Miracle-dz/UniFAR-FTUs huggingface dataset:
Microcystin quota, cell division and microcystin net production of precultured Microcystis aeruginosa CYA 228 (Chroococcales, Cyanophyceae) under field conditions

Abstract The relationship between the specific cell division rate (μc), the specific microcystin (mcyst) production rate (μmcyst) and the cellular content of mcyst (μmcyst) was investigated during growth of Microcystis aeruginosa strain CYA 228 cells in the field (microcosms), and the results were compared with previous data obtained from batch cultures. Growth of an easily recognizable unicellular culture alga in the field made it possible to evaluate different ways of expressing mcyst field data as the ratio of mcyst to dry weight, protein or chlorophyll a (Chl a) against the mcyst quota. The population of CYA 228 cells increased from day 1 to day 7, but decreased from day 7 to day 1 7. More than a threefold variation was observed in Qmcyst of M. aeruginosa cells under field conditions, which indicates that the relationship between μc and μmcyst was not strictly linear. The data from the present experiment support the hypothesis of a constitutive mcyst net production. The average Qmcyst of cells grown under field conditions was 85.7 ± 43.6 (x̄ ± s) fg mcyst cell−1 compared to the average of 278 ± 115 (x̄ ± s) fg mcyst cell−1 found previously under laboratory conditions. The less favourable light conditions during the field study probably caused the reduction in mcyst quota. The data highlight the importance of determining mcyst quotas or the ratio of mcyst to Chl a, because confusing interpretations arise from determining the gravimetric mcyst content or mcyst: protein ratios in the field.
Protein-Based Nanoparticles as Drug Delivery Systems

Nanoparticles have been extensively used as carriers for the delivery of chemicals and biomolecular drugs, such as anticancer drugs and therapeutic proteins. Natural biomolecules, such as proteins, are an attractive alternative to synthetic polymers commonly used in nanoparticle formulation because of their safety. In general, protein nanoparticles offer many advantages, such as biocompatibility and biodegradability. Moreover, the preparation of protein nanoparticles and the corresponding encapsulation process involved mild conditions without the use of toxic chemicals or organic solvents. Protein nanoparticles can be generated using proteins, such as fibroins, albumin, gelatin, gliadine, legumin, 30Kc19, lipoprotein, and ferritin proteins, and are prepared through emulsion, electrospray, and desolvation methods. This review introduces the proteins used and methods used in generating protein nanoparticles and compares the corresponding advantages and disadvantages of each.
Frogs, Fish and Forestry: An Integrated Watershed Network Paradigm Conserves Biodiversity and Ecological Services

Successfully addressing the multitude of stresses influencing forest catchments, their native biota, and the vital ecological services they provide humanity will require adapting an integrated view that incorporates the full range of natural and anthropogenic disturbances acting on these landscapes and their embedded fluvial networks. The concepts of dendritic networks, disturbance domains, the stream continuum, and hydrologic connectivity can facilitate this integration. Managing catchments based on these combined concepts would better maintain all the components of watersheds and the interacting processes that comprise their ecological integrity. To examine these ideas, I review riparian protection regulations in the Pacific Northwest of the United States, regulations considered by many to be among the best available, and evaluate their ability to protect headwater amphibians. I present evidence for the inadequacy of these rules to maintain robust populations of these amphibians, and discuss the implications of these shortcomings for downstream-dwelling coho salmon. Emphasizing headwaters (1st to 3rd-order channels), I discuss disturbance regimes and how differences in their fluvial and geomorphic processes determine the structuring of channels, their internal environments, and the composition of the resident biota. I examine amphibian dependence on specific channel attributes, and discuss links between their abundances, altered attribute states, and natural and anthropogenic disturbances. Using these examples, I discuss the limitations of current protections to maintain key attributes necessary to support robust populations of headwater amphibians, and via hydrologic connectivity, many downstream organisms. I propose that the goal of maintaining whole catchment biodiversity and ecological services could be improved by managing watersheds based on integrating science-based network organizing concepts and evaluating and adjusting outcomes with a suite of responsive bio-indicators.
Genetic variability and correlation analysis for quantitative traits in chickpea genotypes (Cicer arietinum L.)

