Miracle-dz/UniFAR-FTUs huggingface dataset:
AN AUTOMATIC VOLUMETRIC SPORE TRAP

A suction trap has been made in which the spores entering a narrow orifice, directed into the wind, are impacted on a Vaseline-coated microscope slide moved across the orifice at 2 mm. /hr. Estimates of spore content of the air can be made, with higher efficiency than by previous traps, at different times of day and thus be more closely correlated with variations in weather. Wind-tunnel tests with spores of Lycopodium clavatum showed maximal and minimal efficiencies of 93.8 and 62.4% respectively, with a suction rate of 10.0 1. /min., in the range of wind speeds from 1.5 to 9.3 m. /sec.
Vegetation Response to Lime and Manure Compost Amendments on Acid Lead/Zinc Mine Tailings: A Greenhouse Study

Land disturbed by mining in China is a serious problem and lead/zinc (Pb/Zn) mine tailings constitute the majority of the metal mine tailings produced in Guangdaong Province, China. A greenhouse study was therefore conducted to evaluate the effects of lime (40, 80, 120, and 160 t/ha) and manure compost (50 and 100 t/ha) amendment on the revegetation of the Pb/Zn mine tailings using Cynodon dactylon (Bermuda grass) and Agropyron elongatum (tall wheatgrass). The results showed that a combination of lime and manure compost amendment together with deionized water leachating was able to increase pH, reduce electrical conductivity and diethylenetraminepentaacetic acid (DTPA)‐extractable concentrations of Zn and Pb in tailings. Using 80 t/ha lime amendment with the supplement of fertilizer or manure compost was able to effectively improve germination of both C. dactylon and A. elongatum. The highest dry weight yields were obtained in tailings receiving 80 t lime/ha and 100 t manure compost/ha for both plant species. Plant tissue analysis showed that lime amendment at 120–160 t/ha reduced Zn accumulation in both shoot and root of C. dactylon. However, this trend was not observed for Pb.
Hypertrophic and Dilated Cardiomyopathy-Associated Troponin T Mutations R130C and ΔK210 Oppositely Affect Length-Dependent Calcium Sensitivity of Force Generation

Length-dependent activation of calcium-dependent myocardial force generation provides the basis for the Frank-Starling mechanism. To directly compare the effects of mutations associated with hypertrophic cardiomyopathy and dilated cardiomyopathy, the native troponin complex in skinned trabecular fibers of guinea pigs was exchanged with recombinant heterotrimeric, human, cardiac troponin complexes containing different human cardiac troponin T subunits (hcTnT): hypertrophic cardiomyopathy-associated hcTnTR130C, dilated cardiomyopathy-associated hcTnTΔK210 or the wild type hcTnT (hcTnTWT) serving as control. Force-calcium relations of exchanged fibers were explored at short fiber length defined as 110% of slack length (L0) and long fiber length defined as 125% of L0 (1.25 L0). At short fiber length (1.1 L0), calcium sensitivity of force generation expressed by −log [Ca2+] required for half-maximum force generation (pCa50) was highest for the hypertrophic cardiomyopathy-associated mutation R130C (5.657 ± 0.019), intermediate for the wild type control (5.580 ± 0.028) and lowest for the dilated cardiomyopathy-associated mutation ΔK210 (5.325 ± 0.038). Lengthening fibers from 1.1 L0 to 1.25 L0 increased calcium sensitivity in fibers containing hcTnTR130C (delta-pCa50 = +0.030 ± 0.010), did not alter calcium sensitivity in the wild type control (delta-pCa50 = −0.001 ± 0.010), and decreased calcium sensitivity in fibers containing hcTnTΔK210 (delta-pCa50 = −0.034 ± 0.013). Length-dependent activation indicated by the delta-pCa50 was highly significantly (P < 0.001) different between the two mutations. We hypothesize that primary effects of mutations on length-dependent activation contribute to the development of the diverging phenotypes in hypertrophic and dilated cardiomyopathy.
Examining the mechanisms underlying the acquisition of animal tool behaviour

