Miracle-dz/UniFAR-FTUs huggingface dataset:
Extending the SBUV PMC Data Record with OMPS NP 1 2

1 2 Matthew T. DeLand and Gary E. Thomas 3 4 Science Systems and Applications, Inc. (SSAI), Lanham, Maryland 20706 USA 5 6 Laboratory for Atmospheric and Space Physics (LASP)/University of Colorado, Boulder, 7 Colorado 80303 USA 8 9 Correspondence to: Matthew DeLand (matthew.deland@ssaihq.com) 10 11 Abstract. We have utilized Solar Backscatter Ultraviolet (SBUV) instrument measurements of 12 atmospheric radiance to create a 40-year record of polar mesospheric cloud (PMC) behavior. 13 While this series of measurements is nearing its end, we show in this paper that Ozone Mapping 14 and Profiling Suite (OMPS) Nadir Profiler (NP) instruments can be added to the merged SBUV 15 PMC data record. Regression analysis of this extended record shows smaller trends in PMC ice 16 water content (IWC) since approximately 1998, consistent with previous work. Current trends 17 are significant at the 95% confidence level in the Northern Hemisphere, but not in the Southern 18 Hemisphere. The PMC IWC response to solar activity has decreased in the Northern 19 Hemisphere since 1998, but has apparently increased in the Southern Hemisphere. 20 21
Lamin A/C dysregulation contributes to cardiac pathology in a mouse model of severe spinal muscular atrophy.

Cardiac pathology is emerging as a prominent systemic feature of spinal muscular atrophy (SMA), but little is known about the underlying molecular pathways. Using quantitative proteomics analysis, we demonstrate widespread molecular defects in heart tissue from the Taiwanese mouse model of severe SMA. We identify increased levels of lamin A/C as a robust molecular phenotype in the heart of SMA mice, and show that lamin A/C dysregulation is also apparent in SMA patient fibroblast cells and other tissues from SMA mice. Lamin A/C expression was regulated in-vitro by knockdown of the E1 ubiquitination factor UBA1, a key downstream mediator of SMN-dependent disease pathways, converging on β-catenin signalling. Increased levels of lamin A are known to increase the rigidity of nuclei, inevitably disrupting contractile activity in cardiomyocytes. The increased lamin A/C levels in the hearts of SMA mice therefore provide a likely mechanism explaining morphological and functional cardiac defects, leading to blood pooling. Therapeutic strategies directed at lamin A/C may therefore offer a new approach to target cardiac pathology in SMA.
Integrating Surface-Based Temperature and Vegetation Abundance Estimates into Land Cover Classifications for Conservation Efforts in Savanna Landscapes

Southern African savannas are an important dryland ecosystem, as they account for up to 54% of the landscape, support a rich variety of biodiversity, and are areas of key landscape change. This paper aims to address the challenges of studying this highly gradient landscape with a grass–shrub–tree continuum. This study takes place in South Luangwa National Park (SLNP) in eastern Zambia. Discretely classifying land cover in savannas is notoriously difficult because vegetation species and structural groups may be very similar, giving off nearly indistinguishable spectral signatures. A support vector machine classification was tested and it produced an accuracy of only 34.48%. Therefore, we took a novel continuous approach in evaluating this change by coupling in situ data with Landsat-level normalized difference vegetation index data (NDVI, as a proxy for vegetation abundance) and blackbody surface temperature (BBST) data into a rule-based classification for November 2015 (wet season) that was 79.31% accurate. The resultant rule-based classification was used to extract mean Moderate Resolution Imaging Spectroradiometer (MODIS) NDVI values by season over time from 2000 to 2016. This showed a distinct separation between each of the classes consistently over time, with woodland having the highest NDVI, followed by shrubland and then grassland, but an overall decrease in NDVI over time in all three classes. These changes may be due to a combination of precipitation, herbivory, fire, and humans. This study highlights the usefulness of a continuous time-series-based approach, which specifically integrates surface temperature and vegetation abundance-based NDVI data into a study of land cover and vegetation health for savanna landscapes, which will be useful for park managers and conservationists globally.
Phenotypic and Ig Repertoire Analyses Indicate a Common Origin of IgD−CD27− Double Negative B Cells in Healthy Individuals and Multiple Sclerosis Patients

