Miracle-dz/UniFAR-FTUs huggingface dataset:
Laser-activated irrigation within root canals: cleaning efficacy and flow visualization.

AIM To test ex vivo the efficiency of laser-activated irrigation in removing dentine debris from the apical part of the root canal and to visualize in vitro the fluid dynamics during the activation of the irrigant by laser, using high-speed imaging at a relevant timescale. METHODOLOGY Root canals with a standardized groove in one canal wall filled with dentine debris were irrigated with syringe irrigation, ultrasonically or laser-activated irrigation (LAI) using 2% sodium hypochlorite as irrigant. The quantity of dentine debris after irrigation was determined. Visualization of the fluid dynamics during activation was achieved using a high-speed camera and a glass model. RESULTS Laser-activated irrigation was significantly more effective in removing dentine debris from the apical part of the root canal than passive ultrasonic irrigation or hand irrigation when the irrigant was activated for 20 s. CONCLUSIONS The in vitro recordings suggest that streaming, caused by the collapse of the laser-induced bubble, is the main cleaning mechanism of LAI.
The Effect of Contrast on Vertical Motion Processing Asymmetries in 11-Week-Old Infants

Recent forced-choice preferential looking (FPL) experiments with random-dot patterns [Wattam-Bell, 1998 Investigative Ophthalmology & Visual Science 39(4) S885] found evidence for a perceptual asymmetry of vertical-motion processing in young infants: a preference for patterns that move downwards. This asymmetry was in the opposite direction to the asymmetry of vertical optokinetic nystagmus, which was biased towards upwards motion. However, the FPL bias was weak, and the object of present experiments was to explore the possibility that it could be enhanced by reducing stimulus contrast. In experiment 1, contrast thresholds for gratings moving upwards and downwards were compared, and no directional asymmetry at threshold was found. In experiment 2, the effect of contrast on infants' preference between simultaneously displayed upwards-drifting and downwards-drifting gratings was examined. Infants showed no preference at 5% contrast, a marked preference for downwards motion at intermediate contrasts (10% and 20%), and a similar but smaller preference at 40% contrast. These results suggest that the vertical-motion asymmetry is a result of differences in the gains of directionally selective mechanisms for upwards and downwards motion.
Evidence for Cardiomyocyte Renewal in Humans

It has been difficult to establish whether we are limited to the heart muscle cells we are born with or if cardiomyocytes are generated also later in life. We have taken advantage of the integration of carbon-14, generated by nuclear bomb tests during the Cold War, into DNA to establish the age of cardiomyocytes in humans. We report that cardiomyocytes renew, with a gradual decrease from 1% turning over annually at the age of 25 to 0.45% at the age of 75. Fewer than 50% of cardiomyocytes are exchanged during a normal life span. The capacity to generate cardiomyocytes in the adult human heart suggests that it may be rational to work toward the development of therapeutic strategies aimed at stimulating this process in cardiac pathologies.
Brachial artery injuries in a rural catchment trauma center: are the upper and lower extremity the same?

BACKGROUND The predictors of amputation for patients with lower extremity vascular trauma are well described in the literature, but the predictors of amputation in the upper extremity are not so well defined. We hypothesize that the predictors of amputation in the lower extremity are much different when compared with the upper extremity. METHODS Retrospective chart review of all brachial artery traumatic injuries presenting to a rural-state university trauma center. RESULTS In a 6-year period, 41 patients presented with brachial artery injuries. Operative management was performed in 38 (93%) patients which included 23 reversed saphenous vein grafts, 13 primary repairs, and 2 synthetic grafts. There were four deaths (9.8%) and four (9.8%) amputations. Comparing the amputation and limb salvage groups, the Injury Severity Score (ISS) was 32 versus 12, whereas the Mangled Extremity Severity Score (MESS) was 7 versus 4.3. Five patients had a MESS score greater than 7; four of whom had an amputation or died. Amputation was performed in only 4 of 23 patients with neurologic deficits. Limb salvage was successful in 24 of 28 patients without a palpable pulse on arrival. CONCLUSIONS Predictors of amputation in brachial artery injuries differ from lower extremity vascular injuries. Delayed presentation greater than 6 hours, MESS, open fracture, nerve deficits, and diminished capillary refill were not predictive of amputation for patients with brachial artery injuries. These data suggest that the vast majority of upper extremity injuries should have attempted salvage regardless of the severity scoring systems.
Blood pressure levels post mechanical thrombectomy and outcomes in large vessel occlusion strokes

