Miracle-dz/UniFAR-FTUs huggingface dataset:
Longitudinal Study of Functional Reinnervation of the Denervated Skin by Collateral Sprouting of Peptidergic Nociceptive Nerves Utilizing Laser Doppler Imaging

Restitution of cutaneous sensory function is accomplished by neural regenerative processes of distinct mechanisms following peripheral nerve lesions. Although methods available for the study of functional cutaneous nerve regeneration are specific and accurate, they are unsuitable for the longitudinal follow-up of the temporal and spatial aspects of the reinnervation process. Therefore, the aim of this study was to develop a new, non-invasive approach for the longitudinal examination of cutaneous nerve regeneration utilizing the determination of changes in the sensory neurogenic vasodilatatory response, a salient feature of calcitonin gene-related peptide-containing nociceptive afferent nerves, with scanning laser Doppler flowmetry. Scanning laser Doppler imaging was applied to measure the intensity and spatial extent of sensory neurogenic vasodilatation elicited by the application of mustard oil onto the dorsal skin of the rat hindpaw. Mustard oil induced reproducible and uniform increases in skin perfusion reaching maximum values at 2–4 min after application whereafter the blood flow gradually returned to control level after about 8–10 min. Transection and ligation of the saphenous nerve largely eliminated the vasodilatatory response in the medial aspect of the dorsal skin of the hindpaw. In the 2nd to 4th weeks after injury, the mustard oil-induced vasodilatatory reaction gradually recovered. Since regeneration of the saphenous nerve was prevented, the recovery of the vasodilatatory response may be accounted for by the collateral sprouting of neighboring intact sciatic afferent nerve fibers. This was supported by the elimination of the vasodilatatory response in both the saphenous and sciatic innervation territories following local treatment of the sciatic nerve with capsaicin to defunctionalize nociceptive afferent fibers. The present findings demonstrate that this novel technique utilizing scanning laser Doppler flowmetry to quantitatively measure cutaneous sensory neurogenic vasodilatation, a vascular response mediated by peptidergic nociceptive nerves, is a reliable non-invasive approach for the longitudinal study of nerve regeneration in the skin.
Experimental Evidence That Permafrost Thaw History and Mineral Composition Shape Abiotic Carbon Cycling in Thermokarst-Affected Stream Networks

Mounting evidence suggests that biogeochemical processing of permafrost substrate will amplify dissolved inorganic carbon (DIC = Σ[CO2,HCO3-,CO32-]) production within Arctic freshwaters. The effects of permafrost thaw on DIC may be particularly strong where terrain subsidence following thaw (thermokarst) releases large amounts of sediment into fluvial networks. The mineral composition and chemical weathering of these sediments has critical yet untested implications for the degree to which streams represent a source of CO2 to the atmosphere vs. a source of bicarbonate to downstream environments. Here, we experimentally determine the effects of mineral weathering on fluvial CO2 by incubating sediments collected from three retrogressive thaw slump features on the Peel Plateau (NWT, Canada). Prehistoric warming and contemporary thermokarst have exposed sediments on the Peel Plateau to varying degrees of thaw and chemical weathering, allowing us to test the role of permafrost and substrate mineral composition on CO2:HCO3- balance. We found that recently-thawed sediments (within years to decades) and previously un-thawed tills from deeper permafrost generated substantial amounts of solutes and DIC. These solutes and the mineralogy of sediments suggested that carbonate weathering coupled with sulfide oxidation was a net source of abiotic CO2. Yet, on average, more than 30% of this CO2 was converted to bicarbonate via carbonate buffering reactions. In contrast, the mineralogy and geochemical trends associated with sediments from the modern and paleo-active layer, which were exposed to thaw over longer timescales than deeper permafrost sediments, more strongly reflected silicate weathering. In treatments with sediment from the modern and paleo-active layer, minor carbonate and sulfide weathering resulted in some DIC and net CO2 production. This CO2 was not measurably diminished by carbonate buffering. Together, these trends suggest that prior exposure to thaw and weathering on the Peel Plateau reduced carbonate and sulfide in upper soil layers. We conclude that thermokarst unearthing deeper tills on the Peel Plateau will amplify regional inorganic carbon cycling for decades to centuries. However, CO2 consumption via carbonate buffering may partly counterbalance CO2 production and release to the atmosphere. Regional variability in the mineral composition of permafrost, thaw history, and thermokarst intensity are among the primary controls on mineral weathering within permafrost carbon-climate feedbacks.
Phylogenomics Resolves the Relationships within Antennaria (Asteraceae, Gnaphalieae) and Yields New Insights into Its Morphological Character Evolution and Biogeography

