Miracle-dz/UniFAR-FTUs huggingface dataset:
The effect of variety mixtures on the development of swede powdery mildew

Infection by Erysiphe polygoni was followed on the components of five mixed populations containing different proportions of a partially resistant swede variety, Ruta Otofte (RO), and a highly susceptible variety, Ne Plus Ultra (NPU) (100:0; 75:25; 50:50; 25:75; 0:100). Disease levels remained much lower on RO than on NPU in all populations. For several weeks, disease on NPU was greatest in pure plots and was progressively reduced in mixtures with increasing proportions of RO. Later, disease levels on NPU were similar in all populations. Disease on RO was not increased in mixtures with NPU. Root yield of NPU, but not of RO, was greater in mixtures than in pure stands. The possible use of variety mixtures to control powdery mildew in swede crops is discussed.
Cognitive Decline in Alzheimer’s Disease: Limited Clinical Utility for GWAS or Polygenic Risk Scores in a Clinical Trial Setting

Introduction: Alzheimer’s disease (AD) is a progressive and irreversible neurological disease. The genetics and molecular mechanisms underpinning differential cognitive decline in AD are not well understood; the genetics of AD risk have been studied far more assiduously. Materials and Methods: Two phase III clinical trials measuring cognitive decline over 48 weeks using Alzheimer’s Disease Assessment Scale-cognitive subscale (ADAS-cog, n = 2060) and Clinical Dementia Rating-Sum of Boxes (CDR-SB, n = 1996) were retrospectively genotyped. A Genome-Wide Association Study (GWAS) was performed to identify and replicate genetic variants associated with cognitive decline. The relationship between polygenic risk score (PRS) and cognitive decline was tested to investigate the predictive power of aggregating many variants of individually small effect. Results: No loci met candidate gene or genome-wide significance. PRS explained a very small percentage of variance in rates of cognitive decline (ADAS-cog: 0.54%). Conclusions: These results suggest that incorporating genetic information in the prediction of cognitive decline in AD currently appears to have limited utility in clinical trials, consistent with small effect sizes estimated elsewhere. If AD progression is more heritable soon after disease onset, genetics may have more clinical utility.
Heat increment of feeding and partitioning of dietary energy in yearling Black Brant

We examined daily energy expenditure and energy balance by making simultaneous measurements of gaseous exchange and apparent metabolizable energy (AME) intake in four captive Black Brant (Branta bernicla nigricans) that ate alfalfa pellets. Daily energy expenditure was positively correlated with AME intake in all four individuals. The slope of this relationship represented an estimate of the heat increment of feeding, which averaged 0.20 for individuals in positive energy balance. Maintenance AME intake under experimental conditions was estimated at 451–646 kJ∙d−1∙kg−1. Individuals in positive energy balance retained AME at an efficiency of 81%, which is amongst the highest recorded for birds. Thirty-five percent of the apparent net energy for production was accounted for by protein deposition, but the ratio of protein to lipid produced increased from late winter through spring.
Meiotic chromosome behaviour and karyomorphology of Aloe vera (L.) Burm. f.

Aloe vera (L.) Burm. f. (the family Aloaceae) indigenous to Africa is an admired medicinal plant used as a folk medicine. Meiotic division was investigated in A. vera with a view to decipher the behavior of chromosomes during prophase I and the subsequent stages of meiosis following acetocarmine squash technique. The various meiotic stages from leptotene to pollen development were studied. Seven bivalents were clearly visible at diplotene, and the chiasma frequency averaged to 1.86 per bivalent and 13.1 per pollen mother cell (PMC). Prophase I stages are difficult to identify due to clumping of chromosome threads. Second nuclear division, however, allows clear distinction of chromosome configuration. Besides clumping, various other types of chromosomal aberrations such as stickiness and fragments at metaphase I, precocious movement of chromosomes, bridges, laggards and unequal separation of chromosomes at anaphase I and unequal separation of chromosomes at telophase II were noted. Karyomorphological study on the other hand, was carried out in anther wall (mitotic) cells of A. vera. Mitotic as well as meiotic studies in the species showed 2n=14 chromosomes including two pairs of sat-chromosomes. The karyotype of the species was adjudged to be typically asymmetric.
Synthesis of Copper(II) Trimesinate Coordination Polymer and Its Use as a Sorbent for Organic Dyes and a Precursor for Nanostructured Material

