Miracle-dz/UniFAR-FTUs huggingface dataset:
A new method for the assessment of the surface topography of NiTi rotary instruments

AIM To describe a new method for the assessment of nanoscale alterations in the surface topography of nickel-titanium endodontic instruments using a high-resolution optical method and to verify the accuracy of the technique. METHODOLOGY Noncontact three-dimensional optical profilometry was used to evaluate defects on a size 25, . 08 taper reciprocating instrument (WaveOne® ), which was subjected to a cyclic fatigue test in a simulated root canal in a clear resin block. For the investigation, an original procedure was established for the analysis of similar areas located 3 mm from the tip of the instrument before and after canal preparation to enable the repeatability and reproducibility of the measurements with precision. All observations and analysis were taken in areas measuring 210 × 210 μm provided by the software of the equipment. RESULTS The three-dimensional high-resolution image analysis showed clear alterations in the surface topography of the examined cutting blade and flute of the instrument, before and after use, with the presence of surface irregularities such as deformations, debris, grooves, cracks, steps and microcavities. CONCLUSIONS Optical profilometry provided accurate qualitative nanoscale evaluation of similar surfaces before and after the fatigue test. The stability and repeatability of the technique enables a more comprehensive understanding of the effects of wear on the surface of endodontic instruments.
Multiresidue determination of pesticide residues in honey by modified QuEChERS method and gas chromatography with electron capture detection

Honey can present pesticide residues due to the contamination of bees during the collection of pollen and nectar or by treatment of hives. Thus, the determination of pesticide residues in honey is of great importance, despite the difficulty due to the complexity of the matrix. In this study a new method for the determination of pesticides from different chemical groups in honey was developed and validated. Honey samples were extracted by modified QuEChERS method and analyzed by gas chromatography with electron capture detection (GC-ECD). Recovery results, evaluated at three spike levels, were between 71 and 119% for most of the compounds, with relative standard deviation (RSD) < 20%. The proposed method enables the determination at limits of detection between 3 and 6 µg kg-1, combining effective extraction and clean-up steps with good sensitivity and selectivity, and was successfully applied to the analysis of commercial honey samples.
Magnetic Resonance Characterization of Pheochromocytomas in the Abdomen and Pelvis: Imaging Findings in 18 Surgically Proven Cases

Purpose: To study the magnetic resonance imaging characteristics of adrenal and extra-adrenal pheochromocytomas in the abdomen and pelvis. Methods: We retrospectively reviewed 18 cases of pathologically proven cases of pheochromocytomas in the abdomen and pelvis. These patients have undergone magnetic resonance imaging evaluation before surgery. The study population included 10 men and 7 women (age range, 19-68 years; mean, 38 years). A consensus review of the magnetic resonance images was performed by 2 blinded expert observers. A qualitative evaluation was completed, and the tumors were classified by anatomical location, shape, T2 signal, contrast enhancement, and signal dropout on chemical shift pulse sequences. Results: On T2-weighted images, most lesions demonstrated mild to moderate increased signal intensity (SI) (n = 12), 5 lesions demonstrated a markedly increased SI, and only 1 lesion demonstrated an isointense SI on T2-weighted images. Five lesions demonstrated marked postcontrast enhancement. Three lesions demonstrated moderate enhancement, and 5 lesions demonstrated mild postcontrast enhancement. The pattern of enhancement was variable: 4 salt and pepper, 4 homogeneous, 3 heterogeneous, and 2 target with central necrosis and hemorrhage. None of the lesions contained significant amount of intracellular lipid, as no lesions demonstrated greater than 16.5% signal dropout on out-of-phase compared with in-phase pulse sequences.
Finite volume modelling of stencil printing process

Nowadays, stencil printing process has become one of the most crucial steps in the continuously developing reflow soldering technology. In this research, the process of stencil printing was modelled with Finite Volume Method. The geometrical model consists of the squeegee with attack angle of 60°, the stencil and the solder paste as the domain of interest. During the modelling, the flow field inside the paste and the pressure distribution along the stencil surface were calculated. The effect of various types of meshes (quadrilateral, triangular, unstructured and polar) on the calculation speed and accuracy was investigated. The calculation error was determined by contrasting the results to an analytical model which is available for liquids with Newtonian properties. Although solder pastes are non-Newtonian liquids, comparing numerical models to analytical models provides the most reliable validation. Finally, the FVM model with non-Newtonian solder paste properties were compared to the results of Newtonian modelling.
DESARROLLO TECNOLÓGICO EN LA PRIMERA REVOLUCIÓN INDUSTRIAL

