Miracle-dz/UniFAR-FTUs huggingface dataset:
Induction of Primordial Germ Cells from Pluripotent Epiblast

The formation of germ cells during embryogenesis bears the ultimate importance for the continuation of every species. It becomes evident that mechanisms governing germ cell fate specification are not well conserved across the animal kingdom. In most of the invertebrate and nonmammalian vertebrate species, certain maternally derived factors are key to the establishment of germ cell lineage. In contrast, mouse primordial germ cells (PGCs) are induced from the pluripotent epiblast cells before and during gastrulation by the extraembryonic cell-derived signals. The molecular identity for some of these signals has recently been revealed by genetic and epiblast culture experiments. Both bone morphogenetic proteins 4 (Bmp4) and 8b (Bmp8b) are expressed in the extraembryonic ectoderm and are required for PGC formation. Furthermore, BMP4 or BMP8B alone are unable to induce PGCs from cultured epiblasts, while they can in combination, indicating they signal through separate receptor complexes. In addition, Bmp4 homozygous embryos cannot be induced to form PGCs by the synergistic action of BMP4 and BMP8B, suggesting that BMP4 proteins produced by pregastrula embryos are required for epiblast cells to maintain pluripotency. Moreover, Bmp2, a close relative of Bmp4, is expressed in visceral endoderm at the time of PGC specification, and inactivation of Bmp2 results in a reduction in PGC number, revealing a novel function of visceral endoderm in PGC generation in the mouse.
Intravenous administration of amino acids during anesthesia stimulates muscle protein synthesis and heat accumulation in the body

The aim of this study was to determine the contribution of protein synthesis to the prevention of anesthesia‐induced hypothermia by intravenous administration of an amino acid (AA) mixture. We examined changes in intraperitoneal temperature (Tcore), rates of protein synthesis (Ks) and the phosphorylation states of translation initiation regulators and their upstream signaling components in skeletal muscle of conscious (Nor) and propofol‐anesthetized (Ane) rats after intravenous administration of a balanced AA mixture or saline (Sal). Compared with Sal administration, AA markedly attenuated the decrease in the Tcore of rats during anesthesia, while Tcore in the Nor‐AA group became slightly elevated during treatment. Stimulation of muscle protein synthesis resulting from AA administration was observed in each case, but Ks in the Ane‐AA group remained lower than in the Nor‐Sal group. Administration of AA during anesthesia significantly increased plasma insulin to levels approximately 6‐fold greater than the Nor‐AA group and enhanced phosphorylation of 4E‐BP1, S6K1, PKB and mTOR, relative to all other groups and treatments. These results suggest that AA administration during anesthesia stimulates muscle protein synthesis via insulin‐mTOR–dependent activation of translation initiation regulators caused by markedly elevated insulin and thereby facilitates thermal accumulation in the body.
Measurements of Ballistic Deficits for Parallel Plate Ionization Chambers

Ionization chambers are the important gas-filled ionization detectors for heavy ion detection and spectroscopy. As the effect of ballistic deficit is the imprecision in the measurement of the pulse-height, the measurements of ballistic deficits for the pulses from ionization chambers of different types are expected to play very important role in the heavy ion spectroscopy. We have carried out measurements on the ballistic deficits for the pulses from the two-electrode parallel plate ionization chamber as well as for the pulses from the gridded parallel plate ionization chamber by processing these pulses through a simple CR-RC shaping network with pole-zero cancellation. The height of the shaped pulse versus shaping time curves for these ionization chambers show saturation at higher shaping times. Taking saturated pulse-height as the maximum possible pulse-height, the ballistic deficits have been estimated for different shaping times and are compared with the calculations based on the numerical integration method. The experimental results are in good agreement with the theoretical predictions, showing clearly that the ballistic deficits can be made negligibly small by choosing the shaping time about four-times the maximum electron collection time.
Alpha and Beta Adrenergic Effects on Human Atrial Specialized Conducting Fibers