Key Points DN B cells are abnormally elevated in MS patients but have the same origin as in HC. DN B cells resemble CSM B cells but appear to be at an earlier maturation state. DN and CSM B cells undergo unique differentiation pathways. IgD−CD27− double negative (DN) B cells with proinflammatory characteristics are abnormally elevated in a proportion of multiple sclerosis (MS) patients. In this study, the origin and selection characteristics of DN B cells were studied in MS patients and healthy controls (HC). Expression of developmental markers on peripheral blood DN, IgD−CD27+ class-switched memory (CSM) and IgD+CD27− naive B cells of HC (n = 48) and MS patients (n = 96) was determined by flow cytometry. High-throughput adaptive immune receptor repertoire sequencing was performed on peripheral blood DN and CSM B cells of HC and MS patients (n = 3 each). DN B cells from HC and MS patients showed similar phenotypic and Ig repertoire characteristics. Phenotypic analysis indicated a mature state of DN B cells by low CD5, CD10, and CD38 expression. However, the frequency of CD95+ and IgA+ cells was lower in DN versus CSM B cells. DN B cells are Ag experienced, as shown by somatic hypermutation of their Ig genes in adaptive immune receptor repertoire sequencing, although they showed a lower mutation load than CSM B cells. Shared clones were found between DN and CSM B cells, although >95% of the clones were unique to each population, and differences in V(D)J usage and CDR3 physicochemical properties were found. Thus, DN B cells arise in HC and MS patients via a common developmental pathway that is probably linked to immune aging. However, DN and CSM B cells develop through unique differentiation pathways, with most DN B cells representing an earlier maturation state.
“It’s like these CHCs don’t exist, are they featured anywhere?”: Social network analysis of community health committees in a rural and urban setting in Kenya

Background In Kenya, Community Health Committees (CHC) were established to enhance community participation in health services. Their role is to provide leadership, oversight in delivery of community health services, promote social accountability and mobilize resources for community health. CHCs form social networks with other actors, with whom they exchange health information for decision-making and accountability. This case study aimed to explore the structure of a rural and an urban CHC network and to analyze how health-related information flowed in these networks. Understanding the pathways of information in community settings may provide recommendations for strategies to improve the role and functioning of CHCs. Methods In 2017, we conducted 4 focus group discussions with 27 community discussants and 10 semi-structured interviews with health professionals in a rural area and an urban slum. Using social network analysis, we determined the structure of their social networks and how health related information flowed in these networks. Results Both CHCs were composed of respected persons nominated by their communities. Each social network had 12 actors that represented both community and government institutions. CHCs were not central actors in the exchange of health-related information. Health workers, community health volunteers and local Chiefs in the urban slum often passed information between the different groups of actors, while CHCs hardly did this. Therefore, CHCs had little control over the flow of health-related information. Although CHC members were respected persons who served in multiple roles within their communities, this did not enhance their centrality. It emerged that CHCs were often left out in the flow of health-related information and decision-making, which led to demotivation. Community health volunteers were more involved by other actors such as health managers and non-governmental organizations as a conduit for health-related information. Conclusion Social network analysis demonstrated how CHCs played a peripheral role in the flow of health-related information. Their perception of being left out of the information flow led to demotivation, which hampered their ability to facilitate community participation in community health services; hence challenging effective participation through CHCs.
Grit, resilience and mindset in health students

Grit, resilience and a growth mindset are personal traits conducive to optimal learning and clinical readiness. These are important traits to consider with regards to whether a student thrives or struggles in challenging situations. Research with medical, nursing and pharmacy students demonstrates correlations of these traits with positive well‐being and academic success. No research has investigated the traits of resilience, grit and mindset type together in health professional students to explore whether they are related, and none have focused on physiotherapy students.
Serious game-based intervention for children with developmental disabilities.