Abstract Antennaria are dioecious perennial herbs distributed mainly in the Holarctic Region, with their major center of diversity in the Rocky Mountains of Western North America. The genus comprises 33 known sexual diploid/tetraploid species and at least five polyploid agamic complexes which mostly reproduce by forming asexual seeds. We performed a phylogenetic reconstruction of the 31 sexually-reproducing Antennaria species using a novel target enrichment method that employs custom capture probes designed to work across Asteraceae. Both concatenated and coalescent-based analyses of DNA sequence data from hundreds of nuclear loci recovered Antennaria as a monophyletic group except for the long-disputed species, Antennaria linearifolia, which was recovered outside of the genus. Antennaria was further resolved into three distinct, major lineages. Analysis of ancestral state reconstruction of 12 taxonomically important morphological characters elucidated patterns of character evolution throughout the genus. Estimations of ancestral geographic ranges and molecular dating analyses demonstrated the Rocky Mountain region, including the Vancouverian Province, as the center of origin for the genus Antennaria, around 5.8 MYA. Subsequent dispersals of Antennaria into the Arctic and Appalachian provinces, Canadian provinces, and Eurasia took place roughly 3.2 MYA, 2.4 MYA, and 1.6 MYA, respectively. Biogeographical stochastic mapping indicated that 51.4% of biogeographical events were based on within-area speciation. The remaining 48.6% of the events were divided into two types of dispersals: 1) range expansion dispersals (anagenic, 37%), and 2) founder/jump dispersals (cladogenic, 11.6%). Our results provide a framework for future evolutionary studies of Antennaria, including speciation, origin(s) of polyploidy, and agamospermy in the genus.
Pain and social decision-making: New insights from the social framing effect

This paper focuses on the social function of painful experience as revealed by recent studies on social decision-making. Observing others suffering from physical pain evokes empathic reactions that can lead to prosocial behavior (e.g., helping others at a cost to oneself), which might be regarded as the social value of pain derived from evolution. Feelings of guilt may also be elicited when one takes responsibility for another’s pain. These social emotions play a significant role in various cognitive processes and may affect behavioral preferences. In addition, the influence of others’ pain on decision-making is highly sensitive to social context. Combining neuroimaging techniques with a novel decision paradigm, we found that when asking participants to trade-off personal benefits against providing help to other people, verbally describing the causal relationship between their decision and other people’s pain (i.e., framing) significantly changed participants’ preferences. This social framing effect was associated with neural activation in the temporoparietal junction (TPJ), which is a brain area that is important in social cognition and in social emotions. Further, transcranial direct current stimulation (tDCS) on this region successfully modulated the magnitude of the social framing effect. These findings add to the knowledge about the role of perception of others’ pain in our social life.
Efficacy, Safety, and Economics of Intravenous Levetiracetam for Status Epilepticus: A Systematic Review and Meta-Analysis

