Miracle-dz/UniFAR-FTUs huggingface dataset:
Mehlich 3 extractable nutrients as determined by near-infrared reflectance spectroscopy.

Near-infrared reflectance spectroscopy (NIRS) is a cost-effective and environmentally friendly technique of soil analysis that is particularly advantageous in intensive soil sampling and soil nutrient management as well. This study evaluated the potential of NIRS for predicting P, K, Ca, Mg, Cu, Zn, Mn, Fe, and Al extracted by Mehlich 3. We used 150 air-dried samples collected from a 15-ha site dominated by Orthic Humic Gleysol and Gleyed Dystric Brunisol soils. Calibration equations were developed using modified partial least squares regression. The accuracy of NIRS prediction was evaluated using the coefficient of determination (R2), the ratio of performance deviation (RPD), and the ratio of error range (RER). Reliable calibrations were found for Ca, Cu, and Mg (R2 ≥ 0.7, RPD ≥ 1.75, and RER ≥ 8). Less-reliable calibrations were found for Al, Fe, K, Mn, P, and Zn (R2 < 0.7, RPD < 1.75, and RER < 8). In the validation with independent samples, acceptable regression coefficients (i.e., 0.8 ≤ slope ≤ 1.2) .
Draft Genome Sequences of Thelohania contejeani and Cucumispora dikerogammari, Pathogenic Microsporidia of Freshwater Crustaceans

We announce the draft genome sequences of two pathogenic microsporidia of European freshwater crustaceans, Thelohania contejeani (the causative agent of porcelain disease) and Cucumispora dikerogammari. Both species are implicated in mass mortalities in natural populations of their crayfish and amphipod hosts, respectively. ABSTRACT We announce the draft genome sequences of two pathogenic microsporidia of European freshwater crustaceans, Thelohania contejeani (the causative agent of porcelain disease) and Cucumispora dikerogammari. Both species are implicated in mass mortalities in natural populations of their crayfish and amphipod hosts, respectively.
Complete Genome Sequence of Francisella sp. Strain LA11-2445 (FDC406), a Novel Francisella Species Isolated from a Human Skin Lesion

Here, we present the 2,139,666-bp circular chromosome of Francisella sp. strain LA11-2445 (FDC406), a proposed novel species of Francisella that was isolated from a human cutaneous lesion and is related to Francisella species from marine environments. ABSTRACT Here, we present the 2,139,666-bp circular chromosome of Francisella sp. strain LA11-2445 (FDC406), a proposed novel species of Francisella that was isolated from a human cutaneous lesion and is related to Francisella species from marine environments.
Topological pumping of a 1D dipolar gas into strongly correlated prethermal states

Making a quantum pump Most nonequilibrium, many-particle systems eventually reach a thermal state. However, some one-dimensional quantum systems do not thermalize, although they may settle into a long-term equilibrium state. Kao et al. studied such a system consisting of dipolar dysprosium atoms confined in an optical potential shaped like a two-dimensional array of elongated tubes. The authors cycled the contact interaction between the atoms in a prescribed way, creating increasingly excited nonthermal quantum many-body states. Science, this issue p. 296 Cycling the contact interaction between dipolar dysprosium atoms creates a series of excited nonthermal quantum states. Long-lived excited states of interacting quantum systems that retain quantum correlations and evade thermalization are of great fundamental interest. We create nonthermal states in a bosonic one-dimensional (1D) quantum gas of dysprosium by stabilizing a super-Tonks-Girardeau gas against collapse and thermalization with repulsive long-range dipolar interactions. Stiffness and energy-per-particle measurements show that the system is dynamically stable regardless of contact interaction strength. This enables us to cycle contact interactions from weakly to strongly repulsive, then strongly attractive, and finally weakly attractive. We show that this cycle is an energy-space topological pump (caused by a quantum holonomy). Iterating this cycle offers an unexplored topological pumping method to create a hierarchy of increasingly excited prethermal states.
Direct numerical and large-eddy simulation of trefoil knotted vortices

