Miracle-dz/UniFAR-FTUs huggingface dataset:
Long‐term climate impacts on breeding bird phenology in Pennsylvania, USA

Climate change is influencing bird phenology worldwide, but we still lack information on how many species are responding over long temporal periods. We assessed how climate affected passerine reproductive timing and productivity at a constant effort mist‐netting station in western Pennsylvania using a model comparison approach. Several lines of evidence point to the sensitivity of 21 breeding passerines to climate change over five decades. The trends for temperature and precipitation over 53 years were slightly positive due to intraseasonal variation, with the greatest temperature increases and precipitation declines in early spring. Regardless of broodedness, migration distance, or breeding season, 13 species hatched young earlier over time with most advancing >3 days per decade. Warm springs were associated with earlier captures of juveniles for 14 species, ranging from 1‐ to 3‐day advancement for every 1 °C increase. This timing was less likely to be influenced by spring precipitation; nevertheless, higher rainfall was usually associated with later appearance of juveniles and breeding condition in females. Temperature and precipitation were positively related to productivity for seven and eleven species, respectively, with negative relations evident for six and eight species. We found that birds fledged young earlier with increasing spring temperatures, potentially benefiting some multibrooded species. Indeed, some extended the duration of breeding in these warm years. Yet, a few species fledged fewer juveniles in warmer and wetter seasons, indicating that expected future increases could be detrimental to locally breeding populations. Although there were no clear relationships between life history traits and breeding phenology, species‐specific responses to climate found in our study provide novel insights into phenological flexibility in songbirds. Our research underscores the value of long‐term monitoring studies and the importance of continuing constant effort sampling in the face of climate change.
Determinants of loan repayment performance among women self help groups in Bayelsa State, Nigeria.

Summary Th is paper investigated the determinants of loan repayment performance among women self-help groups in Bayelsa State, Nigeria. A structured questionnaire was used to gather information from one hundred and twelve (112) women farmers from eight communities within the States, using the multistage sampling technique. Th e study revealed that credit was available for agricultural production, processing and petty trading among women farmers. Th e mean amount of loan disbursed to farmers was N18,147.3 while the mean amount of N15,000 was repaid. Loan repayment percentage was determined to be 83.73% while percentage default was 17.27%. Th e estimated regression model indicated that women as household heads (X 2 ), interest rate (X 3 ) and household size (X 4 ), negatively and signifi cantly aff ected the loan repayment performance of women farmers while price stability of farm proceeds (X 5 ) and commitment to self help groups (X6), positively and signifi cantly aff ected the loan repayment of women farmers in self help groups in the area. It was therefore recommended that more self help credit/saving groups be established in the state and that fi nancial institutions within the state should form a linkage with this groups for effi cient loan scheme.
Increased risk of herpes zoster in patients with coeliac disease – nationwide cohort study

Background and aims: Clinical experience suggests that patients with coeliac disease (CD) are more prone to develop herpes zoster (HZ), but robust studies are lacking. Methods: We identified 29,064 patients with CD 1969−2008 using biopsy report data from Sweden’s 28 pathology departments. CD was equalled to villous atrophy (Marsh histopathology grade III). Each patient was matched on age, sex, calendar year and county of residence to up to five reference individuals (n=144,342) from the general population. We then used Cox regression to estimate hazard ratios (HRs) for future HZ (defined as having a hospital-based inpatient or outpatient record of this diagnosis in the Swedish Patient Register). Results: During follow-up, 154 (0.53%) individuals with CD and 499 (0.35%) reference individuals developed HZ. Among individuals aged ≥60 years, 1.06% of CD individuals and 0.85% of reference individuals had a lifetime record of HZ. Overall, CD was associated with a 1.62-fold increased risk of HZ (95% CI=1.35−1.95), and was seen also when we considered comorbidity with lymphoproliferative disease, systemic lupus erythematosus, type 1 diabetes, thyroid disease, rheumatoid disease and excluded individuals with a record of dermatitis herpetiformis. The increased risk remained significant after more than five years of follow-up (1.46; 1.16−1.84) Conclusions: CD is associated with HZ, the increased relative risk persists over time from celiac diagnosis but the absolute risk is small.
Genetic and population studies of the blood types and serum factors among Indians and Chinese from Malaya.