Despite major advances in the study of animal tool behaviour, researchers continue to debate how exactly certain behaviours are acquired. While specific mechanisms, such as genetic predispositions or action copying, are sometimes suspected to play a major role in behavioural acquisition, controlled experiments are required to provide conclusive evidence. In this opinion piece, we refer to classic ethological methodologies to emphasize the need for studying the relative contributions of different factors to the emergence of specific tool behaviours. We describe a methodology, consisting of a carefully staged series of baseline and social-learning conditions, that enables us to tease apart the roles of different mechanisms in the development of behavioural repertoires. Experiments employing our proposed methodology will not only advance our understanding of animal learning and culture, but as a result, will also help inform hypotheses about human cognitive, cultural and technological evolution. More generally, our conceptual framework is suitable for guiding the detailed investigation of other seemingly complex animal behaviours.
Get Paid to Program: Evaluating an Employment-Aware After-School Program for High School Women of Color

After-school programs are one of the primary mechanisms used to introduce students to computing. Yet, such programs may leave behind students who need to work after-school jobs and earn an income. In this work we implement and evaluate a 10-week-long after-school program we call "Get Paid to Program", which uses research-based curriculum and pedagogical practices to introduce majority-minority, low-income high school women to computing. We evaluate the impact of this program on students' self-confidence around computing and their interest in STEM and computing careers. We evaluate the program with 30 high school women over two program implementations. Our evaluation shows a significant change in participants' computing self-efficacy. Additionally, we observe a refinement of career interests in computer science, programming, and engineering: participants become more certain of their interest, or lack thereof, after program completion. Interestingly, we find relatively little impact on career interest in other STEM fields, suggesting that computing-specific programs are critical for raising student awareness and interest.
Group Characteristics, Site Fidelity And Seasonal Abundance Of Bottlenosed Dolphins (Tursiops Aduncus) In Jervis Bay And Port Stephens, South-Eastern Australia

Social organisation and abundance of bottlenose dolphins (Tursiops aduncus) in Jervis Bay (JB) and Port Stephens (PS), NSW, were investigated through behavioural/photo-identification surveys between May 1997 and April 2000. Mean group size was significantly larger at JB (12.3 ± 0.87, n =167) compared to PS (6.8 ± 0.37, n = 218). At both sites, groups were significantly larger when calves were present. Group size varied with activity, being smallest when feeding and largest when socialising. While mean group size of feeding dolphins did not vary between sites, travelling and socialising groups were significantly larger in JB. Site fidelity was assigned based on sighting rates and presence across seasons. Sighting rates varied significantly between areas, but the proportion of dolphins categorised as residents, occasional visitors and transients did not. Minimum abundance by season, based on mark-resighting of recognisable individuals, ranged from 61 ± 3.2 to 108 ± 7.1 in JB and 143 ± 8.1 to 160 ± 8.1 in PS. Differences in group size at the two sites may relate to social factors and/or human impacts, while differences in abundance may be associated with habitat size and complexity. The lack of dolphin matches between areas suggests that they represent distinct populations.
Transcriptional and post‐transcriptional regulation of monocyte chemoattractant protein‐3 gene expression in human endothelial cells by phorbol ester andcAMP signalling

Monocyte chemoattractant protein‐3 (MCP‐3) is one of the most broadly active chemokines, potentially inducing chemotaxis of all leucocytic cells. In the present study, we examined the regulation of MCP‐3 mRNA and protein production in endothelial cells by protein kinase C (PKC) activator, phorbol 12‐myristate 13‐acetate (PMA) and cAMP signalling. On stimulation of endothelial cells with 10 n m PMA, MCP‐3 mRNA increased to 300‐fold the basal level at 3 hr and rapidly declined to 0·2‐fold the basal level at 24 hr. PMA‐induced MCP‐3 mRNA and protein production of human endothelial cells were partially inhibited by pretreatment with the adenylate cyclase activator, forskolin, or membrane‐permeable cAMP derivative. The PMA‐induced MCP‐3 mRNA increase was almost abrogated when cells were pretreated with cycloheximide (CHX). Forskolin inhibited the transcription of PMA‐induced MCP‐3 gene expression. Following PMA stimulation for 3 hr, subsequent addition of actinomycin D suppressed the rapid decay of PMA‐induced MCP‐3 mRNA. These results suggest that PMA induces the transcriptional activation of the MCP‐3 gene through de novo protein synthesis and the rapid decay of PMA‐induced MCP‐3 mRNA through de novo synthesis of adenosine/uridine (AU)‐rich element binding proteins and cAMP signalling inhibits the PMA‐induced transcriptional activation of the MCP‐3 gene expression.
In situ Observations of Wave Transformation and Infragravity Bore Development Across Reef Flats of Varying Geomorphology

