Miracle-dz/UniFAR-FTUs huggingface dataset:
Intraoperative Impedance-Based Estimation of Cochlear Implant Electrode Array Insertion Depth

<italic>Objective:</italic> Cochlear implant impedances are influenced by the intracochlear position of the electrodes. Herein, we present an intuitive approach to calculate tissue resistances from transimpedance recordings, ultimately enabling to estimate the insertion depth of cochlear implant electrodes. <italic>Methods:</italic> Electrode positions were measured in computed-tomography images of 20 subjects implanted with the same lateral wall cochlear implant model. The tissue resistances were estimated from intraoperative telemetry data using bivariate spline extrapolation from the transimpedance recordings. Using a phenomenological model, the electrode insertion depths were estimated. <italic>Results:</italic> The proposed method enabled the linear insertion depth of all electrodes to be estimated with an average error of 0.76 <inline-formula><tex-math notation="LaTeX">$\pm$</tex-math></inline-formula> 0.53 mm. <italic>Conclusion:</italic> Intraoperative telemetry recordings correlate with the linear and angular depth of electrode insertion, enabling estimations with an accuracy that can be useful for clinical applications. <italic>Significance:</italic> The proposed method can be used to objectively assess surgical outcomes during and after cochlear implantation based on non-invasive and readily available telemetry recordings.
Yoga Meditation Enhances Proprioception and Balance in Individuals Diagnosed With Parkinson’s Disease

This study compared the effectiveness of two proprioceptive exercise programs for persons diagnosed with Parkinson’s disease (PD). Thirty-three patients with mild to moderate PD were randomly assigned to a yoga meditation program (YoMed) or to an established proprioceptive training program (PRO). Both interventions included twice weekly sessions (45 minutes each), spanning a 12-week period. Outcome measures included: joint position sense (JPS45°, JPS55°, JPS65°) and joint kinesthesia (JKFlex and JKExt), the Tinetti Balance Assessment Tool (TIN), Falls Efficacy Scale (FES), Balance Error Scoring System (BESS), dynamic posturography (DMA and TIME) and the Timed Up-and-Go Test (TUG). Test administrators were blinded to group affiliation. Significant between-group differences favoring the YoMed group were observed for TIN (p = 0.01, d = 0.77) and JKFlex (p = 0.05, d = −0.72). DMA and TIME scores significantly improved for both groups, and no adverse events were reported. These findings indicate that the YoMed program is safe and effective for patients with PD. Researchers should continue to examine the clinical efficacy of mind-body techniques to improve movement control and body awareness in this population.
Microbial communities can predict the ecological condition of headwater streams

Humanity’s reliance on clean water and the ecosystem services provided makes identifying efficient and effective ways to assess the ecological condition of streams ever more important. We used high throughput sequencing of the 16S rRNA region to explore relationships between stream microbial communities, environmental attributes, and assessments of stream ecological condition. Bacteria and archaea in microbial community samples collected from the water column and from stream sediments during spring and summer were used to replicate standard assessments of ecological condition performed with benthic macroinvertebrate collections via the Benthic Index of Biotic Integrity (BIBI). Microbe-based condition assessments were generated at different levels of taxonomic resolution from phylum to OTU (Operational Taxonomic Units) in order to understand appropriate levels of taxonomic aggregation. Stream sediment microbial communities from both spring and summer were much better than the water column at replicating BIBI condition assessment results. Accuracies were as high as 100% on training data used to build the models and up to 80% on validation data used to assess predictions. Assessments using all OTUs usually had the highest accuracy on training data, but were lower on validation data due to overfitting. In contrast, assessments at the order-level had similar performance accuracy for validation data, and a reduced subset of orders also performed well, suggesting the method could be generalized to other watersheds. Subsets of the important orders responded similarly to environmental gradients compared to the entire community, where strong shifts in community structure occurred for known aquatic stressors such as pH, dissolved organic carbon, and nitrate nitrogen. The results suggest the stream microbes may be useful for assessing the ecological condition of streams and especially useful for stream restorations where many eukaryotic taxa have been eliminated due to prior degradation and are unable to recolonize.
A 119dB Dynamic Range Charge Counting Light-to-Digital Converter For Wearable PPG/NIRS Monitoring Applications

