Miracle-dz/UniFAR-FTUs huggingface dataset:
Comparison of abdominal depth with subcutaneous fat thickness in predicting surgical site infection among patients undergoing hepatopancreatobiliary surgery: a prospective observational study

Introduction: Surgical site infection (SSI) is a significant cause of postoperative morbidity resulting in an increased hospital stay and cost. Various measures have been used to predict SSI such as subcutaneous fat thickness (SCFT) and abdominal depth (AD) in case of abdominal surgeries. The objective of the study was to compare SCFT with AD to predict SSI in HPB surgeries. Methods: A prospective observational study was conducted from February 2020 to February 2021, which included 76 patients who underwent elective open hepatopancreatobiliary surgeries. SCFT and AD at the level of the umbilicus were measured preoperatively using the computed tomography abdomen. The occurrence of SSI was evaluated in correlation with SCFT and AD. SCFT and AD were compared using the receiver operating characteristic curve for prediction of SSI. Results: Twenty-five (32.3%) patients who underwent elective HPB surgeries developed SSI. 72% of the SSI were superficial. In multivariate analysis, only SCFT was associated with SSI, which was statistically significant. It was compared with AD using the receiver operating characteristic curve where SCFT proved to be better at predicting SSI (AUC=0.884) with cut-off =2.13 cm, sensitivity 84%, and specificity 86%), compared to AD with an AUC of 0.449. Conclusion: SSI is the common cause of increased morbidity following hepato-pancreato-biliary surgeries with risk factors including SCFT and AD. Approximately one-third of patient developed SSI, with most the common being superficial SSI. SCFT at the incision site was associated with an increased rate of SSI and the better predictor for SSI as compared with the AD.
Evolution of the south-central segment of the Archean Abitibi Belt, Quebec. Part II: Tectonic evolution and geomechanical model

In this paper, we describe the relations between the paleogeographic and tectonic evolution of the southwestern part of the Archean Abitibi and Bellecombe belts. Volcanism in the Abitibi Belt created a very thick, anisotropic plate composed of competent volcanic rocks and broken by the Duparquet–Destor break. The depocenters of the upper division of diverse volcanic rocks subsided about 10 km relative to their surroundings, and some central volcanic complexes within this division were consolidated by synvolcanic plutons and their thermal metamorphic aureole. The Cadillac break, a normal fault, separated the Abitibi and Bellecombe belts. The latter consisted of comparatively incompetent sedimentary rocks on top of a basement composed of ultramafic–mafic flows.North–south compression of the volcanic terrain during the Kenoran Orogeny produced a set of flexure folds, F1, that curve around the consolidated cores of central volcanic complexes generally in an easterly direction. Synclinoria nucleated at the dee.
Correlation of eGFR values estimated by different equations based on creatinine and cystatin-C in patients on hemodialysis treatment at Teaching Hospital Karapitiya, Galle, Sri Lanka

The present study was to compare eGFR values estimated from different equations based on creatinine and cystatin-C in patients on hemodialysis treatment. eGFR values were calculated using Modification of Diet in Renal Disease (MDRD), Chronic Kidney Disease Epidemiology equations based on Creatinine (CKD-EPICr) and cystatin-C values alone (CKDEPI Cys C) and by their combination (CKD-EPICr-Cys C), using 40 pre-dialysis samples. No significant differences in renal function parameters and eGFR were observed, either between male (55%) and female (45%) patients or within different age groups (p>0.05). Certain levels of agreement (p>0.05) were observed between the equations, except for the values derived from CKD-EPICys C and CKD-EPICr-Cys C (p = 0.022). Significant positive correlations were observed between all selected equations. The highest correlation was observed between CKD-EPICr and MDRD (r = 0.998, p = 0.000), whereas the lowest correlation was found between MDRD and CKD-EPICys C (r = 0.552, p = 0.000). The present findings revealed that MDRD and CKD-EPICr equations are suitable for the calculation of eGFR in routine local clinical settings for the assessment of progression of kidney impairment in patients with CKD on hemodialysis treatment. However, the use of CKD-EPICr-Cys C rather than the CKD-EPICys C is recommended as a confirmatory tool where necessary.
The Role of Job Satisfaction and Organizational Commitment in Mediating the Influence of Transformational Leadership on the Performance of Police Personnel Polda Sultra Work Unit