La Revolucion Industrial no cabe entenderla como un cambio subito y radical, sino mas bien como un proceso no exento de tensiones, que se fue consolidando con el transcurso de los anos y tuvo en Inglaterra su referencia principal. Ese tiempo largo en su afirmacion no oscurecio sus consecuencias. Y es que los cambios tecnologicos introducidos poeta Revolucion Industrial supusieron una ruptura con el pasado morbo mas drastica que cualquier otra desde la invencion de la rueda.
Transplantation with autologous bone marrow‐derived mesenchymal stem cells for alcoholic cirrhosis: Phase 2 trial

Bone marrow‐derived mesenchymal stem cell (BM‐MSC) transplantation has been suggested as an effective therapy for liver cirrhosis. The efficacy and safety of autologous BM‐MSC transplantation in the treatment of alcoholic cirrhosis were investigated. Seventy‐two patients with baseline biopsy‐proven alcoholic cirrhosis who had been alcohol‐abstinent for more than 6 months underwent a multicenter, randomized, open‐label, phase 2 trial. Patients were randomly assigned to three groups: one control group and two autologous BM‐MSC groups that underwent either one‐time or two‐time hepatic arterial injections of 5 × 107 BM‐MSCs 30 days after BM aspiration. A follow‐up biopsy was performed 6 months after enrollment, and adverse events were monitored for 12 months. The primary endpoint was improvement in fibrosis quantification based on picrosirius red staining. The secondary endpoints included liver function tests, Child‐Pugh score, and Model for End‐stage Liver Disease score. Outcomes were analyzed by per‐protocol analysis. In terms of fibrosis quantification (before versus after), the one‐time and two‐time BM‐MSC groups were associated with 25% (19.5 ± 9.5% versus 14.5 ± 7.1%) and 37% (21.1 ± 8.9% versus 13.2 ± 6.7%) reductions in the proportion of collagen, respectively (P < 0.001). In the intergroup comparison, two‐time BM‐MSC transplantation in comparison with one‐time BM‐MSC transplantation was not associated with improved results in fibrosis quantification (P > 0.05). The Child‐Pugh scores of both BM‐MSC groups (one‐time 7.6 ± 1.0 versus 6.3 ± 1.3 and two‐time 7.8 ± 1.2 versus 6.8 ± 1.6) were also significantly improved following BM‐MSC transplantation (P < 0.05). The proportion of patients with adverse events did not differ among the three groups. Conclusion: Autologous BM‐MSC transplantation safely improved histologic fibrosis and liver function in patients with alcoholic cirrhosis. (Hepatology 2016;64:2185‐2197)
General and specific effects of lexicon in grammar: determiner and object pronoun omissions in child Spanish.

PURPOSE This study explores the hypothesis that vocabulary growth can have 2 types of effects in morphosyntactic development. One is a general effect, where vocabulary growth globally determines utterance complexity, defined in terms of sentence length and rates of subordination. There are also specific effects, where vocabulary size has a selective impact on the acquisition of grammatical markers and where lexicon is a prerequisite for typological convergence. The study compares the differential effects of vocabulary in 2 measures of morphosyntactic development: omissions of object clitic pronouns and definite articles. METHOD Correlation analysis and structural equation models were used to analyze the statistical effects of measures of vocabulary and grammatical development in 110 Spanish-speaking monolingual children ages 3-5 years. RESULTS The data revealed general effects of vocabulary growth on utterance length and subordination rates and on the use of definite determiners and object pronouns. Specific effects of vocabulary growth were identified for object pronouns but not for determiners. CONCLUSIONS The study found support for a 2-dimensional model separating lexicon and syntax and for 2 types of relationships. Vocabulary development generally determines sentence complexity and further evidence for specific effects in object pronoun use.
Hand-to-foot bioelectrical impedance analysis to measure fat mass in healthy children: A comparison with air-displacement plethysmography.

