Miracle-dz/UniFAR-FTUs huggingface dataset:
Some of them came home: the Cayman Turtle Farm headstarting project for the green turtle Chelonia mydas

Headstarting is a management technique employed to enhance recruitment of turtles into diminished or extirpated marine turtle populations. Although there have been numerous projects worldwide, there has been a paucity of detailed investigations into its efficacy. Between 1980 and 2001, 16,422 captive-raised hatchlings and 14,347 yearling green marine turtles Chelonia mydas were released from the Cayman Turtle Farm. Approximately 80% of all turtles released were subject to some form of tagging, including living tags. A total of 392 tagged animals have been recaptured at intervals of up to 19 years. Of this total, 160 individuals were captured in the Cayman Islands and 232 were recorded from other locations within the wider Caribbean and southeastern USA. There was significant variation in the release-recapture intervals at the three countries with most returns (Cayman, Cuba and Nicaragua). A positive relationship exists between time at large and size at recapture and data suggest growth rates comparable to those of wild green turtles in the region. There have been at least six living tag returns, four involving turtles released as yearlings and two involving turtles released as hatchlings. This demonstrates an age at maturity that may be as short as 15–19 years, depending on stage of release. Results show that some headstarted turtles are moving around the Caribbean, surviving for long periods of time, contributing to the local breeding population, and are possibly displaying shifts in habitat utilization with age similar to those recorded by wild individuals.
Population Genomics Reveals Demographic History and Genomic Differentiation of Populus davidiana and Populus tremula

Forest trees can increase our understanding of how evolutionary processes drive the genomic landscape and understand speciation due to the majority of forest trees being distributed widely and able to adapt to different climates and environments. Populus davidiana and Populus tremula are among the most geographically widespread and ecologically important tree species in Northern Hemisphere. Whole-genome resequencing data of 41 individuals of P. davidiana and P. tremula throughout Eurasia was conducted, finding that genetic differentiation was evident between the two species, the FST values between P. davidiana and P. tremula was 0.3625. The ancestors of the two aspen diverged into P. davidiana and P. tremula species approximately 3.60 million years ago (Mya), which was in accordance with the rapid uplift of Qinghai–Tibet Plateau (QTP) around the Miocene/Pliocene boundary. The two species experienced a considerable long-term bottleneck after divergence, with population expansion beginning approximately 20,000 years ago after the end of the last glacial maximum. Although the majority of regions of genomic differentiation between the two species can be explained by neutral evolutionary processes, some outlier regions have also been tested that are significantly influenced by natural selection. We found that the highly differentiated regions of the two species exhibited significant positive selection characteristics, and also identified long-term balancing selection in the poorly differentiated regions in both species. Our results provide strong support for a role of linked selection in generating the heterogeneous genomic landscape of differentiation between P. davidiana and P. tremula. These results provide the detailed and comprehensive genomic insights into genetic diversity, demography, genetic burden, and adaptation in P. davidiana and P. tremula.
Functional strengthening through synaptic scaling upon connectivity disruption in neuronal cultures

An elusive phenomenon in network neuroscience is the extent of neuronal activity remodeling upon damage. Here, we investigate the action of gradual synaptic blockade on the effective connectivity in cortical networks in vitro. We use two neuronal cultures configurations—one formed by about 130 neuronal aggregates and another one formed by about 600 individual neurons—and monitor their spontaneous activity upon progressive weakening of excitatory connectivity. We report that the effective connectivity in all cultures exhibits a first phase of transient strengthening followed by a second phase of steady deterioration. We quantify these phases by measuring GEFF, the global efficiency in processing network information. We term hyperefficiency the sudden strengthening of GEFF upon network deterioration, which increases by 20–50% depending on culture type. Relying on numerical simulations we reveal the role of synaptic scaling, an activity–dependent mechanism for synaptic plasticity, in counteracting the perturbative action, neatly reproducing the observed hyperefficiency. Our results demonstrate the importance of synaptic scaling as resilience mechanism.
Inquiry-Based Learning and Conceptual Change in Balance Beam Understanding

