Miracle-dz/UniFAR-FTUs huggingface dataset:
Early and late neurodevelopmental influences in the prodrome to schizophrenia: contributions of genes, environment, and their interactions.

Both early (i.e., pre- and perinatal periods) and late (i.e., adolescent period) neurodevelopmental processes are thought to participate in the etiology and pathophysiology of schizophrenia. However, whether markers of these processes would be expected to predict an imminent onset of psychosis, as is hoped in the current generation of prodromal research programs, depends on whether their disruptions result from genetic factors shared by patients and some of their unaffected relatives, nongenetic factors specific to those who manifest the illness phenotype, or combinations of these sets of influences. Here we present recent work deriving primarily from high-risk and family-study (i.e., "genetic high-risk") designs, which provide a framework for investigating the neural changes that may occur proximally to the initial onset of psychosis. This work indicates that some of the alterations in brain function and structure in schizophrenia are primarily genetically mediated and also appear in some of patients' unaffected first degree relatives, while other alterations are present in individuals who manifest the illness phenotype but not in relatives at genetic risk (Cannon et al. 2002a, 2002c; Van Erp et al. 2002). Whereas the primarily genetically mediated deficits shared by at-risk but nonsymptomatic relatives are not likely to show differential change in the premorbid period and may be necessary but clearly not sufficient for the development of psychotic symptoms, the deficits specific to patients who manifest the illness phenotype are good candidates for marking the neurobiological processes associated with the emergence of psychotic symptoms at the time of schizophrenia onset. Preliminary results from longitudinal studies of individuals ascertained initially in a prodromal (i.e., "clinical high-risk") state appear to be interpretable within this framework. A number of questions arising from this line of inquiry need to be addressed in the current generation of prodromal research programs: To what extent do the neural systems affected by early and late neurodevelopmental influences overlap? Is there likely to be a schizophrenia-related disturbance in the processes associated with adolescent brain maturation, or are these maturational processes themselves intact, participating in psychosis onset only indirectly, by promoting a neurobiological context in which the early neurodevelopmental disturbances can be expressed in psychotic symptoms? What pattern of changes observable from in vivo imaging studies is consistent with a reduction in neuropil volume? We develop a framework for addressing these questions and evaluating their implications for understanding the roles of early and late neurodevelopmental influences in the etiology and pathophysiology of schizophrenia.
Decreasing incidence of pregnancy by decreasing CD4 cell count in HIV-infected women in Côte d'Ivoire: a 7-year cohort study

In a cohort study of women of childbearing age in Abidjan, Côte d'Ivoire, we followed 473 HIV-infected women for 1551 person-years, and found that the incidence of pregnancy and livebirth decreased with decreasing CD4 cell counts. This has consequences in terms of scaling-up strategies for highly active antiretroviral therapy (HAART). Women who need HAART will be less likely than those who do not to be recruited into prenatal care facilities.
[Prognostic significance of subchorionic hematoma for the course of pregnancy].

OBJECTIVES the aim of this retrospective study was to assess if a first trimester subchorionic hematoma (SCH) influences the pregnancy outcome and whether pv bleeding can be a prognostic factor for the pregnancy course. MATERIAL AND METHODS the study included 185 pregnant women hospitalized due to symptoms of a threatening miscarriage. Patients were divided into 2 groups: 119 women with SCH (study group) and 66 patients with normal prenatal scan (control group), further subdivided into cases with and without pv bleeding, irrespectively of the outcome of the ultrasound scan. Obstetric and neonatal data were analyzed. RESULTS 1. A pregnancy complicated by SCH is more often associated with a poor outcome -- 23.78% of the study group patients had a miscarriage versus 7.62% of the controls. 2. Pregnancy with SCH is more likely to be lost before 9 weeks of gestation. 3. The "N" ratio, that expresses the maximal length of the hematoma to the maximal length of the fetus, equal to 2.5 or more, is associated with a risk of miscarriage. 4. The surface area of SCH equal to 280mm(2) or more is more likely to reveal with vaginal bleeding. 5. Vaginal bleeding can be a prognostic factor for the mode of delivery -- a higher rate of the Cesarean section is observed in patients with pv bleeding. 6. SCH is a complication that occurs in older women, with the limit of 30 years of age. 7. In this study there were no significant correlations between subchorionic hematoma or pv bleeding and PTL, IUGR, PIH, abnormal volume of the amniotic fluid, parity and order of gestation and delivery CONCLUSIONS subchorionic hematoma can be associated with poor pregnancy outcome and the "N" index may be a useful predictor of the further course of a pregnancy Pv bleeding may be a prognostic factor for the delivery mode.
Inhibition of FGFR2 and FGFR1 increases cisplatin sensitivity in ovarian cancer

