Miracle-dz/UniFAR-FTUs huggingface dataset:
Early Low-Level Arsenic Exposure Impacts Post-Synaptic Hippocampal Function in Juvenile Mice

Arsenic is a well-established carcinogen known to increase mortality, but its effects on the central nervous system are less well understood. Epidemiological studies suggest that early life exposure is associated with learning deficits and behavioral changes. Studies in arsenic-exposed rodents have begun to shed light on potential mechanistic underpinnings, including changes in synaptic transmission and plasticity. However, previous studies relied on extended exposure into adulthood, and little is known about the effect of arsenic exposure in early development. Here, we studied the effects of early developmental arsenic exposure in juvenile mice on synaptic transmission and plasticity in the hippocampus. C57BL/6J females were exposed to arsenic (0, 50 ppb, 36 ppm) via drinking water two weeks prior to mating, with continued exposure throughout gestation and parturition. Electrophysiological recordings were then performed on juvenile offspring prior to weaning. In this paradigm, the offspring are exposed to arsenic indirectly, via the mother. We found that high (36 ppm) and relatively low (50 ppb) arsenic exposure both decreased basal synaptic transmission. A compensatory increase in pre-synaptic vesicular release was only observed in the high-exposure group. These results suggest that indirect, ecologically relevant arsenic exposure in early development impacts hippocampal synaptic transmission and plasticity that could underlie learning deficits reported in epidemiological studies.
Measuring solar luminosity with a photodiode

This article describes a simple method suitable for an undergraduate laboratory to measure solar luminosity with a photodiode. Using an uncalibrated photodiode, the results of this method are typically accurate to about 10%. Corrections are required for the photodiode spectral response along the solar Planck curve, and for the sunlight absorbed in the Earth’s atmosphere. A value for the solar constant may also be obtained.
Exact Sequences for the Kasparov Groups of Graded Algebras

In [11] G. G. Kasparov defined the “operator K-functor” KK(A, B) associated with the graded C*-algebras A and B. If the algebras A and B are trivially graded and A is nuclear he proves six term exact sequence theorems. He asks whether this extends to the graded case. Here we prove such “six-term exact sequence” results in the graded case. Our proof does not use nuclearity of the algebra A. This condition is replaced by a completely positive lifting condition (Theorem 1.1). Using our result we may extend the results by M. Pimsner and D. Voiculescu on the K groups of crossed products by free groups to KK groups [15]. We give however a different way of computing these groups using the equivariant KK-theory developed by G. G. Kasparov in [12]. This method also allows us to compute the KK groups of crossed products by PSL 2(Z).
Electrical resistance tomography sensor simulations: comparison with experiments

This paper compares experimental results (differences of potential), obtained with a 16-electrode electrical resistance tomography (ERT) device using the adjacent-electrode pair measurement strategy, with finite-element method (FEM) simulations in two and three dimensions. In the first part of the paper, ERT measurements made on a homogeneous medium are compared with two- and three-dimensional FEM simulations. It is shown that the dependence of the electrical field on the axial coordinate cannot be neglected. Consequently, only the three-dimensional FEM simulations are able to fit the experimental results. In the second part of the paper, ERT measurements on static physical phantoms immersed in water evidence that ERT is significantly more sensitive to non-symmetrical distributions than to symmetrical ones. This observation is confirmed by three-dimensional FEM simulations performed on numerical phantoms that mimic the physical ones. In the last part of the paper, an attempt to use three-dimensional simulations to determine the characteristics (diameter and gas content) of a gas core created by injecting a gas flow from a single-orifice gas sparger leads to promising results.
Salient health goal, salient restoration? A transformative model of wellness tourism

ABSTRACT Although pursuing health and restoration has become a salient motivation for contemporary tourists, the transformative process of how health-seeking tourists achieve restoration in wellness tourism destinations remains unclear. Grounded in goal systems theory and cognitive appraisal theory, this study investigated wellness tourists’ recovery-acquisition process. Through analyses of 390 on-site survey questionnaires collected in Dujiangyan, China, the result revealed health goal salience significantly predicted perceived destination restorative qualities and tourist engagement. Besides, perceived destination restorative qualities positively influenced tourist engagement, and together, these two constructs exerted a positive impact on recovery perceptions. Additionally, resource uniqueness perception further enhanced such impact.
Relationship between fibrinogen level and advanced colorectal adenoma among inpatients: A retrospective case-control study