We determined the effects of epinephrine on automaticity and action potential characteristics of right atrial specialized fibers (RAF) from human atria obtained during cardiac surgery. RAF were studied with standard microelectrode techniques during superfusion with Tyrode's solution at 37°C. A biphasic response to epinephrine was seen, rate slowing at low agonist concentrations and increasing at high concentrations. The epinephrine-induced slowing of spontaneous rate was due to a decrease in the slope of phase 4 depolarization. At the high epinephrine concentrations RAF hyperpolarized. The a-adrenergic blocker, phentolamine, shifted the dose-response curve upward and to the left and enhanced the hyperpolarization of RAF. The /3 blocker, propranolol, shifted the curve to the right and decreased the degree of hyperpolarization. Our study suggests the presence of a and, B receptors in RAF. The a response consists of a slowing of rate, the # response of an acceleration of rate and hyperpolarization of RAF.
Effect of vitiligo on self‐reported health‐related quality of life

Background Vitiligo is a pigmentary disorder affecting at least 1% of the total population. Although the disease does not produce direct physical impairment, it may considerably influence the psychological well‐being of the patients. It has been suggested that patients suffer from low self‐esteem, poor body image and a poor quality of life. The majority of the studies on the psychosocial impact of vitiligo were conducted in the U.S.A. and England.
[Relationship and clinical significance between mutated BRAF with prophylactic central-neck nodal dissection in papillary thyroid carcinoma].

OBJECTIVE To evaluate the molecular diagnosis marker of papillary thyroid carcinoma (PTC), the relationship between lymphatic metastasis of central neck compartment PTC, and the operation indication of prophylactic central neck dissection. METHODS We conducted a retrospective study, including 275 PTC patients and detected their BRAF mutation rates during 2012 and 2014 and explored the risk factors of the central node lymphatic metastasis by Logistic regression model. RESULTS Of the 275 PTC patients, 224 (81.5%) were female and 51 (18.5%) were male. BRAF mutational rates were 53.8% (148/275) and lymphatic metastasis 57.8% (159/275). Multivariate analysis showed calcification (OR(adjusted)=1.47, 95%CI: 1.10-1.98, P=0.01), tumor diameter (OR(adjusted)=1.48, 95%CI: 1.04-2.30, P=0.048) and age (OR(adjusted)=1.48, 95%CI: 1.04-2.30, P=0.048) were associated with lymphatic metastasis. In stratified analysis, BRAF mutation (OR(adjusted)=3.19, 95%CI: 1.18-9.43, P=0.023) in clear boarder group and BRAF mutation (OR(adjusted)=4.84, 95%CI: 1.68-13.84, P=0.003) in calcification group were more likely to have lymphatic metastases. CONCLUSION Central neck metastasis takes up a high ratio in papillary thyroid cancer patients, BRAF mutation in papillary thyroid carcinoma is a characteristic molecular event. Furthermore, patients with calcification under ultrasound detection, lower age group and longer tumor diameter are more susceptible to suffer central neck metastasis. Especially for stratified analysis, non-calcified BRAF mutation or BRAF mutation with clear border under ultrasound detection are more susceptible to suffer central neck metastasis, and radical prophylactic central neck dissection should be carried on for these patients.
Effect of inhaled hydrogen sulfide on metabolic responses in anesthetized, paralyzed, and mechanically ventilated piglets*

Objective: Induced hypometabolism may improve the balance between oxygen delivery and consumption and may help sustain tissue viability in critically ill patients with low cardiac output state. Inhaled hydrogen sulfide (H2S) has been shown to induce a suspended animation-like state in mice with a 90% decrease in oxygen consumption. We conducted a preclinical study to explore the potential effect of H2S on metabolic rate in large mammals. Design: Prospective study. Setting: Animal laboratory in a university hospital. Subjects: Eleven anesthetized, paralyzed, and mechanical ventilated piglets (5.8 ± 0.7 kg). Interventions: The right carotid artery and superior vena cava were cannulated for arterial pressure monitoring and blood gas sampling. Seven piglets were sequentially exposed to 20, 40, 60, and 80 ppm of H2S over a period of 6 hrs (each level for 1.5 hrs) (H2S group), and additionally four piglets were exposed to air over the same period (control group). Measurements and Main Results: Ambient temperature was fixed at 22°C throughout. Central body temperature, arterial pressure, and heart rate were continuously monitored. Oxygen consumption and carbon dioxide production were continuously measured using respiratory mass spectrometry. Cardiac output was calculated using the Fick principle. Central temperature and oxygen consumption significantly and linearly decreased over the H2S exposures (p < .0001 for both), the rates of which were significantly less compared with those in the control group (p < .01 for both). Mean arterial pressure increased significantly (p = .007), whereas heart rate (p = .14), cardiac output (p = .89), and lactate (p = .67) did not change significantly during H2S exposures in H2S group; all the variables decreased significantly in the control group (p < .01 for all), and p < . 01 by comparison with H2S group except for lactate (p = .05). Conclusions: H2S does not appear to have hypometabolic effects in ambiently cooled large mammals and conversely appears to act as a hemodynamic and metabolic stimulant.
Design of a standard Iranian protocol of Intravenous thrombolysis with tissue plasminogen activator: A national project

