Miracle-dz/UniFAR-FTUs huggingface dataset:
An individual based model of bearded pig abundance

We develop an individual based model of bearded pig abundance which predicts population dynamics based on the processes of energy accumulation and expenditure, reproduction and mortality of individual pigs. Because fatness is a key indicator of condition and reproductive potential in bearded pigs, processes are represented in terms of a fatness index variable. Only a small number of parameters are used in this simple model; these were chosen on the basis of fatness index data and qualitative observations of bearded pig population dynamics. The model was found to be accurate in predicting the timing of observed pig eruptions, and robust in that model results were unaffected by moderate variation in parameter values. There was insufficient quantitative data to obtain precise predictions of fatness and abundance, but qualitative insights about the effects of the size and timing of fruiting events on pig abundance were obtained. The results showed that a single fruiting peak will not produce a bearded pig eruption, no matter how large the fruiting event is, because the duration of the fruiting is too short to allow e re separated b or at least o ncrease the f patterns on b as a result o ©
INTRANASAL MUPIROCIN TO PREVENT POSTOPERATIVE STAPHYLOCOCCUS AUREUS INFECTIONS

A BSTRACT Background Patients with nasal carriage of Staphylococcus aureus have an increased risk of surgicalsite infections caused by that organism. Treatment with mupirocin ointment can reduce the rate of nasal carriage and may prevent postoperative S. aureus infections. Methods We conducted a randomized, double-blind, placebo-controlled trial to determine whether intranasal treatment with mupirocin reduces the rate of S. aureus infections at surgical sites and prevents other nosocomial infections. Results Of 4030 enrolled patients who underwent general, gynecologic, neurologic, or cardiothoracic surgery, 3864 were included in the intention-to-treat analysis. Overall, 2.3 percent of mupirocin recipients and 2.4 percent of placebo recipients had S. aureus infections at surgical sites. Of the 891 patients (23.1 percent of the 3864 who completed the study) who had S. aureus in their anterior nares, 444 received mupirocin and 447 received placebo. Among the patients with nasal carriage of S. aureus, 4.0 percent of those who received mupirocin had nosocomial S. aureus infections, as compared with 7.7 percent of those who received placebo (odds ratio for infection, 0.49; 95 percent confidence interval, 0.25 to 0.92; P=0.02). Conclusions Prophylactic intranasal application of mupirocin did not significantly reduce the rate of S. aureus surgical-site infections overall, but it did significantly decrease the rate of all nosocomial S. aureus infections among the patients who were S. aureus carriers. (N Engl J Med 2002;346:1871-7.)
Examining the effect of cash dividend on stock turnover : Evidences of Iran ' s Capital Market

The present study has first explained the effects of cash dividend and dividend yield on the companies' stock turnover, and then examined the impacts of different ownership percentages on stock turnover and dividend yield. Active companies in Iran's capital markets are considered as the statistical society during the period of 20032007.The results suggest that cash dividend has no significant effect on the companies' stock turnover, and that there is no relationship between the cash dividend and the stock turnover. The study of the impacts of institutional ownership percentage on stock turnover revealed that there is an inverse relationship between the institutional ownership percentage of a company and its stock turnover. However, no relationship was found between the institutional ownership percentage and dividend yield. [Maryam Goodarzi, Ali lalbar, Jafar Nekounam, Nasrolla Amoozesh, Hamid Reza Malak Hossini. Examining the effect of cash dividend on stock turnover: Evidences of Iran's Capital Market. Life Sci J 2013;10(5s):493-501] (ISSN:1097-8135). http://www.lifesciencesite. com. 86
Biochemical and Morphological Changes in Micropropagated Shoots of GiSeLa6 ® (Prunus spp.) Rootstock Inoculated with Trichoderma harzianum Strain T-22