Several important synthesis pathways for metal-organic frameworks (MOFs) were applied to determine how the synthesis methods and conditions affect the structure and adsorption capacity of the resulting samples. In the present work, three different synthesis routes were used to obtain copper trimesinate coordination polymer: Slow evaporation (A), solvothermal synthesis using a polyethylene glycol (PEG-1500) modulator (B), and green synthesis in water (C). This MOF was characterized by elemental analysis, infrared spectrometry, X-ray diffraction, scanning electron microscopy, thermogravimetry and volumetric nitrogen adsorption/desorption. The samples have permanent porosity and a microporous structure with a large surface area corresponding to the adsorption type I. The obtained MOF was tested as a sorbent to remove organic dyes methylene blue (МВ), Congo red (CR) and methyl violet (MV) as examples. Dye adsorption followed pseudo-first-order kinetics. The equilibrium data were fitted to the Langmuir and Freundlich isotherm models, and the isotherm constants were determined. Thermodynamic parameters, such as changes in the free energy of adsorption (∆G0), enthalpy (∆H0), and entropy (∆S0), were calculated. Thermolysis of copper trimesinate leads to the formation of carbon materials Cu@C with a high purity.
Inflammation-Based Scores Increase the Prognostic Value of Circulating Tumor Cells in Primary Breast Cancer

A correlation between circulating tumor cells (CTCs) and monocytes in metastatic breast cancer (BC), where CTCs and monocyte-to-lymphocyte ratio (MLR) were predictors of overall survival (OS), was recently shown. Herein, we aimed to assess the association between CTCs and the complete blood count (CBC)-derived inflammation-based scores in 284 primary BC patients. CTCs were determined in CD45-depleted peripheral blood mononuclear cells by real time-PCR. This method allowed us to detect a subset of CTCs with an epithelial-to-mesenchymal transition phenotype (CTC EMT), previously associated with inferior outcomes in primary BC. In the present study, CTC EMT positivity (hazard ratio (HR) = 2.4; 95% CI 1.20–4.66, p = 0.013) and elevated neutrophil-to-lymphocyte ratio (NLR) (HR = 2.20; 95% CI 1.07–4.55; p = 0.033) were associated with shorter progression-free survival (PFS) in primary BC patients. Multivariate analysis showed that CTC EMT-positive patients with NLR ≥ 3 had 8.6 times increased risk of disease recurrence (95% CI 2.35–31.48, p = 0.001) compared with CTC EMT-negative patients with NLR < 3. Similarly, disease recurrence was 13.14 times more likely in CTC EMT-positive patients with MLR ≥ 0.34 (95% CI 4.35–39.67, p < 0.001). Given its low methodological and financial demands, the CBC-derived inflammation-based score determination could, after broader validation, significantly improve the prognostication of BC patients.
Aberrant static and dynamic functional patterns of frontoparietal control network in antipsychotic‐naïve first‐episode psychosis subjects

Psychotic disorders are disabling clinical syndromes characterized by widespread alterations in cortical information processing. Disruption of frontoparietal network (FPN) connectivity has emerged as a common footprint across the psychosis spectrum. Our goal was to characterize the static and dynamic resting‐state functional connectivity (FC) of the FPN in antipsychotic‐naïve first‐episode psychosis (FEP) subjects. We compared the static FC of the FPN in 40 FEP and 40 healthy control (HC) subjects, matched on age, sex, and socioeconomic status. To study the dynamic FC, we measured quasiperiodic patterns (QPPs) that consist of infraslow spatioemporal patterns embedded in the blood oxygen level‐dependent signal that repeats over time, exhibiting alternation of high and low activity. Relative to HC, we found functional hypoconnectivity between the right middle frontal gyrus and the right middle temporal gyrus, as well as the left inferior temporal gyrus and the left inferior parietal gyrus in FEP (p < .05, false discovery rate corrected). The correlation of the QPP with all functional scans was significantly stronger for FEP compared to HC, suggesting a greater impact of the QPPs to intrinsic brain activity in psychotic population. Regressing the QPP from the functional scans erased all significant group differences in static FC, suggesting that abnormal connectivity in FEP could result from altered QPP. Our study supports that alterations of cortical information processing are not a function of psychotic chronicity or antipsychotic medication exposure and may be regarded as trait specific. In addition, static connectivity abnormality may be partly related to altered brain network temporal dynamics.
Tolerance to drought stress among selected Indian wheat cultivars

