Miracle-dz/UniFAR-FTUs huggingface dataset:
Monitoring maternal near miss/severe maternal morbidity: A systematic review of global practices

There is international interest in monitoring severe events in the obstetrical population, commonly referred to as maternal near miss or severe maternal morbidity. These events can have significant consequences for individuals in this population and further study can inform practices to reduce both maternal morbidity and mortality. Numerous surveillance systems exist but we lack a standardized approach. Given the current inconsistencies and the importance in monitoring these events, this study aimed to identify and compare commonly used surveillance methods. In June 2018, we systematically searched MEDLINE, EMBASE, and CINAHL using terms related to monitoring/surveillance and maternal near miss/severe maternal morbidity. We included papers that used at least three indicators to monitor for these events and collected data on specific surveillance methods. We calculated the rate of maternal near miss/severe maternal morbidity in hospitalization data obtained from the 2016 US National Inpatient Sample using five common surveillance methods. Of 18,832 abstracts, 178 papers were included in our review. 198 indicators were used in studies included in our review; 71.2% (n = 141) of these were used in <10% of included studies and only 6.1% (n = 12) were used in >50% of studies included in our review. Eclampsia was the only indicator that was assessed in >80% of included studies. The rate of these events in American hospitalization data varied depending on the criteria used, ranging from 5.07% (95% CI = 5.02, 5.11) with the Centers for Disease Control criteria and 7.85% (95% CI = 7.79, 7.91) using the Canadian Perinatal Surveillance System. Our review highlights inconsistencies in monitoring practices within and between developed and developing countries. Given the wide variation in monitoring approaches observed and the likely contributing factors for these differences, it may be more feasible for clinical and academic efforts to focus on standardizing approaches in developed and developing countries independently at this time. PROSPERO Registration: CRD42018096858.
Mg2+ is a Missing Link in Plant Cell Ca2+ Signalling and Homeostasis—A Study on Vicia faba Guard Cells

Hyperpolarization-activated calcium channels (HACCs) are found in the plasma membrane and tonoplast of many plant cell types, where they have an important role in Ca2+-dependent signalling. The unusual gating properties of HACCs in plants, i.e., activation by membrane hyperpolarization rather than depolarization, dictates that HACCs are normally open in the physiological hyperpolarized resting membrane potential state (the so-called pump or P-state); thus, if not regulated, they would continuously leak Ca2+ into cells. HACCs are permeable to Ca2+, Ba2+, and Mg2+; activated by H2O2 and the plant hormone abscisic acid (ABA); and their activity in guard cells is greatly reduced by increasing amounts of free cytosolic Ca2+ ([Ca2+]Cyt), and hence closes during [Ca2+]Cyt surges. Here, we demonstrate that the presence of the commonly used Mg-ATP inside the guard cell greatly reduces HACC activity, especially at voltages ≤ −200 mV, and that Mg2+ causes this block. Therefore, we firstly conclude that physiological cytosolic Mg2+ levels affect HACC gating and that channel opening requires either high negative voltages (≥−200 mV) or displacement of Mg2+ away from the immediate vicinity of the channel. Secondly, based on structural comparisons with a Mg2+-sensitive animal inward-rectifying K+ channel, we propose that the likely candidate HACCs described here are cyclic nucleotide gated channels (CNGCs), many of which also contain a conserved diacidic Mg2+ binding motif within their pores. This conclusion is consistent with the electrophysiological data. Finally, we propose that Mg2+, much like in animal cells, is an important component in Ca2+ signalling and homeostasis in plants.
Multifrequency target strength of northern krill (Meganyctiphanes norvegica) swimming horizontally

Multifrequency acoustic measurements on ex situ horizontally swimming krill were made in a novel experimental setting. An ensemble of northern krill (Meganyctiphanes norvegica) was introduced to a large enclosure (a mesocosm), and acoustic backscatter was sampled using a multifrequency (70, 120, and 200 kHz) echosounder (Simrad EK60). Two submerged lamps were placed at opposite sides of the mesocosm and switched on and off to induce the krill, by light attraction, to swim horizontally through the acoustic beams. By tracking echoes, animal displacement, swimming speed, and target strength (TS) by frequency were estimated. The dominant and secondary modes of the total-length distribution were 21.8+ 3.0 and 27.8+ 2.7 mm, respectively. Although krill orientation was assumed stable and the ping rate was high, the range and inter-ping variability of the average TS values were large, decreasing and increasing with frequency, respectively. The overall TS frequency response observed and concurrent measurements at 120 and 200 kHz confirm the theoretical expectation that the acoustic backscatter from the investigated organisms were confined to the Rayleigh and Geometric scattering regions, a finding that might both aid acoustic identification and size-group separation of in situ northern krill.
Fractal Analyses of Animal Movement: A Critique

