Miracle-dz/UniFAR-FTUs huggingface dataset:
Loss of Motor Control and/or Loss of Consciousness during Breath-Hold Competitions

Since the first official world championships in breath-hold diving (1996), a sport has developed where the athletes compete in various disciplines of breath-hold diving. One of the rules is that the diver should surface from a dive without showing any signs of hypoxia. Depending on the severity of hypoxia, a diver may suffer disqualifying signs such as loss of consciousness (LOC) or loss of motor control (LMC), the latter including signs such as confusion, affected postural control, spasms or speech problems. Data was collected from the results of the major international competitions following AIDA guidelines (Association International pour le Dévelopment de l'Apnée) in 1998, 2001-2004. The data was analyzed for frequency of LOC and LMC during constant weight diving and during static apnea. In constant weight diving, the diver swims down (and up) as deeply as possible along a vertically suspended rope (current record 105 m). In static apnea, the diver strives for maximum duration, floating motionless face down in a pool (current record 8.58 min). A total of 601 static apnea (SA) performances and 596 constant weight dives were judged in the six competitions. On average, 10 % of SA, and 11 % of CW performances were disqualified due to signs of hypoxia. For the competitions in 2002-2004, a distinction was made in the rules between LOC and LMC; of a total number of 355 SA performances, 1.1 % resulted in LOC, while 9.6 % resulted in LMC. For CW, the number was 344 with 6.1 % LOC and 6.1 % LMC. Despite the relatively high incidence of dramatic signs, it is noteworthy that there have been no reports of fatal accidents or permanent injuries from any of the above-mentioned competitions. This descriptive paper shows a relatively high incidence of disqualifications due to signs of hypoxia in breath-hold competitions 1998-2004.
Mannose‐sensitive haemagglutination in the absence of piliation in Escherichia coli

The relationship between type 1 pilus structure and the mannose‐sensitive adhesin was investigated by analysing the properties of an 11.2 kb fragment of DNA derived from the chromosomal pil region of a type 1 piliated uropathogenic strain of Escherichia coli. The recombinant plasmids pHA9 and pSJH9, containing the cloned fragment, conferred a mannose‐sensitive haemagglutination (MSHA)‐positive but non‐piliated phenotype on recipient cells of ORN104. Most of the DNA sequences homologous to the pilA and hyp genes were not present in the 11.2kb insert, and the genetic information necessary for MSHA in the absence of piliation spanned a 6.5 kb region of the cloned fragment. The polypeptides expressed by pSJH9 were examined in minicells and Tn 1000 insertions in three genes encoding proteins of molecular weights 90 kD, 29 kD and 17kD abolished the MSHA phenotype.
Rapid genotyping of hepatitis C virus RNA‐isolates obtained from patients residing in Western Europe

Two rapid genotyping methods for hepatitis C virus (HCV), the line probe assay (Inno‐LiPA) and the subtype‐specific core amplification system [Okamoto et al., (1992b) Journal of General Virology 73:673‐679], were applied to 58 HCV isolates which were typed as type 1 (n=37) and type 2 (n=21) by sequence analysis of the 5′ untranslated region (5′UTR). The line probe assay targets the 5′UTR and recognized 12 subtype 1a, 25 subtype 1b, 18 subtype 2a, 2 subtype 2b and 1 subtype 2d in accordance with sequence analysis of this region. Subtype‐specific core amplification revealed 7 discrepancies among the 37 type 1 isolates when compared to LiPA. A different subtype was observed in 3 isolates (la versus 1b), 2 isolates remained untyped and 2 isolates showed a coinfection of subtype la and 1b. The first 5 discrepancies were confirmed by sequence analysis of the core region whereas the coinfection could not be confirmed. Of the 21 type 2 isolates only one could be typed by subtype‐specific core amplification. HCV RNA was detected in all 21 cases after the general first round of polymerase chain reaction (PCR). Direct sequencing of the core region indicated sequence variation as a source of failure.
Associations between Systemic Sclerosis and Thyroid Diseases

