Miracle-dz/UniFAR-FTUs huggingface dataset:
Association Between Circulating Regulator of Calcineurin 2 Concentrations With Overweight and Obesity

Background Regulator of calcineurin 2 (RCAN2) has been reported to promote food intake and weight gain in animal studies. However, its effect on body weight in humans is unclear. Objective This study aimed to investigate the relationship between serum RCAN2 concentrations and participants with overweight/obesity. Methods A cross-sectional study was performed in 872 Chinese adults, including 348 participants with normal weight (NW), 397 participants with overweight (OW), and 127 participants with obesity (OB). All participants were divided into NW, OW and OB groups according to their body mass index (BMI). Serum RCAN2 concentrations were determined by enzyme-linked immunosorbent assay. Results Serum RCAN2 concentrations gradually increased with the increase of BMI (p < 0.001). The percentages of OW/OB gradually increased in tandem with increasing tertiles of RCAN2 (p < 0.001). Additionally, serum RCAN2 concentrations were significantly correlated with a series of anthropometric and metabolic parameters, predominantly including body weight, BMI, SBP, DBP, total cholesterol, triglycerides, HDL-C, LDL-C (all p < 0.05). Furthermore, logistic regression analysis showed that the risk of OW/OB was significantly increased with the increase of serum RCAN2 concentrations. Receiver operation characteristic (ROC) curve analysis revealed that serum RCAN2, especially serum RCAN2/(AST/ALT) ratio, might serve as a candidate biomarker for obesity. Conclusion Serum RCAN2 concentrations were increased in subjects with OW/OB. The increased serum RCAN2 concentrations were associated with the increased risks of OW/OB.
Spatial Distribution and Hierarchical Clustering of β-Amyloid and Glucose Metabolism in Alzheimer’s Disease

Increased amyloid burden and decreased glucose metabolism are important characteristics of Alzheimer’s disease (AD), but their spatial distribution and hierarchical clustering organization are still poorly understood. In this study, we explored the distribution and clustering organization of amyloid and glucose metabolism based on 18F-florbetapir and 18F-fluorodeoxyglucose PET data from 68 AD patients and 20 cognitively normal individuals. We found that: (i) cortical regions with highest florbetapir binding were the regions with high glucose metabolism; (ii) the percentage changes of amyloid deposition were greatest in the frontal and temporal areas, and the hypometabolism was greatest in the parietal and temporal areas; (iii) brain areas can be divided into three hierarchical clusters by amyloid and into five clusters by metabolism using a hierarchical clustering approach, indicating that adjacent regions are more likely to be grouped into one sub-network; and (iv) there was a significant positive correlation in any pair of amyloid-amyloid and metabolism-metabolism sub-networks, and a significant negative correlation in amyloid-metabolism sub-networks. This may suggest that the influence forms and brain regions of AD on different pathological markers may not be synchronous, but they are closely related.
The Clinical Characteristics and Prognosis of AYA and Older Adult ETP-ALL/LBL: A Real-World Multicenter Study in China

