Miracle-dz/UniFAR-FTUs huggingface dataset:
CFTR Modulators Rescue the Activity of CFTR in Colonoids Expressing the Complex Allele p.[R74W;V201M;D1270N]/dele22_24

An Italian, 46-year-old female patient carrying the complex allele p.[R74W;V201M;D1270N] in trans with CFTR dele22_24 was diagnosed at the Cystic Fibrosis (CF) Center of Verona as being affected by CF-pancreatic sufficient (CF-PS) in 2021. The variant V201M has unknown significance, while both of the other variants of this complex allele have variable clinical consequences, according to the CFTR2 database, with reported clinical benefits for treatment with ivacaftor + tezacaftor and ivacaftor + tezacaftor + elexacaftor in patients carrying the R74W-D1270N complex allele, which are currently approved (in USA, not yet in Italy). She was previously followed up by pneumologists in northern Italy because of frequent bronchitis, hemoptysis, recurrent rhinitis, Pseudomonas aeruginosa lung colonization, bronchiectasis/atelectasis, bronchial arterial embolization and moderately compromised lung function (FEV1: 62%). Following a sweat test with borderline results, she was referred to the Verona CF Center where she presented abnormal values in both optical beta-adrenergic sweat tests and intestinal current measurement (ICM). These results were consistent with a diagnosis of CF. CFTR function analyses were also performed in vitro by forskolin-induced swelling (FIS) assay and short-circuit currents (Isc) in the monolayers of the rectal organoids. Both of these assays showed significantly increased CFTR activity following treatment with the CFTR modulators. Western-blot analysis revealed increased fully glycosylated CFTR protein after treatment with correctors, in line with the functional analysis. Interestingly, tezacaftor, together with elexacaftor, rescued the total organoid area under steady-state conditions, even in the absence of the CFTR agonist forskolin. In conclusion, in ex vivo and in vitro assays, we measured a residual function that was significantly enhanced by in vitro incubation with CFTR modulators, especially by ivacaftor + tezacaftor + elexacaftor, suggesting this combination as a potentially optimal treatment for this case.
Theory of the vortex breakdown phenomenon

The phenomenon examined is the abrupt structural change which can occur at some station along the axis of a swirling flow, notably the leading-edge vortex formed above a delta wing at incidence. Contrary to previous attempts at an explanation, the belief demonstrated herein is that vortex breakdown is not a manifestation of instability or of any other effect indicated by study of infinitesimal disturbances alone. It is instead a finite transition between two dynamically conjugate states of axisymmetric flow, analogous to the hydraulic jump in openchannel flow. A set of properties essential to such a transition, corresponding to a set shown to provide a complete explanation for the hydraulic jump, is demonstrated with wide generality for axisymmetric vortex flows; and the interpretation covers both the case of mild transitions, where an undular structure is developed without the need arising for significant energy dissipation, and the case of strong ones where a region of vigorous turbulence is generated. An important part of the theory depends on the calculus of variations; and the comprehensiveness with which certain properties of conjugate flow pairs are demonstrable by this analytical means suggests that present ideas may be useful in various other problems.
Genetic features and phylogenetic relationship analyses of Guizhou Han population residing in Southwest China via 38 X-InDels

Background The insertion/deletion polymorphism (InDel), an ideal forensic genetic marker with a low spontaneous mutation rate and small amplification product fragments, is widely distributed in the genome, combining the advantages of STR and SNP genetic markers. The X-chromosome has high application value in complex paternity testing, and it is an excellent system for evaluating population admixture and studying evolutionary anthropology. However, further research is needed on the population genetics of X-chromosome InDels (X-InDels). Methods In this article, a system composed of 38 X-InDel loci was utilized to analyse and evaluate the forensic parameters of the Guizhou Han population in order to explore its forensic application efficiency. Results The results showed that expected heterozygosities spanned from 0.0189 to 0.5715, and the cumulative power of discrimination of the 32 X-InDels and three linkage blocks was 0.9999999954 and 0.999999999999741 for males and females, respectively. The combined mean exclusion chance of these loci for trios and duos is 0.999999 and 0.999747, respectively. Multiple methods like principal component analysis, Fst genetic distance, and phylogenetic reconstruction were employed for dissecting the genetic structure of the Guizhou Han population by comparing it with previously reported populations. As expected, the studied Han population displayed relatively close genetic affinities with the East Asian populations. At the same time, there were obvious genetic differentiations between the Guizhou Han population and other continental populations that were discerned, especially for the African populations. Conclusions This study further verified the applicability of 38 X-InDels for human personal identification and kinship analyses of Han Chinese, and also showed the application potential of X-InDels in population genetics.
Correlation between Imaging Markers Derived from PET/MRI and Invasive Acquired Biomarkers in Newly Diagnosed Breast Cancer