Several recent papers developed and applied a novel approach for the analysis of animal movement paths, based on calculating the paths' fractal dimensions. The estimated fractal dimension is used to describe the pattern of the interaction between animal movement and landscape heterogeneity, and possibly to extrapolate movement patterns of organisms across spatial scales. Here, I critically examine the key assumption of the fractal approach: that the estimated fractal dimension is constant over some biologically relevant range of spatial scales. Use of a correlated random walk as a null hypothesis for movement suggests that the fractal dimension should grade smoothly from near 1 at very small spatial scales to near 2 at very large spatial scales. Several empirical data sets exhibit a qualitative pattern in agreement with this prediction. I conclude that ecologists should avoid calculating and using the fractal dimension of movement paths, unless self—similarity (a constant fractal dimension) for some range of spatial scales is demonstrated. An alternative approach employing random—walk models provides a more powerful framework for translating individual movements in heterogeneous space into spatial dynamics of populations.
Primate population studies at Polonnaruwa. II. Heritability of body measurements in a natural population of toque macaques (Macaca sinica)

The heritability of quantitative traits, or the proportion of phenotypic variation due to additive genetic or heritable effects, plays an important role in determining the evolutionary response to natural selection. Most quantitative genetic studies are performed in the laboratory, due to difficulty in obtaining genealogical data in natural populations. Genealogies are known, however, from a unique 20‐year study of toque macaques (Macaca sinica) at Polonnaruwa, Sri Lanka. Heritability in this natural population was, therefore, estimated.
UvrC Coordinates an O2-Sensitive [4Fe4S] Cofactor.

Recent advances have led to numerous landmark discoveries of [4Fe4S] clusters coordinated by essential enzymes in repair, replication, and transcription across all domains of life. The cofactor has notably been challenging to observe for many nucleic acid processing enzymes due to several factors, including a weak bioinformatic signature of the coordinating cysteines and lability of the metal cofactor. To overcome these challenges, we have used sequence alignments, an anaerobic purification method, iron quantification, and UV-Visible and electron paramagnetic resonance spectroscopies to demonstrate that, UvrC, the dual-incision endonuclease in the bacterial nucleotide excision repair (NER) pathway, coordinates a [4Fe4S] cluster with 60-70% cofactor incorporation. Spectroscopically, we also show that, bound to UvrC, the [4Fe4S] cofactor is susceptible to oxidative degradation with aggregation of apo species. Importantly, in its holo form with the cofactor bound, UvrC forms high affinity complexes with duplexed DNA substrates; the apparent dissociation constants to well-matched and damaged duplex substrates are 100 ± 20 nM and 80 ± 30 nM, respectively. This high affinity DNA binding contrasts reports made for isolated protein lacking the cofactor. Moreover, using DNA electrochemistry, we find that the cluster coordinated by UvrC is redox-active and participates in DNA-mediated charge transport chemistry with DNA-bound midpoint potential of 90 mV vs. NHE. This work highlights that the [4Fe4S] center is critical to UvrC.
The effect of intercropping Lablab purpureus L. with sorghum on yield and chemical composition of fodder

In two years the growth and composition of mixtures of sorghum with Lablab purpureus as strips, paired rows and alternate rows were compared with those of sorghum and lablab monocrops. In the first year, when sowing did not occur until 7 August, the sorghum yields were low in the monocrop and even less in the mixed crops. Lablab yield was also reduced in mixtures compared with the monocrop, but total forage yield was greater for the mixed crops compared with sorghum alone. Of the mixed cropping systems, a reduction in the yield of lablab plants and in the phosphorus and potassium content of shed lablab leaves in paired rows suggested that there was more competition for nutrients between lablab plants grown in this treatment. In the second year, earlier sowing increased sorghum growth at the expense of lablab yield in the mixed cropping systems, with the result that total forage yield was not increased when sorghum was intercropped with lablab. However, the crude protein content of sorghum stems and leaf yield were increased in mixed crops, particularly in paired and alternate rows rather than strips, demonstrating that close configuration of the legume and cereal are necessary for the cereal to obtain most benefit from nitrogen fixed by the legume. It is concluded that, when conditions are favourable for rapid sorghum and lablab growth, the sorghum will benefit more when it is grown in paired rows with lablab rather than in strips. However, the close spacing normally adopted for paired rows may encourage competition between lablab plants and increase the requirements for phosphorus and potassium fertilizer.
Effect of an Innovative Mattress and Cryotherapy on Sleep after an Elite Rugby Match