WHILE THE PATTERN OF INHERTANCE and the distribution of the blood types among the various populations of the world are well known (Race and Sanger, 1958; Mourant, 1954; Mourant, Kopec, and Domaniewska-Sobezak, 1958), neither the pattern of inheritance nor the distribution of the serum factors (Gm, Hp, and Tf) is clearly understood. Thus, there is considerable uncertainty with regard to the pattern of inheritance of the Gm and Hp groups in different populations (Steinberg, Stauffer, Blumberg, and Fudenberg, 1961; Giblett and Steinberg, 1960; also others) and little population data for each of the three serum factors are available. We have studied the families of Chinese and Indians in Malaya in the hope of contributing useful information concerning the serum factors. The blood types were studied primarily to detect extra-marital offspring. Families with only Indian or Chinese ancestry were selected.
THE MASS OF THE WHITE DWARF IN GW LIBRA

We report a mass and rotational broadening (vsin i) for the pulsating white dwarf (WD) component of the WZ Sge type Dwarf Nova GW Lib based on high-resolution Very Large Telescope spectroscopy that resolves the Mg ii 4481 Å absorption feature. Its gravitational redshift combined with WD mass–radius models provides us with a direct measurement of the WD mass of M1 = 0.84 ± 0.02 M☉. The line is clearly resolved and if associated with rotational broadening gives vsin i = 87.0 ± 3.4 km s−1, equivalent to a spin period of 97 ± 12 s.
Resveratrol and Adipose-derived Mesenchymal Stem Cells Are Effective in the Prevention and Treatment of Doxorubicin Cardiotoxicity in Rats

Anthracyclines can cause severe cardiac toxicity leading to heart failure. The aim of this study was to determine the effects of cardioprotective polyphenolic compound resveratrol (RES) and adipose-derived mesenchymal stem cells (ADMSCs) on cardiac tissue of rats treated with doxorubicin (DOX). Forty-two female and three male Wistar–Albino rats were included in the study. The study groups and the control groups were as follows: Group I: DOX; Group II: DOX + RES; Group III: DOX + ADMSCs; Group IV: DOX + RES + ADMSCs; Group V: Sham operation; and Group VI: normal saline. ADMSCs obtained from male rats were defined with stem cell markers [CD11b/c(−), CD45(−), CD90(+), CD44(+), and CD49(+)]. DOX 12 mg/kg intraperitoneally (i.p.) was injected as a single dose in female rats. Resveratrol 100 mg/kg was injected three times i.p. in Groups II and IV. ADMSCs 2 × 106 cells/kg/dose were labeled with bromodeoxyuridine (BrdU) and injected i.p. for a total of three times in Groups III and IV. When the study was terminated after 4 weeks, the beating hearts were connected to a Langendorff setup and records were obtained for 30 minutes. Histopathological, immunhistochemical, and immunofluorescent examination with H&E, Troponin I, and BrdU stains were also performed. Also, ADMSCs were demonstrated in the myocardium of transplanted rats. Left ventricle functions and myocardial histology demonstrated significant impairment in DOX only group compared to groups with ADMSCs (P < .05). We suggest that RES and ADMSCs were successful in the prevention and treatment of the doxorubicin cardiomyopathy in rats. The hypothetical mechanisms of regeneration are multiple, including cell differentiation and autocrine/paracrine effects of ADMSCs.
Natural orifice translumenal endoscopic surgery applications in clinical practice

