Miracle-dz/UniFAR-FTUs huggingface dataset:
The role of explicit memory in syntactic persistence: Effects of lexical cueing and load on sentence memory and sentence production

Speakers’ memory of sentence structure can persist and modulate the syntactic choices of subsequent utterances (i.e., structural priming). Much research on structural priming posited a multifactorial account by which an implicit learning process and a process related to explicit memory jointly contribute to the priming effect. Here, we tested two predictions from that account: (1) that lexical repetition facilitates the retrieval of sentence structures from memory; (2) that priming is partly driven by a short-term explicit memory mechanism with limited resources. In two pairs of structural priming and sentence structure memory experiments, we examined the effects of structural priming and its modulation by lexical repetition as a function of cognitive load in native Dutch speakers. Cognitive load was manipulated by interspersing the prime and target trials with easy or difficult mathematical problems. Lexical repetition boosted both structural priming (Experiments 1a–2a) and memory for sentence structure (Experiments 1b–2b) and did so with a comparable magnitude. In Experiment 1, there were no load effects, but in Experiment 2, with a stronger manipulation of load, both the priming and memory effects were reduced with a larger cognitive load. The findings support an explicit memory mechanism in structural priming that is cue-dependent and attention-demanding, consistent with a multifactorial account of structural priming.
Physical fitness and quality of life in adolescents with asthma and fixed airflow obstruction

Asthma is a disease characterized by reversible bronchoconstriction, but some subjects develop fixed airflow obstruction (FAO). Subjects with FAO present more asthma symptoms and may have increased sedentary behavior; however, the effect of FAO on aerobic fitness and physical activity levels (PAL) remains poorly understood.
A non‐helical region in transmembrane helix 6 of hydrophobic amino acid transporter MhsT mediates substrate recognition

MhsT of Bacillus halodurans is a transporter of hydrophobic amino acids and a homologue of the eukaryotic SLC6 family of Na+‐dependent symporters for amino acids, neurotransmitters, osmolytes, or creatine. The broad range of transported amino acids by MhsT prompted the investigation of the substrate recognition mechanism. Here, we report six new substrate‐bound structures of MhsT, which, in conjunction with functional studies, reveal how the flexibility of a Gly‐Met‐Gly (GMG) motif in the unwound region of transmembrane segment 6 (TM6) is central for the recognition of substrates of different size by tailoring the binding site shape and volume. MhsT mutants, harboring substitutions within the unwound GMG loop and substrate binding pocket that mimick the binding sites of eukaryotic SLC6A18/B0AT3 and SLC6A19/B0AT1 transporters of neutral amino acids, exhibited impaired transport of aromatic amino acids that require a large binding site volume. Conservation of a general (G/A/C)ΦG motif among eukaryotic members of SLC6 family suggests a role for this loop in a common mechanism for substrate recognition and translocation by SLC6 transporters of broad substrate specificity.
Predictive ability of symptomatology in COVID-19 during Active case search in Lagos State, Nigeria

Background: In April 2020, a community-based active case search surveillance system of coronavirus disease 2019 (COVID-19) was developed by the emergency outbreak committee in Lagos State. This followed the evidence of community transmission of coronavirus disease in the twenty Local Government Areas in Lagos State. This study assessed the value of respiratory and other symptoms in predicting positive SARS-CoV-2 using reverse transcription-polymerase chain reaction (RT-PCR). It is hoped that if symptoms are predictive, they can be used in screening before testing. Methods: Communities were included based on the alerts from community members through the rumour alert system set up by the state. All members of the households of the communities from where the alert came were eligible. Household members who declined to participate were excluded from the study. A standardised interviewer-administered electronic investigation form was used to collect sociodemographic information, clinical details and history for each possible case. Data was analysed to see the extent of agreement or correlation between reported symptoms and the results of PCR testing for SARS-COV-2. Results: A total of 12,739 persons were interviewed. The most common symptoms were fever, general weakness, cough and difficulty in breathing. Different symptoms recorded different levels of sensitivity as follows: fever, 28.9%; cough, 21.7%; general body weakness, 10.9%; and sore throat, 10.9%. Sensitivity and specificity for fever, the most common symptom, were 28.3% and 50.2%, respectively, while similar parameters for general body weakness, the next most common symptom, were 10.9% and 73.2%, respectively. Conclusion: From these findings, the predictive ability of symptoms for COVID-19 diagnosis was extremely weak. It is unlikely that symptoms alone will suffice to predict COVID-19 in a patient. An additional measure, such as confirmatory test by RT-PCR testing, is necessary to confirm the disease.
Microthin Descemet Stripping Automated Endothelial Keratoplasty Versus Descemet Membrane Endothelial Keratoplasty: A Randomized Clinical Trial