This paper presents a low power, high dynamic range (DR), reconfigurable light-to-digital converter (LDC) for photoplethysmogram (PPG), and near-infrared spectroscopy (NIRS) sensor readouts. The proposed LDC utilizes a current integration and a charge counting operation to directly convert the photocurrent to a digital code, reducing the noise contributors in the system. This LDC consists of a latched comparator, a low-noise current reference, a counter, and a multi-function integrator, which is used in both signal amplification and charge counting based data quantization. Furthermore, a current DAC is used to further increase the DR by canceling the baseline current. The LDC together with LED drivers and auxiliary digital circuitry are implemented in a standard 0.18 μm CMOS process and characterized experimentally. The LDC and LED drivers consume a total power of 196 μW while achieving a maximum 119 dB DR. The charge counting clock, and the pulse repetition frequency of the LED driver can be reconfigured, providing a wide range of power-resolution trade-off. At a minimum power consumption of 87 μW, the LDC still achieves 95 dB DR. The LDC is also validated with on-body PPG and NIRS measurement by using a photodiode (PD) and a silicon photomultiplier (SIPM), respectively.
A cost‐effective approach to increasing participation in patient‐reported outcomes research in cancer: A randomized trial of video invitations

Maximizing participation in cancer research is important to improve the validity and generalizability of research findings. We conducted a four‐arm randomized controlled trial to test the impact of a novel video invitation on participant response. We invited childhood cancer survivors and parents of survivors <16 years to complete questionnaires. We compared response rates to an invitation letter (control) vs receiving the letter plus a video invitation on a flash drive presented by a childhood cancer survivor, a pediatric oncologist or a researcher. We explored factors associated with viewing the video and examined the impact of enclosing the USB on study costs. Overall 54% (634/1176) of questionnaires were returned. Participants who received a video invitation on a USB were more likely to return the questionnaire than those who did not (58% vs 47%, P < .001). Participation rate did not significantly differ by video presenter. Forty‐seven percent of participants who received a USB reported watching the video, of whom 48% reported that the video influenced their decision to participate. Participants with a lower income (OR = 0.43, 95% CI = 0.25‐0.74, P = .002) were more likely to report watching the video. Participants who received a video invitation required significantly fewer reminder calls than those who only received a written invitation (mean = 1.6 vs 1.1 calls, P < .001), resulting in a 25% recruitment cost‐saving for the study. Adding a USB with a video study invitation to recruitment packages is a cost‐effective way of improving study participation. This is important in an era of declining study participation and underrepresentation of vulnerable populations in research.
Beyond Cognitive Screening: Establishing an Interprofessional Perioperative Brain Health Initiative

Perioperative neurocognitive disorder (PND) is now recognized as the most common postoperative complication in older surgical patients. Current multidisciplinary guidelines recommend simple cognitive screening of older adults before surgery. Patients identified at risk should have input from an interprofessional team with expertise caring for older surgical patients. Data suggest these recommendations are infrequently met. We set out to test feasibility of routine cognitive screening in a busy preoperative assessment clinic and establish a perioperative pathway with multidisciplinary support for patients identified at risk.
YEATS2 is a target of HIF1α and promotes pancreatic cancer cell proliferation and migration

Hypoxia is involved in the development of pancreatic cancer (PC). The responses of hypoxia‐associated genes and their regulated mechanisms are largely unknown. In this study, through bioinformatic analysis and quantitative real‐time polymerase chain reaction, the YEATS domain containing 2 (YEATS2) was determined to be a key hypoxia‐associated gene. It was increased in PC cells under hypoxia, upregulated in PC tissues, and predicted poor outcome. YEATS2 inhibition decreased the proliferation and migration of PC cells under both normoxia and hypoxia in vitro as well as proliferation and metastasis in vivo. We found that hypoxia‐inducible factor 1α (HIF1α) regulated the expression of YEATS2 via binding to the hypoxia response element (HRE) of YEATS2 and coexpressed with YEATS2 in PC tissues. Overexpression of YEATS2 blocked the inhibitory effects of HIF1α silence on PC cell proliferation and migration under hypoxia. Collectively, our study revealed that YEATS2 is a target gene of HIF1α and promotes PC development under hypoxia.
Three-Dimensional Characterization of the Normal Human Parafoveal Microvasculature Using Structural Criteria and High-Resolution Confocal Microscopy

