Miracle-dz/UniFAR-FTUs huggingface dataset:
Methane Emission Estimates by the Global High-Resolution Inverse Model Using National Inventories

We present a global 0.1° × 0.1° high-resolution inverse model, NIES-TM-FLEXPART-VAR (NTFVAR), and a methane emission evaluation using the Greenhouse Gas Observing Satellite (GOSAT) satellite and ground-based observations from 2010–2012. Prior fluxes contained two variants of anthropogenic emissions, Emissions Database for Global Atmospheric Research (EDGAR) v4.3. 2 and adjusted EDGAR v4.3. 2 which were scaled to match the country totals by national reports to the United Nations Framework Convention on Climate Change (UNFCCC), augmented by biomass burning emissions from Global Fire Assimilation System (GFASv1.2) and wetlands Vegetation Integrative Simulator for Trace Gases (VISIT). The ratio of the UNFCCC-adjusted global anthropogenic emissions to EDGAR is 98%. This varies by region: 200% in Russia, 84% in China, and 62% in India. By changing prior emissions from EDGAR to UNFCCC-adjusted values, the optimized total emissions increased from 36.2 to 46 Tg CH4 yr−1 for Russia, 12.8 to 14.3 Tg CH4 yr−1 for temperate South America, and 43.2 to 44.9 Tg CH4 yr−1 for contiguous USA, and the values decrease from 54 to 51.3 Tg CH4 yr−1 for China, 26.2 to 25.5 Tg CH4 yr−1 for Europe, and by 12.4 Tg CH4 yr−1 for India. The use of the national report to scale EDGAR emissions allows more detailed statistical data and country-specific emission factors to be gathered in place compared to those available for EDGAR inventory. This serves policy needs by evaluating the national or regional emission totals reported to the UNFCCC.
Automated Detection of Conifer Seedlings in Drone Imagery Using Convolutional Neural Networks

Monitoring tree regeneration in forest areas disturbed by resource extraction is a requirement for sustainably managing the boreal forest of Alberta, Canada. Small remotely piloted aircraft systems (sRPAS, a.k.a. drones) have the potential to decrease the cost of field surveys drastically, but produce large quantities of data that will require specialized processing techniques. In this study, we explored the possibility of using convolutional neural networks (CNNs) on this data for automatically detecting conifer seedlings along recovering seismic lines: a common legacy footprint from oil and gas exploration. We assessed three different CNN architectures, of which faster region-CNN (R-CNN) performed best (mean average precision 81%). Furthermore, we evaluated the effects of training-set size, season, seedling size, and spatial resolution on the detection performance. Our results indicate that drone imagery analyzed by artificial intelligence can be used to detect conifer seedling in regenerating sites with high accuracy, which increases with the size in pixels of the seedlings. By using a pre-trained network, the size of the training dataset can be reduced to a couple hundred seedlings without any significant loss of accuracy. Furthermore, we show that combining data from different seasons yields the best results. The proposed method is a first step towards automated monitoring of forest restoration/regeneration.
Assessment of Integrated Water Vapor Estimates from the iGMAS and the Brazilian Network GNSS Ground-Based Receivers in Rio de Janeiro

