Miracle-dz/UniFAR-FTUs huggingface dataset:
Fibrocartilage in the Transverse Ligament of the Human Atlas

Study Design. Immunohistochemical investigation. Objective. To determine whether molecules typical of articular cartilage are present in the transverse ligament and whether the ligament may be a target for an autoimmune response in rheumatoid arthritis. Summary of Background Data. In chronic rheumatoid arthritis there is often a marked instability of the atlantoaxial complex, and the transverse ligament can show degenerative changes that compromise its mechanical function. In some rheumatoid patients there can be an autoimmune response to cartilage link protein, aggrecan, and Type II collagen. Methods. Transverse ligaments were removed from 13 cadavers and fixed in 90% methanol. Cryosections were immunolabeled with antibodies against proteoglycans (aggrecan, link protein, and versican), glycosaminoglycans (chondroitin-4-sulfate, chondroitin-6-sulfate, dermatan sulfate, and keratan sulfate), and collagens (Types I, II, III, and VI). Results. Labeling for aggrecan and link protein was characteristic of the fibrocartilages, but versican was only detected in the fibrous regions. Equally, Types I, III, and VI collagens and keratan, dermatan, and chondroitin-4-sulfates were found throughout the ligament, but labeling for Type II collagen and chondroitin-6-sulfate was restricted to the fibrocartilages. Conclusion. The presence of molecules typical of articular cartilage (aggrecan, link protein, and Type II collagen) in the transverse ligament explains why it can be a target for destruction in rheumatoid arthritis and also suggests that it is subject to constant compression against the dens rather than only at the extremes of movement.
Purification of Legionella pneumophila major outer membrane protein and demonstration that it is a porin

We have purified the major outer membrane protein (MOMP) of Legionella pneumophila, determined that it is associated with peptidoglycan, and characterized it as a porin. To purify the MOMP, we used a simple, rapid, three-step procedure that gave us the protein in high yield. The first step of the purification procedure involved selectively extracting the MOMP from whole bacterial cells with calcium and zwitterionic detergent. The second and third steps achieved purification by ion-exchange and molecular-sieve chromatography. The dissociation of the MOMP into monomers was dependent upon the presence of a reducing agent and was enhanced by treatment at 100 degrees C. To study the relationship of the MOMP to peptidoglycan, we extracted the protein by a modification of the Rosenbusch procedure. Like the Escherichia coli porins, the MOMP was peptidoglycan associated. The MOMP was at least partially dissociated from peptidoglycan in sodium dodecyl sulfate and a high salt concentration. To study the ion channel-forming properties of the MOMP, we reconstituted the MOMP in planar lipid membranes. The MOMP formed ion-permeable channels with a single-channel conductance size of 100 picoSiemens. The MOMP channels exhibited a fourfold selectivity for cations over anions and voltage-independent gating. These findings demonstrate that the MOMP is a porin with properties similar to those of E. coli porins.
HMG-CoA reductase activation and urinary pellet cholesterol elevations in acute kidney injury.

BACKGROUND AND OBJECTIVES Experimental acute kidney injury (AKI) activates the HMG-CoA reductase (HMGCR) gene, producing proximal tubule cholesterol loading. AKI also causes sloughing of proximal tubular cell debris into tubular lumina. This study tested whether these two processes culminate in increased urinary pellet cholesterol content, and whether the latter has potential AKI biomarker utility. DESIGN, SETTING, PARTICIPANTS, & MEASUREMENTS Urine samples were collected from 29 critically ill patients with (n = 14) or without (n= 15) AKI, 15 patients with chronic kidney disease, and 15 healthy volunteers. Centrifuged urinary pellets underwent lipid extraction, and the extracts were assayed for cholesterol content (factored by membrane phospholipid phosphate content). In vivo HMGCR activation was sought by measuring levels of RNA polymerase II (Pol II), and of a gene activating histone mark (H3K4m3) at exon 1 of the HMGCR gene (chromatin immunoprecipitation assay of urine chromatin samples). RESULTS AKI+ patients had an approximate doubling of urinary pellet cholesterol content compared with control urine samples (versus normal; P < 0.001). The values significantly correlated (r, 0.5; P < 0.01) with serum, but not urine, creatinine concentrations. Conversely, neither critical illness without AKI nor chronic kidney disease raised pellet cholesterol levels. Increased HMGCR activity in the AKI+ patients was supported by three- to fourfold increased levels of Pol II, and of H3K4m3, at the HMGCR gene (versus controls or AKI- patients). CONCLUSIONS (1) Clinical AKI, like experimental AKI, induces HMGCR gene activation; (2) increased urinary pellet cholesterol levels result; and (3) urine pellet cholesterol levels may have potential AKI biomarker utility. The latter will require future testing in a large prospective trial.
Daily and seasonal variation in response to stress in captive starlings (Sturnus vulgaris): corticosterone.

