Miracle-dz/UniFAR-FTUs huggingface dataset:
Re-examining the Importance of Fish in the Diets of Stream-dwelling Crayfishes: Implications for Food Web Analyses and Conservation

Abstract We examined the diets of two species of stream-dwelling North American crayfishes (Orconectes propinquus and O. rusticus) at eight sites in the Midwestern United States both by measuring natural abundances of stable isotopes of carbon and nitrogen and by quantifying gut contents. Our goals were to test the hypothesis proposed by others that crayfish are primarily carnivorous, and in particular, to examine the frequency of fish consumption by crayfishes. Stable isotope profiles indicated that both species of crayfish were omnivorous and had a trophic position between those of other invertebrate consumers and fishes. Isotope profiles demonstrated that lower quality foods such as leaf litter, periphyton and fine particulate organic matter made up a larger proportion of the diets of both species than did animal material and that fish comprised approximately 12% of the diet of both crayfishes; this percentage was less variable than that of other food types. Gut content analysis corroborated stable isotope results in finding a similar percent occurrence of fish matter in both species. Our results suggest that the consumption of fish by crayfishes is often underestimated or ignored.
QTL Mapping and Inheritance of Clubroot Resistance Genes Derived From Brassica rapa subsp. rapifera (ECD 02) Reveals Resistance Loci and Distorted Segregation Ratios in Two F2 Populations of Different Crosses

In this study, Brassica rapa subsp. rapifera (ECD 02) which exhibits broad-spectrum resistance to many Canadian Plasmodiophora brassicae isolates was crossed with two clubroot-susceptible B. rapa accessions to produce two F2 populations. The F2 plants were screened against P. brassicae pathotypes 3H, 5X, and 5G. The Chi-square goodness of fit test showed that the vast majority (≈75%) of the crosses that produced the F2 populations showed segregation ratios of 9R:7S, 7R:9S, 13R:3S, 3R:13S, 5R:11S, 11R:5S, and 1R:15S. These were modifications of the 15R:1S ratio expected for the inheritance of two dominant major clubroot resistance (CR) genes from ECD 02. The distorted segregation ratios suggest that the two resistance genes are on different chromosomes and that two genes interact in an epistatic manner to confer resistance. Genotyping was conducted with 144 PCR-based markers in the two F2 populations. Linkage and QTL analysis with the polymorphic markers identified two QTLs on chromosome A03 to be associated with resistance to P. brassicae pathotypes 5X and 5G in Popl#1 while only the second QTL on chromosome A03 was associated with resistance to pathotypes 5X and 5G in Popl#2. The QTLs clustered in genomic regions on the A03 chromosome of B. rapa where the CRa/CRbKato gene(s) are mapped. In addition, the Crr1 gene on the A08 chromosome of B. rapa was detected in the two F2 populations. Therefore, the phenotypic and molecular data confirm the existence of two CR genes in ECD 02. This is the first study that shows that major dominant genes in Brassica interact in a non-additive manner to confer resistance to different P. brassicae pathotypes. Key Message: This study provides knowledge on the inheritance and type of gene action for clubroot resistance derived from Brassica rapa subsp. rapifera (ECD 02). The results indicated that duplicate recessive and recessive suppression epistatic interactions, digenic additivity and complementary gene action between the CRa/CRbKato gene(s) on the A03 and the Crr1 gene on the A08 chromosome of B. rapa controlled clubroot resistance to P. brassicae pathotypes 3H, 5X and 5G.
A national effectiveness trial of an eHealth program to prevent alcohol and cannabis misuse: responding to the replication crisis

