Miracle-dz/UniFAR-FTUs huggingface dataset:
"Recall" pneumonitis: adriamycin potentiation of radiation pneumonitis in two children.

The radiographic findings in two children with acute "recall" pneumonitis, associated with administration of Adriamycin (doxorubicin hydrochloride) and actinomycin D at variable intervals after local radiation therapy, were presented to emphasize the unique radiographic appearance and clinical course. A 10-year-old girl underwent radiation therapy 9 weeks after completing an initial cycle of chemotherapy. Within hours of the resumption of chemotherapy, she was in clinical respiratory distress. Chest radiography showed a well-defined area of alveolar consolidation in the periphery of the right lung corresponding to the area of radiation. Shortness of breath and right chest rales developed in a 15-year-old boy within 12 hours of the resumption of chemotherapy 6 weeks after radiation therapy was completed. Chest radiography showed an alveolar infiltrate extending from the apex to the base of the right lung corresponding to the area of radiation. Symptoms may be confused with an infectious pathogenesis; thus, knowledge of the history of radiation therapy and the radiation port is important in initiating treatment with steroids rather than antibiotics.
Analysis of phenotypic change in relation to climatic drivers in a population of Soay sheep Ovis aries

Climatic change has frequently been identified as a key driver of change in biological communities. These changes can take the form of alterations to population dynamics, phenotypic characters, genetics and the life history of organisms and can have impacts on entire ecosystems. This study presents a novel investigation of how changes in a large scale climatic index, the North Atlantic Oscillation (NAO) can influence population dynamics and phenotypic characters in a population of ungulates. We use an integral projection model combined with actual climate change predictions to project future body size distributions for a population of Soay sheep Ovis aries. The climate change predictions used to direct our model projections were taken from published results of climate models, covering a range of different emissions scenarios. Our model results showed that for positive changes in the mean NAO large population declines occurred simultaneously with increases in mean body weight. The exact direction and magnitude of changes to population dynamics and character distributions were dependent on the greenhouse gas emissions scenario and model used to predict the NAO. This study has demonstrated how integral projection models can use outputs of climate models to direct projections of population dynamics and phenotypic character distributions. This approach allows the results of this study to be placed within current climate change research. The nature of integral projection models means that this methodology can be easily applied to other populations. The model can also be easily updated when new climate change predictions become available, making it a useful tool for understanding potential population level responses to climatic change. Synthesis Understanding how changes in climate affect biological communities is a key component in predicting the future form of populations. Utilising a novel approach that incorporates climatic drivers (in this instance the winter North Atlantic Oscillation) into an integral projection model framework, we predict future Soay sheep dynamics under specific climate change scenarios. Tracking quantitative trait distributions and life history metrics, our results predict declining population size and increasing body weight for an increasingly positive winter North Atlantic Oscillation index, as predicted by climate models. This has important implications for future wildlife management strategies and linking demographic responses to climate change.
A Tile-Based Visual Programming Language for High-Level Assembly

In this paper, a visual programming environment for the development of low-level and high-level assembly language programs is proposed, and is evaluated in the context of Green and Petre’s “Cognitive Dimensions” framework. The system acts as a code generator for a textual assembly compiler, and is designed to be flexible enough to accommodate any hardware architecture and operating system. As an implementation example, an interface prototype for the common 32-bit Intel Architecture is shown in this paper. In addition to low-level assembly instructions unique to each hardware platform, the language includes support for high-level assembly language programming structures such as conditional constructs, looping constructs and stack management.
The effect of very brief exposure on experienced fear after in vivo exposure

Two experiments tested the effect of exposure to masked phobic stimuli at a very brief stimulus onset asynchrony on reducing the subjective experience of fear caused by in vivo exposure to a feared object. In the main experiment, 35 spider-fearful and 35 non-fearful participants were identified with a questionnaire and a Behavioural Avoidance Test (BAT) with a live tarantula. One week later, they were individually administered one of two continuous series of masked images: spiders or flowers. They engaged in the BAT again immediately thereafter. They provided ratings of subjective fear at the end of each BAT (pre- and post-manipulation). Very brief exposure to images of spiders reduced the fearful group's and not the non-fearful group's experience of fear at the end of the BAT. This effect was replicated with another sample of 26 spider-fearful participants from the same population. Theoretical implications are discussed.
Kinetics and distribution of platelets in man

