Miracle-dz/UniFAR-FTUs huggingface dataset:
Method to extract multiple states in F1-ATPase rotation experiments from jump distributions

Significance In single-molecule imaging of the F1-ATPase rotation by nanoprobes, there are jumps in the angular position. Their distribution is used in a method for detecting hidden states in the transitions during rotation steps. Complementing stalling experiments, this method reveals, now in free rotation without magnetic tweezers, that the motor can be in either of 2 states at a rotation angle. A comparison between the experimental trajectories and a multistate theory reveals that an 80° substep of the coupled ATP binding and ADP release involves an intermediate state reminiscent of a 3-occupancy structure. Its lifetime (∼10 μs) is comparable with the frame time of the imaging, so, by detecting this short-lived state, the method provides an increased effective time resolution. A method is proposed for analyzing fast (10 μs) single-molecule rotation trajectories in F1 adenosinetriphosphatase (F1-ATPase). This method is based on the distribution of jumps in the rotation angle that occur in the transitions during the steps between subsequent catalytic dwells. The method is complementary to the “stalling” technique devised by H. Noji et al. [Biophys. Rev. 9, 103–118, 2017], and can reveal multiple states not directly detectable as steps. A bimodal distribution of jumps is observed at certain angles, due to the system being in either of 2 states at the same rotation angle. In this method, a multistate theory is used that takes into account a viscoelastic fluctuation of the imaging probe. Using an established sequence of 3 specific states, a theoretical profile of angular jumps is predicted, without adjustable parameters, that agrees with experiment for most of the angular range. Agreement can be achieved at all angles by assuming a fourth state with an ∼10 μs lifetime and a dwell angle about 40° after the adenosine 5′-triphosphate (ATP) binding dwell. The latter result suggests that the ATP binding in one β subunit and the adenosine 5′-diphosphate (ADP) release from another β subunit occur via a transient whose lifetime is ∼10 μs and is about 6 orders of magnitude smaller than the lifetime for ADP release from a singly occupied F1-ATPase. An internal consistency test is given by comparing 2 independent ways of obtaining the relaxation time of the probe. They agree and are ∼15 μs.
Behavioural evidence for segments as subordinate units in Chinese spoken word production: The form-preparation paradigm revisited

It is widely acknowledged that phonemic segments are primary phonological units, processed serially, in spoken word production of Germanic languages. However, evidence for a behavioural effect of single-segment overlap on Chinese spoken word production is lacking. The current study adopted the form-preparation paradigm to investigate the effects of segment predictability and segment repetition separately, which were mixed in previous studies. Native Mandarin Chinese speakers named pictures in the following conditions: predictable, unpredictable, and no segment repetition. Different positions in words (i.e., the onset and the rhyme) were examined at the same time. Results revealed a facilitation effect of onset predictability masked by an inhibition tendency of onset repetition, indicating Chinese speakers’ ability to prepare the predictable onset. In contrast, rhyme predictability showed a non-significant effect. This pattern of results did not change no matter whether the conditions of unpredictable onset repetition and unpredictable rhyme repetition were mixed in the same context (Experiment 1) or extracted from different blocked contexts (Experiment 2). The finding provides essential support to the claim that phonemic segments are functionally engaged in Chinese spoken word production, and thus adds original evidence to the universal aspect of spoken word production.
Multimodal Speaker Diarization Using a Pre-Trained Audio-Visual Synchronization Model

Speaker diarization systems aim to find ‘who spoke when? ’ in multi-speaker recordings. The dataset usually consists of meetings, TV/talk shows, telephone and multi-party interaction recordings. In this paper, we propose a novel multimodal speaker diarization technique, which finds the active speaker through audio-visual synchronization model for diarization. A pre-trained audio-visual synchronization model is used to find the synchronization between a visible person and the respective audio. For that purpose, short video segments comprised of face-only regions are acquired using a face detection technique and are then fed to the pre-trained model. This model is a two streamed network which matches audio frames with their respective visual input segments. On the basis of high confidence video segments inferred by the model, the respective audio frames are used to train Gaussian mixture model (GMM)-based clusters. This method helps in generating speaker specific clusters with high probability. We tested our approach on a popular subset of AMI meeting corpus consisting of 5.4 h of recordings for audio and 5.8 h of different set of multimodal recordings. A significant improvement is noticed with the proposed method in term of DER when compared to conventional and fully supervised audio based speaker diarization. The results of the proposed technique are very close to the complex state-of-the art multimodal diarization which shows significance of such simple yet effective technique.
Illness perceptions among patients with type 2 diabetes mellitus: A cross-sectional study.

