Miracle-dz/UniFAR-FTUs huggingface dataset:
A Systematic Review of Sleep Measurement in Critically Ill Patients

Background: Clinical trialists and clinicians have used a number of sleep quality measures to determine the outcomes of interventions to improve sleep and ameliorate the neurobehavioral consequences of sleep deprivation in critically ill patients, but findings have not always been consistent. To elucidate the source of these consistencies, an important consideration is responsiveness of existing sleep measures. The purpose of an evaluative measure is to describe a construct of interest in a specific population, and to measure the extent of change in the construct over time. This systematic literature review identified measures of sleep quality in critically ill adults hospitalized in the Intensive Care Unit (ICU), and assessed their measurement properties, strengths and weaknesses, clinical usefulness, and responsiveness. We also recommended modifications, including new technology, that may improve clinical usefulness and responsiveness of the measures in research and practice. Methods: CINAHAL, PubMed/Medline, and Cochrane Library were searched from January 1, 2000 to February 1, 2020 to identify studies that evaluated sleep quality in critically ill patients. Results: Sixty-two studies using polysomnography (PSG) and other electroencephalogram-based methods, actigraphy, clinician observation, or patient perception using questionnaires were identified and evaluated. Key recommendations are: standard criteria are needed for scoring PSG in ICU patients who often have atypical brain waves; studies are too few, samples sizes too small, and study duration too short for recommendations on electroencephalogram-based measures and actigraphy; use the Sleep Observation Tool for clinician observation of sleep; and use the Richards Campbell Sleep Questionnaire to measure patient perception of sleep. Conclusions: Measuring the impact of interventions to prevent sleep deprivation requires reliable and valid sleep measures, and investigators have made good progress developing, testing, and applying these measures in the ICU. We recommend future large, multi-site intervention studies that measure multiple dimensions of sleep, and provide additional evidence on instrument reliability, validity, feasibility and responsiveness. We also encourage testing new technologies to augment existing measures to improve their feasibility and accuracy.
Comparative Analysis of the Fecal Microbiota of Wild and Captive Beal’s Eyed Turtle (Sacalia bealei) by 16S rRNA Gene Sequencing

The Beal’s eyed turtle (Sacalia bealei) is threatened with extinction due to hunting for large-scale trade. In Hong Kong, there are some of the world’s remaining wild populations of S. bealei, as well as a breeding colony. This breeding colony is at the core of conservation efforts (captive breeding, reintroduction programs). Therefore, we would like to know how captivity, in particular diet, affects the gut microbiota. Using high-throughput 16S rRNA gene sequencing, we comparatively analyzed the fecal microbiota of wild and captive S. bealei. We found that wild S. bealei have higher alpha diversity than captive S. bealei, but the difference was not significant. Significant differences were found in β-diversity; at the phylum level, wild S. bealei have higher relative abundances of Proteobacteria and captive S. bealei have higher relative abundances of Firmicutes. At the genus level, Cetobacterium and Citrobacter are more abundant in wild S. bealei, while Clostridium spp. are significantly more abundant in captive S. bealei. These results suggest conditions in captivity, with diet being a major factor, influence the gut microbiota of S. bealei. The connection between diet and health has always been considered for captive animals, and in this study we use the gut microbiota as an another tool to assess health.
Protective Effect of Some Egyptian Medicinal Plants Against Oxidative Stress in Rats

This study aimed to evaluate the antioxidant effect of two herbal plant ethanolic extracts, Moringa Oleifera and Sweet Marjoram against paracetamol-induced toxicity in male albino rats. The study was conducted on 64 male albino rats (150200 g) classified into eight groups each of 8. The first group received only 0.5 ml of distilled water/day and was served as control. The second, third and fourth groups were administered Moringa Oleifera or Sweet Marjoram alone or in combination at a dose of 250mg/kg/day. Paracetamol drug was added as powder to rat diet of the fifth group as 3000 ppm. The sixth, seventh and eighth groups were given paracetamol as 3000 ppm in diet in addition to Moringa, Marjoram or Moringa+Marjoram respectively. All treatments were administered daily for one month. The results clarified that paracetamol toxicity resulted in significant adverse effects on hematological, serum biochemical and oxidant-antioxidant status as well as histopathological picture of liver and kidney. Moringa and Marjoram successfully improved the undesirable effects of paracetamol and restored almost all variables to near their control levels. It was concluded that oxidative stress appeared to contribute in the pathogenesis of paracetamol-induced toxicity in rats and using Moringa and Marjoram herbal extracts as natural supplementary herbs beside their health benefits can protect against oxidative damage caused by paracetamol.
Association Between REM Sleep Behavior Disorder and Cognitive Dysfunctions in Parkinson's Disease: A Systematic Review and Meta-Analysis of Observational Studies