Trichoderma harzianum strain T-22 (T22) has the ability of enhancing root growth and plant development. The aim of this research is to explain the biochemical basis of the direct plant-growth-promoting activity of T22. Seven days after the transfer to root-inducing medium, in vitro-cultured shoots of GiSeLa6 ® (Prunus cerasus × P. canescens), an important Prunus rootstock for sweet and sour cherry cultivars, were inoculated with T22. Root and shoot growth were significantly affected by T22 (+76 and +61%, respectively). Indole-3-acetic acid (IAA), transzeatin riboside (t-ZR) and dihydrozeatin riboside (DHZR) were analyzed by HPLC/MS. Acidification of the medium by plant, T22, and plant + T22 were assessed, whereas root morphological changes were observed by light and epifluorescence microscopic analysis. Nine days after inoculation, the levels of indole-3-acetic acid (IAA), trans-zeatin riboside (t-ZR), dihydrozeatin riboside (DHZR), gibberellic acid (GA3) and abscisic acid (ABA) were analyzed by high performance liquid chromatography coupled with mass spectrometry. The results showed that after T22-inoculation, IAA and GA3 significantly increased in both leaves (+49 and +71%, respectively) and roots (+40 and +143%, respectively) whereas t-ZR decreased (-51% in leaves and -37% in roots). Changes in DHZR were observed in T22-inoculated roots (-32%) but not in leaves, whereas the levels of ABA did not differ between the two treatments. Root activity determined a decline of medium acidity, and this effect was more marked in T22-inoculated plants (up to pH 4). Microscopic analysis revealed changes in root cell wall suberification in the exoderm and endoderm, with an increase in suberized cellular layers from 1 to 2-3, and an enhancement of cell wall epifluorescence. All these T22-induced changes promote rooting and shoot growth, and they could increase plant survival during the acclimatisation phase of nursery processes.
1 Biomarkers of Encephalitis

The development of encephalitis presents a dilemma to the clinician as during the early stages, when treatment would be most effective, the symptoms can be nonspecific with a broad differential. Imaging tests (e.g. magnetic resonance imaging and computed axial tomography scan), blood and urine tests as well as lumbar puncture are used to isolate and identify viruses, and together with careful and continuous neurological assessment provide data that may be suggestive of viral encephalitis. In the case of post-infectious or autoimmune encephalitis, a more intense investigation is needed to generate an accurate diagnosis. In addition to imaging tests and electroencephalography, blood and cerebrospinal fluid (CSF) need to be analyzed for evidence of inflammation and the presence of antibodies against cellular antigens. In recent years clinicians and investigators have pursued biomarkers that can aid in the diagnosis as well as prognosis and monitoring of patients with encephalitis. These biomarkers are increasingly important in the recognition and treatment of inflammatory and autoimmune central nervous system (CNS) disorders. This chapter will review the current literature of emerging biomarkers in the different types of encephalitis.
Gatekeeping in an inpatient rehabilitation facility to reduce morbidity and mortality due to cardiac disease: screening program using of BNP and ECG Auto-diagnosis

ABSTRACT The Kaifukuki-Rehabilitation Ward (KRW) is a type of inpatient rehabilitation facility in Japan. In the KRW of our institute, mortality and frequency of emergency referrals in 2013 were rather high, 2.6% and 4.3%, respectively. We aimed to investigate the usefulness of an original gatekeeping system to reduce mortality and morbidity from cardiac complications, and to improve the quality of medical care in the KRW. A total of 370 consecutive patients admitted to the KRW of Kobayashi Memorial Hospital between 1 May 2015 and 31 March 2016 were enrolled in this prospective observational study. All patients underwent a screening evaluation in which we defined patients as being screen positive (SC-positive) if they had at least one of 20 diagnostic ECG codes and/or BNP level over 140 pg/dL at admission. A cardiologist provided weekly interventions to those among SC-positive patients who needed cardiac disease treatment during hospitalization. In all, 129 patients were classified as SC-positive (mean age 80 years, 124 [32%] male), and weekly intervention was needed in 28 patients, including start of cardiac medication in 17 cases. Mortality and frequency of emergency transfer due to cardiac disease during hospital stay were 0.3% and 0.3%, respectively. Our gatekeeping system involving a screening evaluation at admission and weekly intervention in selected patients by a cardiologist may be useful in reducing mortality and rate of transfer due to cardiac disease and may improve quality of medical care in KRWs.
GENERAL MECHANICS FINDING THE OPTIMAL PARAMETERS FOR ROBOTIC MANIPULATOR APPLICATIONS OF THE BOUNDED ERROR ALGORITHM FOR ITERATIVE LEARNING CONTROL

This paper continues previous research of the Bounded Error Algorithm (BEA) for Iterative Learning Control (ILC) and its application into the control of robotic manipulators. It focuses on investigation of the influence of the parameters of BEA over the convergence rate of the ILC process. This is performed first through a computer simulation. This simulation suggests optimal values for the parameters. Afterwards, the estimated results are validated on a physical robotic manipulator arm. Also, this is one of the first reports of applying BEA into robots control.
Patterns of nephrin and a new proteinuria-associated protein expression in human renal diseases.

