Miracle-dz/UniFAR-FTUs huggingface dataset:
QNet: An Adaptive Quantization Table Generator Based on Convolutional Neural Network

The JPEG is one of the most widely used lossy image-compression standards, whose compression performance depends largely on a quantization table. In this work, we utilize a Convolutional Neural Network (CNN) to generate an image-adaptive quantization table in a standard-compliant way. We first build an image set containing more than 10,000 images and generate their optimal quantization tables through a classical genetic algorithm, and then propose a method that can efficiently extract and fuse the frequency and spatial domain information of each image to train a regression network to directly generate adaptive quantization tables. In addition, we extract several representative quantization tables from the dataset and train a classification network to indicate the optimal one for each image, which further improves compression performance and computational efficiency. Tests on diverse images show that the proposed method clearly outperforms the state-of-the-art method. Compared with the standard table at the compression rate of 1.0 bpp, the regression and classification network provide average Peak Signal-to-Noise Ratio (PSNR) gains of nearly 1.2 and 1.4 dB. For the experiment under Structural Similarity Index Measurement (SSIM), the improvements are 0.4% and 0.54%, respectively. The proposed method also has competitive computational efficiency, as the regression and classification network only take 15 and 6.25 milliseconds, respectively, to process a $768 \times 512$ image on a single CPU core at 3.20 GHz.
Differential responses of Brassica oleracea and B. rapa accesions to seven isolates of Peronospora parasitica at the cotyledon stage

Nineteen accessions of Brassica oleracea var. italica (broccoli), 31 of B. oleracea var. botrytis (cauliflower), two of B. oleracea var. capitata (cabbage), three of B. rapa subsp. rapifera (turnip), one of B. rapa subsp. pekinensis (Chinese cabbage), and three of Raphanus sativus (radish) were tested for their response to isolates of Peronospora parasitica (downy mildew) at the cotyledon stage. Of the seven isolates tested, four were from crops of cauliflower in France, two from oilseed rape (B. napus subsp. oleifera) in the UK, and one was from mustard (B. juncea) in India. Twenty-one differential responses to P. parasitica isolates from B. oleracea and two from B. rapa were identified. All Raphanus sativus accessions were resistant to all seven isolates. Accessions for which seedling populations exhibited a heterogeneous reaction to some isolates were classified in a separate category. The differential resistance to P parasitica identified in B. oleracea and B. rapa can be used for future studies of the genetics of the host-pathogen interaction and for breeding for disease resistance.
Effect of N-acetylcysteine on prevention of contrast-associated acute kidney injury in patients with STEMI undergoing primary percutaneous coronary intervention: a systematic review and meta-analysis of randomised controlled trials

Objective Several studies evaluating the preventive effect of N-acetylcysteine (NAC) on contrast-associated acute kidney injury (CA-AKI) among patients with ST segment elevation myocardial infarction (STEMI) undergoing primary percutaneous coronary intervention (PPCI) have suggested inconsistent results and that a systematic review and meta-analysis should be performed. Design Systematic review and meta-analysis. Data sources PubMed, MEDLINE, EMBASE, ClinicalTrials.gov and the Cochrane Central databases were searched from inception to 15 November 2019. Eligibility criteria Randomised controlled trials assessing use of NAC compared with non-use of NAC (eg, placebo) in preventing CA-AKI in patients with STEMI following PPCI were included. Data synthesis Relative risks with 95% CIs were pooled using a random-effects model. Evidence level of conclusions was assessed by Cochrane GRADE measure. Results Seven trials including 1710 patients were identified. Compared with non-use of NAC, use of NAC significantly reduced the incidence of CA-AKI by 49% (risk ratio (RR) 0.51, 95% CI 0.31 to 0.82, p<0.01) and all-cause in-hospital mortality by 63% (RR 0.37, 95% CI 0.17 to 0.79, p=0.01). The estimated effects on the requirement for dialysis (RR 0.61, 95% CI 0.11 to 3.38, p=0.24) were not statistically significant. Trial sequential analysis conﬁrmed the true positive of NAC in reducing risk of CA-AKI. Subgroup analyses suggested that the administration of NAC had greater benefits in patients with renal dysfunction and in those receiving oral administration and higher dosage of NAC. Conclusions NAC intake reduces the risk of CA-AKI and all-cause in-hospital mortality in patients with STEMI undergoing PPCI. The estimated potential benefit of NAC in preventing dialysis was ambiguous, and further high-quality studies are needed. PROSPERO registration number CRD42020155265.
Association between Sarcopenia and Physical Function among Preoperative Lung Cancer Patients

