Miracle-dz/UniFAR-FTUs huggingface dataset:
Bird collisions with power lines: Prioritizing species and areas by estimating potential population‐level impacts

Power lines can represent an important source of bird mortality through collision. The identification of more susceptible species, in terms of expected population‐level impacts, requires detailed biological and mortality information that is often difficult to obtain. Here, we propose a species prioritization method based on relatively easily accessed information, aimed to identify both species and areas with the potentially highest extinction risk due to collision with power lines.
Usability of EU-TIRADS in the Diagnostics of Hürthle Cell Thyroid Nodules with Equivocal Cytology

The aim of this study was to compare the diagnostic effectiveness of EU-TIRADS in two groups of nodules with equivocal cytology (categories III-V of Bethesda system), with and without Hürthle cells (HC and non-HC). The study included 162 HC and 378 non-HC nodules with determined histopathological diagnosis (17.9% and 15.6% cancers). In both groups calculated and expected risk of malignancy (RoM) for high, intermediate and benign risk categories of EU-TIRADS were concordant. RoM for low risk category was higher than expected in both groups, but especially in HC (HC: 13.9%, non-HC: 7.0%, expected: 2–4%). The majority of cancers in HC of that category were follicular thyroid carcinomas (FTC) and Hürthle cell thyroid carcinoma (HTC) (60.0% vs. non-HC: 16.7%). The diagnostic efficacy of EU-TIRADS was lower in HC (the area under the receiver operating characteristics curve (AUC): 0.621, sensitivity (SEN): 44.8%, specificity (SPC): 78.9% for high risk threshold) than in non-HC (AUC: 0.711, SEN: 61.0%, SPC: 77.7%). AUC was the highest for category V (AUC > 0.8, both groups) and the lowest for category IV (inefficient, both group). If intermediate risk category was interpreted as an indication for surgery, 25% of cancers from category III and 21.4% from category IV would not be treated in the HC group (0.0% and 7.4% from non-HC group, respectively). EU-TIRADS does not aid making clinical decisions in patients with cytologically equivocal HC nodules, particularly those classified into category IV of Bethesda System for Reporting Thyroid Cytopathology (BSRTC).
Interaction of Cucurbit[7]uril with Oxime K027, Atropine, and Paraoxon: Risky or Advantageous Delivery System?

Antidotes against organophosphates often possess physicochemical properties that mitigate their passage across the blood–brain barrier. Cucurbit[7]urils may be successfully used as a drug delivery system for bisquaternary oximes and improve central nervous system targeting. The main aim of these studies was to elucidate the relationship between cucurbit[7]uril, oxime K027, atropine, and paraoxon to define potential risks or advantages of this delivery system in a complex in vivo system. For this reason, in silico (molecular docking combined with umbrella sampling simulation) and in vivo (UHPLC—pharmacokinetics, toxicokinetics; acetylcholinesterase reactivation and functional observatory battery) methods were used. Based on our results, cucurbit[7]urils affect multiple factors in organophosphates poisoning and its therapy by (i) scavenging paraoxon and preventing free fraction of this toxin from entering the brain, (ii) enhancing the availability of atropine in the central nervous system and by (iii) increasing oxime passage into the brain. In conclusion, using cucurbit[7]urils with oximes might positively impact the overall treatment effectiveness and the benefits can outweigh the potential risks.
Exercise training for lung transplant candidates and recipients: a systematic review

Exercise intolerance and impaired quality of life (QoL) are characteristic of lung transplant candidates and recipients. This review investigated the effects of exercise training on exercise capacity, QoL and clinical outcomes in pre- and post-operative lung transplant patients. A systematic literature search of PubMed, Nursing and Allied Health, Cochrane (CENTRAL), Scopus and CINAHL databases was conducted from inception until February, 2020. The inclusion criteria were assessment of the impact of exercise training before or after lung transplantation on exercise capacity, QoL or clinical outcomes. 21 studies met the inclusion criteria, comprising 1488 lung transplant candidates and 1108 recipients. Studies consisted of five RCTs, two quasi-experimental and 14 single-arm cohort or pilot studies. Exercise training improved or at least maintained exercise capacity and QoL before and after lung transplantation. The impact on clinical outcomes was less clear but suggested a survival benefit. The quality of evidence ranged from fair to excellent. Exercise training appears to be beneficial for patients before and after lung transplantation; however, the evidence for direct causation is limited by the lack of controlled trials. Well-designed RCTs are needed, as well as further research into the effect of exercise training on important post-transplant clinical outcomes, such as time to discharge, rejection, infection, survival and re-hospitalisation. Both inpatient and outpatient exercise training appears beneficial for improving exercise capacity and quality of life in lung transplant candidates and recipients. Further research investigating the effect on post-surgery clinical outcomes is required. https://bit.ly/2XD6J6S
Evapotranspiration, crop coefficient and water use efficiency of coriander grown in tropical environment