51Cr sodium‐chromate, though having been widely used in the last two decades for labeling platelets, suffers from several serious drawbacks, ie, low labeling efficiency, long physical half‐life, and low gamma photon yields. 111In‐oxine and 111In‐tropolone overcome these shortcomings and have the potential of precise determination of platelet kinetics as well as visualization and in vivo quantification of the temporal and spatial distribution of platelets in man. Computer analysis of platelet kinetics reveals that the multiple‐hit model fits the survival curve better than the linear or the exponential model. The multiple‐hit model provides not only the mean platelet survival time but also information on the initial recovery and the shape of the survival curve. The application of these techniques in normal and disease states should greatly enhance our understanding of the physiology and pathophysiology of platelets.
Misfolding of Mutant Aquaporin-2 Water Channels in Nephrogenic Diabetes Insipidus*

We reported that several aquaporin-2 (AQP2) point mutants that cause nephrogenic diabetes insipidus (NDI) are retained in the endoplasmic reticulum (ER) of transfected mammalian cells and degraded but can be rescued by chemical chaperones to function as plasma membrane water channels (Tamarappoo, B. K., and Verkman, A. S. (1998) J. Clin. Invest. 101, 2257–2267). To test whether mutant AQP2 proteins are misfolded, AQP2 folding was assessed by comparative detergent extractability and limited proteolysis, and AQP2 degradation kinetics was measured by label-pulse-chase and immunoprecipitation. In ER membranes from transfected CHO cells containing [35S]methionine-labeled AQP2, mutants T126M and A147T were remarkably detergent-resistant; for example wild-type AQP2 was >95% solubilized by 0.5% CHAPS whereas T126M was <10% solubilized. E258K, an NDI-causing AQP2 mutant which is retained in the Golgi, is highly detergent soluble like wild-type AQP2. The mutants and wild-type AQP2 were equally susceptible to digestion by trypsin, thermolysin, and proteinase K. Stopped-flow light scattering measurements indicated that T126M AQP2 at the ER was fully functional as a water channel. Pulse-chase studies indicated that the increased degradation rates for T126M (t 1 2 2.5 h) and A147T (2 h) compared with wild-type AQP2 (4 h) involve a brefeldin A-resistant, ER-dependent degradation mechanism. After growth of cells for 48 h in the chemical chaperone glycerol, AQP2 mutants T126M and A147T became properly targeted and relatively detergent-soluble. These results provide evidence that NDI-causing mutant AQP2 proteins are misfolded, but functional, and that chemical chaperones both correct the trafficking and folding defects. Strategies to facilitate protein folding might thus have therapeutic efficacy in NDI.
Human immunodeficiency virus and urinary tract infections in children

Abstract This was a retrospective study of HIV-infected children aged 0-12 years attending the King Edward VIII Hospital in Durban, South Africa over a 5-year period (January 1996 to December 2001) with cultureproven urinary tract infection (UTI). UTI was defined as the presence of a single bacterial growth of >105 colony-forming units/ml in a clean-catch, mid-stream urine sample or >103 organisms/ml in a catheter or suprapubic aspirate of urine. HIV/AIDS was diagnosed in accordance with World Health Organization and/or Centers for Disease Control criteria. Comparison between HIV-positive and HIV-negative children with UTI was done using the χ2 and Wilcoxon rank sum tests. Of the 55 children recruited into the study, 29 (52.1%) were HIV-positive and 26 (47.3%) HIV-negative. Escherichia coli was isolated in 50 (87.2%) children. Clinical presentation, aetiological agents, response to therapy and renal function were similar in both groups. This study showed no significant impact of HIV/AIDS on the presentation of UTI in children.
Up-regulation of nuclear PLCbeta1 in myogenic differentiation.