Abstract This paper investigates pre- and post-reconnection dynamics of an unperturbed trefoil knotted vortex for circulation-based Reynolds numbers $Re_\varGamma = 2\times 10^3$ and $6\times 10^3$ by means of direct numerical simulations based on an adaptive mesh refinement framework. Companion coherent-vorticity preserving large-eddy simulations are also carried out on a uniform Cartesian grid. The complete vortex structure and flow evolution are simulated, including reconnection and subsequent separation into a smaller and a larger vortex ring, and the resulting helicity dynamics. The self-advection velocity before reconnection is found to scale with inviscid parameters. The reconnection process, however, occurs earlier (and more rapidly) in the higher Reynolds number case due to higher induced velocities associated with a thinner vortex core. The vortex propagation velocities after reconnection and separation are also affected by viscous effects, more prominently for the smaller vortex ring; the larger one is shown to carry the bulk of the helicity and enstrophy after reconnection. The domain integrated, or total helicity, $H(t)$, does not significantly change up until reconnection, at which point it varies abruptly due to the rapid dissipation of helicity caused by super-helicity hotspots localized at the reconnection sites. The total helicity dissipation rate predicted by the large-eddy simulation agrees reasonably well with the direct numerical simulation results, with a significant contribution from the modelled subgrid-scale stresses. On the other hand, variations in the vortex centreline helicity, $H_C(t)$, and the vortex-tube-integrated helicity $H_V(t)$ are less sensitive to the reconnection process. Periodic vortex bursting events are also observed and are shown to be due to converging axial flow velocities in the detached vortex rings at later stages of evolution.
The effect of pressure fluctuations on the shapes of thinning liquid curtains

Abstract We consider the time-dependent response of a gravitationally thinning inviscid liquid sheet (a coating curtain) leaving a vertical slot to sinusoidal ambient pressure disturbances. The theoretical investigation employs the hyperbolic partial differential equation developed by Weinstein et al. (Phys. Fluids, vol. 9, issue 12, 1997, pp. 3625–3636). The response of the curtain is characterized by the slot Weber number, $W_{e_0} = \rho q V/2\sigma$, where $V$ is the speed of the curtain at the slot, $q$ is the volumetric flow rate per unit width, $\sigma$ is the surface tension and $\rho$ is the fluid density. Flow disturbances travel along characteristics with speeds relative to the curtain of $\pm \sqrt {uV/W_{e_0}}$, where $u = \sqrt {V^{2} + 2gx}$ is the curtain speed at a distance $x$ downstream from the slot. Here g is the acceleration of gravity. When the flow is subcritical ($W_{e_0} < 1$), upstream travelling disturbances near the slot affect the curtain centreline, and the slope of the curtain centreline at the slot oscillates with an amplitude that is a function of $W_{e_0}$. In contrast, all disturbances travel downstream in supercritical curtains ($W_{e_0} > 1$) and the slope of the curtain at the slot is vertical. Here, we specifically examine the curtain response under supercritical and subcritical flow conditions near $W_{e_0} = 1$ to deduce whether there is a substantial change in the overall shape and magnitude of the curtain responses. Despite the local differences in the curtain solution near the slot, we find that subcritical and supercritical curtains have similar responses for all imposed sinusoidal frequencies.
Aproveitamento da casca de citros na perspectiva de alimentos: prospecção da atividade antibacteriana