Objective: There are limited data evaluating the effect of post mechanical thrombectomy (MT) blood pressure (BP) levels on early outcomes of patients with large vessel occlusions (LVO). We sought to investigate the association of BP course following MT with early outcomes in LVO. Methods: Consecutive patients with LVO treated with MT during a 3-year period were evaluated. Hourly systolic BP (SBP) and diastolic BP (DBP) values were recorded for 24 hours following MT and maximum SBP and DBP levels were identified. LVO patients with complete reperfusion following MT were stratified in 3 groups based on post-MT achieved BP goals: <140/90 mm Hg (intensive), <160/90 mm Hg (moderate), and <220/110 mm Hg or <180/105 mm Hg when pretreated with IV thrombolysis (permissive hypertension). Three-month functional independence was defined as modified Rankin Scale score of 0–2. Results: A total of 217 acute ischemic stroke patients with LVO were prospectively evaluated. A 10 mm Hg increment in maximum SBP documented during the first 24 hours post MT was independently (p = 0.001) associated with a lower likelihood of 3-month functional independence (odds ratio [OR] 0.70; 95% confidence interval [CI] 0.56–0.87) and a higher odds of 3-month mortality (OR 1.49; 95% CI 1.18–1.88) after adjusting for potential confounders. In addition, achieving a BP goal of <160/90 mm Hg during the first 24 hours following MT was independently associated with a lower likelihood of 3-month mortality (OR 0.08; 95% CI 0.01–0.54; p = 0.010) in comparison to permissive hypertension. Conclusions: High maximum SBP levels following MT are independently associated with increased likelihood of 3-month mortality and functional dependence in LVO patients. Moderate BP control is also related to lower odds of 3-month mortality in comparison to permissive hypertension.
Relationship between oxygen tension and subgingival bacterial flora in untreated human periodontal pockets

The predominance of anaerobic bacteria in subgingival plaque samples suggests that the pocket environment is anaerobic. In the present investigation, a small oxygen tension (pO2) electrode was inserted into the base of the pocket and the pO2 was recorded. In addition, the plaque in these pockets was examined culturally and microscopically. The oxygen tension at the bottom of 36 pockets (5 to 10 mm in depth) ranged from 5 to 27 mmHg (1 mmHg congruent to 133.3 Pa) with a mean value of 13.3 mmHg. Moderate pockets (5 and 6 mm) exhibited a mean pO2 of 15.7 mmHg, which was significantly higher than the 12.0 mmHg found in the deeper pockets. The deep pockets had higher percentages of spirochetes and Bacteroides intermedius, whereas the moderate pockets had elevated proportions of Actinomyces naeslundii and Streptococcus mutans. The sites with oxygen tensions equal to or less than 15 mmHg had significantly higher percentages of spirochetes, whereas the microaerophilic Capnocytophaga species were found in pockets with a pO2 greater than 15 mmHg. The presence of bleeding in the pocket was associated with higher proportions of B. intermedius, Capnocytophaga sp. , and A. naeslundii. These pO2 readings of periodontal pockets indicated that there is a spectrum of pO2 values which seem to define, in a general way, the microbiological composition of the pocket.
Suburban Families’ Experience With Food Insecurity Screening in Primary Care Practices

