Miracle-dz/UniFAR-FTUs huggingface dataset:
How The visual system turns things the right way up

The output of the visual brain usually shows no hint of doubt about what you see, which is why those rare situations of ambiguity are troubling—is it a face or a vase? Are the colors of the dress white and gold or blue and black? The retinal projection of any object, such as a fork, will vary dramatically as your physical relationship to it changes, either because it moves or you do. Like two snowflakes, precisely the same retinal image might never be encountered twice. And yet, we effortlessly recognize the fork. The disjunction between the input to the visual machine—the retinal images—and its output—the perception of a fork—underscores a key neural operation: the brain’s alchemy that transforms signals represented by retinal coordinates into representations defined by behaviorally relevant coordinates (Conway, 2018). This is, of course, adaptive: we wouldn’t want perception to be a simple linear read-out of retinal images any more than we would want the conception of snow to be defined by one configuration of ice crystals. There is nothing veridical about retinal images—they are upside down and backwards. The paradox of vision is that it depends on ephemeral and flipped retinal images yet gives rise to stable percepts that are the right way up. Davida, the young woman studied by Vannuscorps, Galaburda, and Caramazza, provides fascinating clues to how this paradox unfolds. Davida experiences ambiguity about the orientation of drawings of shapes, stripped of their threedimensional context, depicted on a flat surface in high contrast. When shown a drawing of an arrow, a letter, or an object, Davida sees it as a dynamic hybrid of rotated versions, either flipped vertically or mirror reversed. But if the image is blurred or the contrast is greatly reduced, the object depicted in the image has a stable orientation. She has no difficulty seeing objects in the real world. Classic work in visual cognition uncovered the dorsal and ventral streams, which interpret signals from retinotopic cortex toward behaviorally relevant operations of “where” and “what”, or “action” and “object”. Meanwhile, classic visual neurophysiology revealed two main subcortical channels carried by magnocellular and parvocellular cells of the lateral geniculate nucleus, which relay retinal information to visual cortex. It has been tempting to attribute perceptual experiences (and the operation of neurons in the dorsal and ventral streams) to specific neurophysiological properties of the lateral geniculate nucleus, leading to the notion that magno signals feed most dorsal-stream operations, and parvo signals supply most ventral-stream operations. The integrated framework favored by Vannuscorps to explain Davida’s experiences succumbs to this temptation, for, as they argue, Davida’s anomalous perception is restricted to images of high contrast, which the authors would like to ascribe to the high-contrast sensitivity of parvocellular neurons. We present an alternative account.
Microbiota Transplantation in an Antibiotic-Induced Bacterial Depletion Mouse Model: Reproducible Establishment, Analysis, and Application

The fecal bacteria transplantation (FMT) technique is indispensable when exploring the pathogenesis and potential treatments for microbiota-related diseases. For FMT clinical treatments, there are already systematic guidelines for donor selection, fecal bacterial separation, FMT frequency, and infusion methods. However, only a few studies have demonstrated the use of standardized FMT procedures for animal models used in theoretical research, creating difficulties for many new researchers in this field. In the present paper, we provide a brief overview of FMT and discuss its contribution to the current understanding of disease mechanisms that relate to microbiota. This protocol can be used to generate a commonly used FMT mouse model and provides a literature reference of customizable steps.
Transmission Dynamics of Punique Virus in Tunisia

A novel phlebovirus, Punique virus (PUNV), was discovered and isolated in 2008 from sandflies from Northern Tunisia. PUNV is now classified as a unique member of the Punique phlebovirus species within the Phlebovirus genus in the Phenuiviridae family (order bunyavirales). In this study, we aimed to investigate the transmission dynamics of PUNV in Tunisia. Sandflies were collected during two consecutive years, 2009 and 2010, by CDC light traps. In 2009, a total of 873 sandflies were collected and identified to the species level. Phlebotomus perniciosus was the most abundant species. One pool of P. perniciosus females collected in autumn contained PUNV RNA, yielding an infection rate of 0.11%. The population densities of circulating sandfly species were assessed during May–November 2010 in Northern Tunisia by using sticky traps. Phlebotomus (Larroussius) perniciosus (71.74%) was the most abundant species, followed by Phlebotumus (Larroussius) longicuspis (17.47%), and Phlebotumus (Larroussius) perfiliewi (8.82%). The densities of dominant sandfly species were found to peak in early spring and again in the autumn. In 2010, species identification was not performed, and sandflies were only discriminated on the basis of sex and collection date. Out of 249 pools, three contained PUNV RNA. Each positive pool allowed virus isolation. The three pools of female sandflies containing PUNV RNA were collected in autumn with an infection rate of 0.05%. These findings provide further evidence that P. perniciosus is the main vector of PUNV in Tunisia, and this phlebovirus is endemic in Tunisia. Our findings provided strong evidence of intensive circulation of PUNV in sandflies and hosts through a viral infection buildup process between sandfly vectors and hosts starting at the beginning of the activity of sandflies in spring to reach a maximum during the second main peak in autumn.
Characterization of High-Risk HPV/EBV Co-Presence in Pre-Malignant Cervical Lesions and Squamous Cell Carcinomas

