Miracle-dz/UniFAR-FTUs huggingface dataset:
An AFLP-based procedure for the efficient mapping of mutations and DNA probes in barley.

A strategy based upon AFLP markers for high-efficiency mapping of morphological mutations and DNA probes to linkage groups in barley is presented. First, 511 AFLP markers were placed on the linkage map derived from the cross Proctor x Nudinka. Second, loci controlling phenotypic traits were assigned to linkage groups by AFLP analysis, using F2 populations consisting of 30-50 mutant plants derived from crosses of the type "mutant x Proctor" and "mutant x Nudinka. " To map DNA probes, 67 different wild-type barley lines were selected to generate F2 populations by crossing with Proctor and Nudinka. F2 plants that were polymorphic for a given RFLP fragment were classified into genotypic classes. Linkage of the RFLP polymorphism to 1 of the 511 AFLP loci was indicated by cosegregation. The use of the strategy is exemplified by the mapping of the mutation branched-5 to chromosome 2 and of the DNA probes Bkn2 and BM-7 to chromosomes 5 and 1, respectively. Map expansion and marker order in map regions with dense clustering of markers represented a particular problem. A discussion considering the effect of noncanonical recombinant products on these two parameters is provided.
Domain Knowledge and Decision Time: A Framework for Soft Computing Applications

We analyze the issue of decision-making using soft computing (SC) models. We define a natural framework in the cross product of the decision's time horizon and the type of domain knowledge used by the SC models. Within this framework, we analyze the progression from simple lexicon to annotated lexicon, morphology, syntax, semantics, and pragmatics. We compare this progression with the injection of domain knowledge in SC to perform tasks in the context of prognostics & health management (PHM), such as anomaly detection and identification (unsupervised clustering), failure mode analysis (supervised learning), prognostics of remaining useful life (prediction), on-board fault accommodation (realtime control), and off board logistics actions (decision support). Finally, we analyze evolutionary fuzzy systems (EFS) and determine their position and role in this framework
Loss of muscarinic receptors and of stimulated phospholipid labeling in ibotenate-treated hippocampus

The stimulation of phospholipid labeling by muscarinic agonists has been examined in nerve ending preparations from lesioned hippocampus in order to investigate the synaptic locus of the effect. Unilateral injections of the neurotoxin, ibotenic acid, into the hippocampus resulted in an extensive loss of nerve cells from both the dentate gyrus and hippocampus on the lesioned side and a parallel loss of muscarinic receptors as revealed by [3H]quinuclidinyl benzilate autoradiography. Homogenates and nerve ending fractions prepared from the lesioned side of the hippocampus possessed a reduced specific activity (expressed per milligram of protein) of glutamic acid decarboxylase as well as a reduced number of muscarinic receptors compared with the control side. By contrast, choline acetyltransferase activity was either unchanged or slightly increased on the lesioned side. Although there was a reduced yield (25%) of nerve endings from the lesioned side, the specific activity of 32Pi incorporation into phospholipids in the absence of added carbachol was comparable to that of the control side. There was, however, a marked reduction in the carbachol stimulation of phosphatidic acid and phosphatidylinositol labeling in nerve ending fractions obtained from he lesioned hippocampus. These results indicate that the muscarinic receptors present in nerve ending fractions from hippocampus and implicated in stimulated phospholipid turnover are derived from cholinoceptive intrinsic neurons.
Analgesic Effect of Elastoviscous Hyaluronan Solutions and the Treatment of Arthritic Pain

Elastoviscous hyaluronan solutions have an analgesic effect when injected intra-articularly in animal and human joints. This was first discovered using animal behavioral models and later confirmed in neurophysiological studies in cat and rat joints. These studies on both normal and experimentally produced arthritis in joints confirmed that only elastoviscous solutions of hyaluronan or certain of its derivatives (hylans) have a desensitizing effect on nociceptive sensory receptors. Recently, this desensitizing effect of elastoviscous hyaluronan solutions was also demonstrated on intact or on isolated patches of oocyte cell membranes. Viscosupplementation, the exchange of pathological synovial fluid in arthritic joints with pure elastoviscous solutions of hyaluronan or hylans, is a widely accepted therapeutic modality used to provide long-lasting analgesia in human knee joints. The clinical studies performed on human and animal temporomandibular joints since the mid-1970s are reviewed. These trials used three distinctly different preparations made from hyaluronan of different average molecular weight, polydispersity and, consequently, different elastoviscous properties. These differences are demonstrated and the consequences on the potential efficacy of the preparations are discussed.
Low Back Pain in Military Basic Trainees: A Pilot Study