Citrus are the most produced fruits in the world. Brazil ranks first in global production and export of orange juice. The State of Rio Grande Do Sul is an important producer of citrus. During farming and processing of citrus, tons of residues are generated, with low commercial value and great potential for use in the field of food production. These residues possess many nutrients, pigments and bioactive compounds, as well as low toxicity and cost. There is evidence that the peel of citrus have antibacterial and antifungal activity. In this work, we aim to determine the antibacterial activity of ethanolic extracts of citrus peels in the perspective of disinfection and preservation of food, presenting sustainable and natural alternatives directed at consumers concerned with health. Ethanolic extracts of crude peel of ripe ponkan tangerine (Citrus reticulata Blanco), pomelo (Citrus maxima (Burm.) Merr. ) and rangpur lime (Citrus limonia Osbeck) were obtained from ecological family farms. Their antibacterial activities were evaluated regarding Minimal Inhibitory Concentration (MIC) and Minimal Bactericidal Concentration (MBC) against five different bacterial strains. The rangpur lime extract presented the best antibacterial activity, with about 24 mg.mL-1 MIC and 42 mg.mL-1 MBC for the most resistant strain. Pseudomonas aeruginosa was the most sensitive strain. All ethanolic extracts inhibited or inactivated all tested strains, indicating they could be used as natural alternatives in food disinfection and preservation.
In Silico Prediction of Molecular Volumes, Heat Capacities, and Temperature-Dependent Densities of Ionic Liquids

We present a fast and reliable general estimation of the heat capacity, Cp, and temperature-dependent density, ρ, of ionic liquids, based on a new in silico method to calculate the molecular volume, Vm. The knowledge of Vm allows the prediction of many physical properties of hitherto unknown ionic liquids as well as the prediction of lattice energies and entropies of salts.
Metagenomics-Based Approach to Source-Attribution of Antimicrobial Resistance Determinants – Identification of Reservoir Resistome Signatures

Metagenomics can unveil the genetic content of the total microbiota in different environments, such as food products and the guts of humans and livestock. It is therefore considered of great potential to investigate the transmission of foodborne hazards as part of source-attribution studies. Source-attribution of antimicrobial resistance (AMR) has traditionally relied on pathogen isolation, while metagenomics allows investigating the full span of AMR determinants. In this study, we hypothesized that the relative abundance of fecal resistome components can be associated with specific reservoirs, and that resistomes can be used for AMR source-attribution. We used shotgun-sequences from fecal samples of pigs, broilers, turkeys- and veal calves collected across Europe, and fecal samples from humans occupationally exposed to livestock in one country (pig slaughterhouse workers, pig and broiler farmers). We applied both hierarchical and flat forms of the supervised classification ensemble algorithm Random Forests to classify resistomes into corresponding reservoir classes. We identified country-specific and -independent AMR determinants, and assessed the impact of country-specific determinants when attributing AMR resistance in humans. Additionally, we performed a similarity percentage analysis with the full spectrum of AMR determinants to identify resistome signatures for the different reservoirs. We showed that the number of AMR determinants necessary to attribute a resistome into the correct reservoir increases with a larger reservoir heterogeneity, and that the impact of country-specific resistome signatures on prediction varies between countries. We predicted a higher occupational exposure to AMR determinants among workers exposed to pigs than among those exposed to broilers. Additionally, results suggested that AMR exposure on pig farms was higher than in pig slaughterhouses. Human resistomes were more similar to pig and veal calves’ resistomes than to those of broilers and turkeys, and the majority of these resistome dissimilarities can be explained by a small set of AMR determinants. We identified resistome signatures for each individual reservoir, which include AMR determinants significantly associated with on-farm antimicrobial use. We attributed human resistomes to different livestock reservoirs using Random Forests, which allowed identifying pigs as a potential source of AMR in humans. This study thus demonstrates that it is possible to apply metagenomics in AMR source-attribution.
Scarred Lung. An Update on Radiation-Induced Pulmonary Fibrosis

Radiation-induced pulmonary fibrosis is a common severe long-time complication of radiation therapy for tumors of the thorax. Current therapeutic options used in the clinic include only supportive managements strategies, such as anti-inflammatory treatment using steroids, their efficacy, however, is far from being satisfactory. Recent studies have demonstrated that the development of lung fibrosis is a dynamic and complex process, involving the release of reactive oxygen species, activation of Toll-like receptors, recruitment of inflammatory cells, excessive production of nitric oxide and production of collagen by activated myofibroblasts. In this review we summarized the current state of knowledge on the pathophysiological processes leading to the development of lung fibrosis and we also discussed the possible treatment options.
Panax quinquefolius L. Saponins Protect Myocardial Ischemia Reperfusion No-Reflow Through Inhibiting the Activation of NLRP3 Inflammasome via TLR4/MyD88/NF-κB Signaling Pathway