There is pressing demand for knowledge improvement of the integrated water vapor (IWV) distribution in regions affected by heat islands that are associated with extreme rainfall events such as in the metropolitan area of Rio de Janeiro (MARJ). This work assessed the suitability and evaluation of the spatiotemporal distribution of Global Navigation Satellite Systems (GNSS) IWV from the cooperation of the International GNSS Monitoring and Assessment System (iGMAS) and the National Observatory (Observatório Nacional, ON) of Brazil, from the Brazilian Network for Continuous Monitoring (RBMC), and IWV products from Moderate Resolution Imaging Spectroradiometer (MODIS) and radiosonde, jointly with surface meteorological data, in two sectors of the state of Rio de Janeiro from February 2015–August 2018. High variability of the near surface air temperature (T) and relative humidity (RH) were observed among eight meteorological sites. The mean T differences between sites, up to 4.4 °C, led to mean differences as high as 3.1 K for weighted mean temperature (Tm) and hence 0.83 mm for IWV differences. Local grid points of MODIS IWV estimates had relatively good agreement with the GNSS-derived IWV, with mean differences from –2.4–1.1 mm for the daytime passages of the satellites TERRA and AQUA and underestimation from –9 mm to –3 mm during nighttime overpasses. A contrasting behavior was found in the radiosonde IWV estimates compared with the estimates from GNSS. There were dry biases of 1.4 mm (3.7% lower than expected) by radiosonde IWV during the daytime, considering that all other estimates were unbiased and the differences between IWVGNSS and IWVRADS were consistent. Based on the IWV comparisons between radiosonde and GNSS at nighttime, the atmosphere over the radiosonde site is about 1.2 mm and 2.3 mm wetter than that over the RBMC RIOD and iGMAS RDJN stations, respectively. The atmosphere over the site RIOD was 1.2 mm wetter than over that of RDJN for all three-hour means. These results showed that there were important variabilities in the meteorological conditions and in the distribution of water vapor in the MERJ. The data from the iGMAS RDJN station were feasible, together with those from the RBMC, MODIS, and radiosonde data, to investigate IWV in the region with occurrence of heat islands and peculiar physiographic and meteorological characteristics. This work recommends the magnification of the GNSS network in the State of Rio de Janeiro with the use of complete meteorological station data collocated near every GNSS receiver, aiming to improve local IWV estimates and serving as additional support for operational numerical assimilation, weather forecast, and nowcast of extreme rainfall and flooding events.
High-Quality Cloud Masking of Landsat 8 Imagery Using Convolutional Neural Networks

The Landsat record represents an amazing resource for discovering land-cover changes and monitoring the Earth’s surface. However, making the most use of the available data, especially for automated applications ingesting thousands of images without human intervention, requires a robust screening of cloud and cloud-shadow, which contaminate clear views of the land surface. We constructed a deep convolutional neural network (CNN) model to semantically segment Landsat 8 images into regions labeled clear-sky, clouds, cloud-shadow, water, and snow/ice. For training, we constructed a global, hand-labeled dataset of Landsat 8 imagery; this labor-intensive process resulted in the uniquely high-quality dataset needed for the creation of a high-quality model. The CNN model achieves results on par with the ability of human interpreters, with a total accuracy of 97.1%, omitting only 3.5% of cloud pixels and 4.8% of cloud shadow pixels, which is seven to eight times fewer missed pixels than the masks distributed with the imagery. By harnessing the power of advanced tensor processing units, the classification of full images is I/O bound, making this approach a feasible method to generate masks for the entire Landsat 8 archive.
To what extent does pharmaceutical company research in South Africa reflect the countries burden of disease

This study compares pharmaceutical company research on new medicines in South Africa with the country’s burden of disease and describes the process and criteria that companies use to set their research priorities. A quantitative survey of pharmaceutical companies shows that company research conducted from 2000 to 2003 is moderately associated with the country’s burden of disease estimates for 2000. The degree of association is dependent on which measures of company research and burden of disease are compared, and which comparative statistic is used. A qualitative analysis of company interviews reveals that feasibility of clinical trials, market forces, and environmental factors are core criteria for company research priority setting. The burden of disease, although important, is not a sole criterion, and has considerable limitations. Furthermore, this study reveals the complex nature of health priority setting by pharmaceutical companies and thus can assist policy decision makers in identifying practical strategies to encourage research in diseases of need by pharmaceutical companies. MPH Research Report: J Hoerter 0310496H iii
Comparison of Bi-Hemispherical and Hemispherical-Conical Configurations for In Situ Measurements of Solar-Induced Chlorophyll Fluorescence