We aimed to investigate the prevalence of sarcopenia using new diagnostic criteria and association of sarcopenia with cardiopulmonary function and physical activity (PA) in preoperative lung cancer patients. The data of 614 patients were obtained from the CATCH-LUNG cohort study. Patients were classified into three groups—normal (n = 520), pre-sarcopenia (n = 60, low skeletal muscle mass index only), and sarcopenia (n = 34, low SMI and strength). Cardiopulmonary function was measured using the 6-min walk test (6MWT), and PA was objectively measured using a wearable device. The adjusted odds ratio (aOR) for a <400-m distance in 6MWT was 3.52 (95% confidence interval (CI) 1.34–9.21) and 6.63 (95% CI 2.25–19.60) in the pre-sarcopenia and sarcopenia groups, respectively, compared to that in the normal group. The aOR (95% CI) for <5000 steps/day was 1.64 (0.65–4.16) and 4.20 (1.55–11.38) in the pre-sarcopenia and sarcopenia groups, respectively, compared to that in the normal group. In conclusion, the prevalence of pre-sarcopenia and sarcopenia was 9.8% and 5.5%, respectively, among preoperative lung cancer patients. Cardiopulmonary function and physical activity were significantly lower in the pre-sarcopenia and sarcopenia groups than in the normal group. Patients with sarcopenia had more robust findings, suggesting the importance of muscle strength and mass.
Comprehensive Analysis of the Glycan Complement of SARS-CoV-2 Spike Proteins Using Signature Ions-Triggered Electron-Transfer/Higher-Energy Collisional Dissociation (EThcD) Mass Spectrometry

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has led to a global pandemic of coronavirus disease 2019 (COVID-19). The spike protein expressed on the surface of this virus is highly glycosylated and plays an essential role during the process of infection. We conducted a comprehensive mass spectrometric analysis of the N-glycosylation profiles of the SARS-CoV-2 spike proteins using signature ions-triggered electron-transfer/higher-energy collision dissociation (EThcD) mass spectrometry. The patterns of N-glycosylation within the recombinant ectodomain and S1 subunit of the SARS-CoV-2 spike protein were characterized using this approach. Significant variations were observed in the distribution of glycan types as well as the specific individual glycans on the modification sites of the ectodomain and subunit proteins. The relative abundance of sialylated glycans in the S1 subunit compared to the full-length protein could indicate differences in the global structure and function of these two species. In addition, we compared N-glycan profiles of the recombinant spike proteins produced from different expression systems, including human embryonic kidney (HEK 293) cells and Spodoptera frugiperda (SF9) insect cells. These results provide useful information for the study of the interactions of SARS-CoV-2 viral proteins and for the development of effective vaccines and therapeutics.
Vibrational Spectroscopy Coupled to a Multivariate Analysis Tiered Approach for Argentinean Honey Provenance Confirmation

In the present work, the provenance discrimination of Argentinian honeys was used as case study to compare the capabilities of three spectroscopic techniques as fast screening platforms for honey authentication purposes. Multifloral honeys were collected among three main honey-producing regions of Argentina over four harvesting seasons. Each sample was fingerprinted by FT-MIR, NIR and FT-Raman spectroscopy. The spectroscopic platforms were compared on the basis of the classification performance achieved under a supervised chemometric approach. Furthermore, low- mid- and high-level data fusion were attempted in order to enhance the classification results. Finally, the best-performing solution underwent to SIMCA modelling with the purpose of reproducing a food authentication scenario. All the developed classification models underwent to a “year-by-year” validation strategy, enabling a sound assessment of their long-term robustness and excluding any issue of model overfitting. Excellent classification scores were achieved by all the technologies and nearly perfect classification was provided by FT-MIR. All the data fusion strategies provided satisfying outcomes, with the mid- and high-level approaches outperforming the low-level data fusion. However, no significant advantage over the FT-MIR alone was obtained. SIMCA modelling of FT-MIR data produced highly sensitive and specific models and an overall prediction ability improvement was achieved when more harvesting seasons were used for the model calibration (86.7% sensitivity and 91.1% specificity). The results obtained in the present work suggested the major potential of FT-MIR for fingerprinting-based honey authentication and demonstrated that accuracy levels that may be commercially useful can be reached. On the other hand, the combination of multiple vibrational spectroscopic fingerprints represents a choice that should be carefully evaluated from a cost/benefit standpoint within the industrial context.
Synthesis, Crystal Structure, and Computational Methods of Vanadium and Copper Compounds as Potential Drugs for Cancer Treatment

