Miracle-dz/UniFAR-FTUs huggingface dataset:
Long-term warming alters the composition of Arctic soil microbial communities.

Despite the importance of Arctic soils in the global carbon cycle, we know very little of the impacts of warming on the soil microbial communities that drive carbon and nutrient cycling in these ecosystems. Over a 2-year period, we monitored the structure of soil fungal and bacterial communities in organic and mineral soil horizons in plots warmed by greenhouses for 18 years and in control plots. We found that microbial communities were stable over time but strongly structured by warming. Warming led to significant reductions in the evenness of bacterial communities, while the evenness of fungal communities increased significantly. These patterns were strongest in the organic horizon, where temperature change was greatest and were associated with a significant increase in the dominance of the Actinobacteria and significant reductions in the Gemmatimonadaceae and the Proteobacteria. Greater evenness of the fungal community with warming was associated with significant increases in the ectomycorrhizal fungi, Russula spp. , Cortinarius spp. , and members of the Helotiales suggesting that increased growth of the shrub Betula nana was an important mechanism driving this change. The shifts in soil microbial community structure appear sufficient to account for warming-induced changes in nutrient cycling in Arctic tundra as climate warms.
Age-related differences in the normal human cornea: a laser scanning in vivo confocal microscopy study

Aims: To quantify and establish baseline normative data for age-related differences in cellular and innervation density in the normal, healthy, human cornea using laser scanning in vivo confocal microscopy. Methods: Cross-sectional study of 85 normal subjects assessed via corneal topography and laser scanning in vivo confocal microscopy. Results: Mean age was 38±16 years (range 18–87 years) and 60% of subjects were female. Anterior keratocyte density declined by 0.9% per year (r = −0.423, p<0.001), posterior keratocyte density declined by 0.3% per year (r = −0.250, p = 0.021) and endothelial cell density declined by 0.5% per year (r = −0.615, p<0.001). Sub-basal nerve fibre density declined by 0.9% per year (r = −0.423, p<0.001). No association was observed between age and basal epithelial cell density, or between age and central corneal thickness, corneal astigmatism or horizontal corneal diameter (p>0.05). No association was observed between subject gender and corneal cell or innervation density. Conclusions: Using laser scanning in vivo confocal microscopy this study highlights a significant, and relatively linear, reduction in keratocyte and endothelial cell density with increasing subject age. Interestingly, corneal sub-basal nerve fibre density also significantly decreases with increasing age. In vivo laser scanning confocal microscopy provides a safe, non-invasive method for the establishment of normative data and assessment of alterations in human corneal microstructure following surgery or disease processes.
A comparison of latanoprost and timolol in primary open-angle glaucoma and ocular hypertension. A 12-week study.

OBJECTIVE To evaluate the intraocular pressure (IOP)-reducing effect and the side effects of latanoprost (PhXA41), a new phenyl-substituted prostaglandin F2 alpha-isopropyl ester analogue, in patients with elevated IOP, using timolol maleate as the reference drug. METHODS A total of 184 patients with primary open-angle glaucoma or ocular hypertension at 35 medical centers participated in this randomized double-masked study. The patients were randomized to receive either 0.005% latanoprost once daily or 0.5% timolol maleate twice daily, for a period of 12 weeks. Intraocular pressure was measured 24 hours after the administration of timolol, at 2, 4, 8, and 12 weeks of treatment. RESULTS Latanoprost reduced IOP at the end of 12 weeks by 6.2 +/- 2.7 mm Hg (mean +/- SD) (26.8%), while timolol reduced IOP by 4.4 +/- 2.3 mm Hg (19.9%). At all visits latanoprost reduced IOP significantly more than timolol did. The main ocular side effects observed in both groups were conjunctival hyperemia and smarting. The main systemic side effect was a reduced pulse rate, which occurred in patients treated with timolol. CONCLUSIONS The results of this study demonstrated that 0.005% latanoprost taken once daily is well tolerated and more effective in reducing IOP than 0.5% timolol taken twice daily. Thus, latanoprost may become an important choice for the medical treatment of glaucoma.
9-(5-Bromo-1H-indol-3-yl)-1,2,3,4,5,6,7,8,9,10-decahydroacridine-1,8-dione dimethyl sulfoxide monosolvate

