Miracle-dz/UniFAR-FTUs huggingface dataset:
A Case of Structural Heterozygosity Affecting Chiasma Frequency and Pollen Fertility in Natural Populations of Artemisia roxburghiana

Meiotic studies have been carried out on six accessions of Artemisia roxburghiana from four regions of Western Himalayas. The accessions collected from Chamba, Kinnaur and Kullu districts of Himachal Pradesh and Kargil district of Jammu and Kashmir showed a normal meiotic course leading to high pollen fertility. However, the accession collected from Drass region of cold deserts of Ladakh, Jammu, and Kashmir showed abnormal meiosis caused by structural heterozygosity for reciprocal translocations. The present study adds the first report of structural heterozygosity in the species. Chiasma frequency was also calculated in the accessions to see the effect of reciprocal translocations. Besides, reciprocal translocation, the accession also showed various meiotic abnormalities in the form of the early disjunction of bivalents, chromatin bridges and laggards leading to abnormal microsporogenesis. Structural heterozygosity and other meiotic abnormalities in the accession seem to be responsible for a reduction in pollen fertility.
An investigation into the effects of a virtual reality system on phantom limb pain: a pilot study

Background: There is no first-line treatment available for phantom limb pain (PLP). For some years, there has been interest in the use of mirrors and other techniques based on visual feedback. Unfortunately, up until now, all published studies have had methodological weaknesses with two recent systematic reviews concluding that therapies of this kind need more evidence to support their use. Aim: To evaluate the effects of a virtual reality (VR) activity on PLP. Methods: This was a prospective pilot study of upper limb amputees using questionnaires to evaluate a VR system. Eleven participants were recruited, with nine completing all three sessions of VR. Participants undertook three sessions of VR, one a month for 3 months. Outcome measures were PLP pain intensity using an 11-point numerical rating scale (NRS), number of PLP episodes and duration of the PLP episodes. All participants were also asked for their judgement of change. Open-ended questions captured the qualitative experience of all aspects of the VR experience. Results: The mean PLP pain score following three VR sessions reduced (6.11 v 3.56) but this was not a statistical difference (t = 2.1, df = 8, p = 0.07). No statistical difference was found for the number of PLP episodes (Pearson chi-square = 3.43, df = 2, p = 0.18) or the duration of each PLP episode (Pearson chi-square = 22.50, df = 16, p = 0.13). Three groups emerged: those whose pain reduced (the majority), those whose pain remained the same (small number) and one those whose pain increased slightly. Discussion: There is insufficient evidence from these results to identify an effect of VR on PLP; however, this is a small group and qualitatively most were content with the treatment and wanted a longer trial.
Molecular and cellular phenotypic differences distinguish murine syngeneic models from human tumors

The clinical success of immune checkpoint inhibitors that target cytotoxic T-lymphocyte associated protein 4 (CTLA4) and programmed cell death protein 1 (PD-1) or programmed death ligand-1 (PD-L1) demonstrates that reactivation of the human immune system delivers durable responses for some patients and represents an exciting approach for cancer treatment. The combination of multiple immunotherapies as well as the combination of immunotherapy with targeted therapy is being pursued vigorously to increase the rate and extend the duration of response. Preclinical in vivo models for immuno-oncology (IO) typically require immunocompetent mice bearing murine syngeneic tumors. To facilitate translation of preclinical studies into human, we characterized the genomic, transcriptomic, and protein expression of a panel of mouse tumor cell lines grown in vitro culture as well as in vivo tumor samples. Our studies identified many genetic and cellular phenotypic differences that distinguish murine syngeneic models from human cancers. For example, only a small fraction of the somatic single nucleotide variants (SNVs) in mouse cell lines directly match SNVs from human actionable cancer genes. At the cellular level, some epithelial tumor models have a more mesenchymal phenotype with relatively low T-lymphocyte infiltration compared to the corresponding human cancers. Furthermore, in contrast to what has been reported for human tumors, we did not observe a correlation between neoantigen load and cytolytic activity in syngeneic models. Finally, the relative immunogenicity of syngeneic tumors does not typically resemble that of human tumors of the same tissue origin. CT26, a colon tumor model, had the highest immunogenicity and was the most responsive model to CTLA4 inhibitor treatment, by contrast to the relatively low immunogenicity and response rate to checkpoint inhibitor therapies in human colon cancers. These differences highlight limitations of syngeneic models for evaluating novel immune therapies and rationalize some of the challenges associated with translating preclinical findings to clinical studies.
Hydrochar-Amended Substrates for Production of Containerized Pine Tree Seedlings under Different Fertilization Regimes