Objective To evaluate efficacy, safety, and economics profiles of intravenous levetiracetam (LEV) for status epilepticus (SE). Methods We searched PubMed, Embase, the Cochrane Library, Clinicaltrials.gov, and OpenGrey.eu for eligible studies published from inception to June 12th 2019. Meta-analyses were conducted using random-effect model to calculate odds ratio (OR) of included randomized controlled trials (RCTs) with RevMan 5.3 software. Results A total of 478 studies were obtained. Five systematic reviews (SRs)/meta-analyses, 9 RCTs, 1 non-randomized trial, and 27 case series/reports and 1 economic study met the inclusion criteria. Five SRs indicated no statistically significant difference in rates of seizure cessation when LEV was compared with lorazepam (LOR), phenytoin (PHT), or valproate (VPA). Pooled results of included RCTs indicated no statistically significant difference in seizure cessation when LEV was compared with LOR [OR = 1.04, 95% confidence interval (CI) 0.37 to 2.92], PHT (OR = 0.90, 95% CI 0.64 to 1.27), and VPA (OR = 1.47, 95% CI 0.81 to 2.67); and no statistically significant difference in seizure freedom within 24 h compared with LOR [OR = 1.83, 95% CI 0.57 to 5.90] and PHT (OR = 1.08, 95% CI 0.63 to 1.87). Meanwhile, LEV did not increase the risk of mortality during hospitalization compared with LOR (OR = 1.03, 95% CI 0.31 to 3.39), PHT (OR = 0.89, 95% CI 0.37 to 2.10), VPA (OR = 1.28, 95% CI 0.32 to 5.07), and placebo (plus clonazepam, OR = 0.73, 95% CI 0.16 to 3.38). LEV had lower need for artificial ventilation (OR = 0.23, 95% CI 0.06 to 0.92) and a lower risk of hypotension (OR = 0.15, 95% CI 0.03 to 0.84) compared to LOR. A trend of lower risk of hypotension and higher risk of agitation was found when LEV was compared with PHT. Case series and case report studies indicated psychiatric and behavioral adverse events of LEV. Cost-effectiveness evaluations indicated LEV as the most cost-effective non-benzodiazepines anti-epileptic drug (AED). Conclusions LEV has a similar efficacy as LOR, PHT, and VPA for SE, but a lower need for ventilator assistance and risk of hypotension, thus can be used as a second-line treatment for SE. However, more well-conducted studies to confirm the role of intravenous LEV for SE are still needed.
Liquid Chromatographic Tandem Mass Spectrometric (LC-MS/MS) Determination of Perfluorooctane Sulfonate (PFOS) and Perfluorooctanoic Acid (PFOA) in the Yolk of Poultry Eggs in Malaysia

Perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA) are widely used in products, and are known for their water and grease repellent properties. The persistence nature and potential toxicity of these substances have raised substantial concerns about health effects. Regarding humans, food consumption has reportedly been a significant source of exposure for both compounds. Hence, this study was performed to develop and validate an analytical method for PFOS and PFOA in egg yolks using liquid chromatographic tandem mass spectrometry (LC-MS/MS) followed by the determination of concentration of both compounds in the yolk of poultry eggs in Malaysia. A total of 47 poultry egg yolk samples were extracted by a simple protein precipitation technique using acetonitrile. The analytical method was developed using LC-MS/MS and validated based on the Food and Drug Administration (FDA)’s Bioanalytical Method Validation guidelines. The results revealed that PFOS was quantitatively detected in six samples, with the concentration range between 0.5 and 1.01 ng g−1. Among these, five samples were from home-produced chicken eggs, and one sample was from a quail egg. The levels of PFOA in all samples were below the quantifiable limit (<0.1 ng g−1). This indicated that the contamination of PFCs in poultry eggs were mostly attributed to the nature of free foraging animals, which had direct contact with the contaminants in soil and feed. In conclusion, a fast and robust analytical method for analyzing PFOS and PFOA in egg yolk samples using LC-MS/MS was successfully developed and validated. The presence of these emerging contaminants in this study signified widespread pollution in the environment.
20th Anniversary Ottawa Decision Support Framework: Part 3 Overview of Systematic Reviews and Updated Framework