Phospholipase C beta(1) (PLCbeta(1)) signaling in both cell proliferation and differentiation has been largely investigated, but its role in myoblast differentiation is still unclear. The C2C12 myogenic cell line has been used in this study in order to find out the role of the two subtypes of PLCbeta(1), i.e., a and b in this process. C2C12 myoblast proliferate in response to mitogens and upon mitogen withdrawal differentiates into multinucleated myotubes. We found that differentiation of C2C12 skeletal muscle cells is characterized by a marked increase in the amount of nuclear PLCbeta(1)a and PLCbeta(1)b. Indeed, treatment with insulin induces a dramatic rise of both PLCbeta(1) subtypes expression and activity, as determined by immunochemical and enzymatic assays. Immunofluorescence experiments with anti-PLCbeta(1) specific monoclonal antibody showed a low level of cytoplasmatic and nuclear staining during the initial 12 h of differentiation whilst a massive nuclear staining is appreciable in differentiating cells. The time course of PLCbeta(1) expression versus Troponin T expression clearly indicates that the increase in the amount of PLCbeta(1) takes place 24 h earlier than that of Troponin T. Moreover, the overexpression of the PLCbeta(1)M2b mutant, lacking the nuclear localization signal and entirely located in the cytoplasm, represses the formation of mature multinucleated myotube. Taken together these results suggest that nuclear PLCbeta(1) is a key player in myoblast differentiation, functioning as a positive regulator of this process.
A dynamic model of plant growth with interactions between development and functional mechanisms to study plant structural plasticity related to trophic competition.

BACKGROUND AND AIMS The strong influence of environment and functioning on plant organogenesis has been well documented by botanists but is poorly reproduced in most functional-structural models. In this context, a model of interactions is proposed between plant organogenesis and plant functional mechanisms. METHODS The GreenLab model derived from AMAP models was used. Organogenetic rules give the plant architecture, which defines an interconnected network of organs. The plant is considered as a collection of interacting 'sinks' that compete for the allocation of photosynthates coming from 'sources'. A single variable characteristic of the balance between sources and sinks during plant growth controls different events in plant development, such as the number of branches or the fruit load. KEY RESULTS Variations in the environmental parameters related to light and density induce changes in plant morphogenesis. Architecture appears as the dynamic result of this balance, and plant plasticity expresses itself very simply at different levels: appearance of branches and reiteration, number of organs, fructification and adaptation of ecophysiological characteristics. CONCLUSIONS The modelling framework serves as a tool for theoretical botany to explore the emergence of specific morphological and architectural patterns and can help to understand plant phenotypic plasticity and its strategy in response to environmental changes.
Similarity to Molecules in the Training Set Is a Good Discriminator for Prediction Accuracy in QSAR

How well can a QSAR model predict the activity of a molecule not in the training set used to create the model? A set of retrospective cross-validation experiments using 20 diverse in-house activity sets were done to find a good discriminator of prediction accuracy as measured by root-mean-square difference between observed and predicted activity. Among the measures we tested, two seem useful: the similarity of the molecule to be predicted to the nearest molecule in the training set and/or the number of neighbors in the training set, where neighbors are those more similar than a user-chosen cutoff. The molecules with the highest similarity and/or the most neighbors are the best-predicted. This trend holds true for narrow training sets and, to a lesser degree, for many diverse training sets and does not depend on which QSAR method or descriptor is used. One may define the similarity using a different descriptor than that used for the QSAR model. The similarity dependence for diverse training sets is somewhat unexpected. It appears to be greater for those data sets where the association of similar activities vs similar structures (as encoded in the Patterson plot) is stronger. We propose a way to estimate the reliability of the prediction of an arbitrary chemical structure on a given QSAR model, given the training set from which the model was derived.
Regarding ADA Presidential Address