High-risk human papillomaviruses (HR-HPVs) are the etiological agents of cervical cancer. However, a low proportion of HR-HPV-infected women finally develop this cancer, which suggests the involvement of additional cofactors. Epstein–Barr virus (EBV) has been detected in cervical squamous cell carcinomas (SCCs) as well as in low- (LSIL) and high-grade (HSIL) squamous intraepithelial lesions, although its role is unknown. In this study, we characterized HR-HPV/EBV co-presence and viral gene expression in LSIL (n = 22), HSIL (n = 52), and SCC (n = 19) from Chilean women. Additionally, phenotypic changes were evaluated in cervical cancer cells ectopically expressing BamHI-A Rightward Frame 1 (BARF1). BARF1 is a lytic gene also expressed in EBV-positive epithelial tumors during the EBV latency program. HPV was detected in 6/22 (27.3%) LSIL, 38/52 (73.1%) HSIL, and 15/19 (78.9%) SCC cases (p < 0.001). On the other hand, EBV was detected in 16/22 (72.7%) LSIL, 27/52 (51.9%) HSIL, and 13/19 (68.4%) SCC cases (p = 0.177). HR-HPV/EBV co-presence was detected in 3/22 (13.6%) LSIL, 17/52 (32.7%) HSIL, and 11/19 (57.9%) SCC cases (p = 0.020). Additionally, BARF1 transcripts were detected in 37/55 (67.3%) of EBV positive cases and in 19/30 (63.3%) of HR-HPV/EBV positive cases. Increased proliferation, migration, and epithelial-mesenchymal transition (EMT) was observed in cervical cancer cells expressing BARF1. Thus, both EBV and BARF1 transcripts are detected in low- and high-grade cervical lesions as well as in cervical carcinomas. In addition, BARF1 can modulate the tumor behavior in cervical cancer cells, suggesting a role in increasing tumor aggressiveness.
Management of hair loss after severe acute respiratory syndrome coronavirus 2 infection: Insight into the pathophysiology with implication for better management

Coronavirus disease 2019 (COVID‐19) caused by severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) was declared a pandemic by the World Health Organization, and COVID‐19 continues to have a major impact on society. Numerous studies have reported impaired health sequelae after COVID‐19 recovery, one of which is hair loss. Individuals with hair loss experience a substantial mental burden, which potentially hinders their social life. However, few studies have systematically analyzed the details including hair loss. Therefore, we conducted a narrative review using PubMed on the frequency, associated comorbidities, disease characteristics, and treatment of hair loss after SARS‐CoV‐2 infection (HLASCI). Two search strings were used to identify 28 articles. Of note, most of the literature identified on COVID‐19 sequelae reported an emergence/occurrence of hair loss. HLASCI is speculated to be composed of a heterogeneous population, with the onset or exacerbation of telogen effluvium (TE), anagen effluvium, androgenetic alopecia (AGA), and alopecia areata (AA) reported as possible underlying mechanisms. Among these, acute TE is thought to be the primary cause of HLASCI, with COVID‐19 treatment and TE improvement being considered crucial for HLASCI management. An association between COVID‐19 and AA exacerbation has also been implicated with still insufficient evidence. Spontaneous recovery of TE can be expected once infection reduces; however, faster improvement in symptoms is expected to reduce the mental and social burden of patients. An additional search string identified 11 articles about TE treatment which suggested that the use of minoxidil may be beneficial. Topical minoxidil has been widely used for AGA patients, who have been speculated to exhibit poor resistance to SARS‐CoV‐2. Topical minoxidil may provide relief from HLASCI, but future clinical research is warranted to confirm this observation.
Selenium Nanoparticles (Se-NPs) Alleviates Salinity Damages and Improves Phytochemical Characteristics of Pineapple Mint (Mentha suaveolens Ehrh.)