We have reviewed scientific literature about the association of systemic sclerosis (SSc) and thyroid disorders. A high incidence, and prevalence, of new cases of autoimmune thyroiditis (AT) and/or hypothyroidism have been shown in sclerodermic patients (overall in the female gender). An association among a Th1 immune-predominance, low vitamin D levels, and AT have been also shown in SSc patients. Cases of Graves’ disease (GD) have been described in SSc patients, too, according with the higher prevalence of thyroid autoimmunity. It has been also shown a higher prevalence of papillary thyroid cancer (PTC), in association with AT, in SSc patients. However, in order to confirm results about GD and thyroid cancer, studies in larger number of patients with SSc are needed. During the follow-up of SSc patients it would be appropriate to monitor carefully their thyroid status. The abovementioned data strongly suggest a periodic thyroid function follow-up in female SSc patients [showing a borderline high (although in the normal range) thyroid-stimulating hormone level, antithyroid peroxidase antibody positivity, and a small thyroid with a hypoechoic pattern], and, when necessary, appropriate treatments. In conclusion, most of the studies show an association among SSc, AT, and hypothyroidism, such as an increased prevalence of TC overall in SSc patients with AT. Only few cases of GD have been also described in SSc.
Bayesian realized-GARCH models for financial tail risk forecasting incorporating the two-sided Weibull distribution

The realized-GARCH framework is extended to incorporate the two-sided Weibull distribution, for the purpose of volatility and tail risk forecasting in a financial time series. Further, the realized range, as a competitor for realized variance or daily returns, is employed as the realized measure in the realized-GARCH framework. Sub-sampling and scaling methods are applied to both the realized range and realized variance, to help deal with inherent micro-structure noise and inefficiency. A Bayesian Markov Chain Monte Carlo (MCMC) method is adapted and employed for estimation and forecasting, while various MCMC efficiency and convergence measures are employed to assess the validity of the method. In addition, the properties of the MCMC estimator are assessed and compared with maximum likelihood, via a simulation study. Compared to a range of well-known parametric GARCH and realized-GARCH models, tail risk forecasting results across seven market indices, as well as two individual assets, clearly favour the proposed realized-GARCH model incorporating the two-sided Weibull distribution; especially those employing the sub-sampled realized variance and sub-sampled realized range.
Stochastic Modeling of Streamer Transitions

Simulations of the growth of streamers using a model based on the stochastic growth of a branching fractal tree have shown good fidelity in matching the morphology of streamers in liquids. An important aspect that has not yet been simulated is the transition between Type 1 and Type 2 streamers. This work explores the effect of a variation of the applied voltage during streamer growth as well as the effect of differing amounts of available electrons during growth. Neither of these assumptions produced the experimentally observed transitions. These results produced a possible approach that could modify the step length in the simulation in relation to the electric field that may trigger the transition. It also points out that the transition might be due to hydrodynamic instabilities that are not captured by the model.
The Gravity Model Approach: An Application on the Eco Was Trading Bloc

Abstract This study aims to examine bilateral trade flows across ECOWAS-15 nations with the use of a panel and cross section for the period of 1981-2013. The methodology carried out to achieve this objective involves the use of various techniques of estimation for the gravity model (Static and dynamic). More specifically, this study aims to investigate the formational impact of regional trade integration agreements on trade flows within a group of countries using the same currencies and ECOWAS at large. The main use of regional variables into gravity models is intended to determine whether RTAs lead to trade creation, or diversion. The results show the presence of a strong relationship among the factors of both RIAs and trade flows.
Type 2 diabetes associated variants of KCNQ1 strongly confer the risk of cardiovascular disease among the Saudi Arabian population