Captive starlings were used to examine daily and seasonal changes in basal and stress-induced corticosterone levels. Birds were bled at 4 times during the daily cycle and during three different simulated seasons: under a short-day photoperiod (mimicking winter), under a long-day photoperiod (mimicking summer), and while undergoing a prebasic molt. Basal corticosterone samples were assayed from blood collected within 3 min of disturbance and corticosterone increases in response to handling and restraint were monitored in blood taken at 15, 30, and 45 min postdisturbance. Handling and restraint elicited robust increases in corticosterone at all times of the day and during all three seasons. Both basal and stress-induced levels varied with the time of day (with the exception of basal samples during molt). Levels were higher at night, during the bird's inactive period, and decreased during the day. These data indicate that starlings have daily rhythms in both basal corticosterone levels and in their response to stress, with more corticosterone released during the night in response to identical stimuli. Starlings also show pronounced seasonal variation in both basal and stress-induced corticosterone levels. Although birds held on short and long days had equivalent corticosterone levels, both basal and stress-induced levels were lower during molt. This parallels data from free-living birds and provides a laboratory model for studying seasonal corticosterone regulation.
Mass treatment of onchocerciasis with ivermectin: should people with epilepsy and/or growth-retardation syndromes be excluded?

Abstract In many areas of Africa where human onchocerciasis is endemic there are now programmes for mass treatment with ivermectin (Mectizan®), to eliminate the disease as a public-health problem. To determine whether those with epilepsy and/or growth-retardation syndromes (GRS) should be excluded from such mass drug administrations, literature searches of the standard biomedical databases were performed for all relevant articles published in English or French before January 2003. Cross-referencing and the retrieving of articles recommended by experts completed the search. The literature review revealed that there is insufficient evidence for an association between onchocerciasis and epilepsy or GRS. Since ivermectin does not normally cross the blood-brain barrier, the drug is unlikely to have direct pro- or anti-convulsive activity. Furthermore, an estimated 1-2 million epileptics in Africa have been treated with ivermectin, in onchocerciasis-control programmes, without any reports of serious adverse events (SAE) to the passive surveillance system for such events. As there are few data on the prevalence of GRS in Africa, it is difficult to estimate the number of GRS cases who have been treated with ivermectin or the incidence of ivermectin-related SAE among such cases. Epileptics should not be excluded from mass treatments with ivermectin unless they are actively seizing or postictal. Although those with GRS associated with chronic wasting, with or without epilepsy, should be excluded, they should be eligible for clinic-based treatment if the diagnosis of onchocerciasis is confirmed and the benefits of treatment are deemed to outweigh any potential risks.
Cerebral Venous Sinus Thrombosis in Children: A Multicenter Cohort From the United States