Introduction. The Ottawa Decision Support Framework (ODSF) has guided practitioners and patients facing difficult decisions for 20 years. It asserts that decision support interventions that address patients’ decisional needs improve decision quality. Purpose. To update the ODSF based on a synthesis of evidence. Methods. We conducted an overview of systematic reviews, searching 9 electronic databases. Eligible reviews included decisional needs assessments, decision support interventions, and decisional outcome measures guided by the ODSF. We extracted data and synthesized results narratively. Eight ODSF developers/expert users from 4 disciplines revised the ODSF. Results. Of 4656 citations, we identified 4 eligible reviews (>250 studies, >100 different decisions, >50,000 patients, 18 countries, 5 continents). They reported current ODSF decisional needs and their most frequent manifestations in the areas of inadequate knowledge/information, unclear values, decisional conflict/uncertainty, and inadequate support. They uncovered 11 new manifestations of 6 decisional needs. Using the Decisional Conflict Scale (DCS) to assess decisional needs, average scores were elevated at baseline and declined shortly after decision making, even without information interventions. Patient decision aids were superior to usual care in reducing total DCS scores and improving decision quality. We revised the ODSF by refining definitions of 6 decisional needs and adding new interventions to address 4 needs. We added a decision process outcome and eliminated secondary outcomes unlikely to improve across a range of decisions, retaining the implementation/continuance of the chosen option and appropriate use/costs of health services. Conclusions. We updated the ODSF to reflect the current evidence and identified implications for practice and further research.
Construction of an Immunogenomic Risk Score for Prognostication in Colon Cancer

Immune-related genes (IRGs) play regulatory roles in the immune system and are involved in the initiation and progression of colon cancer. This study aimed to develop an immunogenomic risk score for predicting survival outcomes among colon cancer patients. We analyzed the expressions of IRGs in colon specimens and discovered 484 differentially expressed IRGs when we compared specimens from colon cancer and adjacent normal tissue. Univariate Cox regression analyses were performed to identify 26 IRGs that were associated with survival. A Cox proportional hazards model with a lasso penalty identified five optimal IRGs for constructing the immunogenomic risk score (CD1B, XCL1, PLCG2, NGF, and OXTR). The risk score had good performance in predicting overall survival among patients with colon cancer and was correlated with the amount of tumor-infiltrating immune cells. Our findings suggest that the immunogenomic risk score may be useful for prognostication in colon cancer cases. Furthermore, the five IRGs included in the risk score might be useful targets for investigating the initiation of colon cancer and designing personalized treatments.
Cytochemical study of the antagonistic activity of Sporothrix floculosa on rose powdery mildew, Sphaerotheca pannosa var. rosae

By using a wheat germ agglutinin-ovomucoid gold complex as a specific probe for localizing chitin distribution in cells of the rose powdery mildew fungus, Sphaerotheca pannosa var. rosae, and a reported antagonist fungus, Sporothrix flocculosa, we revealed a difference in cell wall composition of the two fungi as judged by the intensity of the labeling and the cytoplasm compactness. The same probe was used for indirectly determining whether or not chitinolytic activity was involved in the antagonistic action of S. flocculosa against S. p. rosae (.)
HORMONAL CONTROL OF MYOMETRIAL FUNCTION DURING PREGNANCY IN THE SHEEP

In a series of thirteen sheep, experiments were carried out during the last month of pregnancy to assess the extent of progesterone influence on the myometrium. Staircase effects were recorded from the longitudinal fibres of the myometrium in the intact ewe and also in vitro, and the threshold dose ofoxytocin required to elicit a contraction was determined. The results, both in vivo and in vitro, demonstrate that the progesterone influence declines before parturition and it is con¬ cluded that the extrusion of the foetus is accomplished by an oestrogendominated myometrium. This finding is discussed in relation to the fact that no fall in the progesterone level in blood can be detected before parturition. The oxytocin thresholds determined in vivo suggest that the sensitivity of the myometrium increases with the approach to parturition.
Local and Systemic Inflammation and Oxidative Stress After a Single Bout of Maximal Walking in Patients With Symptomatic Peripheral Artery Disease

