Miracle-dz/UniFAR-FTUs huggingface dataset:
Lower nasopharyngeal viral load during the latest phase of COVID-19 pandemic in a Northern Italy University Hospital

Abstract Objectives A milder clinical course of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection has been anecdotally reported over the latest phase of COVID-19 pandemic in Italy. Several factors may contribute to this observation, including the effect of lockdown, social distancing, lower humidity, lower air pollution, and potential changes in the intrinsic pathogenicity of the virus. In this regard, the clinical severity of COVID-19 could be attenuated by mutations in SARS-CoV-2 genome that decrease its virulence, as well as by lower virus inocula. Methods In this pilot study, we compared the reverse transcription polymerase chain reaction (RT-PCR) amplification profile of 100 nasopharyngeal swabs consecutively collected in April, during the peak of SARS-CoV-2 epidemic, to that of 100 swabs collected using the same procedure in May. Results The mean Ct value of positive samples collected in May was significantly higher than that of samples collected in the previous period (ORF 1a/b gene: 31.85 ± 0.32 vs. 28.37 ± 0.5, p<0.001; E gene: 33.76 ± 0.38 vs. 29.79 ± 0.63, p<0.001), suggesting a lower viral load at the time of sampling. No significant differences were observed between male and females in the two periods, whilst higher viral loads were found in (i) patients over 60-years old, and (ii) patients that experienced severe COVID-19 during the early stages of the pandemic. Conclusions This pilot study prompts further investigation on the correlation between SARS-CoV-2 load and different clinical manifestation of COVID-19 during different phases of the pandemic. Laboratories should consider reporting quantitative viral load data in the molecular diagnosis of SARS-CoV-2 infection.
Bioconversion of cassava wastes for protein enrichment using amylolytic fungi - A preliminary report

Protein enrichment of cassava wastes using three amylolytic fungi was investigated by solid state cultivation for 6 days. Cassava waste provided the only source of carbon in the medium. Other component mineral nutrients were from (HN 4 ) 2 S0 4 , Urea and KHP0 4 . The protein contents of the wastes were improved from 2.03% (w/w) to 6.45, 9.00 and 10.50% (w/w) respectively when treated with Isaccharomyces cerevisiae, Mucor sp and Rhizopus sp . There were improvements in the protein contents to 9.76, 16.30 and 18.05% (w/w) when extra doses of nitrogenous supplements were added after 48 hours of incubation. Increases in moisture contents were equally observed with slight falls in pH values. KEY WORDS: Bioconversion, cassava, enrichment, amyloytic fungi Global Jnl Pure and Applied Sciences Vol.10(4) 2004: 505-507
Multisystem Inflammatory Syndrome in Children in New York State

Abstract Background A multisystem inflammatory syndrome in children (MIS-C) is associated with coronavirus disease 2019. The New York State Department of Health (NYSDOH) established active, statewide surveillance to describe hospitalized patients with the syndrome. Methods Hospitals in New York State reported cases of Kawasaki’s disease, toxic shock syndrome, myocarditis, and potential MIS-C in hospitalized patients younger than 21 years of age and sent medical records to the NYSDOH. We carried out descriptive analyses that summarized the clinical presentation, complications, and outcomes of patients who met the NYSDOH case definition for MIS-C between March 1 and May 10, 2020. Results As of May 10, 2020, a total of 191 potential cases were reported to the NYSDOH. Of 95 patients with confirmed MIS-C (laboratory-confirmed acute or recent severe acute respiratory syndrome coronavirus 2 [SARS-CoV-2] infection) and 4 with suspected MIS-C (met clinical and epidemiologic criteria), 53 (54%) were male; 31 of 78 (40%) were black, and 31 of 85 (36%) were Hispanic. A total of 31 patients (31%) were 0 to 5 years of age, 42 (42%) were 6 to 12 years of age, and 26 (26%) were 13 to 20 years of age. All presented with subjective fever or chills; 97% had tachycardia, 80% had gastrointestinal symptoms, 60% had rash, 56% had conjunctival injection, and 27% had mucosal changes. Elevated levels of C-reactive protein, d-dimer, and troponin were found in 100%, 91%, and 71% of the patients, respectively; 62% received vasopressor support, 53% had evidence of myocarditis, 80% were admitted to an intensive care unit, and 2 died. The median length of hospital stay was 6 days. Conclusions The emergence of multisystem inflammatory syndrome in children in New York State coincided with widespread SARS-CoV-2 transmission; this hyperinflammatory syndrome with dermatologic, mucocutaneous, and gastrointestinal manifestations was associated with cardiac dysfunction.
Male traits under cryptic female choice in the spotted cucumber beetle (Coleoptera: Chrysomelidae)