BACKGROUND Children with developmental disabilities may need support with motor skills such as balance improvement, cognitive skills such as vocabulary learning, or social skills such as adequate interpretation of emotional expressions. Digital interactive games could support the standard treatments. We aimed to review clinical studies which investigated the application of serious games in children with developmental disabilities. METHOD We searched MEDLINE and Scopus on 05 May 2019 limited to English language. We included people between two and 24 years of age who were affected by neurodevelopmental disorders who received digital serious game-based medical interventions such as any computer-based or video-based games. We considered any study design reporting primary data. We used title, abstract, and full-text of journal articles to build diagnostic groups, and we described some selected specific game applications. RESULTS The majority of the 145 relevant studies reported on autism spectrum disorder (ASD), attention deficit hyperactivity disorder (ADHD), developmental coordination disorder (DCD), and disabilities affecting intellectual abilities (DAIA). 30 of the 145 studies reported a randomized design. We detailed six specific applications aimed at improving abilities in children with ASD, ADHD, cerebral palsy, and Down syndrome. We visualized the diagnostic groups by bibliographic mapping, and we limited the text to the title and abstract of journal articles. CONCLUSION We identified promising results regarding anxiety reduction, stress regulation, emotion recognition, and rehabilitation. Currently, there appears to be a lack of clinical evidence that children with neurodevelopmental disorders can benefit from the application of serious games.
High-Intensity Acute Exercise and Directed Forgetting on Memory Function

Background and Objectives: Despite accumulating research demonstrating that acute exercise may enhance memory function, very little research has evaluated whether acute exercise can effectuate intentional directed forgetting (DF), an adaptative strategy to facilitate subsequent memory performance. Materials and Methods: A three-arm parallel-group randomized controlled intervention was employed. Participants were randomized into one of three groups, including: (1) exercise plus DF (Ex + DF), (2) DF (directed forgetting) only (DF) and (3) R (remember) only (R). The acute bout of exercise included 15 min of high-intensity treadmill exercise. The memory assessment involved the presentation of two-word lists. After encoding the first word list, participants were either instructed to forget all of those words (DF) or to remember them. Following this, participants encoded the second word list. Results: We observed a statistically significant main effect for list F(1, 57) = 12.27, p < 0.001, η2p = 0.18, but no main effect for group F(2, 57) = 1.32, p = 0.27, η2p = 0.04, or list by group interaction, F(2, 57) = 2.89, p = 0.06, η2p = 0.09. Conclusions: This study demonstrates a directed forgetting effect in that cueing an individual to forget a previously encoded list of items facilitates memory performance on a subsequent list of items. However, we failed to demonstrate any beneficial effect of acute exercise in facilitating directed forgetting. These findings are discussed in the context of directed forgetting theories, particularly the attention inhibition mechanism, as well as the timing of the acute bout of exercise.
Heparin therapy as adjuvant treatment for profound idiopathic sudden sensorineural hearing loss

This study aimed to provide evidence of whether unfractionated heparin used as adjuvant therapy in conjunction with systemic corticosteroid therapy improves hearing recovery in patients with profound idiopathic sudden sensorineural hearing loss (ISSNHL), and to compare the effect of this treatment with those of additional intratympanic corticosteroid therapy.
Discovery of Novel DPP-IV Inhibitors as Potential Candidates for the Treatment of Type 2 Diabetes Mellitus Predicted by 3D QSAR Pharmacophore Models, Molecular Docking and De Novo Evolution