Fibroblast Growth Factors (FGFs) have been implicated in malignant transformation, tumour mitogenesis, angiogenesis and chemoresistance. The aim of this study was to determine which FGFs and FGFRs play functional roles in epithelial ovarian cancer. Restriction enzyme analysis of mRNA revealed that transformation was associated with a switch in FGFR2 and FGFR3, from the IIIc to the IIIb isoform. There was widespread expression of FGFs, including FGF7, in all tissues but, FGF3 and FGF19 were expressed by malignant cell lines and cancer tissue but were not present in normal tissue. Using FGFR-specific shRNAi we demonstrated that reductions in FGFR2 inhibited proliferation of ovarian cancer cell lines in vitro (>50%, p < 0.006), and reduced cisplatin IC50 (>60%, p < 0.0001). Cell cycle analysis revealed increased cisplatin sensitivity was associated with increased G2/M arrest and increased apoptosis. FGFR2 shRNAi reduced growth rates of ovarian tumour xenografts by 20% (p<0.006) and when combined with cisplatin caused a 40% reduction in proliferation rates (p<0.007). In contrast, RNAi-induced reductions in FGFR1 increased SKOV3 cell numbers, with associated changes in cell cycle but had no effect on ES2 cells. However, the cisplatin IC50 was reduced (>50%, p < 0.0001) by FGFR1 shRNAi in both cell lines and there was increased apoptosis (46-50%) compared with control cells (35%) (p < 0.004). Together our data suggest that combining FGFR2 inhibitors with platinum-containing cytotoxic agents for the treatment of epithelial ovarian cancer may yield increased anti-tumour activity. However, data on the inhibition of FGFR1 suggest that broad spectrum FGFR inhibitors may have unexpected effects on proliferation.
Lack of BRAF Activating Mutations in Prostate Adenocarcinoma: A Study of 93 Cases

Oncogenic activating mutations in the cytosolic serine/threonine kinase, BRAF, have been reported in a variety of neoplasms. BRAF relays signals from membrane-bound RAS downstream through the MAP/ERK (mitogen-activated protein kinase/extracellular signal-regulated kinase) signaling pathway. The presence of BRAF activating mutations suggests the importance of the MAP/ERK kinase pathway for tumor growth and points to possible therapeutic interventions. Recently, BRAF mutations were reported to characterize a series of prostate adenocarcinomas. In this study, we used DNA melting analysis with high-resolution technology to screen a series of 93 prostate carcinomas for BRAF mutations. None were found. This suggests that BRAF mutations may not play an important role in the oncogenesis or therapy of prostate adenocarcinoma.
Architecture of telomerase RNA.

Telomerase, an essential ribonucleoprotein reverse transcriptase, adds telomeric DNA to the ends of eukaryotic chromosomes. We examined the conformational properties of the naked RNA moiety of telomerase from two related ciliates, Tetrahymena thermophila and Glaucoma chattoni. As well as finding evidence for features proposed previously on the basis of phylogenetic comparisons, novel conserved structural properties were revealed. Specifically, although the region around helix III was previously proposed to form a pseudoknot, our results indicate that in the naked RNA this region maintains a level of ‘plasticity’, probably in an equilibrium favoring one of two helices. In addition, these studies reveal that the templating domain is not entirely single‐stranded as previously proposed, but is ordered due to constraints imposed by other parts of the RNA. Finally, our results suggest that the GA bulge in helix IV may introduce a structurally conserved kink. We now propose a ‘two‐domain’ structure for the telomerase RNA based on function: one conformationally flexible domain, which includes the template and the region around helix III, involved with enzymatic function, and a second largely helical domain, including helices I and IV and the proposed kink, which may serve as a scaffold for protein binding.
Bond strength of different veneering ceramics to zirconia and their susceptibility to thermocycling.