Many studies have been done to elucidate risk factors for low back pain in the general population. A review of the literature reveals that no studies have described law batik pain in the military. A pilot study was performed to evaluate the incidence, prevalence, and risk factors of low back pain in a group of military basic trainees. We found art incidence of 17%, of numerous demographic aril risk factors studied, only cigarette use was significantly associated with low back pain. A previous history of chronic low back pain was not significantly associated with law back pain during training but was predictive of difficulty completing training. The authors conclude that low bank pain occurs frequently during Army basic training and that cigarette smoking is associated with increased risk.
An in depth analysis of histopathological characteristics found in keratoconus

Aims: The aims of this study were to re-assess the histopathology of the disease by introducing more modern measuring techniques and to determine if axial stromal thinning, which is the most apparent change, is related to the other alterations observed. Methods: Recipient keratoconic corneas from 36 patients following corneal transplantation were studied. Haematoxylin and eosin (H&E) and periodic acid-Schiff (PAS) staining were used to identify breaks in Bowman's layer and Descemet's membrane. Thickness of corneal layers was measured by Leica QWin software. Epithelial and stromal thickness were measured in each sample at the periphery of the corneal button and at the area of maximal stromal thinning. The presence of apoptotic cells in Bowman's layer breaks was detected by terminal deoxynucleotidyl transferase mediated dUTP-X nick end labelling. Results: In all 36 corneal samples the central stroma, at the apex of the cone, was thinner than the peripheral. There was a negative correlation between central stromal and central epithelial thickness (p = 0.009). Bowman's layer breaks were found in 92% of corneas. Apoptotic cells were detected at the level of Bowman's breaks membrane. We found a positive correlation between epithelial thickness and the number of Bowman's layer breaks (p = 0.009 for central epithelial thickness and p = 0.003 for peripheral epithelial thickness). Descemet's membrane deformities were observed in 19% of corneas and central stromal thickness of these corneas was significantly less than corneas without breaks (p = 0.006). Conclusions: There are various different histopathological features associated with keratoconus and some of them are very subtle and not very well studied. Accurate measurements also suggest some correlations between them. Stromal thinning is associated with the number of breaks in Descemet's membrane, but it is the thickening of the epithelium which is associated with breaks in Bowman's layer.
The duration of speech pauses in a multilingual environment

In this paper we present a study of speech pauses at three different speaking rates, based on the analysis of four hours of read speech in six European languages. Our results confirm earlier observations that the logarithmic duration of the pauses can be well approximated by a bi-Gaussian distribution. We found this also to be true at slow and fast speaking rates. Our analysis further shows that, as far as the long speech pauses are concerned, similar strategies are used in all languages considered. For speaking slowly, speakers increase the total amount of pauses and they use a wider range of pause durations. Overall, there appeared to be no striking change in the average, nor in the variance of the distribution of the pause durations. For speaking rapidly, speakers decrease the amount of pauses used and they refrain from using the longest pauses that occur in their normal speech. Overall, this results in a lower average and a smaller variance of the pause durations.
G-protein-independent Activation of Tyk2 by the Platelet-activating Factor Receptor*

