Miracle-dz/UniFAR-FTUs huggingface dataset:
Two regulatory RNA elements affect TisB‐dependent depolarization and persister formation

Bacterial survival strategies involve phenotypic diversity which is generated by regulatory factors and noisy expression of effector proteins. The question of how bacteria exploit regulatory RNAs to make decisions between phenotypes is central to a general understanding of these universal regulators. We investigated the TisB/IstR‐1 toxin‐antitoxin system of Escherichia coli to appreciate the role of the RNA antitoxin IstR‐1 in TisB‐dependent depolarization of the inner membrane and persister formation. Persisters are phenotypic variants that have become transiently drug‐tolerant by arresting growth. The RNA antitoxin IstR‐1 sets a threshold for TisB‐dependent depolarization under DNA‐damaging conditions, resulting in two sub‐populations: polarized and depolarized cells. Furthermore, our data indicate that an inhibitory 5′ UTR structure in the tisB mRNA serves as a regulatory RNA element that delays TisB translation to avoid inappropriate depolarization when DNA damage is low. Investigation of the persister sub‐population further revealed that both regulatory RNA elements affect persister levels as well as persistence time. This work provides an intriguing example of how bacteria exploit regulatory RNAs to control phenotypic heterogeneity.
Youth problem behaviors 8 years after implementing the communities that care prevention system: a community-randomized trial.

IMPORTANCE Community-based efforts to prevent adolescent problem behaviors are essential to promote public health and achieve collective impact community wide. OBJECTIVE To test whether the Communities That Care (CTC) prevention system reduced levels of risk and adolescent problem behaviors community wide 8 years after implementation of CTC. DESIGN, SETTING, AND PARTICIPANTS A community-randomized trial was performed in 24 small towns in 7 states, matched within state, assigned randomly to a control or intervention group in 2003. All fifth-grade students attending public schools in study communities in 2003-2004 who received consent from their parents to participate (76.4% of the eligible population) were included. A panel of 4407 fifth graders was surveyed through 12th grade, with 92.5% of the sample participating at the last follow-up. INTERVENTIONS A coalition of community stakeholders received training and technical assistance to install CTC, used epidemiologic data to identify elevated risk factors and depressed protective factors for adolescent problem behaviors in the community, and implemented tested and effective programs for youths aged 10 to 14 years as well as their families and schools to address their community's elevated risks. MAIN OUTCOMES AND MEASURES Levels of targeted risk; sustained abstinence, and cumulative incidence by grade 12; and current prevalence of tobacco, alcohol, and other drug use, delinquency, and violence in 12th grade. RESULTS By spring of 12th grade, students in CTC communities were more likely than students in control communities to have abstained from any drug use (adjusted risk ratio [ARR] = 1.32; 95% CI, 1.06-1.63), drinking alcohol (ARR = 1.31; 95% CI, 1.09-1.58), smoking cigarettes (ARR = 1.13; 95% CI, 1.01-1.27), and engaging in delinquency (ARR = 1.18; 95% CI, 1.03-1.36). They were also less likely to ever have committed a violent act (ARR = 0.86; 95% CI, 0.76-0.98). There were no significant differences by intervention group in targeted risks, the prevalence of past-month or past-year substance use, or past-year delinquency or violence. CONCLUSIONS AND RELEVANCE Using the CTC system continued to prevent the initiation of adolescent problem behaviors through 12th grade, 8 years after implementation of CTC and 3 years after study-provided resources ended, but did not produce reductions in current levels of risk or current prevalence of problem behavior in 12th grade. TRIAL REGISTRATION clinicaltrials.gov Identifier: NCT01088542.
Effects of In-Season Plyometric Training Within Soccer Practice on Explosive Actions of Young Players