Early T-cell precursor (ETP) lymphoblastic leukemia/lymphoma is a high-risk T lymphoblastic leukemia/lymphoma (T-ALL/LBL) subgroup. We performed a real-world multicenter study to explore the clinical characteristics and prognosis of adolescent and young adults (AYA) and older adult ETP leukemia/lymphoma. A total of 103 patients with ETP-ALL/LBL in five centers in China between January 2016 and February 2021 were included in this study. The median age was 29 years (range, 15–70 years). Next-generation sequencing was performed in 94 patients and revealed that NOTCH1 (35.1%, 33 cases) was the most frequently mutated gene, followed by JAK3 (16.0%, 15 cases), PHF6 (13.80%, 13 cases) and EZH2 (11.70%, 11 cases). Complete remission (CR) was obtained in 74.2% (72/97) of patients, and 6 relapsed/refractory patients received a decitabine combined with AAG priming regimen as reinduction therapy with a CR rate of 50%. With a median follow-up of 18 months (0.5–60 months), the 2-year overall survival (OS) and relapse-free survival (RFS) rates for the entire cohort were 54% and 57.7%, respectively. Allogeneic stem cell transplantation (allo-SCT) was performed in 59.8% (58/97) of patients. After landmark analysis at 6 months, the 2-year OS rates was 77% of patients with allo-SCT at CR1 and 25% of patients with chemotherapy alone (p < 0.001). A multivariate analysis suggested that allo-SCT and CR after the first course induction were independent prognostic factors for OS. Collectively, we reported the largest cohort study with AYA and older adult ETP-ALL/LBL, and we found that ETP-ALL/LBL was highly invasive and had a poor long-term prognosis. Allo-SCT could significantly improve ETP-ALL/LBL patient survival.
Severe Acute Respiratory Syndrome Coronavirus 2 Antibody Response After Heterologous Immunizations With ChAdOx1/BNT162b2 in End-Stage Renal Disease Patients on Hemodialysis

The Korean government decided to schedule heterologous vaccinations on dialysis patients for early achievement of immunization against Coronavirus disease 2019(COVID-19). However, the effects of heterologous immunizations in hemodialysis (HD) patients are unclear. One hundred (HD) patients from Gangdong Kyung Hee University Hospital and Kyung Hee Medical Center and 100 hospital workers from Gangdong Kyung Hee University Hospital were enrolled in this study. The HD patients received the mixing schedule of ChAdOx1/BNT162b2 vaccinations at 10-week intervals, while hospital workers received two doses of ChAdOx1 vaccines at 12-week intervals. Serum IgG to a receptor-binding domain (RBD) of the S1 subunit of the spike protein of SARS-CoV-2 was measured 1 month after the first dose, 2 months and 4 months after the second dose. The median [interquartile range] anti-RBD IgG was 82.1[34.5, 176.6] AU/ml in HD patients and 197.1[124.0, 346.0] AU/ml in hospital workers (P < 0.001) after the first dose. The percentage of positive responses (IgG > 50 AU/ml) was 65.0% and 96.0% among the both group, respectively (P < 0.001). The anti-RBD IgG levels increased significantly by 2528.8 [1327.6, 5795.1] AU/ml with a 100.0% positive response rate in HD patients 2 months after the second dose, which was higher than those in hospital workers 981.4[581.5, 1891.4] AU/ml (P < 0.001). Moreover, anti-RBD IgG remains constantly high, and positive response remains 100% in HD patients 4 months after the second dose. This study suggests that heterologous vaccinations with ChAdOx1/BNT162b2 can be an alternative solution on HD patients for early and strong induction of humoral response.
The Effectiveness of Unilateral Cochlear Implantation on Performance-Based and Patient-Reported Outcome Measures in Finnish Recipients

Understanding speech is essential for adequate social interaction, and its functioning affects health, wellbeing, and quality of life (QoL). Untreated hearing loss (HL) is associated with reduced social activity, depression and cognitive decline. Severe and profound HL is routinely rehabilitated with cochlear implantation. The success of treatment is mostly assessed by performance-based outcome measures such as speech perception. The ultimate goal of cochlear implantation, however, is to improve the patient’s QoL. Therefore, patient-reported outcomes measures (PROMs) would be clinically valuable as they assess subjective benefits and overall effectiveness of treatment. The aim of this study was to assess the patient-reported benefits of unilateral cochlear implantation in an unselected Finnish patient cohort of patients with bilateral HL. The study design was a prospective evaluation of 118 patients. The patient cohort was longitudinally followed up with repeated within-subject measurements preoperatively and at 6 and 12 months postoperatively. The main outcome measures were one performance-based speech-in-noise (SiN) test (Finnish Matrix Sentence Test), and two PROMs [Finnish versions of the Speech, Spatial, Qualities of Hearing questionnaire (SSQ) and the Nijmegen Cochlear Implant Questionnaire (NCIQ)]. The results showed significant average improvements in SiN scores, from +0.8 dB signal-to-noise ratio (SNR) preoperatively to −3.7 and −3.8 dB SNR at 6 and12 month follow-up, respectively. Significant improvements were also found for SSQ and NCIQ scores in all subdomains from the preoperative state to 6 and 12 months after first fitting. No clinically significant improvements were observed in any of the outcome measures between 6 and 12 months. Preoperatively, poor SiN scores were associated with low scoring in several subdomains of the SSQ and NCIQ. Poor preoperative SiN scores and low PROMs scoring were significantly associated with larger postoperative improvements. No significant association was found between SiN scores and PROMs postoperatively. This study demonstrates significant benefits of cochlear implantation in the performance-based and patient-reported outcomes in an unselected patient sample. The lack of association between performance and PROMs scores postoperatively suggests that both capture unique aspects of benefit, highlighting the need to clinically implement PROMs in addition to performance-based measures for a more holistic assessment of treatment benefit.
Gravitational observables, intrinsic coordinates, and canonical maps