During recent decades, solar-induced chlorophyll fluorescence (SIF) has shown to be a good proxy for gross primary production (GPP), promoting the development of ground-based SIF observation systems and supporting a greater understanding of the relationship between SIF and GPP. However, it is unclear whether such SIF-oriented observation systems built from different materials and of different configurations are able to acquire consistent SIF signals from the same target. In this study, we used four different observation systems to measure the same targets together in order to investigate whether SIF from different systems is comparable. Integration time (IT), reflectance, and SIF retrieved from different systems with hemispherical-conical (hemi-con) and bi-hemispherical (bi-hemi) configurations were also evaluated. A newly built prism system (SIFprism, using prism to collect both solar and target radiation) has the shortest IT and highest signal to noise ratio (SNR). Reflectance collected from the different systems showed small differences, and the diurnal patterns of both red and far-red SIF derived from different systems showed a marginal difference when measuring the homogeneous vegetation canopy (grassland). However, when the target is heterogeneous, e.g., the Epipremnum aureum canopy, the values and diurnal pattern of far-red SIF derived from systems with a bi-hemi configuration were obviously different with those derived from the system with hemi-con configuration. These results demonstrate that different SIF systems are able to acquire consistent SIF for landscapes with a homogeneous canopy. However, SIF retrieved from bi-hemi and hemi-con configurations may be distinctive when the target is a heterogeneous (or discontinuous) canopy due to the different fields of view and viewing geometries. Our findings suggest that the bi-hemi configuration has an advantage to measure heterogeneous canopies due to the large field of view for upwelling sensors being representative for the footprint of the eddy covariance flux measurements.
Forest Degradation Assessment Based on Trend Analysis of MODIS-Leaf Area Index: A Case Study in Mexico

: Assessing forest degradation has been a challenging task due to the generally slow-changing nature of the process, which demands long periods of observation and high frequency of records. This research contributes to efforts aimed at detecting forest degradation by analyzing the trend component of the time series of Leaf Area Index (LAI) collected by the Moderate Resolution Imaging Spectroradiometer (MODIS) over Central Mexico from 2002 to 2017. The analysis of the trend component is proposed to overcome the challenge of identifying very subtle and gradual changes that can be undetected if only the raw time series is examined. Additionally, the use of LAI as an alternative to other widely used indexes (e.g., Normalize Difference Vegetation Index and Enhanced Vegetation Index) facilitates consideration of the structural changes evident from degradation though not necessarily observable with spectral indices. Overall, results indicate that 52% of the study area has experienced positive trends of vegetation change (i.e., increasing LAI), 37% has remained unchanged, and 11% exhibits some level of forest degradation. Particularly, the algorithm estimated that 0.6% (385 km2) is highly degraded, 5.3% (3406 km2) moderately degraded, and 5.1% (3245 km2) slightly degraded. Most of the moderate and highly degraded areas are distributed over the east side of the study area and evergreen broadleaf appears to be the most affected forest type. Model validation resulted an accuracy of 63%. Some actions to improve this accuracy are suggested, but also a different approach to validate this type of study is suggested as an area of opportunity for future research.
Long-Term Spatial and Temporal Monitoring of Cyanobacteria Blooms Using MODIS on Google Earth Engine: A Case Study in Taihu Lake

As cyanobacteria blooms occur in many types of inland water, routine monitoring that is fast and accurate is important for environment and drinking water protection. Compared to field investigations, satellite remote sensing is an efficient and effective method for monitoring cyanobacteria blooms. However, conventional remote sensing monitoring methods are labor intensive and time consuming, especially when processing long-term images. In this study, we embedded related processing procedures in Google Earth Engine, developed an operational cyanobacteria bloom monitoring workflow. Using this workflow, we measured the spatiotemporal patterns of cyanobacteria blooms in China’s Taihu Lake from 2000 to 2018. The results show that cyanobacteria bloom patterns in Taihu Lake have significant spatial and temporal differentiation: the interannual coverage of cyanobacteria blooms had two peaks, and the condition was moderate before 2006, peaked in 2007, declined rapidly after 2008, remained moderate and stable until 2015, and then reached another peak around 2017; bays and northwest lake areas had heavier cyanobacteria blooms than open lake areas; most cyanobacteria blooms primarily occurred in April, worsened in July and August, then improved after October. Our analysis of the relationship between cyanobacteria bloom characteristics and environmental driving factors indicates that: from both monthly and interannual perspectives, meteorological factors are positively correlated with cyanobacteria bloom characteristics, but as for nutrient loadings, they are only positively correlated with cyanobacteria bloom characteristics from an interannual perspective. We believe reducing total phosphorous, together with restoring macrophyte ecosystem, would be the necessary long-term management strategies for Taihu Lake. Our workflow provides an automatic and rapid approach for the long-term monitoring of cyanobacteria blooms, which can improve the automation and efficiency of routine environmental management of Taihu Lake and may be applied to other similar inland waters.
Two-Dimensional Attention-Based LSTM Model for Stock Index Prediction