Simple Summary Histological and molecular breast cancer (BC) characteristics are highly important for individualized therapeutical strategies and personalized risk assessment. Despite the improvement of existing image-based staging examinations over the last years, especially the implementation of PET/MRI examinations at leading tumor centers, the invasive part of BC staging is unavoidable. However, the diagnostic potential of PET/MRI has not yet been fully explored. Thus, this study aimed to analyze possible correlations between PET/MRI imaging markers and invasive acquired biomarkers in newly diagnosed early BC to possibly spare invasive procedures for BC patients in the future. At a population of 169 women a correlation between glucose metabolism and estrogen-receptor and progesterone-receptor expression, Ki67, and tumor grading was shown, whereas no correlation regarding disseminated tumor cells (DTCs) could be found. Thus, [18F]FDG-PET/MRI may give a first impression of BC-receptor status and BC-tumor biology during initial staging by measuring glucose metabolism but cannot distinguish between DTC-positive/-negative patients and replace biopsy. Abstract Purpose: Evaluate the diagnostic potential of [18F]FDG-PET/MRI data compared with invasive acquired biomarkers in newly diagnosed early breast cancer (BC). Methods: Altogether 169 women with newly diagnosed BC were included. All underwent a breast- and whole-body [18F]FDG-PET/MRI for initial staging. A tumor-adapted volume of interest was placed in the primaries and defined bone regions on each standard uptake value (SUV)/apparent diffusion coefficient (ADC) dataset. Immunohistochemical markers, molecular subtype, tumor grading, and disseminated tumor cells (DTCs) of each patient were assessed after ultrasound-guided biopsy of the primaries and bone marrow (BM) aspiration. Correlation analysis and group comparisons were assessed. Results: A significant inverse correlation of estrogen-receptor (ER) expression and progesterone-receptor (PR) expression towards SUVmax was found (ER: r = 0.27, p < 0.01; PR: r = 0.19, p < 0.05). HER2-receptor expression showed no significant correlation towards SUV and ADC values. A significant positive correlation between Ki67 and SUVmax and SUVmean (r = 0.42 p < 0.01; r = 0.19 p < 0.05) was shown. Tumor grading significantly correlated with SUVmax and SUVmean (ρ = 0.36 and ρ = 0.39, both p’s < 0.01). There were no group differences between SUV/ADC values of DTC-positive/-negative patients. Conclusions: [18F]FDG-PET/MRI may give a first impression of BC-receptor status and BC-tumor biology during initial staging by measuring glucose metabolism but cannot distinguish between DTC-positive/-negative patients and replace biopsy.
A new algorithm for internal heat generation in nanofluid flow due to a stretching sheet in a porous medium

Purpose – The purpose of this paper is to study heat and mass transfer in copper-water and silver-water nanofluid flow over stretching sheet placed in saturated porous medium with internal heat generation or absorption. The authors further introduce a new algorithm for solving heat transfer problems in fluid mechanics. The model used for the nanofluid incorporates the nanoparticle volume fraction parameter and a consideration of the chemical reaction effects among other features. Design/methodology/approach – The partial differential equations for heat and mass transfer in copper-water and silver-water nanofluid flow over stretching sheet were transformed into a system of nonlinear ordinary differential equations. Exact solutions for the boundary layer equations were obtained in terms of a confluent hypergeometric series. A novel spectral relaxation method (SRM) is used to obtain numerical approximations of the governing differential equations. The exact solutions are used to test the convergence and accu.
Development of a method to image blood flow beneath the skull or tissue using ultrasonic speckle reflections