PURPOSE To evaluate the bond strength of recently developed feldspathic veneering ceramics to zirconium-oxide ceramic core material (Y-TZP). In addition, the effect of thermocycling on the bond strength was investigated. METHODS 90 square Lava framework Y-TZP specimens were randomly assigned to three groups (n = 30) and veneered with one of the three zirconia veneering ceramics Cerabien ZR (CZR), GC Initial (GCI), or Lava Ceram (LC). 30 additional metal-ceramic specimens served as the control (VO). 15 specimens per group were stored in a saline solution for 3 days. To test the durability of the bond, 15 specimens per group were thermocycled for 10,000 cycles between 5 degrees to 60 degrees C with a 15-second dwell time. Shear strength was tested with an Instron universal testing system. A two-way ANOVA model and Tukey's HSD were applied for statistical analyses (alpha = 0.05). RESULTS The different material combinations revealed significantly different shear bond strength values (CZR > GCI > LC > VO). All veneering ceramic/zirconia combinations showed significantly higher bond strength than the metal-ceramic control VO. Bond strength values were not affected by thermocycling, except for CZR, which had significantly higher bond strength after thermocycling. Microscopic evaluation of failure modes revealed 100% cohesive failures in the veneering ceramic for all specimens.
The pulsation-rotation interaction: Greatest hits and the B-side

Abstract It has long been known that rotation can have an appreciable impact on stellar pulsation — by modifying the usual p and g modes found in the non-rotating case, and by introducing new classes of modes. However, it's only relatively recently that advances in numerical simulations and complementary theoretical treatments have enabled us to model these phenomena in any great detail. In this talk I'll review highlights in this area (the ‘Greatest Hits’), before considering the flip side (or the ‘B-side’, for those of us old enough to remember vinyl records) of the pulsation-rotation interaction: how pulsation can itself influence internal rotation profiles.
Positive parenting and children's prosocial behavior in eight countries.

BACKGROUND Research supports the beneficial role of prosocial behaviors on children's adjustment and successful youth development. Empirical studies point to reciprocal relations between negative parenting and children's maladjustment, but reciprocal relations between positive parenting and children's prosocial behavior are understudied. In this study reciprocal relations between two different dimensions of positive parenting (quality of the mother-child relationship and the use of balanced positive discipline) and children's prosocial behavior were examined in Colombia, Italy, Jordan, Kenya, the Philippines, Sweden, Thailand, and the United States. METHODS Mother-child dyads (N = 1105) provided data over 2 years in two waves (Mage of child in wave 1 = 9.31 years, SD = 0.73; 50% female). RESULTS A model of reciprocal relations between parenting dimensions, but not among parenting and children's prosocial behavior, emerged. In particular, children with higher levels of prosocial behavior at age 9 elicited higher levels of mother-child relationship quality in the following year. CONCLUSIONS Findings yielded similar relations across countries, evidencing that being prosocial in late childhood contributes to some degree to the enhancement of a nurturing and involved mother-child relationship in countries that vary widely on sociodemographic profiles and psychological characteristics. Policy and intervention implications of this study are discussed.
Demographic, clinical and laboratory features of leptospirosis and dengue co‐infection in Malaysia