In the title compound, C21H19BrN2O2·C2H6OS, the indole ring system is essentially planar, with a maximum deviation of 0.050 (3) Å for the non-bridgehead C atom adjacent to the N atom. The two cyclohex-2-enone rings adopt half-chair conformations. An intramolecular C—H⋯O hydrogen bond occurs. The solvent molecule exhibits minor disorder of the S atom [site occupancies = 0.8153 (16) and 0.1847 (18)]. In the crystal, molecules are linked by N—H⋯O hydrogen bonds, forming layers parallel to the bc plane.
Growing up with a mother with depression: an interpretative phenomenological analysis

The aim of this study was to explore the childhood experience of living with a parent with depression from a retrospective point of view. Five women between 39 and 47 years of age, who grew up with a mother with depression, were interviewed about their current perspectives on their childhood experiences. Interviews were semi-structured and the data were analyzed using interpretative phenomenological analysis. Data analysis led to a narrative organized in two parts. The first part (retrospective understanding of childhood experiences) reports on feelings of desolation contrasted to exceptional support, context-related dwelling on own experiences, and growing into a caring role as a way to keep standing. The second part (towards an integration of childhood experiences in adult realities) evidences ongoing processes of growing understanding of the situation at home, coping with own vulnerabilities, making the difference in their current family life and finding balance in the continued bond with the parents. This retrospective investigation of adults’ perspectives on their childhood experiences gave access to aspects of their experience that remain underexposed in research based on data from children and adolescents.
Comparison of spectroscopy technologies for improved monitoring of cell culture processes in miniature bioreactors

Cell culture process development requires the screening of large numbers of cell lines and process conditions. The development of miniature bioreactor systems has increased the throughput of such studies; however, there are limitations with their use. One important constraint is the limited number of offline samples that can be taken compared to those taken for monitoring cultures in large‐scale bioreactors. The small volume of miniature bioreactor cultures (15 mL) is incompatible with the large sample volume (600 µL) required for bioanalysers routinely used. Spectroscopy technologies may be used to resolve this limitation. The purpose of this study was to compare the use of NIR, Raman, and 2D‐fluorescence to measure multiple analytes simultaneously in volumes suitable for daily monitoring of a miniature bioreactor system. A novel design‐of‐experiment approach is described that utilizes previously analyzed cell culture supernatant to assess metabolite concentrations under various conditions while providing optimal coverage of the desired design space. Multivariate data analysis techniques were used to develop predictive models. Model performance was compared to determine which technology is more suitable for this application. 2D‐fluorescence could more accurately measure ammonium concentration (RMSECV 0.031 g L−1) than Raman and NIR. Raman spectroscopy, however, was more robust at measuring lactate and glucose concentrations (RMSECV 1.11 and 0.92 g L−1, respectively) than the other two techniques. The findings suggest that Raman spectroscopy is more suited for this application than NIR and 2D‐fluorescence. The implementation of Raman spectroscopy increases at‐line measuring capabilities, enabling daily monitoring of key cell culture components within miniature bioreactor cultures. © 2017 American Institute of Chemical Engineers Biotechnol. Prog. , 33:337–346, 2017
Mineralization of 2,4,6-Trinitrotoleune (TNT) in Coastal Waters and Sediments

Abstract : Mineralization rates of 14C-TNT, -DNT, and -DAT were measured in surface sediments, with depth in sediment cores, and in the water column during 12 research cruises over the past 4 years in the San Francisco Bay, Chesapeake Bay, and Hawaii. Mineralization rates were also compared to uptake and incorporation rates of TNT, DNT, and DAT into the natural microbial assemblage. In general, the bacterial mineralizations rates were similar, or an order of magnitude faster, than those for organic hydrocarbons measured at the same time. Using seawater sampled from a historical UXO field, we found that while bacterial mineralization was rapid (>1 ug L-1 d-1, unfiltered water in dark), photodegradation was even faster (16 ug L-1 d-1, filtered water in light) and the combination of light and unfiltered water was greater than the sum of the two rates (103 ug L-1 d-1), suggesting either that the presence of active phytoplankton is important or photodegradation enhances bacterial mineralization.
Regional transport and metabolism of ropivacaine and its CYP3A4 metabolite PPX in human intestine