Meylan, C and Malatesta D. Effects of in-season plyometric training within soccer practice on explosive actions of young players. J Strength Cond Res 23(9): 2605-2613, 2009-In soccer, explosive actions such as jumping, sprinting, and changes of direction are essential to optimal performance not only in adults, but also in children's games. The purpose of the present investigation was to determine the influence of a short-term plyometric training within regular soccer practice on explosive actions of early pubertal soccer players during the in-season. Fourteen children (13.3 ± 0.6 years) were selected as the training group (TG) and 11 children (13.1 ± 0.6 years) were defined as the control group (CG). All children were playing in the same league and trained twice per week for 90 minutes with the same soccer drills. The TG followed an 8-week plyometric program (i.e., jumping, hurdling, bouncing, skipping, and footwork) implemented as a substitute for some soccer drills to obtain the same session duration as CG. At baseline and after training, explosive actions were assessed with the following 6 tests: 10-meter sprint, agility test, 3 vertical jump tests (squat jump [SJ], countermovement jump [CMJ], contact test [CT] and multiple 5 bounds test [MB5]). Plyometric training was associated with significant decreases in 10-m sprint time (−2.1%) and agility test time (−9.6%) and significant increases in jump height for the CMJ (+7.9%) and CT (+10.9%). No significant changes in explosive actions after the 8-week period were recorded for the CG. The current study demonstrated that a plyometric program within regular soccer practice improved explosive actions of young players compared to conventional soccer training only. Therefore, the short-term plyometric program had a beneficial impact on explosive actions, such as sprinting, change of direction, and jumping, which are important determinants of match-winning actions in soccer performance.
Early cannulation graft Flixene™ for conventional and complex hemodialysis access creation

Purpose The Flixene™ (Atrium™, Hudson, NH) is a trilaminate composite polytetrafluoroethylene (PTFE) graft that allows access within 72 hours. We evaluate our initial experience with this device for conventional and complex hemodialysis access creation. Methods Retrospective review in end-stage renal disease (ESRD) patients who underwent access creation with Flixene from January 2013 to July 2014. For our analysis, the patients were divided in two groups: those with complex access configurations tunneled in the chest and/or abdominal wall (thoraco-abdominal wall access [TAWA]), and those tunneled in conventional sites (extremity access [EA]). Patient's demographics, indications, complications, reinterventions, patency rates and factors influencing outcomes were evaluated. Results In 19 patients (54% men; mean age 44 years ± 18), 24 grafts were implanted, (13 EA [54%] vs. 11 TAWA), all patent after surgery. Central venous occlusive disease (CVOD) was present in all patients with TAWA and in 7/13 (54%) EA patients (p = 0.016). Early cannulation (within 72 hours) was successful in 12 EA and 5 TAWA grafts (p = 0.044). Complication rates including infection, thrombosis, bleeding and steal syndrome were 8/11 (73%) in TAWA and 5/13 (38%) in EA (p = 0.02). At 12 months, primary patency rates for EA and TAWA were 25% and 41%; secondary patency rates were 55% and 41%, respectively. Conclusions Early cannulation (EC) grafts are viable alternatives for conventional and complex access creation that allowed early cannulation (<72 hours) in 17 (70%) of our cases. Primary and secondary patency rates at 12 months were equivalent to data reported on ePTFE grafts.
Combining T-cell Vaccination and Application of Agonistic Anti-GITR mAb (DTA-1) Induces Complete Eradication of HPV Oncogene Expressing Tumors in Mice

We generated an adenovirus-based T-cell vaccine (Ad-p14) that reliably elicits T-cell responses to human papillomavirus (HPV) oncogenes of the 2 most common high-risk HPV serotypes. The artificial gene used to create the vaccine comprising 415 aa (1248 bp) was cloned by fusing 14 polymerase chain reaction fragments of HPV16 and HPV18 E6 and E7 oncogenes devoid of sequences with transforming potential. Although ensuring maximal biologic safety, the construct includes approximately 70% of the relevant T-cell epitopes. In a tumor model for cervical cancer (C3), therapeutic vaccination led to complete eradication in 100% of the mice. In a second model (TC1), it induced initial tumor mass reduction, but 90% of the animals showed delayed tumor progression. To further improve the therapeutic effect, vaccination was combined with systemic application of imiquimod, anti-CD4, α-interferon, or anti-GITR. Although adding α-interferon improved the therapeutic potential of Ad-p14 by 40%, the combination with anti-GITR resulted in complete and permanent eradication of all TC1 tumors. Ad-p14 has clinical potential for treating HPV-induced lesions, and the added effect of immune response modifiers stresses the importance of combined protocols for immunotherapy of malignant tumors.
The impact of alcohol-specific rules, parental norms about early drinking and parental alcohol use on adolescents' drinking behavior.