Purpose. In this study, we aim to describe and compare the demographical, clinical and laboratory features of leptospirosis and dengue co‐infections (LDCI) against single leptospirosis infections in Malaysia. Methodology. Data of patients admitted to various hospitals in Malaysia from 2011 to 2015 diagnosed with leptospirosis in our laboratory were obtained from their admission records. Co‐infection with dengue was determined by collecting dengue serology results. Multivariate analysis and multiple logistic regression were used to differentiate features between single leptospirosis infection and confirmed LDCI. Results/Key findings. Only 602 (29.11 %) out of 2068 leptospira‐positive patients were concurrently tested for dengue during their admission in which 44 (7.31 %) patients had positive non‐structural protein 1 (confirmed LDCI) while 140 (23.26 %) were positive for dengue IgM (probable LDCI) with the highest number of cases recorded in high‐density suburban districts. Myalgia and arthralgia were the only significant distinguishing clinical feature of LDCI while significant laboratory features were thrombocytopenia and high levels of alanine and aspartate transaminases. Only thrombocytopenia displayed a predictive value for LDCI from analysis of multiple logistic regression. Death occurred in 19 (3.16 %) patients in this dataset studied but only three (0.50 %) were attributed to LDCI. Conclusion. There is a considerable prevalence of LDCI in this country of which overlapping demographic, clinical and laboratory presentations pose diagnostic and therapeutic challenges. Efforts to raise awareness regarding LDCI, better access to diagnostic services and further prospective studies are warranted.
The presence and severity of cerebral small vessel disease increases the frequency of stroke in a cohort of patients with large artery occlusive disease

Background Cerebral small vessel disease (SVD) commonly coexists with large artery atherosclerosis (LAA). Aim We evaluate the effect of SVD on stroke recurrence in patients for ischemic stroke with LAA. Methods We consecutively collected first-ever ischemic stroke patients who were classified as LAA mechanism between Jan 2010 and Dec 2013. Univariate and multivariate Cox analyses were performed to evaluate the association between the 2-year recurrence and demographic, clinical, and radiological factors. To evaluate the impact of SVD and its components on recurrent stroke, we used the Kaplan-Meier analysis. SVD was defined as the presence of severe white matter hyperintensity (WMH) or old lacunar infarction (OLI) or cerebral microbleeds (CMB). We also compared frequency and burden of SVD among recurrent stroke groups with different mechanisms. Results Among a total of 956 participants, 92 patients had recurrent events. Recurrence group showed a higher frequency of severe WMH, OLI, asymptomatic territorial infarction, and severe stenosis on the relevant vessel in multivariate analysis. The impact of SVD and its components on recurrent stroke was significant in any ischemic recurrent stroke, and the presence of SVD was continuously important in stroke recurrence regardless of its mechanism, including recurrent LAA stroke, recurrent small vessel occlusion stroke, and even recurrent cardioembolic stroke. Additionally, the recurrence rate increased in dose-response manner with the increased number of SVD components. Conclusions Cerebral SVD is associated with recurrent stroke in patients with LAA. Additionally, it may affect any mechanisms of recurrent stroke and even with a dose response manner.
What Is the Bioeconomy? A Review of the Literature

The notion of the bioeconomy has gained importance in both research and policy debates over the last decade, and is frequently argued to be a key part of the solution to multiple grand challenges. Despite this, there seems to be little consensus concerning what bioeconomy actually implies. Consequently, this paper seeks to enhance our understanding of what the notion of bioeconomy means by exploring the origins, uptake, and contents of the term “bioeconomy” in the academic literature. Firstly, we perform a bibliometric analysis that highlights that the bioeconomy research community is still rather fragmented and distributed across many different fields of science, even if natural and engineering sciences take up the most central role. Secondly, we carry out a literature review that identifies three visions of the bioeconomy. The bio-technology vision emphasises the importance of bio-technology research and application and commercialisation of bio-technology in different sectors of the economy. The bio-resource vision focuses on processing and upgrading of biological raw materials, as well as on the establishment of new value chains. Finally, the bio-ecology vision highlights sustainability and ecological processes that optimise the use of energy and nutrients, promote biodiversity, and avoid monocultures and soil degradation.
Active case finding for pulmonary tuberculosis using mobile digital chest radiography: an observational study.