The major aim of this study was to investigate the CYP3A4 metabolism and polarized transport of ropivacaine and its metabolite 2′,6′‐pipecoloxylidide (PPX) in tissue specimens from the human small and large intestine. Ropivacaine has been shown to be effective in the treatment of ulcerative colitis in human colon. This study was conducted using a modified Ussing‐chamber technique with specimens from jejunum, ileum and colon collected from 11 patients. The local kinetics of ropivacaine and PPX were assessed from their concentration–time profiles in mucosal and serosal compartments. The permeability (Papp) in the absorptive direction for both ropivacaine and PPX increased regionally in the order jejunum < ileum < colon. Ropivacaine was not found to be subjected to any carrier‐mediated intestinal efflux. However, the CYP3A4 metabolite left the human enterocyte in a polarized manner and both the extent of CYP3A4 metabolism of ropivacaine and the extrusion of its metabolite to the mucosal chamber were more efficient in jejunum than in ileum. P‐glycoprotein was probably not involved in the metabolite extrusion. No other metabolite than PPX was found. This in‐vitro study with human intestinal tissues provides new mechanistic insights into regional transport and metabolism of drugs.
Lumbar Scheuermann's: A Clinical Series and Classification

Scheuermann's disease of the thoracic spine is a well-defined entity, although its exact etiology is unknown. In the thoracolumbar or lumbar spine however, the criteria are much less strict for the application of this eponym. A retrospective review of all the cases of lumbar Scheuermann's disease seen at the Texas Scottish Rite Hospital revealed two distinct radiographic pictures. These consisted of a “classic” Scheurermann's and an “atypical” type characterized by vertebral end plate changes, disc space narrowing, and anterior Schmorl's nodes, but not otherwise fulfilling Sorenson's criteria. This group tended to occur in more athletic adolescents or those with a history of increased axial stress to the spine. A subgrouping of atypical Scheuermann's disease is proposed and includes acute traumatic intraosseous disc herniation. Based on these findings, a classification of lumbar Scheuermann's disease is proposed.
Modulation of Ca2+ signals by phosphatidylinositol‐linked novel D1 dopamine receptor in hippocampal neurons

Recent evidence indicates the existence of a putative novel phosphatidylinositol‐linked D1 dopamine receptor in brain that mediates phosphatidylinositol hydrolysis via activation of phospholipase Cβ. The present work was designed to characterize the Ca2+ signals regulated by this phosphatidylinositol‐linked D1 dopamine receptor in primary cultures of hippocampal neurons. The results indicated that stimulation of phosphatidylinositol‐linked D1 dopamine receptor by its newly identified selective agonist SKF83959 induced a long‐lasting increase in basal [Ca2+]i in a time‐ and dose‐dependent manner. Stimulation was observable at 0.1 μm and reached the maximal effect at 30 μm. The [Ca2+]i increase induced by 1 μm SKF83959 reached a plateau in 5 ± 2.13 min, an average 96 ± 5.6% increase over control. The sustained elevation of [Ca2+]i was due to both intracellular calcium release and calcium influx. The initial component of Ca2+ increase through release from intracellular stores was necessary for triggering the late component of Ca2+ rise through influx. We further demonstrated that activation of phospholipase Cβ/inositol triphosphate was responsible for SKF83959‐induced Ca2+ release from intracellular stores. Moreover, inhibition of voltage‐operated calcium channel or NMDA receptor‐gated calcium channel strongly attenuated SKF83959‐induced Ca2+ influx, indicating that both voltage‐operated calcium channel and NMDA receptor contribute to phosphatidylinositol‐linked D1 receptor regulation of [Ca2+]i.
Efficiency of model‐based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci

Accurate detection of offspring resulting from hybridization between individuals of distinct populations has a range of applications in conservation and population genetics. We assessed the hybrid identification efficiency of two methods (implemented in the structure and newhybrids programs) which are tailored to identifying hybrid individuals but use different approaches. Simulated first‐ and second‐generation hybrids were used to assess the performance of these two methods in detecting recent hybridization under scenarios with different levels of genetic divergence and varying numbers of loci. Despite the different approaches of the methods, the hybrid detection efficiency was generally similar and neither of the two methods outperformed the other in all scenarios assessed. Interestingly, hybrid detection efficiency was only minimally affected by whether reference population allele frequency information was included or not. In terms of genotyping effort, efficient detection of F1 hybrid individuals requires the use of 12 or 24 loci with pairwise FST between hybridizing parental populations of 0.21 or 0.12, respectively. While achievable, these locus numbers are nevertheless higher than the number of loci currently commonly applied in population genetic studies. The method of structure seemed to be less sensitive to the proportion of hybrids included in the sample, while newhybrids seemed to perform slightly better when individuals from both backcross and F1 hybrid classes were present in the sample. However, separating backcrosses from purebred parental individuals requires a considerable genotyping effort (at least 48 loci), even when divergence between parental populations is high.
HLA-B*39 allele confers susceptibility to osteoarticular complications in human brucellosis.

OBJECTIVE To determine the contribution of HLA gene polymorphism toward susceptibility to osteoarticular focal forms of human brucellosis. METHODS A total of 57 patients with brucellosis, of whom 23 had osteoarticular complications, and 73 healthy volunteers were genotyped for HLA class I and class II antigens by a polymerase chain reaction-sequence specific primer technique. RESULTS The HLA-B*39 allele was present in significantly more patients with osteoarticular complications than in the other patients (35% vs 3%; p = 0.0006, OR 15.684, 95% CI 3.453-71.231), or in the controls. CONCLUSION The increased presence of the HLA-B39 genotype in patients with brucellosis with clinical osteoarticular manifestations suggests that this genotype confers susceptibility to developing severe osteoarticular focal forms of the disease.
International school‐based interventions for preventing obesity in children

The purpose of this article was to review international (excluding the United States) school‐based interventions for preventing obesity in children published between 1999 and 2005. A total of 21 such interventions were found from Australia (1), Austria (1), Canada (1), Chile (1), France (1), Germany (3), Greece (1), New Zealand (1), Norway (1), Singapore (1) and the United Kingdom (9). The grade range of these interventions was from pre‐school to high school with the majority (17) from elementary schools. Nine of these interventions targeted nutrition behaviours followed by seven aiming to modify both physical activity and nutrition behaviours. Only five interventions in international settings were based on any explicit behavioural theory which is different than the interventions developed in the United States. Majority of the interventions (9) were one academic year long. It can be speculated that if the interventions are behavioural theory‐based, then the intervention length can be shortened. All interventions that documented parental involvement successfully influenced obesity indices. Most interventions (16) focused on individual‐level behaviour change approaches. Most published interventions (16) used experimental designs with at least 1‐year follow‐up. Recommendations from international settings for enhancing the effectiveness of school‐based childhood obesity interventions are presented.
Evolution and Phylogenetic Importance of Endocarp and Seed Characters in Viburnum (Adoxaceae)

Recent phylogenetic analyses based on molecular markers have resulted in a solid phylogeny of Viburnum with 12 well‐defined clades. This has allowed us to focus on character evolution, endocarp and seed characters in particular. Members of Viburnum bear drupes that differ considerably between clades. Characters such as pyrene shape and grooving, number of fibrous layers, seed coat anatomy, and seed rumination are phylogenetically highly valuable. Our results largely agree with the results based on molecular data and provide several additional insights. The position of V. clemensae as sister to the rest of Viburnum is supported by several characters. The early diversification of V. clemensae might explain its highly derived features. Furthermore, our results give an indication of the possible paraphyly of the Megalotinus clade, confirm the paraphyly of Hara’s section Solenotinus, and support the split of Hara’s section Odontotinus into four well‐defined clades. Endocarp and seed characters are mainly useful at the level of individual clades. Several characters, however, are useful at higher taxonomic levels. The presence of small, amorphous crystals in the endosperm, for example, is most likely to be apomorphic for Viburnum within the order Dipsacales.
Anti-Tr antibodies as markers of paraneoplastic cerebellar degeneration and Hodgkin’s disease