Purpose To use structural criteria to reconcile the three-dimensional organization and connectivity of the parafoveal microvasculature. Methods The parafoveal microvasculature was perfused and labeled in 16 normal human donor eyes for lectin, alpha smooth muscle actin, and filamentous actin. Established structural criteria gathered using confocal microscopy, including vessel diameter, endothelial cell morphology, and presence/density of smooth muscle cells, were used to differentiate arteries, arterioles, capillaries, venules, and veins. Three-dimensional visualization strategies were used to define the connections between retinal arteries and veins within the superficial vascular plexus (SVP), intermediate capillary plexus (ICP), and deep capillary plexus (DCP). Results The parafoveal microvasculature has two different inflow patterns and seven different outflow patterns. The SVP and ICP were connected to retinal arteries by arterioles. Inflow into the DCP occurred only via small arterioles (a1; mean diameter, 8.3 µm) that originated from the ICP. Direct connections between the DCP and retinal arteries were not identified. Each capillary plexus formed its own venule that drained independently or in conjunction with venules from other plexuses into a retinal vein at the level of the ganglion cell layer. For the DCP, a1 was significantly smaller than its draining venule (mean diameter, 18.8 µm; P < 0.001). Conclusions The SVP and ICP of the parafoveal microvasculature have both in series and in parallel arterial and venous connections. Arterial supply to the DCP originates from the ICP, but with direct drainage to the retinal vein. These findings may help to develop an understanding of the pattern of retinal lesions characterizing a myriad of retinal vascular diseases.
Controlled transmission of African cassava mosaic virus (ACMV) by Bemisia tabaci from cassava (Manihot esculenta Crantz) to seedlings of physic nut (Jatropha curcas L.)

Jatropha curcas , a plant with great biodiesel potential is also used to reduce the population of whiteflies, Bemisia tabaci on cassava fields when planted as a hedge. We therefore, investigated the transmission of African cassava mosaic virus (ACMV) by the whitefly vector from cassava to seedlings of 10 accessions of J. curcas as part of a wider investigation on the possible role of J. curcas as an alternative host of ACMV. Transmission tests were conducted in insect-proof cages using adult B. tabaci collected from ACMV-infected cassava in the field, at a rate of three adult whiteflies per J. curcas seedling and a transmission feeding period of four days. Twenty one (21) days after the infestation, leaf samples from individual plants of the 10 J. curcas accessions were tested for the presence of ACMV by the polymerase chain reaction (PCR) and the double-antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA), using the monoclonal antibodies SCRI 33. DAS-ELISA detected ACMV in five out of the ten J. curcas accessions while PCR detected it in eight of the 10 accessions. Furthermore, 18 out of the 35 Nicotiana benthamiana indicator plants mechanically inoculated with sap from symptomatic J. curcas seedlings produced symptoms typical of ACMV infection. This indicates that J. curcas is a likely host of ACMV and it may in turn, be able to infect cassava, and presumably other ACMV-susceptible hosts, in the presence of the vector. Keywords : Jatropha curcas accessions, controlled transmission, mechanical inoculation, enzyme-linked immunosorbent assay, African cassava mosaic virus (ACMV)-susceptible hosts. African Journal of Biotechnology Vol. 12(28), pp. 4465-4472
Roles of Capsule Endoscopy and Device-Assisted Enteroscopy in the Diagnosis and Treatment of Small-Bowel Tumors

With the development of capsule endoscopy (CE) and device-assisted enteroscopy (DAE), the incidence of small-bowel tumors has increased and the characteristics of these tumors have changed. In addition, the diagnostic and therapeutic approaches for small-bowel tumors have diversified. CE is a simple, noninvasive method that aid in the visualization the entire small bowel. CE is considered the initial approach for small-bowel tumors. DAE can be used to perform endoscopic procedures such as bleeding control, polypectomy, stent insertion, and tattooing, as well as for diagnosis through visualization or tissue sampling. Therapeutic intervention with DAE is particularly useful in polyposis syndromes such as familial adenomatous polyposis and Peutz-Jeghers syndrome. This review will discuss the roles of CE and DAE in the diagnosis and treatment of small-bowel tumors.
Impacts of bisphenol A analogues on zebrafish post‐embryonic brain