To review natural orifice translumenal endoscopic surgery (NOTES) applications in clinical practice and assess the evidence base for each application as reported in the literature. An electronic literature search was performed. Inclusion criteria were publications relating to NOTES applications in humans. For each type of operation the highest level of evidence available for clinical NOTES publications was evaluated. Morbidity and short-term operative outcomes were compared with gold standard published evidence where available. Finally, registered trials recruiting patients for NOTES applications were identified. Human NOTES publications with the highest level of evidence in each application are identified. There were no RCTs in the literature to date. The strongest evidence came in the form of large, multi-centre trials with 300-500 patients. The results are encouraging, comparable with gold standard techniques on morbidity and mortality. While short-term operative outcomes were also similar when compared to the gold standard techniques, other than improved cosmesis little else can definitely be concluded as a clear benefit of a NOTES procedure. transvaginal access. It is evident that morbidity appears to be higher when the transgastric route is used. The safety profile of hybrid NOTES transvaginal procedures is beginning to be confirmed as is evident from the large number of procedures presented in this review. A number of authors have presented work on pure NOTES procedures but the results are inconsist-ent and thus the vast majority of NOTES procedures worldwide are performed in a hybrid fashion with a variable amount of laparoscopy. This review of the clinical applications of NOTES summarises the growing evidence behind this surgical discipline and highlights NOTES procedures with an acceptable safety profile.
Is it acceptable for a physician to request informal payments for treatment? Lay people’s and health professionals’ views in Togo

The people’s views regarding informal payments for healthcare is essential if we are able to develop publicly supported interventions to address this phenomenon. We recruited a convenience sample of 300 lay people and health practitioners in Togo, a developing country experiencing this practice, and asked them how acceptable it would be for a physician to request informal payments for treatment in 36 scenarios. The scenarios were all combinations of three levels of the physician’s income (relatively well-paid, average, or underpaid); two levels of the patient’s wealth (wealthy vs. poor); two levels of the frequency of the practice in the area (common vs. rare); and three levels of the amount of payment requested ($50, $30, or $10). Two contrasting positions were found. A substantial minority of participants rejected the practice of informal payments, irrespective of circumstances. In contrast, a majority of them were of the opinion that when patients were wealthy and physicians were underpaid, this practice was acceptable. Health practitioners more frequently adhered to the ethical position than lay people. Implications for health policy are discussed.
The vitamin D receptor gene FokI polymorphism: Functional impact on the immune system

1α,25‐Dihydroxyvitamin D3 (1,25(OH)2D3) has important effects on the growth and function of multiple cell types. These pleiotropic effects of 1,25(OH)2D3 are mediated through binding to the vitamin D receptor (VDR). Several polymorphisms of the human VDR gene have been identified, with the FokI polymorphism resulting in VDR proteins with different structures, a long f‐VDR or a shorter F‐VDR. The aim of this study was to investigate the functional consequences of the FokI polymorphism in immune cells. In transfection experiments, the presence of the shorter F‐VDR resulted in higher NF‐κB‐ and NFAT‐driven transcription as well as higher IL‐12p40 promoter‐driven transcription. Marginal differences were observed for AP‐1‐driven transcription, and no differential effects were observed for transactivation of a classical vitamin D‐responsive element. Concordantly, in human monocytes and dendritic cells with a homozygous short FF VDR genotype, expression of IL‐12 (mRNA and protein) was higher than in cells with a long ff VDR genotype. Additionally, lymphocytes with a short FF VDR genotype proliferated more strongly in response to phytohemagglutinin. Together, these data provide the first evidence that the VDR FokI polymorphism affects immune cell behavior, with a more active immune system for the short F‐VDR, thus possibly playing a role in immune‐mediated diseases.
Straight Line Path Following for Formations of Underactuated Marine Surface Vessels

The problem of formation control and path following for underactuated 3-degrees-of-freedom (3-DOF) marine surface vessels is considered. The proposed decentralized controller makes the vessels asymptotically constitute a desired formation that follows a given straight line path with a given forward speed profile. The controller consists of a cross-track control law, based on line-of-sight guidance, and a nonlinear synchronization control law. The closed-loop dynamics of both the cross-track errors and the synchronization errors are analyzed in detail using nonlinear cascaded systems theory and the overall cascaded system is shown to be both uniformly globally asymptotically stable and uniformly globally exponentially stable under mild assumptions. The proposed control strategy is validated in experiments in both calm water and in waves using a scale model vessel.
δ Plots: A Tool for Analyzing Phylogenetic Distance Data