BACKGROUND Many factors contribute to the pathogenesis of glomerular proteinuria, but no exact molecular mechanisms are known to date. The recently reported protein nephrin, encoded by the NPHS1 gene, appears to be crucial for the integrity of the glomerular filtration barrier. METHODS Immunohistochemistry was used to detect possible changes in glomerular nephrin, and a new proteinuria-associated protein expression was developed in various diagnostic groups of human kidney biopsies. RESULTS In normal control kidney, antibodies to intracellular and extracellular nephrin domain showed a typical podocyte pattern of reactivity, while the 18C7 antibody to a normally inaccessible proteinuria-associated epitope was negative. Instead, strong glomerular positivity by 18C7 was seen in membranous glomerulonephropathy, membranoproliferative glomerulonephritis, systemic lupus erythematosus and cryoglobulinemic nephritis, while with antibodies to either intracellular or extracellular nephrin domains, a down-regulation in nephrin expression pattern was shown. CONCLUSIONS Unmasking or de novo expression of distinct glomerular proteins may be an important feature reflecting the pathophysiological events in these diseases with altered glomerular permeability, while only mild changes in the slit diaphragm protein nephrin appear to take place.
Thermoregulatory Control of Sympathetic Fibres Supplying the Rat's Tail

We investigated the thermoregulatory responses of sympathetic fibres supplying the tail in urethane‐anaesthetised rats. When skin and rectal temperatures were kept above 39 °C, tail sympathetic fibre activity was low or absent. When the trunk skin was cooled episodically by 2–7 °C by a water jacket, tail sympathetic activity increased in a graded fashion below a threshold skin temperature of 37.8 ± 0.6 °C, whether or not core (rectal) temperature changed. Repeated cooling episodes lowered body core temperature by 1.3–3.1 °C, and this independently activated tail sympathetic fibre activity, in a graded fashion, below a threshold rectal temperature of 38.4 ± 0.2 °C. Tail blood flow showed corresponding graded vasoconstrictor responses to skin and core cooling, albeit over a limited range. Tail sympathetic activity was more sensitive to core than to trunk skin cooling by a factor that varied widely (24‐fold) between animals. Combined skin and core cooling gave additive or facilitatory responses near threshold but occlusive interactions with stronger stimuli. Unilateral warming of the preoptic area reversibly inhibited tail sympathetic activity. This was true for activity generated by either skin or core cooling. Single tail sympathetic units behaved homogeneously. Their sensitivity to trunk skin cooling was 0.3 ± 0.08 spikes s−1°C−1 and to core cooling was 2.2 ± 0.5 spikes s−1°C−1. Their maximum sustained firing rate in the cold was 1.82 ± 0.35 spikes s−1.
Extranodal Marginal Zone B-cell Lymphomas of the Ocular Adnexa: Multiparameter Analysis of 34 Cases Including Interphase Molecular Cytogenetics and PCR for Chlamydia psittaci