Abstract Background The burden of disease attributable to alcohol and other drug (AOD) use in young people is considerable. Prevention can be effective, yet few programs have demonstrated replicable effects. This study aimed to replicate research behind Climate Schools: Alcohol and Cannabis course among a large cohort of adolescents. Methods Seventy-one secondary schools across three States participated in a cluster-randomised controlled trial. Year 8 students received either the web-based Climate Schools: Alcohol and Cannabis course (Climate, n = 3236), or health education as usual (Control, n = 3150). Outcomes were measured via self-report and reported here for baseline, 6- and 12-months for alcohol and cannabis knowledge, alcohol, cannabis use and alcohol-related harms. Results Compared to Controls, students in the Climate group showed greater increases in alcohol- [standardised mean difference (SMD) 0.51, p < 0.001] and cannabis-related knowledge (SMD 0.49, p < 0.001), less increases in the odds of drinking a full standard drink[(odds ratio (OR) 0.62, p = 0.014], and heavy episodic drinking (OR 0.49, p = 0.022). There was no evidence for differences in change over time in the odds of cannabis use (OR 0.57, p = 0.22) or alcohol harms (OR 0.73, p = 0.17). Conclusions The current study provides support for the effectiveness of the web-based Climate Schools: Alcohol and Cannabis course in increasing knowledge and reducing the uptake of alcohol. It represents one of the first trials of a web-based AOD prevention program to replicate alcohol effects in a large and diverse sample of students. Future research and/or adaptation of the program may be warranted with respect to prevention of cannabis use and alcohol harms.
The insulin-like growth factor-I receptor: Implications for the aging process

Aging is associated with decreased levels of growth hormone and both circulating and local levels of insulin-like growth factor-I (IGF-I). The decline in IGF-I has been postulated to be important in both physiological aging and pathological states that are seen with aging. In parallel, inappropriate apoptosis is thought to play a role in some of these same processes. In experimental models, IGF-I signalling through the IGF-I receptor confers a protective effect from apoptosis. This review summarizes the results of studies documenting the IGF-I anti-apoptotic effect in neuronal model systems. The known downstream signalling cascades that mediate this signal are beginning to be elucidated; these include MAP kinase and Akt. In addition, IGF-I prevents the reduction of anti-apoptotic proteins of the bcl-2 family induced by hyperosmotic conditions in cultured neuronal cells. IGF-I has been shown to positively impact on tau, the microtubule-associated protein, possibly preventing the degradation of proteins tha.
The photoreceptor system in the retinae of two dogfishes, Scyliorhinus canicula and Galeus melastomus: possible relationship with depth distribution and predatory lifestyle

The small spotted dogfish Scyliorhinus canicula and the blackmouth dogfish Galeus melastomus, whose depth distributions overlap in the upper part of the slope (c. 500 m depth), where they have access to the same prey community, have well-developed eyes and a pure-rod retina with a single layer of photoreceptors. Interspecific differences in rod outer segment length (L ROS ) within retinal regions were found. In the periphery and the retinal centre G. melastomus showed a L ROS 24 and 30% longer, respectively, than S canicula and, therefore, a potential for increased sensitivity. In both species longer L ROS were always found in correspondence with the retinal centre where the ganglion cell topography formed a horizontal meridian that allowed for better discrimination of the horizon in the visual field. In this area L ROS reached 53.4 ± 4.1 μm in S. canicula and 77.1 ± 10.5 μm in G. melastomus against 46.3 ± 4.2 μm and 61.1 ± 10.1 μm in the retinal periphery. No significant differences were recorded in L ROS and rod density during growth. In both species, a rapid increase of theoretical visual acuity was found to be related to an increase in fish L T and lens size. Visual acuity ranged between 1.7 and 3 cycles degree -1 in S. canicula and 2.4 and 4.2 in G. melastomus. The G. melastomus rod visual pigment showed the characteristic spectral adaptation to vision in deep-water (λ max of 481 nm), but was also well placed to detect the bioluminescence of some of its main prey species. In S. canicula the visual pigment absorption (λ max of 496 nm) was more typical of shallow water living fishes. The opsin sequences of the two visual pigments are discussed and key amino acid sites were identified where sequence changes could be responsible for the spectral absorption differences between the two species. The possible relationship between L ROS , visual acuity, visual pigment absorption, depth distribution and feeding behaviour are discussed.
Efficacy of Chlorine in Controlling Five Common Plant Pathogens