AIM To identify children at risk of overweight, assessing children's body composition in a valid way is crucial. The present cross-sectional study examines the comparability of children's fat mass percentage obtained by hand-to-foot bioelectrical impedance analysis (BIA) versus BodPod air-displacement plethysmography as a reference method. METHODS The body composition of 206 Belgian children (7-13 years; 7.7% overweight) was measured with BodPod and hand-to-foot BIA (Tanita BC418 with built-in formula). RESULTS Overall, comparability was the highest in girls. Good ranking agreement (rho = 0.819) and interchangeability (intra-class correlation (ICC) = 0.757) were found in girls but not in boys (rho = 0.568; ICC = 0.512). Although bioelectrical impedance resulted in an overall overestimation of only 0.5 fat%, it underestimated and overestimated fat% in children with, respectively, higher and lower fat%. The 95% limits of agreement distance was around 17 fat%, and there was a significant difference from the line of identity (intercept ≠ 0; slope ≠ 1). CONCLUSIONS Despite good ranking agreement, the use of BIA as an alternative for the BodPod is not recommended because of over-/underestimation and wide limits of agreement. It is not possible to calculate a simple correction factor for the whole fat% range to make the two approaches interchangeable.
Cyclic Testing of 3 All-Inside Meniscal Repair Devices

Background Despite the growing popularity of all-inside meniscal repair devices, concerns remain about their fixation strength. It is also unclear which of these devices have the most ideal biomechanical properties. Purpose To compare the biomechanical properties of 3 all-inside meniscal repair devices: the Meniscal Cinch, Ultra FAST-FIX, and MaxFire. Study Design Controlled laboratory study. Methods Twenty-seven human cadaveric menisci (3 groups of 9) were repaired using 3 different meniscal repair devices. The repaired menisci were then subjected to cyclic loading and load-to-failure testing. Gap formation and ultimate load to failure were measured. Results Six of the devices failed during cyclic testing, 4 in the MaxFire group (44%), 1 in the Ultra FAST-FIX group (11%), and 1 in the Meniscal Cinch group (11%). After 1 cycle, there was a trend toward larger gap formation in the MaxFire group (3.65 mm) compared with the Meniscal Cinch group (2.12 mm, P = .05). After 100 cycles, group differences were found in gap formation (P = .03), with the MaxFire group exhibiting greater displacement (6.70 mm) than the Ultra FAST-FIX group (3.59 mm). After 500 cycles, group differences in gap formation (Meniscal Cinch, 5.94; Ultra FAST-FIX, 4.74 mm; Max Fire, 7.19 mm) did not reach statistical significance (P = .20). A trend was found toward higher ultimate load to failure in the Ultra FAST-FIX (86.1 N) and Meniscal Cinch (85.3 N) groups compared with the MaxFire group (64.5 N, P = .06). Stiffness was also higher in the Ultra FAST-FIX (25.2 N/mm) and Meniscal Cinch (25.5 N/mm) groups than the MaxFire group (16.3 N/mm, P = .02). Conclusion The Meniscal Cinch and Ultra FAST-FIX devices have more desirable biomechanical properties than the MaxFire as demonstrated by higher stiffness and a lower failure rate during cyclic testing. Clinical Relevance The Meniscal Cinch and Ultra FAST-FIX devices may be more desirable implants for use during all-inside meniscal repair as they have superior biomechanical properties when compared with the MaxFire device.
The Conformational Change Responsible for AT1 Receptor Activation Is Dependent upon Two Juxtaposed Asparagine Residues on Transmembrane Helices III and VII*

A model of the angiotensin AT1 receptor and site-directed mutagenesis were used to identify key residues involved in ligand binding. Receptors were stably expressed in human embryonic kidney 293 cells, and their binding properties compared. Wild type receptors exhibited low and high affinity binding sites for peptides. Substitution of Asn111, situated in the third transmembrane helix, resulted in a significant alteration in ligand binding with only high affinity binding of the peptides, angiotensin II, angiotensin III, and [p-amino-Phe6]angiotensin II and a marked loss in the binding affinity of the AT1 receptor selective non-peptide antagonist losartan. From our model it was apparent that Asn111 was in close spatial proximity to Asn295 in the seventh transmembrane helix. Substitution of Asn295, produced identical changes in the receptor's pharmacological profile. Furthermore, the Ser111AT1A and Ser295AT1A mutants did not require the association of a G-protein for high affinity agonist binding. Finally, the Ser295AT1A mutant maintained higher basal generation of inositol trisphosphate than the wild type, indicating constitutive activation. We propose that substitution of these residues causes the loss of an interaction between transmembrane helices III and VII, which allows the AT1 receptor to “relax” into its active conformation.
Participation of Acetylpseudouridine in the Synthesis of a Peptide Bond in Vitro(*)

