Miracle-dz/UniFAR-FTUs huggingface dataset:
Attenuated PGC-1α Isoforms following Endurance Exercise with Blood Flow Restriction.

INTRODUCTION Exercise performed with blood flow restriction simultaneously enhances the acute responses to both myogenic and mitochondrial pathways with roles in training adaptation. We investigated isoform-specific gene expression of the peroxisome proliferator-activated receptor gamma coactivator 1 and selected target genes and proteins regulating skeletal muscle training adaptation. METHODS Nine healthy, untrained males participated in a randomized, counterbalanced, crossover design in which each subject completed a bout of low-intensity endurance exercise performed with blood flow restriction (15 min cycling at 40% of V˙O2peak, BFR-EE), endurance exercise (30 min cycling at 70% of V˙O2peak, EE), or resistance exercise (4 × 10 repetitions of leg press at 70% of one-repetition maximum) separated by at least 1 wk of recovery. A single resting muscle biopsy (vastus lateralis) was obtained 2 wk before the first exercise trial (rest) and 3 h after each bout. RESULTS Total PGC-1α mRNA abundance, along with all four isoforms, increased above rest with EE only (P < 0.05) being higher than BFR-EE (P < 0.05). PGC-1α1, 2, and 4 were higher after EE compared with resistance exercise (P < 0.05). EE also increased vascular endothelial growth factor, Hif-1α, and MuRF-1 mRNA abundance above rest (P < 0.05), whereas COXIV mRNA expression increased with EE compared with BFR-EE (P < 0.05). CONCLUSION The attenuated expression of all four PGC-1α isoforms when EE is performed with blood flow restriction suggests this type of exercise provides an insufficient stimulus to activate the signaling pathways governing mitochondrial and angiogenesis responses observed with moderate- to high-intensity EE.
HIV-induced immunosuppression is associated with colonization of the proximal gut by environmental bacteria

Objectives:To evaluate the impact of HIV infection on colonization resistance in the proximal gut. Design:It was a case-control study. Methods:We contrasted microbiota composition between eight HIV-1-infected patients and eight HIV-negative controls to characterize community alteration and detect exogenous bacteria in the esophagus, stomach, and duodenum, as well as the mouth using a universal 16s ribosomal RNA gene survey and correlated the findings with HIV serostatus and peripheral blood T-cell counts. Results:HIV infection was associated with an enrichment of Proteobacteria (P=0.020) and depletion of Firmicutes (P = 0.005) in the proximal gut. In particular, environmental species Burkholderia fungorum and Bradyrhizobium pachyrhizi colonized the duodenum of HIV patients who had abnormal blood CD4+ T-cell counts but were absent in HIV-negative controls or HIV patients whose CD4+ cell counts were normal. The two species coexisted and exhibited a decreasing trend proximally toward the stomach and esophagus and were virtually absent in the mouth. B. fungorum always outnumbered B. pachyrhizi in a ratio of approximately 15 to 1 regardless of the body sites (P < 0.0001, r2 = 0.965). Their abundance was inversely correlated with CD4+ cell counts (P = 0.004) but not viral load. Overgrowth of potential opportunistic pathogens for example, Prevotella, Fusobacterium, and Ralstonia and depletion of beneficial bacteria, for example, Lactobacillus was also observed in HIV patients. Conclusions:The colonization of the duodenum by environmental bacteria reflects loss of colonization resistance in HIV infection. Their correlation with CD4+ cell counts suggests that compromised immunity could be responsible for the observed invasion by exogenous microbes.
Synchronisation of palaeoenvironmental events in the North Atlantic region during the Last Termination : a revised protocol recommended by the INTIMATE group