The present studies were conducted to the estimation of correlation for quantitative traits in chickpea (Cicer arietinum L.) in the field of the department of Plant Breeding and Genetics, University of Agriculture, Faisalabad, during the crop season 2009 to 2010. Correlation studies showed that biomass per plant, number of pods per plant, number of secondary branches per plant, number of seeds per pod and 100-seed weight were positive and significant at genotypic level but positive and highly significant at phenotypic level. Whereas number of days taken to flowering, number of days taken to maturity, primary branches per plant, secondary branches per plant were positively correlated with the grain yield per plant at genotypic and phenotypic levels. Plant height was negative and non-significantly correlated with grain yield per plant at both genotypic and phenotypic levels. Key words: Cicer arietinum, correlation, genotypic, phenotypic, chickpea, Pakistan.
Comparison of different carotid stent designs in endovascular therapy of severe carotid artery stenosis

Background: One of the major periprocedural risks of carotid artery stenting is embolism caused either by plaque debris or by local thrombus forming. Double-layer micromesh stent design has shown to lower the chance of debris embolism but might have a slightly higher risk of local thrombus forming. Thus, we compared two different stent designs regarding safety and outcome profile in elective patients with high-grade carotid artery stenosis using a self-expanding, double-layer micromesh carotid stent system (DLCS) or a self-expanding hybrid carotid stent system (HCS). Methods: A single-center, open-label, retrospective cohort study of 67 consecutive, elective patients with high-grade symptomatic and asymptomatic carotid stenosis was executed at a comprehensive stroke center. Outcome measures were reocclusion rate, periprocedural symptomatic ischemic events, as well as other periprocedural complications, and recurrent stroke and mortality at 30 days’ follow-up. Results: Thirty-two patients (24% women, median age 75 years (interquartile range (IQR) 71–80) were treated with DLCS, and 35 patients (29% women, median age 71 years (IQR 63–76) years) with HCS. In both groups, pretreatment carotid stenosis degree was similar (median NASCET of 80%). Successful deployment was achieved in all cases without technical failure, and both groups did not differ in reocclusion rates, recurrent stroke, and mortality within 30 days. Conclusions: DCLS and HCS revealed to have similar safety and outcome profile in elective patients with high-grade symptomatic as well as asymptomatic carotid artery stenosis.
Foraging habitat determines predator-prey size relationships in marine fishes.

Predator-prey size (PPS) relationships are determined by predator behaviour, with the likelihood of prey being eaten dependent on their size relative to that of the consumer. Published PPS relationships for 30 pelagic or benthic marine fish species were analysed using quantile regression to determine how median, lower, and upper prey sizes varied with predator size and habitat. Habitat effects on predator foraging activity/mode, morphology, growth, and natural mortality are quantified and the effects on PPS relationships explored. Pelagic species are more active, more likely to move by caudal fin propulsion, and grow more rapidly but have higher mortality rates than benthic species, where the need for greater manoeuvrability when foraging in more physically complex habitats favours ambush predators using pectoral fin propulsion. Prey size increased with predator size in most species but pelagic species ate relatively smaller prey than benthic predators. As pelagic predators grew lower prey size limits changed little and prey size range increased but median relative prey size declined, whereas the lower limit increased and median relative prey size was constant or increased in benthic species. This article is protected by copyright. All rights reserved.
Sorbates in fish and fish products—a review

Abstract A large number of studies have been carried out to determine the efficacy of sorbates in extending the shelf‐life of fish and fish products. The results of these studies indicate that sorbates in combination with other compounds or techniques inhibit the growth of microorganisms including some potential pathogens in these products, thereby extending their shelf‐life. Sorbates retarded the chemical changes occurring in fish during storage and inhibited the formation of trimethylamine and other chemicals responsible for fish spoilage. Sorbates prevented the development of off‐odors in fish and fish products by preventing oxidation in them. The acceptability scores of sorbate‐treated products were higher as compared to untreated control samples. In short, studies conducted on the use of sorbates in fish and fish products suggest that sorbates in combination with other compounds or techniques can be used as an effective preservative for extending the shelf‐life of fish products.
Fiber-1, Not Fiber-2, Directly Mediates the Infection of the Pathogenic Serotype 4 Fowl Adenovirus via Its Shaft and Knob Domains