The present study examined the effects of foliar spray of selenium nanoparticles (0, 10 and 20 mg/L) on the yield, phytochemicals and essential oil content and composition of pineapple mint (Mentha suaveolens Ehrh.) under salinity stress (0, 30, 60 and 90 mM NaCl). Obtained results demonstrated that severe salinity stress reduced the fresh weight (FW) and plant height (PH) by 16.40% and 19.10%, respectively compared with normal growth condition. On the other hands, under sever salinity stress relative water content (RWC) and chlorophyll index were reduced by 18.05% and 3.50%, respectively. Interestingly, selenium nanoparticles (Se-NPs; 10 mg/L) application improved the pineapple mint growth. Based on GC-FID and GC-MS analysis, 19 compounds were identified in pineapple mint essential oil. Foliar application of Se-NPs and salinity did not change the essential oil content of pineapple mint, however, the essential oil compounds were significantly affected by salinity and Se-NPs- applications. Foliar application of Se-NPs- had a significant effect on piperitenone oxide, limonene, jasmone, viridiflorol and β-myrsene under different salinity levels. The highest percentage of piperitenone oxide (79.4%) as the major essential oil component was recorded in the no salinity treatment by applying 10 mg/L of nanoparticle. Interestingly, application of 10 mg L−1 Se-NPs- under 60 mM NaCl increased the piperitenone oxide content by 9.1% compared with non-sprayed plants. Finally, the obtained results demonstrated that foliar application of Se-NPs (10 mg L−1) can improve the pineapple mint growth and secondary metabolites profile under saline conditions.
Investigating the NLRP3 inflammasome and its regulator miR‐223‐3p in multiple sclerosis and experimental demyelination

Innate immune signaling pathways are essential mediators of inflammation and repair following myelin injury. Inflammasome activation has recently been implicated as a driver of myelin injury in multiple sclerosis (MS) and its animal models, although the regulation and contributions of inflammasome activation in the demyelinated central nervous system (CNS) are not completely understood. Herein, we investigated the NLRP3 (NBD‐, LRR‐ and pyrin domain‐containing protein 3) inflammasome and its endogenous regulator microRNA‐223‐3p within the demyelinated CNS in both MS and an animal model of focal demyelination. We observed that NLRP3 inflammasome components and microRNA‐223‐3p were upregulated at sites of myelin injury within activated macrophages and microglia. Both microRNA‐223‐3p and a small‐molecule NLRP3 inhibitor, MCC950, suppressed inflammasome activation in macrophages and microglia in vitro; compared with microglia, macrophages were more prone to inflammasome activation in vitro. Finally, systemic delivery of MCC950 to mice following lysolecithin‐induced demyelination resulted in a significant reduction in axonal injury within demyelinated lesions. In conclusion, we demonstrate that NLRP3 inflammasome activity by macrophages and microglia is a critical component of the inflammatory microenvironment following demyelination and represents a potential therapeutic target for inflammatory‐mediated demyelinating diseases, including MS.
Human–machine interaction theories and lane departure warnings

ABSTRACT A technological race toward always ever-increasing automation is engaged, a race in which automation users are hardly considered. This explains why more automation is not necessarily for the best. A variety of human–machine interaction (HMI) theories co-exist. First, those HMI theories and predictions for lane departure warnings systems (LDWS, assisted driving automation) are described. Second, a synthesis of the key questions currently addressed by empirical data on LDWS is offered. Lastly, a new model of human–machine cooperation modelling is proposed. The model has been inspired by previous theories and empirical data collected with LDWS-assisted driving. Interestingly, automation such as LDWS seems to avoid the ‘ironies of automation’ with no negative effects on human performance. However, a major issue to be addressed is poor automation acceptance. While the focus was set on LDWS to offer a complete overview for this type of device, the model may be extended to other warning assistance devices.
Profiles of Physical Activity and Physical Performance in Matched Religious Vegetarian and Nonvegetarian Women: A Preliminary Observational Study in Taiwan