The North Atlantic INTIMATE group of the INQUA Palaeoclimate Commission has previously recommended an Event Stratigraphy approach for the synchronisation of records of the Last Termination using the Greenland GRIP isotopic record as the regional stratotype and INTCAL98 for the calibration of radiocarbon dates [Lowe, J.J., Hoek, W. , INTIMATE Group, 2001. Inter-regional correlation of palaeoclimatic records for the Last Glacial-Interglacial Transition: a protocol for improved precision recommended by the INTIMATE project group. Quaternary Science Reviews 20, 1175–1187]. Here, we present a revised protocol for time-stratigraphic correlation in the North Atlantic region over a more extended time period (30–8 ka). This employs the new NGRIP isotopic record and associated Greenland Ice Core Chronology 2005 (GICC05) as the regional stratotype, INTCAL04 for the calibration of radiocarbon dates, Bayesian-based statistical procedures for the construction of age models, and tephrochronology to validate correlations between regional site records. r 2008 Elsevier Ltd. All rights reserved.
MicroRNA-10b expression in node-negative breast cancer-correlation with metastasis and angiogenesis

Metastasis accounts for the majority of cases of mortality in patients with axillary lymph node-negative (ANN) breast cancer. Angiogenesis is an essential component of the metastatic pathway. Studies regarding microRNA (miR)-10b expression in patients with ANN breast cancer and the function of angiogenesis in breast cancer remain scarce. The present study was performed in order to determine the biological significance of miR-10b, and investigate the association between miR-10b and microvessel density (MVD) measured in ANN breast cancer. miR-10b expression and immunohistochemical analysis for MVD were assessed in 195 patients with ANN of invasive ductal carcinoma, including 65 cases with distant metastasis ‘poor group’, and 130 cases without any recurrence ‘good group’. miR-10b expression was higher in the ‘poor group’ (73.8%) compared with that in the ‘good group’ (51.5%; P=0.003). Multivariate logistic regression demonstrated that miR-10b retained independent prognostic significance for distant metastasis along with MVD and vascular invasion. Among 195 patients, miR-10b expression was significantly associated with tumor grade, tumor size and molecular subtypes (P<0.05). In addition, miR-10b expression was positively associated with the MVD count (r=0.370; P<0.001), tumor grade (r=0.168; P=0.019) and tumor size (r=0.175; P=0.014). The results of the current study suggest that miR-10b is a useful marker for predicting metastasis and angiogenesis in ANN breast cancer.
On the Hierarchical Structure of Self-Determined Motivation: A Test of Top-Down, Bottom-Up, Reciprocal, and Horizontal Effects

This article aimed to test some hypotheses about the hierarchical structure of self-determined motivation in two longitudinal studies. First, the authors verified the stability of global self-determined motivation and school self-determined motivation over time. Second, they tested top-down, bottom-up, reciprocal, and horizontal effects between global self-determined motivation and school self-determined motivation. In Study 1, 122 college students were evaluated on two occasions with a 5-year interval on their global and school self-determined motivation. In Study 2, 294 college students were evaluated on the same variables with a 1-year interval. Results from both studies revealed that (a) global self-determined motivation was not more stable than self-determined school motivation over time and (b) a cross-lag model including reciprocal effects between self-determined global and self-determined school motivation offered the best fit indices comparatively to a model involving only horizontal (or stability) effects. Discussion emphasizes the theoretical implications of the results.
Social Clustering of Vehicles Based on Semi-Markov Processes

Vehicle clustering is a crucial network management task for vehicular networks to address the broadcast storm problem and to cope with the rapidly changing network topology. Developing algorithms that create stable clusters is a very challenging procedure because of the highly dynamic moving patterns of vehicles and the dense topology. Previous approaches to vehicle clustering have been based on either topology-agnostic features, such as vehicle IDs or hard-to-set parameters, or have exploited very limited knowledge of vehicle trajectories. This paper develops a pair of algorithms, namely, sociological pattern clustering (SPC) and route stability clustering (RSC), the latter being a specialization of the former that exploits, for the first time in the relevant literature, the “social behavior” of vehicles, i.e., their tendency to share the same/similar routes. Both methods exploit the historic trajectories of vehicles gathered by roadside units located in each subnetwork of a city and use the recently introduced clustering primitive of virtual forces. The mobility, i.e., mobile patterns of each vehicle, is modeled as semi-Markov processes. To assess the performance of the proposed clustering algorithms, we performed a detailed experimentation by simulation to compare its behavior with that of high-performance state-of-the-art algorithms, namely, the Low-Id, DDVC, and MPBC protocols. The comparison involved the investigation of the impact of a range of parameters on the performance of the protocols, including vehicle speed and transmission range, as well as the existence and strength of social patterns, for both urban and highway-like environments. All of the received results attested to the superiority of the proposed algorithms for creating stable and meaningful clusters.
Investment Irreversibility, Real Activity and the Value Premium