Extranodal marginal zone B-cell lymphomas of MALT type (MALT lymphomas) show site-dependent variations in their morphologic, phenotypic, and/or cytogenetic findings. This report describes a comprehensive analysis of 34 ocular adnexa MALT lymphomas, including interphase fluorescence in situ hybridization for MALT lymphoma-associated cytogenetic abnormalities and polymerase chain reaction for Chlamydia psittaci, which has recently been suggested to be associated with ocular adnexa lymphomas. A typical morphologic pattern was identified in 79% of cases, while overtly monocytoid cytology (12%), predominantly plasmacytic features (9%), and lymphoepithelial lesions (3%) were uncommon. Aberrant CD43 or CD5 expression was also uncommon (12% and 3%, respectively). Plasmacytic differentiation (41%) was associated with stage IV disease (P=0.036) and gains of chromosomes 3 and/or 18q (P=0.021) (79%). +3 was more frequent in the orbit than in lacrimal gland or conjunctiva (P=0.005). Each of 31 cases was negative for MALT1 translocations. IGH translocations were identified in 3 cases (10%), although the translocation partner gene could not be identified. Polymerase chain reaction assays targeting species-specific regions within the C. psittaci omp1 and omp2 genes were negative in each of 30 cases. This study identifies the characteristic morphologic, phenotypic, and cytogenetic findings in ocular adnexa MALT lymphoma, including a subset differing from those arising at other anatomic sites. The frequent presence of +3 and/or +18q suggests that these abnormalities may contribute to lymphomagenesis. The lack of C. psittaci in this series, in contrast to some prior reports, indicates that there may also be geographic heterogeneity in the pathogenesis of ocular adnexa MALT lymphoma.
Wallpaper pattern alignment along garment seams

Despite recent developments towards on-demand, individualized garment design and fabrication, the majority of processes in the fashion industry are still inefficient and heavily dependent on manual work. A significant amount of recent research in this area has been focused on supporting designers to digitally create sewing patterns and shapes, but there is little work on textured fabrics. Aligning textile patterns like stripes or plaid along garment seams requires an experienced tailor and is thus reserved only for expensive, high-end garments. We present an interactive algorithm for automatically aligning repetitive textile patterns along seams for a given garment, allowing a user to make design choices at each step of our pipeline. Our approach is based on the 17 wallpaper groups and the symmetries they exhibit. We exploit these symmetries to optimize the alignment of the sewing pattern with the textured fabric for each of its pieces, determining where to cut the fabric. We optionally alter the sewing pattern slightly for a perfect fit along seams, without visibly changing the 3D shape of the garment. The pieces can then be cut automatically by a CNC or laser cutter. Our approach fits within the pipeline of digital garment design, eliminating the difficult, manual step of aligning and cutting the garment pieces by hand.
Correlation between chromogranin-A expression and pathological variables in human colon carcinoma.

BACKGROUND The possible association between neuroendocrine pattern and cancer prognosis could have substantial clinical implications, but the studies performed have generated conflicting results. As chromogranin-A (CGA) and dense-core granules are expressed concordantly, CGA expression may be used as a marker for cells expressing the complete neuroendocrine cell phenotype. MATERIALS AND METHODS Fifty-six patients with primary colon carcinoma who underwent potentially curative surgery were analyzed. For immunohistochemical study a monoclonal antibody specific for human chromogranin A was used. The tumor was considered positive when the number of CGA cells was higher than 10% in the section. The relation between CGA-positivity and depth of parietal invasion, lymph-node status and differentiation grade was examined. RESULTS We observed positive immunostaining in 22 cases out of 56 (39.3%). Significant association was found between CGA-positivity and lymph-node metastasis. CONCLUSION CGA overexpression could reflect a more aggressive tumor. If our results are confirmed, we should consider the CGA + colon cancer patients at risk for lymph-node disease and therefore include them in a adjuvant chemotherapeutic protocol.
2 7 M ar 2 01 9 Geometry of nonadiabatic quantum hydrodynamics

The Hamiltonian action of a Lie group on a symplectic manifold induces a momentum map generalizing Noether’s conserved quantity occurring in the case of a symmetry group. Then, when a Hamiltonian function can be written in terms of this momentum map, the Hamiltonian is called ‘collective’. Here, we derive collective Hamiltonians for a series of models in quantum molecular dynamics for which the Lie group is the composition of smooth invertible maps and unitary transformations. In this process, different fluid descriptions emerge from different factorization schemes for either the wavefunction or the density operator. After deriving this series of quantum fluid models, we regularize their Hamiltonians for finite ~ by introducing local spatial smoothing. In the case of standard quantum hydrodynamics, the ~ 6= 0 dynamics of the Lagrangian path can be derived as a finite-dimensional canonical Hamiltonian system for the evolution of singular solutions called ‘Bohmions’, which follow Bohmian trajectories in configuration space. For molecular dynamics models, application of the smoothing process to a new factorization of the density operator leads to a finite-dimensional Hamiltonian system for the interaction of multiple (nuclear) Bohmions and a sequence of electronic quantum states.
Improved language performance in Alzheimer disease following brain stimulation