Transition metal-based compounds have shown promising uses as therapeutic agents. Among their unique characteristics, these compounds are suitable for interaction with specific biological targets, making them important potential drugs to treat various diseases. Copper compounds, of which Casiopeinas® are an excellent example, have shown promising results as alternatives to current cancer therapies, in part because of their intercalative properties with DNA. Vanadium compounds have been extensively studied for their pharmacological properties and application, mostly in diabetes, although recently, there is a growing interest in testing their activity as anti-cancer agents. In the present work, two compounds, [Cu(Metf)(bipy)Cl]Cl·2H2O and [Cu(Impy)(Gly)(H2O)]VO3, were obtained and characterized by visible and FTIR spectroscopies, single-crystal X-ray diffraction, and theoretical methods. The structural and electronic properties of the compounds were calculated through the density functional theory (DFT) using the Austin–Frisch–Petersson functional with dispersion APFD, and the 6-311 + G(2d,p) basis set. Non-covalent interactions were analyzed using Hirshfeld surface analysis (HSA) and atom in molecules analysis (AIM). Additionally, docking analysis to test DNA/RNA interactions with the Casiopeina-like complexes were carried out. The compounds provide metals that can interact with critical biological targets. In addition, they show interesting non-covalent interactions that are responsible for their supramolecular arrangements.
Multifactorial Causes of Chronic Mortality in Juvenile Sturgeon (Huso huso)

Simple Summary Sturgeons are species of biological and economic importance. Among them, the beluga sturgeon (Huso huso, Linnaeus, 1758) is the largest freshwater fish and can reach a maximum weight of 1000 kg. Over 80% of existing sturgeon species are endangered, vulnerable, or on the brink of extinction because of their late sexual maturity and long periods between spawning in the wild. Many species of sturgeon are being reared to increase natural populations or produced for consumption as human food. Despite considerable global interest in sturgeon aquaculture, there is still a paucity of information on nutrient requirements and utilization and even their general nutrition. The development of sturgeon aquaculture has been accompanied by an increase in disease outbreaks, representing a serious problem. This paper presents an investigation of chronic mortality outbreak. The clinical presentation of diseased sturgeons, which is suggestive of a neurologic condition, was further investigated using various laboratory analyses that excluded the presence of the main viral agents of sturgeons while confirming the presence of both bacteria and mycetes. The pathological findings point out the severe myopathy, depletion of lymphohematopoietic tissue, and signs of degeneration consistent with a suboptimal environmental state. Results from chemical analyses also suggest nutritional imbalance. Abstract This investigation focused on an episode of chronic mortality observed in juvenile Huso huso sturgeons. The examined subjects underwent pathological, microbiological, molecular, and chemical investigations. Grossly severe body shape deformities, epaxial muscle softening, and multifocal ulcerative dermatitis were the main observed findings. The more constant histopathologic findings were moderate to severe rarefaction and disorganization of the lymphohematopoietic lymphoid tissues, myofiber degeneration, atrophy and interstitial edema of skeletal epaxial muscles, and degeneration and atrophy of the gangliar neurons close to the myofibers. Chemical investigations showed a lower selenium concentration in affected animals, suggesting nutritional myopathy. Other manifestations were nephrocalcinosis and splenic vessel wall hyalinosis. Septicemia due to bacteria such as Aeromonas veronii, Shewanella putrefaciens, Citrobacter freundii, Chryseobacterium sp. , and pigmented hyphae were found. No major sturgeon viral pathogens were detected by classical methods. Next-generation sequencing (NGS) analysis confirmed the absence of viral pathogens, with the exception of herpesvirus, at the order level; also, the presence of Aeromonas veronii and Shewanella putrefaciens was confirmed at the family level by the metagenomic classification of NGS data. In the absence of a primary yet undetected biological cause, it is supposed that environmental stressors, including nutritional imbalances, may have led to immune system impairment, facilitating the entry of opportunistic bacteria and mycotic hyphae.
Tiller Development and Growth in Switchgrass