The interest of our study is the in-vivo transcranial visualization of blood flow without removal of the skull. The strong attenuation, scattering, and distortion by the skull bones (or other tissues) make it difficult to use currently existing methods. However, blood flow can still be detected by using the ultrasonic speckle reflections from the blood cells and platelets (or contrast agents) moving with the blood. The methodology specifically targets these random temporal changes, imaging the owing region and eliminating static components. This process analyzed over multiple exposures allows an image of the blood flow to be obtained, even with negative acoustic effects of the skull in play. Experimental results show this methodology is able to produce both 2D and 3D images of the owing region, and eliminates those regions of static acoustic sources as predicted. Images produced of the owing region are found to agree with the physical size of the vessel analogues, and also found to provide a qualitative measure on the amount of flow through the vessels.
Observation of two-gap superconductivity in SrFe1.85Co0.15As2 single crystals by scanning tunneling microscopy and spectroscopy

Superconducting properties of SrFe1.85Co0. 15As2 single crystals and their parent material, SrFe2As2, were investigated by scanning tunneling microscopy and spectroscopy (STM/S). In the parent material, we modeled surface conditions on the in situ cleaved single crystals, based on the observation of 2×1 stripe patterns and square-lattice patterns in the atomic-resolution topography images and with the help of local density of states measurements. In the STM/S studies on SrFe1.85Co0. 15As2, a robust superconducting gap (2Δlarge=17.3 meV) was observed in the conductance spectra measured along a line on the SrFe1.85Co0. 15As2 surface. Moreover, an additional small gap-like (2Δsmall=2.9 meV) structure was simultaneously observed. Our observation corroborates the two-gap structures in iron-based superconductors.
Impact of light illumination on the surface structure of two-dimensional Ruddlesden–Popper perovskite in the fabrication process

Two-dimensional Ruddlesden–Popper (2DRP) perovskites are promising owing to their excellent environmental stability and competitive efficiency. During the fabrication process, 2DRP perovskites were often unintentionally exposed to light in the laboratory. However, the influence of light illumination on the surface structure of 2DRP during fabrication is unclear. Herein, the photodegradation of 2DRP perovskite (phenethylammonium lead iodide, PEA2PbI4) is comprehensively investigated using x-ray photoelectron spectroscopy, scanning electron microscopy, atomic force microscopy, and photoluminescence spectroscopy. We observed that only high-energy light, including that from a blue laser, air mass 1.5G, and notably, the daily used fluorescent lamp (FL) in the laboratory, significantly degraded PEA2PbI4. However, the red laser and ultraviolet-filtered FL, which had low energies, did not cause photodegradation. From this systematic study, we can explain the discrepancies in the surface morphologies previously studied. For instance, randomly oriented nanorod or rough surface of PEA2PbI4 mostly stems from photodegradation. We observed that photodegradation occurred more strongly when the films were illuminated during annealing than when they were illuminated after all fabrication processes were completed. We suggest that this difference stems from the completeness of the structure and the photodegraded PbI2 passivation effect. Our study provides two key guidelines for the fabrication of PEA2PbI4 films. The daily-use FL in the laboratory must be avoided for high-quality samples, and dark conditions are highly recommended, at least during the annealing process.
In search of evidence for protostellar collapse - A systematic study of line formation in low-mass dense cores

Radiative transfer models of low-mass dense cores as depicted in two theoretical models of protostellar collapse, the Larson-Penston flow and the theory of Shu and coworkers based on the «inside-out collapse» model, are presented. In particular, line profiles of the first three rotational transitions of the CS molecule are calculated for hypothetical dense cores evolving according to these theories. The results are compared with CS observations of nearby dense cores. It is shown that the Larson-Penston flow overestimates the velocity width of the CS lines by a large margin and cannot be reconciled with the observations
Black Poplar (Populus nigra L.) Root Extracellular Trap, Structural and Molecular Remodeling in Response to Osmotic Stress

