Miracle-dz/UniFAR-FTUs huggingface dataset:
PII: S0925-4773(00)00467-6

Bmp4 is a downstream gene of Msx1 in early mouse tooth development. In this study, we introduced the Msx1-Bmp4 transgenic allele to the Msx1 mutants in which tooth development is arrested at the bud stage in an effort of rescuing Msx1 mutant tooth phenotype in vivo. Ectopic expression of a Bmp4 transgene driven by the mouse Msx1promoter in the dental mesenchyme restored the expression of Lef-1 and Dlx2 but neither Fgf3 nor syndecan-1 in the Msx1 mutant molar tooth germ. The mutant phenotype of molar but not incisor could be partially rescued to progress to the cap stage. The Msx1-Bmp4 transgene was also able to rescue the alveolar processes and the neonatal lethality of the Msx1 mutants. In contrast, overexpression of Bmp4 in the wild type molar mesenchyme down-regulated Shh and Bmp2 expression in the enamel knot, the putative signaling center for tooth patterning, but did not produce a tooth phenotype. These results indicate that Bmp4 can bypass Msx1 function to partially rescue molar tooth development in vivo, and to support alveolar process formation. Expression of Shh and Bmp2 in the enamel knot may not represent critical signals for tooth patterning. q 2000 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0925-4773(99)00310-X

During the development of the adult central nervous system (CNS) of the fruit ̄y Drosophila melanogaster, the A-isoform of the ecdysone receptor (EcR-A), a typical nuclear hormone receptor, is expressed at high levels in the Type II neurons, a set of neurons that die shortly after the emergence of the adult. To understand the role that transcriptional regulation of nuclear receptor genes plays in CNS development, we have dissected the region controlling the transcription of EcR-A by analyzing the ability of this region to drive the expression of reporter genes in transgenic animals. These analyses have demonstrated that the Type II neurons are a heterogeneous collection of neurons that utilize different regulatory elements to coordinate the expression of the same transcript. q 2000 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0042-6989(97)00443-4

Although trichromacy in Old and New World primates is based on three visual pigments with spectral peaks in the violet (SW, shortwave), green (MW, middlewave) and yellow–green (LW, longwave) regions of the spectrum, the underlying genetic mechanisms differ. The SW pigment is encoded in both cases by an autosomal gene and, in Old World primates, the MW and LW pigments by separate genes on the X chromosome. In contrast, there is a single polymorphic X-linked gene in most New World primates with three alleles coding for spectrally distinct pigments. The one reported exception to this rule is the New World howler monkey that follows the Old World system of separate LW and MW genes. A comparison of gene sequences in these different genetic systems indicates that the duplication that gave rise to the separate MW and LW genes of Old World primates is more ancient than that in the howler monkey. In addition, the amino acid sequences of the two howler monkey pigments show similarities to the pigments encoded by the polymorphic gene of other New World primates. It would appear therefore that the howler monkey gene duplication arose after the split between New and Old World primates and was generated by an unequal crossover that placed two different forms of the New World polymorphic gene on to a single chromosome. In contrast, the lack of identity at variable sites within the New and Old World systems argues for the origin of the separate genes in Old World primates by the duplication of a single form of the gene followed by divergence to give spectrally distinct LW and MW pigments. In contrast, the similarity in amino acid variation across the tri-allelic system of New World primates indicates that this polymorphism had a single origin in New World primates. A striking feature of all these pigments is the use of a common set of substitutions at three amino acid sites to achieve the spectral shift from MW at around 530 nm to LW at around 560 nm. The separate origin of the trichromacy in New and Old World primates would indicate that the selection of these three sites is the result of convergent evolution, perhaps as a consequence of visual adaptation in both cases to foraging for yellow and orange fruits against a green foliage. © 1998 Elsevier Science Ltd. All rights reserved.
PII: S0925-4773(02)00285-X