Background: Rapid eye movement sleep behavior disorder (RBD) is thought to be a prodromal symptom of Parkinson's disease (PD). RBD is also thought to be involved in cognitive decline and dementia in PD. In PD, although the relationship between RBD and cognitive dysfunctions was confirmed by considerable studies, whether RBD was associated with distinct types of cognitive defects is worth of study. Objectives: This systematic review summarizes the evidence relating to cognitive dysfunction in PD patients with RBD (PD-RBD) and those without and explores their specificity to cognitive domains. Methods: A meta-analysis using a random-effects model was performed for 16 different cognitive domains, including global cognitive function, memory (long-term verbal recall, long-term verbal recognition, long-term visual recall, short-term spatial recall, and short-term verbal recall), executive function (general, fluid reasoning, generativity, shifting, inhibition, and updating), language, processing speed/complex attention/working memory, visuospatial/constructional ability, and psychomotor ability. The cognitive difference between the groups of patients was measured as a standardized mean difference (SMD, Cohen's d). PD-RBD patients were classified into Confirmed-RBD (definite diagnosis with polysomnography, PSG) and Probable-RBD (without PSG re-confirmation). In some domains, RBD patients could not be analyzed separately due to the exiguity of primary studies; this analysis refers to such RBD patients as “Mixed-RBD. ” Results: Thirty-nine studies with 6,695 PD subjects were finally included. Confirmed-RBD patients showed worse performance than those without in global cognitive function, long-term verbal recall, long-term verbal recognition, generativity, inhibition, shifting, language, and visuospatial/constructional ability; Probable-RBD, in global cognitive function and shifting; and Mixed-RBD, in long-term visual recall, short-term spatial recall, general executive function, and processing speed/complex attention/working memory. Conclusion: This meta-analysis strongly suggests a relationship between RBD, Confirmed-RBD in particular, and cognitive dysfunctions in PD patients. Early and routine screening by sensitive and targeted cognitive tasks is necessary for all PD-RBD patients because it may offer the therapeutic time window before they evolve to irreversible dementia.
Perceived Social Support Protects Lonely People Against COVID-19 Anxiety: A Three-Wave Longitudinal Study in China

The isolation necessary to prevent the spread of the coronavirus disease 2019 (COVID-19) can give rise to anxiety, especially for lonely people who often feel upset without others’ company. Although isolated from others, people can still receive support from others, which might lower their COVID-19 anxiety. To examine the relationship between loneliness, perceived social support, and anxiety, we measured 222 Chinese participants’ (54.50% female, Mage = 31.53, SD = 8.17) trait loneliness, chronic anxiety before the outbreak, COVID-19 anxiety at the peak and decline stages of COVID-19, and their perceived social support across the three time points. The results showed that people’s perceived social support dramatically increased from the pre-pandemic to the peak COVID-19 stage, and remained stable during the decline of COVID-19 stage. In contrast, COVID-19 anxiety decreased from the peak to the decline stage. Further, perceived social support consistently moderated the relationship between loneliness with both chronic anxiety and COVID-19 anxiety. The current study provides initial evidence that perceived social support provides protection for lonely people in daily life as well as during unexpected disasters, which will contribute to finding ways to alleviate lonely people’s anxiety during this global health crisis.
Identification of Novel BRCA1 and RAD50 Mutations Associated With Breast Cancer Predisposition in Tunisian Patients