Bisphenol A (BPA) is a widely studied and well‐recognised endocrine‐disrupting chemical, and one of the current issues is its safe replacement by various analogues. Using larva zebrafish as a model, the present study reveals that moderate and chronic exposure to BPA analogues such as bisphenol S, bisphenol F and bisphenol AF may also affect vertebrate neurodevelopment and locomotor activity. Several parameters of embryo‐larval development were investigated, such as mortality, hatching, number of mitotically active cell, as defined by 5‐bromo‐2'‐deoxyuridine incorporation and proliferative cell nuclear antigen labelling, aromatase B protein expression in radial glial cell and locomotor activity. Our results show that exposure to several bisphenol analogues induced an acceleration of embryo hatching rate. At the level of the developing brain, a strong up‐regulation of the oestrogen‐sensitive Aromatase B was also detected in the hypothalamic region. This up‐regulation was not associated with effects on the numbers of mitotically active progenitors nor differentiated neurones in the preoptic area and in the nuclear recessus posterior of the hypothalamus zebrafish larvae. Furthermore, using a high‐throughput video tracking system to monitor locomotor activity in zebrafish larvae, we show that some bisphenol analogues, such as bisphenol AF, significantly reduced locomotor activity following 6 days of exposure. Taken together, our study provides evidence that BPA analogues can also affect the neurobehavioural development of zebrafish.
METTL3 May Regulate Testicular Germ Cell Tumors Through EMT and Immune Pathways

Testicular germ cell tumors (TGCTs) are highly prevalent in young men aged 20–40 years and are one of the most common lethal solid tumors in men of this age. Due to the current unclear mechanism of tumor development, there is a lack of effective treatment, and therefore in-depth research of the molecular mechanism of the occurrence and development of TGCT and the search for suitable and effective therapeutic targets and molecular markers are of great significance for achieving effective treatment. METTL3 is a very important methylase, which has been implicated in the progression of many cancers, but the role of METTL3 in TGCT has not been fully elucidated. In this article, we found that METTL3 expression was significantly downregulated in TGCT tissues, and patients with low expression levels had lower overall survival and relapse-free survival rates. After overexpressing METTL3, cell proliferation, invasion, and migration ability significantly increased, while influencing the expression of epithelial–mesenchymal transition (EMT)-related proteins. In addition, we observed that the expression level of METTL3 positively correlated with molecular markers and infiltration level of CD8+ and CD4+ T cells and natural killer cells. In sum, our findings identified that METTL3 can be used as an independent prognostic marker in patients with TGCT. METTL3 participates in the proliferation, migration, and invasion of TGCT cells by regulating the expression of EMT-related genes and may also play a role in activating the tumor immune response in TGCT.
Belowground organism activities affect plant aboveground phenotype, inducing plant tolerance to parasites

Soil fauna activities are probably more important than currently acknowledged in determining individual plant response to stresses and overall plant diversity. Here we demonstrate that the positive effect of earthworms on rice could be the result of a systemic effect on plant physiology. Moreover, this effect could improve tolerance to stressors such as parasitic nematodes. In a controlled experiment, an 82% decrease in the production of infested plants was suppressed when earthworms were present. Earthworms had no direct effect on nematode population size. In their presence, however, root biomass was not affected by nematodes and the expected inhibition of photosynthesis was suppressed. In the leaves, the expression of three stress-responsive genes (coding for lipoxygenase, phospholipase D and cysteine protease) was modulated by the presence of belowground invertebrate activities. We document conflicting systemic effects of parasitic nematodes and beneficial earthworms, although we cannot precisely identify the mechanism involved. These results reveal the importance of nontrophic belowground/aboveground interactions for plant health and response to stresses.
Is Platelet Rich Plasma Injection an Effective Treatment for Hair Loss in Androgenic Alopecia and Alopecia Areata

