Miracle-dz/UniFAR-FTUs huggingface dataset:
Acceptability of a Patient Portal (Opal) in HIV Clinical Care: A Feasibility Study

Opal (opalmedapps.com), a patient portal in use at the Cedars Cancer Centre of the McGill University Health Centre (MUHC) (Montreal, Canada), gives cancer patients access to their medical records, collects information on patient-reported outcome measures (PROMs), and has demonstrated patient satisfaction with care. This feasibility study aims to evaluate Opal’s potential acceptability in the context of HIV care. People living with HIV (PLWH) and their healthcare providers (HCPs) completed cross-sectional surveys from August 2019 to February 2020 at large HIV centers, including the Chronic Viral Illness Service of the MUHC, and other HIV clinical sites in Montreal and Paris, France. This study comprised 114 PLWH (mean age 48 years old, SD = 12.4), including 74% men, 24% women, and 2% transgender or other; and 31 HCPs (mean age 46.5 years old, SD = 11.4), including 32% men, 65% women, and 3% other. Ownership of smartphones and tablets was high (93% PLWH, 96% HCPs), and participants were willing to use Opal (74% PLWH, 68% HCPs). Participants were interested in most Opal functions and PROMs, particularly PROMs capturing quality of life (89% PLWH, 77% HCPs), experience of healthcare (86% PLWH, 97% HCPs), and HIV self-management (92% PLWH, 97% HCPs). This study suggests Opal has high acceptability and potential usefulness as perceived by PLWH and HCPs.
Effects of Adiposity and Exercise on Breast Tissue and Systemic Metabo-Inflammatory Factors in Women at High Risk or Diagnosed with Breast Cancer

We report that individuals with high body fat and low exercise levels have breast inflammation, higher breast aromatase expression, and levels of circulating metabo-inflammatory factors that have been associated with increased breast cancer risk. These findings support interventions to lower adiposity, even among normal weight individuals, to prevent tumor growth. Excess body fat and sedentary behavior are associated with increased breast cancer risk and mortality, including in normal weight women. To investigate underlying mechanisms, we examined whether adiposity and exercise impact the breast microenvironment (e.g., inflammation and aromatase expression) and circulating metabo-inflammatory factors. In a cross-sectional cohort study, breast white adipose tissue (WAT) and blood were collected from 100 women undergoing mastectomy for breast cancer risk reduction or treatment. Self-reported exercise behavior, body composition measured by dual-energy x-ray absorptiometry (DXA), and waist:hip ratio were obtained prior to surgery. Breast WAT inflammation (B-WATi) was assessed by IHC and aromatase expression was assessed by quantitative PCR. Metabolic and inflammatory blood biomarkers that are predictive of breast cancer risk and progression were measured. B-WATi was present in 56 of 100 patients and was associated with older age, elevated BMI, postmenopausal status, decreased exercise, hypertension and dyslipidemia (Ps < 0.001). Total body fat and trunk fat correlated with B-WATi and breast aromatase levels (Ps < 0.001). Circulating C-reactive protein, IL6, insulin, and leptin positively correlated with body fat and breast aromatase levels, while negative correlations were observed for adiponectin and sex hormone binding globulin (P < 0.001). Inverse relationships were observed with exercise (Ps < 0.05). In a subgroup of 39 women with normal BMI, body fat levels positively correlated with B-WATi and aromatase expression (Ps < 0.05). In conclusion, elevated body fat levels and decreased exercise are associated with protumorigenic micro- and host environments in normal, overweight, and obese individuals. These findings support the development of BMI-agnostic lifestyle interventions that target adiposity. Prevention Relevance: We report that individuals with high body fat and low exercise levels have breast inflammation, higher breast aromatase expression, and levels of circulating metabo-inflammatory factors that have been associated with increased breast cancer risk. These findings support interventions to lower adiposity, even among normal weight individuals, to prevent tumor growth.
Estrogen receptor alpha in the brain mediates tamoxifen-induced changes in physiology in mice