Standard protocols should be established for treating eligible stroke patients with tissue plasminogen activator (TPA) (recommendation class I, level of evidence B). The Iranian standard protocol of Intravenous Thrombolysis with recombinant Tissue Plasminogen Activator (IVTTPA) is the best possible and easy to use method for performing intravenous thrombolysis in Iran. This protocol overcomes problems and limitations of IVTTPA in Iran. The protocol achieves the best selection criteria and assessment method of IVTTPA for our residents and neurologists. This protocol was provided in Persian language and could be easily downloaded from Google site by writing Thrombolysis and Iran in Persian.
The angiotensin converting enzyme I/D polymorphism in long distance runners.

AIM There is an assumption that ACE I/D polymorphism represents one of the possible genetic factors that might be associated with sports excellence. Recent studies have identified an increased frequency of I allele in elite endurance athletes, long distance runners, rowers and mountaineers. The aim of this study was to test the hypothesis that the ACE I/D polymorphism is associated with enhanced endurance performance. METHODS We examined this hypothesis by determining ACE I/D allele frequency in 215 marathon runners, 222 half-marathon runners and 18 inline skaters classified by performance (marathon competition results). ACE genotype and allele frequencies were compared with 252 healthy controls. RESULTS ACE genotype frequency in the whole cohort did not differ from that in the sedentary controls (P < 0.56). However, there was an increase of the I/I genotype incidence amongst successful marathon runners scoring on places from 1st to 150th (P < 0.01). These findings were confirmed in the group of inline skaters, similarly demonstrating an increase of the I/I genotype (P < 0.01). There was no association found between half marathon runners and the ACE genotype (P < 0.59). CONCLUSIONS An excess of the I allele in long distance runners confirms the association between the ACE I/D polymorphism and endurance sports performance.
Comparison of the Efficacy of Iodine, Formalin, Salt, and Hydrogen Peroxide for Control of External Bacteria on Rainbow Trout Eggs

Abstract Two experiments were conducted in vivo with eggs of rainbow trout Oncorhynchus mykiss to compare the bactericidal ability of four common disinfectants. A third test compared bacterial abundance estimation methods for fish eggs (use of a vortex mixer for agitating an egg versus rolling the egg across a petri dish). In the first test, the number of colony forming units (CFU) counted on enriched Ordahl's agar with tobramycin (EOT) or trypticase soy agar (TSA) was compared among eggs treated with various doses of iodine, hydrogen peroxide, formalin, or rock salt. A treatment of 1,667 mg of formalin/L of water and all iodine, salt, and hydrogen peroxide treatments had significantly fewer bacteria on EOT than did controls, but CFU counts for a formalin treatment of 500 or 1,000 mg/L did not. All chemical treatments significantly reduced CFU counts on TSA relative to controls except salt at 0.030 mg/L and formalin at 500 mg/L. The least growth was observed on iodine-treated eggs. In the second experimen.
Influence of protein degradability in range supplements on abomasal nitrogen flow, nitrogen balance and nutrient digestibility.

Two metabolism trials were conducted with yearling steers fed mature native forage to measure the effect of supplemental protein degradability on selected metabolic variables. Supplements contained 40% crude protein equivalence. In Trial 1, four abomasal-cannulated steers weighing 290 to 379 kg were fed supplements containing the following N sources: (1) 15% corn, 85% urea (U); (2) 100% soybean meal (SBM); (3) 10% corn, 40% soybean meal, 50% urea (SBM-U) and (4) 14% corn, 36% blood meal, 50% urea (BM-U). Equal portions of the daily diet (2.2% of body weight) were fed every 2 h. Treatment differences were not significant for organic matter digestibility, abomasal organic matter flow, nonammonia N flow, feed N flow, bacterial N flow and efficiency of microbial protein synthesis. There was a positive (P less than .05) relationship between quantity of slowly degraded protein fed and nonammonia N flow (r = .97) or feed N flow (r = .98). Escape N was determined to be 21.5, 16.5 and 54.2% in SBM, SBM-U and BM-U supplements, respectively. In the second trial, no supplement, SBM, SBM-U and BM-U were fed in a N balance trial. Dry matter, crude protein and neutral detergent fiber digestibilities were higher (P less than .05) for steers fed supplemented diets. Acid detergent fiber digestibility was higher (P less than .05) for steers supplemented with SBM than steers fed the unsupplemented diets. Nitrogen retention was greater (P less than .05) for cattle fed SBM and BM-U than for cattle fed SBM-U or no supplement. (ABSTRACT TRUNCATED AT 250 WORDS)
SIZ1/SIZ2 Control of Chromosome Transmission Fidelity Is Mediated by the Sumoylation of Topoisomerase II