Switchgrass, Panicum virgatum (L), grows over a sizable portion of the United States and is a major species in the tall grass prairie. Various ecotypes grow throughout the Southeast but few data are available that characterize growth of the plants. Switchgrass is a highly variable species, and if more were known about its growth, possibly selections could be made that would make useful additions to the forage resources. In the South, switchgrass shoots start rapid growth in March, and early grazing could significantly reduce the need for stored feed by cattle producers. Tolerance of switchgrass to clipping is lower than that advocated for other grasses, as Bahiagrass (Paspalurn notatum Flugge) (Sampaio and Beaty 1976) or Bermudagrass (Cynodon dactylon Poir) (Ethredge et al. 1973). After growing as a rhizome for one season, a switchgrass tiller emerges in March and produces leaves in a rosette in April and May. After a number of leaves have been initiated, the lower internode begins to elongate and successive internodes up the shoot elongate in turn until the inflorescence is produced. Accessions differ in the length of time required for inflorescence emergence and in length of the shoot after the inflorescence has elongated (McMillan 1965). Apparently all switchgrass shoots are typical reproductive tillers capable of producing seedheads. The vegetative buds of switchgrass are located at or below the soil surface. A tiller generally emerges from the encircling leaf sheath in one of two ways. In tufted or bunch accessions, first year growth of the rhizomes (potential shoots) is upward within the leaf sheath and first appears externally near the base of the parent lamina (intravaginal branching). The bud may
Dietary Fatty Acids in Postprandial Triglyceride-Rich Lipoproteins Modulate Human Monocyte-Derived Dendritic Cell Maturation and Activation

Dietary fatty acids have been demonstrated to modulate systemic inflammation and induce the postprandial inflammatory response of circulating immune cells. We hypothesized that postprandial triglyceride-rich lipoproteins (TRLs) may have acute effects on immunometabolic homeostasis by modulating dendritic cells (DCs), sentinels of the immunity that link innate and adaptive immune systems. In healthy volunteers, saturated fatty acid (SFA)-enriched meal raised serum levels of granulocyte/macrophage colony-stimulating factor GM-CSF (SFAs > monounsaturated fatty acids (MUFAs) = polyunsaturated fatty acids (PUFAs)) in the postprandial period. Autologous TRL-SFAs upregulated the gene expression of DC maturation (CD123 and CCR7) and DC pro-inflammatory activation (CD80 and CD86) genes while downregulating tolerogenic genes (PD-L1 and PD-L2) in human monocyte-derived DCs (moDCs). These effects were reversed with oleic acid-enriched TRLs. Moreover, postprandial SFAs raised IL-12p70 levels, while TRL-MUFAs and TRL-PUFAs increased IL-10 levels in serum of healthy volunteers and in the medium of TRL-treated moDCs. In conclusion, postprandial TRLs are metabolic entities with DC-related tolerogenic activity, and this function is linked to the type of dietary fat in the meal. This study shows that the intake of meals enriched in MUFAs from olive oil, when compared with meals enriched in SFAs, prevents the postprandial production and priming of circulating pro-inflammatory DCs, and promotes tolerogenic response in healthy subjects. However, functional assays with moDCs generated in the presence of different fatty acids and T cells could increase the knowledge of postprandial TRLs’ effects on DC differentiation and function.
Physical Fundamentals of Biomaterials Surface Electrical Functionalization