To effectively address food insecurity and provide family-centered care, we determined parents’ perceptions of screening for food insecurity in suburban pediatrics practices. BACKGROUND: Food insecurity (FI) remains a major public health problem. With the rise in suburban poverty, a greater understanding of parents’ experiences of FI in suburban settings is needed to effectively screen and address FI in suburban practices. METHODS: We conducted 23 semistructured interviews with parents of children <4 years of age who presented for well-child care in 6 suburban pediatric practices and screened positive for FI. In the interviews, we elicited parents’ perceptions of screening for FI, how FI impacted the family, and recommendations for how practices could more effectively address FI. All interviews were audio recorded and transcribed. We used a modified grounded theory approach to code the interviews inductively and identified emerging themes through an iterative process. Interviews continued until thematic saturation was achieved. RESULTS: Of the 23 parents interviewed, all were women, with 39% white and 39% African American. Three primary themes emerged: Parents expressed initial surprise at screening followed by comfort discussing their unmet food needs; parents experience shame, frustration, and helplessness regarding FI, but discussing FI with their clinician helped alleviate these feelings; parents suggested practices could help them more directly access food resources, which, depending on income, may not be available to them through government programs. CONCLUSIONS: Although most parents were comfortable discussing FI, they felt it was important for clinicians to acknowledge their frustrations with FI and facilitate access to a range of food resources.
FDSOI MOSFET threshold voltage characterization based on AC simulation and measurements

A method for extraction of the threshold voltage corresponding to the front and back interface in FDSOI MOSFETs is proposed. The approach is based on the nonlinear behavior of the capacitances between the source and front/back gate. The method has been discussed using the numerical simulation results and has been demonstrated using the C-V characteristics of the experimental FDSOI devices manufactured in ITE.
Transition nuclear proteins are required for normal chromatin condensation and functional sperm development

Summary: The histone‐to‐protamine transition is important in the formation of spermatozoa. In mammals this involves two steps: replacement of histones by transition nuclear proteins (TPs) and replacement of TPs by protamines. To determine the functions of the TPs and their importance for sperm development, we generated mice lacking both TPs, since mice lacking only TP1 or TP2 were fertile. Our results indicated that TP1 and TP2 had partially complemented each other. In mice lacking both TPs, nuclear shaping, transcriptional repression, histone displacement, and protamine deposition proceeded relatively normally, but chromatin condensation was irregular in all spermatids, many late spermatids showed DNA breaks, and protamine 2 was not posttranslationally processed. Nevertheless, genomic integrity was maintained in mature spermatids, since efficient fertilization and production of offspring were achieved by intracytoplasmic sperm injection. However, many mature spermatids were retained in the testis, epididymal spermatozoa were drastically reduced in number and were highly abnormal, and the mice were sterile. Most epididymal spermatozoa were incapable of fertilization even using intracytoplasmic sperm injection. Thus, in mammals TPs are required for normal chromatin condensation, for reducing the number of DNA breaks, and for preventing the formation of secondary defects in spermatozoa, eventual loss of genomic integrity, and sterility. genesis 38:200–213, 2004. © 2004 Wiley‐Liss, Inc.
Foraging performance of diet‐induced morphotypes in pumpkinseed sunfish (Lepomis gibbosus) favours resource polymorphism

Morphological plasticity can influence adaptive divergence when it affects fitness components such as foraging performance. We induced morphological variation in pumpkinseed sunfish (Lepomis gibbosus) ecomorphs and tested for effects on foraging performance. Young‐of‐year pumpkinseed sunfish from littoral and pelagic lake habitats were reared each on a ‘specialist diet’ representing their native habitat‐specific prey, or a ‘generalist diet’ reflecting a combination of native and non‐native prey. Specialist and generalist diets, respectively, induced divergent and intermediate body forms. Specialists had the highest capture success on their native prey whereas generalist forms were inferior. Specialists faced trade‐offs across prey types. However, pelagic specialists also had the highest intake rate on both prey types suggesting that foraging trade‐offs are relaxed when prey are abundant. This increases the likelihood of a resource polymorphism because the specialized pelagic form can be favoured by directional selection when prey are abundant and by diversifying selection when prey resources are restricted.
Analisis Pengaruh Inflasi, Suku Bunga, Nilai Tukar Rupiah, Dan Produk Domestik Bruto Terhadap Jakarta Islamic Index An Analysis Of The Influence Of Inflation, Interest Rates, Rupiah Exchange Rate, And Gross Domestic Product On The Jakarta Islamic Index