The interaction between early proneural genes and lateral inhibition determines the number of primary neurons. The mechanism for regulating the size of the proneural domain, however, has not been clarified. We show here that inhibition of the function of XETOR in Xenopus, a homolog of human oncoprotein ETO/MTG8, leads to a neurogenic phenotype of expanded proneural domain without alteration in the density of primary neurons. This result suggests that XETOR is a prerequisite for regulating the size of the proneural domain. We further show that such a regulation is accomplished by establishing a negative feedback loop between XETOR and proneural genes except Xngnr-1, as well as by antagonism between XETOR and lateral inhibition. q 2002 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0925-4773(00)00428-7

The appearance of bottle cells at the dorsal vegetal/marginal boundary of Xenopus embryos marks the onset of blastopore formation. The conditions leading to this epithelial activity were investigated by inducing bottle cells ectopically in the animal region with VegT or different members of the transforming growth factor (TGF)-b family. Morphological studies on the ectopic bottle cells indicate their close similarity to the endogenous bottle cells at the dorsal blastopore lip. The subepithelial cells of the induced animal region express mesodermal genes in a pattern reminiscent to that observed on the dorsal lip. Relating this expression pattern to the position of the ectopic bottle cells leads to the conclusion that bottle cells form in regions of high TGF-b signalling. The speci®c inhibitory effects of cerberus on ectopically induced bottle cells revealed that nodal related growth factors are the intrinsic signals that elicit bottle cell formation in the normal embryo. In addition, ®broblast growth factor signalling is an essential precondition for this epithelial response as it is for mesoderm formation. We conclude that bottle cell formation in the epithelial layer of the gastrula is closely linked to mesodermal patterning in the subepithelial tissues. q 2000 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0925-4773(01)00304-5

We have identi®ed the Xenopus homologue of Drosophila Enhancer of Zeste using a differential display strategy designed to identify genes involved in early anterior neural differentiation. XEZ codes for a protein of 748 amino acids that is very highly conserved in evolution and is 96% identical to both human and mouse EZ(H)2. In common with most other Xenopus Pc-G genes and unlike mammalian Pc-G genes, XEZ is anteriorly restricted. Zygotic expression of XEZ commences during gastrulation, much earlier than other anteriorly localized Pc-G genes; expression is restricted to the anterior neural plate and is con®ned later to the forebrain, eyes and branchial arches. XEZ is induced in animal caps overexpressing noggin; up-regulation of XEZ therefore represents a response to inhibition of BMP signalling in ectodermal cells. We show that the midbrain/hindbrain junction marker En-2,and hindbrain marker Krox-20, are target genes of XEZ and that XEZ functions to repress these anteroposterior marker genes. Conversely, XEZ does not repress the forebrain marker Otx-2. XEZ overexpression results in a greatly thickened ̄oor of the forebrain. These results implicate an important role for XEZ in the patterning of the nervous system. q 2001 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0925-4773(01)00638-4

The Spemann organizer secretes several antagonists of growth factors during gastrulation. We describe a novel secreted protein, Mig30, which is expressed in the anterior endomesoderm of the Spemann organizer. Mixer-inducible gene 30 (Mig30) was isolated as a target of Mixer, a homeobox gene required for endoderm development. The Mig30 gene encodes a secreted protein containing a cysteine-rich domain and an immunoglobulin-like domain that belongs to the insulin-like growth factor-binding protein family. Overexpression of Mig30 in the dorsal region results in the retardation of morphogenetic movements during gastrulation and leads to microcephalic embryos. Overexpression of Mig30 also inhibits activin-induced elongation of ectodermal explants without affecting gene expression patterns in mesoderm and endoderm. These results suggest that Mig30 is involved in the regulation of morphogenetic movements during gastrulation in the extracellular space of the Spemann organizer. q 2002 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0042-6989(98)00222-3