It is well known that in a generally covariant gravitational theory the choice of spacetime scalars as coordinates yields phase-space observables (or "invariants"). However their relation to the symmetry group of diffeomorphism transformations has remained obscure. In a symmetry-inspired approach we construct invariants out of canonically induced active gauge transformations. These invariants may be intepreted as the full set of dynamical variables evaluated in the intrinsic coordinate system. The functional invariants can explicitly be written as a Taylor expansion in the coordinates of any observer, and the coefficients have a physical and geometrical interpretation. Surprisingly, all invariants can be obtained as limits of a family of canonical transformations. This permits a short (again geometric) proof that all invariants, including the lapse and shift, satisfy Poisson brackets that are equal to the invariants of their corresponding Dirac brackets.
The native cell differentiation program aberrantly recapitulated in yki3S/A-induced intestinal hyperplasia drives invasiveness and cachexia-like wasting phenotypes

Many tumors recapitulate the developmental and differentiation program of their tissue of origin, a basis for tumor cell heterogeneity. Although stem-cell-like tumor cells are well-studied, the roles of tumor cells undergoing differentiation in inducing the phenotypes associated with advanced cancers remains to be elucidated. Here, we employ Drosophila genetics to demonstrate that the native differentiation program of intestinal stem cells plays a key role in determining an intestinal tumor’s capacity to invade and induce various non-tumor-autonomous phenotypes. The differentiation program that generates absorptive cells enterocytes is aberrantly recapitulated in the intestinal tumors generated through activation of the Yap1 ortholog Yorkie. Elimination of tumor cells in the enterocyte lineage allows stem cell-like tumor cells to grow but suppresses invasiveness and reshapes various phenotypes associated with cachexia-like wasting by altering the expression of tumor-derived factors. Our study provides insight into how a native differentiation program determines a tumor’s capacity to induce the phenotypes associated with advanced cancers and suggests that manipulating the differentiation programs co-opted in tumors might be a way to treat some complications of cancer, including cachexia.
Global Schauder estimates for a class of degenerate Kolmogorov equations

We consider a class of possibly degenerate second order elliptic operators $\cal A$ on $\R^n$. This class includes hypoelliptic Ornstein-Uhlenbeck type operators having an additional first order term with unbounded coefficients. We establish global Schauder estimates in H\"older spaces both for elliptic equations and for parabolic Cauchy problems involving ${\cal A}$. The H\"older function spaces are defined with respect to a non-euclidean metric related to the operator $\cal A$.
Inter population variation in behaviour of native prey (Daphnia) mediates the impact of the invasive spiny water flea (Bythotrephes cederströmii) on plankton communities

