Miracle-dz/UniFAR-FTUs huggingface dataset:
Laboratory Intercomparison of the Cytokinesis-Block Micronucleus Assay

The focus of the study is an intercomparison of laboratories' dose-assessment performances using the cytokinesis-block micronucleus (CBMN) assay as a diagnostic triage tool for individual radiation dose assessment. Homogenously X-irradiated (240 kVp, 1 Gy/min) blood samples for establishing calibration data (0.25–5 Gy) as well as blind samples (0.1–6.4 Gy) were sent to the participants. The CBMN assay was performed according to protocols individually established and varying among participating laboratories. The time taken to report dose estimates was documented for each laboratory. Additional information concerning laboratory organization/characteristics as well as assay performance was collected. The mean absolute difference (MAD) was calculated and radiation doses were merged into four triage categories reflecting clinical aspects to calculate accuracy, sensitivity and specificity. The earliest report time was 4 days after sample arrival. The CBMN dose estimates were reported with high accuracy (MAD values of 0.20–0.50 Gy at doses below 6.4 Gy for both manual and automated scoring procedures), but showed a limitation of the assay at the dose point of 6.4 Gy, which resulted in a clear dose underestimation in all cases. The MAD values (without 6.4 Gy) differed significantly (P = 0.03) between manual (0.25 Gy, SEM = 0.06, n = 4) or automated scoring procedures (0.37 Gy, SEM = 0.08, n = 5), but lowest MAD were equal (0.2 Gy) for both scoring procedures. Likewise, both scoring procedures led to the same allocation of dose estimates to triage categories of clinical significance (about 83% accuracy and up to 100% specificity).
IGF‐I and IGFBP‐3 polymorphisms and risk of prostate cancer

Insulin‐like growth factor‐I (IGF‐I) is a potent mitogen for both normal and malignant prostate epithelial cells. The majority of circulating IGF‐I is bound in a complex with IGF binding protein‐3 (IGFBP‐3), which in turn limits IGF‐I bioavailability. Multiple studies suggest that higher IGF‐I and/or lower IGFBP‐3 serum levels are positively associated with prostate cancer risk. Several polymorphisms within the IGF‐I and IGFBP‐3 coding regions have been associated with increased serum protein levels.
Involvement of 5HT3 Receptors in Anti-Inflammatory Effects of Tropisetron on Experimental TNBS-Induced Colitis in Rat.

INTRODUCTION There is a pressing need for research leading to the development of new effective drugs with lower side effects and more efficacy for treating inflammatory bowel disease (IBD). The analgesic and anti-inflammatory properties of 5-Hydroxytryptamine (5-HT)-3 receptor antagonists have been shown in in vivo and in vitro studies. The present study was designed to investigate the effects of tropisetron, a 5-HT3 receptor antagonist, on an immune-based animal model of IBD. METHODS In the present study, the trinitrobenzenesulfonic acid (TNBS) model of colitis in the rat was used. Two hours after induction of colitis in rats, tropisetron (2 mg/kg), dexamethasone (1 mg/kg), meta-chlorophenylbiguanide (mCPBG, 5 mg/kg), a 5-HT3 receptor agonist, or tropisetron + mCPBG were intraperitoneally (i.p.) administrated for 6 days. Animals were then sacrificed; macroscopic, histological, biochemical (myeloperoxidase [MPO]) assessments and ELISA test (tumor necrosis factor-alpha, interleukin-6 and interleukin-1 beta) were performed on distal colon samples. RESULTS Tropisetron or dexamethasone treatment significantly reduced macroscopic and microscopic colonic damages. In addition, a significant reduction in MPO activity and colonic levels of inflammatory cytokines was seen. The beneficial effects of tropisetron were antagonized by concurrent administration of mCPBG. CONCLUSION The present study indicates that the protective effects of tropisetron on TNBS-induced colitis can be mediated by 5-HT3 receptors.
The Role of Functional Dopamine-Transporter SPECT Imaging in Parkinsonian Syndromes, Part 2