The speed of contour integration was investigated in a task that can be solved by grouping contour segments into elongated curves. Subjects had to detect a continuous curve, which could be intersected by one or two other curves. At locations where these curves came in close proximity, the assignment of contour segments to the different curves could be based on collinearity. Reaction times exhibited a strong dependence on (1) the presence of intersections among curves; and (2) the context provided by the stimulus set from which individual stimuli were selected. Reaction times were shortest when grouping of contour segments depended on information at a single location in the visual field. In this condition, responses to stimuli containing an intersection were faster than responses to stimuli that did not. When responses were determined by information at spatially separate locations, responses were delayed, and every intersection increased the reaction time considerably. This result contrasts with earlier investigations which have suggested that contour integration on the basis of collinearity is performed pre-attentively but is in accordance with studies on curve tracing. We propose that the assignment of contour segments to equally coherent curves, a process which may be called figure–figure segregation, is a function of object-based attention. Moreover, the protracted reaction times for some of the stimuli indicate that spread of attention within an object costs time. This implies that object recognition is not always as fast as is sometimes assumed. © 1999 Elsevier Science Ltd. All rights reserved.
PII: S0925-4773(02)00237-X

Commitment of the germ cell lineage during embryogenesis depends on zygotic gene expression in mammals, but little is known about the signaling molecules required for germ cell formation. Here we show that the intracellular signaling molecule SMAD1, acting downstream of bone morphogenetic protein (BMP) receptors, is required for the commitment of germ cell lineage from epiblast in early mouse embryos. Smad1 homozygous mutant embryos (Smad1 2 /2) were generated by in-frame insertion of lacZ gene into an exon of the Smad1 gene. Most of the Smad1 2 /2 embryos contained no primordial germ cells (PGCs) and had short allantois, while histological analysis and in situ hybridization for the mesoderm marker genes revealed that early mesoderm induction was normal in those embryos. Smad1 expression was observed in epiblast and in visceral endoderm during gastrulation, while only a few alkaline phosphatase-positive PGCs at 7.5 and 8.5 days post coitum (E7.5 and E8.5) expressed Smad1. Phosphorylated SMAD proteins were localized in the proximal region of epiblast at E6.0–6.5, where the progenitors of PGCs and of allantois reside. Single-cell reverse transcription–polymerase chain reaction analysis revealed that the expression of Smad1, -5 and -8 were sporadic and mutually independent in proximal epiblast cells. We also found that BMP4-induced differentiation of PGCs from epiblast in vitro was fully dependent on the existence of phosphorylated SMAD1. These results indicate that SMAD1 signaling possesses a critical and non-redundant function in the initial commitment of the germ cell lineage. q 2002 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0925-4773(02)00046-1

The Drosophila transcription factor Grainyhead regulates several key developmental processes. Three mammalian genes, CP2, LBP-1a and LBP-9 have been previously identified as homologues of grainyhead. We now report the cloning of two new mammalian genes (Mammalian grainyhead (MGR) and Brother-of-MGR (BOM)) and one new Drosophila gene (dCP2) that rewrite the phylogeny of this family. We demonstrate that MGR and BOM are more closely related to grh, whereas CP2, LBP-1a and LBP-9 are descendants of the dCP2 gene. MGR shares the greatest sequence homology with grh, is expressed in tissue-restricted patterns more comparable to grh and binds to and transactivates the promoter of the human Engrailed-1 gene, the mammalian homologue of the key grainyhead target gene, engrailed. This sequence and functional conservation indicates that the new mammalian members of this family play important developmental roles. q 2002 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0925-4773(01)00595-0

Polypyrimidine tract binding protein (PTB) is a member of the hnRNP family of RNA binding proteins (Nucleic Acids Res., 20 (1992) 3671) that functions in a number of processes important for the regulation of mRNA metabolism and gene expression (reviewed in Curr. Biol., 7 (1997) R705). Specifically, PTB binds polypyrimidine-rich intronic elements upstream of alternatively spliced exons to antagonize the binding of the essential U2AF splicing factor and repress the use of the regulated exons in specific tissues (RNA, 1 (1995) 234). Additionally, PTB interacts with elements that mediate 3-prime end processing of nascent transcripts (Mol. Cell. Biol., 19 (1999) 78) and is required for the expression of viral mRNAs that contain an internal ribosome binding site (RNA, 5 (1999) 344; RNA, 1 (1995) 924). Tissuespecific or alternatively spliced isoforms of PTB are thought to have different gene regulatory properties (Proc. Natl Acad. Sci. USA, 97 (2000) 6350; RNA, 7 (2001) 819), but little is known about the function and activity of PTB isoforms during development. Here, we investigate the expression of PTB during Drosophila embryogenesis using in situ hybridization assays. We show that PTB expression is patterned in the early embryo and occurs in specific mesodermal and neuronal lineages as well as in the imaginal discs and adult germline. These data indicate that PTB regulates gene expression in specific tissue lineages during development. q 2002 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0042-6989(01)00115-8