We conduct an empirical investigation of an emerging strand of models, pioneered by Berk, Green and Naik (1999), relating firms' real investment behavior under investment irreversibility and asset return dynamics. The models in this literature share many of the same predictions. We first extend Cooper (2004) model and derive implications in terms of a relationship among an economically fundamental variable, namely the rate of capacity utilization, and return volatility, systematic risk and expected returns. Our evidence suggests that this economic variable explains return volatility, time variation in market beta, and is positively associated with expected returns and volatility of returns.
Effect of Particle Size on Respiratory Protection Provided by Two Types of N95 Respirators Used in Agricultural Settings

This study compared size-selective workplace protection factors (WPFs) of an N95 elastomeric respirator (ER) and an N95 filtering facepiece respirator (FFR) in agricultural environments. Twenty-five healthy farm workers ranging in age from 20 to 30 years voluntarily participated in this study. Altogether, eight farms were included representing three different types: two horse farms, three pig barns, and three grain handling sites. Subjects wore the ER and FFR while performing their daily activities, such as spreading hay, feeding livestock, and shoveling. Aerosol concentrations in an optical particle size range of 0.7–10 μm were determined simultaneously inside and outside the respirator during the first and last 15 min of a 60-min experiment. For every subject, size-selective WPFs were calculated in 1-min intervals and averaged over 30 min. For the ER, geometric mean WPFs were 172, 321, 1013, 2097, and 2784 for particle diameters of 0.7–1.0, 1.0–2.0, 2.0–3.0, 3.0–5.0, and 5.0–10.0 μm, respectively. Corresponding values for the FFR were 67, 124, 312, 909, and 2089. The 5th percentiles for the ER and FFR were higher than the assigned protection factor of 10 and varied from 28 to 250 and from 16 to 223, respectively. Results show that the N95 ER and FFR tested in the study provided an expected level of protection for workers on agricultural farms against particles ranging from 0.7 to 10 μm. WPFs for the ER were higher than the FFR for all particle size ranges. WPFs for both respirator types increased with increasing particle size.
Embryonic and not maternal trisomy causes developmental attenuation in the Ts65Dn mouse model for Down syndrome

Trisomy 21 results in Down syndrome (DS) and causes phenotypes that may result from alterations of developmental processes. The Ts65Dn mouse is the most widely used genetic and phenotypic model for DS. We used over 1,500 offspring from Ts65Dn and two nontrisomic genetically similar control strains to investigate the influence of trisomy on developmental alterations and number of offspring. For the first time, we demonstrate gross developmental attenuation of Ts65Dn trisomic offspring at embryonic day (E) 9.5 and E13.5 and show that the major determinant of the developmental changes is segmental trisomy of the embryo and not the trisomic maternal uterine environment. Maternal alleles of nontrisomic genes linked to Pde6b may also influence the development of Ts65Dn offspring. Both developmental attenuation and the contribution of trisomic and nontrisomic genes are important components in the genesis of DS phenotypes. Developmental Dynamics 239:1645–1653, 2010. © 2010 Wiley‐Liss, Inc.
Cytochrome c(y) of Rhodobacter capsulatus is attached to the cytoplasmic membrane by an uncleaved signal sequence-like anchor

