Miracle-dz/UniFAR-FTUs huggingface dataset:
Platypodidae under scrutiny

The historical status of the family Platypodidae is reviewed and the family is revised. Results of a cladistic analysis based on 35 terminal taxa and 80 adult morphological characters show that the current placement of Platypodidae makes the subfamily Scolytinae paraphyletic. Moreover, several important genera included in Scolytinae are shown to be members of Cossoninae (i.e. the placement of Protoplatypus Wood and Phylloplatypus Kato in Cossoninae is confirmed). Based on these results, the status of Platypodidae as a family and subfamily is rejected, Scolytinae thereby becoming a monophyletic taxon. Araucarius groups in Scolytinae instead of Cossoninae in the analysis on a single step only, but it is suggested that it be retained in Cossoninae until this subfamily is submitted to a similar phylogenetic study. Three genera and four species of Cossoninae are described as new: Dobionus Kuschel, gen. nov.: type species D. araucarinus Kuschel, sp. nov. (with the inclusion of D. brachyrhinus (Montrouzier)); Coptonus Kuschel, gen. nov.: type species C. fijianus Kuschel, sp. nov. (with the inclusion of C. papuanus Kuschel, sp. nov.) and Dissostomus Kuschel, gen. nov.: type species D. hornabrooki Kuschel, sp. nov.
Revision of the Quantification of Market Risk in the Basel III Regulatory Framework

The purpose of our study is to provide an overview of the revisions made to the Basel III regulatory framework in the aftermath of the 2007 crisis, with regard to measuring the risk associated with positions included in the trading book. The calculation of the regulatory capital requirement (i.e. the capital to be earmarked for covering the losses of trading book portfolios exposed to market risk) is based on the value-at-risk (VaR) to date. The literature pointed out the weaknesses of VaR as early as the turn of the millennium, and the financial crisis of 2007 only confirmed the inadequacy of the previous system. Nevertheless, moving the Basel regulatory framework to a new system of risk measurement was only put on the agenda after a significant delay. Formulating the details of the changes affecting the trading book has gained momentum in recent months, resulting in a series of consultative documents, issued by the Committee, which constitute the foundation for the impending new recommendations.
Hardseededness in annual clovers: variation between populations from wet and dry environments

Annual legumes rely on hardseededness, a form of seed dormancy, to spread the risk of mortality associated with germination and to encourage germination at the optimal time in a season. This paper examines seed softening strategies of a number of clover (Trifolium) species collected over a range of environments. Three hypotheses are tested. The first is that within species, long-term hardseededness increases with aridity due to the greater chance of failure to reproduce in dry environments. It is tested by comparing seed softening patterns of populations of a number of clover species collected from a range of environments. The second hypothesis, that annual legumes from dry environments have a smaller subset of seed softening strategies than legumes from wetter environments, is tested by comparing the range of seed softening patterns from all species found at collection sites. The third hypothesis is that within-year patterns of seed softening that prevent germination after summer rainfall may partially substitute for long-term hardseededness. It is tested by examining the relationship between within-year hardseededness and between-year hardseededness. Accessions of the same species from different collection sites differed in both within-year pattern of seed softening and long-term hardseededness but there was little evidence that these differences were between ecotypes. Different species from the same collection site did not have similar seed softening strategies, and seed softening strategies of clovers from dry sites were as variable as those from wetter environments. Within-year pattern of seed softening does not appear to substitute for between-year hardseededness as a dormancy strategy.
Systematic significance of achene morphology in Soroseris, Syncalathium and Parasyncalathium (Asteraceae: Cichorieae)