Predation plays an important role in structuring and maintaining ecological communities. Population level differences in predator trait expression have been shown to influence predator impacts on prey species, altering ecological interactions and trophic dynamics. However, the effect of inter-population differences in prey traits on the impacts of predation on ecological communities remains poorly understood, especially for introduced predators where differences in prey traits could influence the outcome of biological invasions. We examined if population level differences in Daphnia vertical position influenced the impacts of the invasive predator Bythotrephes cederströmii on major zooplankton and algal groups. Our results show that differences in Daphnia vertical position resulted in differences in Bythotrephes impacts on small cladocerans, with a larger reduction small cladoceran density in mesocosms where Daphnia adopted a deeper vertical position. Furthermore, we observed a greater increase in algal biomass in invaded mesocosms with a greater proportion of hypolimnetic Daphnia. Taken together, these results suggest that population level differences in Daphnia vertical position influence the magnitude and type of Bythotrephes impacts on zooplankton communities.
The horopter: Old and new

The horopter's history may partly be responsible for its ambiguous psychophysical definitions and obscured physiological significance. However, the horopter is a useful clinical tool integrating physiological optics and binocular vision. This article aims to help understand how it could come to such different attitudes toward the horopter. After the basic concepts underlying binocular space perception and stereopsis are presented, the horopter's old ideas that influence today's research show their inconsistencies with the conceptualized binocular vision. Two recent geometric theories of the horopter with progressively higher eye model fidelity that resolve the inconsistencies are reviewed. The first theory corrects the 200-year-old Vieth-Müller circle still used as a geometric horopter. The second theory advances Ogle's classical work by modeling empirical horopters as conic sections in the binocular system with the asymmetric eye model that accounts for the observed misalignment of optical components in human eyes. Its extension to iso-disparity conics is discussed.
Within-individual changes reveal increasing social selectivity with age in rhesus macaques

Accumulating evidence in humans and other mammals suggests older individuals tend to have smaller social networks. Uncovering the cause of these declines is important as it can inform how changes in social relationships with age might affect health and fitness in later life. Smaller social networks might be detrimental, but may also be the result of greater selectivity in partner choice, reflecting an adaptive solution to physical or physiological limitations imposed by age. While greater selectivity with age has been shown in humans, the extent to which active ‘social selectivity’ within an individual’s lifetime occurs across the animal kingdom remains an open question. Using 8 years of longitudinal data from a population of free-ranging rhesus macaques we provide the first evidence in a non-human animal for within-individual increases in social selectivity with age. Going beyond previous cross-sectional studies, our within-individual analyses revealed that adult female macaques actively reduced the size of their networks as they aged and focused on partners previously linked to fitness benefits, including kin and partners to whom they were strongly and consistently connected earlier in life. Females spent similar amounts of time socializing as they aged, suggesting that network shrinkage does not result from lack of motivation or ability to engage. Furthermore, females remained attractive companions and were not isolated by withdrawal of social partners. Taken together, our results provide rare empirical evidence for social selectivity in non-humans, suggesting patterns of social aging in humans may be deeply rooted in primate evolution and may have adaptive value. Significance statement The narrowing of social networks and prioritization of meaningful relationships with age is commonly observed in humans. Determining whether social selectivity is exhibited by other animals remains critical to furthering our understanding of the evolution of late-life changes in sociality. Here we test key predictions from the social selectivity hypothesis and demonstrate that female rhesus macaques show within-individual changes in sociality with age that resemble the human social aging phenotype. Our use of longitudinal data to track how individuals change their social behavior within their lifetimes offers the most conclusive evidence to date that social selectivity is not a phenomenon unique to humans and therefore might have deeper evolutionary underpinnings.
Genetic structure and differentiation of the endemic Bolle’s Laurel Pigeon (Columba bollii) in the Canary Islands