SUMMARY: The functional imaging technique most widely used in European clinics to differentiate a true parkinsonian syndrome from vascular parkinsonism, drug-induced changes, or essential tremor is dopamine-transporter SPECT. This technique commonly reports dopamine-transporter function, with decreasing striatal uptake demonstrating increasingly severe disease. The strength of dopamine-transporter SPECT is that nigrostriatal degeneration is observed in both clinically inconclusive parkinsonism and early, even premotor, disease. In this clinical review (Part 2), we present the dopamine-transporter SPECT findings in a variety of neurodegenerative diseases, including multiple system atrophy, progressive supranuclear palsy, corticobasal degeneration, and dementia with Lewy bodies. The findings in vascular parkinsonism, drug-induced parkinsonism, and essential tremor are also described. It is hoped that this technique will be the forerunner of a range of routinely used, process-specific ligands that can identify early degenerative disease and subsequently guide disease-modifying interventions.
Comparison of Stool Antigen Detection Kits to PCR for Diagnosis of Amebiasis

ABSTRACT The present study was conducted to compare two stool antigen detection kits with PCR for the diagnosis of Entamoeba histolytica infections by using fecal specimens submitted to the Department of Microbiology at St. Vincent's Hospital, Sydney, and the Institute of Medical and Veterinary Science, Adelaide, Australia. A total of 279 stool samples containing the E complex (E. histolytica, Entamoeba dispar, and Entamoeba moshkovskii) were included in this study. The stool specimens were tested by using two commercially produced enzyme immunoassays (the Entamoeba CELISA PATH and TechLab E. histolytica II kits) to detect antigens of E. histolytica. DNA was extracted from all of the samples with a Qiagen DNA stool mini kit (Qiagen, Hilden, Germany), and a PCR targeting the small-subunit ribosomal DNA was performed on all of the samples. When PCR was used as a reference standard, the CELISA PATH kit showed 28% sensitivity and 100% specificity. The TechLab ELISA (enzyme-linked immunosorbent assay) kit did not prove to be useful in detecting E. histolytica, as it failed to identify any of the E. histolytica samples which were positive by PCR. With the TechLab kit, cross-reactivity was observed for three specimens, one of which was positive for both E. dispar and E. moshkovskii while the other two samples contained E. moshkovskii. Quantitative assessment of the PCR and ELISA results obtained showed that the ELISA kits were 1,000 to 10,000 times less sensitive, and our results show that the CELISA PATH kit and the TechLab ELISA are not useful for the detection of E. histolytica in stool samples from patients in geographical regions where this parasite is not endemic.
Forensics analysis of Wi-Fi communication traces in mobile devices

Smart mobile devices have become an essential part of our lives, both professionally and privately. As we expand our digital presence and usage of these devices, we also increase the amount of evidence left behind. Locard's principle states that every contact leaves a trace, a principle applicable not only to traditional crime but also the cyber realm. This project addresses an area in which this principle is applied, in terms of wireless networks and their access points that have been identified through the wireless scanning process. Both access points and smart devices use different, yet similar, network frames to advertise their existence before a connection can be established between two devices. These frames contain the data that this project aims to locate, MAC addresses, which are uniquely identifiable data, that can be used to identify any device that holds a wireless interface. By analysing the mobile device of a user after a short, city centre walk, the MAC addresses of nearby wireless access points were identified and used to retrace the route travelled by the user. However, as the information was only found in volatile memory, there was a limited timeframe to capture this data.
Neuropsychological Testing Predicts Cerebrospinal Fluid Amyloid-β in Mild Cognitive Impairment.