Objective This study was to explore the relationship between fibrinogen and advanced colorectal adenoma among inpatients. Methods From April 2015 to June 2022, 3738 participants (566 case subjects and 3172 control subjects) who underwent colonoscopies enrolled, and smooth curve fitting and logistic regression models were applied to explore the association between fibrinogen and advanced colorectal adenoma. In addition, sensitivity and subgroup analyses were performed to assess the stability of the results. Results Compared with lower fibrinogen quantile 1 (< 2.4 g/L), the adjusted OR values for fibrinogen and advanced colorectal adenoma in quantile 2 (2.4–2.75 g/L), quantile 3 (2.76–3.15 g/L), and quantile 4 (≥3.16 g/L) were 1.03 (95% confidence interval [CI]: 0.76–1.41), 1.37 (95% CI: 1.01–1.85), and 1.43 (95% CI: 1.06–1.94), respectively. A linear relationship between fibrinogen and advanced colorectal adenoma was observed. Sensitivity and subgroup analyses showed stable results. Conclusion Complements the evidence that fibrinogen was positively associated with advanced adenomas, suggesting that fibrinogen may play a role in the adenoma-carcinoma sequence.
Stability of Graphene/Intercalated Oxygen/Ru(0001) as Studied by Thermal Desorption of CO and CO2 Molecules

Formation of graphene on Ru(0001) by exposure to ethylene and subsequent annealing has been studied by low-energy electron diffraction, X-ray photoelectron spectroscopy, and ultraviolet photoelectron spectroscopy. The stability of graphene/intercalated oxygen/Ru(0001) has been investigated by temperature programmed desorption spectroscopy. Desorption of CO and CO2 was observed upon heating the samples to temperatures above 700 K. It was found that the graphene layer was partly intact after the desorption run and that the intercalated oxygen was removed. It was concluded that the oxygen-intercalated graphene layer was stable up to temperatures of about 700 K.
Experimental monitoring of nonlinear wave interactions in crab orchard sandstone under uniaxial load

Abstract When two waves interact within a rock sample, the interaction strength depends strongly on the sample’s microstructural properties, including the orientation of the sample layering. The study that established this dependence on layering speculated that the differences were caused by cracks aligned with the layers in the sample. To test this, we applied a uniaxial load to similar samples of Crab Orchard Sandstone and measured the nonlinear interaction as a function of the applied load and layer orientation. We show that the dependence of the nonlinear signal changes on applied load is exponential, with a characteristic load of 11.4–12.5 MPa that is independent of sample orientation and probe wavetype (P or S); this value agrees with results from the literature, but does not support the cracks hypothesis.
Impact of In-Process Crystallinity of Biodegradable Scaffolds Fabricated by Material Extrusion on the Micro- and Nanosurface Topography, Viability, Proliferation, and Differentiation of Human Mesenchymal Stromal Cells

Due to affordability, and the ability to parametrically control the vital processing parameters, material extrusion is a widely accepted technology in tissue engineering. Material extrusion offers sufficient control over pore size, geometry, and spatial distribution, and can also yield different levels of in-process crystallinity in the resulting matrix. In this study, an empirical model based on four process parameters—extruder temperature, extrusion speed, layer thickness, and build plate temperature—was used to control the level of in-process crystallinity of polylactic acid (PLA) scaffolds. Two sets of scaffolds were fabricated, with low- and high-crystallinity content, and subsequently seeded with human mesenchymal stromal cells (hMSC). The biochemical activity of hMSC cells was tested by examining the DNA content, lactate dehydrogenase (LDH) activity, and alkaline phosphatase (ALP) tests. The results of this 21-day in vitro experiment showed that high level crystallinity scaffolds performed significantly better in terms of cell response. Follow-up tests revealed that the two types of scaffolds were equivalent in terms of hydrophobicity, and module of elasticity. However, detailed examination of their micro- and nanosurface topographic features revealed that the higher crystallinity scaffolds featured pronounced nonuniformity and a larger number of summits per sampling area, which was the main contributor to a significantly better cell response.
The “Bald Disease” of the Sea Urchin Paracentrotus lividus: Pathogenicity, Molecular Identification of the Causative Agent and Therapeutic Approach

In recent decades, various species of Mediterranean sea urchins, including Paracentrotus lividus, have been subject to widespread seasonal episodes of mass mortality whose causative agents are still unclear. In particular, P. lividus is subject to late winter events of mortality, due to a disease manifested by a massive loss of spines and the presence of greenish amorphous material on the tests (i.e., the sea urchin skeleton consisting of spongeous calcite). Documented mortality events show a seasonal epidemic diffusion and might produce economic losses also in aquaculture facilities, besides the environmental constraints to its diffusion. We collected individuals showing conspicuous lesions on the body surface and reared them in recirculated aquaria. Samples of external mucous were collected along with coelomic liquids and cultured to isolate bacterial and fungal strains, further submitted to molecular identification through the amplification of prokaryotic 16S rDNA. In addition, pools of infected sea urchins were reared in recirculated tanks after short baths in a formulated therapeutic compound and their survival rates were compared to non-treated individuals for variable periods. Here, we aimed at a redescription of the etiopathogenetic nature of the parasites and tested the efficacy of a possible treatment, to be proposed for aquaculture purposes.
The reciprocal changes in dominant species with complete metabolic functions explain the decoupling phenomenon of microbial taxonomic and functional composition in a grassland