Males of the spotted cucumber beetle (Diabrotica undecimpunctata howardi) rhythmically stroke females with their antennae during copulation. Males that stroke quickly have a higher probability of being accepted as a mate. We determined (1) the mechanism by which females prevent unattractive males from passing spermatophores, (2) whether antennal stroking signals to females the likelihood of receiving a nuptial gift, and (3) if other male traits in addition to stroking are subjected to sexual selection from female preference. Dissections of pairs flash-frozen in copula during and after antennal stroking showed musculature that, when contracted, folded the vaginal duct leading to the female's bursa copulatrix in a way that prevented complete penetration by the aedeagus. These muscles were always contracted while males were stroking and always relaxed after stroking had ceased. Males accepted as mates did not differ from males that failed to pass a spermatophore in either absolute or relative body weight, aedeagus length, or the amount of cucurbitacins (potential nuptial gifts) sequestered in their spermatophores. Although 99% of the beetles that came to cucurbitacin-rich Cucurbita fruits in the field were males, males that had sequestered cucurbitacins did not stroke females faster than males with no cucurbitacins, and fast-stroking males were not more likely to find and sequester cucurbitacins than were males that stroked more slowly. Males with a cucurbitacin slurry painted on their antennae had no mating advantage over controls. We conclude that females discriminate among males after copulation has begun on the basis of antennal stroking displays (or some trait correlated with stroking speed) that males perform to entice females to relax their bursal sphincter. Copyright 2002.
Artificial Neural Network for Atrial Fibrillation Identification in Portable Devices

Atrial fibrillation (AF) is a common cardiac disorder that can cause severe complications. AF diagnosis is typically based on the electrocardiogram (ECG) evaluation in hospitals or in clinical facilities. The aim of the present work is to propose a new artificial neural network for reliable AF identification in ECGs acquired through portable devices. A supervised fully connected artificial neural network (RSL_ANN), receiving 19 ECG features (11 morphological, 4 on F waves and 4 on heart-rate variability (HRV)) in input and discriminating between AF and non-AF classes in output, was created using the repeated structuring and learning (RSL) procedure. RSL_ANN was created and tested on 8028 (training: 4493; validation: 1125; testing: 2410) annotated ECGs belonging to the “AF Classification from a Short Single Lead ECG Recording” database and acquired with the portable KARDIA device by AliveCor. RSL_ANN performance was evaluated in terms of area under the curve (AUC) and confidence intervals (CIs) of the received operating characteristic. RSL_ANN performance was very good and very similar in training, validation and testing datasets. AUC was 91.1% (CI: 89.1–93.0%), 90.2% (CI: 86.2–94.3%) and 90.8% (CI: 88.1–93.5%) for the training, validation and testing datasets, respectively. Thus, RSL_ANN is a promising tool for reliable identification of AF in ECGs acquired by portable devices.
Validity and Reliability of a New Test of Change of Direction in Fencing Athletes