The systematic significance of the morphological structure of achenes in the Himalayan-Tibetan Plateau endemic genera Soroseris, Syncalathium and Parasyncalathium is described and discussed. The achene surface sculpturing of 15 samples representing 13 species of the three genera was investigated using scanning electronic microscopy (SEM) to evaluate inter- and intrageneric relationships of the three genera. Characters such as cell arrangement, shape of the epidermis, type of ornamentation of the outer cell wall and degree of wax development are described. The results show that characters such as the shape of the epidermis and the type of ornamentation of the outer cell wall are distinct between the three genera and useful for species-level classification. Parasyncalathium souliei differs from Syncalathium, in which it has traditionally been placed, in the short, stout beak of the achene and especially in the obscure outline of the epidermal cells and their long acuminate, steeple-like, end walls. Combined with karyological and molecular data, the differences in achene morphology and sculpturing further support our recognition of Parasyncalathium as distinct from Syncalathium. The achene characters are not only useful for assessing relationships, but are also useful for delimiting species. (c) 2013 The Linnean Society of London, Botanical Journal of the Linnean Society, 2013, 173, 476-486.
Fish, Ribeirão do Feijão Basin, São Carlos, São Paulo, Brazil

The Ribeirao do Feijao Basin is the main water supplier for the municipality of Sao Carlos, in the state of Sao Paulo, Brazil. Field work was carried out from February to November 2005, using sieves, casting nets, and drag nets. A total of 7,286 specimens of fish were collected, belonging to 30 species, 13 families and six orders. The richest order was Characiformes with 14 species, followed by Siluriformes with seven.
Tetrazolium test to evaluate the viability of oil radish seeds = Teste de tetrazólio para avaliação da viabilidade de sementes de nabo forrageiro

The use of tetrazolium test is important in the evaluation of seeds lot quality and it has been adopted for vigor and viability identification for several species. The interest on the production of oil radish is increasing since the seeds were considered a good source of oil for biofuel production. The development of the tetrazolium test methodology for seeds of this species can improve the seed quality control process, and additionally will provide information for the characterization of remaining seeds (dead or dormant) in the germination tests. To verify the ideal conditions to tetrazolium test was conducted two experiments. At the first, oil radish seeds cultivar CATI AL-1000, lots from 2001 and 2006 were submitted to imbibition between paper in water for 6 hours. After the longitudinal cut in the longest direction, the seeds were immersed in the tetrazolium solution at the concentrations of 0,075%, 0,5% and 1% at 25°C for 3h, 12h and 18h. In the second experiment, oil radish seeds cultivar CATI AL-1000 lot from 2005 and IPR 116 cultivar, lots from 2004 and 2005 were immersed in the concentrations of ,1%; 0,2%; 0,3% and 0,4% of tetrazolium solution for 12 hours at a 25°C, 30°C, 35°C and 40°C. At the first experiment was observed the necessity of test intermediate concentrations between 0,075% and 0,5%, since with 0,075% the seeds stained weakly and with 0,5% the test results, were overestimated. In the second experiment was observed that the 0,3% concentration at 30°C can be recommended for the utilization of tetrazolium test to evaluation of oil radish seeds viability.
The Possible Improving Effects of γ-Irradiated and/or Extruded Soy Flour on Hypercholesterolemic Rats

Hypercholesterolemia is serious conditions that can cause fatal complications without careful management. Among the dietary supplementation with functional food, soybeans possess variety of antioxidant compounds that may lower incidence of hypercholesterolemia and degenerative cardiovascular disease. Thus, the purpose of this study is to determine the effect of gammairradiated and/or extruded soy flour on hypercholesterolemic rats. Processing of soy flour by γ-irradiation and/or extrusion reduced the amount of antinutritional factors such as tannin and trypsin inhibitor and resulted in different changes in the total amino acids and fatty acid contents. The animals maintained on the HCD showed remarkable decrease in the level of HDL-C associated with significant increase in the values of serum total lipid, total cholesterol, triglyceride, LDL-C, vLDL-C and the risk ratio in addition to serum concentration of urea, creatinine and uric acid in comparison with those of the control group. However, dietary supplementation of raw and treated soy flour resulted in reduction in the bad changes induced by HCD in the above mentioned parameters. In conclusion, treated soy flour supplementation in diet of rats pointed out to its hypocholesterolemic effect and its ability to improve lipid profile and kidney function of hypercholesterolemic rats.
River rehabilitation and fish populations: assessing the benefit of instream structures