Experiments were designed to examine differences in some morpho-physiological characters among wheat genotypes in response to drought stress at anthesis and maturity and to determine the relationships between these characters. In three sets of experiments, one set was evaluated under well-irrigated conditions and two sets under drought stress conditions by developing terminal drought stress at anthesis in one set and at maturity in the other, for 2 years. Genotypes differed in their response at both stages of plant growth for grain yield, days to heading, excised-leaf water loss, leaf membrane stability and relative water content under drought stress. Under irrigated conditions differences in the genotypes for water retention traits were not clear. There were significant genotype×environment interactions. Terminal drought stress resulted in reduced mean values and variability for all characters. The varieties WH 147 and WH 147(U) showed a combination of drought resistance, water retention and high grain yield, whereas C 306, Kharchia 65 and Hindi 62 showed a lower percentage injury in plasma membrane and better water retention in the leaves. Drought resistance index was associated with other characters.
Patient-Reported Outcomes for Large Bipolar Osteochondral Allograft Transplantation in Combination with Realignment Osteotomies for the Knee

Abstract Effective treatment for bipolar articular cartilage lesions in the knee remains a clinical challenge. Lower extremity malalignment is a risk factor for treatment failures, which can be addressed by tibial or femoral osteotomy. The purpose of this study was to compare outcomes among patients who underwent knee joint restoration by osteochondral allograft (OCA) transplantation with concurrent or staged realignment osteotomy. With Institutional Review Board approval, patients undergoing bipolar OCA transplantation with concurrent or staged distal femoral osteotomy (DFO) or high tibial osteotomy (HTO) were analyzed. Patients were categorized by osteotomy type (DFO and HTO) and timing (concurrent and staged). Patient-reported outcome measures (PROMs), revisions, failures, and complications were examined preoperatively (baseline), 3, 6, 12, and 24 months after OCA transplantation; change scores from preoperative values were used for analysis. A total of 23 patients met inclusion criteria (15 males); 13 (56.5%) received HTO (5 concurrent), while 10 (43.5%) received DFO (5 concurrent). There were no significant differences in complication rates between concurrent and staged osteotomies. Primary bipolar OCA transplantation with osteotomy was associated with successful outcomes in 70% of patients; four patients underwent revision (17.4%) and three (13.0%) failed and were treated by total knee arthroplasty. Further, the four patients undergoing revision met functional criteria for success at final follow-up, resulting in a 2-year functional survival rate of 87.4%. Aside from Patient-Reported Outcomes Measurement Information System (PROMIS) physical function, all PROMs for concurrent and staged osteotomies improved from baseline to 2 years postoperatively. Concurrent osteotomies of both types were associated with significantly lower pain scores at 12 months (p = 0.04), compared with staged osteotomies. Apart from Single Assessment Numerical Evaluation (SANE), more PROM improvement was observed for concurrent osteotomies at 2 years. Improvements in PROMs for patients undergoing OCA transplantation combined with osteotomy were observed at 2-year follow-up. PROMs for concurrent osteotomy were consistently greater than staged osteotomy, lending support to addressing lower extremity malalignment with bipolar OCA transplantation in the knee during a single surgery when possible.
A Single Intraventricular Injection of VEGF Leads to Long-Term Neurotrophic Effects in Axotomized Motoneurons