Several recent studies [Farell, B. , & Pelli, D. (1993). Can we attend to large and small at the same time? Vision Research, 33, 2757–72; Shih, S. , & Sperling, G. (1996). Is there feature-based attentional selection in visual search? Journal of Experimental Psychology: Human Perception and Performance, 22, 758–79] have found that visual selection based on the size of stimuli is impossible when the stimuli are presented in rapid succession in overlapping positions (RSVP paradigm). In the present study effective size-based selection is demonstrated in several conditions with RSVP stimuli. Attention to specific size is highly efficient when stimuli are presented in a single location (at fixation point) and may be possible also with a few (2–4) locations. When overlapping small and large characters are presented without abrupt onsets, then selection by size is effective at least over six locations. The results are explained by certain mandatory properties of spatial attention. © 2001 Elsevier Science Ltd. All rights reserved.
PII: S0925-4773(02)00021-7

Olig family is a novel sub-family of basic helix-loop-helix transcription factors recently identified. Olig1 and Olig2 were first reported to promote oligodendrocyte differentiation, and later Olig2 was reported to be involved in motoneuron specification as well. Olig3 was isolated as a third member of Olig family, but its precise expression pattern is poorly understood. Here, we describe detailed Olig3 expression analyses in the neural tube of embryonic mice. Olig3 was first detected in the dorsal neural tube from the midbrain/hindbrain boundary to the spinal cord. In E11.5 spinal cord, Olig3 was transiently expressed in the lateral margin of the subventricular zone as three ventral clusters at the level of the p3, p2 and p0 domains, as well as in the dorsal neural tube. Olig3 was co-expressed with Nkx2.2 in the lateral margin of the p3 domain. In forebrain, Olig3 was expressed in the dorsal thalamus while Olig2 was complementarily expressed in the ventral thalamus with an adjacent boundary at E12.5. Olig3 is specifically and transiently expressed in different types of progenitors of embryonic central nervous system and then disappears in the course of development. q 2002 Elsevier Science Ireland Ltd. All rights reserved.
Xenopus Zicfamily and its role in neural and neural crest development

We characterized two new members of the Zic family, Xenopus Zic1and Zic2. They are very similar to mouse Zic1 and Zic2 in the protein coding region including the zinc finger domain. In early gastrula, Zic1 expression was restricted to the prospective neural plate region whereasZic2 was expressed widely in the ectoderm. We observed enhanced neural and neural crest-derived tissue formation in the Zic1 or Zic2 overexpressed embryos and neural and neural crest marker induction in the Zic1 or Zic2 overexpressed animal cap explants. Our findings suggest that Zic1 andZic2 have essentially the same properties as Zic3 and that theXenopus Zicfamily may act cooperatively in the initial phase of neural and neural crest development.  1998 Elsevier Science Ireland Ltd. All rights reserved
PII: S0925-4773(99)00303-2

The ectoderm of the pre-gastrula Xenopus embryo has previously been shown to be at least partially patterned along the dorsal-ventral axis. The early expression of the anti-neural homeodomain gene Dlx3 is localized to the ventral ectoderm by a mechanism that occurs prior to gastrulation and is independent of the Spemann organizer. The repression of Dlx3 is mediated by signaling though b-catenin, but is probably not dependent on the induction of the Xnr3 or chordin genes by b-catenin. We propose a model in which this early regulation of Dlx3 accounts for the pro-neural bias of dorsal ectoderm. q 2000 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0925-4773(99)00036-2