The decoupling of microbial functional and taxonomic components refers to the phenomenon that a drastic change in microbial taxonomic composition leads to no or only a gentle change in functional composition. Although many studies have identified this phenomenon, the mechanisms underlying it are still unclear. Here we demonstrate, using metagenomics data from a steppe grassland soil under different grazing and phosphorus addition treatments, that there is no “decoupling” in the variation of taxonomic and metabolic functional composition of the microbial community within functional groups at species level. In contrast, the high consistency and complementarity between the abundance and functional gene diversity of two dominant species made metabolic functions unaffected by grazing and phosphorus addition. This complementarity between the two dominant species shapes a bistability pattern that differs from functional redundancy in that only two species cannot form observable redundancy in a large microbial community. In other words, the “monopoly” of metabolic functions by the two most abundant species leads to the disappearance of functional redundancy. Our findings imply that for soil microbial communities, the impact of species identity on metabolic functions is much greater than that of species diversity, and it is more important to monitor the dynamics of key dominant microorganisms for accurately predicting the changes in the metabolic functions of the ecosystems.
Neurofilament Levels in Dendritic Spines Associate with Synaptic Status

Neurofilaments are one of the main cytoskeletal components in neurons; they can be found in the form of oligomers at pre- and postsynapses. How their presence is regulated at the postsynapse remains largely unclear. Here we systematically quantified, by immunolabeling, the occurrence of the neurofilament isoform triplet neurofilament light (NFL), medium (NFM), and heavy (NFH) at the postsynapse using STED nanoscopy together with markers of synaptic strength and activity. Our data show that, within dendritic spines, neurofilament isoforms rarely colocalize with each other and that they are present to different extents, with NFL being the most abundant isoform. The amount of the three isoforms correlates with markers of postsynaptic strength and presynaptic activity to varying degrees: NFL shows the highest correlation to both synaptic traits, suggesting its involvement in synaptic response, while NFM exhibits the lowest correlations. By quantifying the presence of neurofilaments at the postsynapse within the context of the synaptic status, this work sheds new light on the regulation of synaptic neurofilaments and their possible contribution to synaptopathies.
Treg-specific deletion of the phosphatase SHP-1 impairs control of inflammation in vivo

Introduction To achieve a healthy and functional immune system, a delicate balance exists between the activation of conventional T cells (Tcon cells) and the suppression by regulatory T cells (Treg). The tyrosine phosphatase SHP-1, a negative regulator of TCR signaling, shapes this ‘activation-suppression’ balance by modulating Tcon cell resistance to Treg-mediated suppression. Treg cells also express SHP-1, but its role in influencing Treg function is still not fully understood. Methods We generated a Treg-specific SHP-1 deletion model, Foxp3Cre+ Shp-1f/f , to address how SHP-1 affects Treg function and thereby contributes to T cell homeostasis using a combination of ex vivo studies and in vivo models of inflammation and autoimmunity. Results We show that SHP-1 modulates Treg suppressive function at different levels. First, at the intracellular signaling level in Treg cells, SHP-1 attenuates TCR-dependent Akt phosphorylation, with loss of SHP-1 driving Treg cells towards a glycolysis pathway. At the functional level, SHP-1 expression limits the in vivo accumulation of CD44hiCD62Llo T cells within the steady state Tcon populations (both CD8+ as well as CD4+ Tcon). Further, SHP-1-deficient Treg cells are less efficient in suppressing inflammation in vivo; mechanistically, this appears to be due to a failure to survive or a defect in migration of SHP-1-deficient Treg cells to peripheral inflammation sites. Conclusion Our data identify SHP-1 as an important intracellular mediator for fine-tuning the balance between Treg-mediated suppression and Tcon activation/resistance.
Clinical features and diagnostic value of metagenomic next -generation sequencing in five cases of non-HIV related Pneumocystis jirovecii pneumonia in children