Inquiry-based learning has the potential to foster conceptual change, but whether it can induce an advancement in strategy use is not yet known. Such an advancement seems plausible, because conceptual change can be reflected in the use of new strategies. Whether inquiry-based learning leads to advancement in strategy use can be tested with strategy-based tests, such as the balance beam test. Distinct strategies have been proposed and identified for this test. Therefore, the present study compared response patterns on the balance beam test before and after an inquiry-based lesson. The experimental condition completed a digital inquiry-based lesson about the balance beam (n = 113), and the control condition completed a similar inquiry-based lesson but investigated a different topic (n = 44). The participants were aged 8–13 years old and were unfamiliar with the law of moments. The balance beam test (pretest and posttest) consisted of 25 items. Overall accuracy in solving balance beam problems improved after the inquiry-based lesson in the balance beam (BB) condition but not in the control condition. Classes, identified with latent transition analysis (LTA), appeared to be globally in line with previously identified strategies in the balance beam test. Condition was entered as a covariate in the LTA to identify which changes in strategy use could be attributed to the experimental intervention. First, changes from pretest to posttest were found, which supported that a change in strategy use occurred in some children. Second, there were more improvements in the BB condition, and these improvements indicated larger gains compared to the control condition. This means that in science education, it is important to map out prior knowledge and its effect on learning paths. Overall, results suggested that conceptual change could be measured as a change in strategy use and modeled with LTA to reveal that 26% of the children showed conceptual change after a single inquiry-based lesson.
Correlation Between Thioredoxin-Interacting Protein and Nerve Conduction Velocity in Patients With Type 2 Diabetes Mellitus

Aims: To investigate the correlation between thioredoxin-interacting protein (TXNIP) and peripheral nerve conduction velocity (NCV) in patients with type 2 diabetes mellitus. Methods: In total, 338 patients with type 2 diabetes mellitus (T2DM) were included in this study. We collected the clinical data and measured the motor conduction velocities of the bilateral ulnar nerve, median nerve, tibial nerve, and common peroneal nerve, and the sensory conduction velocities of the ulnar nerve, median nerve, sural nerve, and superficial peroneal nerve. According to the results, the patients were divided into two groups: normal peripheral nerve conduction group (NCVN group) and abnormal peripheral nerve conduction group (NCVA group). The two groups were then compared in terms of the conventional biochemical index and the sugar metabolic index as well as the serum levels of TXNIP, reduced glutathione (GSH), total superoxide dismutase (SOD), malondialdehyde (MDA), and tumor necrosis factor alpha (TNF-α). The correlation between TXNIP and NCV was also analyzed. Results: Compared with the NCVN group, the TXNIP and MDA values were significantly increased in the NCVA group (P < 0.05). Among the patients with T2DM, age, fasting glucose, SDBG, and TXNIP were risk factors for NCV abnormality, while vitamin D3 was a protective factor. After adjusting for related confounding factors, TXNIP was significantly correlated with NCV (P < 0.05). Among the patients with T2DM, TXNIP was an independent risk factor for left ulnar motor conduction velocity (MCV), right ulnar MCV, left median MCV, and right median MCV. TNF-α was identified as a positive influencing factor for serum TXNIP, while serum TXNIP was a positive factor for TNF-α and MDA (both P < 0.05). Conclusion: Serum TXNIP is related to NCV in T2DM patients. In combination with oxidative stress and inflammation, TXNIP may affect diabetic peripheral neuropathy (DPN).
Probability of Spring Frosts, Not Growing Degree-Days, Drives Onset of Spruce Bud Burst in Plantations at the Boreal-Temperate Forest Ecotone