The aim of this study was to validate a new test of change of direction (COD) for fencer athletes and to establish its relationship with selected measures of physical fitness. Thirty-nine fencer athletes participated to this study (age: 20.8 ± 3.0 years). They performed the new specific fencing COD test (SFCODT) on two separate occasions to establish its reliability. In addition, assessment of COD, jumping ability (i.e., squat jump, countermovement jump, five jump test), sprint time (e.g., 5-m, 10-m and 20-m), isokinetic concentric and eccentric quadriceps, and hamstring force tests were assessed. To establish SFCODT’s construct validity, two subgroups were identified based on their international and national fencing results: High- vs. low-ranked fencer athletes. Reliability, validity, and sensitivity of the SFCODT were established from the intraclass correlation coefficient (ICC), typical error of measurement (TEM), smallest worthwhile change (SWC), and receiving operator characteristic (ROC) analysis. The ICC of SFCODT was excellent at >0.95, and the TEM was < 5%. Based on the usefulness analysis, the ability to detect small performance changes can be rated as “good” in fencer athletes (SWC > TEM). SFCODT was very largely associated with the COD test and moderate to very large associated with jumping ability, sprint time, and isokinetic strength. High-ranked fencer athletes were better than low-ranked fencer athletes on SFCODT (p < 0.01). The area under the ROC curve was 0.76. In conclusion, the SFCODT is a highly reliable, valid, and sensitive test. Therefore, the SFCODT could be used by practitioners to evaluate specific CODS performance in fencer athletes.
The Acid‐Soluble Nucleotides in King Crab Muscle

SUMMARY— Nucleotides in rested king crab muscle were identified as NAD, AMP, GMP, IMP, ADP, UDPAG, UDPG, ATP, GTP and UTP. Of three additional minor nucleotide fractions, two are tentatively thought to contain NAD; the third remains unidentified. The nucleotide profiles of three different leg sections were very similar, with ATP the predominant nucleotide. Average total nucleotide content of these three sections was 3.47 μM/g. Muscle from severely exhausted crabs held frozen overnight contained 0.35 μM/g of IMP. Since king crabs are processed fresh and IMP does not accumulate to a very high level, IMP probably does not play an important role in king crab flavor.
Genetic diversity and phylogenetic analysis of Crimean-Congo Hemorrhagic Fever viruses circulating in Pakistan during 2019

Being an endemic country for Crimean Congo hemorrhagic fever (CCHF), this study aimed to explore the genetic diversity of CCHF virus (CCHFV) detected in Pakistan during 2019. Serum samples from patients with clinical signs of hemorrhagic fever attending tertiary care hospitals in Pakistan were tested for CCHFV RNA using real-time PCR at Department of Virology, National Institute of Health. The partial S-gene fragments were directly sequenced to determine the prevailing CCHFV genotypes and their molecular epidemiology in Pakistan. During January-December 2019, 280 samples from suspected CCHF patients were tested and 28 (10%) were found positive on real-time PCR. Positive cases were detected from 14 districts and across all four provinces of Pakistan with majority reported during August-September. The mean age of CCHFV positive patients was 37.25 years (range 5–65 years) with a high frequency in males (92.8%; n = 26) and a case fatality rate of 40.7% was observed. Phylogenetic analysis showed that S- segment of 2019 PAK CCHFV strains (n = 13) belonged to Asia-1 genotype and clustered with regional strains from Iran, Oman, and Afghanistan. We conclude that Asia-1 genotype of CCHF virus remains endemic in Pakistan. Our findings emphasize to establish a laboratory based surveillance program to monitor the disease burden and identify outbreak hotspots for effective control.
Corner's rules pass the test of time: little effect of phenology on leaf-shoot and other scaling relationships.

BACKGROUND AND AIMS The twig cross-sectional area and the surface area of leaves borne on it are expected to be isometrically correlated across species (Corner's rules). However, how stable this relationship remains in time is not known. We studied the interspecific and intraspecific twig leaf area-cross-sectional area (la-cs) and other scaling relationships, including the leaf-shoot mass (lm-sm) scaling relationship, across a complete growing season. We also examined the influence of plant height, deciduousness and the inclusion of reproductive buds in the stability of the scaling relationships, and we discuss results from a functional perspective. METHODS We collected weekly current-year twigs of 6 Patagonian woody species that differed in growth form and foliar habit. We also used Embothrium coccineum's (Proteaceae) prominent inflorescences to assess whether or not reproductive buds alter the la-cs isometric relationship. Mixed effects models were fitted to obtain parameter estimates and to test whether interaction terms were nonsignificant (invariant) for the scaling relationships. KEY RESULTS The slope of the la-cs scaling relationship remained invariant across the growing season. Two species showed contrasting and disproportional (allometric) la-cs scaling relationships (slope ≠ 1). Scaling relationships significantly varied across growth form and foliar habit. The lm-sm scaling relationship differed between reproductive- and vegetative-origin twigs in E. coccineum, which was explained by a significantly lower leaf mass per area in the former. CONCLUSIONS Although phenology during the growing season appeared not to change leaf-shoot scaling relationships across species, we show that scaling relationships departed from the general trend of isometry as a result of within-species variation, growth form, foliar habit and the type of twig. The identification of these functional factors helps to understand variation in the general trend of Corner's rules.
Comparison of Rapid-Response Systems Across Multisite Locations of a Pediatric Hospital System.