During the photosynthetic growth of Rhodobacter capsulatus, electrons are conveyed from the cytochrome (cyt) bc1 complex to the photochemical reaction center by either the periplasmic cyt c2 or the membrane-bound cyt c(y). Cyt c(y) is a member of a recently established subclass of bipartite c-type cytochromes consisting of an amino (N)-terminal domain functioning as a membrane anchor and a carboxyl (C)-terminal domain homologous to cyt c of various sources. Structural homologs of cyt c(y) have now been found in several bacterial species, including Rhodobacter sphaeroides. In this work, a C-terminally epitope-tagged and functional derivative of R. capsulatus cyt c(y) was purified from intracytoplasmic membranes to homogeneity. Analyses of isolated cyt c(y) indicated that its spectral and thermodynamic properties are very similar to those of other c-type cytochromes, in particular to those from bacterial and plant mitochondrial sources. Amino acid sequence determination for purified cyt c(y) revealed that its signal sequence-like N-terminal portion is uncleaved; hence, it is anchored to the membrane. To demonstrate that the N-terminal domain of cyt c(y) is indeed its membrane anchor, this sequence was fused to the N terminus of cyt c2. The resulting hybrid cyt c (MA-c2) remained membrane bound and was able to support photosynthetic growth of R. capsulatus in the absence of the cyt c(y) and c2. Therefore, cyt c2 can support cyclic electron transfer during photosynthetic growth in either a freely diffusible or a membrane-anchored form. These findings should now allow for the first time the comparison of electron transfer properties of a given electron carrier when it is anchored to the membrane or is freely diffusible in the periplasm.
Toward a More Precise and Informative Nomenclature Describing Fetal and Neonatal Male Germ Cells in Rodents1

ABSTRACT The germ cell lineages are among the best characterized of all cell lineages in mammals. This characterization includes precise nomenclature that distinguishes among numerous, often subtle, changes in function or morphology as development and differentiation of germ cells proceed to form the gametes. In male rodents, there are at least 41 distinct cell types that occur during progression through the male germ cell lineage that gives rise to spermatozoa. However, there is one period during male germ cell development—that which occurs immediately following the primordial germ cell stage and prior to the spermatogonial stage—for which the system of precise and informative cell type terminology is not adequate. Often, male germ cells during this period are referred to simply as “gonocytes. ” However, this term is inadequate for multiple reasons, and it is suggested here that nomenclature originally proposed in the 1970s by Hilscher et al., which employs the terms M-, T1-, and T2-prospermatogonia, is preferable. In this Minireview, the history, proper utilization, and advantages of this terminology relative to that of the term gonocytes are described.
Large-area thermoelectric high-aspect-ratio nanostructures by atomic layer deposition

We report on the thermoelectric properties of large-area high-aspect-ratio nanostructures. We fabricate the structures by atomic layer deposition of conformal ZnO thin films on track-etched polycarbonate substrate. The resulting structure consists of ZnO tubules which continue through the full thickness of the substrate. The electrical and thermal properties of the structures are studied both in-plane and out-of-plane. They exhibit very low out-of-plane thermal conductivity down to 0.15 W m−1 K−1 while the in-plane sheet resistance of the films was found to be half that of the same film on glass substrate, allowing material-independent doubling of output power of any planar thin-film thermoelectric generator. The wall thickness of the fabricated nanotubes was varied within a range of up to 100 nm. The samples show polycrystalline nature with (002) preferred crystal orientation.
The deformation of microcantilever-based infrared detectors during thermal cycling

Uncooled microcantilever-based infrared (IR) detectors have recently gained interest due to their low noise equivalent temperature difference (NETD), while concurrently maintaining low costs. These properties have made them available for a wider range of applications. However, the curvature induced by residual strain mismatch severely compromises the device's performance. Therefore, to meet performance and reliability requirements, it is important to fully understand the deformation of IR detectors. In this study, bimaterial (SiNx/Al) microcantilever-based IR detectors were fabricated using surface micromachining with polyimide as a sacrificial layer. Thermo-mechanical deformation mechanisms were studied through the use of thermal cycling. A temperature chamber with accurate temperature control and an interferometer microscope were adopted in this study for thermal cycling and full-field curvature measurements. It was found that thermal cycling reduced the residual strain mismatch within the bimaterial structure and thus flattened the microcantilever-based IR detectors. Specifically, thermal cycling with a maximum temperature of 295 °C resulted in a 97% decrease in curvature of the microcantilever-based IR detectors upon return to room temperature. The thermoelastic deformation of the IR detectors was modeled using both finite element method (FEM) and analytical methods. A modified analytical solution based on plate theory was established to describe the thermoelastic mechanical responses by using a correction factor derived from FEM. Although in the current study Al and SiNx were chosen for the application of microcantilever-based IR detectors, the general experimental protocol and modeling approach can be applied to describe thermoelastic mechanical responses of bimaterial devices with different materials. Toward the end of this paper, we studied the correction factors in the modified analytical solution while varying parameters such as Young's modulus ratio, thickness ratio and coefficient of thermal expansion (CTE) mismatch to investigate the influences of these parameters.
Evaluation and comparison of human absorbed dose of 90Y-DOTA-Cetuximab in various age groups based on distribution data in rats