Uracil, uridine, and pseudouridine were acetylated by refluxing in acetic anhydride, and the products of acetylation were incubated with a synthetic peptide(1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21) that corresponds to the N-terminal 21 amino acid residues of human myelin basic protein. Peptide bond formation, at the N terminus in peptide 1-21, was obtained with acetyluracil and acetylpseudouridine, but not with acetyluridine. Transfer of an acetyl group from acetyluracil and acetylpseudouridine depended on acetylation in the N-heterocycle. X-ray crystallographic analysis definitively established N-1 as the site of acetylation in acetyluracil. Mass spectrometry of the acetylation products showed that one acetyl group was transferred to peptide 1-21, in water, by either acetyluracil or acetylpseudouridine at pH 6. Release of the acetyl group by acylaminopeptidase regenerated peptide 1-21 (mass spectrometry) and automated sequencing (for five cycles) of the regenerated (deacetylated) peptide demonstrated that the N terminus was intact. The findings are discussed in the context of a possible role for pseudouridine in ribosome-catalyzed peptidyltransfer, with particular reference being made to similarities between the possible mechanism of acyl transfer by acetyluracil/pseudouridine and the mechanism of carboxyl transfer by carboxylbiotin in acetyl CoA carboxylase. The possibility that idiosyncratic appearance of a wide range of acyl substituents in myelin basic protein could be related to a peculiar involvement of ribosomal pseudouridine is mentioned.
A comparison of the antimicrobial effects of four silver-containing dressings on three organisms.

OBJECTIVE To compare the antimicrobial activity of four silver-containing dressings: Acticoat (Smith and Nephew), Actisorb Silver 220 (Johnson and Johnson), Avance (SSL International) and Contreet-H (Coloplast). METHOD The dressings were tested against three micro-organisms: a Gram-positive bacterium, Staphylococcus aureus; a Gram-negative organism, Escherichia coli; and a yeast, Candida albicans, using three different techniques. Each dressing also had its silver content analysed. RESULTS Acticoat is likely to produce the most rapid antimicrobial effect in vitro because of the rapid release of relatively large concentrations of highly active silver ions. Contreet-H has broadly similar antimicrobial activity to Acticoat, but has a slower onset of action. Actisorb Silver 220 appears to offer less prospect of killing bacteria within the wound itself, but the dressing is capable of removing micro-organisms from wound exudate and sequestering them until they are inactivated by the silver within the charcoal fibres. Little convincing evidence for any antimicrobial activity of Avance was found. CONCLUSION Although caution must always be exercised when extrapolating the results of laboratory-based studies to the clinical situation, potentially important differences were detected in the antimicrobial activity of the four products examined. It is also possible that the silver ions released by the dressings may have effects on wound healing that are unrelated to their antimicrobial activity. Further work is needed to address this issue.
Chondrodermatitis nodularis chronica helicis; report of ninety-four cases and survey of literature, with emphasis upon pathogenesis and treatment.

THE PURPOSE of this paper is to report a survey of 94 cases of chondrodermatitis nodularis chronica helicis observed at this center over a period of six years and to present our concept of the pathogenesis and treatment of this condition. REVIEW OF THE LITERATURE Clinical Description. —Winkler, 1 in 1916, first described this condition under the title mentioned and presented eight cases. It was his impression that it represented an entity, and he characterized it as a small painful nodule on the ear, having a distinctive pathologic picture. The helix, specifically, was the site of involvement in all his cases. The lesions were "cherry seed" in size and had a firmly attached, centrally located crust. Intense pain was elicited when he attempted to remove this crust, and its removal revealed a small, well-defined ulcer with an erythematous base. The remainder of the nodule was the color of the
Tay-Sachs disease--carrier screening, prenatal diagnosis, and the molecular era. An international perspective, 1970 to 1993. The International TSD Data Collection Network.