There is a growing body of research that recognizes the potentials of biochar application in agricultural production systems. However, little is known about the effects of biochar, especially hydrochar, on production of containerized seedlings under nursery conditions. This study aimed to test the effects of hydrochar application on growth, quality, nutrient and heavy metal contents, and mycorrhizal association of containerized pine seedlings. The hydrochar used in this study was produced through hydrothermal carbonization of paper mill biosludge at 200 °C. Two forms of hydrochar (powder and pellet) were mixed with peat at ratios of 10% and 20% (v/v) under three levels of applied commercial fertilizer (nil, half and full rates). Application of hydrochar had positive or neutral effects on shoot biomass and stem diameter compared with control seedlings (without hydrochar) under tested fertilizer levels. Analysis of the natural logarithmic response ratios (LnRR) of quality index and nutrient and heavy metal uptake revealed that application of 20% (v/v) hydrochar powder or pellet with 50% fertilizer resulted in same quality pine seedlings with similar heavy metal (Cu, Ni, Pb, Zn and Cr) and nutrient (P, K, Ca and Mg) contents as untreated seedlings supplied with 100% fertilizer. Colonization percentage by ectomycorrhizae significantly increased when either forms of hydrochar were applied at a rate of 20% under unfertilized condition. The results of this study implied that application of proper rates of hydrochar from biosludge with adjusted levels of liquid fertilizer may reduce fertilizer requirements in pine nurseries.
The Prevalence of Single-Specimen/Locality Species in Insect Taxonomy: An Empirical Analysis

Although about two million species have been named, our knowledge about the biodiversity of many taxonomic groups remains inadequate and incomplete. There has been increased taxonomic effort for the discovery of more species and their geographical distribution information. During this process, species collected only from a single specimen/locality often appear. However, there are very few empirical data available to understand the current situation of single specimen/locality species in insect taxonomy. In this paper, we collected 1261 articles containing 4811 insect species from ZooKeys between 2009 and 2017, and we extracted data, including the publication date, number of specimens/locality, and DNA usage. Our analyses demonstrated that 21.53% and 21.74% of new species were described from only one specimen and one locality, respectively, and approximately half of all new species were published based on fewer than five specimens. Meanwhile, the rate of single-specimen species in papers with or without DNA data was 15.06% and 23.43%, respectively, which indicates that incorporating DNA data in species descriptions might effectively decrease the occurrence of single-specimen species. We suggest that taxonomists should adopt more beneficial practices, such as increasing specimen diversity, incorporating DNA data, and improving international collaboration, in the description of new species.
Biological Management of Grey Leaf Blight (Pestalotia anacardii) of Mango (Mangifera indica)

Mango is one of the important fruit crops grown extensively in Gujarat. Mango trees were found severely affected by grey leaf blight disease (Pestalotia anacardii) at Horticulture farm of Navsari Agricultural University, Navsari. So, present investigation was carried out to study the biological management measures against the disease under greenhouse conditions on cultivar Kesar. Among the various antagonists studied, P. fluorescens, T. viride and T. harzianum were found promising as potential biocontrol agents against grey leaf blight of mango.
Frequency Distribution of Keratinophilic Dermatophyte Fungi from the Soil of Different Zones in Isfahan Using Morphological and Molecular Methods