AIMS This study aimed to investigate illness perceptions and their predictors among Chinese patients with type 2 diabetes. METHODS A descriptive, correlational, and exploratory design was used. The Chinese version of the Revised Illness Perception Questionnaire was modified and used to collect data between September 2016 and February 2017. RESULTS On average, patients recognized fewer than five of the 14 common symptoms of type 2 diabetes. Of the six causal factors, "dietary behaviours" had the highest mean score, while "psychological factors" had the lowest score. Most patients lacked understanding of type 2 diabetes mellitus. They perceived it as a chronic and stable illness, without negative affective response, and controllable by themselves and through treatment. Gender, age, marital status, educational level, family income, employment status, diabetes duration, diabetes-related complications, comorbid conditions, number of hospital admissions, and the level of haemoglobin A1c were predictors of illness perceptions. CONCLUSIONS The findings of the present study suggest that the illness perceptions of Chinese patients with type 2 diabetes should be improved. This evidence may enrich the theoretical understanding of illness perceptions and be used to develop interventions for enhancing illness perceptions in such patients.
Risk factors for the carriage of Streptococcus infantarius subspecies infantarius isolated from African fermented dairy products

Streptococcus infantarius subsp. infantarius (Sii) has been identified as predominant lactic acid bacteria in spontaneously fermented dairy products (FDPs) in sub-Saharan Africa including Côte d'Ivoire. However, Sii belongs to the Streptococcus bovis/Streptococcus equinus complex (SBSEC). Most SBSEC members are assumed to be involved as opportunistic pathogens in serious diseases in both humans and animals. A population-based cross-sectional survey, including 385 participants was conducted in Korhogo, northern Côte d'Ivoire, to identify risk factors for Sii fecal carriage, including consumption of local FDPs. A structured questionnaire was used to gather participant's socio-demographic and economic characteristics, their relation to livestock and dietary habits. In addition, fresh stool and milk samples were collected. The identification of Sii was done using a SBSEC-specific PCR assay targeting 16S rRNA and groEL genes. The overall prevalence of SBSEC and Sii carriage was 23.2% (confidence interval CI 95% = 18.9–27.5) and 12.0% (CI 95% = 8.4–15.5) for stool, respectively. Prevalence of Sii was significantly higher in consumers of artisanal butter compared with non-consumers (57.1% vs 10.1%, odds ratio OR: 11.9, 95% CI: 3.9–36.6), as well as in persons handling livestock (OR = 3.9; 95% CI = 1.6–9.3) and livestock primary products (OR = 5.7; 95% CI = 2.3–14.3). The closer contact with livestock was a risk factor for Sii fecal carriage. Sii strains were isolated from fresh and fermented milk products with a prevalence of 30.4% and 45.4%, respectively. Analysis of Sii population structure through the SBSEC multi locus sequence typing assay revealed a close relationship across human and dairy isolates, possibly linked to a Kenyan human isolate. All these outcomes underline the interest of in-depth investigations on the ecology, potential reservoirs and pathways of contamination by Sii at the human-animal-environment interface in comparison to yet to be collected data from Europe, Asia and the Americas to further elucidate the various roles of Sii.
Proximal Femoral Osteotomies in the Adolescence: Indications and Treatment Strategies Proximale Femurosteotomien im Wachstumsalter: Wann indiziert? Wie operieren?