Summary 1 River rehabilitation schemes are now widespread in the UK and elsewhere, but there have been few systematic assessments of their ecological effect, particularly on target organisms such as fish. Fish populations were therefore assessed in 13 lowland rivers using point abundance measures and depletion electrofishing. Each river was sampled in two reaches, respectively containing a small-scale rehabilitation scheme (artificial riffles or flow deflectors) and an unrehabilitated control reach. Detailed geomorphological surveys were undertaken for the two study reaches in each river to assess the physical and hydraulic effect of rehabilitation. 2 There were large qualitative and quantitative differences among rivers and some had relatively impoverished fish faunas. Overall, total fish abundance, species richness, diversity and equitability were not significantly different between rehabilitated and control reaches. This was true for both the sampling methods used. Bullhead Cottus gobio and stone loach Barbatula barbatula tended to be more abundant in rehabilitated reaches, but this was significant only for artificial riffles. There was a significant between-year difference in fish abundance. 3 In general, rehabilitation schemes increased depth and flow heterogeneity, and fish species richness and diversity appeared to respond positively to increased flow velocity in restored reaches. However, there were few significant relationships between the fish fauna and physical variables, indicating that increasing physical (habitat) heterogeneity does not necessarily lead to higher biological diversity. We therefore caution against the use of physical responses to rehabilitation as a surrogate or reliable predictor of ecological response. 4 The weak response of fishes to rehabilitation may have been because the schemes were inappropriate in design and scale for low-gradient rivers. Furthermore, fish assemblages may have lacked the potential for recovery because of poor water quality and/or because the schemes were isolated within longer sections of degraded river. More extensive and directed biological monitoring is essential to improve understanding and enable future improvements in the design of schemes and the selection of sites with greater potential for successful rehabilitation. 5 Synthesis and applications. From this substantial sample of lowland rivers, there is little evidence of any general benefit to fish of small-scale instream structures in river rehabilitation. From present ecological knowledge it may be that resources would be better devoted to promoting the development of lateral and off-channel habitats within the river corridor. Physical restoration will be most effective when used alongside other strategies to augment fish populations such as water quality management.
Synergistic effect of CPPU and benzyladenine on embryo rescue in six stenospermocarpic cultivars of grapevine

In ovulo/embryo culture technique has been used to recover hybrids from seedless grapevines. The present investigation was carried out to study the influence of pre-bloom sprays of N-(2-chloro-4-pyridyl)-N´-phenylurea (CPPU) - a synthetic cytokinin, and N6-benzyladenine (BA) supplemented in culture media on embryo recovery in six stenospermocarpic grapevine cultivars. The results showed synergistic effect of CPPU and BA on embryo recovery. Though a CPPU spray alone increased embryo recovery in four out of six cultivars tested, the efficiency was enhanced several fold on culture of excised ovules on media supplemented with BA. The percentage of embryo recovery also depended on BA concentration and varied among six cultivars indicating a genotypic influence as well. Germination percentage of rescued embryos varied among the six cultivars and mostly corresponded with embryo recovery. Germinated embryos developed into normal plantlets. Present study demonstrates that spraying of panicles with CPPU and incorporation of BA in the ovule culture medium can enhance the embryo recovery in stenospermocarpic cultivars of grapevine.
Improvement of Bacterial Blight Resistance of ‘Minghui 63’, an Elite Restorer Line of Hybrid Rice, by Molecular Marker‐Assisted Selection