Background Pneumocystis jirovecii (PJ) is an opportunistic pathogenic fungus, and PJ pneumonia (PJP) is a commonly problem in HIV-positive patients. While PJP is not caused by HIV, it generally advances rapidly and can quickly lead to severe respiratory failure. To improve pediatricians’ understanding of the condition and aid early accurate diagnoses and therapy, we examined the clinical characteristics of five instances of non-HIV related PJP (NH-PJP) in children and the efficacy of metagenomic next-generation sequencing (mNGS) in its diagnosis. Methods From January 2020 to June 2022, five children with NH-PJP were admitted to the PICU of the First Affiliated Hospital of Zhengzhou University. We retrospectively summarize the clinical presentation, previous histories, routine laboratory findings, treatment, outcome of regression, and results of mNGS in these five children. Results Five male children between the ages of 11 months and 14 years had an acute onset on NH-PJP, three of the children had chest tightness after activity, shortness of breath and paroxysmal dry cough, — and two had high fever and dry cough. All five of the children had several flocculent high-density pictures in both lungs at the beginning of the disease, and lung auscultation revealed coarse breath sounds in both lungs, one of which was accompanied by a modest quantity of dry rales. PJ nuclear sequences were found in one patient and four patients’ blood and alveolar lavage fluid. All five children were treated with Trimethoprim-sulfamethoxazole (TMP-SMX) in combination with Caspofungin and corresponding symptomatic treatment. Four patients were cured and one patient died. Conclusion Children commonly encounter an initial exposure to NH-PJP, which manifests as a high fever, dry cough, chest discomfort, dyspnea that worsens over time, fast disease progression, and a high death rate. The clinical presentation of children with PJ infection should be taken into consideration along with the results for diagnose. mNGS has higher sensitivity and a shorter detection period compared to identification of PJP.
Microbiomes of native Aotearoa New Zealand animals

: Microbiome research is revealing the profound effects that microbial inhabitants can have on their animal hosts. Recent and rapid advances in sequencing technologies have allowed biologists to characterise the microbial constituents of a variety of host organisms, giving greater insights into these intimate relationships than ever before. For many animal species, microbiomes serve as an interface between host and environment, with associated microorganisms playing functional roles in nutrition, immunity, reproduction, and even behaviour. In this Review, we offer a brief overview of microbiome research methodology before summarising previous and ongoing research into the microbiomes of native New Zealand animals. Our unique endemic fauna, evolved during tens of millions of years of geographic isolation, offers exciting opportunities for microbiome research across a range of diverse taxa and we highlight key findings of relevant studies. Moreover, while recognising the crucial role that 16S rRNA gene sequencing plays in microbiome research, we conclude the Review with a look beyond 16S and consider what other technologies can bring to this field. We encourage further investigation into the functional roles of microbial species across a broader range of host-animal taxa across New Zealand, both in wild and captive states.
The Role of IL-13 and IL-4 in Adipose Tissue Fibrosis

White adipose tissue (WAT) fibrosis, characterized by an excess of extracellular (ECM) matrix components, is strongly associated with WAT inflammation and dysfunction due to obesity. Interleukin (IL)-13 and IL-4 were recently identified as critical mediators in the pathogenesis of fibrotic diseases. However, their role in WAT fibrosis is still ill-defined. We therefore established an ex vivo WAT organotypic culture system and demonstrated an upregulation of fibrosis-related genes and an increase of α-smooth muscle actin (αSMA) and fibronectin abundance upon dose-dependent stimulation with IL-13/IL-4. These fibrotic effects were lost in WAT lacking il4ra, which encodes for the underlying receptor controlling this process. Adipose tissue macrophages were found to play a key role in mediating IL-13/IL-4 effects in WAT fibrosis as their depletion through clodronate dramatically decreased the fibrotic phenotype. IL-4-induced WAT fibrosis was partly confirmed in mice injected intraperitoneally with IL-4. Furthermore, gene correlation analyses of human WAT samples revealed a strong positive correlation of fibrosis markers with IL-13/IL-4 receptors, whereas IL13 and IL4 correlations failed to confirm this association. In conclusion, IL-13 and IL-4 can induce WAT fibrosis ex vivo and partly in vivo, but their role in human WAT remains to be further elucidated.
Run-to-run variations, asymmetric pulses, and long time-scale transient phenomena in dielectric-barrier atmospheric pressure glow discharges

The dielectric-barrier (DB) discharge is an important approach to generate uniform non-equilibrium atmospheric-pressure glow discharges. We report run-to-run variations, asymmetric pulse formation and long time-scale transient phenomena in these discharges. For similar DB discharge geometric and operating conditions, we observe significant run-to-run variations as manifested in the different voltage–current waveforms at the start of each new run. These run-to-run variations are also accompanied by asymmetric pulses at the start of each run. The variations are observed to drift to a repeatable true steady-state condition on time scales of order tens of minutes to hours. Asymmetric pulse waveforms drift to a symmetric pulse waveform at the true steady state. We explore reasons for these phenomena and rule out thermal drift during a discharge run and gas-phase impurity buildup as potential causes. The most plausible explanation appears to be variations in the surface characteristics of the DBs between two consecutive runs owing to varying inter-run environmental exposure and the conditioning of the dielectric surface during a run owing to plasma–surface interactions. We speculate that the dielectric surface state affects the secondary electron emission coefficient of the surface which in turn is manifested in the discharge properties. A zero-dimensional model of the discharge is used to explore the effect of secondary electron emission.