Improving organizational performance requires considering employees' work attitudes and behaviours. Inconsistent training can lead to a lack of initiative and responsiveness, decreasing performance. This study aimed to examine the impact of transformational leadership on job satisfaction and organizational commitment in mediating the influence on police personnel performance. The study included 275 individuals, and data was collected through questionnaires and SEM modelling. The findings showed that transformational leadership significantly impacted job satisfaction, organizational commitment, and police personnel performance. Job satisfaction and organizational commitment were interconnected and significantly affected police personnel performance. Transformational leadership also impacted police personnel performance through organizational commitment and job satisfaction. The study has important implications for leaders seeking to strengthen job satisfaction and organizational commitment, leading to increased performance among police personnel. Future research may investigate other variables related to job satisfaction.
A quantitative model for integrating landscape evolution and soil formation

Landscape evolution is closely related to soil formation. Quantitative modeling of the dynamics of soils and landscapes should therefore be integrated. This paper presents a model, named Model for Integrated Landscape Evolution and Soil Development (MILESD), which describes the interaction between pedogenetic and geomorphic processes. This mechanistic model includes the most significant soil formation processes, ranging from weathering to clay translocation, and combines these with the lateral redistribution of soil particles through erosion and deposition. The model is spatially explicit and simulates the vertical variation in soil horizon depth as well as basic soil properties such as texture and organic matter content. In addition, sediment export and its properties are recorded. This model is applied to a 6.25 km2 area in the Werrikimbe National Park, Australia, simulating soil development over a period of 60,000 years. Comparison with field observations shows how the model accurately predicts trends in total soil thickness along a catena. Soil texture and bulk density are predicted reasonably well, with errors of the order of 10%, however, field observations show a much higher organic carbon content than predicted. At the landscape scale, different scenarios with varying erosion intensity result only in small changes of landscape‐averaged soil thickness, while the response of the total organic carbon stored in the system is higher. Rates of sediment export show a highly nonlinear response to soil development stage and the presence of a threshold, corresponding to the depletion of the soil reservoir, beyond which sediment export drops significantly.
Origin of early overpressure in the Upper Devonian Catskill Delta Complex, western New York state

The Upper Devonian Rhinestreet black shale of the western New York state region of the Appalachian Basin has experienced multiple episodes of overpressure generation manifested by at least two sets of natural hydraulic fractures. These overpressure events were thermal in origin and induced by the generation of hydrocarbons during the Alleghanian orogeny close to or at the Rhinestreet's ∼3.1 km maximum burial depth. Analysis of differential gravitational compaction strain of the organic‐rich shale around embedded carbonate concretions that formed within a metre or so of the seafloor indicates that the Rhinestreet shale was compacted ∼58%. Compaction strain was recalculated to a palaeoporosity of 37.8%, in excess of that expected for burial >3 km. The palaeoporosity of the Rhinestreet shale suggests that porosity reduction caused by normal gravitational compaction of the low‐permeability carbonaceous sediment was arrested at some depth shy of its maximum burial depth by pore pressure in excess of hydrostatic. The depth at which the Rhinestreet shale became overpressured, the palaeo‐fluid retention depth, was estimated by use of published normal compaction curves and empirical porosity‐depth algorithms to fall between 850 and 1380 m. Early and relatively shallow overpressuring of the Rhinestreet shale likely originated by disequilibrium compaction induced by a marked increase in sedimentation rate in the latter half of the Famennian stage (Late Devonian) as the Catskill Delta Complex prograded westward across the Appalachian Basin in response to Acadian tectonics. The regional Upper Devonian stratigraphy of western New York state indicates that the onset of overpressure occurred at a depth of ∼1100 m, well in advance of the Rhinestreet shale's entry into the oil window during the Alleghanian orogeny.
Pleistocene giant slope failures offshore Arauco Peninsula, Southern Chile

Abstract: Three Pleistocene giant slope failures are observed in high-resolution bathymetric and seismic reflection data off Southern Chile, two of which extend across the full width of the continental slope from the shelf break to the trench. With mobilized volumes between 253 km3 and 472 km3, these slides are among the largest submarine landslides documented at active continental margins so far. Deposits of each of the slides are imaged as chaotic sequences in seismic reflection lines buried beneath well-stratified sediments in the Chile Trench. The ages of the three slides are about 0.25, 0.41 and >0.56 Ma. The main preconditioning factor for the slope instabilities seems to be local uplift of the continental slope that results in peculiarly high slope angles of up to 30°. Uplift of the marine and continental forearc of the study area is the result of shortening across upper plate faults and therefore a long-term continuous process. Slope instability seems to be an iterative process and failure is likely to recur.
Design of the HYREX raingauge network