This study presents a large multicenter cohort of children with cerebral venous thrombosis from 5 centers in the United States and analyzes their clinical findings and risk factors. Seventy patients were included in the study (25 neonates, 35%). The age ranged from 6 days to 12 years. Thirty-eight (55%) were younger than 6 months of age, and 28 (40%) were male. Presenting features included seizures (59%), coma (30%), headache (18%), and motor weakness (21%). Common neurological findings included decreased level of consciousness (50%), papilledema (18%), cranial nerve palsy (33%), hemiparesis (29%), and hypotonia (22%). Predisposing factors were identified in 63 (90%) patients. These included infection (40%), perinatal complications (25%), hypercoagulable/hematological diseases (13%), and various other conditions (10%). Hemorrhagic infarcts occurred in 40% of the patients and hydrocephalus in 10%. Transverse sinus thrombosis was more common (73%) than sagittal sinus thrombosis (35%). Three children underwent thrombolysis, 15 patients received anticoagulation, and 49 (70%) were treated with antibiotics and hydration. Nine (13%) patients (6 of them neonates) died. Twenty-nine patients (41%) were normal, whereas 32 patients (46%) had a neurological deficit at discharge. Seizures and coma at presentation were poor prognostic indicators. In conclusion, cerebral venous thrombosis predominantly affects children younger than age 6 months. Mortality is high (25%) in neonatal cerebral venous thrombosis. Only 18 (25%) patients were treated with anticoagulation or thrombolysis.
Pupil Dilation Uncovers Extra Listening Effort in the Presence of a Single-Talker Masker

Objectives: Recent research has demonstrated that pupil dilation, a measure of mental effort (cognitive processing load), is sensitive to differences in speech intelligibility. The present study extends this outcome by examining the effects of masker type and age on the speech reception threshold (SRT) and mental effort. Design: In young and middle-aged adults, pupil dilation was measured while they performed an SRT task, in which spoken sentences were presented in stationary noise, fluctuating noise, or together with a single-talker masker. The masker levels were adjusted to achieve 50% or 84% sentence intelligibility. Results: The results show better SRTs for fluctuating noise and a single-talker masker compared with stationary noise, which replicates results of previous studies. The peak pupil dilation, reflecting mental effort, was larger in the single-interfering speaker condition compared with the other masker conditions. Remarkably, in contrast to the thresholds, no differences in peak dilation were observed between fluctuating noise and stationary noise. This effect was independent of the intelligibility level and age. Conclusions: To maintain similar intelligibility levels, participants needed more mental effort for speech perception in the presence of a single-talker masker and then with the two other types of maskers. This suggests an additive interfering effect of speech information from the single-talker masker. The dissociation between these performance and mental effort measures underlines the importance of including measurements of pupil dilation as an independent index of mental effort during speech processing in different types of noisy environments and at different intelligibility levels.
Propagation Along Thin Conductors Parallel to Interfacing Homogeneous Half-Spaces

This paper provides a detailed derivation of the complete solution to an electromagnetic wave propagating along a thin wire parallel to the interface between two homogeneous half-spaces, and by extension for multiple parallel wires. The final solution presented in this paper extends the existing theory to include the effects of half-spaces with different magnetic permeabilities, the effects of wire/s with finite conductance, and in the multiconductor case the cross boundary mutual impedances. The latter is of particular importance when considering the coupling between power lines and buried continuously earthed systems, such as counterpoise conductors or buried metallic pipelines. Drawing on the numerous existing methodologies used to solve this problem, the derivation herein utilizes only a partial Fourier transform in combination with continuity conditions to achieve a general solution, which is novel. The solution is shown to agree with earlier works after appropriate restrictions are applied. The approach also serves as a review of some of the more fundamental works on the subject, contributes to understanding the limitations of existing theory, and establishes an alternate process for further extensions in the field.
The American Psychological Association Task Force Assessment of Violent Video Games: Science in the Service of Public Interest