Dipeptidyl peptidase-IV (DPP-IV) rapidly breaks down the incretin hormones glucagon-like peptide-1 (GLP-1) and glucose-dependent insulinotropic peptide (GIP). Thus, the use of DPP-IV inhibitors to retard the degradation of endogenous GLP-1 is a possible mode of therapy correcting the defect in incretin-related physiology. The aim of this study is to find a new small molecule and explore the inhibition activity to the DPP-IV enzyme using a computer aided simulation. In this study, the predicted compounds were suggested as potent anti-diabetic candidates. Chosen structures were applied following computational strategies: The generation of the three-dimensional quantitative structure-activity relationship (3D QSAR) pharmacophore models, virtual screening, molecular docking, and de novo Evolution. The method also validated by performing re-docking and cross-docking studies of seven protein systems for which crystal structures were available for all bound ligands. The molecular docking experiments of predicted compounds within the binding pocket of DPP-IV were conducted. By using 25 training set inhibitors, ten pharmacophore models were generated, among which hypo1 was the best pharmacophore model with the best predictive power on account of the highest cost difference (352.03), the lowest root mean squared deviation (RMSD) (2.234), and the best correlation coefficient (0.925). Hypo1 pharmacophore model was used for virtual screening. A total of 161 compounds including 120 from the databases, 25 from the training set, 16 from the test set were selected for molecular docking. Analyzing the amino acid residues of the ligand-receptor interaction, it can be concluded that Arg125, Glu205, Glu206, Tyr547, Tyr662, and Tyr666 are the main amino acid residues. The last step in this study was de novo Evolution that generated 11 novel compounds. The derivative dpp4_45_Evo_1 by all scores CDOCKER_ENERGY (CDOCKER, -41.79), LigScore1 (LScore1, 5.86), LigScore2 (LScore2, 7.07), PLP1 (-112.01), PLP2 (-105.77), PMF (-162.5)—have exceeded the control compound. Thus the most active compound among 11 derivative compounds is dpp4_45_Evo_1. Additionally, for derivatives dpp4_42_Evo_1, dpp4_43_Evo2, dpp4_46_Evo_4, and dpp4_47_Evo_2, significant upward shifts were recorded. The consensus score for the derivatives of dpp4_45_Evo_1 from 1 to 6, dpp4_43_Evo2 from 4 to 6, dpp4_46_Evo_4 from 1 to 6, and dpp4_47_Evo_2 from 0 to 6 were increased. Generally, predicted candidates can act as potent occurring DPP-IV inhibitors given their ability to bind directly to the active sites of DPP-IV. Our result described that the 6 re-docked and 27 cross-docked protein-ligand complexes showed RMSD values of less than 2 Å. Further investigation will result in the development of novel and potential antidiabetic drugs.
Stability and Conformational Resilience of Protein Disulfide Isomerase.

Protein disulfide isomerase (PDI) is a redox-dependent protein with oxidoreductase and chaperone activities. It is a U-shaped protein with an abb'xa' structural organization where the a and a' domains have CGHC active sites, the b and b' domains are involved with substrate binding, and x is a flexible linker. PDI exhibits substantial flexibility and undergoes cycles of unfolding and refolding in its interaction with cholera toxin, suggesting PDI can regain a folded, functional conformation after exposure to stress conditions. To determine whether this unfolding-refolding cycle is a substrate-induced process or an intrinsic physical property of PDI, we used circular dichroism to examine the structural properties of PDI subjected to thermal denaturation. PDI exhibited remarkable conformational resilience that is linked to its redox status. In the reduced state, PDI exhibited a 54°C unfolding transition temperature (Tm) and regained 85% of its native structure after nearly complete thermal denaturation. Oxidized PDI had a lower Tm of 48-50°C and regained 70% of its native conformation after 75% denaturation. Both reduced and oxidized PDI were functional after refolding from these denatured states. Additional studies documented increased stability of a PDI construct lacking the a' domain and decreased thermal stability of a construct lacking the a domain. Furthermore, oxidation of the a domain limited the ability of PDI to refold. The stability and conformational resilience of PDI are thus linked to both redox-dependent and domain-specific effects. These findings document previously unrecognized properties of PDI and provide insight into the physical foundation of its biological function.
Genome-wide scan for runs of homozygosity in the composite Montana Tropical® beef cattle.