Climate warming-driven early leaf-out is expected to increase forest productivity but concurrently increases leaf exposure to spring frosts, which could reduce forests' net productivity. We hypothesized that due to their damaging effect on buds, spring frosts exert a stronger control on bud phenology than do growing degree-days. We monitored bud flush phenology of three white spruce seed sources (one local seed source from the boreal mixedwood forest and two seed sources from the temperate forest), one black spruce seed source originating from the boreal mixedwood forest and four nonlocal Norway spruce seed sources in 2016 and 2017 in two plantations located on both sides of the temperate-boreal mixedwood forest ecotone in eastern Canada (Quebec). We aimed to determine inter- and intraspecies variations in bud break timing and sensitivity to air temperature and photoperiod. We expected that bud break timing for boreal species and seed sources would be better synchronized with the decrease in frost probability than for nonlocal species and seed sources. We used mixed binomial regressions and AICc model selection to determine the best environmental variables predicting each transition from one stage of bud phenology to the next. At both plantation sites, white spruce bud flush began and ended earlier compared to black and Norway spruce. Buds of all spruce species were sensitive to frost probability for early phenological stages, whereas growing degree-days controlled the remaining stages. Photoperiod sensitivity was higher for white spruce compared to black and Norway spruce and reached its maximum in the temperate forest. At intraspecies level, the two southern white spruce seed sources opened their buds earlier than the local source and were more sensitive to photoperiod, which increased their exposure to spring frosts. Onset of spruce bud flush is driven by spring frosts and photoperiod, but once started, bud phenology responds to temperature. The high photoperiod sensitivity in white spruces could counterbalance climate warming and limit future premature leaf-out, whereas the low photoperiod sensitivity in black spruce should not restrain leaf-out advancement with climate warming. Our results call for adapting the temperature-driven hypotheses of ecophysiological models predicting leaf-out to include spring frost probability.
The Spelling Errors of French and English Children With Developmental Language Disorder at the End of Primary School

Children with Developmental Language Disorder (DLD) often struggle learning to spell. However, it is still unclear where their spelling difficulties lie, and whether they reflect on-going difficulties with specific linguistic domains. It is also unclear whether the spelling profiles of these children vary in different orthographies. The present study compares the spelling profiles of monolingual children with DLD in France and England at the end of primary school. By contrasting these cohorts, we explored the linguistic constraints that affect spelling, beyond phono-graphemic transparency, in two opaque orthographies. Seventeen French and 17 English children with DLD were compared to typically developing children matched for age or spelling level. Participants wrote a 5 min sample of free writing and spelled 12 controlled dictated words. Spelling errors were analyzed to capture areas of difficulty in each language, in the phonological, morphological, orthographic and semantic domains. Overall, the nature of the errors produced by children with DLD is representative of their spelling level in both languages. However, areas of difficulty vary with the language and task, with more morphological errors in French than in English across both tasks and more orthographic errors in English than in French dictated words. The error types produced by children with DLD also differed in the two languages: segmentation and contraction errors were found in French, whilst morphological ending errors were found in English. It is hypothesized that these differences reflect the phonological salience of the units misspelled in both languages. The present study also provides a detailed breakdown of the spelling errors found in both languages for children with DLD and typical peers aged 5–11.
Adenosine A2A Receptor Mediates Inhibition of Synovitis and Osteoclastogenesis after Electroacupuncture in Rats with Collagen-Induced Arthritis

Background This study was to investigate the role of adenosine A2A receptors (A2AR) in inhibiting the effect of electroacupuncture (EA) on osteoclastogenesis in collagen-induced arthritis (CIA). Methods Wistar rats were divided into four groups: sham-control group, CIA-control group, CIA-EA group, and CIA-EA-SCH58261 (A2AR antagonist) group. We detected tumor necrosis factor-α (TNF-α), nuclear transcription factor-κB (NF-κB), receptor activator of NF-κB ligand (RANKL), protein kinase A (PKA), and extracellular regulatory protein kinase 1/2 (ERK1/2) in peripheral blood by ELISA. PKA, ERK1/2, and NF-κB in ankle joints were determined by western blotting. We evaluated the arthritis damage by histological examination and determined the number of osteoclasts by tartrate-resistant acid phosphatase (TRAP) staining. Results EA treatment downregulated the expression of TNF-α, RANKL, PKA, ERK1/2, and NF-κB in peripheral blood but increased the levels of PKA and ERK1/2 in ankle joints. Importantly, EA treatment reduced bone erosion as evidenced by the histological findings and inhibited osteoclastogenesis as revealed by TRAP staining. All these effects of the EA treatment were reversed by combining EA treatment with the A2AR antagonist SCH58261. Conclusion Our data suggest that EA treatment activated A2AR. The effects of the A2AR antagonist SCH58261 suggest that the inhibition of osteoclast formation, the inhibition of TNF-α, RANKL, and NF-κB expression, and the increase of ERK1/2 are all dependent on this EA-induced A2AR activation. It is therefore likely that these pathways with clearly defined roles in inflammation and bone erosion are at least partially involved in the mediation of the inhibition of synovitis and osteoclast formation induced by EA.
Bioinformatical dissection of fission yeast DNA replication origins