Abstract Vascular endothelial growth factor (VEGF) has been recently demonstrated to induce neuroprotective and synaptotrophic effects on lesioned neurons. Hitherto, the administration of VEGF in different animal models of lesion or disease has been conducted following a chronic protocol of administration. We questioned whether a single dose of VEGF, administered intraventricularly, could induce long-term neurotrophic effects on injured motoneurons. For this purpose, we performed in cats the axotomy of abducens motoneurons and the injection of VEGF into the fourth ventricle in the same surgical session and investigated the discharge characteristics of axotomized and treated motoneurons by single-unit extracellular recordings in the chronic alert preparation. We found that injured motoneurons treated with a single VEGF application discharged with normal characteristics, showing neuronal eye position (EP) and velocity sensitivities similar to control, thereby preventing the axotomy-induced alterations. These effects were present for a prolonged period of time (50 d) after VEGF administration. By confocal immunofluorescence we also showed that the synaptic stripping that ensues lesion was not present, rather motoneurons showed a normal synaptic coverage. Moreover, we demonstrated that VEGF did not lead to any angiogenic response pointing to a direct action of the factor on neurons. In summary, a single dose of VEFG administered just after motoneuron axotomy is able to prevent for a long time the axotomy-induced firing and synaptic alterations without any associated vascular sprouting. We consider that these data are of great relevance due to the potentiality of VEGF as a therapeutic agent in neuronal lesions and diseases.
Soluble PD1 levels are increased with disease activity in paediatric onset autoimmune hepatitis and inflammatory bowel disease

Abstract Introduction: Immune mediated liver diseases entail a broad category which are associated with increased morbidity and mortality amongst the paediatric population. Programmed Death 1 (PD1) is an inhibitory receptor mainly expressed by T cells, and when activated shed into plasma as soluble PD1(sPD1). The AIM of this study was to evaluate sPD1 levels in plasma of paediatric patients with Autoimmune Hepatitis (AIH), Primary Sclerosing Cholangitis (PSC), AIH and PSC overlap, Inflammatory Bowel Disease (IBD) alone, and concurrent PSC/IBD and AIH/IBD in order to identify a biomarker to response or predict relapse verses remission. Methods: Plasma samples were collected from 41 paediatric patients. AIH patients were further categorized into active, incomplete responders and responders, based on response to standard therapy. sPD1 levels were measured and compared between PSC, PSC/AIH, IBD alone, PSC/IBD and AIH/IBD patients and between active AIH, incomplete responders and responders. Flow cytometry was performed to further analyze CD45RA+, CD3CD4, CD8, CCR7, CXCR3, CD38 and PD1. Results: In the AIH group, those with active disease demonstrated a significantly higher sPD1 levels in comparison to responders (*p > .001). However, the incomplete responders didn’t show a reduction in sPD1 in comparison to active AIH and patients with IBD alone. Interestingly, patients with PSC showed significantly lower level of sPD1 compared to active AIH (*p < .002), whereas, patients with PSC in conjunction with AIH (*p < .006) or IBD (*p < .02) demonstrated a significant increase in sPD1. In addition, we have observed increased levels of circulating CD4 and CD8 bound PD1 in active AIH but not in PSC or responders suggesting T cells activation. CD4+ PD1 double positive cells demonstrated increased expression of CXCR3. Thus, suggesting the activation of PD1 + T cells is mediating through CXCR3 in Autoimmune hepatitis. Conclusions: Our study demonstrates that sPD1 levels correlate with active disease state of AIH and IBD. sPD1 levels did not correlate with PSC. However, PSC in conjunction with AIH or IBD showed higher levels of sPD1. This suggests that T cell activation plays a critical role in active AIH and IBD but not in PSC. Soluble PDI levels could be used as a clinical biomarker to assess response in patients with AIH and for prospectively monitoring PSC patients for development of IBD or AIH.
Chemical Composition of Selected Forages and Spices and the Effect of These Spices on In vitro Rumen Degradability of Some Forages