The study aimed to know whether there were influences of inflation, interest rate, exchange rate, and gross domestic product (GDP) on the Jakarta Islamic Index (JII). The study population were factors which influenced the Jakarta Islamic Index. The sample were those factors in the period of 2009-2011. Multiple linear regression was used for the analysis. The analysis showed that inflation had a positive effect on JII, interest rates had a negative effect on JII, the exchange rate had a negative effect on JII and GDP had a positive effect to JII. All independent variables simultaneously had an effect on the JII index. This study was expected to add insights to science, governance and other fields.
Increased wetness confounds Landsat-derived NDVI trends in the central Alaska North Slope region, 1985–2011

Satellite data from the circumpolar Arctic have shown increases in vegetation indices correlated to warming air temperatures (e.g. Bhatt et al 2013 Remote Sensing 5 4229–54). However, more information is needed at finer scales to relate the satellite trends to vegetation changes on the ground. We examined changes using Landsat TM and ETM+ data between 1985 and 2011 in the central Alaska North Slope region, where the vegetation and landscapes are relatively well-known and mapped. We calculated trends in the normalized difference vegetation index (NDVI) and tasseled-cap transformation indices, and related them to high-resolution aerial photographs, ground studies, and vegetation maps. Significant, mostly negative, changes in NDVI occurred in 7.3% of the area, with greater change in aquatic and barren types. Large reflectance changes due to erosion, deposition and lake drainage were evident. Oil industry-related changes such as construction of artificial islands, roads, and gravel pads were also easily identified. Regional trends showed decreases in NDVI for most vegetation types, but increases in tasseled-cap greenness (56% of study area, greatest for vegetation types with high shrub cover) and tasseled-cap wetness (11% of area), consistent with documented degradation of polygon ice wedges, indicating that increasing cover of water may be masking increases in vegetation when summarized using the water-sensitive NDVI.
The Chinese soft-shelled turtle, Pelodiscus sinensis, decreases nitrogenous excretion, reduces urea synthesis and suppresses ammonia production during emersion

SUMMARY The objective of this study was to examine the effects of 6 days of emersion on nitrogen metabolism and excretion in the Chinese soft-shelled turtle, Pelodiscus sinensis. Despite having a soft shell with a cutaneous surface that is known to be water permeable, P. sinensis lost only ~2% of body mass and was able to maintain its hematocrit and plasma osmolality, [Na+] and [Cl−] during 6 days of emersion. During emersion, it ameliorated water loss by reducing urine output, which led to a reduction (by 29–76%) in ammonia excretion. In comparison, there was a more prominent reduction (by 82–99%) in urea excretion during emersion due to a lack of water to flush the buccopharyngeal epithelium, which is known to be the major route of urea excretion. Consequently, emersion resulted in an apparent shift from ureotely to ammonotely in P. sinensis. Although urea concentration increased in several tissues, the excess urea accumulated could only account for 13–22% of the deficit in urea excretion. Hence, it can be concluded that a decrease (~80%) in urea synthesis occurred in P. sinensis during the 6 days of emersion. Indeed, emersion led to significant decreases in the activity of some ornithine–urea cycle enzymes (argininosuccinate synthetase/argininosuccinate lyase and arginase) from the liver of P. sinensis. As a decrease in urea synthesis occurred without the accumulation of ammonia and total free amino acids, it can be deduced that ammonia production through amino acid catabolism was suppressed with a proportional reduction in proteolysis in P. sinensis during emersion. Indeed, calculated results revealed that there could be a prominent decrease (~88%) in ammonia production in turtles after 6 days of emersion. In summary, despite being ureogenic and ureotelic in water, P. sinensis adopted a reduction in ammonia production, instead of increased urea synthesis, as the major strategy to ameliorate ammonia toxicity and problems associated with dehydration during terrestrial exposure.
A Novel Regulatory Gene, Tri10, Controls Trichothecene Toxin Production and Gene Expression