A task force of experts was convened by the American Psychological Association (APA) to update the knowledge and policy about the impact of violent video game use on potential adverse outcomes. This APA Task Force on Media Violence examined the existing literature, including the meta-analyses in the field, since the last APA report on media violence in 2005. Because the most recent meta-analyses were published in 2010 and reflected work through 2009, the task force conducted a search of the published studies from 2009–2013. These recently published articles were scored and assessed by a systematic evidentiary review, followed by a meta-analysis of the high utility studies, as documented in the evidentiary review. Consistent with the literature that we reviewed, we found that violent video game exposure was associated with: an increased composite aggression score; increased aggressive behavior; increased aggressive cognitions; increased aggressive affect, increased desensitization, and decreased empathy; and increased physiological arousal. The size of the effects was similar to that in prior meta-analyses, suggesting a stable result. Our task force concluded that violent video game use is a risk factor for adverse outcomes, but found insufficient studies to examine any potential link between violent video game use and delinquency or criminal behavior. Our technical report is the basis of this article.
Education as a Protective Factor Moderating the Effect of Depression on Memory Impairment in Elderly Women

Objective The cognitive reserve theory explicates individual differences observed in the clinical manifestation of dementia despite similar brain pathology. Education, a popular proxy of the cognitive reserve, has been shown to have protective effects delaying the onset of clinical symptoms including memory. This study was conducted to test whether education can moderate the negative effect of depressive mood on memory performance in elderly women residing in the community. Methods 29 elderly “unschooled” female (less than 6 years of formal education) and 49 “schooled” female (6 or more years) people were compared with regard to association between depressive mood and verbal memory functioning, which were measured by the Geriatric Depression Scale and the Elderly Verbal Learning Test, respectively. Results The results showed that completing or receiving more than primary school education significantly reduced the negative association between depressive mood and memory performance. Participants who did not complete primary schooling showed a decline in memory test scores depending on the level of depressive mood; whereas participants who have completed or received more than primary education displayed relatively stable memory function despite varying level of depressive mood. Conclusion Our findings imply that education in early life may have protective effects against memory impairment related to elderly depression.
Sodium desoxycholate-extracted treponemal antigen in an enzyme-linked immunosorbent assay for syphilis

The extraction of Treponema pallidum antigen with sodium desoxycholate, based on a previously described procedure (J. Portnoy and H.J. Magnuson, J. Immuno. 75:348-355, 1955), was used in an enzyme-linked immunosorbent assay (ELISA) test for syphilis. The antigen was prepared from T. pallidum street strain no. 14, and its overall sensitivity and specificity was compared with those of sonicated antigen preparations made with phosphate-buffered saline. The optimum serum dilution for testing and the significant absorbance reading at 490 nm were selected by examination of quantitative dilutions of 91 sera from presumably normal individuals and 92 sera from syphilitics. The time and temperature of serum and conjugate incubations were also examined. With an absorbance reading of greater than or equal to 0.2 at the 1:80 serum dilution, 88 (95.8%) of 92 sera from syphilitics were reactive in the ELISA test with desoxycholate-extracted antigen, and 82 (89.1%) were reactive with the sonicated antigen. Only one nonsyphilitic serum was reactive with each antigen. Greater sensitivity without loss in specificity was obtained with longer serum and conjugate incubations. We concluded that an ELISA test with sodium desoxycholate-extracted antigen is more sensitive than and equally specific to an ELISA with sonicated treponemal antigen.
Preferential localization of the hyperpolarization‐activated cyclic nucleotide‐gated cation channel subunit HCN1 in basket cell terminals of the rat cerebellum

Hyperpolarization‐activated and cyclic nucleotide‐gated (HCN) channels are involved in the control of neuronal excitability and plasticity. In this study, we used immunoblotting and immunohistochemical techniques to reveal the developmental expression and subcellular distribution of the HCN1 subunit in the cerebellar cortex. During postnatal development, the spatio‐temporal expression of HCN1 correlated well with the morphological events occurring during the ontogenesis of cerebellar interneurons. Using immunoblotting techniques, HCN1 was weakly detected during the first postnatal week and continued to increase throughout postnatal development, peaking at postnatal day (P)15. At the light‐microscopic level, HCN1 immunoreactivity was very weak until P7 whereas from P10–12 to adulthood it was strongly detected in the lower third of the molecular layer and in the Purkinje cell layer. HCN1 was present in axons running through the molecular layer and in the pericellular basket around Purkinje cells at P12, but in the periaxonal plexus (the pinceau) surrounding their initial segment only after P15. Using immunofluorescence, HCN1 colocalized with GAD65 and synaptophysin, demonstrating that the subunit was present in inhibitory axons and axon terminals. At the electron‐microscopic level, in adulthood, HCN1 immunoparticles were detected at postsynaptic sites in basket and Purkinje cells but most immunoparticles were found at presynaptic sites in basket cell axons and in terminals. In the axon terminals, the distribution of HCN1 was relatively uniform along the extrasynaptic plasma membrane; this was confirmed using quantitative techniques. The present findings suggest that HCN1 channels may provide a significant route for modulating co‐ordinated cerebellar synaptic transmission through basket cells.
Lung Cancer Chemoprevention with Celecoxib in Former Smokers