Platelet-activating factor (PAF) is a potent pro-inflammatory phospholipid with multiple physiological and pathological effects. PAF exerts its activity through a specific heptohelical G-protein coupled receptor, expressed on a variety of cell types, including leukocytes. In this study, we showed that PAF induced a rapid tyrosine phosphorylation of the Tyk2 kinase in the monocytic cell lines U937 and MonoMac-1. PAF-initiated Tyk2 phosphorylation was also observed in COS-7 cells transiently transfected with the human PAF receptor (PAFR) and Tyk2 cDNAs. In addition, we found that Tyk2 co-immunoprecipitated and co-localized with PAFR, independently of ligand binding. Deletion mutants of Tyk2 indicated that the N terminus of the kinase was important for the binding to PAFR. Activation of Tyk2 was followed by a time-dependent 2–4-fold increase in the level of tyrosine phosphorylation of signal transducers and activators of transcription 1 (STAT1), STAT2, and STAT3 and a sustained 2.5-fold increase in STAT5 tyrosine phosphorylation. In MonoMac-1 cells, STAT1 and STAT3 translocated to the nucleus following PAF stimulation, and their translocation in transiently transfected COS-7 cells was shown to be dependent on the presence of Tyk2. In addition, when COS-7 cells were transfected with PAFR and constructs containing PAFR promoter 1, coupled to the luciferase reporter gene, PAF induced a 3.6-fold increase in promoter activation in the presence of Tyk2. Finally, PAFR mutants that could not couple to G-proteins were found to effectively mediate Tyk2 activation and signaling. Taken together, these findings suggest an important role for the Janus kinase/STAT pathway in PAFR signaling, independent of G-proteins, and in the regulation of PAF receptor expression by its ligand.
Ferroelectric Properties and Polarization Switching Kinetic of Poly (vinylidene fluoride-trifluoroethylene) Copolymer

The discovery of the piezoelectric properties of poly(vinylidene fluoride) (PVDF) by Kawai [Kawai, 1969], and the study of its pyroelectric and nonlinear optical properties [Bergman et al., 1971; Glass, 1971] led to the discovery of its ferroelectric properties in the early 1970s. Since that time, considerable development and progress have been made on both materials and devices based on PVDF. This work helped establish the field of ferroelectric polymer science and engineering [Nalwa, 1995a]. There are many novel ferroelectric polymers, such as poly(vinylidene fluoride) (PVDF) copolymers, poly(vinylidene cyanide) copolymers, odd-numbered nylons, polyureas, ferroelectric liquid crystal polymers and polymer composites of organic and inorganic piezoelectric ceramics [Nalwa, 1991 and Kepler & Anderson, 1992 as cited in Nalwa, 1995b; Nalwa, 1995a]. Among them, PVDF, and its copolymers are the most developed and promising ferroelectric polymers because of their high spontaneous polarization and chemical stability. Ferroelectricity is caused by the dipoles in crystalline or polycrystalline materials that spontaneously polarize and align with an external electric field. The polarization of the dipoles can be switched to the opposite direction with the reversal of the electric field. Similar to inorganic ferroelectric materials such as PbZr0.5Ti0. 5O3 (PZT) and SrBi2Ta2O9 (SBT), organic ferroelectric materials exhibit ferroelectric characteristics such as Curie temperature (the transition temperature from ferroelectrics to paraelectrics), coercive field (the minimum electric field to reverse the spontaneous polarization) and remanent polarization (the restored polarization after removing the electric field). However, the low temperature and low fabrication cost of organic ferroelectric materials enable them to be used in a large number of applications, such as flexible electronics. In this chapter, the discussion is focused on poly(vinylidene fluoride-trifluoroethylene) [P(VDF-TrFE)], one of the most promising PVDF ferroelectric copolymers. The main objective of this chapter is to describe the ferroelectric properties of P(VDF-TrFE) copolymer and review the current research status of ferroelectric devices based on this material. The chapter is divided in six sections. The first section introduces the topic of organic ferroelectrics. The second section describes the material properties of the ferroelectric phase of P(VDF-TrFE) including phase structures, surface morphology, crystallinity and molecule chain orientation. Next, the electrical properties such as polarization, switching current, etc.
Spatial multiplexing in heterogeneous networks with MMSE receiver

In this paper, we analyze the downlink of a multi-antenna heterogeneous cellular network with distance-dependent interference. In particular, we consider open-loop spatial multiplexing (SM) with minimum mean-square estimation (MMSE) receiver for suppressing self-interference as well as other cell interference. Coverage probability and rate distribution are obtained with biased user association rule and inter-cell interference. The results show that using full rate SM at the macro base stations (BSs) degrades the data rate for a large percentage of cell-edge users compared to a low rate SM transmission. Therefore, the cell edge data rate can be improved substantially by reducing the SM rate at the macro BSs while maintaining full SM rate at the pico BSs. The loss in mean spectrum efficiency (SE) caused by the SM rate reduction is shown to be acceptable for the cases of interest.
Evaluation of the phenolic and flavonoid contents and radical scavenging activity of three southern African medicinal plants