Among 12 serotypes of fowl adenovirus (FAdV), FAdV-1, FAdV-4, and FAdV-10 all carry two fiber genes (i.e., fiber-1 and fiber-2), whereas other serotypes have only one. As important viral surface proteins, the fibers play vital roles in the infection and pathogenesis of FAdV. However, the importance of the fibers to the infection and pathogenesis of FAdV may be different from each other. Recent studies reveal that fiber-2 is identified as a determinant of virulence, but which fiber triggers the infection of FAdV-4 remains unknown. In this study, fiber-1 was identified as a key factor for directly mediating the infection of FAdV-4 through its shaft and knob domains, whereas fiber-2 did not play a role in triggering FAdV-4 infection. The results suggest that fiber-1 and its knob domain may serve as a target for identifying the receptor of FAdV-4 and developing efficient drugs or vaccines against FAdV-4. ABSTRACT Recently, the disease of hepatitis-hydropericardium syndrome (HPS) caused by serotype 4 fowl adenovirus (FAdV-4) has spread widely and resulted in huge economic losses to the poultry industry. Although the genome of FAdV-4 has two fiber genes (fiber-1 and fiber-2), the exact role of the genes in the infection of FAdV-4 is barely known. In this study, through superinfection resistance analysis and an interfering assay, we found that fiber-1, but not fiber-2, was the key factor for directly triggering the infection of FAdV-4. The truncation analysis further revealed that both of the shaft and knob domains of fiber-1 were required for the infection. Moreover, the sera against the knob domain were able to block FAdV-4 infection, and the knob-containing fusion protein provided efficient protection against the lethal challenge of FAdV-4 in chickens. All the data demonstrated the significant roles of fiber-1 and its knob domain in directly mediating the infection of FAdV-4, which established a foundation for identifying the receptor of FAdV-4 and developing efficient vaccines against FAdV-4. IMPORTANCE Among 12 serotypes of fowl adenovirus (FAdV), FAdV-1, FAdV-4, and FAdV-10 all carry two fiber genes (i.e., fiber-1 and fiber-2), whereas other serotypes have only one. As important viral surface proteins, the fibers play vital roles in the infection and pathogenesis of FAdV. However, the importance of the fibers to the infection and pathogenesis of FAdV may be different from each other. Recent studies reveal that fiber-2 is identified as a determinant of virulence, but which fiber triggers the infection of FAdV-4 remains unknown. In this study, fiber-1 was identified as a key factor for directly mediating the infection of FAdV-4 through its shaft and knob domains, whereas fiber-2 did not play a role in triggering FAdV-4 infection. The results suggest that fiber-1 and its knob domain may serve as a target for identifying the receptor of FAdV-4 and developing efficient drugs or vaccines against FAdV-4.
The relationship of cognitive change over time to the self-reported Ascertain Dementia 8-item Questionnaire in a general population.