Background: Dermatophytes are one of the most important etiologic agents of cutaneous infections in humans and animals. The present study aimed to study the frequency distribution of keratinophilic dermatophyte fungi using conventional and molecular methods in soil of Isfahan city. Materials and Methods: In this study, 200 soil samples were randomly selected in three northern, southern, and central parts of Isfahan using hair-baiting technique. The fungi were identified by morphology based on macroscopic and microscopic characteristics of fungi. Furthermore, the sequencing of ITS1-5.8S-ITS2 region of the ribosomal DNA of the 60 randomly isolated fungi was investigated. Results: The results of conventional method showed that from a total of 371 fungal colonies, the highest amount of detected colonies was in the central zone (151, 40.26%). Furthermore, in all three areas, the most common detected dermatophyte was Microsporum gypseum (38.3%). The results of the molecular analysis showed that M. gypseum identified by the morphology method was Nannizzia fulva, and also, Chrysosporium sp. with the frequency of 30% in morphology method was the second dominated fungus including Chrysosporium keratinophilum (42.6%) and Chrysosporium shanxiense (21.4%) which confirmed by sequencing method. Conclusion: The results showed that keratinophilic dermatophyte fungi including Nannizzia fulva, Chrysosporium sp. , and Trichophyton mentagrophytes are found in the children playgrounds in Isfahan. Therefore, health-care officials should pay more attention to these hygienic issues. C. shanxiense, which is found here for the first time in Iran, has been reported only from China.
Intelligent Intrusion Detection System Using Genetic Algorithm

Intrusion detection is an essential and important technique in research field. One of the main challenges in the security system of large-scale high-speed networks is the detection of suspicious anomalies in network traffic patterns due to different kinds of network attack. We give attacks normally identified by intrusion detection systems. Differentiation can be done in existing intrusion detection methods and systems based on the underlying computational methods used. Intrusion detection methods started appearing in the last few years. In this paper we propose an Intrusion detection method using Genetic Algorithm (GA). In this research contribution of each of above mentioned techniques will be systematically summarized and compared that will allows us to clearly define existing research challenges, and to highlight promising new research directions.
Physical Exercise Is Confirmed to Reduce Low Back Pain Symptoms in Office Workers: A Systematic Review of the Evidence to Improve Best Practices in the Workplace

This systematic review aimed to analyze the effects of a physical exercise (PE) program on low back pain (LBP) symptoms of office workers and the modification of flexibility and range of motion (ROM), muscular strength, and quality of life (QoL). A literature research was performed on PubMed, Scopus, MEDLINE, and SPORTDiscus from April to May 2018. The keyword “low back pain” was associated with “office worker” OR “VDT operators” OR “office employees” OR “workplace” AND “exercise”, OR “exercise therapy” OR “physical activity”. Inclusion criteria were a home- or work-based exercise protocol for office workers with LBP symptoms and pre- to post-intervention evaluation of LBP symptoms. Three researchers independently examined all abstracts. The modified Cochrane methodological quality criteria were used for quality assessment and 11 articles were included. Exercise protocols were performed from 6 weeks to 12 months, 1–5 day per week, lasting 10–60 min for each session. Physical Exercise in the workplace improved all the considered outcomes. The best improvement was recorded in supervised protocols and in video-supported protocols performed in the workplace. The effect may be generated with small duration sessions during the working day, with only 10–15 min of adapted exercise to be performed 3–5 days per week.
Temporal stability of killifish hybrid clonal lineages