Recycled irrigation water is one of the major sources of inoculum and may spread plant pathogens throughout the nursery or greenhouse operation. Chlorination is the most economical method of disinfecting water and has been adopted by some North American commercial growers.However, chlorine hasnot beenassessed asadisinfectant for the common plant pathogens Phytophthora infestans, Phytophthora cactorum, Pythium aphanidermatum, Fusarium oxysporum, and Rhizoctonia solani. These pathogens were exposedtofivedifferentinitiallyfree chlorinesolutionconcentrationsrangingfrom0.3to 14 mgL -1 in combination with five contact times of 0.5, 1.5, 3, 6, and 10 min to determine the free chlorine threshold and critical contact time required to kill each pathogen. Results indicated that the free chlorine threshold and critical contact time for control of P. infestans, P. cactorum, P. aphanidermatum, F. oxysporum, and R. solani were 1, 0.3, 2, 14, and 12 mgL -1 for 3, 6, 3, 6, and 10 min, respectively.
Measurement of sensory deficiency in fine touch after stroke during textile fabric stimulation by electroencephalography (EEG)

Sensory deficiency of fine touch limits the restoration of motor functions after stroke, and its evaluation was seldom investigated from a neurological perspective. In this study, we investigated the cortical response measured by electroencephalography (EEG) on the fine touch sensory impairment during textile fabric stimulation after stroke. Both participants with chronic stroke (n = 12, stroke group) and those unimpaired (n = 15, control group) were recruited. To investigate fine touch during textile fabric stimulations, full brain EEG recordings (64-channel) were used, as well as the touch sensation questionnaires based on the American Association of Textile Chemists and Colorists (AATCC) Evaluation Procedure 5. During the EEG measurement, relative spectral power (RSP) and EEG topography were used to evaluate the neural responses toward the fabric stimuli. In the subjective questionnaire, the fine touch for fabric stimuli was rated and represented by 13 different sensation parameters. The correlation between the fine touch evaluated by the EEG and the questionnaire was also investigated. The neural responses of individuals with fine touch impairments after stroke were characterized by a shifted power spectrum to a higher frequency band, enlarged sensory cortical areas and higher RSP intensity (P < 0.05). Asymmetric neural responses were obtained when stimulating different upper limbs for both unimpaired participants and stroke participants (P < 0.05). The fine touch sensation of the stroke participants was impaired even in the unaffected limb. However, as a result of different neural processes, the correlation between the EEG and the questionnaire was weak (r < 0.2). EEG RSP was able to capture the varied cortical responses induced by textile fabric fine touch stimulations related to the fine touch sensory impairment after stroke.
Validation of one-week reliable change methods in cognitively intact community-dwelling older adults

ABSTRACT Objective Reliable change methods can assist the determination of whether observed changes in performance are meaningful. The current study sought to validate previously published standardized regression-based (SRB) equations for commonly administered cognitive tests using a cognitively intact sample of older adults, and extend findings by including relevant demographic and test-related variables known to predict cognitive performance. Method: This study applied previously published SRB prediction equations to 107 cognitively intact older adults assessed twice over one week. Prediction equations were also updated by pooling the current validation sample with 93 cognitively intact participants from original development sample to create a combined development sample. Results: Significant improvements were seen between observed baseline and follow-up scores on most measures. However, few differences were seen between observed follow-up scores and those predicted from these SRB algorithms, and the level of practice effects observed based on these equations were consistent with expectations. When SRBs were re-calculated from this combined development sample, predicted follow-up scores were mostly comparable with these equations, but standard errors of the estimate were consistently smaller. Conclusions: These results help support the validity of of these SRB equations to predict cognitive performance on these measures when repeated administration is necessary over short intervals. Findings also highlight the utility of expanding SRB models when predicting follow-up performance serially to provide more accurate assessment of reliable change at the level of the individual. As short-term practice effects are shown to predict cognitive performance annually, they possess the potential to inform clinical decision-making about individuals along the Alzheimer’s continuum.
DENTITION AND FEEDING NICHE OF ENDOTHIODON (SYNAPSIDA; ANOMODONTIA).