Adjuvant tamoxifen therapy improves survival in breast cancer patients. Unfortunately, long-term treatment comes with side effects that impact health and quality of life, including hot flashes, changes in bone density, and fatigue. Partly due to a lack of proven animal models, the tissues and cells that mediate these negative side effects are unclear. Here, we show that mice undergoing tamoxifen treatment experience changes in temperature, bone, and movement. Single-cell RNA sequencing reveals that tamoxifen treatment induces widespread gene expression changes in the hypothalamus and preoptic area (hypothalamus-POA). These expression changes are dependent on estrogen receptor alpha (ERα), as conditional knockout of ERα in the hypothalamus-POA ablates or reverses tamoxifen-induced gene expression. Accordingly, ERα-deficient mice do not exhibit tamoxifen-induced changes in temperature, bone, or movement. These findings provide mechanistic insight into the effects of tamoxifen on the hypothalamus-POA and indicate that ERα mediates several physiological effects of tamoxifen treatment in mice.
Perception of Gender Equality Matters: Targets’ Responses to Workplace Sexual Harassment in Chinese Metropolises

Workplace sexual harassment (WSH) has been recognized in the literature as a serious problem for the past 40 years. Since 2017, the global #MeToo movement has fostered local awareness of WSH and inspired researchers in China to pay increasing attention. Guided by the gender empowerment theory, this study investigated the relationships between women’s responses as targets of WSH (e.g., choosing avoidance or confrontation) and both their perceptions of gender equality and their knowledge of the relevant national laws. We used data from a recent large-scale online survey conducted on the topic of sexual harassment among Chinese women in four metropolitan cities in 2018 and selected 862 women who had experienced WSH during the previous 12 months as the study sample. The results revealed that 545 of the respondents chose to show resistance when faced with WSH, while 287 identified their boss as their harasser. In addition, respondents’ perceptions of gender equality and their knowledge of national laws on anti-domestic violence were shown to have positive effects on their responses as targets of WSH. Moreover, monthly income, household registration, and type of WSH were found to be associated with targets’ responses in a statistically significant way, whereas their marital status, educational background, and age were not. Furthermore, the study found that the boss as harasser weakened the relationship between women’s perception of gender equality and their active response to WSH incidents. With this study, we advance our understanding of the important role that perceptions of gender equality play in women’s responses as targets of WSH, and we discuss implications for prevention and intervention efforts that encourage targets to actively respond. We advocate promoting education on gender equality, fostering awareness of the laws and regulations relevant to WSH, and cultivating an organizational culture and environment that is hostile toward WSH.
Facial expression in humans as a measure of empathy towards farm animals in pain

People often express concern for the welfare of farm animals, but research on this topic has relied upon self-report. Facial expressions provide a quantifiable measure of emotional response that may be less susceptible to social desirability bias and other issues associated with self-report. Viewing other humans in pain elicits facial expressions indicative of empathy. Here we provide the first evidence that this measure can also be used to assess human empathetic responses towards farm animals, showing that facial expressions respond reliably when participants view videos of farm animals undergoing painful procedures. Participants (n = 30) were asked to watch publicly sourced video clips of cows and pigs undergoing common management procedures (e.g. disbudding, castration, tail docking) and control videos (e.g. being lightly restrained, standing). Participants provided their subjective rating of the intensity of 5 negative emotions (pain, sadness, anger, fear, disgust) on an 11-point Likert scale. Videos of the participants (watching the animals) were scored for intensity of unpleasantness of the participants’ facial expression (also on an 11-point Likert scale) by a trained observer who was blind to treatment. Participants showed more intense facial expressions while viewing painful procedures versus control procedures (mean ± SE Likert; 2.4 ± 0.08 versus 0.6 ± 0.17). Participants who reported more intense negative responses also showed stronger facial expressions (slope ± SE = 0.4 ± 0.04). Both the self-reported and facial measures varied with species and procedure witnessed. These results indicate that facial expressions can be used to assess human-animal empathy.
Self-assembled liquid crystals by hydrogen bonding between bipyridyl and alkylbenzoic acids: solvent-free synthesis by mechanochemistry