Purpose: To compare visual outcomes, complications, and vision-related quality of life (QoL) after microthin Descemet stripping automated endothelial keratoplasty (MT-DSAEK) versus Descemet membrane endothelial keratoplasty (DMEK) for the management of corneal endothelial dysfunction in Fuchs dystrophy. Methods: This is a prospective, double-blinded randomized controlled clinical trial. Patients with visually significant endothelial decompensation from Fuchs dystrophy were prospectively randomized to receive MT-DSAEK or DMEK surgery. The primary outcome was best spectacle-corrected visual acuity (BSCVA) at 12 months. Secondary outcomes included refraction, keratometry, endothelial cell count, complications, and vision-related QoL at 6 and 12 months postoperatively. Results: A total of 56 eyes of 56 patients were enrolled, 28 in each group. Postoperatively, LogMAR mean BSCVA in the MT-DSAEK group was 0.17 ± 0.08 and 0.11 ± 0.09 at 6 and 12 months compared with 0.09 ± 0.13 and 0.04 ± 0.13 after DMEK (P = 0.03, P = 0.002 respectively) with the DMEK cohort achieving 3.5 logarithm of the minimum angle of resolution letters better BSCVA at 1 year compared with MT-DSAEK. Complication rates were similar with 3.5% rebubbling rate in both groups, 1 primary graft failure in DMEK and a single endothelial rejection in the MT-DSAEK arm. Vision-related QoL was comparable at 6 and 12 months postoperatively, and no eyes demonstrated loss of vision from preoperative BSCVA. Conclusions: DMEK surgery resulted in significantly better BSCVA at 1, 3, 6, and 12 months postoperatively compared with MT-DSAEK. Patient satisfaction was similar with no differences reported in vision-related QoL scores, as was the complications profile between groups. Thus, our results favor DMEK as the better choice procedure for eyes with Fuchs-related corneal decompensation without ocular comorbidities.
Singing and Accompaniment Support the Processing of Song Lyrics and Change the Lyrics' Meaning

A growing body of evidence indicates that music can support the processing of language. Some of its beneficial effects may even occur after one exposure. Accompaniment can also have an impact: in a-cappella singing, silences and out-of-key notes may confuse listeners, while accompaniment avoids silences and elucidates both rhythm and harmony, thereby supporting music-processing and concentration. These hypotheses were tested in two experiments. In a classroom setting, 271 pupils (M = 15.7 years old, SD = 0.9), listened to five out of 24 tracks (four songs in six different conditions) and completed a questionnaire after each one. As expected, the instrumental interludes between sung or spoken phrases in accompanied versions were rated less distracting than the silences that replace them in unaccompanied ones. Furthermore, perceived arousal, emotion, valence, and purity of singing were rated more positively in accompanied versions. Singing, on the other hand, supports the perceived intelligibility and comprehensibility of the lyrics. Finally, the music makes repetitions of words and phrases more meaningful and changes the lyrics’ emotional meaning, wereby some aspects of sadness are associated with negative affect while other aspects of sadness are associated with positive affect. These results were by and large replicated in a better randomized laboratory experiment among 24 adults (M = 24.4; SD = 4.8). Submitted 2018 November 26; accepted 2020 August 6. Published 2020 October 22; https://doi.org/10.18061/emr.v15i1-2.6863
Does sleep help or harm managers' perceived productivity? Trade-offs between affect and time as resources.