OBJECTIVES Rapid response (RR) systems reduce mortality and cardiopulmonary arrests outside the ICU. Patient characteristics, RR practices, and hospital context and/or mechanism influence post-RR outcomes. We aim to describe and compare RR function and outcomes within our institution's multiple sites. METHODS We conducted a 3-year retrospective study to compare RR use, clinical characteristics, and outcomes between our hospital's central campus (CC) and 2 satellite campuses (SCs). RR training and procedures are uniform across all campuses. RESULTS Among the 2935 RRs reviewed, 1816 occurred during index admissions at the CC and 405 occurred at SCs. CC, when compared with SCs, had higher age at RR (3.2 years vs 1.4 years), prevalence of complex chronic conditions (62.4% vs 34.4%), surgical complications (20.2% vs 5%), severity of illness, and risk of mortality (P < .001). CC had higher daytime RR activations, longer time from admission to RR, and more activations by nurses (P < .001). Respiratory diagnoses were most prevalent uniformly, but cardiac, neurologic, and hematologic diagnoses were higher at CC (P < .001). Cardiac and/or respiratory arrests during RR and transfers to the ICU were similar. Cardiorespiratory interventions post-RR, hospital length of stay, and mortality were higher and ICU stay was shorter (P < .01) in the CC. Outcomes were mainly affected by patient characteristics and not RR factors on multivariate analysis. CONCLUSIONS Patient illness severity, RR characteristics, and outcomes are significantly different in our multisite locations. Outcomes are predominantly affected by patient severity and not RR characteristics. Standardized RR training and procedures likely balance the effect of varying RR characteristics on eventual outcomes.
Organic Functionalized Graphene Oxide Behavior in Water

Surface modified graphene oxide (GO) has received broad interest as a potential platform material for sensors, membranes, and sorbents, among other environmental applications. However, compared to parent (unmodified) GO, there is a dearth of information regarding the behavior of subsequently (secondary) modified GO, other than bulk natural organic matter (NOM) coating(s). Here, we systematically explore the critical role of organic functionalization with respect to GO stability in water. Specifically, we synthesized a matrix of GO-based materials considering a carefully chosen range of bound organic molecules (hydrophobic coatings: propylamine, tert-octylamine, and 1-adamantylamine; hydrophilic coatings: 3-amino-1-propanol and 3-amino-1-adamantanol), so that chemical structures and functional groups could be directly compared. GO (without organic functionalization) with varying oxidation extent(s) was also included for comparison. The material matrix was evaluated for aqueous stability by comparing critical coagulation concentration (CCC) as a function of varied ionic strength and type (NaCl, CaCl2, MgCl2, and MgSO4) at pH 7.0. Without surface derivatization (i.e., pristine GO), increased stability was observed with an increase in the GO oxidation state, which is supported by plate–plate Derjaguin, Landau, Verwey and Overbeek (DLVO) energy interaction analyses. For derivatized GO, we observed that hydrophilic additions (phi-GO) are relatively more stable than hydrophobic organic coated GO (pho-GO). We further explored this by altering a single OH group in the adamantane-x structure (3-amino-1-adamantanol vs. 1-adamantylamine). As expected, Ca2+ and monovalent co-ions play an important role in the aggregation of highly oxidized GO (HGO) and phi-GO, while the effects of divalent cations and co-ions were less significant for pho-GO. Taken together, this work provides new insight into the intricate dynamics of GO-based material stability in water as it relates to surface functionalization (surface energies) and ionic conditions including type of co- and counter-ion, valence, and concentration.
Systematic Review of the Kynurenine Pathway and Psychoneurological Symptoms Among Adult Cancer Survivors