Replication origins in eukaryotes form a base for assembly of the pre-replication complex (pre-RC), thereby serving as an initiation site of DNA replication. Characteristics of replication origin vary among species. In fission yeast Schizosaccharomyces pombe, DNA of high AT content is a distinct feature of replication origins; however, it remains to be understood what the general molecular architecture of fission yeast origin is. Here, we performed ChIP-seq mapping of Orc4 and Mcm2, two representative components of the pre-RC, and described the characteristics of their binding sites. The analysis revealed that fission yeast efficient origins are associated with two similar but independent features: a ≥15 bp-long motif with stretches of As and an AT-rich region of a few hundred bp. The A-rich motif was correlated with chromosomal binding of Orc, a DNA-binding component in the pre-RC, whereas the AT-rich region was associated with efficient binding of the DNA replicative helicase Mcm. These two features, in combination with the third feature, a transcription-poor region of approximately 1 kb, enabled to distinguish efficient replication origins from the rest of chromosome arms with high accuracy. This study, hence, provides a model that describes how multiple functional elements specify DNA replication origins in fission yeast genome.
Prevalence of Caryospora (Apicomplexa: Eimeriidae) Oocysts in the Environment of a Gyrfalcon (Falco rusticolus) Breeding Center in the United Arab Emirates

Abstract: A total of 356 gyrfalcon (Falco rusticolus) fecal, fomite, and environmental samples were collected from a breeding center located in the United Arab Emirates to assess the prevalence of Caryospora species oocysts in the environment. These included 136 samples (38%) from fomites and fecal samples from chicks at 0 to 10 days old, 29 samples (8%) at 15 days old, 23 samples (6%) at 60 days old, 7 samples (2%) at 67 days old, and 24 samples (7%) at 70 days old. In addition, 105 samples (29%) were collected from the environment of 13 breeding chambers, and 32 samples (9%) from the environment of 17 juvenile falcons. The prevalence of Caryospora species oocysts in fomites and fecal samples from the chicks had negative results from 10 to 60 days old. However, at 67 and 70 days old, the prevalence increased to 71.42% (5 of 7) and 95.83% (23 of 24), respectively. The prevalence of Caryospora species in the environment of 13 pairs of falcons housed in 13 breeding chambers was 0.15 oocyst/m2 in the sand, whereas, in the environment of 17 juvenile falcons housed in the free-flying aviary, the prevalence was 0.00086 oocyst/m2 in the sand and 0.15 oocyst/L in contaminated water. These results indicate that oocysts of Caryospora species may be found in the environment and in areas of poor and substandard hygiene. Caryospora species is an important protozoon parasite affecting captive falcons maintained in breeding centers and those used for falconry in the Middle East.
Protecting wi-fi beacons from outsider forgeries

All Wi-Fi networks periodically broadcast beacons to announce their presence to nearby clients. These beacons contain various properties of the network, including dynamic information to manage the behavior of clients. We first show that an adversary can forge beacons to carry out various known as well as novel attacks. Motivated by these attacks, we propose a scheme to authenticate beacon frames that is efficient and has low bandwidth overhead. We evaluate the security properties of this scheme, and discuss its current implementation in Linux. By collaborating with industry partners, our scheme also got incorporated into the draft 802.11 standard, increasing the chance of it being implemented by vendors.
Metformin Synergistically Enhanced the Antitumor Activity of Celecoxib in Human Non-Small Cell Lung Cancer Cells