Managers often do not get the recommended amount of sleep needed for proper functioning. Based on conservation of resources theory, we suggest that this is a result of sleep having both resource gains (improved affect) and losses (less time) that compete to determine managers' perceived productivity the next day. This trade-off may, in turn, determine the amount of investment in sleep the next night. In a diary study with hotel managers, we found support for sleep as resource loss. After nights with more sleep than usual, managers reported lower perceived productivity due to fewer hours spent at work. In fact, for every hour spent sleeping, managers reported working 31 min, 12 s less. Further, when perceived productivity is reduced managers withdraw and conserve their resources by getting more sleep the next night (12 min, 36 s longer for each scale point decrease in perceived productivity), consistent with loss spirals from conservation of resources theory. Exploratory analyses revealed that sleep has a curvilinear effect on affect, such that too little or too much sleep is not beneficial. Overall, our study demonstrates the often-ignored trade-offs of sleep in terms of affect and work time, which has downstream implications for managers' perceived productivity. (PsycInfo Database Record (c) 2020 APA, all rights reserved).
Impact of Gene–Environment Interactions on Cancer Development

Several epidemiological and experimental studies have demonstrated that many human diseases are not only caused by specific genetic and environmental factors but also by gene–environment interactions. Although it has been widely reported that genetic polymorphisms play a critical role in human susceptibility to cancer and other chronic disease conditions, many single nucleotide polymorphisms (SNPs) are caused by somatic mutations resulting from human exposure to environmental stressors. Scientific evidence suggests that the etiology of many chronic illnesses is caused by the joint effect between genetics and the environment. Research has also pointed out that the interactions of environmental factors with specific allelic variants highly modulate the susceptibility to diseases. Hence, many scientific discoveries on gene–environment interactions have elucidated the impact of their combined effect on the incidence and/or prevalence rate of human diseases. In this review, we provide an overview of the nature of gene–environment interactions, and discuss their role in human cancers, with special emphases on lung, colorectal, bladder, breast, ovarian, and prostate cancers.
The Impact of Nonminimum-Phase Zeros on Human-in-the-Loop Control Systems

We present results from an experiment in which 33 human subjects interact with a dynamic system 40 times over a one-week period. The subjects are divided into three groups. For each interaction, a subject performs a command-following task, where the reference command is the same for all trials and all subjects. However, each group interacts with a different dynamic system, which is represented by a transfer function. The transfer functions have the same poles but different zeros. One has a minimum-phase zero <inline-formula> <tex-math notation="LaTeX">$z_{\textrm {m}} < 0$ </tex-math></inline-formula>, another has a nonminimum-phase zero <inline-formula> <tex-math notation="LaTeX">$z_{\textrm {n}} = - z_{\textrm {m}} > 0$ </tex-math></inline-formula>, and the last has a slower (i.e., closer to the imaginary axis) nonminimum-phase zero <inline-formula> <tex-math notation="LaTeX">$z_{\textrm {sn}} \in (0,z_{\textrm {n}})$ </tex-math></inline-formula>. The experimental results show that nonminimum-phase zeros tend to make dynamic systems more difficult for humans to learn to control. We use a subsystem identification algorithm to identify the control strategy that each subject uses on each trial. The identification results show that the identified feedforward controllers approximate the inverse dynamics of the system with which the subjects interact better on the last trial than on the first trial. However, the subjects interacting with the minimum-phase system are able to approximate the inverse dynamics in feedforward more accurately than the subjects interacting with the nonminimum-phase system. This observation suggests that nonminimum-phase zeros are an impediment to approximating inverse dynamics in feedforward. Finally, we provide evidence that humans rely on feedforward-step-like-control strategies with systems (e.g., nonminimum-phase systems) for which it is difficult to approximate the inverse dynamics in feedforward.
Gut microbiota influence B cell function in a TLR5-dependent manner