The co-occurrence of multiple psychoneurological symptoms, including pain, sleep disturbance, fatigue, depression, anxiety, and cognitive disturbance among adult cancer survivors led us to question which common biological mechanisms are shared among these conditions. Variances in tryptophan (Trp) levels and downstream metabolites of the kynurenine (Kyn) metabolic pathway are known to affect immune response and psychoneurological symptoms. The objective of this systematic review was to help us (a) better understand the role of the Kyn pathway in psychoneurological symptoms among adult cancer survivors and (b) identify common significant biomarkers across psychoneurological symptoms as a guide for future research. Some evidence has shown that decreased Trp levels and increased Kyn, Trp/Kyn ratio, and kynurenic acid/Trp ratio in parallel with immune activation are correlated with some psychoneurological symptoms among people undergoing cancer treatment, although discrepancies exist between studies. Kyn pathway activation could also be associated with psychoneurological symptoms among adult cancer survivors, but further research is needed to confirm its exact etiological role with respect to psychoneurological symptoms.
All The Same? On a Certain Pattern in Cross‐National Death Risk

This article considers whether a nation that fares relatively well (or badly) on a particular dimension of mortality risk tends also to do so on others. Working with 2016 data from the Global Burden of Disease (GBD) Study, we focus on six causes of premature death: transport accidents, other accidents, homicide, early‐childhood diseases, and both communicable and noncommunicable diseases beyond early childhood. We consider data from all 26 nations that had populations of at least 50 million in 2016, as well as 15 clusters of smaller nations that are similar in longevity (e.g., Scandinavia). We use an analytic method that facilitates useful comparisons across nations, for it recognizes that some potential death risks can be underestimated because citizens die sooner from other causes. We estimate reductions in lifespan from each of the six causes relative to natural lifespan as defined by GBD. It emerges that, for all 15 pairings among the six causes, these reductions are positively correlated. We introduce metrics to summarize a nation's overall “safety status,” and find that losses of longevity because of premature deaths are nearly three decades fewer in the safest countries than in the least safe ones. Turning to possible explanations for the cross‐national differences, we find a strong association between a nation's safety status and both its economic wherewithal as indicated by the 2016 GDP per capita (adjusted for purchasing power parity) and its income inequality as reflected by its Gini coefficient.
Revisited Anatomy of Anther Glands in Mimosoids (Leguminosae)

Premise of research. Anther glands display great morphological diversity and features with potential ecological and taxonomic value in the Mimosoideae group. The current knowledge about these glands is mainly based on external morphological observations, lacking data on the anatomy of the glands. A detailed anatomical study of the glands is a crucial step toward a more comprehensive understanding about these structures because it provides valuable information for further studies about their ontogeny, functions, and homology. Therefore, the goal of this study was to revisit anther gland anatomy in Mimosoideae species to provide a more detailed characterization. Methodology. We investigated anther glands from 25 species of Mimosoideae placed in different clades. Buds immediately preceding anthesis were collected and fixed in neutral buffered formalin solution. Anthers were removed and processed for surface and anatomical analyses. Pivotal results. We found four main types of anther glands in Mimosoideae. The general Piptadenia type is characterized by a stalked gland with rounded apex and includes three subtypes: Piptadenia, characterized by a gland composed of isodiametric cells; Adenanthera, a gland composed of one epidermal layer and isodiametric central cells; and Entada, composed of one epidermal layer that delimits a lumen. The Pentaclethra type is a robust gland composed of a palisade epidermal layer and isodiametric central cells, with vascularized stalk; the Prosopis africana type is a robust sessile and vascularized gland; and, finally, the Gagnebina type is an acuminate gland with elongated cells. Conclusions. The diversity of anther gland morphology lies in both external and anatomical features. Piptadenia subtype Piptadenia occurs in most of the studied species and likely is the common type for Mimosoideae. Glands with anatomical similarity occur in closely related groups, suggesting that the type of anther gland is a character with potential phylogenetic significance.