Celecoxib has potential as an effective antineoplastic agent, but it may exhibit side effects. Given the glucose-addicted properties of tumor cells, metformin is recognized for its inhibitory effect on oxidative phosphorylation. In the present study, we aimed to combine low dose of celecoxib with metformin to alleviate the side effects of nonsteroidal anti-inflammatory drugs (NSAIDs) and overcome potential drug resistance. We found that celecoxib combined with metformin obviously suppressed cell migration and proliferation and induced cell apoptosis. Most importantly, in vivo experiments revealed the superior antitumor efficacy of combination treatment with a low dosage of celecoxib (25 mg/kg/day) without apparent toxicity. Further study of the underlying mechanism revealed that the two drugs in combination caused ROS aggregation in NSCLC cells, leading to DNA double-strand breaks and increased expression of the tumor suppressor factor p53. Elevated p53 subsequently caused cell cycle arrest and cell proliferation inhibition. The presence of metformin also sensitized NSCLC cells to celecoxib-induced apoptosis by activating caspase-9, -8, -3, and -7, upregulating the pro-apoptotic proteins Bad and Bax, and downregulating the antiapoptotic proteins Bcl-xl and Bcl-2. Moreover, the superior anticancer effect of combined therapy was also due to suppression of Raf-MEK-ERK cascades and PI3K-AKT signaling, which is conducive to overcoming drug resistance. In addition, either celecoxib alone or in combination with metformin suppressed NSCLC cell migration and invasion by inhibiting FAK, N-cadherin, and matrix metalloproteinase-9 activities. Together, our study provided a rational combination strategy with a low dosage of celecoxib and metformin for preclinical cancer application.
High Pressure Sodium Irradiation and Infrared Radiation Accelerate Petunia Seedling Growth

The increase in photosyntheti c photon flux (PPF) and plant temperature associated with supplemental high pressure sodium (HPS) irradiation were investigated during Petunia x hybrids Villm. 'Red Flash' seedling develop- ment. Seedlings were treated for 14 days following emergence or 5 days after the first true leaf had expanded to 1 mm. Treatments consisted of continuous infrared (IR) radiation (Ambient + IR), ambient conditions with spill-over radiation from adjacent treatments (Ambient - IR), root zone heating to 19.5C (RZ Heat), continuous HPS irra- diation at 167 µmol·s -1. m -2 PPF (HPS + IR) or continuous HPS irradiation at 167 µmol -1 ·m -2 PPF filtered through a water bath to remove IR (HPS - IR). Linear regression of natural log-transformed fresh weights indicated that increasing ambient PPF 53% and elevating plant temperature 4.3C (HPS + IR) increased seedling relative growth rate (RGR) by 45% compared with the control (Ambient - IR). Elevating plant temperature with + IR by 4.8C without supplementing PPF (Ambient + IR) increased RGR by 31% but failed to increase fresh weight (FW) above controls and resulted in etiolated plants that were unsuitable for transplanting. Once plants were removed from supplemental treatment and returned to ambient conditions, RGR for all treatments was similar. The increased FW promoted by IR and HPS treatments was maintained for up to 7 days after treatment. Therefore, the increased seedling growth responses observed with HPS treatment were due primarily to an increase in RGR during HPS Accelerating early seedling growth results in increased dry weight (DW) accumulation throughout the development of the crop when compared with treatment at later stages of develop- ment. The stimulation of early seedling growth results in earlier flowering and increased yield (Krizek et al., 1968; Lawrence and Calvert, 1953). Begonia semperflorens L. exhibited accel- erated growth with the application of 27C supplemental root zone heating (Graper and Healy, 1987a). Treatment of Petunia with continuous 1000 fc (≈200 µmol·s -1 ·m -2 ) supplemental light, 7 days after sowing, using 400-W Lucalux (HPS) for 10 or 15 days, decreased days to flower by up to 18% compared with plants grown under natural short days (Carpenter and Carl- son, 1974). Petunia seedlings were transplantable 1 to 2 weeks earlier (Wolnick and Mastalerz, 1969) and seed geranium seed- lings up to 60 days earlier . (Armitage et al., 1978) when grown with supplemental fluorescent light.