OBJECTIVE The aim of the study was to examine the relationship between longitudinally assessed cognitive functioning and self-reported dementia status using the Ascertain Dementia 8-item questionnaire (AD8) in a national population-based sample. METHODS The analysis included 14,453 participants from the REasons for Geographic and Racial Differences in Stroke study. A validated cutoff of ≥2 symptoms endorsed on the AD8 (administered 10 years after enrollment) represented positive AD8 status. Incident cognitive impairment was defined as change from intact to impaired status in the Six-Item Screener score, and cognitive decline was defined by trajectories of Letter "F" Fluency from the Montreal Cognitive Assessment, and Animal Fluency, Word List Learning, and Word List Delayed recall, all from the Consortium to Establish a Registry for Alzheimer's Disease battery. Logistic regression models controlled for demographics, health variables, and depressive symptoms. RESULTS Sensitivity and specificity of the AD8 to detect incident cognitive impairment were 45.2% and 78.4%, respectively. Incident cognitive impairment and a one-word decline in WLL increased the odds of self-reported positive AD8 by 96% (95% CI: 1.68-2.28) and 27% (95% CI: 1.17-1.37), respectively. There was a strong association between high depression risk and self-reported positive AD8 in sensitivity analyses. CONCLUSIONS Incident cognitive impairment and high depression risk were the strongest predictors of self-reported positive AD8 in this population-based sample. Our results inform the utility of the AD8 as a self-report measure in a large, national sample that avoids selection biases inherent in clinic-based studies. The AD8 is screening measure and should not be used to diagnose dementia clinically.
Development of Self-Healing Cement Slurry through the Incorporation of Dual-Encapsulated Polyacrylamide for the Prevention of Water Ingress in Oil Well

In the present work, a novel cross-linked polymer was synthesized though the anionic polymerization of cyanoacrylate with moisture as an initiator, methylene-bis-acrylamide as a cross-linker, and linseed oil as a spacer. Two layers of the synthesized polymer was coated over polyacrylamide for its homogenous impregnation in Class-G cement slurry for the synthesis of cement core. Fourier Transformation Infrared spectroscopy and X-Ray diffraction spectrum of the synthesized polymer and cement core were obtained to investigate the presence of different functional groups and phases. Moreover, the morphologies of the dual-encapsulated polyacrylamide was observed through scanning electron microscopy. Furthermore, the water-absorption capacity of the synthesized dual-encapsulated polyacrylamide in normal and saline conditions were tested. A cement core impregnated with 16% of dosage of dual-encapsulated polyacrylamide possesses an effective self-healing capability during the water-flow test. Moreover, the maximum linear expansion of the cement core was observed to be 26%. Thus, the impregnation of dual-encapsulated polyacrylamide in cement slurry can exhibit a superior self-healing behavior upon water absorption in an oil well.
COUNTCOLORS, AN R PACKAGE FOR QUANTIFICATION OF THE FLUORESCENCE EMITTED BY PSEUDOGYMNOASCUS DESTRUCTANS LESIONS ON THE WING MEMBRANES OF HIBERNATING BATS

Abstract: Pseudogymnoascus destructans colonizes the wing membrane of hibernating bats with the potential to form dense fungal hyphae aggregates within cupping erosions. These fungal cupping erosions emit a characteristic fluorescent orange-yellow color when the wing membrane is transilluminated with 385 nm ultraviolet (UV) light. The purpose of this study was to create and validate the R package, countcolors, for quantifying the distinct orange–yellow UV fluorescence in bat-wing membrane lesions caused by P. destructans. Validation of countcolors was completed by first quantifying the percent area of 20, 2.5 cm2 images. These generated images were of two known pixel colors ranging from 0% to 100% of the pixels. The countcolors package accurately measured the known proportion of a given color in each image. Next, 40, 2.5 cm2 sections of UV transilluminated photographs of little brown bat (Myotis lucifugus) wings were given to a single evaluator. The area of fluorescence was both manually measured and calculated using image analysis software and quantified with countcolors. There was good agreement between the two methods (Pearson's correlation=0.915); however, the manual use of imaging software showed a consistent negative bias. Reproducibility of the analysis methods was tested by providing the same images to naive evaluators who previously never used the software; no significant difference (P=0.099) was found among evaluators. Using the R package countcolors takes less time than does manually measuring the fluorescence in image analysis software, and our results showed that countcolors can improve the accuracy when quantifying the area of P. destructans infection in bat wing-membranes.
Value of lung ultrasonography to predict weaning success in ventilated neonates

Invasive mechanical ventilation (MV) is lifesaving for critically ill neonates. Limiting the duration of MV support is crucial. Lung ultrasonography is a bedside technique useful to predict weaning success in adults, but few data are available about its use in neonates. Our aim was to assess the value of lung ultrasonography to predict weaning success of the ventilated neonates.
Influence of parity, birth order, litter size and birth weight on duration of farrowing and birth intervals in commercial exotic sows in Zimbabwe