Background Deleterious mutations on BRCA1/2 genes are known to confer high risk of developing breast and ovarian cancers. The identification of these mutations not only helped in selecting high risk individuals that need appropriate prevention approaches but also led to the development of the PARP-inhibitors targeted therapy. This study aims to assess the prevalence of the most frequent BRCA1 mutation in Tunisia, c.211dupA, and provide evidence of its common origin as well as its clinicopathological characteristics. We also aimed to identify additional actionable variants using classical and next generation sequencing technologies (NGS) which would allow to implement cost-effective genetic testing in limited resource countries. Patients and Methods Using sanger sequencing, 112 breast cancer families were screened for c.211dupA. A set of patients that do not carry this mutation were investigated using NGS. Haplotype analysis was performed to assess the founder effect and to estimate the age of this mutation. Correlations between genetic and clinical data were also performed. Results The c.211dupA mutation was identified in 8 carriers and a novel private BRCA1 mutation, c.2418dupA, was identified in one carrier. Both mutations are likely specific to North-Eastern Tunisia. Haplotype analysis supported the founder effect of c.211dupA and showed its recent origin. Phenotype-genotype correlation showed that both BRCA1 mutations seem to be associated with a severe phenotype. Whole Exome Sequencing (WES) analysis of a BRCA negative family revealed a Variant of Unknown Significance, c.3647C > G on RAD50. Molecular modeling showed that this variant could be classified as deleterious as it is responsible for destabilizing the RAD50 protein structure. Variant prioritization and pathway analysis of the WES data showed additional interesting candidate genes including MITF and ANKS6. Conclusion We recommend the prioritization of BRCA1-c.211dupA screening in high risk breast cancer families originating from the North-East of Tunisia. We also highlighted the importance of NGS in detecting novel mutations, such as RAD50-c.3647C > G. In addition, we strongly recommend using data from different ethnic groups to review the pathogenicity of this variant and reconsider its classification in ClinVar.
Lymphoma of the Sublingual Gland: Clinical, Morphological, Histopathological, and Genetic Characterization

Background: Lymphoma of the sublingual gland is rare, representing 1% of all salivary gland lymphomas. In this case report, we present three new cases and compare them to previously published cases, with the aim of characterizing the clinical, morphological, histopathological, and genetic features of this type of malignancy. Materials and Methods: We provide a clinical description of three cases along with a characterization of the microscopic features, including morphology, and immunohistochemistry. In addition, we analysed possible cytogenetic rearrangements with the use of fluorescence in situ hybridization (FISH). Results: Case 1: A 61-year-old male presenting with a painless swelling of the floor of the mouth diagnosed as extranodal marginal zone lymphoma (EMZL) of the left sublingual gland. The patient is alive with no evidence of disease after his fourth treatment regimen following several relapses. Case 2: A 68-year-old female with a prior history of mantle cell lymphoma (MCL) presenting with a tender swelling of the left sublingual gland as well as the right submandibular gland. The lesions were diagnosed as relapsing MCL. The patient died of unrelated causes after 18 months of treatment. Case 3: A 75-year-old female presenting with a swelling of the floor of the mouth diagnosed as follicular lymphoma (FL) of the left sublingual gland. The patient received chemotherapy along with radiotherapy and was still alive 10 years after the diagnosis. Conclusion: The three cases of sublingual gland lymphomas presented in this case report resemble lymphomas of other major salivary glands. The clinician should be aware of this type of malignancy and that the clinical presentation may not differ from benign lesions or other more common malignancies in this location.
The Effect of Hydrated Sodium Calcium Aluminosilicate on Fatty Liver and the Composition of the Intestinal Microbiota in Overfed Landes Geese