Warburgia salutaris (Bertol. F.) Chiovs, Rhoicissus tridentata (L.f.) Wild & Drum and Terminalia sericea (Burch. ex DC.), are widely used medicinal plants in southern Africa. The aim of the study was to determine the phenolic and flavonoid content and evaluate the antioxidant activity of the three medicinal plants. Total phenolic and flavonoid contents were determined spectrophotometrically as gallic acid and rutin equivalents, respectively. Individual phenolic acids were identified by means of gas chromatography-mass spectrometry. Antioxidant activities of the crude extracts were assessed using the TEAC assay. The highest phenolic content was detected in the crude methanol extract of the bark of W. salutaris and the highest flavonoid content was found in the crude methanol extract of the leaves of this plant. In all the studied plants the alkaline hydrolysable fraction yielded a greater variety of phenolic acids compared to the soluble/free phenolic acid fractions. The three medicinal plants investigated were found to be strong radical scavengers supporting the traditional use of these medicinal plants.
Use of a modified transfixation pin cast for treatment of comminuted phalangeal fractures in horses.

OBJECTIVES To (1) report a modified transfixation pin cast technique, using dorsal recumbency for fracture reduction, distal positioning of the pins in the epiphysis and distal metaphysis, and a hybrid cast, combining plaster of Paris (POP) and fiberglass casting, and (2) report outcome in 11 adult horses. STUDY DESIGN Case series. ANIMALS Adult horses (n = 11) with comminuted phalangeal fractures. METHODS Horses were anesthetized and positioned in dorsal recumbency. The phalangeal fracture was reduced by limb traction using a cable attached to the hoof. Screw fixation in lag fashion of fracture fragments was performed when possible. Transfixation casting was performed using two 6.3 mm positive profile centrally threaded pins with the 1st pin placed in the epiphysis of the metacarpus/tarsus at the center of, or slightly proximal to, the condylar fossa and the 2nd one 3-4 cm proximal. A hybrid cast was applied. RESULTS Forelimbs were involved in 9 horses and the hind limb in 2. Pins were maintained for a minimum of 6 weeks. No pin loosening was observed at the time of removal (6-8 weeks). A pony fractured the distal aspect of the metacarpus at the proximal pin. Nine horses survived (82%); none of the horses developed septic arthritis despite the distal location of the distal pin, close to the fetlock joint. CONCLUSION This modified transfixation pin casting technique was associated with good pin longevity and could reduce the risk of secondary pin hole fractures and pin loosening.
Clocks within the Master Gland

Various aspects of mammalian endocrine physiology show a time-of-day variation with a period of 24 h, which represents an adaptation to the daily environmental fluctuations resulting from the rotation of the earth. These 24-h rhythms in hormone abundance and consequently hormone function may rely on rhythmic signals produced by the master circadian clock, which resides in the suprachiasmatic nucleus and is thought to chiefly dictate the pattern of rest and activity in mammals in conjunction with the light/dark (LD) cycle. However, it is likely that clocks intrinsic to elements of the endocrine axes also contribute to the 24-h rhythms in hormone function. Here we review the evidence for rhythm generation in the endocrine master gland, the pituitary, and its physiological significance in the context of endocrine axes regulation and function.
Fentanyl Abuse and Dependence