BACKGROUND The present study explores the role of having rules about alcohol, parental norms about early alcohol use, and parental alcohol use in the development of adolescents' drinking behavior. It is assumed that parental norms and alcohol use affect the rules parents have about alcohol, which in turn prevents alcohol use by adolescent children. METHODS Longitudinal data collected from 416 families consisting of both parents and two adolescents (aged 13 to 16 years) were used for the analyses. RESULTS Results of structural equation modeling show that having clear rules decreases the likelihood of drinking in adolescence. However, longitudinally alcohol-specific rules have only an indirect effect on adolescents' alcohol use, namely through earlier drinking. Analyses focusing on explaining the onset of drinking revealed that having strict rules was related to the postponement of drinking initiation of older and younger adolescents. Further, parental norms about adolescents' early drinking and parental alcohol use were associated with having alcohol-specific rules. Parental norms were also related to adolescents' alcohol use. CONCLUSIONS The current study is one of the first using a full family design to provide insight into the role of alcohol-specific rules on adolescents' drinking. It was shown that having strict rules is related to postponement of drinking, and that having alcohol-specific rules depends on other factors, thus underlining the complexity of the influence of parenting on the development of adolescents' alcohol use.
Pharmacokinetics and Pharmacodynamics of Multiple Weekly Subcutaneous Efalizumab Doses in Patients With Plaque Psoriasis

Efalizumab pharmacokinetics, pharmacodynamics, and efficacy were assessed after subcutaneous administration of 1.0 or 2.0 mg/kg/wk for 12 weeks with 12 weeks of follow‐up in subjects with psoriasis. Steady‐state serum concentrations were achieved by 4 and 8 weeks, respectively. Cmax was 12 and 31 μg/mL, occurring ∼2 days after a SC dose. Serum trough levels were 9 and 24 μg/mL, and CL/Fss was 24 and 16 mL/kg/d. At both doses, CD11a expression on T lymphocytes was maximally down‐modulated to ∼20% of baseline, and CD11a binding sites were >95% saturated. The extent of this PD effect was less for other leukocytes. Leukocyte counts increased by ∼40%, with the majority of this increase related to a significant but reversible increase in the lymphocyte population. Maximal pharmacodynamic effects were sustained at both dose levels through the course of treatment and were commensurate with improvements in psoriasis.
Mechanisms and Outcomes Associated with Disadvantaged Youth Participation in a Summer Sport-Based Youth Development Program: Getting the Parent Perspective

There are numerous youth development programs, and strategies that reduce risk and enhance protective factors or assets at different systems levels (Catalano, Berglund, Ryan, Lonczak, & Hawkins, 2002). These factors, in turn, are known to contribute to multiple positive and negative outcomes for youth (Anderson-Butcher, Stetler, & Midle, Hawkins, Catalano, & Miller 1992; Howard & Jenson, 1999; Jenson, 2004; Richman, Bowen, & Woolley, 2004; Tolan & Guerra, 1994). While research supports the positive impacts of youth development programs and strategies, such as afterschool programs, extracurricular activities and camps, on youth outcomes (Eccles & Barber, 1999; Fredricks & Eccles, 2006; Mahoney, Larson, Eccles, & Lord, 2005), little is known about the contributions of sport-based summer camps (Hartmann, 2003; Watson, Newton, Kim, 2003). In addition, these opportunities may have special importance for youth from disadvantaged circumstances, as they may not typically have access to these opportunities. Little is known about the unique contributions for this special population. Finally, the mechanisms underlying the connection between involvement in these programs and outcomes are relatively unknown (Anderson-Butcher & Cash, 2010; Anderson-Butcher, Newsome, & Ferrari, 2003; Eccles, Barber, Stone, & Hunt, 2003; Gould & Carson, 2008; Petitpas, Cornelious, Van Raalte, & Jones, 2005).
An analysis of changing trends in philosophies of science on nursing theory development and testing

