Miracle-dz/UniFAR-FTUs huggingface dataset:
Living (and reproducing) on the edge: reproductive phenology is impacted by rainfall and canopy decline in a Mediterranean eucalypt

Many of the worlds’ forests and woodlands are currently showing symptoms of declining condition due to a range of factors, including changing climatic conditions, drought and insect herbivory. Altered abiotic and biotic conditions can influence the condition of trees that can, in turn, affect tree reproductive cycles. However, the potential impact of tree decline on reproductive cycles has rarely been examined. This study investigated the influence of canopy condition on the reproductive cycle of Eucalyptus wandoo Blakely in south-western Australia. Canopy and seed trap monitoring were used to assess bud production, flowering, fruiting and seed fall over 12 months at 24 sites across two locations (Dryandra Woodland and Wandoo Conservation Park). Time since last fire, rainfall, ambient temperatures and the condition of individual trees were recorded. We found that bud production, flowering and fruiting was correlated with tree condition: healthier trees were generally associated with higher reproductive effort. Time since last fire was also strongly related to the reproductive efforts at both locations. Declining annual rainfall and increased temperatures also impact on reproduction, made evident by the aborted flowering in Dryandra Woodland. Decline in tree condition, coupled with changes in climate, have major implications for flowering phenology of this species and have the potential to alter reproductive effort, recruitment and future population dynamics. Consideration of these issues should be incorporated into the conservation management of E. wandoo and similar Eucalypt species.
Selection or adaptation: Differences in growth performance of juvenile turbot (Scophthalmus maximus Rafinesque) from two close-by localities off Norway

Abstract Growth perfonnance was investigated in two populations of juvenile turbot (Scophthalmus maximus Rafinesque) from two close-by localities on the Norwegian coast, both caught at the southwest coast and called SW1 and SW2, reared together under four different temperature regimes. All growth indices showed that the growth performance of the SW1 Norwegian population was superior compared to the SW2 Norwegian population especially at the extreme temperatures. Our findings may indicate local adaptation of turbot. We discuss if local adaptation will be reflected in neutral genetic markers as the variation in growth is higher than the genetic variability previously reported for this species, which might make the non-neutral markers a better tool to understand local adaptation of fish populations. Alternatively our results could indicate hatchery selection or a strong genetic drift which may cause a substantial genetic change eventually leading to inbreeding depression which again may cause decreased growth.
Biologically Plausible Class Discrimination Based Recurrent Neural Network Training for Motor Pattern Generation

Biological brain stores massive amount of information. Inspired by features of the biological memory, we propose an algorithm to efficiently store different classes of spatio-temporal information in a Recurrent Neural Network (RNN). A given spatio-temporal input triggers a neuron firing pattern, known as an attractor, and it conveys information about the class to which the input belongs. These attractors are the basic elements of the memory in our RNN. Preparing a set of good attractors is the key to efficiently storing temporal information in an RNN. We achieve this by means of enhancing the “separation” and “approximation” properties associated with the attractors, during the RNN training. We furthermore elaborate how these attractors can trigger an action via the readout in the RNN, similar to the sensory motor action processing in the cerebellum cortex. We show how different voice commands by different speakers trigger hand drawn impressions of the spoken words, by means of our separation and approximation based learning. The method further recognizes the gender of the speaker. The method is evaluated on the TI-46 speech data corpus, and we have achieved 98.6% classification accuracy on the TI-46 digit corpus.
Emerging Developments in Human Induced Pluripotent Stem Cell-Derived Microglia: Implications for Modelling Psychiatric Disorders With a Neurodevelopmental Origin