Abstract. Dense raingauge experiments in the past have experienced difficulties in the automated recording of rainfall amount and timing which with the benefit of modern instrument technology are now less problematic. The HYdrological Radar EXperiment, HYREX, provided a timely opportunity to design and implement a dense raingauge network in support of rainfall measurement and modelling research studies concerned with the use of weather radar in hydrology. The principles and random function theory underlying the design of this raingauge network over the Brue catchment in south-west England are detailed in this paper. Keywords: raingauge, design, network, rainfall, flood, spatial correlation
High-speed image reconstruction for super-resolution structured illumination microscopy using facile optimization and conversion of reconstruction code in the GPU environment

Super-resolution, structured illumination microscopy (SIM) is an ideal modality for imaging live cells due to its relatively high speed and low photon-induced damage to the cells. SIM consists of two generic components: (i) sample illumination by a sinusoidal pattern and (ii) computational reconstruction of a super-resolution image. The rate-limiting step in observing a super-resolution image in SIM is the reconstruction speed of the algorithm required to form a single image from as many as nine raw images. These reconstruction algorithms impose a significant computing burden due to a complex workflow and a large number of calculations requiring 10-300 seconds per image nullifying real-time imaging. In this mini-review, we show how the approaches we developed to improve Hessian-SIM algorithm reconstruction speed can be used to improve other SIM image reconstruction algorithms. These approaches, which included code improvement, conversion to the GPU environment, and use of cost-effective high-performance computers produce up to 500-fold increases in image reconstruction speed.
Differential Recognition of Clinically Relevant Sporothrix Species by Human Granulocytes

Sporotrichosis is a cutaneous mycosis that affects humans and animals and has a worldwide distribution. This infection is mainly caused by Sporothrix schenckii, Sporothrix brasiliensis, and Sporothrix globosa. Current research about anti-Sporothrix immunity has been mainly focused on S. schenckii and S. brasiliensis, using different types of human or animal immune cells. Granulocytes are a group of cells relevant for cytokine production, with the capacity for phagocytosis and the generation of neutrophil extracellular traps (NETs). Considering their importance, this study aimed to compare the capacity of human granulocytes to stimulate cytokines, uptake, and form NETs when interacting with different Sporothrix species. We found that conidia, germlings, and yeast-like cells from S. schenckii, S. brasiliensis, and S. globosa play an important role in the interaction with these immune cells, establishing morphology- and species-specific cytokine profiles. S. brasil-iensis tended to stimulate an anti-inflammatory cytokine profile, whilst the other two species had a proinflammatory one. S. globosa cells were the most phagocytosed cells, which occurred through a dectin-1-dependent mechanism, while the uptake of S. brasiliensis mainly occurred via TLR4 and CR3. Cell wall N-linked and O-linked glycans, along with β-1,3-glucan, played a significant role in the interaction of these Sporothrix species with human granulocytes. Finally, this study indicates that conidia and yeast-like cells are capable of inducing NETs, with the latter being a better stimulant. To the best of our knowledge, this is the first study that reports the cytokine profiles produced by human granulocytes interacting with Sporothrix cells.
Vertical stratification of tropical cloud properties as determined from satellite

A new retrieval scheme is developed to infer tropical cloud properties and vertical structure, including liquid and ice water content, cloud top and base, and cloud layering. The retrieval scheme utilizes a cloud classification scheme that uses both International Satellite Cloud Climatology Project (ISCCP) cloud top temperature and a microwave index from the special sensor microwave/imager (SSM/I). Different cloud classes have different allowed numbers of cloud layers. The retrieval scheme also incorporates findings from observational studies. When multiple liquid layers are judged to be possible, a “cloudiness likelihood” parameter is used to determine the priority for the presence of liquid layer at each level, based on the European Centre for Medium-Range Weather Forecasts analyzed relative humidity field. Cloud liquid water path is determined using a microwave satellite retrieval. In case of multiple liquid layers, the liquid water path is partitioned and assigned to each liquid layer in proportion to the adiabatic liquid water path in each layer. Depending on the cloud class, ice water paths are determined using one of the following methods: (1) ISCCP ice optical depth; (2) a microwave ice retrieval that uses ice scattering signals at high SSM/I frequencies; and (3) a residual method that infers ice from the difference between a “virtual” liquid water path derived from ISCCP total optical depth and the true liquid water path determined from SSM/I. The retrieved cloud layering is indirectly validated using cloud cooccurrence climatology from surface observations. The cloud base retrieval is compared with lidar measurements obtained during the Tropical Ocean-Global Atmosphere Coupled Ocean-Atmosphere Response Experiment.
Enhancements to Landro's method for separating time -lapse pressure and saturation changes