The Smt3 (SUMO) protein is conjugated to substrate proteins through a cascade of E1, E2, and E3 enzymes. In budding yeast, the E3 step in sumoylation is largely controlled by Siz1p and Siz2p. Analysis of Siz− cells shows that SUMO E3 is required for minichromosome segregation and thus has a positive role in maintaining the fidelity of mitotic transmission of genetic information. Sumoylation of the carboxy-terminus of Top2p, a known SUMO target, is mediated by Siz1p and Siz2p both in vivo and in vitro. Sumoylation in vitro reveals that Top2p is an extremely potent substrate for Smt3p conjugation and that chromatin-bound Top2p can still be sumoylated, unlike many other SUMO substrates. By combining mutations in the TOP2 sumoylation sites and the SIZ1 and SIZ2 genes we demonstrate that the minichromosome segregation defect and dicentric minichromosome stabilization, both characteristic for Smt3p–E3-deficient cells, are mediated by the lack of Top2p sumoylation in these cells. A role for Smt3p-modification as a signal for Top2p targeting to pericentromeric regions was suggested by an analysis of Top2p–Smt3p fusion. We propose a model for the positive control of the centromeric pool of Top2p, required for high segregation fidelity, by Smt3p modification.
Attitudes of teenagers toward sun exposure and sunscreen use.

A survey of 220 adolescents attending a multiphysician pediatric office in Virginia was conducted to determine the frequency with which they used sunscreens. Eighty-one percent of the teenagers in the study stated that they spent most weekends in the sun; however, only 9% always used sunscreen, while 33% never did. Factors found to be associated with increased sunscreen use included female sex (odds ratio = 4.5, P less than .0001), having a best friend who routinely used sunscreen (odds ratio = 3.0, P less than .001), having parents who insisted on sunscreen use when the teenagers were children (odds ratio = 3.0, P = .006), and knowing that the maximum time for safe exposure to the sun is short (odds ratio = 6.2, P less than .0001). Adolescents with a history of skin cancer in the family were not more likely to use sunscreens than other teenagers. Thirty-three percent of the girls and 16% of the boys older than 15 years of age reported that they had visited a tanning salon at least once. This survey substantiates poor compliance with sunscreen use by teenagers despite increasing evidence of the dangers of excessive sun exposure.
Retrospective Assessment of Islet Cell Autoantibodies in Pancreas Organ Donors

OBJECTIVE—Of deceased pancreas donors, 3–4% may have autoantibodies (AAb) to pancreatic islet cell antigens; these autoantibodies are well-established markers of type 1 diabetes. We investigated whether donor AAb positivity could affect the outcome of pancreas transplantation. RESEARCH DESIGN AND METHODS—We retrospectively tested AAb in 135 donors whose pancreata and kidneys were transplanted in type 1 diabetes patients. We measured AAb to glutamic acid decarboxylase (GAD-AAb), the tyrosine-phosphatase-like protein IA2 (IA2-AAb), and insulin (insulin-AAb). We then evaluated pancreas transplant outcome data. RESULTS—Four of 135 (2.96%) donors were AAb positive: three donors had GAD-AAb, and one donor had insulin-AAb. Their respective recipients became insulin independent on follow-up. Three of the four recipients had normal, insulin-producing grafts 3–5.8 years after transplant. The recipient of the insulin-AAb–positive donor pancreas developed chronic rejection following discontinuation of immunosuppression 3.3 years after transplant. CONCLUSIONS—Single AAb positivity did not affect the outcome of pancreas transplantation in our study.
Biosynthesis of dTDP-3-acetamido-3,6-dideoxy-α-D-galactose in Aneurinibacillus thermoaerophilus L420-91T*