The root extracellular trap (RET) consists of root-associated, cap-derived cells (root AC-DCs) and their mucilaginous secretions, and forms a structure around the root tip that protects against biotic and abiotic stresses. However, there is little information concerning the changes undergone by the RET during droughts, especially for tree species. Morphological and immunocytochemical approaches were used to study the RET of black poplar (Populus nigra L.) seedlings grown in vitro under optimal conditions (on agar-gelled medium) or when polyethylene glycol-mediated (PEG6000—infused agar-gelled medium) was used to mimic drought conditions through osmotic stress. Under optimal conditions, the root cap released three populations of individual AC-DC morphotypes, with a very low proportion of spherical morphotypes, and equivalent proportions of intermediate and elongated morphotypes. Immunolabeling experiments using anti-glycan antibodies specific to cell wall polysaccharide and arabinogalactan protein (AGP) epitopes revealed the presence of homogalacturonan (HG), galactan chains of rhamnogalacturonan-I (RG-I), and AGPs in root AC-DC cell walls. The data also showed the presence of xylogalacturonan (XGA), xylan, AGPs, and low levels of arabinans in the mucilage. The findings also showed that under osmotic stress conditions, both the number of AC-DCs (spherical and intermediate morphotypes) and the total quantity of mucilage per root tip increased, whereas the mucilage was devoid of the epitopes associated with the polysaccharides RG-I, XGA, xylan, and AGPs. Osmotic stress also led to reduced root growth and increased root expression of the P5CS2 gene, which is involved in proline biosynthesis and cellular osmolarity maintenance (or preservation) in aerial parts. Together, our findings show that the RET is a dynamic structure that undergoes pronounced structural and molecular remodeling, which might contribute to the survival of the root tip under osmotic conditions.
Compelling Evidence for the Role of Retained Austenite in the Formation of Low Cycle Fatigue Extrusions in a 9Ni Steel

The 9Ni martensitic steels have a martensitic microstructure which contains retained austenite after solution heat treatment and water quenching. Under low cycle fatigue, extrusions formed at the surface of the material and were very close to martensite lath boundaries. The presence of retained austenite at martensite laths has been highly suspected to impact the cyclic plasticity. However, the nano-size of the austenitic phase makes it difficult to obtain clear evidence of its role. The paper focuses on the precise determination of these extrusions and the link with the retained austenite. The paper also emphasizes the innovative and promising use of magnetic force microscopy (MFM) to document cyclic plasticity of a 9Ni steel. It is shown that electron microscopies, even the most advanced ones, may be unsuccessful in reaching this goal, while magnetic force microscopy (MFM) overcame the difficulty. This technique has allowed imaging of both the extrusion and the retained austenite. These analyses confirm that the fatigue extrusions originated from a local displacement of martensite lath. The proposed mechanism, in which the retained austenitic film acts as a lubricant film or greasy film promoting a flowing of martensite along the interfaces, is unambiguously demonstrated.
Change of metformin concentrations in the liver as a pharmacological target site of metformin after long-term combined treatment with ginseng berry extract

Metformin as an oral glucose-lowering drug is used to treat type 2 diabetic mellitus. Considering the relatively high incidence of cardiovascular complications and other metabolic diseases in diabetic mellitus patients, a combination of metformin plus herbal supplements is a preferrable way to improve the therapeutic outcomes of metformin. Ginseng berry, the fruit of Panax ginseng Meyer, has investigated as a candidate in metformin combination mainly due to its anti-hyperglycemic, anti-hyperlipidemic, anti-obesity, anti-hepatic steatosis and anti-inflammatory effects. Moreover, the pharmacokinetic interaction of metformin via OCTs and MATEs leads to changes in the efficacy and/or toxicity of metformin. Thus, we assessed how ginseng berry extract (GB) affects metformin pharmacokinetics in mice, specially focusing on the effect of the treatment period (i.e., 1-day and 28-day) of GB on metformin pharmacokinetics. In 1-day and 28-day co-treatment of metformin and GB, GB did not affect renal excretion as a main elimination route of metformin and GB therefore did not change the systemic exposure of metformin. Interestingly, 28-day co-treatment of GB increased metformin concentration in the livers (i.e., 37.3, 59.3% and 60.9% increases versus 1-day metformin, 1-day metformin plus GB and 28-day metformin groups, respectively). This was probably due to the increased metformin uptake via OCT1 and decreased metformin biliary excretion via MATE1 in the livers. These results suggest that co-treatment of GB for 28 days (i.e., long-term combined treatment of GB) enhanced metformin concentration in the liver as a pharmacological target tissue of metformin. However, GB showed a negligible impact on the systemic exposure of metformin in relation to its toxicity (i.e., renal and plasma concentrations of metformin).
Varieties Satisfying the Triangular Scheme Need Not Be Congruence Distributive