Supplemental digital content is available in the text. ABSTRACT Introduction This study aimed to explore the relationship between elite rugby union match and postmatch sleep architecture and to investigate the effects of a high-heat capacity mattress (MAT) and a whole-body cryotherapy (WBC) session on postmatch sleep architecture. Methods Nineteen elite male U23 rugby union players performed in three official matches, followed by three experimental conditions, in a randomized order: MAT, WBC, and no intervention (CONT). Match load was evaluated using GPS trackers and video analyses. Sleep architecture was assessed by polysomnography (PSG). Core body temperature (CBT) and mattress surface temperature were monitored during sleep. Linear mixed-effects models were conducted to assess the effects of each experimental condition on sleep, with match load variables as covariates. Results A lower wake after sleep onset (β = −10.5 min, P < 0.01) and higher rapid eye movement sleep proportion (β = +2.8%, P < 0.05) were reported for MAT compared with CONT. Moreover, lower mean CBT (β = −0.135°C, P < 0.001) and mean mattress surface temperature (β = −2.736°C, P < 0.001) during sleep were observed for MAT compared CONT. WBC did not affect nocturnal CBT nor interfere with sleep architecture. For every 100-m increase in high-speed running distance, a higher slow wave sleep (β = +1.1%, P = 0.05) and lower light sleep proportion (β = −1.2%, P < 0.05) proportion were observed. Conversely, for every 10 supplementary collisions, lower slow wave sleep (β = −1.9, P = 0.09) and higher light sleep (β = +2.9%, P < 0.001) proportion were observed. Conclusion MAT use had a positive effect on sleep architecture after an elite rugby union match, potentially through a more efficient nocturnal heat transfer.
Variation in Infections of Myxobolus cerebralis in Field-Exposed Cutthroat and Rainbow Trout in Idaho

Abstract We evaluated the severity and extent of infection by Myxobolus cerebralis in replicated groups of same-age Yellowstone cutthroat trout Oncorhynchus clarki bouvieri and Kamloops rainbow trout O. mykiss exposed to natural river conditions at four sites along a 25-km reach of the South Fork of the Boise River. Groups of fry were each exposed for 10 d in June, July, or August and then removed from the river and reared in specific-pathogen-free water under controlled laboratory conditions for 84 d. At the end of the study, surviving fish were examined for clinical signs of disease, and fish heads were evaluated by histology for the presence of characteristic pathology and then scored for the extent of pathology on a five-point scale. The mean histological scores and percent of fish testing positive in both species were similar within each site but varied across the study sites from no infection in fish at the uppermost site to 90–100% testing positive at the lowermost site. Cutthroat trout with modera.
Antimicrobial Resistance in Humans and Animals: Rapid Review of Psychological and Behavioral Determinants

A rapid review of current evidence examining psychological issues regarding the use of antibiotics and antimicrobials and resistance to these in both human and animal populations was conducted. Specific areas of interest were studies examining psychological determinants of AMR and interventions which attempt to change behavior with regard to AMR in the general population; animals; and fish, in particular. Although there is some evidence of the effectiveness of behavior change in general human populations, there is limited evidence in farmed animals, with a particular dearth in fish farming. We conclude there is an urgent need for more psychological research to identify major barriers and facilitators to change and evaluate the effectiveness of theory-based interventions aimed at reducing AM use in food production animals, including the promotion of alternatives to AMs, such as vaccination.
Multi-population genetic algorithm with ER network for solving flexible job shop scheduling problems

A genetic algorithm (GA) cannot always avoid premature convergence, and multi-population is usually used to overcome this limitation by dividing the population into several sub-populations (sub-population number) with the same number of individuals (sub-population size). In previous research, the questions of how a network structure composed of sub-populations affects the propagation rate of advantageous genes among sub-populations and how it affects the performance of GA have always been ignored. Therefore, we first propose a multi-population GA with an ER network (MPGA-ER). Then, by using the flexible job shop scheduling problem (FJSP) as an example and considering the total individual number (TIN), we study how the sub-population number and size and the propagation rate of advantageous genes affect the performance of MPGA-ER, wherein the performance is evaluated by the average optimal value and success rate based on TIN. The simulation results indicate the following regarding the performance of MPGA-ER: (i) performance shows considerable improvement compared with that of traditional GA; (ii) for an increase in the sub-population number for a certain TIN, the performance first increases slowly, and then decreases rapidly; (iii) for an increase in the sub-population size for a certain TIN, the performance of MPGA-ER first increases rapidly and then tends to remain stable; and (iv) with an increase in the propagation rate of advantageous genes, the performance first increases rapidly and then decreases slowly. Finally, we use a parameter-optimized MPGA-ER to solve for more FJSP instances and demonstrate its effectiveness by comparing it with that of other algorithms proposed in other studies.
Establishment of a CALU, AURKA, and MCM2 gene panel for discrimination of metastasis from primary colon and lung cancers