ABSTRACT The water scarcity is expected to intensify in the future and irrigation becomes an essential component of crop production, especially in arid and semiarid regions, where the available water resources are limited. Four field experiments were carried out at tropical environment in Brazil in 2013 and 2014, in order to evaluate the effect of planting date on crop evapotranspiration (ETc), crop coefficient (Kc), growth parameters and water use efficiency (WUE) of coriander (Coriandrum sativum) plants. The planting dates occurred during winter, spring, summer and autumn growing seasons. ETc was obtained through the soil water balance method and the reference evapotranspiration (ETo) through the Penman-Monteith method, using data collected from an automatic weather station located close to the experimental area. The results of the research showed that the mean values of coriander ETc and Kc were 139.8 mm and 0.87, respectively. Coriander water demand is higher in the summer growing season and lower in the winter; however, its yield is higher in the autumn and lower in the winter. Coriander has higher yield and development of its growth variables in the autumn growing season. The results also indicated that the interannual climate variations had significant effects on most growth variables, as yield, ETc and Kc of coriander grown in tropical environment.
IGF1 for the diagnosis of growth hormone deficiency in children and adolescents: a reappraisal

A number of studies have evaluated the role of IGF1 measurement in the diagnosis of growth hormone deficiency (GHD). This study aimed to evaluate the accuracy and the best cut-off of IGF1 SDS in the diagnosis of GHD in a large cohort of short children and adolescents. One-hundred and forty-two children and adolescents with GHD ((63 organic/genetic (OGHD), 79 idiopathic (IGHD)) and 658 short non-GHD children (median age 10.4 years) were included in the analysis. The two groups were subdivided according to age (G1 <6, G2 6 <9, G3 9 <12, G4 ≥12) and to pubertal status. Serum IGFI was measured by the same chemiluminescence assay in all samples and expressed as age- and sex-based SDS. Receiver operating characteristic (ROC) analysis was used to evaluate the optimal IGF1 SDS cut-off and the diagnostic accuracy. Median IGF1 SDS was significantly lower in the GHD than in non-GHD patients. The area under the curve (AUC) was 0.69, with the best IGF1 cut-off of −1.5 SDS (sensitivity 67.61%, specificity 62.62%). The AUC was 0.75 for OGHD and 0.63 for IGHD. The accuracy was better in the pubertal (AUC = 0.81) than the prepubertal group (AUC = 0.64). In our cohort, IGF1 measurement has poor accuracy in discriminating GHD from non-GHD. Our findings confirm and reinforce the belief that IGF1 values should not be used alone in the diagnosis of GHD but should be interpreted in combination with other clinical and biochemical parameters.
Neural correlates of standing imagery and execution in Parkinsonian patients: The relevance to striatal dopamine dysfunction

It has been reported that the cerebellar vermis is equally involved in both motor imagery about axial movement and the actual execution of postural balance in healthy human subjects, but this finding is yet to be explored in Parkinson’s disease (PD). We therefore investigated the neuronal responses during observation of standing posture, imagination of standing and the assumption of an upright posture in ten drug-naïve PD patients using positron emission tomography (PET) with [15O]H2O and evaluated dopamine dysfunction by measuring the level of dopamine transporter binding of [11C]CFT. Within-group statistical parametric mapping (SPM) analysis showed similar cerebellar activation during imagination of standing and its real execution between the PD and control groups (12 healthy subjects); i.e., increases in regional cerebral blood flow (rCBF) were observed in the anterior cerebellar vermis during motor imagination and the posterior vermis during standing. A comparison between the groups showed that the motor execution of standing significantly activated the superior part of the posterior vermis (declive VI) and the paracentral sulcus region in the PD patients, while the prefrontal cortices were deactivated during standing (p<0.001 uncorrected). Correlation analysis within the PD group revealed that the postural rCBF increases in the cerebellar vermis (pyramis) were negatively correlated with putaminal [11C]CFT binding (p<0.01, r = 0.94) and that the postural rCBF reductions in the orbitofrontal cortex were positively correlated with caudate [11C]CFT binding (p<0.05, r = 0.70). These results suggest that while the neural circuits for postural imagery and execution are intact in PD, standing performance, which requires more recruitment of dopaminergic control, may result in compensatory overstimulation of the cerebellar vermis and paracentral foot area in PD patients. Hyperactivity in these areas along with mesocortical hypofunction may be pathophysiological aspects of postural control in PD patients. Hence, our findings would help understand the modifications observed within the neural networks in relationship with postural performance, and possible compensatory mechanisms in PD.
Natural Inspired Carboxymethyl Cellulose (CMC) Doped with Ammonium Carbonate (AC) as Biopolymer Electrolyte