Eph receptor tyrosine kinases (RTK) and their ephrin ligands are involved in the transmission of signals which regulate cytoskeletal organisation and cell migration, and are expressed in spatially restricted patterns at discrete phases during embryogenesis. Loss of function mutants of Eph RTK or ephrin genes result in defects in neuronal path®nding or cell migration. In this report we show that soluble forms of human EphA3 and ephrin-A5, acting as dominant negative inhibitors, interfere with early events in zebra®sh embryogenesis. Exogenous expression of both proteins results in dose-dependent defects in somite development and organisation of the midbrain-hindbrain boundary and hindbrain. The nature of the defects as well as the distribution and timing of expression of endogenous ligands/receptors for both proteins suggest that Eph-ephrin interaction is required for the organisation of embryonic structures by coordinating the cellular movements of convergence during gastrulation. q 1999 Elsevier Science Ireland Ltd. All rights reserved.
PII: S0925-4773(01)00401-4

Pedibin, a peptide of 21 amino acids, has been shown to stimulate foot formation in hydra, one of the simplest metazoan animals. The data presented here show that pedibin is synthesized as a precursor of 49 amino acids. A putative cleavage site precedes the peptide as puri®ed from hydra tissue. The precursor, like pedibin, accelerates foot regeneration. Pedibin transcripts are concentrated in the foot region of hydra as expected, but are also present in the head region accumulating in the tentacle bases. The early appearance of pedibin transcripts during phases of cell fate speci®cation like budding and regeneration implies that in hydra, pedibin plays an important role in patterning processes of foot and head. This is con®rmed by the ®nding that pedibin also stimulates bud outgrowth. q 2001 Elsevier Science Ireland Ltd. All rights reserved.
Progenitor cells in the adult zebrafish nervous system express a Brn-1-related POU gene , taiji 1

The adult fish brain undergoes continuous neurogenesis and retains the capacity to regenerate. However, the cellular and molecular basis of this process is not well understood. We report on the cloning and characterization of a Brain-1-related, class III POU domain gene, tai-ji , in the developing and adult zebrafish, as well as in a human cell line, hNT2. During development, as differentiation occurs, the expression of tai-ji is downregulated in the notochord, muscle, nervous system and dorsal fin. Similarly, tai-ji is expressed in the human neuronal precursor cell, hNT2, but is downregulated upon differentiation with retinoic acid. In the adult zebrafishnervous system, tai-ji persists in germinal zones, including cells in the germinal zone of the retina, the basal cells of the olfactory epithelium and cells of the subependymal zones in the optic tectum and telencephalon. Subsets of the tai-ji -expressing cells in these regions incorporate BrdU. Most of the tai-ji expressing cells within these regions of the zebrafishbrain are not differentiated and do not express a marker for post-mitotic neurons, acetylated tubulin nor do they express a marker of glial cells, glial acidic fibrillary protein (GFAP). We propose that the majority of the aiji -expressing cells are neural stem or progenitor cell populations that may represent the cellular basis for continuous growth in the adult nervous system.  1998 Elsevier Science Ireland Ltd.
PII: S0042-6989(96)00261-1

This study analyzes grouping between singletons (line elements popping out by orientation gradient) when they segregate from textures of uniformly oriented line elements. In the first experiment three adjacent singletons formed a texture bar; in the second experiment the distance between two singletons to be grouped was manipulated. The observer’s task was to discriminate the orientation of the global pattern made by the singletons. The results and the explanations suggested are that: (i) an inner gradient within the texture bar (when the singletons are reciprocally orthogonal) operates only at short distances and enhances discrimination, indicating an initial stage of texture segregation based on local processing. (ii) Spatial interactions between parallel singletons are present at short distances and reduce discrimination. (iii) An interruption of background flow (directed along the orientation of background line elements) produced by the grouped pattern when orthogonal to it, enhances discrimination; this effect is present at both short and large distances between singletons, indicating a global process. (iv) Spatial interactions are present between parallel singletons even at large distances and independently of background orientation, suggesting that grouping generates a figural context within which features to be bound together interact. Moreover, flow interruption and figural context were absent in a detection task, thereby suggesting their specific involvement in grouping and figure binding. Overall, the results may indicate that grouping operates on already segmented line elements, across different orientations and over both short and long distances in between. *C 1997 Elsevier Science Ltd. All rights reserved.