Microglia, the resident tissue macrophages of the brain, are increasingly implicated in the pathophysiology of psychiatric disorders with a neurodevelopmental origin, including schizophrenia. To date, however, our understanding of the potential role for these cells in schizophrenia has been informed by studies of aged post-mortem samples, low resolution in vivo neuroimaging and rodent models. Whilst these have provided important insights, including signs of the heterogeneous nature of microglia, we currently lack a validated human in vitro system to characterize microglia in the context of brain health and disease during neurodevelopment. Primarily, this reflects a lack of access to human primary tissue during developmental stages. In this review, we first describe microglia, including their ontogeny and heterogeneity and consider their role in brain development. We then provide an evaluation of the potential for differentiating microglia from human induced pluripotent stem cells (hiPSCs) as a robust in vitro human model system to study these cells. We find the majority of protocols for hiPSC-derived microglia generate cells characteristically similar to foetal stage microglia when exposed to neuronal environment-like cues. This may represent a robust and relevant model for the study of cellular and molecular mechanisms in schizophrenia. Each protocol however, provides unique benefits as well as shortcomings, highlighting the need for context-dependent protocol choice and cross-lab collaboration and communication to identify the most robust and translatable microglia model.
Species Identity and Initial Size Rather Than Neighborhood Interactions Influence Survival in a Response-Surface Examination of Competition

To measure intraspecific and interspecific interaction coefficients among tree species is the key to explore the underlying mechanisms for species coexistence and biodiversity maintenance in forests. Through the response surface experimental design, we established a long-term field experiment by planting 27,300 seedlings of four tree species (Erythrophleum fordii, Pinus massoniana, Castanopsis fissa, and Castanopsis carlesii) in 504 plots in different species combinations (six pairwise combinations of four species), abundance proportions (five abundance proportions of two species, i.e. A: B = 1:0, 3:1, 1:1, 1:3, 0:1), and stand densities (25, 36, 64, and 100 seedlings per plot). In this initial report, we aimed to quantify the relative importance of biotic and abiotic factors on seedling survival at the early stage of growth, which is a critical period for seedling establishment. We found that plot-level seedling survival rate was determined by species combination and their abundance proportion rather than stand density. At the individual level, individual survival probability was mainly explained by species identity, initial seedling size, and soil conditions rather than neighborhood competition. Our study highlights that the seedling intrinsic properties may be the key factors in determining seedling survival rate, while neighborhood effects were not yet prominent at the seedling life stage.
MAp34 Regulates the Non-specific Cell Immunity of Monocytes/Macrophages and Inhibits the Lectin Pathway of Complement Activation in a Teleost Fish

The lectin pathway of the complement system is one of the main components of innate immunity, which plays a pivotal role in the defense against infectious microorganisms and maintains immune homeostasis. However, its control mechanisms remain unclear in teleost fish. In this study, we described the identification and functional characterization of a mannose-binding lectin associated protein MAp34 (OnMAp34) from Nile tilapia (Oreochromis niloticus) at molecular, cellular, and protein levels. The open reading frame (ORF) of OnMAp34 is 918 bp of nucleotide sequence encoding a polypeptide of 305 amino acids. The deduced amino acid sequence has three characteristic structures, including two C1r/C1s-Uegf-BMP domains (CUB) and one epidermal growth factor domain (EGF). Expression analysis revealed that the OnMAp34 was highly expressed in the liver and widely existed in other examined tissues. In addition, the mRNA and protein expression levels of OnMAp34 were remarkably altered upon infection with Streptococcus agalactiae and Aeromonas hydrophila in vivo and in vitro. Further, we found that the OnMAp34 could participate in the non-specific cellular immune defense, including the regulation of inflammation, migration, and enhancement of phagocytosis of monocytes/macrophages. Moreover, the OnMAp34 could compete with OnMASPs to combine OnMBL and inhibit the lectin pathway of complement activation. Overall, our results provide new insights into the understanding of MAp34 as a potent regulator in the lectin complement pathway and non-specific cell immunity in an early vertebrate.
Sodium Fluctuations in Astroglia and Their Potential Impact on Astrocyte Function