OBJECTIVES To provide an update of the international experience with carrier screening and prenatal diagnosis for Tay-Sachs disease (TSD), to assess the impact of these efforts, and to review the recent developments in DNA technology with application to TSD carrier detection and screening. DESIGN Through the International TSD Testing, Quality Control, and Data Collection Center, all testing centers in the world were surveyed annually to assess overall experience with carrier testing and prenatal diagnosis. Quality control and laboratory surveillance of testing centers were performed through an annual assessment, using samples provided by the center. SETTING Tay-Sachs disease testing centers around the world. PARTICIPANTS Nearly 1 million young adults from both Jewish and non-Jewish populations. INTERVENTION Gene product screening (enzyme testing) and DNA-based mutation analysis (in some populations). MAIN OUTCOME MEASURE Impact of screening program on disease incidence. RESULTS Data from all centers in the international TSD network on experience with TSD carrier testing and prenatal diagnosis since 1974 indicated that more than 36,000 heterozygotes were identified and 1056 couples found to be at risk for TSD in their offspring. A total of 2416 pregnancies at increased risk for TSD were monitored by amniocentesis or chorionic villus sampling. A dramatic decrease in the incidence of TSD in the Jewish populations was demonstrated. With both serum and leukocyte proficiency testing, there have been only 16 instances (of 845 cumulative laboratory evaluations) of one or more errors reported by a laboratory since 1983 resulting in nonaccreditation. CONCLUSIONS This analysis represents a prototypic effort in coordinating adult education, carrier testing, and genetic counseling directed toward prospective prevention of a uniformly fatal childhood disease and demonstrates that such an effort can dramatically affect disease incidence.
Precision Medicine in Children and Young Adults with Hematologic Malignancies and Blood Disorders: The Columbia University Experience

Background The advent of comprehensive genomic profiling has markedly advanced the understanding of the biology of pediatric hematological malignancies, however, its application to clinical care is still unclear. We present our experience integrating genomic data into the clinical management of children with high-risk hematologic malignancies and blood disorders and describe the broad impact that genomic profiling has in multiple aspects of patient care. Methods The Precision in Pediatric Sequencing Program at Columbia University Medical Center instituted prospective clinical next-generation sequencing (NGS) for high-risk malignancies and blood disorders. Testing included cancer whole exome sequencing (WES) of matched tumor-normal samples or targeted sequencing of 467 cancer-associated genes, when sample adequacy was a concern, and tumor transcriptome (RNA-seq). A multidisciplinary molecular tumor board conducted interpretation of results and final tiered reports were transmitted to the electronic medical record according to patient preferences. Results Sixty-nine samples from 56 patients with high-risk hematologic malignancies and blood disorders were sequenced. Patients carried diagnoses of myeloid malignancy (n = 25), lymphoid malignancy (n = 25), or histiocytic disorder (n = 6). Six patients had only constitutional WES, performed for a suspicion of an inherited predisposition for their disease. For the remaining 50 patients, tumor was sequenced with matched normal tissue when available. The mean number of somatic variants per sample was low across the different disease categories (2.85 variants/sample). Interestingly, a gene fusion was identified by RNA-seq in 58% of samples who had adequate RNA available for testing. Molecular profiling of tumor tissue led to clinically impactful findings in 90% of patients. Forty patients (80%) had at least one targetable gene variant or fusion identified in their tumor tissue; however, only seven received targeted therapy. Importantly, NGS findings contributed to the refinement of diagnosis and prognosis for 34% of patients. Known or likely pathogenic germline alterations were discovered in 24% of patients involving cancer predisposition genes in 12% of cases. Conclusion Incorporating whole exome and transcriptome profiling of tumor and normal tissue into clinical practice is feasible, and the value that comprehensive testing provides extends beyond the ability to target-specific mutations.
The Naturally Attenuated Kunjin Strain of West Nile Virus Shows Enhanced Sensitivity to the Host Type I Interferon Response

ABSTRACT The host determinants that contribute to attenuation of the naturally occurring nonpathogenic strain of West Nile virus (WNV), the Kunjin strain (WNVKUN), remain unknown. Here, we show that compared to a highly pathogenic North American strain, WNVKUN exhibited an enhanced sensitivity to the antiviral effects of type I interferon. Our studies establish that the virulence of WNVKUN can be restored in cells and mice deficient in specific interferon regulatory factors (IRFs) or the common type I interferon receptor. Thus, WNVKUN is attenuated primarily through its enhanced restriction by type I interferon- and IRF-3-dependent mechanisms.