The majority of vertebrates reproduce sexually, but a small percentage can reproduce clonally (asexual reproduction). The Common killifish (Fundulus heteroclitus) and Banded killifish (Fundulus diaphanus) are found along the Atlantic coast of Canada and sympatric populations are able to hybridize and produce female clones. These clonal lineages have independently arisen multiple times throughout the Maritimes, and Porter’s Lake, Nova Scotia, is the home of the best-studied population. Ten years earlier, ten clonal lineages were found, and one major clone was most prevalent in Porter’s Lake. As well, three out of 138 hybrids had genotypes consistent with sexual reproduction, and all clonal F1 hybrids had F. diaphanus mothers. The goals of my study were to: i) determine if the same major clone is still the most prevalent and if the same clonal lineages still persist at Porter’s Lake ten years later, ii) search for further sexually-reproducing hybrids, and iii) test if any hybrids have F. heteroclitus mothers. To do so, we used a species-specific mitochondrial DNA restriction fragment length polymorphism assay to assess maternal lineages and four nuclear microsatellite loci that have species-specific alleles to assign clonal lineages and test for sexually reproducing hybrids. Five new clonal lineages were detected as well as a new major clone, indicating that the clonal lineages are not temporally stable. Additionally, six potentially all-female sexual hybrids were identified out of the 51 hybrids found in 2018 and I found one F1 hybrid with a F. heteroclitus mother.
To search or to browse: How users navigate a new interface for online library tutorials

ABSTRACT As academic libraries create online learning objects, it is important to consider whether such resources actually reach and answer the questions of intended users. This study considers three points of inquiry for one academic library: How its users make their way to the library's tutorials; user preference for searching or browsing for resources, when given both modes of access; and the kinds of online learning objects or tutorials users are seeking. A close examination of Web analytics and users’ search terms within the tutorials interface helped to illustrate patterns of access and highlighted users’ needs for tutorials and online learning objects.
Understanding Human Motivation

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Differences in strategic abilities but not associative processes explain memory development

Children’s learning capabilities change while growing up. One framework that describes the cognitive and neural development of children’s growing learning abilities is the two-component model. It distinguishes processes that integrate separate features into a coherent memory representation (associative component) and executive abilities, such as elaboration, evaluation and monitoring, that support memory processing (strategic component). In an fMRI study using an object-location association paradigm, we investigated how the two components influence memory performance across development. We tested children (10-12 yrs., n=31), late adolescents (18 yrs., n=29) and adults (25+ yrs., n=30) of either sex. For studying the associative component, we also probed how the utilisation of prior knowledge (schemas) facilitates memory across age groups. Children had overall lower retrieval performance, while adolescents and adults did not differ from each other. All groups benefitted from schemas, but this effect did not differ between groups. Performance differences between groups were associated with deactivation of the dorsal medial prefrontal cortex (dmPFC), which in turn was linked to executive functioning. These patterns were stronger in adolescents and adults and seemed absent in children. This pattern of results suggests the children’s executive system, the strategic component, is not as mature and thus cannot facilitate memory performance in the same way as in adolescents/adults. In contrast, we did not find age-related differences in the associative component; with activity in the angular gyrus predicting memory performance systematically across groups. Overall our results suggest that differences of executive rather than associative abilities explain memory differences between children, adolescents and adults.
Neck Grasp Predicts Obstructive Sleep Apnea in Type 2 Diabetes Mellitus