Green and safer materials in energy storage technology are important right now due to increased consumption. In this study, a biopolymer electrolyte inspired from natural materials was developed by using carboxymethyl cellulose (CMC) as the core material and doped with varied ammonium carbonate (AC) composition. X-ray diffraction (XRD) shows the prepared CMC-AC electrolyte films exhibited low crystallinity content, Xc (~30%) for sample AC7. A specific wavenumber range between 900–1200 cm−1 and 1500–1800 cm−1 was emphasized in Fourier transform infrared (FTIR) testing, as this is the most probable interaction to occur. The highest ionic conductivity, σ of the electrolyte system achieved was 7.71 × 10−6 Scm−1 and appeared greatly dependent on ionic mobility, µ and diffusion coefficient, D. The number of mobile ions, η, increased up to the highest conducting sample (AC7) but it became less prominent at higher AC composition. The transference measurement, tion showed that the electrolyte system was predominantly ionic with sample AC7 having the highest value (tion = 0.98). Further assessment also proved that the H+ ion was the main conducting species in the CMC-AC electrolyte system, which presumably was due to protonation of ammonium salt onto the complexes site and contributed to the overall ionic conductivity enhancement.
Sustained Incompatibility between MAPK Signaling and Pathogen Effectors

In plants, Mitogen-Activated Protein Kinases (MAPKs) are important signaling components involved in developemental processes as well as in responses to biotic and abiotic stresses. In this review, we focus on the roles of MAPKs in Effector-Triggered Immunity (ETI), a specific layer of plant defense responses dependent on the recognition of pathogen effector proteins. Having inspected the literature, we synthesize the current state of knowledge concerning this topic. First, we describe how pathogen effectors can manipulate MAPK signaling to promote virulence, and how in parallel plants have developed mechanisms to protect themselves against these interferences. Then, we discuss the striking finding that the recognition of pathogen effectors can provoke a sustained activation of the MAPKs MPK3/6, extensively analyzing its implications in terms of regulation and functions. In line with this, we also address the question of how a durable activation of MAPKs might affect the scope of their substrates, and thereby mediate the emergence of possibly new ETI-specific responses. By highlighting the sometimes conflicting or missing data, our intention is to spur further research in order to both consolidate and expand our understanding of MAPK signaling in immunity.
FROGG patterns of practice survey and consensus recommendations on radiation therapy for MIBC

1 Cancer Therapy Centre, Liverpool Hospital, New South Wales, Australia 2 Centre for Medical Radiation Physics, University of Wollongong, Wollongong, New South Wales, Australia 3 South Western Sydney Clinical School, University of New South Wales, New South Wales, Australia 4 Division of Cancer Sciences, University of Manchester, Manchester, UK 5 The Christie NHS Foundation Trust, Manchester, UK 6 Genesis Cancer Care, Queensland, Australia 7 Department of Health Sciences and Medicine, Bond University, Gold Coast, Queensland, Australia 8 Northern Sydney Cancer Centre, Royal North Shore Hospital, New South Wales, Australia 9 Northern Medical School, University of Sydney, Sydney, New South Wales, Australia 10 Department of Radiation Oncology, Newton-John Cancer Wellness and Research Centre, Austin Health, Heidelberg, Victoria, Australia 11 Latrobe University, Melbourne, Victoria, Australia 12 Sydney West Radiation Oncology, Westmead Hospital, Sydney, New South Wales, Australia 13 Princess Alexandra Hospital-ROPART, Brisbane, Queensland, Australia 14 University of Queensland, Queensland, Australia 15 Central Coast Cancer Centre, Gosford Hospital, Gosford, New South Wales, Australia 16 Genesis Cancer Care, New South Wales, Australia 17 Radiation Oncology Department, Auckland District Health Board, Auckland, New Zealand 18 Faculty of Medical and Health Sciences, University of Auckland, Auckland, New Zealand 19 Department of Radiation Oncology, Mid North Coast Cancer Institute, Coffs Harbour, New South Wales, Australia 20 University of New South Wales Rural Clinical School, Coffs Harbour, New South Wales, Australia
Development of an Intervention Targeting Multiple Health Behaviors Among High School Students: Participatory Design Study Using Heuristic Evaluation and Usability Testing