This article is focusing on electrical functionalization of biomaterial’s surface to enhance its biocompatibility. It is an overview of previously unpublished results from a series of experiments concerning the effects surface electrical functionalization can have on biological systems. Saccharomyces cerevisiae cells were used for biological experiments. The hydroxyapatite (HAp) specimens were used to investigate influence of structural point defects on the surface electrical charge. Threshold photoelectron emission spectroscopy was used to measure the electron work function of HAp and biologic samples. The density functional theory and its different approximations were used for the calculation of HAp structures with defects. It was shown that the electrical charge deposition on the semiconductor or dielectric substrate can be delivered because of production of the point defects in HAp structure. The spatial arrangements of various atoms of the HAp lattice, i.e., PO4 and OH groups, oxygen vacancies, interstitial H atoms, etc., give the instruments to deposit the electrical charge on the substrate. Immobilization of the microorganisms can be achieved on the even surface of the substrate, characterized with a couple of nanometer roughness. This cells attachment can be controlled because of the surface electrical functionalization (deposition of the electrical charge). A protein layer as a shield for the accumulated surface charge was considered, and it was shown that the protein layer having a thickness below 1 µm is not crucial to shield the electrical charge deposited on the substrate surface. Moreover, the influence of surface charge on the attachment of microorganisms, when the surface roughness is excluded, and the influence of controlled surface roughness on the attachment of microorganisms, when surface charge is constant, were also considered.
Pre-Liver Transplant ROTEM™ Clot Lysis Index Is Associated with 30-Day Mortality, But Is Not a Measure for Fibrinolysis

Complex alterations of the coagulation system in end stage liver disease lead to an increased risk of bleeding and mortality. In the present study, we investigated; 1. the association of pre-liver transplant rotational thrombelastometry (ROTEM™) variables with bleeding as well as 30-day-mortality and 2. the underlying pathophysiology. After approval from the local ethics committee, rotational thrombelastometry variables, conventional laboratory coagulation values, MELD score (model of end-stage liver disease), red blood cell loss, blood product use, coagulation factors, underlying disease, and demographic data were retrospectively analysed. Pre-transplant thrombelastometry clot lysis index (CLI) and MELD were the only variables associated with mortality, bleeding and blood product use, respectively. Mortality was 4.2%, when CLI was <85%, and increased to 25.7% when the CLI was >95%. Multivariate analysis including CLI and MELD score identified the CLI as an independent and the best predictor of 30-day-mortality. Interestingly, the inhibition of fibrinolysis did neither affect CLI nor the association of the variable with mortality. Thus, fibrinolysis can be excluded as the reason for low CLI values. In conclusion, low CLI values measured before the beginning of liver transplantation are associated with reduced bleeding and mortality, but do not indicate fibrinolysis.
A Re-Appraisal of the Effect of Amplitude on the Stability of Interlimb Coordination Based on Tightened Normalization Procedures

The stability of rhythmic interlimb coordination is governed by the coupling between limb movements. While it is amply documented how coordinative performance depends on movement frequency, theoretical considerations and recent empirical findings suggest that interlimb coupling (and hence coordinative stability) is actually mediated more by movement amplitude. Here, we present the results of a reanalysis of the data of Post, Peper, and Beek (2000), which were collected in an experiment aimed at teasing apart the effects of frequency and amplitude on coordinative stability of both steady-state and perturbed in-phase and antiphase interlimb coordination. The dataset in question was selected because we found indications that the according results were prone to artifacts, which may have obscured the potential effects of amplitude on the post-perturbation stability of interlimb coordination. We therefore redid the same analysis based on movement signals that were normalized each half-cycle for variations in oscillation center and movement frequency. With this refined analysis we found that (1) stability of both steady-state and perturbed coordination indeed seemed to depend more on amplitude than on movement frequency per se, and that (2) whereas steady-state antiphase coordination became less stable with increasing frequency for prescribed amplitudes, in-phase coordination became more stable at higher frequencies. Such effects may have been obscured in previous studies due to (1) unnoticed changes in performed amplitudes, and/or (2) artifacts related to inappropriate data normalization. The results of the present reanalysis therefore give cause for reconsidering the relation between the frequency, amplitude, and stability of interlimb coordination.