Abstract Genome-wide association studies have identified several loci associated with an increased risk for cardiovascular disease (CVD) and type 2 diabetes (T2D). Polymorphisms within the KCNQ1 (potassium voltage-gated channel, KQT-like subfamily, member 1) gene are consistently associated with T2D in a number of populations. The current study was undertaken to evaluate the association of 3 polymorphisms of KCNQ1 (rs2237892, rs151290 and rs2237895) with T2D and/or CVD. Patients diagnosed with either T2D (320 patients), CVD (250 patients) or both (60 patients) and 516 healthy controls were genotyped by TaqMan assay run on a real time PCR thermocycler. A statistically significant association was found for SNPs rs151290 (OR = 1.76; 95%CI = 1.02-3.05; p = 0.0435) and rs2237895 (OR = 2.49; 95%CI = 1.72-3.61; p < 0.0001) with CVD. SNP rs151290 (OR = 7.43; 95%CI = 1.00-55.22; p = 0.0499) showed a strong association in patients with both T2D and CVD. None of the SNPs showed any significant association with T2D. Haploview analysis showed that the ACC (rs151290, rs2237892 and rs2237895) haplotype is the most significant risk allele combination for CVD, while CCA is the most significant risk haplotype for co-morbidity with T2D. KCNQ1 polymorphism at SNPs rs151290 and rs2237895 is strongly associated with CVD in this population, but presented no association with T2D.
Substance Use Among Iranian Cardiac Surgery Patients and Its Effects on Short-Term Outcome

BACKGROUND: We assessed the prevalence of substance use among patients undergoing coronary artery bypass graft and valve surgery in northwest Iran. We evaluated the postoperative complications and in-hospital mortality of patients with substance dependence and abuse. METHODS: In this prospective, observational study, we interviewed 600 patients during the preoperative visit in a tertiary referral educational hospital in northwest Iran. The definition of substance abuse and dependence was according to DSM-IV criteria. Postoperative complications and in-hospital mortality of patients with substance (cigarette, opium, and alcohol) dependence and abuse were compared with those in control patients who did not use these substances. RESULTS: In 600 studied patients, the prevalence of cigarette smoking was 42.1% (ex-smokers 26.0% and current smokers 16.1%), prevalence of opium use was 12.0% (opium abuse 7.0% and opium dependence 5.0%), and alcohol consumption was 8.1% (alcohol abuse 7.4% and alcohol dependence 0.7%). The prevalence of cigarette smoking was 58.9% in men and 7.6% in women (P = 0.001). Postoperative cardiac complications in current smokers (21.5%) and ex-smokers (20.5%) were not significantly different from the control group (28.2%). Also, pulmonary complications were not different in current smokers (24.7%) and ex-smokers (17.9%) from the control group (26.8%; P = 0.196). However, in men, pulmonary complications in current smokers were more prevalent than in the control group (P = 0.044). In opium and alcohol dependents and abusers, postoperative complications were not statistically different from the control group (all P values >0.05). No increase was observed regarding in-hospital mortality in patients with substance use. CONCLUSIONS: In cardiac surgery patients in northwest Iran, the prevalence of cigarette smoking is relatively low (very low in women), as is alcohol use, compared with Western countries; however, opium use is twice as prevalent. We found higher pulmonary complication rates in men who smoked, but no increase in postoperative cardiopulmonary complications and in-hospital mortality rates in patients who abused opium and consumed alcohol.
Expression analysis of RNA-binding motif gene on Y chromosome (RBMY) protein isoforms in testis tissue and a testicular germ cell cancer-derived cell line (NT2).

BACKGROUND RNA-binding motif gene on Y chromosome (RBMY), a germ cell-specific nuclear protein, is known as a key factor in spermatogenesis and disorders associated with this protein have been recognized to be related to male infertility. Although it was suggested that this protein could have different functions during germ cell development, no studies have been conducted to uncover the mechanism of this potential function yet. Here, we analyzed the expression pattern of RBMY protein isoforms in testis compared to NT2, a testicular germ cell cancer-derived cell line, to test probability of differential expression of RBMY protein isoforms at different spermatogenesis stages. METHODS Full length and a segment of RBMY gene were cloned and expressed in E. coli. Anti-human RBMY antibody was produced in rabbit using the recombinant proteins as antigen. Western-blot and immunofluorescence were conducted for detection and comparison of RBMY protein isoforms. RESULTS Selected segment of RBMY protein resulted in producing a mono-specific antibody. As results shows, only the longest isoform of RBMY was expressed at protein level in NT2 cell line, while three isoforms of this protein were detected in the whole testis lysate. CONCLUSION The results imply that different alternative splicing may happen in testis cells and probably difference of RBMY function during spermatogenesis is due to the differential expression of RBMY protein isoforms. These results and further experiments on RBMY isoforms can help to obtain a better understanding of the function of this protein, which may increase our knowledge about spermatogenesis and causes of male infertility.
LATENCY RELAXATION AND A THEORY OF MUSCULAR MECHANO‐CHEMICAL COUPLING