This paper presents a two-dimensional attention-based long short-memory (2D-ALSTM) model for stock index prediction, incorporating input attention and temporal attention mechanisms for weighting of important stocks and important time steps, respectively. The proposed model is designed to overcome the long-term dependency, stock selection, and stock volatility delay problems that negatively affect existing models. The 2D-ALSTM model is validated in a comparative experiment involving the two attention-based models multi-input LSTM (MI-LSTM) and dual-stage attention-based recurrent neural network (DARNN), with real stock data being used for training and evaluation. The model achieves superior performance compared to MI-LSTM and DARNN for stock index prediction on a KOSPI100 dataset.
Geometric Algebra in Nonsinusoidal Power Systems: A Case of Study for Passive Compensation

New-generation power networks, such as microgrids, are being affected by the proliferationof nonlinear electronic systems, resulting in harmonic disturbances both in voltage and current thataffect the symmetry of the system. This paper presents a method based on the application of geometricalgebra (GA) to the resolution of power flow in nonsinusoidal single-phase electrical systems for thecorrect determination of its components to achieve passive compensation of true quadrature current.It is demonstrated that traditional techniques based on the concepts of Budeanu, Fryze or IEEE1459fail to determine the interaction between voltage and current and therefore, are not suitable for beingused as a basis for the compensation of nonactive power components. An example is included thatdemonstrates the superiority of GA method and is compared to previous work where GA approachesand traditional methods have also been used.
Projecting Mammal Distributions in Response to Future Alternative Landscapes in a Rapidly Transitioning Region

Finding balance between the needs of people and wildlife is an essential component of planning sustainable landscapes. Because mammals make up a diverse and ecologically important taxon with varying responses to human disturbance, we used representative mammal species to examine how alternative land-use policies might affect their habitats and distributions in the near future. We used wildlife detections from camera traps at 1591 locations along a large-scale urban to wild gradient in northern Virginia, to create occupancy models which determined land cover relationships and the drivers of contemporary mammal distributions. From the 15 species detected, we classified five representative species into two groups based on their responses to human development; sensitive species (American black bears and bobcats) and synanthropic species (red foxes, domestic cats, and white-tailed deer). We then used the habitat models for the representative species to predict their distributions under four future planning scenarios based on strategic versus reactive planning and high or low human population growth. The distributions of sensitive species did not shrink drastically under any scenario, whereas the distributions of synanthropic species increased in response to anthropogenic development, but the magnitude of the response varied based on the projected rate of human population growth. This is likely because most sensitive species are dependent on large, protected public lands in the region, and the majority of projected habitat losses should occur in non-protected private lands. These findings illustrate the importance of public protected lands in mitigating range loss due to land use changes, and the potential positive impact of strategic planning in further mitigating mammalian diversity loss in private lands.
Spatio-Temporal Variations of Carbon Use Efficiency in Natural Terrestrial Ecosystems and the Relationship with Climatic Factors in the Songnen Plain, China