Background Mobile electronic platforms provide exciting possibilities for health behavior promotion. For instance, they can promote smoking cessation, moderate alcohol consumption, healthy eating, and physical activity. Young adults in Sweden are proficient in the use of technology, having been exposed to computers, smartphones, and the internet from an early age. However, with the high availability of mobile health (mHealth) interventions of varying quality, it is critical to optimize the usability of mHealth interventions to ensure long-term use of these health promotion interventions. Objective This study aims to investigate the usability of an mHealth intervention (LIFE4YOUth) targeting health behaviors among high school students through heuristic evaluation and usability testing. Methods A preliminary version of the LIFE4YOUth mHealth intervention, which was aimed at promoting healthy eating, physical activity, smoking cessation, and nonrisky drinking among high school students, was developed in early 2019. We completed a total of 15 heuristic evaluations and 5 usability tests to evaluate the usability of the mHealth intervention prototype to improve its functioning, content, and design. Results Heuristic evaluation from a total of 15 experts (10 employees and 5 university students, both women and men, aged 18-25 years) revealed that the major usability problems and the worst ratings, a total of 17 problems termed usability catastrophes, concerned shortcomings in displaying easy-to-understand information to the users or technical errors. The results of the usability testing including 5 high school students (both girls and boys, aged 15-18 years) showed that the design, quality, and quantity of content in the intervention may impact the users’ level of engagement. Poor functionality was considered a major barrier to usability. Of the 5 participants, one rated the LIFE4YOUth intervention as poor, 2 rated as average, and 2 assessed it as good, according to the System Usability Scale. Conclusions High school students have high expectations of digital products. If an mHealth intervention does not offer optimal functions, they may cease to use it. Optimizing the usability of mHealth interventions is a critical step in the development process. Heuristic evaluation and usability testing in this study provided valuable knowledge about the prototype from a user’s perspective. The findings may lead to the development of similar interventions targeting the high school population.
Characterization of the complete chloroplast genome of the Camellia nitidissima, an endangered and medicinally important tree species endemic to Southwest China

Abstract The Camellia nitidissima is an endangered tree species native to Southwest China with high economic and medicinal values. Genetic information of C. nitidissima would provide good knowledge for the conservation of this wild resource. In this article, we characterized the complete chloroplast genome of C. nitidissima using Illumina sequencing technology. The size of circular genome is 157,247 bp, containing a large single copy (LSC) region of 86,880 bp and a small single copy (SSC) region of 18,258 bp. The LSC region and SSC region are separated by a pair of inverted repeat regions (IRa and IRb), each of 26,068 bp. In total, 136 genes are encoded in this cp genome, including 89 protein-coding genes (81 species), 39 tRNA genes (30 species), and 8 rRNA genes (4 species). The overall G + C content of the chloroplast genome is 37.3%. The phylogenetic analysis suggests that C. nitidissima is closely related to C. petelotti.
Midpoint Relay Selection Using Social Trust and Battery Level to Enhance Throughput in Cooperative Device-to-Device Communications

Device-to-device communications in underlay mode has emerged as a promising way to enhance spectrum efficiency in cellular networks. Recently, relay selection in D2D communications underlaying cellular networks is gaining more research interest. In this paper, we propose two relay selection schemes for D2D communications underlaying cellular networks, Midpoint Relay Selection using Social Trust and Battery Level (MRS-ST-BL) and Midpoint Relay Selection using Social Distance and Battery Level (MRS-SD-BL). These proposed schemes utilize battery power level information of devices together with social trust information of users in the network for relay selection. For performance evaluation, initially we show that the throughput of state-of-the-art schemes Hybrid Relay Selection (HRS) and our previously proposed schemes Midpoint Relay Selection using Social Trust (MRS-ST) and Midpoint Relay Selection Using Social Distance (MRS-SD) decrease, when relays have varying battery power. Then, we compare the performance of our proposed schemes against existing schemes including HRS, MRS-ST and MRS-SD. The performance comparison is done at various social trust scenarios and device densities. We show that our proposed schemes can significantly improve the throughput of D2D communications, particularly when relays have different battery power levels in weak social trust scenarios. Finally, we show that the performance of our proposed scheme MRS-ST-BL varies with the change in battery power threshold.
Linking emerging contaminants exposure to adverse health effects: Crosstalk between epigenome and environment

Environmental epigenetic findings shed new light on the roles of epigenetic regulations in environmental exposure‐induced toxicities or disease susceptibilities. Currently, environmental emerging contaminants (ECs) are in focus for further investigation due to the evidence of human exposure in addition to their environmental occurrences. However, the adverse effects of these environmental ECs on health through epigenetic mechanisms are still poorly addressed in many aspects. This review discusses the epigenetic mechanisms (DNA methylation, histone modifications, and microRNA expressions) linking ECs exposure to health outcomes. We emphasized on the recent literature describing how ECs can dysregulate epigenetic mechanisms and lead to downstream health outcomes. These up‐to‐date research outputs could provide novel insights into the toxicological mechanisms of ECs. However, the field still faces a demand for further studies on the broad spectrum of health effects, synergistic/antagonistic effects, transgenerational epigenetic effects, and epidemiologic and demographic data of ECs.