Astrocytes are the main cell type responsible for the regulation of brain homeostasis, including the maintenance of ion gradients and neurotransmitter clearance. These processes are tightly coupled to changes in the intracellular sodium (Na+) concentration. While activation of the sodium-potassium-ATPase (NKA) in response to an elevation of extracellular K+ may decrease intracellular Na+, the cotransport of transmitters, such as glutamate, together with Na+ results in an increase in astrocytic Na+. This increase in intracellular Na+ can modulate, for instance, metabolic downstream pathways. Thereby, astrocytes are capable to react on a fast time scale to surrounding neuronal activity via intracellular Na+ fluctuations and adjust energy production to the demand of their environment. Beside the well-documented conventional roles of Na+ signaling mainly mediated through changes in its electrochemical gradient, several recent studies have identified more atypical roles for Na+, including protein interactions leading to changes in their biochemical activity or Na+-dependent regulation of gene expression. In this review, we will address both the conventional as well as the atypical functions of astrocytic Na+ signaling, presenting the role of transporters and channels involved and their implications for physiological processes in the central nervous system (CNS). We will also discuss how these important functions are affected under pathological conditions, including stroke and migraine. We postulate that Na+ is an essential player not only in the maintenance of homeostatic processes but also as a messenger for the fast communication between neurons and astrocytes, adjusting the functional properties of various cellular interaction partners to the needs of the surrounding network.
Relationship Between Personality Types in MBTI and Dream Structure Variables

This study aimed to explore relationships between personality type variables and dream structure variables. In the questionnaire experiment (N = 410), we investigated associations between different personality variables in the Myers-Briggs Type Indicator questionnaire (MBTI) and various aspects of dreams in the Mannheim Dream questionnaire (MADRE). The MBTI has four dimensions. In the Extroversion/Introversion (E/I) dimension, I types dreamt more of emotional intensity and passive emotions than E types. In addition, I types may become more distressed in nightmares than E types. E types more frequently shared their dreams with others. In the Sensation/Intuition (S/N) dimension, N types had a more positive attitude toward dreams and can get more novel ideas and help from their dreams than S types. In the dream diary experiment (N = 47), we investigated whether the S/N dimension may influence waking events’ incorporation into dreams. External judges decoded paired waking events and dream reports. N types had more metaphorical incorporation than S types. More specifically, N types had more metaphorical expressions in their dreams than S types. This result may be due to the different characteristics between S types and N types. It may provide support for the dream continuity hypothesis.
Effect of litter type and stocking density on the performance of broilers

Two hundred and forty day-old, broiler chicks were reared on fresh and dry wheat straw (T1 and T2) and paddy straw (T3 and T4) litters. Birds were kept at a stocking density of 0.15 sq m/bird in T1 and T3 and stocking density of 0.18 sq m/bird in T2 and T4 by using pens of 2.25 sq m and 2.7 sq m, size, respectively. Better feed conversion ratio (1.89) was observed in birds reared at 0.18 sq m/bird suggesting more economic returns. The various carcass characteristics were not influenced by litter type or stocking density. The net profit per kilogram body weight was lowest (Rs. 1.83) in T1 (wheat straw litter and stocking density of 0.15 sq m./bird) and highest (Rs. 3.54) for T2 (wheat straw litter and stocking density of 0.18 sq m./bird).
Analysis of Drug Metabolizing Gene Panel in Osteosarcoma Patients Identifies Association Between Variants in SULT1E1, CYP2B6 and CYP4F8 and Methotrexate Levels and Toxicities

High-dose methotrexate is a cornerstone agent in the chemotherapeutic treatment of patients with osteosarcoma. However, patients often develop methotrexate-induced toxicities. We aim to identify determinants of methotrexate-induced toxicities in osteosarcoma patients by investigating the relation between drug plasma levels, methotrexate-induced toxicities, and germline variants in genes related to drug absorption, distribution, metabolism, and elimination. A cohort of 114 osteosarcoma patients was genotyped for 1,931 variants in 231 genes using the Drug Metabolism Enzymes and Transporters Plus array. Methotrexate plasma levels and laboratory measurements during and after high-dose methotrexate treatment concerning renal function, liver damage, and myelopoiesis to reflect toxicity outcomes were obtained. One hundred and thirteen patients and a subset of 545 variants in 176 genes passed quality control checks. Methotrexate plasma levels showed associations with creatinine, alanine aminotransferase, and hemoglobin. Genetic variant rs3736599 in the 5’-untranslated region of SULT1E1 was associated with lower 48 hour methotrexate plasma levels [coef -0.313 (95% CI -0.459 – -0.167); p = 2.60 × 10-5]. Association with methotrexate-induced decreased thrombocyte counts was found for two intronic variants in CYP2B6 {rs4803418 [coef -0.187 (95% CI -0.275 – -0.099); p = 3.04 × 10-5] and rs4803419 [coef -0.186 (95% CI -0.278 – -0.093); p = 8.80 × 10-5]}. An association with increased thrombocyte counts was identified for the intronic variant rs4808326 in CYP4F8 [coef 0.193 (95% CI 0.099 – 0.287); p = 6.02 × 10-5]. Moreover, a secondary analysis with a binary approach using CTCAE toxicity criteria resulted in a nominal significant associations (p < 0.05) for two out of three variants (rs4803418 and rs4808326). This is the first study to identify genetic variants in SULT1E1, CYP2B6, and CYP4F8 to be associated with methotrexate pharmacokinetics and toxicities. Validation of these variants in an independent cohort and further functional investigation of variants in the identified genes is needed to determine if and how they affect methotrexate plasma levels and the development of methotrexate-induced toxicities.
Insulin Treatment Reduces Susceptibility to Atrial Fibrillation in Type 1 Diabetic Mice