The Songnen Plain (SNP) is an important grain production base, and is designated as an ecological red-line as a protected area in China. Natural ecosystems such as the ecological protection barrier play an important role in maintaining the productivity and sustainability of farmland. Carbon use efficiency (CUE), defined as the ratio of net primary productivity (NPP) to gross primary productivity (GPP), represents the ecosystem capacity of transferring carbon from the atmosphere to terrestrial biomass. The understanding of the CUE of natural ecosystems in protected farmland areas is vital to predicting the impact of global change and human disturbances on carbon budgets and evaluating ecosystem functions. To date, the changes in CUE at different time scales and their relationships with climatic factors have yet to be fully understood. CUE and the response to land surface phenology are also deserving attention. In this study, variations in ecosystem CUE in the SNP during 2001–2015 were investigated using Moderate-Resolution Imaging Spectroradiometer (MODIS) GPP and NPP data products estimated using the Carnegie-Ames-Stanford approach (CASA) model. The relationships between CUE and phenological and climate factors were explored. The results showed that ecosystem CUE fluctuated over time in the SNP. The lowest and highest CUE values mainly occurred in May and October, respectively. At seasonal scale, average CUE followed a descending order of Autumn > Summer > Spring. The CUE of mixed forest was greater than that of other ecosystems at both monthly and seasonal scales. Land surface phenology plays an important role in the regulation of CUE. The earlier start (SOS), the later end (EOS) and longer length (LOS) of the growing season would contribute increasing of CUE. Precipitation and temperature affected CUE positively in most areas of the SNP. These findings help explain the CUE of natural ecosystems in the protected farmland areas and improve our understanding of ecosystem carbon allocation dynamics in temperate semi-humid to semi-arid transitional region under climate and phenological fluctuations.
BlueConnect: Decomposing all-reduce for deep learning on heterogeneous network hierarchy

As deep neural networks get more complex and input datasets get larger, it can take days or even weeks to train a deep neural network to the desired accuracy. Therefore, enabling distributed deep learning at a massive scale is critical, since it offers the potential to reduce the training time from weeks to hours. In this paper, we present BlueConnect, an efficient communication library for distributed deep learning that is highly optimized for popular GPU-based platforms. BlueConnect decomposes a single all-reduce operation into a large number of parallelizable reduce-scatter and all-gather operations to exploit the trade-off between latency and bandwidth, and adapt to a variety of network configurations. Therefore, each individual operation can be mapped to a different network fabric and take advantage of the best performing implementation for the corresponding fabric. According to our experimental results on two system configurations, BlueConnect can outperform the leading industrial communication library by wide margin, and the BlueConnect integrated Caffe2 can significantly reduce synchronization overhead by 87% on 192 GPUs for Resnet-50 training over prior schemes.
Adjusting Emergent Herbaceous Wetland Elevation with Object-Based Image Analysis, Random Forest and the 2016 NLCD

Emergent herbaceous wetlands are characterized by complex salt marsh ecosystems that play a key role in diverse coastal processes including carbon storage, nutrient cycling, flood attenuation and shoreline protection. Surface elevation characterization and spatiotemporal distribution of these ecosystems are commonly obtained from LiDAR measurements as this low-cost airborne technique has a wide range of applicability and usefulness in coastal environments. LiDAR techniques, despite significant advantages, show poor performance in generation of digital elevation models (DEMs) in tidal salt marshes due to large vertical errors. In this study, we present a methodology to (i) update emergent herbaceous wetlands (i.e., the ones delineated in the 2016 National Land Cover Database) to present-day conditions; and (ii) automate salt marsh elevation correction in estuarine systems. We integrate object-based image analysis and random forest technique with surface reflectance Landsat imagery to map three emergent U.S. wetlands in Weeks Bay, Alabama, Savannah Estuary, Georgia and Fire Island, New York. Conducting a hyperparameter tuning of random forest and following a hierarchical approach with three nomenclature levels for land cover classification, we are able to better map wetlands and improve overall accuracies in Weeks Bay (0.91), Savannah Estuary (0.97) and Fire Island (0.95). We then develop a tool in ArcGIS to automate salt marsh elevation correction. We use this ‘DEM-correction’ tool to modify an existing DEM (model input) with the calculated elevation correction over salt marsh regions. Our method and tool are validated with real-time kinematic elevation data and helps correct overestimated salt marsh elevation up to 0.50 m in the studied estuaries. The proposed tool can be easily adapted to different vegetation species in wetlands, and thus help provide accurate DEMs for flood inundation mapping in estuarine systems.