The character and energetics of infragravity (“IG,” 25 s < period < 250 s) and very-low frequency (“VLF,” period > 250 s) waves over coral reef flats can enhance shoreline erosion or accretion, and also govern extreme shoreline events such as runup, overwash, and flooding on coral reef-lined coasts. Here we use in situ wave measurements collected along cross-reef transects at 7 sites on Pacific islands with varying reef geomorphologies to examine under what conditions IG waves occur and what factors enhance their irregularity. In general, a greater fraction of total wave energy was transferred to the IG band on reefs with steeper fore reef slopes and shallower reef flats. The IG wave amplitudes scaled with increasing water levels, but it was primarily at lower water levels when these waves became pitched onshore (negatively asymmetrical) and peaked (positively skewed). However, our results also highlight the importance of reef-flat width and slope as important morphological controls on IG waves, as the most asymmetric, bore-like, IG waves occurred on the wider reef flats, and the most skewed IG waves at the site with the steepest reef-flat. On the wider reef flats, IG wave-wave capture was observed during periods of large offshore wave forcing and enhanced VLF wave energy. Because similar IG wave motions over plane beaches enhance sea-swell (“SS,” period < 25 s) bore-merging in the surf zone, we posit that VLF waves over reef flats may facilitate IG bore merging, and this may lead to larger, more pitched-onshore bores at the shoreline. In addition, greater IG wave heights appear to support the transmission of larger secondary short-period waves over the reef flat, independent of overall water levels. As irregular IG waves may be strong drivers of cross-reef sediment transport as well as runup, understanding the conditions and reef geomorphologies that lead to low-frequency, energetic bores on reef flats is critical to forecasting how coral reef-lined coasts will respond to sea-level rise and climate change.
Return-To-Play Decision Making in Team Sports Athletes. A Quasi-Naturalistic Scenario Study

Competitive athletes act within cultures of risk in sports and often decide to return to sport despite having acute health problems. The outcomes of such risky return-to-play decisions can not only negatively affect their future health, but may also limit their sports performance or even upset their career paths. Following risk-management-decision theory with its focus on active risk defusing, we developed a model for understanding the process of return-to-play decision making from an athlete’s perspective. Based on the method of active information search, a quasi-naturalistic return-to-play decision scenario was created in order to assess amateur team sport athletes’ decision-making strategies. The main goals were to identify different information acquisition patterns and to analyze the influence of varying sporting consequences on decision making. A total of 72 competitive team sport athletes (36 females, 36 males, m = 25.7 years of age, 3rd to 6th league level) from three disciplines (volleyball, basketball, and handball) participated in the experimental study. Facing the same medical scenario (a partial tear of the supraspinatus tendon), athletes show different approaches to return-to-play decision making. The main focus is on the potential sporting consequences of withdrawal from competition due to injury, with only a few players favoring well-informed decisions based on thorough risk analysis. The athletes who chose the medically risky alternative to play hurt mostly employed strategies of active risk defusing, which got activated when severe sporting consequences were perceived. Those who chose to withdraw from competition primarily referred to maximin heuristic, particularly when social pressure to play was reduced. The findings can be used to improve rehabilitation-related communication and shared return-to-play decision making in sports.
Promoting a Growth Mindset in CS1: Does One Size Fit All? A Pilot Study