BACKGROUND Psychometric tests predict conversion of mild cognitive impairment (MCI) to probable Alzheimer's disease (AD). Because the definition of clinical AD relies on those same psychometric tests, the ability of these tests to identify underlying AD pathology remains unclear. OBJECTIVE To determine the degree to which psychometric testing predicts molecular evidence of AD amyloid pathology, as indicated by cerebrospinal fluid (CSF) amyloid-β (Aβ)1 - 42, in patients with MCI, as compared to neuroimaging biomarkers. METHODS We identified 408 MCI subjects with CSF Aβ levels, psychometric test data, FDG-PET scans, and acceptable volumetric MR scans from the Alzheimer's Disease Neuroimaging Initiative (ADNI). We used psychometric tests and imaging biomarkers in univariate and multivariate models to predict Aβ status. RESULTS The 30-min delayed recall score of the Rey Auditory Verbal Learning Test was the best predictor of Aβ status among the psychometric tests, achieving an AUC of 0.67 ± 0.02 and odds ratio of 2.5 ± 0.4. FDG-PET was the best imaging-based biomarker (AUC 0.67 ± 0.03, OR 3.2 ± 1.2), followed by hippocampal volume (AUC 0.64 ± 0.02, OR 2.4 ± 0.3). A multivariate analysis based on the psychometric tests improved on the univariate predictors, achieving an AUC of 0.68 ± 0.03 (OR 3.38 ± 1.2). Adding imaging biomarkers to the multivariate analysis did not improve the AUC. CONCLUSION Psychometric tests perform as well as imaging biomarkers to predict presence of molecular markers of AD pathology in MCI patients and should be considered in the determination of the likelihood that MCI is due to AD.
FcRn in the Yolk Sac Endoderm of Mouse Is Required for IgG Transport to Fetus1

In adults, the nonclassical MHC class I molecule, FcRn, binds both IgG and albumin and rescues both from a degradative fate, endowing both proteins with high plasma concentrations. FcRn also transports IgG from mother to young during gestation. Anticipating that a detailed understanding of gestational IgG transport in the mouse may give us a useful model to understand FcRn function in the human placenta, we have studied FcRn in the mouse yolk sac placenta in detail. Analyzing day 19–20 fetuses of the three FcRn genotypes resulting from matings of FcRn+/− parents, we found that FcRn−/− fetuses showed negligible IgG concentrations (1.5 μg/ml), whereas IgG concentrations in FcRn+/− fetuses were about a half (176 μg/ml) that of FcRn+/+ fetuses (336 μg/ml), indicating that FcRn is responsible for virtually all IgG transport from mother to fetus. Immunofluorescence and immunoblotting studies indicated that FcRn is expressed in the endoderm of the yolk sac placenta but not in other cells of the yolk sac placenta or in the chorioallantoic placenta. IgG was found in the endoderm of both FcRn+/+ and FcRn−/− yolk sac placentas and in the mesenchyme of FcRn+/+ but was missing from the mesenchyme of FcRn−/− yolk sac placentas, indicating that IgG enters the endoderm constitutively but is moved out of the endoderm by FcRn. The similarities of these results to human placental FcRn expression and function are striking.
Protection by Food-derived Antioxidants from UV-A1–Induced Photodamage, Measured Using Living Skin Equivalents¶

Abstract In a study of biomarkers of ultraviolet-A1 radiation (UV-A1)-induced skin damage, living skin equivalent cultures (LSE) were treated with the antioxidants hesperetin and quercetin-3-glucoside and irradiated with 25 or 50 J/cm2 UV-A1. Changes in the following biomarkers were measured; Interleukin 1-alpha (IL-1α), Heme Oxygenase-1 (HO-1), TdT-mediated dUTP nick end labeling (TUNEL) and 8-hydroxy-2′-deoxyguanosine (8-OHdG). IL-1α and HO-1 were analyzed by real-time PCR, Western blot, enzyme-linked immunosorbent assay (ELISA) and immunohistochemistry. TUNEL and 8-OHdG were determined by (immuno)histochemical techniques. Sections were stained with hematoxylin and eosin (H&E). UV-A1 induced keratinocyte and fibroblast vacuolation and nuclear pyknosis, intense TUNEL staining of fibroblasts and increased staining of cells and nuclei for 8-OHdG. Lesser or marginal increases in intensity followed staining for HO-1 and IL-1α. The IL-1α increase was confirmed by ELISA assays of the medium supernatants. Hesperetin and quercetin-3-glucoside reduced changes in H&E, 8-OHdG, TUNEL and IL-1α. Quercetin-3-glucoside reduced the amount of IL-1α in LSE media. These observations support the use of the selected biomarkers to monitor UV-A1 damage and provide evidence that dietary ingredients could reduce ultraviolet-A radiation-induced damage.
Title : Adult body size and physical activity in relation to risk of breast cancer according to tumor androgen receptor status Running title : obesity , exercise and breast cancer by androgen receptor

Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA Department of Epidemiology, Harvard School of Public Health, Boston, MA Department of Pathology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA Department of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA Division of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts, MA
Organization of the mossy fiber system of the rat studied in extended hippocampi. I. Terminal area related to number of granule and pyramidal cells

A quantitative and qualitative study of the septotemporal organization of the hippocampal mossy fiber system has been carried out in the rat. Transverse sections of isolated and extended hippocampi were stained according to Nisel's or Timm's method. At 12 equidistant levels covering the entire length of the hippocampus the following parameters were measured: the length of the granule cell layer and the mossy fiber layer, the area of the fields containing mossy fiber boutons, the number of granule cells, and the number of pyramidal cells in the hilus and in the regio inferior.
Antisocial Personality Disorder and depression in relation to alcoholism: a community-based sample.

OBJECTIVE Antisocial Personality Disorder (ASPD) and depression frequently co-occur with alcoholism. This study examined the relationship between the presence of ASPD or depression and the course and severity of alcoholism. METHOD Alcoholic men (n = 207), recruited from a community-based sample, the Minnesota Twin-Family Study (MTFS), were categorized according to comorbid diagnoses into the following four groups: alcoholics with ASPD (n = 25), alcoholics with depression (n = 24), alcoholics with neither ASPD nor depression, but who were allowed to have additional psychopathology (n = 130) and alcoholics with no other psychiatric diagnoses (n = 28). The four diagnostic subgroups were compared on alcohol and drug use, alcohol-related problems and personality dimensions. RESULTS ASPD was associated with an earlier age of first intoxication, a more chronic and severe course of alcoholism, more social consequences of drinking and higher levels of drug use. On the whole, depression was associated with a less severe course of alcoholism. Alcoholics with depression and alcoholics with ASPD had higher negative emotionality, and alcoholics with ASPD had lower constraint scores on the Multidimensional Personality Questionnaire. CONCLUSIONS These findings, derived from a community-based sample, indicate the importance of assessing comorbidity among alcoholics and confirm the association of ASPD with a more severe and chronic course of alcoholism and with higher likelihood of drug abuse.
The correlation between the SOS in trabecular bone and stiffness and density studied by finite-element analysis

For the clinical assessment of osteoporosis (i.e., a degenerative bone disease associated with increased fracture risk), ultrasound has been proposed as an alternative or supplement to the dual-energy X-ray absorptiometry (DEXA) technique. However, the interaction of ultrasound waves with (trabecular) bone remains relatively poorly understood. The present study aimed to improve this understanding by simulating ultrasound wave propagation in 15 trabecular bone samples from the human lumbar spine, using microcomputed tomography-based finite-element modeling. The model included only the solid bone, without the bone marrow. Two structural parameters were calculated: the bone volume fraction (BV/TV) and the structural (apparent) elastic modulus (Es), and the ultrasound propagation parameter speed of sound (SOS). Relations between BV/TV and Es were similar to published experimental relations. At 1 MHz, correlations between SOS and the structural parameters BV/TV and Es were rather weak, but the results can be explained from the specific features of the trabecular structure and the intrinsic material elastic modulus Ei. In particular, the systematic differences between the three main directions provide information on the trabecular structure. In addition, at 1 MHz the correlation found between the simulated SOS values and those calculated from the simple bar equation was poor when the three directions are considered separately. Hence, under these conditions, the homogenization approach - including the bar equation - is not valid. However, at lower frequencies (50-300 kHz) this correlation significantly improved. It is concluded that detailed analysis of ultrasound wave propagation through the solid structure in various directions and with various frequencies, can yield much information on the structural and mechanical properties of trabecular bone.
Polyamine Metabolism Is Altered in Unpollinated Parthenocarpicpat-2 Tomato Ovaries1