Metastasis is known as a key step in cancer recurrence and could be stimulated by multiple factors. Calumenin (CALU) is one of these factors which has a direct impact on cancer metastasis and yet, its underlined mechanisms have not been completely elucidated. The current study was aimed to identify CALU co-expressed genes, their signaling pathways, and expression status within the human cancers. To this point, CALU associated genes were visualized using the Cytoscape plugin BisoGenet and annotated with the Enrichr web-based application. The list of CALU related diseases was retrieved using the DisGenNet, and cancer datasets were downloaded from The Cancer Genome Atlas (TCGA) and analyzed with the Cufflink software. ROC curve analysis was used to estimate the diagnostic accuracy of DEGs in each cancer, and the Kaplan–Meier survival analysis was performed to plot the overall survival of patients. The protein level of the signature biomarkers was measured in 40 biopsy specimens and matched adjacent normal tissues collected from CRC and lung cancer patients. Analysis of CALU co-expressed genes network in TCGA datasets indicated that the network is markedly altered in human colon (COAD) and lung (LUAD) cancers. Diagnostic accuracy estimation of differentially expressed genes showed that a gene panel consisted of CALU, AURKA, and MCM2 was able to successfully distinguish cancer tumors from healthy samples. Cancer cases with abnormal expression of the signature genes had a significantly lower survival rate than other patients. Additionally, comparison of CALU, AURKA, and MCM2 proteins between healthy samples, early and advanced tumors showed that the level of these proteins was increased through normal–carcinoma transition in both types of cancers. These data indicate that the interactions between CALU, AURKA, and MCM2 has a pivotal role in cancer development, and thereby needs to be explored in the future.
Neuroendocrinology of sex-role reversal.

Females of some species are considered sex-role reversed, meaning that they face stronger competition for mates compared to males. While much attention has been paid to behavioral and morphological patterns associated with sex-role reversal, less is known about its physiological regulation. Here, we evaluate hypotheses relating to the neuroendocrine basis of sex-role reversal. We refute the most widely tested activational hypothesis for sex differences in androgen secretion; sex-role reversed females do not have higher levels of androgens in circulation than males. However, we find some evidence that the effects of androgens may be sex-specific; circulating androgen levels correlate with some competitive phenotypes in sex-role reversed females. We also review evidence that sex-role reversed females have higher tissue-specific sensitivity to androgens than males, at least in some species and tissues. Organizational effects may explain these relationships, considering that early exposure to sex steroids can shape later sensitivity to hormones, often in sex-specific ways. Moving forward, experimental and correlative studies on the ontogeny and expression of sex-role reversal will further clarify the mechanisms that generate sex-specific behaviors and sex roles.
Overview of Mitochondrial E3 Ubiquitin Ligase MITOL/MARCH5 from Molecular Mechanisms to Diseases

The molecular pathology of diseases seen from the mitochondrial axis has become more complex with the progression of research. A variety of factors, including the failure of mitochondrial dynamics and quality control, have made it extremely difficult to narrow down drug discovery targets. We have identified MITOL (mitochondrial ubiquitin ligase: also known as MARCH5) localized on the mitochondrial outer membrane and previously reported that it is an important regulator of mitochondrial dynamics and mitochondrial quality control. In this review, we describe the pathological aspects of MITOL revealed through functional analysis and its potential as a drug discovery target.
Manipulation of host behaviour by parasites: ecosystem engineering in the intertidal zone?

Understanding the influence of parasites on the community ecology of free–living organisms is an emerging theme in ecology. The cockle Austrovenus stutchburyi is an abundant mollusc inhabiting the sheltered shores of New Zealand. This species, which lives just few centimetres under the surface, plays a key role for many benthic invertebrate species, because in these habitats the cockle shell is the only available hard surface where invertebrates can establish. However, the behaviour of this cockle can be altered locally by a parasite, the trematode Curtuteria australis. Indeed, heavily infected cockles are unable to bury perfectly and typically lie entirely exposed at the surface of the mud. In this study, we investigated the ecological consequences of this behavioural alteration for two invertebrates species commonly associated with cockles, the anemone Anthopleura aureoradiata and the limpet Notoacmea helmsi. A field study first demonstrated that in both infected and non–infected populations of cockles, there was a negative relationship between the number of anemones and limpets found on cockles. In the laboratory, we showed that predation of limpets by anemones is possible when they share the same cockle shell. In a heavily infected population of cockles, limpets were significantly more frequent and more abundant on cockles manipulated by C. australis than on cockles with a normal behaviour. A colonization test conducted in natural conditions demonstrated that the predominance of limpets on manipulated cockles results from a direct habitat preference. Conversely, anemones were significantly less frequent and less abundant on manipulated cockles than on cockles manipulated by C. australis. A desiccation test revealed that, relative to limpets, they had a lower resistance to this physical stress. We discuss our results in relation to current ideas on ecosystem engineering by organisms.