'Minghui 63' is a restorer line widely used in hybrid rice production in China. However, this line has become increasingly susceptible to bacterial blight (BB), resulting in a rapid decline of its use in rice production. The objective of this study was to improve the BB resistance of Minghui 63 by introgressing Xa21, a broad-spectrum BB resistance gene, into Minghui 63 by molecular marker-assisted selection (MAS). A polymerase chain reaction (PCR)-based MAS system was established consisting of a marker that is a part of Xa21, a marker located at 0.8 centimorgans (cM) from the Xa21 locus on one side, and a marker at 3.0 cM from the gene on the other side. A total of 128 restriction fragment length polymorphism (RFLP) markers, evenly distributed on the 12 chromosomes, were used to recover the genetic background of Minghui 63. The resulting improved version of Minghui 63, or Minghui 63(Xa21)', was exactly the same as the original except for a fragment of less than 3.8 cM in length surrounding the Xa21 locus. Both Minghui 63(Xa21) and its hybrid with 'Zhenshan 97A' referred to as 'Shanyou 63(Xa21)' showed the same spectrum of BB resistance as the donor parent. Field examination of a number of agronomic traits showed that Minghui 63(Xa21) and Shanyou 63(Xa21) were identical to Minghui 63 and Shanyou 63, when there was no disease stress. Under heavily diseased conditions, Minghui 63(Xa21) showed significantly higher grain weight and spikelet fertility than Minghui 63, and Shanyou 63(Xa21) was significantly higher than Shanyou 63 in grains per panicle, grain weight, and yield.
Selection for growth, muscling and fatness alters the maternal performance and intermediary metabolism of Merino ewes

There is growing interest in selectively breeding Merinos with higher growth and muscling and lower fatness. The effects of selection for these traits on ewe intermediary metabolism, body composition, reproduction and milk production and on lamb birthweight, survival and growth were studied in a series of experiments and analyses. Ewes with higher genetic propensity for early growth had higher mature weight, reproductive rate, lamb birthweight, ewe milk production and lamb growth rate. Ewes with higher growth also had a higher circulating level of growth hormone during lactation. Ewes with higher genetic propensity for muscling had a higher reproductive rate and produced lambs that were lighter at birth, but this did not result in lower lamb survival. Ewes with higher muscling maintained a higher condition score which may be at least partly attributed to a lower response to adrenaline at the level of the muscle in these higher muscled ewes. Similarly higher muscled ewes had lower growth hormone concentration in lactation which would result in lower mobilisation of tissues. In addition peripheral tissues were less responsive to insulin in high muscled ewes and blood glucose levels were also higher during the non-breeding state in high muscled ewes. The genetic fatness of ewes was positively associated with lamb birthweight but only when nutrition was restricted suggesting that ewes with a higher genetic propensity for fatness can buffer lamb birthweight under periods of poor nutrition. Ewes with higher genetic fatness had lower circulating growth hormone and a greater response to insulin providing potential mechanisms for the observed higher fatness. Furthermore, response to adrenaline at the level of liver was greater in ewes with higher fatness suggestive of a higher capacity for gluconeogenesis. The combined results of this work suggest that actively selecting Merino ewes to have higher growth, muscling and fatness is likely to have positive reproduction and therefore economic outcomes.
Changes in the Carrion/Hooded Crow Hybrid Zone and the Possible Importance of Climate

During the last Ice Age the European Crow population was forced to retreat to ‘refugia’ in the Balkans and the Iberian Peninsula. These isolated groups developed striking plumage differences, the grey-andblack Hoodie in the east, and the all-black Carrion in the west. Voice and general behaviour changed but little, so that when the ice retreated and the separate groups expanded to meet in middle Europe, they were able to interbreed and produce fertile hybrids, but only over a narrow zone of overlap. Recent climatic changes have brought about a marked shift in the position of this zone in Scotland.
Mathematical modelling of vascular development in zebrafish