The cranial morphology and extensive dentition of the dicynodont therapsid Endothiodon are different from those of any other dicynodont and it clearly had a different feeding niche. Recently prepared material from Mozambique which has relatively well preserved dentition has revealed that the mode of tooth replacement of Endothiodon differs in the upper and lower jaws. The very high and narrow vaulted palate with a close fitting, pointed lower jaw indicates that Endothiodon had a small mouth with muscular cheeks and extensive cheek pouches, suggesting a browsing feeding niche.
Genome and genomics of schistosomes

Schistosomes infect over 200 million people and 600 million are at risk. Genomics and post-genomic studies of schistosomes will contribute greatly to developing new reagents for diagnostic purposes and new vaccines that are of interest to the biotechnology industry. In this review, the most recent advances in these fields as well as new projects and future perspectives will de described. A vast quantity of data is publicly available, including short cDNA and genomic sequences, complete large genomic fragments, and the mitochondrial genomes of three species of the genus Schistosoma. The physical structure of the genome is being studied by physically mapping large genomic fragments and characterizing the highly abundant repetitive DNA elements. Bioinformatic manipulations of the data have already been carried out, mostly dealing with the functional analysis of the genes described. Specific search tools have also been developed. Sequence variability has been used to better understand the phylogeny of the spe.
Vegetation structure and floristic composition of a tropical dry deciduous forest in Bhadra Wildlife Sanctuary, Karnataka, India

A permanent 2 ha (200 m x 100 m) plot was established for long-term monitoring of plant diversity and dynamics in a tropical dry deciduous forest of Bhadra Wildlife Sanctuary, Karnataka, southern India. Enumeration of all woody plants >= 1 cm DBH (diameter at breast height) yielded a total of 1766 individuals that belonged to 46 species, 37 genera and 24 families. Combretaceae was the most abundant family in the forest with a family importance value of 68.3. Plant density varied from 20 - 90 individuals with an average 35 individuals/quadrat (20 m x 20 m). Randia dumetorum, with 466 individuals (representing 26.7 % of the total density 2 ha(-1)) with species importance value of 36.25, was the dominant species in the plot. The total basal area of the plot was 18.09 m(2) ha(-1) with a mean of 0.72 m(2) quadrat(-1). The highest basal area of the plot was contributed by Combretaceae (12.93 m(2) 2 ha(-1)) at family level and Terminalia tomentosa (5.58 m(2) 2 ha(-1)) at species level. The lowest diameter class (1-10 cm) had the highest density (1054 individuals 2 ha(-1)), but basal area was highest in the 80 - 90 cm diameter class (5.03m(2) 2 ha(-1)). Most of the species exhibited random or aggregated distribution over the plot. This study provides a baseline information on the dry forests of Bhadra Wildlife Sanctuary.
Social functioning in schizotypy: How affect influences social behavior in daily life.

OBJECTIVE Social deficits are already exhibited by people at risk for schizophrenia-spectrum disorders. Technological advances have made passive detection of social deficits possible at granular levels. METHOD In this real-world study, we tested if schizotypy status (high/low) predicted two types of social behavior: (1) being around other people; and (2) actively socializing with others. We also examined if schizotypy influences relationships between social behavior and affect using subjective and objective instruments. RESULTS Our findings revealed that socializing with others was significantly decreased in the high schizotypy group. Positive affect increased in social situations and predicted later social behavior in those low, but not high, in schizotypy. CONCLUSION Decreased social behavior in schizotypy may be explained, in part, by these individuals being less incentivized than their peers to pursue social situations. Future studies should test this explanation in larger samples exhibiting elevated positive, negative, and disorganized schizotypy traits.
Real-Time Fluorescence Imaging Using Indocyanine Green to Assess Therapeutic Effects of Near-Infrared Photoimmunotherapy in Tumor Model Mice