The purpose of this paper, broadly speaking, is two-fold. First, there will be discussed certain aspects of the latency relaxation (LR), the minute pre-contractile elongation of a stimulated muscle that occurs in the latter half of the latent period, a phenomenon first observed by Rauh (1922). Evidence will be presented to show that the latency relaxation is a real lengthening of the muscle’s contractile material that intervenes between the instant of stimulation and the usual shortening or tension development in a contraction. Further, certain studies of the LR will be considered that suggest it is an indication of a process by which myosin is activated for contraction. The second part of this paper will be concerned with a kinetic theory of mechano-chemical coupling which, in part, is based on the particular significance assigned to the LR. The LR was discovered by Rauh in the course of some experiments designed to settle the then almost 70-year-old question as to whether the latent period exists a t all. To forestall criticism that the demonstration of a mechanical latency merely represented an inertial delay in the response of the registering device, Rauh used an extremely sensitive mechano-optical isometric lever system and photographically recorded the mechanical change during only the first few milliseconds of the twitch response of initially tensed frog sartorii and gastrocnemii. To his astonishment, his records not only exhibited a true delay in the onset of tension development, but they also included a transient negative tension change (the LR) during the latter half of the latent period.
Safety of thrombolysis in stroke mimics: an observational cohort study from an urban teaching hospital in Sweden

Objectives Acute stroke management has changed dramatically over the recent years, where a timely assessment is driven by the expanding treatment options of acute ischaemic stroke. This increases the risk in treating non-stroke patients (stroke mimics) with a possibly hazardous intravenous thrombolysis treatment (IVT). Setting Patients of the thrombolysis registry of Södersjukhuset AB, a secondary health centre in Stockholm, were retrospectively studied to determine complications and outcome after IVT in strokes and stroke mimics. Participants Consecutively, 674 recruited patients from 1 January 2008 to 1 December 2013 were analysed regarding demographics and outcome at 3 months after onset of symptoms. Results Ischaemic stroke was confirmed in 625 patients (93%), and 48 patients (7%) were stroke mimics. Patients with strokes were older than stroke mimics 72 (IQR: 64–81) vs 54 years (IQR 40–67), p<0.0001. Antihypertensive and antithrombotic treatment were more common in patients with stroke (p<0.0001 and p=0.006, respectively). National Institute of Health Stroke Scale did not differ at time of presentation. Excellent outcome defined as modified Rankin Scale score 0–1, at 3 months, was less common in stroke than in stroke mimics (50% vs 87.5%, p<0.0001). No stroke mimic had a symptomatic intracerebral haemorrhage. Age of less than 40 years may be a predictor for a patient to be a stroke mimic (OR: 8.7, 95% CI: 3.2 to 24.0, p<0.0001). Conclusions Stroke mimics receiving IVT had a more favourable outcome compared with patients with stroke, and showed no haemorrhagic complications. Age below 40 years may be a predictor for stroke mimics.
Epileptic Focus Localization Using Discrete Wavelet Transform Based on Interictal Intracranial EEG