This paper describes a pilot intervention conducted in CS1, in the academic year of 2016-2017. The intervention was based on the work of Dweck, promoting a growth Mindset in an effort to increase performance in introductory programming. The study also examined data from a previous year (as a control group) to compare and contrast the results. Multiple factors related to programming performance were recorded with the control and treatment group, which were measured at multiple intervals throughout the course, to monitor changes as the pilot intervention was implemented. This study found a significant increase in programming performance when the intervention was deployed. However, although performance increased for the treatment group, the average Mindset did not significantly change towards a growth Mindset (replicating the findings of Cutts et al, 2010). To further explore this finding, a preliminary deeper investigation using k-means clustering was carried out. The investigation found that the intervention promoted a growth Mindset for some student profiles and a fixed Mindset for others. This finding is important for educators considering intervention development or implementation of Mindset, and demonstrates that a Mindset intervention may not be suitable for all learners.
A Strategy for Screening and Confirmation of HTLV-1/2 Infections in Low-Endemic Areas

Serological tests have been widely used for detecting human T-cell lymphotropic virus type 1/2 (HTLV-1/2) antibodies in the endemic areas, but their performance in low-risk populations is rarely reported. The aim of this study was to evaluate the performance of four HTLV-1/2 screening assays and to discuss a strategy for diagnosis of HTLV-1/2 infection in a non-endemic area. At the present study, 1546 specimens repeatedly reactive (RR) by one screening ELISA were collected from blood centers/banks from January 2016 to April 2019. Avioq-ELISA, Murex-ELISA, Roche-ECLIA and Fujirebio-CLIA were independently performed on each plasma sample and compared to WB and LIA confirmatory tests. Positive or indeterminate specimens with blood available were quantified by qPCR. The results showed that 48 samples were finally confirmed as HTLV-1 positive, 13 were HTLV positive, 151 were indeterminate, and 387 were negative. All the WB-positive samples were also LIA-positive. Roche-ECLIA showed the highest sensitivity that was able to detect 91.8% positives and combined with the Murex-ELISA would significantly increase the positive detection rate (98.4%). In addition, LIA yield more indeterminate and HTLV-untyped results than WB (152 vs. 27), but was able to resolve infection status of some individuals with an indeterminate WB. Besides, 3 WB indeterminate and 1 LIA-untyped samples were confirmed as HTLV-1 positive by qPCR. Based on these findings, we put forward a proper test strategy for HTLV-1/2 diagnosis in low-prevalence areas. If possible, the Roche-ECLIA with the highest sensitivity is suggested as a second screening assay in primary labs. If not, all RR specimens are recommended to be firstly retested by Roche-ECLIA and Murex-ELISA in the reference lab. Secondly, samples reactive to any one of the two tests were quantified by qPCR, and then the NAT-negatives were furtherly submitted to LIA for confirmation. Thereby, the cost can be reduced and the diagnostic accuracy would be improved.
Disparate Effects of Diabetes and Hyperlipidemia on Experimental Kidney Disease

It is well established that diabetes is the major cause of chronic kidney disease worldwide. Both hyperglycemia, and more recently, advanced glycation endproducts, have been shown to play critical roles in the development of kidney disease. Moreover, the renin-angiotensin system along with growth factors and cytokines have also been shown to contribute to the onset and progression of diabetic kidney disease; however, the role of lipids in this context is poorly characterized. The current study aimed to compare the effect of 20 weeks of streptozotocin-induced diabetes or western diet feeding on kidney disease in two different mouse strains, C57BL/6 mice and hyperlipidemic apolipoprotein (apo) E knockout (KO) mice. Mice were fed a chow diet (control), a western diet (21% fat, 0.15% cholesterol) or were induced with streptozotocin-diabetes (55 mg/kg/day for 5 days) then fed a chow diet and followed for 20 weeks. The induction of diabetes was associated with a 3-fold elevation in glycated hemoglobin and an increase in kidney to body weight ratio regardless of strain (p < 0.0001). ApoE deficiency significantly increased plasma cholesterol and triglyceride levels and feeding of a western diet exacerbated these effects. Despite this, urinary albumin excretion (UAE) was elevated in diabetic mice to a similar extent in both strains (p < 0.0001) but no effect was seen with a western diet in either strain. Diabetes was also associated with extracellular matrix accumulation in both strains, and western diet feeding to a lesser extent in apoE KO mice. Consistent with this, an increase in renal mRNA expression of the fibrotic marker, fibronectin, was observed in diabetic C57BL/6 mice (p < 0.0001). In summary, these studies demonstrate disparate effects of diabetes and hyperlipidemia on kidney injury, with features of the diabetic milieu other than lipids suggested to play a more prominent role in driving renal pathology.
Cryoconite Hole Location in East-Antarctic Untersee Oasis Shapes Physical and Biological Diversity