A method is described that allows the assessment of treelikeness of phylogenetic distance data before tree estimation. This method is related to statistical geometry as introduced by Eigen, Winkler-Oswatitsch, and Dress (1988 [Proc. Natl. Acad. Sci. USA. 85:5913–5917]), and in essence, displays a measure for treelikeness of quartets in terms of a histogram that we call a d plot. This allows identification of nontreelike data and analysis of noisy data sets arising from processes such as, for example, parallel evolution, recombination, or lateral gene transfer. In addition to an overall assessment of treelikeness, individual taxa can be ranked by reference to the treelikeness of the quartets to which they belong. Removal of taxa on the basis of this ranking results in an increase in accuracy of tree estimation. Recombinant data sets are simulated, and the method is shown to be capable of identifying single recombinant taxa on the basis of distance information alone, provided the parents of the recombinant sequence are sufficiently divergent and the mixture of tree histories is not strongly skewed toward a single tree. d Plots and taxon rankings are applied to three biological data sets using distances derived from sequence alignment, gene order, and fragment length polymorphism.
Expression of Translation Initiation Factors eIF-4E and eIF-2α and a Potential Physiologic Role of Continuous Protein Synthesis in Human Platelets

Summary It is generally believed that platelets do not have a functionally significant protein synthetic machinery. However, our analysis demonstrated that normal bone marrow megakaryocytes express high levels of translation initiation factors eIF-4E and eIF-2α and the expression of these protein synthesis initiation factors is continued in platelets (as determined by immunohistochemistry and Western blot analysis). Both eIF-4E and eIF-2α are key regulators of protein synthesis. The eIF-4E is a rate-limiting part of a multisubunit complex, eIF-4F, that binds to the 5’ cap structure present in virtually all eukaryotic mRNAs, and carries out transfer of mRNAs to ribosomes for translation. Translation initiation factor eIF-2α is also a rate-limiting protein which associates with two other proteins to form an eIF-2 initiation factor complex responsible for the transfer of initiator methionyl-tRNA to the 40S ribosomal subunit. We confirm that expression of eIF-4E and eIF-2α is biologically relevant in that platelets continue protein synthesis, albeit at a 16 times lower rate than WBC (as determined by 35S-labeled amino acid incorporation, SDS-PAGE and scintillation counting). Finally, we determined that protein synthesis inhibitors (puromycin and emetine) attenuate the platelet aggregation response to a combination of ADP and epinephrine, but potentiate the response to collagen. Our data are consistent with the existence of different signal transducing pathways mediating the response to ADP/epinephrine and collagen. We suggest that the ADP/epinephrine response is positively affected by continuously synthesized proteins, while the response to collagen is modulated by continuously produced inhibitory proteins. Taken together, our results suggest that continuous protein synthesis is important for platelet function and its role in platelet physiology and pathophysiology deserves further study.
Biological, Physical, and Chemical Properties of Eastern Equine Encephalitis Virus I. Purification and Physical Properties

A new purification procedure was adopted for Eastern equine encephalitis virus which does not subject the virus to pelleting at any stage. Three- to 4-liter volumes were passed through a diethylaminoethyl cellulose column. The virus-containing fractions were banded on a sucrose cushion and finally concentrated in an isopycnic band in a linear sucrose gradient. This method reduced the volume 1,000-fold with a concomitant increase in viral titer, i.e., better than 90% recovery. Numerous criteria have been used to establish that this viral preparation was essentially free from cellular debris and nonviral material. Physical studies on this purified viral product were initiated. The sedimentation coefficient as determined by band sedimentation was 240S, the buoyant density in sucrose was 1.18 g/cc, and the diameter of the virus was 54 nm. From the diameter and the buoyant density it was possible to calculate the molecular weight of a spherical particle. In this case, the calculated molecular weight for Eastern equine encephalitis virus was 58 × 106 daltons.
Specific localization of the lysis protein of bacteriophage MS2 in membrane adhesion sites of Escherichia coli