Toll-like receptor (TLR) 5-deficient mice display aberrantly low levels of flagellin-specific antibodies (Flic-IgA) secreted into the gut, combined with excess bacterial flagellin in the gut, and together these attributes define microbiome dysbiosis (T5-dysbiosis). How TLR5 signaling deficiency results in T5-dysbiosis is unclear. Here, we address the role of B cells in T-dysbiosis. We observed that B cells do not express TLR5, and that B cell transplantation from TLR5-/- mouse donors into B-cell deficient mice resulted in a slight reduction in Flic-IgA levels compared to B-cells from WT donors. Bone marrow transplants from WT and TLR5-/- donors into recipients of both genotypes confirmed that TLR5 signaling by non-hematopoietic cells is required for T5-dysbiosis. We observed TLR5 deficiency was associated with an expanded population of IgA+ B cells. TLR5-/- mice tended to have higher richness for the IgA gene hypervariable region (CDR3 gene) variants. Transplantation of microbiomes from TLR5-/- and WT microbiomes donors into germfree mice resulted in a higher proportion of IgA-secreting B cells, and higher overall fecal IgA and anti-Flic IgA for TLR5-/- microbiome recipients. This observation indicated that the TLR5-/- mouse microbiome elicits an anti-flagellin antibody response that requires TLR5 signaling. Together these results indicate that TLR5 signaling on epithelial cells influences B cell populations and antibody repertoire.
The association between subjective impact and the willingness to adopt healthy dietary habits after experiencing the outbreak of the 2019 novel coronavirus disease (COVID-19): a cross-sectional study in China

To investigate the associations between subjective perception of impacts and willingness to change dietary habits in China after experiencing the outbreak of the 2019 novel coronavirus disease (COVID-19), an online questionnaire survey was carried out and 22,459 respondents in mainland China participated in the study, with an average age of 27.9±7.8 years old. Of them, 84.5% self-reported epidemic concern (middle or above), and 60.2%, 66.3% and 66.8% self-reported impact (middle or above) on psychology, life, work respectively. 31.9%, 46.0% and 41.0% of respondents reported their willingness to reduce their dietary intakes of salt, fried foods, and sugary foods, respectively. The stratified analysis of multinomial logistic regression models showed that, respondents with higher psychological impact were more likely to increase their dietary intake of salt, fried foods, sugary foods. Except as aforesaid, most respondents with higher epidemic concerns and higher impacts on psychology, life, work were more likely to reduce eating salt, fried foods, sugary foods. After the epidemic, early stage of positive improvement to a proper diet was observed, whereas the opposite tendency was also found in some respondents with higher impact on psychology. Thus, there is an urgent need for health care and lifestyle intervention policies for different subgroups.
Hox13 genes are required for mesoderm formation and axis elongation during early zebrafish development

ABSTRACT The early vertebrate embryo extends from anterior to posterior due to the addition of neural and mesodermal cells from a neuromesodermal progenitor (NMp) population located at the most posterior end of the embryo. In order to produce mesoderm throughout this time, the NMps produce their own niche, which is high in Wnt and low in retinoic acid. Using a loss-of-function approach, we demonstrate here that the two most abundant Hox13 genes in zebrafish have a novel role in providing robustness to the NMp niche by working in concert with the niche-establishing factor Brachyury to allow mesoderm formation. Mutants lacking both hoxa13b and hoxd13a in combination with reduced Brachyury activity have synergistic posterior body defects, in the strongest case producing embryos with severe mesodermal defects that phenocopy brachyury null mutants. Our results provide a new way of understanding the essential role of the Hox13 genes in early vertebrate development. This article has an associated ‘The people behind the papers’ interview. Highlighted Article: The Hox13 genes are shown to have a novel crucial role in ensuring development of the posterior body in zebrafish through sustaining the tailbud-derived bipotential neuromesodermal progenitors.
Defining Metaniches in the Oral Cavity According to Their Microbial Composition and Cytokine Profile