At present, many patients who undergo reperfusion immediately after percutaneous coronary intervention will undergo microvascular obstruction and reduction in myocardial blood flow. This phenomenon is called “no-reflow (NR),” and there is still no effective therapy for NR. Studies showed Panax quinquefolius L. saponins (PQS) have effect on MI/R injury, while the effect and mechanism of PQS on MI/R induced NR are not clear. In this study, we established a MI/R model to investigate whether PQS decrease NR phenomenon via suppression of inflammation. We found that PQS significantly alleviated the symptoms of NR by reducing ischemia, infarction, and NR area; improving cardiac function; preventing pathological morphology changes of myocardium; depressing leukocytes’ aggregation and adhesion; and suppressing the excessive inflammation. Further study demonstrated that PQS remarkably inhibited TLR4, MyD88, p-NF-κB, and NLRP3 inflammasome-associated protein, and these effects could be reversed by LPS. These results indicated that PQS may protect NR by inhibiting the activation of NLRP3 inflammasome via TLR4/MyD88/NF-κB signaling pathway in part, suggesting that PQS exist potential in preventing NR induced by MI/R.
The Molecular Mechanism of Chronic High-Dose Corticosterone-Induced Aggravation of Cognitive Impairment in APP/PS1 Transgenic Mice

Clinical studies have found that some Alzheimer’s disease (AD) patients suffer from Cushing’s syndrome (CS). CS is caused by the long-term release of excess glucocorticoids (GCs) from the adrenal gland, which in turn, impair brain function and induce dementia. Thus, we investigated the mechanism of the effect of corticosterone (CORT) on the development and progression of AD in a preclinical model. Specifically, the plasma CORT levels of 9-month-old APP/PS1 Tg mice were abnormally increased, suggesting an association between GCs and AD. Long-term administration of CORT accelerated cognitive dysfunction by increasing the production and deposition of β-amyloid (Aβ). The mechanism of action of CORT treatment involved stimulation of the expression of BACE-1 and presenilin (PS) 1 in in vitro and in vivo. This observation was confirmed in mice with adrenalectomy (ADX), which had lower levels of GCs. Moreover, the glucocorticoid receptor (GR) mediated the effects of CORT on the stimulation of the expression of BACE-1 and PS1 via the PKA and CREB pathways in neuroblastoma N2a cells. In addition to these mechanisms, CORT can induce a cognitive decline in APP/PS1 Tg mice by inducing apoptosis and decreasing the differentiation of neurons.
Pandemics Throughout History

The emergence and spread of infectious diseases with pandemic potential occurred regularly throughout history. Major pandemics and epidemics such as plague, cholera, flu, severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV) have already afflicted humanity. The world is now facing the new coronavirus disease 2019 (COVID-19) pandemic. Many infectious diseases leading to pandemics are caused by zoonotic pathogens that were transmitted to humans due to increased contacts with animals through breeding, hunting and global trade activities. The understanding of the mechanisms of transmission of pathogens to humans allowed the establishment of methods to prevent and control infections. During centuries, implementation of public health measures such as isolation, quarantine and border control helped to contain the spread of infectious diseases and maintain the structure of the society. In the absence of pharmaceutical interventions, these containment methods have still been used nowadays to control COVID-19 pandemic. Global surveillance programs of water-borne pathogens, vector-borne diseases and zoonotic spillovers at the animal-human interface are of prime importance to rapidly detect the emergence of infectious threats. Novel technologies for rapid diagnostic testing, contact tracing, drug repurposing, biomarkers of disease severity as well as new platforms for the development and production of vaccines are needed for an effective response in case of pandemics.
Association Between Vitamin D and Resistin in Postmenopausal Females With Altered Bone Health