Although the farrowing process has an impact on postnatal piglet survivability and growth performance, information on factors that influence the farrowing process under field conditions is rare. The objective of the study was to determine factors influencing the duration of farrowing and birth intervals in Large White×Landrace crossbred sows. Data were collected from the Pig Industry Board, Acturus, Zimbabwe. The durations of farrowing were log transformed to normalize them, while birth intervals remained skewed after the transformation. As a result, Friedman's test was used to analyse for factors affecting birth intervals. The mean duration of farrowing was 217 min. Number of piglets born alive (NBA), average birth weight and the presence or absence of stillbirths influenced ( P P Y =0·1011 x 2 −1·771 x +37·917 ( P Y =0·0021 x 2 −0·121 x +23·952 ( P
DENSITY DEPENDENCE, PREY DEPENDENCE, AND POPULATION DYNAMICS OF MARTENS IN ONTARIO

Ecological factors influencing demographic parameters of mammalian carnivores are poorly understood, due to the difficulty of simultaneously measuring predator and prey populations over an extended period. We used cohort analysis based on age-specific harvest data to estimate population densities over 20 yr for martens (Martes americana). Marten abundance increased threefold over the study period, probably due to relaxation in harvest intensity at the beginning of the study interval. Changes in rates of population growth by martens were positively correlated with population densities of three species of small mammals recorded over the same time span: deer mice (Peromyscus maniculatus), red squirrels (Tamiasciuris hudsonicus), and flying squirrels (Glaucomys sabrinus). We found no evidence of short-term cycles in marten abundance, nor were there significant cross-correlations at lags greater than 1 with prey population densities. Martens also showed evidence of density-dependent population growth. Such density dependence beyond the demographic effect of variation in prey density was possibly due to agonistic interactions among territory holders. Such mixtures of prey dependence and density dependence often have a stabilizing influence in theoretical models, which could contribute to the observed stability of deer mouse, red squirrel, and marten populations in Algonquin Park. Harvest intensity was negatively related to yearly variation in marten population growth. Mortality due to trapping averaged 37.9% over two decades, with no detectable relationship to changes in marten population density. Hence, harvesting acted as a stochastic external variable that was additive to density-dependent and prey-dependent effects.
Psychosocial Risk Factors for Food Insecurity in Puerto Ricans Living in the USA from Baseline to 5-Year Follow-Up.

BACKGROUND Food insecurity is prevalent among Puerto Rican adults in the USA and is associated with adverse psychosocial outcomes. However, the direction of this association has not been established in this understudied population. OBJECTIVES In this study, we aimed to examine the longitudinal association between a group of psychosocial risk factors and subsequent food insecurity in a cohort of Puerto Rican adults. METHODS Secondary analysis was conducted using data from the prospective Boston Puerto Rican Health Study. A total of 517 Puerto Rican participants aged 45-75 y in the Boston area who were food secure at baseline, and who completed food security surveys at baseline and 5 y were included. Psychosocial factors, including depressive symptoms, stress, tangible social support, and acculturation were assessed with validated instruments. Multivariable logistic regression models were used to examine the risk of food insecurity at 5 y, as a function of psychosocial factors at baseline and their changes over 5 y, adjusting for age, sex, education, baseline and change in total annual household income, and in family size. RESULTS The cumulative incidence of food insecurity at 5 y was 12.6%. The odds of incident food insecurity was significantly associated with baseline depressive symptom score [OR = 1.78 (1.16, 2.76) per each 10 score units], with change in depressive symptom score [OR = 1.50 (1.07, 2.09) per each 10-unit increase], and with change in perceived stress [OR = 1.59 (1.01, 2.51) per each 10-unit increase], after adjusting for potential confounders. CONCLUSION In this cohort of Puerto Rican adults, depressive symptoms at baseline, and increases in depressive symptoms and perceived stress over 5 y were associated with a higher risk of food insecurity. Psychosocial health and environment appear to play important roles in predicting risk of food insecurity in the Puerto Rican community.