Landro’s (1999) method is an inversion technique that solves for time-lapse pressure and saturation changes from seismic amplitude-versus-offset (AVO) data. The method relies on the fact that pressure changes affect the slope and intercept of the AVO curve differently than do saturation changes. Specific assumptions are made about the range of validity of various parameters and the behavior of the Pand S-velocity and density as functions of pressure and saturation. We present two modifications of Landro’s method that are valid under different, but less restrictive, conditions, and we test these modifications using synthetic seismic data from a North Sea reservoir model. In the first modification, P- and S-wave impedances are used instead of the slope and intercept, while in the second modification, the P-velocity is assumed to vary quadratically, instead of linearly, with saturation. The first modified method yields results similar to Landro’s original method when the slope is calculated exactly. Inversion results from the second modification yield more accurate saturation values than those estimated by Landro’s method. In all cases, however, pressure changes “leak” onto the saturation map, and pressure decreases are not accurately determined, a result that can be explained by the poor sensitivity of P- and Swave velocities to decreases in pore pressure.
A climatological analysis on the recent declining trend of rice quality in Japan

A remarkable declining trend in rice quality has already been observed in western Japan and the future global warming associated with climate change is likely to exacerbate such risk. In this study, a simple statistical model was constructed to estimate the rice quality, which is defined as the proportion of white immature grains on a prefectural scale, in terms of two major climate variables during the grain-filling stage: the cumulative weighted effective temperature d and the cumulative solar radiation SR. In order to account for the uncertainties included in the processes involved, Bayesian inference was used to estimate the model parameters. The modeled time changes in rice quality correlated well to those observed. Specifically, the reproducibility of rice quality since 2000 was particularly high. These results suggested that a combination of the two climate factors was responsible for the recent variability in rice quality on a prefectural scale. Subsequently, the elasticity of rice quality relative to d and SR was examined based on the model. The elasticity represents the relative change in rice quality in response to a change in d or SR, with a positive (negative) sign indicating increased (decreased) quality. Consequently, the mean elasticity of the rice quality relative to SR was larger than that to d in Kyushu. Moreover, the time changes of rice quality in Kyushu synchronized with that of SR under high temperature conditions, suggesting that rice plants become more sensitive to conditions of insufficient radiation if exposed to high temperatures. Consequently, it was concluded that the contribution of the radiation condition to the variation in rice quality become relatively larger along with the recent increase in temperature.
Reverse Shoulder Arthroplasty Patients Younger Than 60 Years Old Exhibit Lower Clinically Significant Single Assessment Numeric Evaluation (SANE) Scores Compared to Older Patients

Introduction: The incidence of reverse shoulder arthroplasty (RTSA) in the United States has increased. Patients under 60 years old with failed rotator cuff repairs or degenerative joint disease with glenoid deformity may be candidates for RTSA and contribute to this increase. The single assessment numeric evaluation (SANE) score is a reliable post-operative scoring technique when compared with other post-operative measures. This study aimed to compare the effect of age on the likelihood of reaching clinically significant SANE scores following RTSA. Methods: A multicenter retrospective review was performed with a consecutive series of RTSA from December 2015 to September 2021. Patients were stratified into groups based on their age at the time of operation: (1) less than 60 years old, (2) 60-69 years old, (3) 70-79 years old, and (3) greater than 80 years old. The proportions of patients in all cohorts reaching and surpassing clinically significant thresholds at each visit were determined. Likelihood ratios were determined for each age cohort to compare the likelihood of reaching clinically significant SANE scores. Results: A total of 292 of 885 (33%) patients had completed survey data over two years and were included in the study. The 70-79-year-old group was 3.152 (p=.035) times more likely to achieve minimal clinically important difference (MCID) and 2.125 (p=.048) times more likely to achieve patient-acceptable symptomatic state (PASS) compared with patients <60 years old. The cohort who was 80+ years old was also 4.867 (p=.045) times more likely to achieve MCID compared to the <60-year-old cohort. The <60 cohort had the lowest proportion of all patient cohorts achieving MCID. Conclusion: A lower proportion of patients younger than 60 years old undergoing RTSA achieved clinically significant post-operative SANE scores. The 70-79-year-old age group was more likely to reach MCID and PASS, and the patients who were 80+ years old were more likely to reach MCID compared to patients younger than 60 years old.