Facultative parthenocarpy induced by the recessive mutationpat-2 in tomato (Lycopersicon esculentum Mill.) depends on gibberellins (GAs) and is associated with changes in GA content in unpollinated ovaries. Polyamines (PAs) have also been proposed to play a role in early tomato fruit development. We therefore investigated whether PAs are able to induce parthenocarpy and whether thepat-2 mutation alters the content and metabolism of PAs in unpollinated ovaries. Application of putrescine, spermidine, and spermine to wild-type unpollinated tomato ovaries (cv Madrigal [MA/wt]) induced partial parthenocarpy. Parthenocarpic growth of MA/pat-2 (a parthenocarpic near-isogenic line to MA/wt) ovaries was negated by paclobutrazol (GA biosynthesis inhibitor), and this inhibition was counteracted by spermidine. Application of α-difluoromethyl-ornithine (-Orn) and/or α-difluoromethyl-arginine (-Arg), irreversible inhibitors of the putrescine biosynthesis enzymes Orn decarboxylase (ODC) and Arg decarboxylase, respectively, prevented growth of unpollinated MA/pat-2 ovaries. α-Difluoromethyl-Arg inhibition was counteracted by putrescine and GA3, whereas that of α-difluoromethyl-Orn was counteracted by GA3 but not by putrescine or spermidine. In unpollinated MA/pat-2 ovaries, the content of free spermine was significantly higher than in MA/wt ovaries. ODC activity was higher in pat-2 ovaries than in MA/wt. Transcript levels of genes encoding ODC and spermidine synthase were also higher in MA/pat-2. All together, these results strongly suggest that the parthenocarpic ability of pat-2 mutants depends on elevated PAs levels in unpollinated mutant ovaries, which correlate with an activation of the ODC pathway, probably as a consequence of elevated GA content in unpollinated pat-2tomato ovaries.
Reconstructing an Adaptationist Scenario: What Selective Forces Favor the Evolution of Viviparity in Montane Reptiles?

It is notoriously difficult to test hypotheses about the selective forces responsible for major phylogenetic transitions in life‐history traits, but the evolution of viviparity (live bearing) in reptiles offers an ideal model system. Viviparity has arisen in many oviparous reptile lineages that have invaded colder climates. Thermal advantages (eggs retained within the mother's body will be warmer than those laid in the nest) are almost certainly important, but the actual selective pressures remain controversial. For example, the benefit to retention might involve faster development, protection against freezing, predation, or desiccation, or modification of hatchling phenotypes. I experimentally manipulated incubation regimes of a montane scincid lizard (Bassiana duperreyi, Scincidae) to test these ideas. Eggs maintained in cooler “nests” in the laboratory developed more slowly, were more likely to die before hatching, and produced inferior (small, slow) hatchlings. A 2‐wk initial period of higher‐temperature incubation (simulating uterine retention, an intermediate step toward viviparity) ameliorated these effects. In the field, I placed eggs in artificial nests at the upper elevational limit of natural nests and also extending a further 100 m higher on the mountain. The results mirrored those in the laboratory: retention at maternal body temperatures accelerated hatching, enhanced hatching success, and increased locomotor speeds of hatchlings. This selective advantage of uterine retention was greater at higher elevations and increased with longer retention. The causal process responsible was prolonged low‐temperature incubation rather than freezing, desiccation, or predation, and both hatching success and hatchling viability were affected. Field experiments that directly re‐create selective regimes may thus provide robust tests of adaptationist hypotheses.
Steering for beacon pursuit under limited sensing

In this paper we investigate a model of two agents (self-steering particles) engaged in a dyadic interaction, with one pursuing the other using a constant bearing strategy. The pursued agent is controlled independently. Analysis of this interaction shows that the dynamics on the joint state space of the two agents restricts to an invariant manifold in shape space, and shares certain features in common with the Kepler problem. This model is applied to the task of tracking a stationary beacon with the practical constraint of using a sensor with a limited field of view (FOV). An effective solution to this problem is derived using the preceding analysis, and demonstrated in a laboratory implementation on a robot equipped with a Kinect vision sensor. Essential to this solution is the augmentation of the pursuit strategy (and associated feedback law) by an odometry-driven estimator when the beacon falls outside of the FOV.