Religious vegetarianism has become more popular with women and increases with age. However, concerns have been raised that vegetarians are less productive than nonvegetarians. Thus, we aimed to compare the characteristics of physical activity and physical performance in properly matched religious vegetarian and nonvegetarian women aged ≥ 45 years. Participants (n = 160) were recruited via convenience sampling in the community of Hualien, Taiwan, and matched by demographic and cognitive characteristics. Physical activity was assessed using the International Physical Activity Questionnaire-Short Form (IPAQ-SF). Physical performance was assessed with handgrip strength, five-times-sit-to-stand, gait speed, timed up-and-go, and functional reach tests (FRT). Overall, 90% of religious vegetarians practiced lacto-ovo-vegetarianism. The proportions of those with low physical activity levels and poor physical performance did not significantly differ between religious vegetarians and nonvegetarians. Additionally, there were no significant between-group differences in IPAQ-SF scores and physical performance, except for FRT performance (mean 24.5 cm vs. 19.7 cm, p < 0.001). Exhaustion after work, busyness, and a lack of interest were three main reasons for low physical activity levels, and none of these had significant between-group differences (p = 0.936). Our results show a similar profile of physical activity and physical performance in religious vegetarian and nonvegetarian women.
Geographic Disparities in Stroke Outcomes and Service Access

Background and Objectives International evidence shows that patients treated at nonurban hospitals experience poorer access to key stroke interventions. Evidence for whether this results in poorer outcomes is conflicting and generally based on administrative or voluntary registry data. The aim of this study was to use prospective high-quality comprehensive nationwide patient-level data to investigate the association between hospital geography and outcomes of patients with stroke and access to best-practice stroke care in New Zealand. Methods This is a prospective, multicenter, nationally representative observational study involving all 28 New Zealand acute stroke hospitals (18 nonurban) and affiliated rehabilitation and community services. Consecutive adults admitted to the hospital with acute stroke between May 1 and October 31, 2018, were captured. Outcomes included functional outcome (modified Rankin Scale [mRS] score shift analysis), functional independence (mRS score 0–2), quality of life (EuroQol 5-dimension, 3-level health-related quality of life questionnaire), stroke/vascular events, and death at 3, 6, and 12 months and proportion accessing thrombolysis, thrombectomy, stroke units, key investigations, secondary prevention, and inpatient/community rehabilitation. Results were adjusted for age, sex, ethnicity, stroke severity/type, comorbid conditions, baseline function, and differences in baseline characteristics. Results Overall, 2,379 patients were eligible (mean [SD] age 75 [13.7] years; 51.2% male; 1,430 urban, 949 nonurban). Patients treated at nonurban hospitals were more likely to score in a higher mRS score category (greater disability) at 3 (adjusted odds ratio [aOR] 1.28, 95% CI 1.07–1.53), 6 (aOR 1.33, 95% CI 1.07–1.65), and 12 (aOR 1.31, 95% CI 1.06–1.62) months and were more likely to have died (aOR 1.57, 95% CI 1.17–2.12) or experienced recurrent stroke and vascular events at 12 months (aOR 1.94, 95% CI 1.14–3.29 and aOR 1.65, 95% CI 1.09–2.52). Fewer nonurban patients received recommended stroke interventions, including endovascular thrombectomy (aOR 0.25, 95% CI 0.13–0.49), acute stroke unit care (aOR 0.60, 95% CI 0.49–0.73), antiplatelet prescriptions (aOR 0.72, 95% CI 0.58–0.88), ≥60 minutes of daily physical therapy (aOR 0.55, 95% CI 0.40–0.77), and community rehabilitation (aOR 0.69, 95% CI 0.56–0.84). Discussion Patients managed at nonurban hospitals experience poorer stroke outcomes and reduced access to key stroke interventions across the entire care continuum. Efforts to improve access to high quality stroke care in nonurban hospitals should be a priority.
Synthesis of PP2A-Activating PF-543 Derivatives and Investigation of Their Inhibitory Effects on Pancreatic Cancer Cells