The human oral microbiota consists of over 700 widespread taxa colonizing the oral cavity in several anatomically diverse oral niches. Lately, sequencing of the 16S rRNA genes has become an acknowledged, culture-independent method to characterize the oral microbiota. However, only a small amount of data are available concerning microbial differences between oral niches in periodontal health and disease. In the context of periodontitis, the cytokine expression in the gingival crevicular fluid has been studied in detail, whereas little is known about the cytokine profile in hard and soft tissue biofilms. In order to characterize oral niches in periodontal health, the oral microbiota and cytokine pattern were analyzed at seven different sites (plaque (P), gingival crevicular fluid (GCF), saliva (S), tongue (T), hard palate (HP), cheek (C) and sublingual area (U)) of 20 young adults using next-generation sequencing and multiplex immunoassays. Site-specific microbial compositions were detected, which clustered into three distinct metaniches (“P-GCF”, “S-T-HP” and “C-U”) and were associated with niche-/metaniche-specific cytokine profiles. Our findings allow the definition of distinct metaniches according to their microbial composition, partly reflected by their cytokine profile, and provide new insights into microenvironmental similarities between anatomical diverse oral niches.
Genotype–phenotype correlation in seven motor neuron disease families with novel ALS2 mutations

Autosomal‐recessive mutations in the Alsin Rho guanine nucleotide exchange factor (ALS2) gene may cause specific subtypes of childhood‐onset progressive neurodegenerative motor neuron diseases (MND). These diseases can manifest with a clinical continuum from infantile ascending hereditary spastic paraplegia (IAHSP) to juvenile‐onset forms with or without lower motor neuron involvement, the juvenile primary lateral sclerosis (JPLS) and the juvenile amyotrophic lateral sclerosis (JALS). We report 11 patients from seven unrelated Turkish and Yemeni families with clinical signs of IAHSP or JPLS. We performed haplotype analysis or next‐generation panel sequencing followed by Sanger Sequencing to unravel the genetic disease cause. We described their clinical phenotype and analyzed the pathogenicity of the detected variants with bioinformatics tools. We further reviewed all previously reported cases with ALS2‐related MND. We identified five novel homozygous pathogenic variants in ALS2 at various positions: c. 275_276delAT (p.Tyr92CysfsTer11), c.1044C>G (p.Tyr348Ter), c.1718C>A (p.Ala573Glu), c.3161T>C (p.Leu1054Pro), and c.1471+1G>A (NM_020919.3, NP_065970.2). In our cohort, disease onset was in infancy or early childhood with rapid onset of motor neuron signs. Muscle weakness, spasticity, severe dysarthria, dysphagia, and facial weakness were common features in the first decade of life. Frameshift and nonsense mutations clustered in the N‐terminal Alsin domains are most prevalent. We enriched the mutational spectrum of ALS2‐related disorders with five novel pathogenic variants. Our study indicates a high detection rate of ALS2 mutations in patients with a clinically well‐characterized early onset MND. Intrafamilial and even interfamilial diversity in patients with identical pathogenic variants suggest yet unknown modifiers for phenotypic expression.
Performance of p-Toluenesulfonic Acid–Based Deep Eutectic Solvent in Denitrogenation: Computational Screening and Experimental Validation

Deep eutectic solvents (DESs) are green solvents developed as an alternative to conventional organic solvents and ionic liquids to extract nitrogen compounds from fuel oil. DESs based on p-toluenesulfonic acid (PTSA) are a new solvent class still under investigation for extraction/separation. This study investigated a new DES formed from a combination of tetrabutylphosphonium bromide (TBPBr) and PTSA at a 1:1 molar ratio. Two sets of ternary liquid–liquid equilibrium experiments were performed with different feed concentrations of nitrogen compounds ranging up to 20 mol% in gasoline and diesel model fuel oils. More than 99% of quinoline was extracted from heptane and pentadecane using the DES, leaving the minutest amount of the contaminant. Selectivity was up to 11,000 for the heptane system and up to 24,000 for the pentadecane system at room temperature. The raffinate phase’s proton nuclear magnetic resonance (1H-NMR) spectroscopy and GC analysis identified a significantly small amount of quinoline. The selectivity toward quinoline was significantly high at low solute concentrations. The root-mean-square deviation between experimental data and the non-random two-liquid (NRTL) model was 1.12% and 0.31% with heptane and pentadecane, respectively. The results showed that the TBPBr/PTSADES is considerably efficient in eliminating nitrogen compounds from fuel oil.