Background: Near-infrared photoimmunotherapy (NIR-PIT) is a cancer therapy that causes an increase in tumor perfusion, a phenomenon termed the super-enhanced permeability and retention effect. Currently, in vivo treatment efficacy of NIR-PIT is observable days after treatment, but monitoring would be improved by more acute detection of intratumor change. Fluorescence imaging may detect increased tumor perfusion immediately after treatment. Methods: In the first experiment, athymic nude mouse models bearing unilateral subcutaneous flank tumors were treated with either NIR-PIT or laser therapy only. In the second experiment, mice bearing bilateral flank tumors were treated with NIR-PIT only on the left-sided tumor. In both groups, immediately after treatment, indocyanine green was injected at different doses intravenously, and mice were monitored with the Shimadzu LIGHTVISION fluorescence imaging system for 1 hour. Results: Tumor-to-background ratio of fluorescence intensity increased over the 60 minutes of monitoring in treated mice but did not vary significantly in control mice. Tumor-to-background ratio was highest in the 1 mg kg−1 and 0.3 mg kg−1 doses. In mice with bilateral tumors, tumor-to-untreated tumor ratio increased similarly. Conclusions: Acute changes in tumor perfusion after NIR-PIT can be detected by real-time fluorescence imaging.
Systematic review: Gastrointestinal ultrasound scoring indices for inflammatory bowel disease.

BACKGROUND AND AIMS Serial measurements of luminal disease activity may facilitate inflammatory bowel disease management. Gastrointestinal ultrasound is an easily performed, non-invasive alternative to other assessment modes. However, its widespread use is limited by concerns regarding validity, reliability, and responsiveness. We systematically identified ultrasound scoring indices used to evaluate inflammatory bowel disease activity and examine their operating characteristics. METHODS Electronic databases were searched from inception to June 14, 2019 using pre-defined terms. Studies that reported on gastrointestinal ultrasound index operating properties in an inflammatory bowel disease population were eligible for inclusion. Study characteristics, index components, and operating property (i.e., validity, reliability, responsiveness, sensitivity, specificity, accuracy, positive predictive value, and negative predictive value) data were extracted. The QUADAS-2 tool was used to examine study-level risk of bias. RESULTS Of the 2610 studies identified, 26 studies reporting on 21 ultrasound indices were included. The most common index components included bowel wall thickness, colour Doppler imaging, and bowel wall stratification. The correlation between ultrasound indices and references standards ranged from r=0.62-0.95 and k=0.40-0.96. Sensitivity, specificity, accuracy, positive predictive value, and negative predictive values ranged from 39%-100%, 63%-100%, 73%-100%, 57%-100%, and 40%-100%, respectively. Reliability and responsiveness data were limited. Most (92%, 24/26) studies received at least one unclear or high risk of bias rating. CONCLUSIONS Several gastrointestinal ultrasound indices for use in inflammatory bowel disease have been developed. Future research should focus on fully validating existing or novel gastrointestinal ultrasound scoring instruments for assessment of Crohn's disease and ulcerative colitis.
Insecticide resistance spectrum and underlying resistance mechanisms in tropical populations of the brown planthopper (Nilaparvata lugens) collected from rice and the wild grass Leersia hexandra

Two sibling species of Nilaparvata lugens sensu lato were collected from cultivated rice (Oryza sativa) and two from the wild grass Leersia hexandra . Strains of the rice-associated species of N. lugens were from populations exposed to insecticide selection pressure over an extended period, while the Leersia -associated species had little prior insecticide exposure. The rice-associated species from Batalagoda, Sri Lanka and Sulawesi, Indonesia both showed low (2- 5-fold) levels of resistance to malathion and propoxur, as measured by increased times to knock-down, and 2- 17-fold resistance to permethrin at the LT50 level compared with the Leersia -associated species from Bogor, Indonesia. The Goan Leersia -associated species had similar levels of susceptibility to malathion, but significantly lower susceptibility to permethrin than the Bogor one. Resistance in the Sri Lankan rice strain of N. lugens increased significantly after malathion selection in the laboratory. The major insecticide resistance mechan.