Sphingosine kinase (SK) is involved in the growth of cells, including cancer cells. However, which of its two isotypes—SK1 and SK2—is more favorable for cancer growth remains unclear. Although PF-543 strongly and selectively inhibits SK1, its anticancer effect is not high, and the underlying reason remains difficult to explain. We previously determined that the tail group of PF-543 is responsible for its low metabolic stability (MS). In this study, compounds containing aromatic or aliphatic tails in the triazole group were synthesized, and changes in the SK-inhibitory effect and anticancer activity of PF-543 were assessed using pancreatic cancer cells. The compounds with aliphatic tails showed high inhibitory effects on pancreatic cancer cells but slightly lower selectivity for SK1. A compound with an introduced aliphatic tail activated protein phosphatase 2A (PP2A), showing an effect similar to that of FTY720. Molecular docking analysis revealed that the PP2A-binding form of this newly synthesized compound was different from that noted in the case of FTY720. This compound also improved the MS of PF-543. These results indicate that the tail structure of PF-543 influences MS.
Prevalence, incidence and associated factors for HBV infection among male and female prisoners in Central Brazil: A multicenter study

Background: Prison populations are at high risk for hepatitis B virus (HBV) infection. The aim of this study was to assess the prevalence, incidence, HBV associated factors and circulating genotypes/subtypes. Methods: A total of 3,368 prisoners from 12 closed prisons were randomly recruited for a cross-sectional study. In addition, a cohort study was conducted 12 months later and included 1,656 individuals. Participants underwent an interview and blood collection for the detection of HBV serological markers and HBV-DNA phylogenetic analysis. Results: HBV exposure (anti-HBc + ) was 9.8% (95% CI: 8.8-10.8); 11.2% were female and 9.6% were male. HBsAg+ was 0.6%. Only 31.4% of the participants had HBV vaccination-like pro ﬁ le (anti-HBs+ alone; 30.4% male vs. 36.8% female; p = 0.004). Most individuals were susceptible to HBV (60.2% female vs. 52.2% male, p = 0.001). HBV isolates were classi ﬁ ed as genotypes A (45.4%), D (27.3%) and F (27.3%). In males, HBV exposure was associated with increased age. Male prisoners had more evidence of HCV/HBV co-infection (10.7%) than females (3.4%) and the frequency of Treponema pallidum infection among prisoners who had been exposed to HBV was higher in female prisoners when compared with male (39.7% vs.19.1%). The incidence of HBV was 0.18/100 person-years (95% CI: 0.12% – 0.25%). Conclusions: Our results indicate a high prevalence of HBV exposure in prisoners. Despite the low incidence of this infection, the occurrence of new cases indicates the need to implement preventive measures. © 2020 The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. nd/4.0/).
POTENTIAL OF MAIZE, MILLET AND RATTLEBOX TO BREAK THE CYCLE OF Spodoptera eridania (CRAMER) (LEPIDOPTERA: NOCTUIDADE)

This study evaluated the effect of different crops grown during soybean offseason on the development and reproduction of Spodoptera eridania (Cramer). The experiment was conducted in laboratory at 25°C±1°C, relative air humidity of 70% ± 10% and a 12h photophase. The plants evaluated were cotton (FMT 701), sunflower (Embrapa 122-V2000), rattlebox ( Crotalaria spectabilis Roth), corn (Dekalb 370), and millet (DR-300). The less suitable hosts for the survival of S. eridania were rattlebox, corn and millet. Only in cotton and sunflower the species completed its development (egg to adult). Corn, millet and rattlebox were the crops that most affected the performance of S. eridania , and therefore they could potentially be used in the soybean offseason period to interrupt the life cycle of this species, and thus reduce population incidence during soybean season.
REVISITING THE MERE EFFORT ACCOUNT

According to the mere effort account of performance, stereotype threat motivates disproval of the negative performance stereotype, which in turn potentiates the overproduction of prepotent responses. In mathematics (maths), prepotent responding facilitates solve type question (e.g., equations) performance, but reduces comparison type question (e.g., estimations) performance. Problematically, the mere effort account indexes performance motivation as task performance. Also, this account posits that performance reduction on non-prepotent tasks derives from the overproduction of prepotent responses, as opposed to failed inhibition of prepotent responses associated with the alternative, namely, the working memory interference perspective. We investigated motivational and prepotent responding as applied to stereotype threat. In Experiment 1, a maths question selection task indexed motivation (independently of performance). Stereotype threat led female test-takers to select more solve than comparison maths questions, in accord with the mere effort account. In Experiment 2, higher inhibitory ability protected overall maths performance following stereotype threat, but it did not protect non-prepotentiated comparison question performance (inconsistent with the working memory interference perspective). The results support the mere effort account.