Antarctic cryoconite holes (CHs) are mostly perennially ice-lidded and sediment-filled depressions that constitute important features on glaciers and ice sheets. Once being hydrologically connected, these microbially dominated mini-ecosystems provide nutrients and biota for downstream environments. For example, the East Antarctic Anuchin Glacier gradually melts into the adjacent perennially ice-covered Lake Untersee, and CH biota from this glacier contribute up to one third of the community composition in benthic microbial mats within the lake. However, biogeochemical features of these CHs and associated spatial patterns across the glacier are still unknown. Here we hypothesized about the CH minerogenic composition between the different sources such as the medial moraine and other zones. Further, we intended to investigate if the depth of the CH mirrors the CH community composition, organic matter (OM) content and would support productivity. In this study we show that both microbial communities and biogeochemical parameters in CHs were significantly different between the zones medial moraine and the glacier terminus. Variations in microbial community composition are the result of factors such as depth, diameter, organic matter, total carbon, particle size, and mineral diversity. More than 90% of all ribosomal sequence variants (RSV) reads were classified as Proteobacteria, Cyanobacteria, Bacteroidetes, Actinobacteria, and Acidobacteria. Archaea were detected in 85% of all samples and exclusively belonged to the classes Halobacteria, Methanomicrobia, and Thermoplasmata. The most abundant genus was Halorubrum (Halobacteria) and was identified in nine RSVs. The core microbiome for bacteria comprised 30 RSVs that were affiliated with Cyanobacteria, Bacteroidetes, Actinobacteria, and Proteobacteria. The archaeal fraction of the core microbiome consisted of three RSVs belonging to unknown genera of Methanomicrobiales and Thermoplasmatales and the genus Rice_Cluster_I (Methanocellales). Further, mean bacterial carbon production in cryoconite was exceptionally low and similar rates have not been reported elsewhere. However, bacterial carbon production insignificantly trended toward higher rates in shallow CHs and did not seem to be supported by accumulation of OM and nutrients, respectively, in deeper holes. OM fractions were significantly different between shallower CHs along the medial moraine and deeper CHs at the glacier terminus. Overall, our findings suggest that wind-blown material originating south and southeast of the Anuchin Glacier and deposits from a nunatak are assumed to be local inoculation sources. High sequence similarities between samples from the Untersee Oasis and other Antarctic sites further indicate long-range atmospheric transport mechanisms that complement local inoculation sources.
Upper tidal flats are disproportionately important for the conservation of migratory shorebirds

Migratory animals play vital ecological roles in ecosystems worldwide, yet many species are threatened by human activities. Understanding the detailed patterns of habitat use throughout the migration cycle is critical to developing effective conservation strategies for these species. Migratory shorebirds undertake some of the longest known migrations, but they are also declining precipitously worldwide. To better understand the dynamics of shorebird declines along the East Asian–Australasian Flyway, we quantified the spatiotemporal foraging distribution of 17 migratory shorebirds at two critical stopover sites. We found that shorebirds exhibit substantial interspecific and site-specific differences in their foraging distributions. Notwithstanding these differences, however, the upper tidal flats appear to be especially important to most shorebirds by providing more than 70% of the birds' cumulative foraging time, twofold greater than their proportional area. Because the upper tidal flats are also more prone to coastal development, our findings may help to explain why shorebird populations along the flyway have declined much faster than the overall rate of tidal flat loss. Our work highlights the importance of protecting upper tidal flats to conserve migratory shorebirds and demonstrates the value of a detailed ecological understanding of habitat usage by migratory animals for conservation planning.