The effects of changing trends in philosophies of science on nursing theory development and testing are analyzed. Two philosophies of science—logical empiricism and historicism—are compared for four variables: (1) components of science, (2) conception of science, (3) assessment of scientific progress, and (4) goal of philosophy of science. These factors serve as the basis for assessing trends in the development and testing of nursing theory from 1964 to the present. The analysis shows a beginning philosophic shift within nursing theory from logical empiricism to historicism and addresses implications and recommendations for future nursing theory development and testing.
Comparison of cranial form and function in association with diet in natricine snakes

The skull of squamates has many functions, with food acquisition and ingestion being paramount. Snakes vary interspecifically in the frequency, size, and types of prey that are consumed. Natural selection should favor phenotypes that minimize the costs of energy acquisition; therefore, trophic morphology should reflect a snake's primary prey type to enhance some aspect of feeding performance. I measured 19 cranial variables for six natricine species that vary in the frequency with which they consume frogs and fish. Both conventional and phylogenetically corrected analyses indicated that fish‐eating snakes have relatively longer upper and lower jaw elements than frog‐eating snakes, which tended to have broader skull components. I also compared the ratio of the in‐lever to the out‐lever lengths of the jaw‐closing mechanism [jaw mechanical advantage (MA)] among species. Fish‐eating snakes had significantly lower MAs in the jaws than did the frog‐eating snakes. This result suggests that piscivores have faster closing jaws and that the jaws of frog‐eating snakes have higher closing forces. Cranial morphology and the functional demands of prey capture and ingestion appear to be associated with primary prey type in natricine snakes. J. Morphol. , 2011. © 2011 Wiley‐Liss, Inc.
Use of Incident Reports by Physicians and Nurses to Document Medical Errors in Pediatric Patients

Objectives. To describe the proportion and types of medical errors that are stated to be reported via incident report systems by physicians and nurses who care for pediatric patients and to determine attitudes about potential interventions for increasing error reports. Methods. A survey on use of incident reports to document medical errors was sent to a random sample of 200 physicians and nurses at a large children's hospital. Items on the survey included proportion of medical errors that were reported, reasons for underreporting medical errors, and attitudes about potential interventions for increasing error reports. In addition, the survey contained scenarios about hypothetical medical errors; the physicians and nurses were asked how likely they were to report each of the events described. Differences in use of incident reports for documenting medical errors between nurses and physicians were assessed with χ2 tests. Logistic regression was used to determine the association between health care profession type and likelihood of reporting medical errors. Results. A total of 140 surveys were returned, including 74 from physicians and 66 by nurses. Overall, 34.8% of respondents indicated that they had reported <20% of their perceived medical errors in the previous 12 months, and 32.6% had reported <40% of perceived errors committed by colleagues. After controlling for potentially confounding variables, nurses were significantly more likely to report ≥80% of their own medical errors than physicians (odds ratio: 2.8; 95% confidence interval: 1.3–6.0). Commonly listed reasons for underreporting included lack of certainty about what is considered an error (indicated by 40.7% of respondents) and concerns about implicating others (37%). Potential interventions that would lead to increased reporting included education about which errors should be reported (listed by 65.4% of respondents), feedback on a regular basis about the errors reported (63.8%) and about individual events (51.2%), evidence of system changes because of reports of errors (55.4%), and an electronic format for reports (44.9%). Although virtually all respondents would likely report a 10-fold overdose of morphine leading to respiratory depression in a child, only 31.7% would report an event in which a supply of breast milk is inadvertently connected to a venous catheter but is discovered before any breast milk goes into the catheter. Conclusions. Medical errors in pediatric patients are significantly underreported in incident report systems, particularly by physicians. Some types of errors are less likely to be reported than others. Information in incident reports is not a representative sample of errors committed in a children's hospital. Specific changes in the incident report system could lead to more reporting by physicians and nurses who care for pediatric patients.
Differential predictors of academic achievement: individual and familial factor interactions with community poverty