Abstract We have proposed a novel hypothesis regarding the potential role of occupational or second-hand exposure in physician substance use, abuse, and addiction. While only 5.6% of licensed physicians in Florida are anesthesiologists, nearly 25% of physicians followed for substance abuse/dependence are anesthesiologists. When we sort by drug of choice, anesthesiologists have more opioid abuse and dependence than other physicians and appropriate controls. Abuse of one opioid, fentanyl, appears to be increasing and has been noted among the State of Florida's causes of opioid deaths. Fentanyl and sufentanyl are commonly administered highly potent opioid analgesics, as much as 80-800 times as potent as morphine. We have recent data from the State of Florida impaired physicians database, which has allowed us to categorize all fentanyl abusing and/ or dependent physicians. Just knowing that a physician abuses fentanyl gives you a good clue as to their specialty; 75% are anesthesiologists! While drug abuse researchers, oncologists and others who handle drugs of abuse everyday, have no greater incidence of opioid abuse or dependence, anesthesiologists are at the top of every list. Can this be due to just access and stress? We have proposed an alternative hypothesis of second hand exposure. To test this hypothesis, we developed a sensitive LC/MS/MS assay to measure the intravenous anesthetic and analgesic agents, propofol and fentanyl in air. Not only did we detect propofol and fentanyl in cardiovascular surgery operating room air, we also found the highest concentrations were close to the patient's mouth where anesthesiologists work for hours. Like tobacco, second hand opioid exposure can sensitize and change the brain making abuse, dependence and behavioral disorders more likely. Thus environmental exposure and sensitization may be an important risk factor in physician addiction. Second hand exposure may affect treatment outcome and explain anesthesiologist's inability to return to work in the operating room. We are developing an animal model for second hand exposure and additional studies of the operating room and cardiac anesthesiologists are underway.
Immediate Postoperative Complications in DIEP versus Free/Muscle-Sparing TRAM Flaps

Background: The deep inferior epigastric perforator (DIEP) flap is a major advance in breast reconstruction, but many surgeons are reluctant to use it because of concerns about a higher flap loss rate when compared with free/muscle-sparing transverse rectus abdominis myocutaneous (TRAM) flaps. Previous studies, however, have not statistically analyzed the relationship of patient characteristics to outcome. This study evaluates the authors' institutional experience with immediate postoperative complications following DIEP and free/muscle-sparing TRAM flaps. Methods: Results of 200 consecutive free/muscle-sparing TRAM and DIEP flaps performed by two surgeons at a single institution between 2003 and 2005 were reviewed using a prospectively maintained database. The incidence of flap complications was compared. Patient demographics, procedure type, diagnosis, adjuvant treatment, and complications were recorded. Outcome variables included total and partial flap loss, infection, seroma, hematoma, wound-healing problems, fat necrosis, and mastectomy flap necrosis. Results: One hundred forty-three patients were treated with 159 free/muscle-sparing TRAM flaps and 41 DIEP flaps. The demographics of the two groups were statistically similar. No statistically significant differences were noted in total or partial flap loss. Conclusions: In the authors' series, the use of the DIEP flap did not result in more postoperative flap-related complications when compared with the free/muscle-sparing TRAM flap. Furthermore, no patient characteristics were statistically associated with a more successful result. The authors conclude that in patients whose anatomy reveals perforators of adequate size, the DIEP flap is a safe and reliable procedure for breast reconstruction.
Ultrasound-Guided Fine-Needle Aspiration Cytology of Non-Palpable Supraclavicular Lymph Nodes in Sarcoidosis

Purpose: The aim of this prospective study was to determine the incidence of enlarged supraclavicular lymph nodes by US and the diagnostic yield of US-guided aspiration cytology in the diagnosis of sarcoidosis. Methods: During a 54-month period, all consecutive patients with a clinical suspicion of sarcoidosis underwent supraclavicular US at the Kiljava Hospital, Finland. All patients with enlarged supraclavicular lymph nodes underwent US-guided fine-needle aspiration biopsy (FNAB) of the lymph node. Results: Of a total of 250 patients, 27 (10.8%) had enlarged supraclavicular lymph nodes at US. All these were non-palpable at clinical examination. The cytological specimen was quantitatively sufficient in 25 of the 27 cases (93%). In 22 (88%) of these, the cytological diagnosis was granulomatous inflammation suggestive of sarcoidosis. Three aspirates yielded reactive hyperplasia and 2 specimens were insufficient. No complications occurred. The patients were followed for 2–42 months (mean 19 months), and the diagnosis of sarcoidosis was confirmed clinically in all cases. Conclusion: Supraclavicular US detects non-palpable enlarged lymph nodes in 1/10 of the patients with suspected sarcoidosis. In this subgroup of patients, US combined with aspiration cytology may give cytological evidence of granulomatous disease similar to sarcoidosis and more invasive diagnostic methods can be avoided.