ABSTRACT We report here the characterization of Tri10, a novel regulatory gene within the trichothecene gene cluster. Comparison of Tri10 genomic and mRNA sequences revealed that removal of a single 77-bp intron provided a 1,260-bp open reading frame, encoding a 420-amino-acid protein. Disruption ofTri10 in Fusarium sporotrichioidesabolished T-2 toxin production and dramatically decreased the transcript accumulation for four trichothecene genes (Tri4, Tri5, Tri6, and Tri101) and an apparent farnesyl pyrophosphate synthetase (Fpps) gene. Conversely, homologous integration of a disruption vector by a single upstream crossover event significantly increased T-2 toxin production and elevated the transcript accumulation of the trichothecene genes andFpps. Further analysis revealed that disruption ofTri10, and to a greater extent the disruption ofTri6, increased sensitivity to T-2 toxin under certain growth conditions. Although Tri10 is conserved inFusarium graminearum and Fusarium sambucinum and clearly plays a central role in regulating trichothecene gene expression, it does not show any significant matches to proteins of known or predicted function or to motifs except a single transmembrane domain. We suggest a model in which Tri10acts upstream of the cluster-encoded transcription factor TRI6 and is necessary for full expression of both the other trichothecene genes and the genes for the primary metabolic pathway that precedes the trichothecene biosynthetic pathway, as well as for wild-type levels of trichothecene self-protection. We further suggest the presence of a regulatory loop where Tri6 is not required for the transcription of Tri10 but is required to limit the expression of Tri10.
Protein–protein docking benchmark version 4.0

We updated our protein–protein docking benchmark to include complexes that became available since our previous release. As before, we only considered high‐resolution complex structures that are nonredundant at the family–family pair level, for which the X‐ray or NMR unbound structures of the constituent proteins are also available. Benchmark 4.0 adds 52 new complexes to the 124 cases of Benchmark 3.0, representing an increase of 42%. Thus, benchmark 4.0 provides 176 unbound–unbound cases that can be used for protein–protein docking method development and assessment. Seventeen of the newly added cases are enzyme‐inhibitor complexes, and we found no new antigen‐antibody complexes. Classifying the new cases according to expected difficulty for protein–protein docking algorithms gives 33 rigid body cases, 11 cases of medium difficulty, and 8 cases that are difficult. Benchmark 4.0 listings and processed structure files are publicly accessible at http://zlab.umassmed. edu/benchmark/ Proteins 2010. © 2010 Wiley‐Liss, Inc.
C-C Chemokine Receptor 3 Antagonism by the β-Chemokine Macrophage Inflammatory Protein 4, a Property Strongly Enhanced by an Amino-Terminal Alanine-Methionine Swap1

Allergic reactions are characterized by the infiltration of tissues by activated eosinophils, Th2 lymphocytes, and basophils. The β-chemokine receptor CCR3, which recognizes the ligands eotaxin, eotaxin-2, monocyte chemotactic protein (MCP) 3, MCP4, and RANTES, plays a central role in this process, and antagonists to this receptor could have potential therapeutic use in the treatment of allergy. We describe here a potent and specific CCR3 antagonist, called Met-chemokine β 7 (Ckβ7), that prevents signaling through this receptor and, at concentrations as low as 1 nM, can block eosinophil chemotaxis induced by the most potent CCR3 ligands. Met-Ckβ7 is a more potent CCR3 antagonist than Met- and aminooxypentane (AOP)-RANTES and, unlike these proteins, exhibits no partial agonist activity and is highly specific for CCR3. Thus, this antagonist may be of use in ameliorating leukocyte infiltration associated with allergic inflammation. Met-Ckβ7 is a modified form of the β-chemokine macrophage inflammatory protein (MIP) 4 (alternatively called pulmonary and activation-regulated chemokine (PARC), alternative macrophage activation-associated C-C chemokine (AMAC) 1, or dendritic cell-derived C-C chemokine (DCCK) 1). Surprisingly, the unmodified MIP4 protein, which is known to act as a T cell chemoattractant, also exhibits this CCR3 antagonistic activity, although to a lesser extent than Met-Ckβ7, but to a level that may be of physiological relevance. MIP4 may therefore use chemokine receptor agonism and antagonism to control leukocyte movement in vivo. The enhanced activity of Met-Ckβ7 is due to the alteration of the extreme N-terminal residue from an alanine to a methionine.