4. The experience summarized by Dr. Moses from his recent publication (3) is, in fact, difficult to compare with that of the DCCT. He refers to his subjects as "unselected patients irom a population-based register. " This register consisted of 387 subjects aged 0-39 years, of whom 208 are said to have had IDDM. No Cpeptide data are given with which to judge the absolute nature of their dependence on insulin, an important factor in the level of glycemic control achieved and the vulnerability to hypoglycemia (4-6). No information is provided as to what percentage of all IDDM patients in the Illawara area of Australia is contained in the register. From a reported catchment area of 250,000 people, 208 individuals might constitute less than half of the expected total number, assuming an IDDM prevalence of 0.2-0.3%. Furthermore, the sample of 103 subjects on which the above report is based appears to be selected from those attending a centralized diabetes service who had had an HbA]c measurement within the previous 6 months. Thus, in no sense can this be considered a true population-based sample.
Physical Training Increases Renal Injury in Rats with Chronic NOS Inhibition

Nitric oxide (NO) is involved in regulation of vascular tone and renal hemodynamics. Inhibition of NO synthase (NOS) by Nω-nitro-l-arginine methyl ester (L-NAME) promotes systemic hypertension and glomerular damage. Exercise is effective in reducing elevated blood pressure in hypertensive individuals and rats treated with L-NAME. We investigated the effects of regular aerobic exercise on renal injury in hypertensive rats with NOS inhibition. Adult Wistar rats were divided into four groups: sedentary or exercising, nonhypertensive (two groups) and hypertensive, sedentary or exercising (two groups). Treadmill running exercise was prolonged for 4 weeks (60 min.day− 1, 5 days/week, 20 m.min− 1, no incline), and hypertension was induced by L-NAME given orally to rats for 4 weeks (25 mg.kg− 1.day− 1 in drinking water). Blood pressure was monitored at baseline and then once a week throughout L-NAME administration. Kidney sections were examined for renal histopathology. Hypertensive animals exhibited elevated blood pressure, and exercise partly prevented this elevation. Renal injury observed as arteriolar wall thickening, focal tubular atrophy, and interstitial inflammatory infiltration was apparent in hypertensive animals, and exercise induced further renal damage in hypertensive animals. The present training protocol exacerbates renal insufficiency in NOS-blockage hypertension in rats.
Analysing and understanding news consumption patterns by tracking online user behaviour with a multimodal research design

Understanding people's online behaviour has traditionally been a field of interest of commercial research agencies. However, academic researchers in a variety of fields are interested in the same type of data to gain insights in the Web behaviour of users. Digital Humanities scholars interested in the use of digital collections are, e.g., interested in the navigation paths of users to these collections. In our case we wanted (1) to analyse the way news consumers visit news websites and (2) understand how these websites fit in their daily news consumption patterns. Until now most common applied scholarly research methods to analyse online user behaviour focus on analyses of log files provided by website owners or recalled user behaviour by survey, diary, or interview methods. Only recently scholars started to experiment with gathering real-world data of Web behaviour by monitoring a group of respondents. In this article we describe the set-up of 'The Newstracker', a tool that primarily allowed us to analyse online news consumption of a group of young Dutch news users on their desktop and laptop computers. We demonstrate the workflow of the Newstracker and how we designed the data collection and pre-processing phase. By reflecting on the technical, methodological, and analytical challenges we encountered, we illustrate the potential of online monitoring tools such as the Newstracker. We end our article with discussing its limitations by stressing the need for a multimethod study design when aiming not only to analyse but also to understand online user behaviour.
Coronary Heart Disease From a Life-Course Approach: Findings From the Health and Retirement Study, 1998-2004

Objective: Guided by a life-course approach to chronic disease, this study examined the ways in which childhood deprivation (low parental education and father’s manual occupation) may be associated with coronary heart disease (CHD). Method: Multilevel modeling techniques and a nationally representative sample of Americans above age 50 from the Health and Retirement Study (HRS; N = 18,465) were used to examine childhood and CHD relationships over the course of 6 years (1998-2004). Results: Having a father with ≤8 years of education was associated with 11% higher odds of CHD, accounting for demographic characteristics, adult socioeconomic status (SES; education, income, and wealth), CHD risks (diabetes, hypertension, cigarette smoking, and obesity), and other factors (childhood health, exercise, stroke, and marital status). Discussion: Policies and programs aimed at improving the conditions of poor children and their families may effectively reduce the prevalence of CHD in later life.
Approach to the Assessment of Platelet Function: Comparison between Optical-based Platelet-rich Plasma and Impedance-based Whole Blood Platelet Aggregation Methods