Specific localization of the lysis (L) protein of bacteriophage MS2 in the cell wall of Escherichia coli was determined by immunoelectron microscopy. After induction of the cloned lysis gene, the cells were plasmolyzed, fixed, and embedded in either Epon or Lowicryl K4M. Polyclonal L-protein-specific antiserum was purified by preabsorption to membranes from cells harboring a control plasmid. Protein A-gold was used to label the protein-antibody complexes. Between 42.8% (Lowicryl) and 33.8% (Epon) of the label was found in inner and outer membranes, but 30.3% (Lowicryl) and 32.8% (Epon) was present mostly in clusters in the adhesion sites visible after plasmolysis. The remaining label (26.9 and 33.4%, respectively) appeared to be present in the periplasmic space but may also have been part of membrane junctions not visible because of poor contrast of the specimen. In contrast, a quite different distribution of the L protein was found in cells grown under conditions of penicillin tolerance, i.e., at pH 5, a condition that had previously been shown to protect cells from L-protein-induced lysis. At tolerant conditions, only 21.0% of the L protein was in the adhesion sites; most of the protein (68.2%) was found in inner and outer membranes. It is concluded that lysis of the host, E. coli, was a result of the formation of specific L-protein-mediated membrane adhesion sites.
Conditional β1‐integrin‐deficient mice display impaired pancreatic β cell function

β1‐Integrin, a critical regulator of β cell survival and function, has been shown to protect against cell death and promote insulin expression and secretion in rat and human islet cells in vitro. The aim of the present study was to examine whether the knockout of β1‐integrin in collagen I‐producing cells would have physiological and functional implications in pancreatic endocrine cells in vivo. Using adult mice with a conditional knockout of β1‐integrin in collagen I‐producing cells, the effects of β1‐integrin deficiency on glucose metabolism and pancreatic endocrine cells were examined. Male β1‐integrin‐deficient mice display impaired glucose tolerance, with a significant reduction in pancreatic insulin content (p < 0.01). Morphometric analysis revealed a significant reduction in β cell mass (p < 0.001) in β1‐integrin‐deficient mice, along with a significant decrease in β cell proliferation, Pdx‐1 and Nkx6.1 expression when compared with controls. Interestingly, these physiological and morphometric alterations in female β1‐integrin‐deficient mice were less significant. Furthermore, β1‐integrin‐deficient mice displayed decreased FAK (p < 0.05) and ERK1/2 (p < 0.001) phosphorylation, reduced cyclin D1 levels (p < 0.001) and increased caspase 3 cleavage (p < 0.01), while no changes in Akt phosphorylation were observed, indicating that the β1‐integrin signals through the FAK–MAPK–ERK pathway in vivo. Our results demonstrate that β1‐integrin is involved in the regulation of glucose metabolism and contributes to the maintenance of β cell survival and function in vivo. Copyright © 2011 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.
A quick method for computing approximate thresholds for quantitative trait loci detection.

This article proposes a quick method for computing approximate threshold levels that control the genome-wise type I error rate of tests for quantitative trait locus (QTL) detection in interval mapping (IM) and composite interval mapping (CIM). The procedure is completely general, allowing any population structure to be handled, e.g., BC(1), advanced backcross, F(2), and advanced intercross lines. Its main advantage is applicability in complex situations where no closed form approximate thresholds are available. Extensive simulations demonstrate that the method works well over a range of situations. Moreover, the method is computationally inexpensive and may thus be used as an alternative to permutation procedures. For given values of the likelihood-ratio (LR)-profile, computations involve just a few seconds on a Pentium PC. Computations are simple to perform, requiring only the values of the LR statistics (or LOD scores) of a QTL scan across the genome as input. For CIM, the window size and the position of cofactors are also needed. For the approximation to work well, it is suggested that scans be performed with a relatively small step size between 1 and 2 cM.