Island archipelagos are global biodiversity hotspots since they often foster high concentrations of diverse lineages and endemic species. Here, we examine the population genetics of the endemic Bolle’s Laurel Pigeon Columba bollii, a frugivorous bird inhabiting subtropical laurel forests. We genotyped ten microsatellite loci using DNA obtained from moulted tail feathers collected at eight sampling sites on the four western islands of the Canarian archipelago. Analyses including F-statistics, Bayesian clustering approaches, isolation by distance tests and population graph topologies, were used to infer the genetic diversity and the population differentiation within and among insular populations. Additionally, we evaluated the effect of null alleles on data analysis. Low genetic diversity was found in all populations of Bolle’s Laurel Pigeon, with no significant differences in diversity among them. However, significant genetic differentiation was detected among all populations, with pigeons from La Palma and El Hierro exhibiting the closest affinity. Bayesian clustering supported population separation between islands, and also detected fine-scale structure within the Tenerife and La Gomera populations. Present-day pigeon movements appear to occur between islands, however, this has not been sufficient to remove the signature of genetic divergence among the populations of Bolle’s Laurel Pigeon, which was moderately linked to geographical distance. According to metapopulation structure, this study suggests that the evolutionary history of C. bollii is closely related to the geological past of these oceanic islands and the distribution range of its habitat, the laurel forest. Finally, conservation implications for the species are discussed.
Experimental Test of the Contributions of Initial Variation and New Mutations to Adaptive Evolution in a Novel Environment

Experimental evolution is an approach that allows researchers to study organisms as they evolve in controlled environments. Despite the growing popularity of this approach, there are conceptual gaps among projects that use different experimental designs. One such gap concerns the contributions to adaptation of genetic variation present at the start of an experiment and that of new mutations that arise during an experiment. The primary source of genetic variation has historically depended largely on the study organisms. In the long-term evolution experiment (LTEE) using Escherichia coli, for example, each population started from a single haploid cell, and therefore adaptation depended entirely on new mutations. Most other microbial evolution experiments have followed the same strategy. By contrast, evolution experiments using multicellular, sexually-reproducing organisms typically start with pre-existing variation that fuels the response to selection. New mutations may also come into play in later generations of these experiments, but it is generally difficult to quantify their contribution in these studies. Here, we performed an experiment using E. coli to compare the contributions of initial genetic variation and new mutations to adaptation in a new environment. Our experiment had four treatments that varied in their starting diversity, with 18 populations in each treatment. One treatment depended entirely on new mutations, while the other three began with mixtures of clones, whole-population samples, or mixtures of whole-population samples from the LTEE. By tracking genetic markers associated with particular founders in two of our treatments, we could document the impact of the initial variation during the early generations of our experiment. However, there were no differences in fitness among the treatments after 500 or 2000 generations in the new environment, despite the variation in fitness among the founders. These results indicate that new mutations quickly overcame, and eventually contributed more to adaptation, than did the initial variation. Our study thus shows that pre-existing genetic variation can have a strong impact on early evolution in a new environment, but new beneficial mutations may contribute more to later evolution and can even drive some initially beneficial variants to extinction.
In-text citation error rate as a scientometric tool for evaluating accuracy and weighing evidence

Scientists are fallable and biased, but accuracy can be assessed through empirical analysis of published work that quantifies in-text citation (or quotation) errors. In scientific conflicts, it can be difficult for outsiders to know whose evidence or interpretation to trust. In-text citation error rate can assist decision- and policy-making bodies, as well as the courts when conflicts reach the judicial branch of government, by quantifying absolute and relative accuracy of scientists presenting scientific evidence. I propose the use of in-text citation error rates as a scientometric tool to quantify the accuracy of an author’s work. In-text citation error rates in excess of an established overall mean (e.g., 11% for minor errors and 7% for major errors in ecology), or differences in in-text citation error rates between opposing groups of scientists could be used to reveal excessive inaccuracies in an author or group. The spotted owl (Strix occidentalis) has been at the center of a multi-decadal conflict caused by competition among people over forest resources, with scientific experts representing opposing stakeholders often presenting conflicting evidence. I applied the in-text citation error rate tool to important papers in the spotted owl and forest fire debate and found evidence of greater error rates in works on one side of this debate. In-text citation error rate can be an effective tool for quantifying accuracy among scientists.