Abstract Proximal femoral osteotomies are common surgical interventions to treat hip deformities in pediatric orthopedics. The aim of proximal femoral osteotomies is to optimise hip containment by using varus or valgus osteotomy, flexion or extension osteotomy with shortening, lengthening or derotation of the femoral neck. Furthermore improved muscular dysbalance by enhancing the femoral offset, extension of the range of motion and pain reduction are important surgical intentions. In the long term, a proximal femoral osteotomy is meant to minimize the probability of an early osteoarthritis of the hip. In the current literature many different types of proximal femoral osteotomies are described. They can be divided concerning their anatomical localization into subcapital, base of the femoral neck, intertrochanteric and subtrochanteric osteotomies. A profound knowledge about the deformity and the anatomical situation is essential to choose the appropriate osteotomy. The aim of this review is to show the different ways of proximal femoral osteotomies and their indications after having done a selective literature research. Furthermore over the last years the osteosynthesis materials have changed from blade plates (non-locking) to locking compression plates which allow an early re-mobilization without hip spica casts. Zusammenfassung Proximale Femurosteotomien sind in der Kinderorthopädie ein häufiger Eingriff zur Korrektur hüftgelenksnaher Deformitäten. Ziel der proximalen Femurosteotomien ist i. d. R. die Optimierung des Containments der Hüfte durch Varisierung oder Valgisierung, Extension oder Flexion mit ggf. begleitender Verkürzung, Verlängerung oder Derotation. Weitere operative Ziele sind die Verbesserung einer möglichen muskulären Dysbalance durch Optimierung des femoralen Offsets, Erweiterung des Bewegungsumfangs und Schmerzreduktion. Langfristig gilt es, durch die proximale Femurosteotomie den Progress einer frühzeitigen Koxarthrose zu minimieren. In der Literatur ist die Bandbreite der beschriebenen proximalen Femurosteotomien groß. Grob lassen sie sich anhand ihrer anatomischen Lokalisation in subkapital, basozervikal, intertrochantär und subtrochantär unterteilen. Zur richtigen Wahl des operativen Verfahrens ist ein profundes Wissen über die Genese der Erkrankung und Indikationsstellung notwendig. Ziel der vorliegenden Literaturübersicht ist es, anhand einer selektiven Literaturrecherche die unterschiedlichen Osteotomieverfahren am proximalen Femur sowie ihre Indikationen darzustellen. Zusätzlich zeigt sich in den letzten Jahren ein Wechsel hinsichtlich des verwendeten Osteosyntheseverfahrens hin zu winkelstabilen Implantaten. Aufgrund der Winkelstabilität entfällt i. d. R. die postoperative Ruhigstellung im Becken-Bein-Gips und erleichtert somit dem jungen Patienten eine zügige Remobilisation.
Canine lymphoma: a retrospective study (2009-2010)

This study reviews the medical records of 56 dogs diagnosed with lymphoma based on the cytological and/or histological results between January 1, 2009 and December 31, 2010. Most of the dogs were middle-aged to old, and were diagnosed with multicentric lymphoma (ML) (n=36). The majority of the dogs were presented in stages III to V (n=55) and substage b (n=43). A complete blood count and serum biochemistry, urinalysis, serum protein electrophoresis, thoracic radiographs and/or abdominal ultrasound were performed. The results correlated with previously described results in the literature. Therapy was initiated in 80% of the dogs (n=45). After diagnosis, the median survival time of 62% of these dogs (n=28) treated with only prednisolone was 32 days (range 3 - 224 days). For 24% of the dogs (n=11) treated with chemotherapy, the median survival time was 119 days (range 11 - 273 days). Surgical resection of the macroscopic tumor was performed in the remaining six dogs (13%). Three of these dogs received subsequent prednisolone therapy. The median survival time of these six dogs was 47 days (range 0 - 669 days). The dogs that received chemotherapy had significantly longer survival times than those treated with only prednisolone, although negative prognostic factors were present in all of the cases treated with chemotherapy.
Preclinical Model of Perianal Fistulizing Crohn's Disease.