A series of thermotropic hydrogen-bonded liquid crystalline structures based on 4,4′-bipyridyl and aliphatic carboxylic acids was prepared by a mechanosynthesis technique. This series was characterised by polarising optical microscope, differential scanning calorimetry, Fourier transform infrared spectroscopy, X-ray powder diffraction and 1H NMR relaxometry experimental techniques. In these complexes, the bipyridyl component, a non-mesogenic substance by itself, acts as a double H-bond acceptor, whereas the alkylbenzoic acid acts as a H-bond donor, in a 1:2 proportion. The so-formed complexes exhibit mesophases that are not observed by the single components. A characteristic phase (smectic A) is identified and shown to be affected by the alkyl chain length. The isotropisation temperature is increased by the supramolecular aggregation through the H-bonds.
Evaluating the potential efficacy and limitations of a phage for joint antibiotic and phage therapy of Staphylococcus aureus infections

Significance This study explores the potential of a phage, PYOSa, for treating Staphylococcus aureus infections in combination with antibiotics. Population dynamic and genomic analysis identified a limitation and potential liability of using PYOSa for therapy. Due to the production of potentially pathogenic atypical small colony variants, PYOSa alone cannot eliminate S. aureus populations. However, we demonstrate that by following the administration of PYOSa with bactericidal antibiotics, this limitation and potential liability can be addressed. The methods used in this investigation to explore the efficacy of combinations of PYOSa and antibiotics for treating S. aureus infections can be employed to evaluate the clinical potential and facilitate the design of treatment protocols for any bacteria and phage that can be cultured in vitro. In response to increasing frequencies of antibiotic-resistant pathogens, there has been a resurrection of interest in the use of bacteriophage to treat bacterial infections: phage therapy. Here we explore the potential of a seemingly ideal phage, PYOSa, for combination phage and antibiotic treatment of Staphylococcus aureus infections. This K-like phage has a broad host range; all 83 tested clinical isolates of S.aureus tested were susceptible to PYOSa. Because of the mode of action of PYOSa, S. aureus is unlikely to generate classical receptor-site mutants resistant to PYOSa; none were observed in the 13 clinical isolates tested. PYOSa kills S. aureus at high rates. On the downside, the results of our experiments and tests of the joint action of PYOSa and antibiotics raise issues that must be addressed before PYOSa is employed clinically. Despite the maintenance of the phage, PYOSa does not clear populations of S. aureus. Due to the ascent of a phenotyically diverse array of small-colony variants following an initial demise, the bacterial populations return to densities similar to that of phage-free controls. Using a combination of mathematical modeling and in vitro experiments, we postulate and present evidence for a mechanism to account for the demise–resurrection dynamics of PYOSa and S. aureus. Critically for phage therapy, our experimental results suggest that treatment with PYOSa followed by bactericidal antibiotics can clear populations of S. aureus more effectively than the antibiotics alone.
Synthesis, Characterization, and Photocatalytic Activity of Zn-Doped SnO2 Hierarchical Architectures Assembled by Nanocones

Zn-doped SnO2 hierarchical architectures with nanoflower, nanourchin, and nanotrepang morphologies have been synthesized with a surfactant-free solvothermal synthesis route in the mixed solvents of ethylenediamine (En), ethanol, and deionized water. The observations of field emission scanning electron microscopy (FESEM) and transmission electron microscopy (TEM) showed that Zn-doped SnO2 hierarchical architectures with different morphologies were assembled by the nanocones with diameters ranging from 20 to 60 nm. We found that the alkaline dosage (NaOH) of the solution had a remarkable effect on the morphology of as-synthesized products. The UV−visible spectra of Zn-doped SnO2 hierarchical architectures exhibited a blue shift with the decrease of the size of nanocones. The photocatalytic activity of Zn-doped SnO2 samples were evaluated by the degradation of RhB aqueous solution, and the results revealed that the sample with urchin morphology had high photocatalytic activity efficiency. Moreover, the degra.
Three‐month course of intragraft transcriptional changes in kidney allografts with early histological minimal injury – a cohort study