Over the past decade, with the development of machine learning, discrete wavelet transform (DWT) has been widely used in computer-aided epileptic electroencephalography (EEG) signal analysis as a powerful time-frequency tool. But some important problems have not yet been benefitted from DWT, including epileptic focus localization, a key task in epilepsy diagnosis and treatment. Additionally, the parameters and settings for DWT are chosen empirically or arbitrarily in previous work. In this work, we propose a framework to use DWT and support vector machine (SVM) for epileptic focus localization problem based on EEG. To provide a guideline in selecting the best settings for DWT, we decompose the EEG segments in seven commonly used wavelet families to their maximum theoretical levels. The wavelet and its level of decomposition providing the highest accuracy in each wavelet family are then used in a grid search for obtaining the optimal frequency bands and wavelet coefficient features. Our approach achieves promising performance on two widely-recognized intrancranial EEG datasets that are also seizure-free, with an accuracy of 83.07% on the Bern-Barcelona dataset and an accuracy of 88.00% on the UBonn dataset. Compared with existing DWT-based approaches in epileptic EEG analysis, the proposed approach leads to more accurate and robust results. A guideline for DWT parameter setting is provided at the end of the paper.
A transient analysis method to characterize the trap vertical location in nitride-trapping devices

A new method to probe the trap vertical location for nitride-trapping devices is proposed. This method requires only measuring the time dependence of gate injection at various gate voltages on a single wafer. The transient current (J) and the instantaneous electric field (E) across the top oxide can be directly obtained based on various cases of trap location. Comparisons can be made to check which case has the best consistency for the J versus E behaviors. The only assumption in this method is that the transient current J and the instantaneous E field should follow a consistent tunneling relationship at different gate voltages. The experimental results show unequivocally that electrons are trapped at the interface between top oxide and nitride for oxide grown by thermal conversion. However, for the direct-deposited top oxide the electrons are more spatially distributed in the nitride. This method is a simple and convincing tool to detect the nitride trap vertical location.
The neurophysiology of figure-ground segregation in primary visual cortex

The activity of neurons in the primary visual cortex of the awake macaque monkey was recorded while the animals were viewing full screen arrays of either oriented line segments or moving random dots. A square patch of the screen was made to perceptually pop out as a circumscribed figure by virtue of differences between the orientation or the direction of motion of the texture elements within that patch and the surround. The animals were trained to identify the figure patches by making saccadic eye movements towards their positions. Almost every cell gave a significantly larger response to elements belonging to the figure than to similar elements belonging to the background. The figure- ground response enhancement was present along the entire extent of the patch and was absent as soon as the receptive field was outside the patch. The strength of the effect had no relation with classical receptive field properties like orientation or direction selectivity or receptive field size. The response enhancement had a latency of 30–40 msec relative to the onset of the neuronal response itself. The results show that context modulation within primary visual cortex has a highly sophisticated nature, putting the image features the cells are responding to into their fully evaluated perceptual context.
In Vitro Metabolic Activation of Lumiracoxib in Rat and Human Liver Preparations

Recent clinical reports have suggested that the cyclooxygenase-2 inhibitor, lumiracoxib (Prexige), may cause a rare but serious hepatotoxicity in patients. In view of the close structural resemblance between lumiracoxib and diclofenac, a widely used nonsteroidal anti-inflammatory drug whose use also has been associated with rare cases of liver injury, it is possible that the toxicity of the two agents may share a common mechanism. Because it is believed that chemically reactive metabolites may play a role as mediators of diclofenac-mediated hepatotoxicity, the present in vitro study was carried out to test the hypothesis that lumiracoxib also undergoes metabolic activation when incubated with liver microsomal preparations and hepatocytes from rats and humans. By means of liquid chromatography tandem mass spectrometry and nuclear magnetic resonance spectrometry techniques, two previously unknown N-acetylcysteine (NAC) conjugates were identified, namely, 3′-NAC-4′-hydroxy lumiracoxib (M1) and 4′-hydroxy-6′-NAC-desfluoro lumiracoxib (M2), the structures of which reveal the intermediacy of an electrophilic quinone imine species. Based on the results of studies with immunoinhibitory antibodies, it was demonstrated that the formation of M1 and M2 in human liver microsomes was catalyzed by cytochrome P450 (P450) 2C9. These findings demonstrate that lumiracoxib is subject to P450-mediated bioactivation in both rat and human liver preparations, leading to the formation of a reactive intermediate analogous to species generated during the metabolism of diclofenac.