Staphylococcus aureus (MRSA) strains isolated from nasal carriage

Methicillin-resistant Staphylococcus aureus strains (MRSA) have become a serious health issue in engendering nosocomial infections. Due to the heterogeneity of this type of resistance, the conventional antibiotic susceptibility tests may fail to detect MRSA strains. The purpose of this research was to compare the phenotypic agar screen method with polymerase chain reaction (PCR) for detection of MRSA strains isolated from the nasal samples of hospital personnel. Totally, 52 coagulase positive S. aureus strains were isolated from nasal samples of 204 hospital personnel of Hajar Hospital affiliated to Shahrekord University of Medical Sciences. Susceptibility to oxacillin in the strains was evaluated by the phenotypic agar screen method. The presence of the methicillin resistance gene, mec A, was studied through duplex PCR method. The results of both methods were compared and the sensitivity and specificity of the methods were determined. Totally, 23 out of the 52 isolated S. aureus (44%) were phenotypically resistant to oxacillin, but 27 (52%) carried mecA gene. The sensitivity and specificity of the phenotypic agar screen method for determination of MRSA strains were found to be 81.5 and 96%, respectively. As compared to duplex PCR, oxacillin agar screen method is a simple, inexpensive, and practical phenotypic method with relatively low false positive results and thus may be suitable for verification of suspicious MRSA strains. However, for the relatively high false negative results, it may not be recommended for the primary screening of MRSA strains from the nasal samples of healthy carriers working at hospitals.
The concentration of minerals in the blood of genetically diverse groups of sheep:V. Concentrations of copper, calcium, phosphorus, magnesium, potassium, and sodium in the blood of lambs and ewes

SUMMARY Concentrations of Cu, Ca, P, Mg, K and Na were examined in the blood plasma (whole blood for P) of 149 adult ewes and their 244, 15-week-old lambs in a grassland flock of sheep. The ewes were 3 or 4 years old and of five crossbred types produced by mating Scottish Blackface females to Border Leicester, dun Forest, Dorset Horn, Finnish Landrace and Tasmanian Merino rams. The lambs in turn were the offspring of these crossbred ewes, and two rams of each of the Oxford Down, Southdown, Soay breeds and one Cheviot ram. Breed of sire (but not sire within breed) was a significant source of variation in the concentration of all the minerals, except Na, in the blood of both ewes and lambs. Other factors considered were age of ewe and sex, birth type, type of rearing, and date of birth of lamb. None of these appeared to be significant sources of variation except that twins and triplets, if reared as such, had higher concentrations of Ca in their blood than lambs born and reared as singles; however the ewes with singles were on different pasture from those rearing 2–3 lambs. For the mineral levels in the blood of the lambs there was no significant interaction of breed of ram with cross-breed of ewe. The lambs had substantially higher concentrations of Cu and P in their blood than their mothers and also significantly higher concentrations of Ca, Mg and possibly K. This may not be attributable to age alone because the lambs and their mothers also differed in genotype. Heritability estimates based on parent-offspring regression were 0·4 ±0·14 for Cu and less than 0·2 for the other minerals.
Growth of tree seedlings in a tropical dry forest in relation to soil moisture and leaf traits

Aims The growth of plant species in tropical dry forest (TDF) is expected to be largely governed by the availability of soil moisture. In this study we attempt to identify mechanisms by which seedlings of dry tropical trees cope with water stress by adjusting their leaf characteristics to water availability and micro environments, and address following questions: How are leaf traits and relative growth rate (RGR) of the dominant seedling species of TDF affected by seasonal changes in soil moisture content (SMC)? What is the relationship of functional traits with each other? Can leaf traits singly or in combination predict the growth rate of seedling species of TDF? The study was conducted in situ on four sites (viz., Hathinala, Gaighat, Harnakachar and Ranitali, listed in order of decreasing SMC) within the tropical dry deciduous forest in northern India. Methods Five leaf traits viz., specific leaf area (SLA), leaf dry matter content (LDMC), concentrations of leaf nitrogen (leaf N), phosphorus (leaf P) and chlorophyll (Chl) and two physiological processes, viz., stomatal conductance (Gsnet) and photosynthetic rate (Anet), and RGR, of four dominant tree seedling species of a TDF (viz., Buchanania lanzan, Diospyros melanoxylon, Shorea robusta and Terminalia tomentosa) on four sites were analysed for species, site and season effects over a 2-year period. Step-wise multiple regression was performed to predict RGR from mean values of SMC, leaf traits and physiological processes. Principal component analysis (PCA) was performed to observe the extent of intra- vs. inter-specific variability in the leaf traits and physiological rates. Important Findings All the traits and physiological rates were interrelated and showed significant positive relationship with RGR except for the correlation of LDMC with RGR which was not significant. Further, relationships of SMC with all leaf traits, physiological rates and RGR were significant, except for that between SMC and SLA for B. lanzan and D. melanoxylon. The slope of seedling trait:SMC relationship, a measure of phenotypic plasticity in response to soil moisture gradient, varied among species. Among the four species, T. tomentosa was the most plastic and S. robusta the least. In conclusion, leaf traits and physiological processes were strongly related to soil water availability on the one hand and seedling growth on the other. Gsnet is the most important variable which accounted for the greatest amount of variability (62%) in RGR, emphasizing the role of stomatal conductance in shaping growth patterns across spatial and temporal gradients of soil water availability. Gsnet and SMC together explained 64% variability in RGR, indicating that other traits/factors, not studied by us are also impor tant in modulating the growth of tropical tree seedlings.
The effects of colonization by Sargassum muticum on tidepool macroalgal assemblages

The impact of colonization by Sargassum muticum (Phaeophyta: Fucales) on the resident macroalgal assemblage in tidepools was investigated in northern Spain. Sargassum muticum was allowed to colonize and spread in some tidepools, and was periodically removed in others. Changes in the abundance of macrophytes were recorded at three sites over two years. The colonization by S. muticum and the subsequent changes induced on the native assemblage was extremely variable among sites. Where the invader colonized profusely, it induced changes in the macroalgal composition of tidepools. The leathery group of macrophytes was significantly affected and changes were also observed in the foliose group. It was suggested that S. muticum may take advantage of their perennial and opportunistic traits in the interaction with groups of algae with different survival strategies. However, the spatial patchiness of the colonization may mitigate the impact of the invasion at local and regional scales.