A diagrammatic scheme characterizing congruence distributivity of congruence permutable algebras was introduced by the first author in 2001. It is known under the name Triangular Scheme. It is known that every congruence distributive algebra satisfies this scheme and an algebra satisfying the Triangular Scheme which is not congruence distributive was found by E. K. Horvath, G. Czedli and the autor in 2003. On the other hand, it was an open problem if a variety of algebras satisfying the Triangular Scheme must be congruence distributive. We get a negative solution by presenting an example.
Whole-Genome Analysis of Antimicrobial-Resistant Salmonella enterica Isolated from Duck Carcasses in Hanoi, Vietnam

Salmonella enterica is one of the most dangerous foodborne pathogens listed by the World Health Organization. In this study, whole-duck samples were collected at wet markets in five districts in Hanoi, Vietnam, in October 2019 to assess their Salmonella infection rates and evaluate the susceptibility of the isolated strains to antibiotics currently used in the prophylaxis and treatment of Salmonella infection. Based on the antibiotic resistance profiles, eight multidrug resistance strains were whole-genome-sequenced, and their antibiotic resistance genes, genotypes, multi-locus sequence-based typing (MLST), virulence factors, and plasmids were analyzed. The results of the antibiotic susceptibility test indicate that phenotypic resistance to tetracycline and cefazolin was the most common (82.4%, 28/34 samples). However, all isolates were susceptible to cefoxitin and meropenem. Among the eight sequenced strains, we identified 43 genes associated with resistance to multiple classes of antibiotics such as aminoglycoside, beta-lactam, chloramphenicol, lincosamide, quinolone, and tetracycline. Notably, all strains carried the blaCTX-M-55 gene, which confers resistance to third-generation antibiotics including cefotaxime, cefoperazone, ceftizoxime, and ceftazidime, as well as resistance genes of other broad-spectrum antibiotics used in clinical treatment such as gentamicin, tetracycline, chloramphenicol, and ampicillin. Forty-three different antibiotic resistance genes were predicted to be present in the isolated Salmonella strains’ genomes. In addition, three plasmids were predicted in two strains, 43_S11 and 60_S17. The sequenced genomes also indicated that all strains carried SPI-1, SPI-2, and SPI-3. These SPIs are composed of antimicrobial resistance gene clusters and thus represent a potential threat to public health management. Taken together, this study highlights the extent of multidrug-resistant Salmonella contamination in duck meat in Vietnam.
Acoustical properties of partially reticulated foams with high and medium flow resistance

A new method for measuring impedance has been used for evaluating the normal surface impedance of three foams in free field. The results have been interpreted using the Biot theory, the two dilatational waves being taken into account. It has been pointed out from the theory that, for high flow resistance, the ratio of the acoustical velocities of the frame and the air is close to 1 at the surface of the foam. This ratio decreases with flow resistance but is never negligible for the studied foams. For foams with high flow resistance, the contributions of the two waves must be taken into account when calculating the impedance, and a description with only one wave would not be realistic. For foams with medium flow resistance, the one‐wave approximation for calculating the surface impedance is a good approximation in the whole range of acoustical frequencies.
Low-field giant magnetoresistance in layered magnetic rings

The low-field magnetization reversal of NiFe/Cu/Co multilayer mesoscopic elliptical and circular rings has been investigated via magnetoresistance measurements and micromagnetic modeling. Minor loop measurements, in which the NiFe layer is cycled for a fixed Co layer configuration, show qualitatively different behavior depending on whether the Co layer is present in a vortex or an onion state. Micromagnetic simulations are in excellent agreement with the experimental data and confirm the dominant role played by magnetostatic interactions between the Co and NiFe layers, as a result of stray fields from the domain walls present in the layers. Multiple stable remanent resistance levels can be obtained by cycling the rings at modest fields.