The tubulitis with/without interstitial inflammation not meeting criteria for T‐cell‐mediated rejection (minimal allograft injury) is the most frequent histological findings in early transplant biopsies. The course of transcriptional changes in sequential kidney graft biopsies has not been studied yet. Molecular phenotypes were analyzed using the Molecular Microscope® Diagnostic System (MMDx) in 46 indication biopsies (median 13 postoperative days) diagnosed as minimal allograft injury and in corresponding follow‐up biopsies at 3 months. All 46 patients with minimal injury in early biopsy received steroid pulses. MMDx interpreted indication biopsies as no‐rejection in 34/46 (74%), T‐cell‐mediated rejection (TCMR) in 4/46 (9%), antibody‐mediated rejection in 6/46 (13%), and mixed rejection in 2/46 (4%) cases. Follow‐up biopsies were interpreted by MMDx in 37/46 (80%) cases as no‐rejection, in 4/46 (9%) as TCMR, and in 5/46 (11%) as mixed rejection. Follow‐up biopsies showed a decrease in MMDx‐assessed acute kidney injury (P = 0.001) and an increase of atrophy–fibrosis (P = 0.002). The most significant predictor of MMDx rejection scores in follow‐up biopsies was the tubulitis classifier score in initial biopsies (AUC = 0.84, P = 0.002), confirmed in multivariate binary regression (OR = 16, P = 0.016). Molecular tubulitis score at initial biopsy has the potential to discriminate patients at risk for molecular rejection score at follow‐up biopsy.
A multitaxa assessment of the effectiveness of agri-environmental schemes for biodiversity management

Significance The loss of biodiversity challenges agriculture as crop yields depend on biodiversity-mediated ecosystem services. Targeted agri-environmental schemes (AES), like sown flowering fields, provide additional food resources and shelter for wild plants and animals. Such AES have been implemented to restore biodiversity in agricultural landscapes and ensure ecosystem services provision. However, little is known about the comparative benefits of different AES for functional biodiversity and whether temporal continuity, covered area, or perennial source habitats in the surrounding landscape limit the success of an AES. Here, we systematically evaluate within one study design how temporal continuity, size, and seminatural habitat cover in the surrounding landscape affect multitaxa diversity in different AES types and assess their potential for biodiversity conservation in agricultural landscapes. Agri-environmental schemes (AES) aim to restore biodiversity and biodiversity-mediated ecosystem services in landscapes impoverished by modern agriculture. However, a systematic, empirical evaluation of different AES types across multiple taxa and functional groups is missing. Within one orthogonal design, we studied sown flowering AES types with different temporal continuity, size, and landscape context and used calcareous grasslands as seminatural reference habitat. We measured species richness of 12 taxonomic groups (vascular plants, cicadas, orthopterans, bees, butterflies, moths, hoverflies, flower visiting beetles, parasitoid wasps, carabid beetles, staphylinid beetles, and birds) representing 5 trophic levels. A total of 54,955 specimens were identified using traditional taxonomic methods, and bulk arthropod samples were identified through DNA metabarcoding, resulting in a total of 1,077 and 2,110 taxa, respectively. Species richness of most taxonomic groups, as well as multidiversity and richness of pollinators, increased with temporal continuity of AES types. Some groups responded to size and landscape context, but multidiversity and richness of pollinators and natural enemies were not affected. AES flowering fields supported different species assemblages than calcareous grasslands, but assemblages became more similar to those in seminatural grasslands with increasing temporal continuity. Our results indicate that AES flowering fields and seminatural grasslands function synergistically. Flowering fields support biodiversity even when they are relatively small and in landscapes with few remaining seminatural habitats. We therefore recommend a network of smaller, temporally continuous AES flowering fields of different ages, combined with permanent seminatural grasslands, to maximize benefits for biodiversity conservation and ecosystem service delivery in agricultural landscapes.
The effects of sesame oil and different doses of estradiol on testicular structure, sperm parameters, and chromatin integrity in old mice