Objective: The objective of this selective EBM review is to determine whether or not Platelet Rich Plasma is efficacious in regrowth of hair in both androgenic alopecia and alopecia areata. Study Design: Review of two blinded randomized controlled trials and one prospective cohort study. Populations studied were Adults over 18 with hair loss. All articles published in peerreviewed journals in English. Data Source: 3 articles found via PubMed and NCBI Outcomes Measured: One prospective cohort study, and two randomized control trials evaluating hair regrowth after PRP scalp injections. Outcomes were reported by patient satisfaction, mean hair increase and hair regrowth in hair loss areas. Results: Gentile (2015) enrolled 23 patients with androgenic alopecia, with 3 withdrawals. After PRP injection a mean increase in total hair density of 45.9 hairs per cm2 compared with baseline was observed at 3 months. Ginki (2014) enrolled 22 volunteers with androgenic alopecia, with 2 withdrawals. Hair densities were reported at monthly intervals with the highest reported at 4 months: 170.70 plus or minus 37.81 hairs. Trink (2013) enrolled 45 patients with alopecia areata, with no withdrawals. 60 percent of the patients in the PRP group had complete remission of alopecia as compared to placebo. Conclusion: PRP injection for androgenetic alopecia and alopecia areata is a simple, safe and cost effective treatment for hair loss or thinning.
Prevalence of Vulvovaginal Candidiasis in Ahvaz, Southwest Iran: A Semi-Large Scale Study

Background: Candida vaginitisorvulvovaginalcandidiasis(VVC)isthemostcommonmucosalinfectionof thefemalegenitaltract caused by diﬀerent species of Candida . Despite several antifungal therapies and personal hygiene practices, VVC has remained an important public health problem aﬀecting millions of women worldwide. Objectives: Theaimof thisstudywastodeterminetheprevalenceof VVCandthefrequencyof causativeagentsinwomenof diﬀerent age groups referring to the midwifery clinics in Ahvaz, Iran, from January 2017 to March 2018. Methods: Sampleswereobtainedfrom493womenaged15-64yearswithsignsandsymptomsof VVCusingendocervicalswabs. All collectedsampleswereculturedonCHROMagar Candida platesandincubatedat35°Cfor24-72h. Various Candida sp. wereinitially identiﬁed using morphologic characteristics and physiologic features, and ﬁnally conﬁrmed with PCR-RFLP. Results: Totally196(39.76%)caseswerediagnosedasVVC,of whichnine(4.6%)wereasrecurrentvulvovaginalcandidiasis. Morethan half of thecaseswereintheagegroupof 21-30years. Candidaalbicans wasthemostcommonlyidentiﬁedspecies(71.1%),followedby C.glabrata (20.4%)andothernon- C.albicans species(8.6%). Infectioninpregnantwomendecreasedinthethirdtrimestercompared to the ﬁrst and second trimesters of pregnancy. Conclusions: Vulvovaginal candidiasis is a relatively common gynecologic problem in Ahvaz. Although the frequency of non- C. albicans species in VVC has increased, C. albicans is still the predominant species.
The Effect of Fibrillar Aβ1-40 on Membrane Fluidity and Permeability

The time course of Aβ fibril formation was characterized using a variety of assays. The effect of Aβ on the membrane fluidity and permeability was assessed by monitoring the anisotropy of the fluorescent probe DPH and TMA-DPH and measuring the release of vesicle-entrapped with three different molecular weight fluorescence probes (ANTS / DPX, Calcein, FD-4). The results show fibrils had formed after 4 days. Aggregated Aβmay decrease the membrane fluidity and induce the leakage of ANTS and Calcein in a dose -dependent manner. These effects may have some relation with Aβ neurotoxicity.
Squalene: More than a Step toward Sterols

Squalene (SQ) is a natural triterpene widely distributed in nature. It is a metabolic intermediate of the sterol biosynthetic pathway and represents a possible target in different metabolic and oxidative stress-related disorders. Growing interest has been focused on SQ’s antioxidant properties, derived from its chemical structure. Strong evidence provided by ex vivo models underline its scavenging activity towards free radicals, whereas only a few studies have highlighted its effect in cellular models of oxidative stress. Given the role of unbalanced free radicals in both the onset and progression of several cardiovascular diseases, an in depth evaluation of SQ’s contribution to antioxidant defense mechanisms could represent a strategic approach in dealing with these pathological conditions. At present experimental results overall show a double-edged sword role of squalene in cardiovascular diseases and its function has to be better elucidated in order to establish intervention lines focused on its features. This review aims to summarize current knowledge about endogenous and exogenous sources of SQ and to point out the controversial role of SQ in cardiovascular physiology.