The Notch signalling pathway is pivotal in ensuring that the processes of arterial specification, angiogenic sprouting and haematopoietic stem cell (HSC) specification are correctly carried out in the dorsal aorta (DA), a primary arterial blood vessel in developing vertebrate embryos. Using the zebrafish as a model organism, and additional experimental observations from mouse and cell line models to guide mathematical modelling, this thesis aims to better understand the mechanisms involved in the establishment of a healthy vasculature in the growing embryo. We begin by studying arterial and HSC specification in the zebrafish DA. Mathematical models are used to analyse the dose response of arterial and HSC genes to an input Notch signal. The models determine how distinct levels of Notch signalling may be required to establish arterial and HSC identity. Furthermore, we explore how Delta-Notch coupling, which generates salt-and-pepper patterns, may drive the average gene expression levels higher than their homogeneous levels. The models considered here can qualitatively reproduce experimental observations. Using laboratory experiments, I was able to isolate DA cells from transgenic zebrafish embryos and generate temporal gene expression data using qPCR. We show that it is possible to fit ODE models to such data but more reliable data and a greater number of replicates at each time point is required to make further progress. The same VEGF-Delta-Notch signalling pathway is involved in tip cell selection in angiogenic sprouting. Using an ODE model, we rigourously study the dynamics of a VEGF-Delta-Notch feedback loop which is capable of amplifying differences betwen cells to form period-2 spatial patterns of alternating tip and stalk cells. The analysis predicts that the feeback strengths of Delta ligand and VEGFR-2 production dictate the onset of patterning in the same way, irrespective of the parameter values used. This model is extended to incorporate feedback from filopodia, growing in a gradient of extracellular VEGF, which are capable of facilitating tip cell selection by amplifying the resulting patterns. Lastly, we develop a PDE model which is able to properly account for VEGF receptor distributions in the cell membrane and filopodia. Receptors can diffuse and be advected due to domain growth, defined by a constitutive law, in this model. Our analysis and simulations predict that when receptor diffusivity is large, the ODE model for filopodia growth is an excellent approximation to the PDE model, but that for smaller diffusivity, the PDE model provides valuable insight into the pattern forming potential of the system.
Induction and expression of peroxidase in tomato is age-dependent

Peroxidases (POXs) are actively synthesised under stress conditions and induced by biotic/abiotic elicitors. Their age-regulated expression in plants has been a matter of investigation during recent times. The present study focuses on studying the expression of POX at different stages of growth and variation in its inducibility by aqueous extract of Azadirachta indica (neem) fruits. Tomato plants at 6, 8, 10 and 12 weeks were chosen for the study. The third nodal leaf of each plant was treated with neem fruit extract alone or in combination with Pseudomonas syringae pv. tomato. Sampling was performed at an interval of 24 h up to five days and after two weeks of treatment, from both the treated and distal untreated nodes of the plants. POX activity and its isoforms were analysed. The results demonstrated that POX expression and its inducibility by the biotic inducer (neem fruit extract) varies with age of the plant.
Effect of the Presence or Absence of Corn on Common Lambsquarters (Chenopodium album L.) and Barnyardgrass [Echinochloa crus-galli (L.) Beauv.] Emergence1

A 3-yr study was conducted to establish if the presence of corn had an effect on the emergence patterns and total weed seedling density under growing conditions in southwestern Québec. Weed seedling emergence was monitored in permanent quadrats throughout the growing season in the presence and absence of growing corn. Common lambsquarters and barnyardgrass were prevalent in most site-years. The presence of corn did not affect the patterns of common lambsquarters and barnyardgrass emergence nor their total weed seedling density except in 1994. Corn canopy was probably not sufficiently developed to affect light levels or soil temperature needed for weed germination and, consequently, seedling emergence. In 1994, in the absence of corn, some soil crusting was observed on a fine-textured soil, and the total number of seedlings was reduced. The results of these weed emergence studies in corn can be extended to other crops growing with wide row spacing and relatively slow canopy closure similar to those of grain corn. Nomenclature: Barnyardgrass, Echinochloa crus-galli (L.) Beauv. #3 ECHCG; common lambsquarters, Chenopodium album L. # CHEAL; corn, Zea mays L. ‘Pioneer 3921’. Additional index words: Amaranthus retroflexus L. , AMARE, crop competition, redroot pigweed, weed density, weed seedling emergence. Abbreviations: CHU, corn heat units; PAR, photosynthetically active radiation.