Goose fatty liver is a delicious food product and the overfeeding will cause the abnormal physiology of the geese. The objective of this study was to investigate the effect of supplementation with hydrated sodium calcium aluminosilicate (HSCAS) on the fatty liver, ileal and cecal microbiota of Landes geese during overfeeding. Sixty 70-day-old Landes geese (body weight= 3.0 ± 0.05 kg) were randomly divided into three groups, two of which were overfed with whole corn supplemented with or without HSCAS for 20 days when the fatty liver reaches to the maximum size and the negative control group was ad libitum access to the corn basal diet. The intestinal contents of the ileum and cecum from three geese per group were used for high-throughput sequencing. As a result of this study, the HSCAS-treatment led to an increase in relative liver weight (p<0.05) of geese compared with the overfeeding control group. The richness and diversity of the bacterial communities decreased in the ileum and ceca after overfeeding. Overfeeding increased the relative abundance of Firmicutes, especially Lactobacillus, in ileal samples. HSCAS supplementation increased the relative abundance of Lactobacillus, and decreased the relative abundance of Actinobacillus in the ileum and the relative abundance of Erysipelotrichi, Bacteroides and Escherichia in the ceca. Bacterial richness indicators were also increased in samples from ileum and ceca after HSCAS supplementation. In conclusion, dietary HSCAS supplementation promoted liver performance in overfed Landes geese. HSCAS treatment had a beneficial effect on the intestinal microbiota composition in geese during the overfeeding.
Maturation, spawning, and larval development in captive yellowfoot limpets (Cellana sandwicensis)

ABSTRACT The yellowfoot limpet (Cellana sandwicensis) is a proposed candidate aquaculture species because of its depleted wild fishery and high socio-economic value. In this study, aquaculture methods were examined for broodstock maturation, synchronous spawning, and larval rearing to settlement in the laboratory. Wild limpets ripened in the laboratory were synchronously spawned in three separate trials (10–13% spawning success) by administering a two-step intramuscular injection of salmon-gonadotropin-releasing-hormone analogue. Fecundity was found to be linearly correlated to weight (p = 0.043), and the most fecund female spawner (24,135 eggs per gram body weight) resulted in 85% fertilization success, 85% hatching success, and 35.4% survival to settlement competency in 22.26 ± 1.32°C and 30 g/L salinity filtered seawater. Larval rearing was completed in stagnant, clear-water vessels; and rapid development from egg to metamorphic competency occurred over a span of 3.5 days. Late veliger larvae were observed to passively settle, and settlement occurred in the presence of biofilm. To the best of our knowledge, we present the first descriptions of yellowfoot limpet spawning behaviour, as well as larval development (illustrated) across 16 major stages from mature oocyte to postlarva.
Mechanical Properties of Glassy Nanopillars: A Comparative, Computational Study of Size Effects in Nanoglasses and Homogeneous Bulk Glasses

We study the mechanical properties of nanoglass (NG) nanopillars with diameters ranging from 4.5 to 54 nm by means of molecular dynamic simulations and compare the results with those obtained for nanopillars prepared from homogeneous glasses. NG nanopillars of two different types of glasses, namely, Cu64Zr36 and Pd80Si20, were cut from samples prepared by nanoparticle consolidation. The influence of nanopillar diameter on the deformation behavior and strain localization is investigated. Moreover, cyclic loading is used to explore the origin of stress overshoots in the stress–strain curves of NGs. Finally, from the calculated properties, a deformation map for NG and homogeneous glass nanopillars is derived.
Phosphorus Speciation and Bioavailability in the Surface Sediments of Maryland Coastal Bays

ABSTRACT Gurung, D.P.; Chen, N. ; Waguespack, Y. ; Ruby, D.E. ; Ishaque, A.B. , and Chigbu, P., 2020. Phosphorus speciation and bioavailability in the surface sediments of Maryland coastal bays. Journal of Coastal Research, 36(6), 1266–1277. Coconut Creek (Florida), ISSN 0749-0208. Phosphorus (P) is an essential nutrient for phytoplankton growth and biochemical processes. In shallow coastal lagoons, there is strong coupling between water column and sediments in terms of P dynamics. To better understand dynamics and bioavailability of P in Maryland coastal bays (MCBs), surface sediment samples were collected at 13 sites of MCBs in May, August, October, and December in 2013 to assess the major reservoirs using a six-step sequential P extraction procedure. The objectives of this study were (1) to determine the spatial/temporal variations of P species in MCB sediment and to assess the relationship of P species at various locations with material sources and sediment types, and (2) to assess the bioavailability of sedimentary P in the study area. The average percentages of fractions of P of four months (representing four seasons) in surface sediments were Det-P (33.5 ± 4.36%) > total organic P (27.2 ± 3.43%) > Fe-P (13.0 ± 1.36%) > Al-P (12.2 ± 1.25%) > authigenic P (11.1 ± 2.86%) > L.Adsorp-P (3.0 ± 0.38%). On average, bioavailable P in surface sediments accounted for 55.4% of total P and thus represented a significant proportion of the sedimentary P pools in MCBs. Total P (TP) in the surface sediment ranged from 309.8 to 1345.4 µg/g with an average of 874.5 ± 343.3 µg/g. There was a strong positive relationship between TP and sediment grain size (mean phi) such that sites with the finest sediments (clay-silt) closest to the mouths of tributaries had significantly higher TP than sites with coarser grains.
Environmental Drivers of Habitat Use by Hawksbill Turtles (Eretmochelys imbricata) in the Arabian Gulf (Qatar)