ABSTRACT We present an analysis of the contexts within which adolescents graduate from high school and enroll in college. Data from the National Longitudinal Study of Adolescent Health show that adolescents’ school engagement, maternal academic monitoring, and community poverty significantly interact to explain differences in high school graduation and college enrollment rates (n = 7100). To examine this association, we performed weighted logistic regression analyses, controlling for gender, race, block level unemployment, and block level median income. Findings suggest that protective factors can help youth overcome the challenges associated with community poverty and achieve academically in low and medium levels of poverty, but that youth in high-poverty contexts may need more resources to reach higher levels of academic attainment.
Error propagation and methods of error correction in LS FIR filtering and l-step ahead linear prediction

In the paper, a general method is presented, which leads to the exact prediction and tracing of the finite precision error generated in the solution of the l-step ahead linear prediction and the optimal FIR filtering problems. It is shown that two sources of numerical error exist, in the algorithms used for the solution of these problems. The first source lies in the formulas used for the forward linear prediction, while the second source is intimately connected with the formulae used specifically for the solution of the l-step ahead and LS FIR problems. The propagation of this numerical error is determined precisely, and it is shown that there exist specific intermediate quantities, calculated in the evolution of the algorithms, which are indicators of the exact magnitude of the overall finite precision error. Clearly, the way for the error correction is open and, in fact, in the paper, some methods are presented for improving the numerical accuracy of the solution of these problems. >
The benefit of leucovorin-modulated fluorouracil as postoperative adjuvant therapy for primary colon cancer: results from National Surgical Adjuvant Breast and Bowel Project protocol C-03.

PURPOSE This study was designed to evaluate the efficacy of leucovorin-modulated fluorouracil (5-FU) as adjuvant therapy for patients with Dukes' stage B and C colon cancer. PATIENTS AND METHODS Data are presented from 1,081 patients with Dukes' stage B and C carcinoma of the colon entered into National Surgical Adjuvant Breast and Bowel Project (NSABP) protocol C-03 between August 1987 and April 1989. Patients were randomly assigned to receive either lomustine (MeCCNU), vincristine, and 5-FU (MOF), or leucovorin-modulated 5-FU (LV + 5-FU). The mean time on study was 47.6 months. RESULTS Comparison between the two groups indicates a disease-free survival advantage for patients treated with LV + 5-FU (P = .0004). The 3-year disease-free survival rate for patients in this group was 73% (95% confidence interval, 69% to 77%), compared with 64% (95% confidence interval, 60% to 68%) for patients receiving MOF. The corresponding percentage of patients surviving was 84% for those randomized to receive LV + 5-FU and 77% for the MOF-treated cohort (P = .003). At 3 years of follow-up, patients treated with postoperative LV + 5-FU had a 30% reduction in the risk of developing a treatment failure and a 32% reduction in mortality risk compared with similar patients treated with MOF. CONCLUSION Treatment with LV + 5-FU significantly prolongs disease-free survival and results in a significant benefit relative to overall survival. These findings, when considered together with results from a recent meta-analysis demonstrating a benefit from LV + 5-FU in advanced disease, provide evidence to support the concept of metabolic modulation of 5-FU.
Expression of Enzymes During the Germination of Seeds in Endangered Cerrado Species

The objective of this study was to evaluate the enzymes expression during the seeds germination process of ever-lasting species Comanthera elegans and Comanthera bisulcata. For the evaluation of the seeds physiological potential, the germination test and index of germination speed were performed. The expression of enzymes esterase (EST), malate dehydrogenase (MDH), alcohol dehydrogenase (ADH), superoxide dismutase (SOD), catalase (CAT) and endo-β-mannanase during the germination process were evaluated. The expression of these enzymes was evaluated in dried seeds, in the protrusion, in the emergence of the primal leaf, at the beginning of the formation of normal seedling and dormant seeds at the end of the germination process. To the extent that the germination process occurs in the species C. bisulcata and C. elegans there is greater expression of the enzyme CAT and lower of the enzyme EST. There is variation in the expression of the enzymes SOD, ADH and MDH in seeds of both species during the germination process. The enzyme endo-β-mannanase presents greater activity in seeds with radicle protrusion in the two studied species.