Background Resistin is a relatively novel adipokine that has a role in bone remodeling and may regulate bone mineral density (BMD). Vitamin D and adipokines have a dynamic role in the body’s various metabolic processes, including bone metabolism, and may alter bone metabolism in relation to each other. This study aimed to investigate the association between vitamin D and serum resistin levels in postmenopausal non-osteoporotic and osteoporotic females. Methods This correlational analytical study was conducted on 161 postmenopausal females, divided into two groups, non-osteoporotic and osteoporotic, between 50–70 years. Bone mineral density (BMD) was assessed by dual-energy X-ray absorptiometry (DXA) scan. Serum resistin and vitamin D levels were analyzed by enzyme-linked immunosorbent assay (ELISA) method. Serum calcium, phosphate, and alkaline phosphatase with spectrophotometry. A correlation was checked using spearman’s rho correlation coefficient, and multivariate stepwise regression analysis was used to predict serum resistin levels. Results Postmenopausal females (n=161) having sufficient, insufficient and deficient levels of vitamin D were 87 (54.0%), 64 (39.8%), and 10 (6.2%), respectively. Lumbar spine BMD (p < 0.001), total hip BMD (p < 0.001), and serum resistin levels (p < 0.001) were significantly different between the two groups. There was a significant negative correlation between serum resistin and vitamin D in postmenopausal females (rho = -0.182, p = 0.021) and osteoporotic group (rho = -0.253, p = 0.019) but non-significant in non-osteoporotic group (rho = -0.077, p = 0.509). Serum vitamin D was found to be independent predictor of serum resistin levels, accounting for only 3% variance. Conclusion Serum vitamin D levels were low while serum resistin levels were high in postmenopausal osteoporotic females and vitamin D is a negative predictor of serum resistin levels.
Environmentally friendly refining: Fischer–Tropsch versus crude oil

Projected changes in crude oil refinery design to meet future fuel specifications require that intermediates are produced that are already present in Fischer–Tropsch syncrude. A qualitative comparison is made between syncrude and crude oil, and the refinery designs needed to convert these raw materials into transportation fuels. Syncrude is sulfur free, nitrogen free and contains no heteroatom rich residues, making its purification and separation less complex than that of crude oil. The conversion units needed to produce motor-gasoline, jet fuel and diesel from syncrude are of similar complexity to that of crude oil, but crude oil residue conversion is much more involved. Furthermore, cleaner conversion technologies can be used to upgrade syncrude. A Fischer–Tropsch refinery consequently has a smaller environmental footprint than a crude oil refinery.
The Roles of Psychological Capital and Gender in University Students’ Entrepreneurial Intentions

Universities increasingly play an important role in entrepreneurship, which has contributed to gender equality in the business world. The aim of this study is to establish a causal model of entrepreneurial intentions and explore it by gender, based on the dimensions of the Theory of Planned Behavior, and how these are mediated by the individuals’ resilience and psychological well-being. The previous work experience was considered as one of the control variables, in order to analyze whether this influence the entrepreneurial intention. With a convenience sample of 644 Portuguese students, Structural Equation Modeling (SEM) was used. For a better understanding, multivariate analyses were performed and each one was individually reported, and for appropriate comparisons by gender, the t-student test was used. The comparison of means, between genders, showed that there are differences only between perceived behavioral control, subjective norm, and entrepreneurial intention, with women scoring the highest values, and psychological well-being, with men scoring the higher. A serial mediation path was performed, and psychological resilience was found to mediate a significant effect between perceived behavioral control and intention in females, but not in males. It also mediates a significant effect between attitude and intention in females, but not in males. These results show that attitude is a determining factor for females to become entrepreneurs. Finally, after discussing the results, theoretical and practical contributions are analyzed, with regard to the field of entrepreneurship in Portugal, and alternatives are pointed out for a more entrepreneurial future, reinforcing the role of higher education institutions.