Understanding the environmental drivers of movement patterns are critical to the protection, management and recovery of endangered species. The Arabian Gulf is considered to be the hottest marine system in the world and is known for its extreme environmental conditions that pose substantial physiological stress on marine organisms living there. Satellite tags were deployed on hawksbill turtles in the Arabian Gulf and quantitative ecological modeling (i.e., Bayesian state-space models and GAMMs) was used to provide new insights into the ecological basis of observed hawksbill movement and behavior. Hawksbills used a relatively large core area in the southeast Arabian Gulf when transit and area-restricted search behaviors were included. The numerous hotspots identified suggest that important habitat occurs along a large area of the Qatari eastern coastline and into Saudi Arabia. Offshore islands with fringing reef habitat and deep-water habitats near the 30–50 m isobaths were intensely used. Hawksbills made seasonal migrations to deep-water habitat during summer months, typically once SST reached ∼33°C and bottom temperature reached ∼32°C. These data provide valuable information to managers seeking to conserve hawksbills in the region. Our data also provide a context to understand the underlying physiological, energetic and behavioral drivers of hawksbill movement in the Arabian Gulf. Future studies should include the use of biologging devices, benthic surveys, and dietary biomarkers to better understand the seasonal migrations of Arabian Gulf hawksbills to this deep-water region.
GPR183 Regulates Interferons, Autophagy, and Bacterial Growth During Mycobacterium tuberculosis Infection and Is Associated With TB Disease Severity

Oxidized cholesterols have emerged as important signaling molecules of immune function, but little is known about the role of these oxysterols during mycobacterial infections. We found that expression of the oxysterol-receptor GPR183 was reduced in blood from patients with tuberculosis (TB) and type 2 diabetes (T2D) compared to TB patients without T2D and was associated with TB disease severity on chest x-ray. GPR183 activation by 7α,25-dihydroxycholesterol (7α,25-OHC) reduced growth of Mycobacterium tuberculosis (Mtb) and Mycobacterium bovis BCG in primary human monocytes, an effect abrogated by the GPR183 antagonist GSK682753. Growth inhibition was associated with reduced IFN-β and IL-10 expression and enhanced autophagy. Mice lacking GPR183 had significantly increased lung Mtb burden and dysregulated IFNs during early infection. Together, our data demonstrate that GPR183 is an important regulator of intracellular mycobacterial growth and interferons during mycobacterial infection.
Variability of morpho-metric traits and oleaginous biofuel potential of Jatropha curcas L. (Euphorbiaceae) seeds in Burkina Faso

In the recent decades, Jatropha curcas has received attention as a potential source of bio fuel production in many West African countries. To detect performant accessions for improvement and breeding programmes, the degree of variability of morphological traits and oil content of seeds in a large range of accessions were assessed in this study. The morphological traits and oil content of seed of 40 accessions of J. curcas in Burkina and their genetic values and correlation was calculated. The results show a high variability of morphological traits and oil content of seed. The accession has a significant effect on the morphological traits and oil content of seed whereas, phytogeographic zone has no significant effect. The results permitted identification of accessions with interesting morpho-metric parameters and oil content of seed. The results also show positive and significant correlations between seed width and all the morphological traits and the value of genetic parameters indicate that the high variability in seed traits and oil content can be explain by genetic factors. Also, the highest value of genetic gain was observed for the oil content. As a result, there are good opportunities for selection and improvement of traits and seed oil production through selection. Key words: Jatropha curcas, Burkina, diversity, oil content, seed traits, heritability.