The organ radiation-absorbed doses have been evaluated for humans in six age groups and both genders based on animal data. After intravenous administration of 90Y-DOTA-Cetuximab to five groups of rats, they were sacrificed at exact time intervals (2, 24, 48, 72, and 96 h) and the percentage of injected dose per gram of each organ was calculated by direct counting from rat data. By using the formulation that Medical Internal Radiation Dose suggests, radiation-absorbed doses for all organs were calculated and extrapolated from rat to human. The total body absorbed dose for all groups was >22 mGy due to pure β-emission of the applied radiopharmaceutical. The effective dose resulting from an intravenously injected activity of 100 MBq is 56.7 mSv for a 60-kg female adult and 60.3 mSv for a 73-kg male adult. The results demonstrated the usefulness of this method for estimation of β-absorbed dose in humans.
Natural Analogue Constraints on Europa's Non‐ice Surface Material

Non‐icy material on the surface of Jupiter's moon Europa is hypothesized to have originated from its subsurface ocean and thus provide a record of ocean composition and habitability. The nature of this material is debated, but observations suggest that it comprises hydrated sulfate and chloride salts. Analogue spectroscopic studies have previously focused on single‐phase salts under controlled laboratory conditions. We investigated natural salts from perennially cold (<0 °C) hypersaline springs and characterized their reflectance properties at 100, 253, and 293 K. Despite similar major ion chemistry, these springs form mineralogically diverse deposits, which when measured at 100 K closely match reflectance spectra from Europa. In the most sulfate‐rich samples, we find that spectral features predicted from laboratory salts are obscured. Our data are consistent with sulfate‐dominated europan non‐icy material and further show that the emplacement of endogenic sulfates on Europa's surface would not preclude a chloride‐dominated ocean.
A conserved ATG2-GABARAP interaction is critical for phagophore closure

The intracellular trafficking pathway, macroautophagy, acts as a recycling and disposal service that can be upregulated during periods of stress, to maintain cellular homeostasis. An essential transition point in the pathway is the sealing of the immature phagophore to form an autophagosome, isolating unwanted cargo prior to lysosomal degradation. However, little mechanistic detail is known about phagophore closure. Human ATG2A and ATG2B proteins, through their interaction with WIPI proteins, are thought to be key players during phagophore closure. We have identified a highly-conserved motif driving the interaction between human ATG2 and GABARAP proteins that is in close proximity to the ATG2-WIPI4 interaction site. We show that the ATG2-GABARAP interaction mutants are unable to close phagophores resulting in blocked autophagy, similar to ATG2A/ATG2B double knock-out cells. In contrast, the ATG2-WIPI4 interaction mutant fully restored phagophore closure and autophagy flux, similar to wild type ATG2. Taken together, we provide new mechanistic insights to the requirements for ATG2 function at the phagophore and suggest that an ATG2-GABARAP interaction is essential for phagophore closure, whereas ATG2-WIPI4 interaction is dispensable.
The Danish Civil Registration System

Introduction: The Danish Civil Registration System (CRS) was established in 1968, and all persons alive and living in Denmark were registered for administrative use. Content: CRS includes individual information on the unique personal identification number, name, gender, date of birth, place of birth, citizenship, identity of parents and continuously updated information on vital status, place of residence and spouses. Validity and coverage: Since 1968, CRS has recorded current and historical information on all persons living in Denmark. Among persons born in Denmark in 1960 or later it contains complete information on maternal identity. For women born in Denmark in April 1935 or later it contains complete information on all their children. CRS contains complete information on immigrations and emigrations from 1969 onwards, permanent residence in a Danish municipality from 1971 onwards, and full address in Denmark from 1977 onwards. Conclusion: CRS in connection with other registers and biobanks will continue to provide the basis for significant knowledge relevant to the aetiological understanding and possible prevention of human diseases.