Platelet aggregation studies play an important role in the assessment of hereditary and acquired platelet function defects. The first aggregation test introduced into laboratory practice used platelet-rich plasma (PRP) where aggregation was detected by an optical method. The assessment of platelet function using whole blood (WB) aggregation by an impedance method followed up nearly 20 years later. The WB impedance aggregation assay appears to be superior to the optical method because it 1) evaluates platelets in a physiologic milieu in the presence of red and white blood cells, which are known to modulate platelet function; 2) is faster; 3) has higher sensitivity; and 4) does not require centrifugation, thus avoiding injury to platelets and loss of giant thrombocytes. These two assays were compared. Clearly, the WB impedance aggregation methodology has many advantages over the optical PRP assay for the assessment of the hyperactive platelet syndrome and the effects of anti-platelet drugs.
Equine Multiple Congenital Ocular Anomalies (MCOA) syndrome in PMEL17 (Silver) mutant ponies: five cases.

OBJECTIVE To describe the clinical phenotype and genetics of equine Multiple Congenital Ocular Anomalies (MCOA) syndrome in PMEL17 (Silver) mutant ponies. ANIMALS STUDIED Five presumably unrelated ponies. PROCEDURES The ponies were examined under field conditions in their barn by slit lamp biomicroscopy, indirect ophthalmoscopy, and applanation tonometry. Blood was collected and genomic DNA extracted for MCOA genotyping using the PMEL17ex11 marker. RESULTS One pony solely presented with temporal ciliary body cysts, suggestive of the less severe Cyst phenotype of MCOA; the animal was heterozygous at the MCOA locus. Multiple bilateral anterior segment anomalies were identified in four ponies, consistent with the more severe MCOA phenotype characterized by cornea globosa, iris hypoplasia, encircling granula iridica along the pupillary ruff, and cataracts. These animals were homozygous for the mutant MCOA allele. Four of the ponies had a silver dapple or chocolate coat color with white or flaxen manes and tails. Silver dappling was masked by the palomino coloring of a 5th pony that was homozygous at the MCOA locus. CONCLUSIONS The MCOA syndrome can be seen in ponies. The results of both clinical evaluation and genotyping resembled the previously described MCOA of both Rocky Mountain and Kentucky Mountain Saddle horses.
Dynamics of antibiotic usage in the intensive care unit at the University Hospital of the West Indies.

OBJECTIVE To determine antibiotic usage patterns in the Intensive Care Unit (ICU) at the University Hospital of the West Indies (UHWI). METHOD A cross-sectional, analytical study of consecutive patients admitted to the ICU was conducted between July and December 2007. Exclusion criteria were HIV-positive patients, patients < 12 years and those discharged or who died within 48 hours of admission. Data were collected from medical records, stored and analysed using the SPSS Version 12. RESULTS Of the 150 eligible patients, 109 had complete data (73%). Mean age was 50.8 +/- 20.7 years, with mean APACHE II score of 15.6 +/- 6.7. Forty-five patients (41.3%) received prophylactic antibiotics, most commonly ceftriaxone (31.7%) and metronidazole (19.0%). Appropriate discontinuation within 24 hours occurred in only 11.1%. Two-thirds of patients (67.9%) were treated with empiric antibiotics, most commonly piperacillin/tazobactam (32.1%), ceftazidime (27.5%) or metronidazole (27.5%). Reasons for empiric choice were primarily coverage of organisms based on presumed source of sepsis (45.6%), and broad spectrum, high-powered coverage (23.5%). Courses ranged from 1 - 42 days and were adequate based on subsequent cultures in 71% of cases. Culture reports took between 2 - 8 days with a mean of 3.7 days to become available. De-escalation was practised in only 2 of 26 (7.7%) cases and intravenous to oral switch therapy in only 3.3%. Thirty-two (29.4%) patients died, with sepsis being a cause in 12 (37.5%). CONCLUSIONS Improved attention to discontinuation of prophylactic antibiotics, appropriate duration of antibiotic courses and de-escalation are essential if the antibiotic practices in the ICU at the UHWI are to compare favourably with international recommendations.