Objective The aim of this study was to assess the effects of a single bout of maximal walking on blood and muscle nitric oxide (NO) bioavailability, oxidative stress, and inflammation in symptomatic peripheral artery disease (PAD) patients. Methods A total of 35 men with symptomatic PAD performed a graded maximal exercise test on a treadmill (3.2 km/h, 2% increase in grade every 2 minutes). Plasma samples and gastrocnemius muscle biopsies were collected preexercise and postexercise for assessment of NO bioavailability (plasma NO and muscle, endothelial NO synthase), oxidative stress and antioxidant function (lipid peroxidation [LPO], catalase [CAT], and superoxide dismutase), and inflammation (interleukin-6, C-reactive protein, tumor necrosis factor-α, intercellular adhesion molecules, and vascular adhesion molecules). The effects of the walking exercise were assessed using paired t tests or Wilcoxon tests. Results After maximal walking, plasma NO and LPO were unchanged (P > .05), plasma CAT decreased, and all blood inflammatory markers increased (all P ≤ .05). In the disease-affected skeletal muscle, endothelial NO synthase, CAT, LPO, and all inflammatory markers increased, whereas superoxide dismutase decreased (all P ≤ .05). Conclusion In patients with symptomatic PAD, maximal exercise induces local and systemic impairments, which may play a key role in atherogenesis. Exercise strategies that avoid maximal effort may be important to reduce local and systemic damage and enhance clinical benefits.
The influence of trunk mechanics on the assessment of elbow position in college aged pitchers

ABSTRACT Researchers have postulated that the rise in the incidence of pitching injuries is partially due to poor pitching mechanics. A topic that is often debated revolves around the correct positioning of the elbow in relationship to the body. Therefore, this study attempts to understand the associations of vertical or horizontal elbow positon with upper extremity joint moments, and ball velocity, and how elbow position is influenced by trunk position. Motion analysis data from 99 collegiate pitchers were analysed for this study. A random intercept, mixed-effects regression model was used to determine if statistically significant associations existed between elbow position and upper extremity joint moments and ball velocity. Results indicated that visual impressions of the elbow position were highly correlated with trunk position, whereas kinematic definitions of elbow position were correlated to the glenohumeral angle. Visual vertical and horizontal elbow position was associated with increased elbow varus moments (p = 0.001) and ball velocity (p = 0.019), respectively. Whereas kinematic elbow position was not associated with either upper extremity joint moments or ball velocity. Therefore, what coaches visually interpret as an improperly positioned elbow may actually be a combination of lateral lean, anterior tilt, and over rotation of the trunk.
Population structure and breeding biology of the hairy crab Pilumnus vespertilio (Fabricius, 1793) (Crustacea: Brachyura: Pilumnidae) in southern Mozambique

The population structure and reproduction of Pilumnus vespertilio were studied for the first time in Mozambique. Random samples of crabs were taken monthly from January to December 2002 from a pebble area of Inhaca Island, southern Mozambique. A clear sexual dimorphism was observed in the present population with males reaching greater sizes than females. Sex ratio was female‐biased, and the monthly size–frequency distributions were often bimodal. The annual reproductive cycle of Pilumnus vespertilio was continuous with peaks of breeding in summer. Results suggest that embryonic development may be synchronized within the population as a result of the very high reproductive activity observed in summer. Juveniles are recruited mostly in winter in the study area.
The sperm head of the plains mouse, Pseudomys australis: Ultrastructure and effects of chemical treatments

The ultrastructure of the sperm head of the plains mouse, Pseudomys australis, and the effects of chemical treatments on the sperm head components has been investigated to determine the nature of the material in the hooks on the apical margine of the sperm head. Ultrastructural studies indicated that the dorsal hook contained nuclear, subacrosomal, and acrosomal material, whereas the two ventral hooks were largely composed of an extention of the subacrosomal material with two thin acrosomal projections at their base. Acrosomal material was dispersed by mild detergent treatment, where as the bulk of the material in the ventral hooks were generally found to be similar to the subacrosomal material in the dorsal hook in their resistance to the various chemical treatments. Treatment of sperm with NaOH or guanidine-hydrochloride and DTT revealed two layers of material in the ventral hooks.