BACKGROUND Mobile digital chest radiography (CXR) is used routinely to screen for pulmonary tuberculosis (PTB) in London among homeless populations, persons accessing drug treatment services and prisoners. OBJECTIVE 1) To establish the sensitivity and specificity of mobile digital CXR, and 2) to test the hypothesis that actively identified cases have reduced odds of sputum smear positivity vs. those presenting passively to health care services from the same populations. METHODS Sensitivity and specificity were calculated using a gold standard comparator of culture-confirmed cases of PTB reported to the national surveillance system within 90 days of screening. Logistic regression was used to determine whether actively detected cases had reduced odds of smear positivity compared to passively detected cases after adjustment for confounding. RESULTS The intervention had a sensitivity of 81.8% (95%CI 64.5-93.0) and a specificity of 99.2% (95%CI 99.1-99.3). After adjusting for confounding, there was evidence that cases identified through screening were less likely to be smear-positive than passively identified cases (OR 0.34, 95%CI 0.14-0.85; likelihood ratio test P = 0.022). CONCLUSION Digital CXR achieves a high level of sensitivity and specificity in an operational setting; targeted mobile radiographic screening can reduce the risk of onward transmission by identifying cases before they become infectious.
Analysis of the promoter from an expanding mouse retrotransposon subfamily.

The mouse genome contains several subfamilies of the retrotransposon L1. One subfamily, TF, contains 4000-5000 full-length members and is expanding due to retrotransposition of a large number of active elements. Here we studied the TF 5' untranslated region (UTR), which contains promoter activity required for subfamily expression. Using reporter assays, we show that promoter activity is derived from TF-specific monomer sequences and is proportional to the number of monomers in the 5' UTR. These data suggest that nearly all full-length TF elements in the mouse genome are currently competent for expression. We aligned the sequences of 53 monomers to generate a consensus TF monomer and determined that most TF elements are truncated near a potential binding site for a transcription initiation factor. We also determined that much of the sequence variation among TF monomers results from transition mutations at CpG dinucleotides, suggesting that genomic TF 5' UTRs are methylated at CpGs.
Oral contraceptives and venous thromboembolism: findings in a large prospective study.

This article reports recent data from the Oxford-Family Planning Association study on oral contraceptives (OCs) and venous thromboembolism. 105 of the over 17000 women in the study suffered a 1st attack of venous thromboembolism uanassociated with pregnancy or the puerperium during the study period. This group was subdivided into 34 women who developed disease within 3 months after a surgical procedure and 71 women suffering thromboembolism unassociated with surgery. The incidence of postoperative thromboembolism in women who used OCs in the month before surgery was almost twice as high as that in nonusers but the difference was not significant. The group of women who became ill independently of surgery was divided into 3 diagnostic categories: certain or probable deep vein thrombosis pulmonary embolism or both; possible deep vein thrombosis pulmonary embolism or both; and superficial venous thrombosis only. There was a strong association between current OC use and certain or probable venous thromboembolism (relative risk 7.2) a weaker association with possible thromboembolism (relative risk 3.1) and little or no association with superficial venous thrombosis (relative risk 1.4). There was no significant association between risk and duration of OC use. The crude incidence of certain or probable thromboembolism/1000 woman-years was 0.62 in women using OCs containing 50 mcg or more of estrogen and 0.39 in those using preparations containing less than 50 mcg of estrogen. These findings are consistent with those obtained in other major studies in this area.
Humoral Immunity in Bronchiectasis: Finding Good's Syndrome

We present a case of a 37-year-old man with a past history of a surgically removed thymoma, who presented with recurrent pulmonary infections and bronchiectasis. On further testing, he was found to have low total immunoglobulin levels, a constellation of findings known as Good's syndrome. He responded well to immunoglobulin replacement, in addition to the usual treatments for bronchiectasis. We present this case to emphasize the association of bronchiectasis, low immunoglobulins, and thymomas and the role of immunoglobulin replacement as a treatment option.