Objective Studies of the effects of estrogens on the male reproductive system have emphasized the role of these hormones in male fertility. Sesame oil has many phytoestrogenic compounds and may improve male fertility. This study investigated the effects of sesame oil and different concentrations of estrogen on sperm parameters and DNA integrity in male mice. Methods Twenty old NMRI (The Naval Medical Research Institute) male mice (40 weeks; weight, 30–35 g) were treated with sesame oil or different concentrations of estrogen (estradiol, 1 and 10 μL/kg/day) or received no treatment (controls). After 35 days, sperm parameters and DNA integrity were assessed and analyzed. Results Sperm count, progressive motility, and morphology were decreased in the group that received 10 μL/kg of estradiol. A remarkably lower percentage of DNA fragmentation and protamine deficiency were detected in the group that received 1 μL/kg of estradiol. In the groups that received sesame oil and 1 μL/kg of estradiol, the numbers of spermatogonia and Leydig cells were higher than in controls. The combination of sesame oil and 1 μL/kg of estradiol led to improved sperm parameters and chromatin and testicular structure. Conclusion Based on this study, consumption of sesame oil and a low concentration of estradiol may improve testicular function in older mice.
Contributions of carbonates to soil CO2 emissions

Ramnarine, R. , Wagner-Riddle, C. , Dunfield, K. E. and Voroney, R. P. 2012. Contributions of carbonates to soil CO 2 emissions. Can. J. Soil Sci. 92: 599-607. Carbon dioxide (CO2) is released in soil as a by-product of microbial and root respiration, but soil carbonates may also be a source of CO2 emissions in calcareous soils. Global estimates of inorganic carbon range from 700 to 900 Pg as carbonates stored in soils, representing a significant potential source of CO2 to the atmosphere. While previous studies have focused on the total CO2 efflux from the soil, our goal was to identify the various sources and their contribution to total CO2 emissions, by measuring the isotopic signature of the CO2 emitted from the soil. Calcareous Luvisolic silt loam soil samples were obtained from conventional tillage (CT) and no-tillage (NT) plots in southern Ontario, Canada. Soil samples (root- and residue-free) were laboratory-incubated for 14 d and the isotopic signature of the CO2 (δ13CCO2) released was analyzed using isotope ratio mass spectrometry. Isotopic measurement was essential in quantifying the abiotic CO2 production from carbonates, due to the unique δ13C signature of carbonates and soil organic matter. A two-end member mixing model was used to estimate the proportion of CO2 evolved from soil carbonates and soil organic matter decomposition. Analysis of emitted CO2 collected after the 14-d incubation indicate that the proportion of CO2 originating from soil inorganic carbon was 62 to 74% for CT soil samples, and 64 to 80% for NT soil samples. Further work is recommended in the quantification of CO2 emissions from calcareous soils, and to determine the transferability of laboratory results to field studies.
Factors and health‐related quality of life associated with participation in a post‐ICU follow‐up. A register study

Follow‐up for heterogeneous intensive care patients presents challenges for rehabilitation interventions and outcome measurements. The aim was to describe and explore characteristics and determinants for visiting/not visiting a nurse‐led clinic (NLC) at different time‐points, and to describe physical and mental health (HRQoL) over time.
Latent Profiles of Alcohol Consumption Among College Students Exposed to Trauma

Abstract Background Alcohol use/misuse is a costly public health problem, particularly among college students in the United States. Alcohol use tends to increase during adolescence and peaks in the early/mid-20s; however, there is significant heterogeneity among alcohol use during the college years. Several studies applying a mixture modeling framework to extract latent profiles of alcohol consumption have been conducted. However, none to our knowledge has included only those exposed to trauma, a group known to be at risk for alcohol misuse. The aim of this longitudinal study (n = 1,186) was to identify profiles of alcohol consumption and their associations with demographic and trauma-related constructs. Method Data were collected from a larger study of college students attending a large public university. Participants in the current study were, on average, 18.46 years old at study entry, primarily female (69.6%), and of diverse racial/ethnic backgrounds (e.g., 48.8% White, 20.4% Black, 16.8% Asian). Results Results suggest evidence for four latent profiles. These classes include an initially high increasing, an initially high decreasing, an initially low decreasing, and an initially low increasing, the last of which had not been found. Using analyses of variance, profile membership was associated with number of traumas, probable posttraumatic stress disorder, broad drinking motives, and trauma-specific drinking-to-cope motives. Conclusions Results suggest that drinking motives and trauma-related factors are important correlates of these latent alcohol profiles. Work clarifying the longitudinal interrelations between profile membership and these factors is needed to help inform more effective prevention and intervention efforts.