Diabetes has been identified as an independent risk factor for atrial fibrillation (AF), the most common chronic cardiac arrhythmia. Whether or not glucose and insulin disturbances observed during diabetes enhance arrhythmogenicity of the atria, potentially leading to AF, is not well-known. We hypothesized that insulin deficiency and impaired glucose transport provide a metabolic substrate for the development and maintenance of AF during diabetes. Transesophageal atrial pacing was used to induce AF in healthy, streptozotocin-induced insulin-deficient type 1 diabetic, and insulin-treated diabetic mice. Translocation of insulin-sensitive glucose transporters (GLUTs) to the atrial cell surface was measured using a biotinylated photolabeling assay in the perfused heart. Fibrosis and glycogen accumulation in the atrium were measured using histological analysis. Diabetic mice displayed mild hyperglycemia, increased duration and frequency of AF episodes vs. age-matched controls (e.g., AF duration: 19.7 ± 6.8 s vs. 1.8 ± 1.1 s, respectively, p = 0.032), whereas insulin-treated diabetic animals did not. The translocation of insulin-sensitive GLUT-4 and -8 to the atrial cell surface was significantly downregulated in the diabetic mice (by 67 and 79%, respectively; p ≤ 0.001), and rescued by insulin treatment. We did not observe fibrosis or glycogen accumulation in the atria of diabetic mice. Therefore, these data suggest that insulin and glucose disturbances were sufficient to induce AF susceptibility during mild diabetes.
Greater TMS-evoked frontoparietal effective connectivity is correlated with better cognitive performance

Fronto-parietal activity has been related to fluid intelligence and flexible cognitive control. However, causal insights on this relation are lacking. We used real-time integration of MRI-guided TMS and EEG to characterize the spatial and temporal properties of signal propagation between these two regions and relate them to cognitive performance. 31 healthy adults (55 ±6 years, 20 female) underwent TMS-EEG and a full cognitive assessment. Local and propagated current from 5 source space-reconstructed scouts ipsilateral to two stimulation sites (pre frontal cortex (PFC) and inferior parietal lobule (IPL)) was quantified in two-time windows (15-40ms and 40-80ms) and related to domain-general (global cognition) and domain-specific (memory, working memory, reasoning, flexibility, lexical access and visuo-spatial) cognitive functions. TMS-evoked activity from stimulation of the PFC and the IPL resulted in local and distributed activity across frontoparietal regions. TMS-evoked activity in local regions was not correlated with cognitive functions. In response to TMS of the PFC, propagated current to the distal superior parietal scout in the first 15-40ms was significantly associated with global cognition (β = 2.63, SE = .898, p = .008, R2 = .31). Similarly, following TMS of the IPL, propagation to the middle prefrontal gyrus scout (15-40ms) was significantly associated with global cognition (β = 2.67, SE = 1.289, p = .025, R2 = .27). In an exploratory step, domain-specific correlations were seen in the PFC condition. Locally evoked activity measured via source space reconstruction from TMS of two association hubs is not associated with cognitive functions. However, the propagation of the TMS pulse through frontoparietal connections is associated with overall cognitive ability. These associations are driven by a number of cognitive domains in the PFC stimulation condition.
Neuroprotective Effects of Celastrol on Transient Global Cerebral Ischemia Rats via Regulating HMGB1/NF-κB Signaling Pathway