BACKGROUND Fistulizing anoperineal lesions (FAPLs) are common and severe complications of Crohn's disease (CD), exposing patients to the risk of anal sphincter alteration and permanent stoma. Due to the limited efficacy of current treatments, identifying new local therapies is mandatory. However, testing new treatments is currently limited because no relevant preclinical model of Crohn's-like FAPL is available. Thus, a reliable and reproducible experimental model of FAPLs is needed to assess new therapeutic strategies. METHODS Twenty-one rats received a rectal enema of 2,4,6-trinitrobenzensulfonic acid (TNBS) to induce proctitis. Seven days later, a transsphincteric fistula tract was created with a surgical thread, instilled with TNBS twice a week until its removal at day 7 (group 1), day 14 (group 2), or day 28 (group 3). In each rat, pelvic MRI was performed just before and 7 days after thread removal. Rats were sacrificed 7 days after thread removal for pathological assessment of the fistula tract. RESULTS The optimal preclinical model was obtained in group 3. In this group, 7 days after thread removal, all animals (9 of 9) had a persistent fistula tract visible on MRI with T2-hypersignal (normalized T2 signal intensity: 2.36 ± 0.39 arbitrary units [a.u.] [2.08-2.81]) and elevation of the apparent diffusion coefficient (1.33 ± 0.16 10-3 millimeter squared per seconds [1.18-1.49]). The pathological examination of the fistula tract revealed acute and chronic inflammation, granulations, fibrosis, epithelialization, and proctitis in the adjacent rectum. CONCLUSIONS This reproducible preclinical model could be used to assess the effectiveness of innovative treatments in perianal fistulizing CD.
In vitro assessment of inter-kingdom biofilm formation by bacteria and filamentous fungi isolated from a drinking water distribution system

Abstract The main focus so far in the study of biofilm formation in drinking water has been bacteria. Studies on biofilm formation involving filamentous fungi are, therefore, scarce. This study aimed to assess and characterize the ability of these microorganisms to interact with bacteria whilst forming inter-kingdom biofilms. Biofilms were analysed in terms of total biomass, metabolic activity, bacterial colony forming units and morphology by epifluorescence microscopy. The quantitative methods revealed that biofilm mass increased over time for both single and inter-kingdom biofilms, while specific metabolic activity decreased, in general, along the time points evaluated. Microscopic data visually confirmed the biofilm mass increase over time. This study shows that fungal stage development is important in the first 24 h of biofilm formation. Inter-kingdom biofilm formation is microorganism dependent and inter-kingdom biofilms may provide an advantage to the opportunistic bacterium Acinetobacter calcoaceticus to replicate and proliferate when compared with Methylobacterium oryzae.
MCP-1 mediates ischemia/reperfusion-induced cardiomyocyte apoptosis via MCPIP1 and CaSR.

BACKGROUND Monocyte chemotactic protein-1 (MCP-1) plays a crucial role in ischemia/reperfusion (I/R) injury; however, the detailed mechanism of MCP-1 in I/R injury-induced cardiomyocyte apoptosis remains unclear. In this study, we explored the cascade downstream of I/R-induced MCP-1 that modulates cell apoptosis and determined whether calcium-sensing receptors (CaSRs) are involved in the process. METHODS Protein levels were detected in a cardiac muscle cell line (HL-1) and primary cultured neonatal mouse ventricular cardiomyocytes using Western blotting and immunocytochemistry. Released MCP-1 was detected using ELISA. Both Hoechst staining and flow cytometry methods were used to measure cell apoptosis. Specific pharmacological inhibitors of CCR2 (RS102895) and CaSR (NPS2143) as well as a CaSR activator (Evocalcet) were applied to confirm the roles of these factors in I/R-induced cell apoptosis. RESULTS I/R inhibited cell viability and upregulated cell apoptosis. Moreover, I/R induced the release of MCP-1 from both HL-1 cells and primary cardiomyocytes. Further research confirmed that CaSR acted as an upstream effector of monocyte chemotactic protein-1-induced protein-1 (MCPIP1) and coordinately regulated cell apoptosis, which was verified by addition of an inhibitor or activator of CaSR. Moreover, MCPIP1 induced cell apoptosis through endoplasmic reticulum (ER) stress but not autophagy induced by I/R. CONCLUSIONS Based on these findings, I/R-induced MCP-1 release regulates cardiomyocyte apoptosis via the MCPIP1 and CaSR pathways, suggesting a new therapeutic strategy for I/R injury.
Co-Adsorption of H2O, OH, and Cl on Aluminum and Intermetallic Surfaces and Its Effects on the Work Function Studied by DFT Calculations