The glycan chain of the S-layer protein of Aneurinibacillus thermoaerophilus L420-91T (DSM 10154) consists of d-rhamnose and 3-acetamido-3,6-dideoxy-d-galactose (d-Fucp3NAc). Thymidine diphosphate-activated d-Fucp3NAc serves as precursor for the assembly of structural polysaccharides in Gram-positive and Gram-negative organisms. The biosynthesis of dTDP-3-acetamido-3,6-dideoxy-α-d-galactose (dTDP-d-Fucp3NAc) involves five enzymes. The first two steps of the reaction are catalyzed by enzymes that are part of the well studied dTDP-l-rhamnose biosynthetic pathway, namely d-glucose-1-phosphate thymidyltransferase (RmlA) and dTDP-d-glucose-4,6-dehydratase (RmlB). The enzymes catalyzing the last three synthesis reactions have not been characterized biochemically so far. These steps include an isomerase, a transaminase, and a transacetylase. We identified all five genes involved by chromosome walking in the Gram-positive organism A. thermoaerophilus L420-91T and overexpressed the three new enzymes heterologously in Escherichia coli. The activities of these enzymes were monitored by reverse phase high performance liquid chromatography, and the intermediate products formed were characterized by 1H and 13C nuclear magnetic resonance spectroscopy analysis. Alignment of the newly identified proteins with known sequences revealed that the elucidated pathway in this Gram-positive organism may also be valid in the biosynthesis of the O-antigen of lipopolysaccharides of Gram-negative organisms. The key enzyme in the biosynthesis of dTDP-d-Fucp3NAc has been identified as an isomerase, which converts the 4-keto educt into the 3-keto product, with concomitant epimerization at C-4 to produce a 6-deoxy-d-xylo configuration. This is the first report of the functional characterization of the biosynthesis of dTDP-d-Fucp3NAc and description of a novel type of isomerase capable of synthesizing dTDP-6-deoxy-d-xylohex-3-ulose from dTDP-6-deoxy-d-xylohex-4-ulose.
Random Forest Algorithm for the Classification of Neuroimaging Data in Alzheimer's Disease: A Systematic Review

Objective: Machine learning classification has been the most important computational development in the last years to satisfy the primary need of clinicians for automatic early diagnosis and prognosis. Nowadays, Random Forest (RF) algorithm has been successfully applied for reducing high dimensional and multi-source data in many scientific realms. Our aim was to explore the state of the art of the application of RF on single and multi-modal neuroimaging data for the prediction of Alzheimer's disease. Methods: A systematic review following PRISMA guidelines was conducted on this field of study. In particular, we constructed an advanced query using boolean operators as follows: (“random forest” OR “random forests”) AND neuroimaging AND (“alzheimer's disease” OR alzheimer's OR alzheimer) AND (prediction OR classification). The query was then searched in four well-known scientific databases: Pubmed, Scopus, Google Scholar and Web of Science. Results: Twelve articles—published between the 2007 and 2017—have been included in this systematic review after a quantitative and qualitative selection. The lesson learnt from these works suggest that when RF was applied on multi-modal data for prediction of Alzheimer's disease (AD) conversion from the Mild Cognitive Impairment (MCI), it produces one of the best accuracies to date. Moreover, the RF has important advantages in terms of robustness to overfitting, ability to handle highly non-linear data, stability in the presence of outliers and opportunity for efficient parallel processing mainly when applied on multi-modality neuroimaging data, such as, MRI morphometric, diffusion tensor imaging, and PET images. Conclusions: We discussed the strengths of RF, considering also possible limitations and by encouraging further studies on the comparisons of this algorithm with other commonly used classification approaches, particularly in the early prediction of the progression from MCI to AD.
Antimicrobial activity of lactic acid bacteria and the spectrum of their biopeptides against spoiling germs in foods

The objective of this study was to isolate LAB from dairy, meat products and agro-industrial wastes and to investigate their antagonist activity. A total of 141 isolates were screened for the inhibitory effect on ten indicator strains in the agar spot test. Results showed that strain LBbb0141 contained antimicrobial compound with wide spectrum that inhibited the growth of ten indicator Gram-positive and Gram-negative strains. The bacteriocin activity attained its maximum value using the MRS agar at initial pH 7.5 and 30°C incubation temperature.