Cerebral ischemia is a major cause of brain dysfunction, neuroinflammation and oxidative stress have been implicated in the pathophysiological process of cerebral ischemia/reperfusion injury. Celastrol is a potent inhibitor of inflammation and oxidative stress that has little toxicity. The present study was designed to evaluate whether celastrol has neuroprotective effects through anti-inflammatory and antioxidant actions, and to elucidate the possible involved mechanisms in transient global cerebral ischemia reperfusion (tGCI/R) rats. Celastrol (1, 2, or 4 mg/kg) was administrated intraperitoneally immediately after reperfusion and the effect of celastrol on reverting spatial learning and memory impairment was determined by Morris water maze (MWM) task. Inflammatory response and oxidative stress, hippocampal neuronal damage and glial activation, and HMGB1/NF-κB signaling pathway proteins were also examined. Our results indicated that celastrol dose-dependently reduced hippocampal and serum concentration of pro-inflammatory markers (TNF-α, IL-1β, and IL-6) and oxidative stress marker (MDA), whereas the anti-inflammatory marker IL-10 and antioxidant markers (GSH, SOD, and CAT) were increased significantly in celastrol treated tGCI/R rats. Celastrol alleviated apoptotic neuronal death, inhibited reactive glial activation and proliferation and improved ischemia-induced neurological deficits. Simultaneously, we found that mechanisms responsible for the neuroprotective effect of celastrol could be attributed to its anti-inflammatory and antioxidant actions via inhibiting HMGB1/NF-κB signaling pathway. These findings provide a proof of concept for the further validation that celastrol may be a superior candidate for the treatment of severe cerebral ischemic patients in clinical practice in the future.
Clinical Profile and Management of Rheumatic Heart Disease in Children and Young Adults at a Tertiary Cardiac Center in Indonesia

Introduction: Rheumatic heart disease (RHD) remains a major public health issue affecting children and young adults in developing countries. This study aimed to evaluate the clinical characteristics, management, and reactivation of RHD among children and young adults. Patients and Methods: This was a hospital-based retrospective study conducted at the National Cardiovascular Center Harapan Kita, Indonesia; we retrieved relevant data from patients diagnosed with RHD between 2012 and 2018. Results: Two hundred and seventy-nine patients were diagnosed with rheumatic heart disease, of whom 108 were children (mean age of 12.02 ± 3.36 years) and 171 were young adults (mean age was 24.9 ± 3.84). RHD was more common in female than in male young adults (1.5:1). Hospitalization due to RHD complications such as congestive heart failure was seen in 11.11% of cases in children, while pulmonary hypertension was present in 19.95% young adult cases. Reactivation of RHD occurred in 17.2% (48/279) cases, significantly in children (p < 0.001). Overall, the mitral valve (either isolated or combined) was the organ most affected in children (39.13%) and young adults (44.81%). Isolated mitral regurgitation was more common in children (13/21, 61.9%), while isolated mitral stenosis was more common in young adults (19/47, 40.42%). There was a high rate of rheumatic tricuspid valve disease in all populations (193/279, 69.17%) and reported involvement of pulmonary regurgitation (46/279, 16.48%). Multivalve lesions were more common than single lesions in both groups, with a combination of mitral and tricuspid regurgitation the predominant type in children (32/43, 74.41%) and mixed mitral lesion and tricuspid regurgitation in young adults (22/72, 30.56%). We observed a significant occurrence of quadrivalve lesions in children (p = 0.039). Valve repair was more common in children (49.07%) and replacement in young adults (32.16%), with low in-hospital mortality. Compliance with secondary prophylaxis was a significant challenge. Conclusion: Chronic RHD often presented with complications of the disease or reactivation of rheumatic fever (RF). Inadequate treatment of RF/RHD leads to extensive valvular damage and consequent disabilities. Efforts toward active early diagnosis and prompt treatment of RF/RHD and effective preventive measures are essential.