Objectives Repetitive transcranial magnetic stimulation (rTMS) has been proposed as a possible treatment for the cognitive deficits associated with Alzheimer disease (AD). The aim of this study was to assess the long-term effects, on cognitive performance, of rTMS applied to the left dorsolateral prefrontal cortex (DLPFC) in AD patients. Methods Ten AD patients were randomly assigned to one of two study groups. Multiple-baseline design was used.The first group underwent a 4-week real rTMS stimulation protocol, while the second underwent a 2-week placebo treatment, followed by 2 weeks of real rTMS stimulation. Each session consisted of the application of rhythmic high-frequency rTMS over the DLPFC for 25 min. Sessions occurred once daily, 5 days/week. The main analysed outcome was the change in cognitive test performance at 2 and 4 weeks after rTMS treatment initiation, with a follow-up performed 8 weeks after the end of rTMS, in comparison with baseline performance. Results A significant difference was found between groups over sessions in terms of the percentage of correct responses of auditory sentence comprehension. Only real treatment induced an improvement in performance with respect to baseline or placebo. Moreover, both groups showed a lasting effect on the improved performance 8 weeks after the end of treatment. Conclusion The findings provide initial evidence for the persistent beneficial effects of rTMS on sentence comprehension in AD patients. Rhythmic rTMS, in conjunction with other therapeutic interventions, may represent a novel approach to the treatment of language dysfunction in AD patients.
Inequality , Portfolio Choice and the Business Cycle

I study the effect of heterogeneity, in both the level and composition of wealth, in a dynamic stochastic overlapping-generations economy where households face uninsurable unemployment, earnings, and liquidity risk. Households pay transactions costs when they adjust savings held in high expected return assets, which make such savings illiquid. They also hold liquid, lower return assets. I show that household-level disparities in liquidity are important for understanding differences in their behavior, as well as aggregate changes in consumption and investment, over the Great Recession. When I allow for a rise in both unemployment and disaster risk, reducing households’ expected income and the expected return on their illiquid savings, aggregate consumption and investment fall to levels seen in the recession. The response of aggregate consumption is sensitive to the behavior of wealth poor households with a high marginal utility of consumption. Facing a large possible fall in earnings, they build precautionary savings in liquid assets. However, in a typical incomplete markets model with a single asset, all households would respond to the fall in the expected return on savings following a rise in disaster risk. The resulting substitution effect would offset much of the negative wealth effect on aggregate consumption. In contrast, when much of wealth is illiquid, many households do not respond to a fall in its expected return, substantially dampening the substitution effect. Moreover, wealthier households, more likely to adjust their portfolios, increase their shares of liquid assets. This results in a large fall in aggregate investment.
Spatial numerical ranges of elements of Banach algebras

In this paper, the notion of spatial numerical range of elements of Banach algebras without identity is studied. Specifically, the relationship between spatial numerical ranges, numerical ranges and spectra is investigated. Among other results, it is shown that the closure of the spatial numerical range of an element of a Banach algebra without Identity but wlth regular norm is exactly its numerical range as an element of the unitized algebra. Futhermore, the closure of the spatial numerical range of a hermitian element coincides with the convex hull of its spectrum. In particular, spatial numerical ranges of the elements of the Banach algebra C0(X) are described.
Sequential Development of Cognitive Complexity

It has been demonstrated by Bieri and others that cognitive complexity is a meaningful personality construct for adults and older adolescents. The present study investigated by use of the Adapted Modified Role Repertory Test and the Modified Role Repertory Test possible developmental change in a child's system of role constructs, i.e., a child's ability to construe social behavior in a multi-dimensional way. Subjects were 90 third, 99 fifth, 90 seventh, and 89 ninth grade children, and 83 adults. Data suggest that with time a child's system of constructs becomes more differentiated. Therefore, development is accompanied by greater cognitive complexity.