Background: Preliminary studies suggested that anti-Tr antibodies identify patients with paraneoplastic cerebellar degeneration (PCD) and Hodgkin disease (HD). Objective: To extend the clinical–immunologic analysis to 28 patients with anti-Tr antibodies. Methods: Anti-Tr antibodies were detected by immunohistochemistry. A competitive inhibition assay was used to ascertain if anti-Tr antibodies of different sera identify common epitopes. Anti-Tr immunoglobulin G (IgG) subclass distribution was determined by immunohistochemistry using monoclonal antibodies against human IgG isotypes. Tr immunoreactivity was analyzed in tumor sections using biotinylated anti-Tr IgG. Results: Median age of the 28 patients was 61 years (range 14 to 75 years) and 22 were male. A cerebellar syndrome was present in 27 patients and a possible limbic encephalitis in one. HD was diagnosed in 25 patients. No tumor was found in three patients; the autopsy of one of them disclosed severe loss of Purkinje cells without inflammatory infiltrates. Anti-Tr antibodies spontaneously disappeared in all patients without tumor and in 10/10 patients after successful HD treatment. Anti-Tr antibodies were absent in the serum but positive in the CSF of two patients. All positive anti-Tr sera inhibited the immunoreactivity of biotinylated anti-Tr IgG. The predominant isotypes of anti-Tr were IgG1 and IgG3. Only 1 out of the 15 HD samples studied presented anti-Tr positivity that was localized in some Reed-Sternberg cells. Conclusions: This study confirms the strong association between anti-Tr antibodies and PCD associated with HD. Anti-Tr antibodies from different patients recognize similar epitopes. Unlike other antineuronal antibodies, anti-Tr antibodies can be detected in the CSF but not in the serum and may spontaneously disappear during the follow-up, and Tr immunoreactivity is usually lacking in the tumor.
Engrailed gene expression in Drosophila imaginal discs.

Genetic and molecular analyses indicate that the Drosophila engrailed gene is required to distinguish posterior from anterior compartments in each segment of the developing animal. Here, the patterns of engrailed expression in the imaginal discs and ventral ganglion of Drosophila larvae are examined, using an antiserum against the engrailed protein and a novel image processing method to reduce non‐specific background. As expected, engrailed expression generally is restricted to cells in the posterior compartment of the discs, and the patterns of expression allow refinements in the fate maps of the discs to be made. More significant is the finding that expression of the gene is highly variable in different regions of posterior compartments, suggesting that engrailed may do more than simply specify ‘posteriorness’. In the ventral ganglion engrailed appears to be expressed by a subset of cells, primarily in the posterior regions of each segment. In wing discs from animals that are homozygous for the en1 mutation, the pattern of expression of the gene is altered, as opposed to being simply reduced uniformly in the posterior cells.
Influence of relative humidity on aerosol radiative forcing: An ACE‐Asia experiment perspective

[1] We present direct radiometric observations of aerosol radiative forcing during the ACE-Asia experiment (March and April of 2001). The observational analysis is based on radiometer data obtained from the NOAA ship Ronald H. Brown, and shipboard measurements of the aerosol chemical and scattering properties are used to construct a model of the aerosol optical properties for use in radiative transfer calculations. The model is validated against the radiometric observations and is used to diagnose the aerosol and environmental factors that contribute to the observed forcings. The mean value of aerosol optical thickness observed during the ACE-Asia cruise over the Sea of Japan was 0.43 (±0.25) at 500 nm, while the single-scattering albedo was 0.95 (±0.03) at ambient relative humidity. We find a large correlation (r2 = 0.69) between single-scattering albedo and relative humidity. Aerosols caused a mean decrease in the diurnally averaged solar radiation of 26.1 W m−2 at the surface, while increasing the atmospheric solar absorption and top of atmosphere reflected solar radiation by 13.4 W m−2 and 12.7 W m−2, respectively. The mean surface aerosol forcing efficiency (forcing per unit optical depth) over the Sea of Japan was −60 W m−2 and is influenced by high values of relative humidity. We show that decreasing the relative humidity to 55% enhances the aerosol forcing efficiency by as much as 6–10 W m−2. This dependency on relative humidity has implications for comparisons of aerosol forcing efficiencies between different geographical locations.