The energetics of adsorption of H2O layers and H2O layers partially replaced with OH or Cl on an Al(111) surface and on selected surfaces of intermetallic phases, Mg2Si and Al2Cu, was studied by first-principle calculations using the density function theory (DFT). The results show that H2O molecules tended to bind to all investigated surfaces with an adsorption energy in a relatively narrow range, between –0.8 eV and –0.5 eV, at increased water coverage. This can be explained by the dominant role of networks of hydrogen bonds at higher H2O coverage. On the basis of the work function, the calculated Volta potential data suggest that both intermetallic phases became less noble than Al(111); also, the Volta potential difference was larger than 1 V when the coverage of the Cl-containing ad-layer reached one monolayer. The energetics of H2O dissociation and substitution by Cl as well as the corresponding work function of each surface were also calculated. The increase in the work function of the Al(111) surface was attributed to the oxidation effect during H2O adsorption, whereas the decrease of the work function for the Mg2Si(111)–Si surface upon H2O adsorption was explained by atomic and electronic rearrangements in the presence of H2O and Cl.
Additional evidence that the rat renal interstitium contracts in vivo

We recently provided highly suggestive preliminary evidence that the renal interstitium contracts reactively in vivo. We demonstrated that renal medullary direct interstitial volume expansion (rmDIVE = 100 μl bolus infusion of 0.9% saline (SS)/30 s) brought about a biphasic renal interstitial hydrostatic pressure (RIHP) response which was abolished when dibutyryl-cAMP was concomitant and interstitially infused. To assess more deeply the feasibility of the concept that the renal interstitium contracts in vivo, two experimental series (S1, S2) were performed in hydropenic rats subjected to acute left renal-denervation, hormonal clamping, and control of renal arterial pressure. In S1, RIHP and renal outer medullary blood flow (RoMBF) were continuously measured before and after a sudden micro-bolus (5μl) injection, into the renal medullary interstitium, of SS containing α-trinositol (α-TNS, anti-inflammatory drug) to either two doses 2 or 4 mM (SS + 2 α-TNS and SS + 4 α-TNS groups). No overall differences between groups in either ΔRIHP or %ΔRoMBF time courses were found; however, in the SS + 2 α-TNS group the data were less scattered and the ΔRIHP time course tended to peak faster and then persisted there, so that, this α-TNS dose was selected for S2. In S2, RIHP and RoMBF were similarly measured in rats randomly assigned to three groups: the CTR group (sham time-control), SS group (SS alone), and SS + α-TNS group. The micro-bolus injection of SS alone (SS group) was unable to increase ΔRIHP. The group with no micro-bolus injection (CTR group) experienced a decrease in ΔRIHP. The micro-bolus injection of SS + 2 α-TNS was accompanied by a differential increase in ΔRIHP (vs. CTR and SS groups). These responses were not associated with differential changes among groups in %ΔRoMBF or hemodilution parameters. These results provide additional evidence that the renal interstitium contracts in vivo.
Positive Communication and Partner Appraisals Among Mothers and Their Long-Term Male Partners: Impact on Sexual and Relationship Satisfaction

Abstract Parents in the USA struggle to maintain their sexual and relational health over time. The current study aimed to investigate the impact of positive communication and partner appraisals on sexual and relationship satisfaction in a sample of 93 mixed sex couples (N = 186) with children living in the home on a full-time basis. Results indicated that for men and women, positive communication scores predicted higher levels of sexual and relationship satisfaction and more positive partner appraisals predicted higher levels of relationship satisfaction. Significant results were also found at the couple-level. Findings have clinical and educational implications for parents.