Ample studies suggest that the cyclooxygenase-2 (COX-2)/prostaglandin E2 (PGE2) pathway plays a pivotal role in carcinogenesis and that COX-2 inhibition may help prevent lung cancer. Therefore, we conducted a randomized, double-blind, placebo-controlled trial of the COX-2–selective inhibitor celecoxib (400 mg bid for 6 months) in former-smokers (age ≥ 45, ≥ 30 pack-years of smoking, ≥ 1 year of sustained abstinence from smoking). We assessed the impact of celecoxib on cellular and molecular events associated with lung cancer pathogenesis; the primary endpoint was bronchial Ki-67 labeling index (Ki-67 LI) after 6 months of treatment. Of 137 randomized subjects, 101 completed both baseline and 6-month bronchoscopies and were evaluable for the primary endpoint analysis. The beneficial effect on Ki-67 LI was greater in the celecoxib arm (versus placebo) in a mixed-effects analysis (P = 0.0006), and celecoxib significantly decreased Ki-67 LI by an average of 34%, whereas placebo increased Ki-67 LI by an average of 3.8% (P = 0.04; t test). In participants who crossed over to the other study arm at 6 months (all of whom had received 6 months of celecoxib at the end of a 12 months treatment period), the decreases in Ki-67 LI correlated with a reduction and/or resolution of lung nodules on computed tomography. Celecoxib significantly reduced plasma c-reactive protein and interleukin-6 mRNA and protein and increased 15(S)-hydroxy-eicosatetraenoic acid levels in bronchoalveolar lavage (BAL) samples. The baseline ratio of COX-2 to 15-hydroxyprostaglandin dehydrogenase mRNA in BAL cells was a significant predictive marker of Ki-67 response to celecoxib (P = 0.002). Our collective findings support the continued investigation of celecoxib for lung cancer chemoprevention in former smokers at a low risk of cardiovascular disease. Cancer Prev Res; 4(7); 984–93. ©2011 AACR.
Anaerobic digestion of crude glycerol as sole substrate in mixed reactor

Utilization of crude glycerol (CG) from the biodiesel industry in the production of biogas offers a perspective of further energy generation, which may result into the drop of biodiesel costs on the developing world market. This contribution is focused on anaerobic treatment of CG as a single substrate in mixed laboratory reactors. Experiences from long-term operation of mixed reactors processing either untreated or acidulated CG are discussed. The possibility of cofermentation of washing water (WW) from biodiesel production with CG was also attempted. It was demonstrated that long-term mesophilic anaerobic treatment of CG as the only substrate is possible. Except for nitrogen, and possibly phosphorus, the addition of other nutrients is unnecessary. Processing of both non-acidulated and acidulated CG in laboratory mixed reactors inoculated with suspended sludge resulted in a stable operation with high specific methane production (0.328 L/g chemical oxygen demand (COD) for non-acidulated CG and 0.345 L/g COD for acidulated CG), regarding organic loading rate of up to 4 g COD/(L·d). Due to the considerable content of dissolved inorganic salts in CG it is recommended to dilute this substrate with water to prevent the accumulation of salts and inhibition of the biomass activity. WW was proved to be a problematic substrate for anaerobic cofermentation with CG because its addition to the reactor caused a decrease in the pH value and biogas production.