Aims Obstructive sleep apnea (OSA) is a common disorder with high morbidity, mortality, and an increasing prevalence in the general population. It has an even higher prevalence among individuals with type 2 diabetes mellitus (DM). The snoring, tiredness, observed apnea, high blood pressure, body-mass-index, age, neck circumference and male gender (STOP-BANG) questionnaire and Berlin Questionnaire can be cumbersome in clinical practice and require subjective data on sleepiness. We proposed prospectively studying a primary care population with type 2 DM comparing neck grasp, neck circumference, and common screening questionnaires to identify OSA. Methods Persons with a diagnosis of type 2 DM were recruited from a primary care clinic. Participants were screened using Easy Sleep Apnea Predictor (ESAP), STOP-Bang questionnaire, and Berlin questionnaire. A positive ESAP was defined as a 1cm gap when a patient encircled their hands around the neck. All subjects underwent in-laboratory PSG testing. Results Forty-three participants were enrolled and the prevalence of OSA was 90.7% (AHI ≥ 5). The median BMI was 38.0. The prevalence of mild OSA by PSG (AHI 5-14) was 27.9%, moderate OSA (AHI 15-29) was 25.6%, and severe OSA (AHI >30) was 37.2%. For mild OSA both ESAP and neck circumference showed 100% specificity. Conclusions This study reinforces the need for screening diabetic persons for obstructive sleep apnea. ESAP and neck circumference are useful for identifying persons with type 2 DM who are at risk for OSA. Together these findings could improve recognition of OSA in persons at risk for cardiovascular disease. Trial Registration of “Neck grasp as a predictor of Sleep Apnea,” https://clinicaltrials.gov/ct2/show/NCT02474823, Clinical Trials.gov Identifier, is NCT02474823.
Bispecific T-Cell Redirection versus Chimeric Antigen Receptor (CAR)-T Cells as Approaches to Kill Cancer Cells

The concepts for T-cell redirecting bispecific antibodies (TRBAs) and chimeric antigen receptor (CAR)-T cells are both at least 30 years old but both platforms are just now coming into age. Two TRBAs and two CAR-T cell products have been approved by major regulatory agencies within the last ten years for the treatment of hematological cancers and an additional 53 TRBAs and 246 CAR cell constructs are in clinical trials today. Two major groups of TRBAs include small, short-half-life bispecific antibodies that include bispecific T-cell engagers (BiTE®s) which require continuous dosing and larger, mostly IgG-like bispecific antibodies with extended pharmacokinetics that can be dosed infrequently. Most CAR-T cells today are autologous, although significant strides are being made to develop off-the-shelf, allogeneic CAR-based products. CAR-Ts form a cytolytic synapse with target cells that is very different from the classical immune synapse both physically and mechanistically, whereas the TRBA-induced synapse is similar to the classic immune synapse. Both TRBAs and CAR-T cells are highly efficacious in clinical trials but both also present safety concerns, particularly with cytokine release syndrome and neurotoxicity. New formats and dosing paradigms for TRBAs and CAR-T cells are being developed in efforts to maximize efficacy and minimize toxicity, as well as to optimize use with both solid and hematologic tumors, both of which present significant challenges such as target heterogeneity and the immunosuppressive tumor microenvironment.
Development and validation of a novel oral oxycodone self-administration protocol for female and male rats

The increased abuse of opioids - such as oxycodone - poses major challenges for health and socioeconomic systems. Here we present a novel oral oxycodone self-administration paradigm in rats that recapitulates key aspects of prescription opioid abuse: voluntary drug intake, long-term opioid exposure, measurable levels of dependence, and increased motivation to take drug. Adult female and male Long-Evans rats were given unlimited, home cage access to two bottles containing water (Control rats) or one bottle of water and one bottle of Oxycodone dissolved in water (Experimental rats). Virtually all Experimental rats voluntarily drank oxycodone (~10 mg/kg/day) and escalated their intake over 22 weeks. Females self-administered twice as much oxycodone as males, leading to greater levels of oxycodone in blood, and engaged in more gnawing behavior. Precipitated withdrawal revealed high levels of dependence in both sexes in the total withdrawal score and in individual withdrawal behaviors. Reflecting motivation to drink oxycodone, citric acid at ascendant concentrations suppressed the intake of oxycodone (Experimental rats) and the intake of water (Control rats); however Experimental rats returned to pre-citric acid preference levels whereas Controls rats did not. Finally, long-term exposure to oxycodone reduced the alpha diversity of the gut microbiome compared to water Controls but had varying effects on the relative abundance of select bacterial Phyla. Thus, our model reproduces in female and male rats many of the features of human oxycodone abuse, and provides a paradigm for both understanding mechanisms that mediate long-term voluntary drug use and for exploring potential treatment options.