Spices can be used as novel supplements to enhance the utilization of low quality forages (LQF) and reduce nutrient wastage by ruminant animals. However, it is essential to characterize these spices alongside LQF before testing their potential use as supplements in ruminant diets. This study characterized four spices (cinnamon, cumin, clove and turmeric) alongside three forages (rice straw, wheat straw and hay) for their chemical components before evaluating their effect at four different doses (0, 10, 30 and 90 mg/g forage DM) on the in vitro rumen degradability of dry matter (DM) (IVD) and organic matter (OM) (IVOMD) of these forages at various incubation times. It appeared that some spices could provide complementary nutrients which could improve the utilization of LQF where hay had better chemical composition than the other two forages. Cumin contained more crude protein (CP), ether extract and mineral contents whereas turmeric contained more soluble sugars than the other spices. Cinnamon was least acceptable as a ruminant supplement due to its higher condensed tannin and saponin and lower CP and mineral contents. The IVD and IVOMD were highest for hay and lowest for wheat straw with all spices at all incubation times (p<0.001). Due to relatively better nutrient profiles, cumin and turmeric had greater effect on IVD and IVOMD of the forages. In contrast, cinnamon had negative effects on IVD and IVOMD. IVD and IVOMD were greater at 10 mg/g than at other levels of most spices suggesting that using certain amounts of spices can increase forage degradability. However, the choice of a spice will depend upon the forage type being offered to ruminants. Further studies will examine the effect of these spices on fermentation profile, methane production and nitrogenous loss by ruminants.
When A Combination of Nudges Decreases Sustainable Food Choices Out-of-Home—The Example of Food Decoys and Descriptive Name Labels

This paper reports results from three consecutive studies focusing on the comparison of the effectiveness of different nudges and their combinations to increase sustainable food choices out of the home. The nudges compared are the use of descriptive name labels (DNLs) for the most sustainable dish of a choice set (menu) and the decoy effect (DE), created by adding a less attractive decoy dish to a more attractive target dish with the goal of increasing the choice frequency of the target dish. In the literature, both nudges have been found to influence consumers’ choices. In the first study, six category names of sustainability indicators were deduced from a focus group. These were tested with 100 students to identify the most attractive DNLs. Study II, a randomized choice study (n = 420), tested the DE, the DNLs and a combination of the DNLs and the DE used on four different dishes in a university canteen. In study III, 820 guests of a business canteen voted during four weeks for the special meals of the following week (identical to the four choice sets displayed in study II). Results indicate that the combination of DNLs and the DE is not recommended for fostering sustainable food choices. Pure DNLs were more efficient in increasing the choice frequency of the more sustainable meal, whereas the decoy effect resulted in decreased choice frequencies. Regional and sustainable DNLs were favoured by consumers.
Sex-related growth patterns in a caecilian amphibian (genus Ichthyophis): evidence from laboratory data

Post-metamorphic growth patterns were analysed in the tropical caecilian amphibian Ichthyophis cf. kohtaoensis (Amphibia: Gymnophiona) experimentally in captivity over 6 years. Two questions were addressed. (1) Does this Ichthyophis display sexual dimorphism for size? (2) Do ichthyophiid caecilians express an indeterminate growth pattern? Total length did not differ between sexes in the first, second or third year after metamorphosis. In the fourth, fifth and sixth years, females were significantly larger than males. The index of sexual size dimorphism increased from zero in the first year after metamorphosis to 0.104 in the sixth year. Relative growth rates of total length were different for each sex. In the first two growth seasons males grew at higher rates, while from the third growth season females grew faster than males. In general, growth rates increased from the first to the second year after metamorphosis and decreased dramatically after both sexes became mature. As all Ichthyophis in this study grew constantly throughout the first 6 years after metamorphosis, indeterminate growth probably occurs in caecilians as reported for frogs and salamanders. Additionally, growth curves for both sexes of Ichthyophis cf. kohtaoensis were estimated based on the von Bertalanffy model.
Efeito da safra vitícola na composição da uva, do mosto e do vinho Isabel da Serra Gaúcha, Brasil

Variation of the climatic conditions among years is one of the most important factors having influence on wine composition and quality. This work evaluated the effect of the 1999, 2000, and 2001 vintages of the Isabel grape, must, and wine composition from Serra Gaucha, Brazil. In this way, twenty-two grape growers from 11 communities of this region were taken. From each grower, 60kg of ripened grapes were sampled from which evaluations on grape and must were performed and microvinifications were made. Results showed that the vintage had a significant effect on cluster and berry weight, but there was no effect on stem/cluster weight ratio. In the same way, there was differences on the majority of the variables of the must of Isabel studied, exception to the °Brix/total acidity ratio. It also had effect on the majority of the variables of the wine, exception to the K, Mn, Cu, and Rb cations. In general, the 1999 vintage was better, because it showed more adequate parameters for total acidity, dry extract, reduced dry extract, alkalinity of ashes, tannins, anthocyanins, and glycerol, variables that determine wine structure and color, important factors for wine quality.