The aim of this study was to assess the distribution of runs of homozygosity (ROH) and autozygosity islands in the composite Montana Tropical® beef cattle to explore hotspot regions which could better characterize the different biological types within the composite breed. Montana animals (n = 1,436) were genotyped with the GGP-LD BeadChip (~30,000 markers). ROH was identified in every individual using the plink v1.90 software. Medium and long ROH prevailed in the genome, which accounted for approximately 74% of all ROH detected. On an average, 2.0% of the genome was within ROH, agreeing with the pedigree-based inbreeding coefficient. The Montana cattle with a higher proportion of productive breed types showed the highest number of autozygosity islands (n = 17), followed by those with a higher proportion of breeds adapted to tropical environments (n = 15). Enriched terms (p < .05) associated with the immune and inflammatory response, homeostasis, reproduction, mineral absorption, and lipid metabolism were described within the autozygosity islands. In this regard, over-represented GO terms and KEGG pathways described in this population may play a key role in providing information to explore the genetic and biological mechanisms together with the genomic regions underlying each biological type that favoured their optimal performance ability in tropical and subtropical regions.
Diet-induced Plasticity of Linear Static Allometry is Not So Simple for Grasshoppers: Genotype-Environment Interaction in Ontogeny is Masked by Convergent Growth.

Grasshoppers, Melanoplus sanguinipes (Orthoptera; Acrididae), develop larger head width and shorter leg length, relative to body size, when fed low nutrient, lignin-rich grasses compared to sibs fed a diet of high nutrient grasses. To elucidate how underlying genetic variation and plasticity of growth generate plasticity of this linear static allometry within coarse-grained environments, I measured head and leg size of three nymphal instars and adult grasshoppers raised on either a low or high nutrient diet within a half-sib quantitative genetic experiment. Doubly-multivariate repeated measures MANOVA's of head, mandible, and hind leg size and their rate of growth (mm/period) and growth period (days) through ontogeny were used to analyze how the ontogeny of diet-induced plasticity for these variables and additive genetic variation for plasticity (GxE) contribute to plasticity in functional linear static allometry. Genetic variation for diet-induced plasticity (GxE) of head and leg size varied through ontogeny, as did genetic variation for plasticity of growth in 3rd and 4th instar nymphs. Despite extensive genetic variation in plasticity of head width and leg length in 4th instar nymphs, the static allometry between head and leg was stable within each diet because the patterns of GxE were similar for head width, leg length and their coordinated growth. Nutrient sensitive plasticity in growth shifted the intercept but not the slope of static allometry, a result consistent with one outcome of a graphical model of the relationships between GxE and plasticity of within environment static allometry. In addition, GxE of 4th instar head and leg size was reduced in adults by negatively size-dependent, convergent growth in the last period of ontogeny. Consequently, bivariate reaction norms of head and leg size for adults exhibited no GxE and, again, plasticity in the intercept but not the slope of static allometry. The ontogeny of seemingly simple diet-induced linear static allometry between functional body parts in grasshoppers arises from a complex combination of differing patterns of nutrient-sensitive growth, duration of growth, convergent growth, and GxE, all relevant to understanding the development and evolution of functional allometry in hemimetabolous insects.
Prognostic role of diastolic dysfunction in patients undergoing transcatheter aortic valve replacement

Prior studies have shown that left ventricular diastolic dysfunction (DD) is associated with increased mortality after surgical aortic valve replacement but studies on transcatheter aortic valve replacement (TAVR) are limited and have not taken into account mitral annular calcification (MAC), which limits the use of mitral valve annular tissue Doppler imaging. We performed a single‐center retrospective analysis to better evaluate the role of baseline DD on outcomes after TAVR.