Miracle-dz/UniFAR-FTUs huggingface dataset:
Experimental Confirmation of the Theory of Elastic Moduli of Fabric Composites

Some experiments for measuring the elastic moduli of fabric composites are con ducted in order to evaluate the theoretical predictions developed by the authors in their previous work. Experimental results coincide very well with the theory for 8 harness satin carbon/epoxy systems. There exists some discrepancy between theories for con strained and unconstrained local warping in the case of plain weave composites. Ex perimental results are bounded by these two theories. The dependency of elastic moduli on laminate ply number is discovered in plain weave composites. The ratio of ply thickness to thread width is also a very important parameter, which strongly affects the elastic moduli of plain weave composites. The in-plane shear modulus of fabric composites is mainly influenced by fiber volume fraction, which varies linearly with ng . Off-axis properties of fabric composites are measured and compared with theories. The experimental results essentially confirm the validity of the author's theoretical predictions.
Stable eusociality via maternal manipulation when resistance is costless

In many eusocial species, queens use pheromones to influence offspring to express worker phenotypes. While evidence suggests that queen pheromones are honest signals of the queen’s reproductive health, here I show that queen’s honest signaling can result from ancestral maternal manipulation. I develop a mathematical model to study the coevolution of maternal manipulation, offspring resistance to manipulation, and maternal resource allocation. I assume that (1) maternal manipulation causes offspring to be workers against offspring’s interests; (2) offspring can resist at no direct cost, as is thought to be the case with pheromonal manipulation; and (3) the mother chooses how much resource to allocate to fertility and maternal care. In the coevolution of these traits, I find that maternal care decreases, thereby increasing the benefit that offspring obtain from help, which in the long run eliminates selection for resistance. Consequently, ancestral maternal manipulation yields stable eusociality despite costless resistance. Additionally, ancestral manipulation in the long run becomes honest signaling that induces offspring to help. These results indicate that both eusociality and its commonly associated queen honest signaling can be likely to originate from ancestral manipulation.
Cosmological theory without singularities.

A theory of gravitation is constructed in which all homogeneous and isotropic solutions are nonsingular, and in which all curvature invariants are bounded. All solutions for which curvature invariants approach their limiting values approach de Sitter space. The action for this theory is obtained by a higher-derivative modification of Einstein's theory. We expect that our model can easily be generalized to solve the singularity problem also for anisotropic cosmologies.
Effect of Transfer Layer on Ultra Low Friction of CNx Coating under Blowing Dry Ar

In order to clarify the ultra low friction mechanism of Carbon Nitride (CNx) coatings under blowing dry Ar, thickness and area of transfer layers on mating surface were in-situ observed with an optical microscope during sliding against a sapphire hemisphere under blowing dry Ar. During sliding, thickness of transfer layer from CNx coating to a sapphire hemisphere increased and leaded to ultra low friction. When thickness and area of transfer layer was thick and small respectively, ultra low friction was observed. The result showed that the coefficient of friction decreased from 0.18 to 0.003 and remained constant throughout the friction test. It was confirmed the formation of a graphite-like transfer layer with Raman analysis and Auger Electron Spectroscopy (AES).
Growth and characterization of bismuth perovskite thin films for integrated magneto-optical isolator applications

In this thesis, we discuss the motivation for integrated magneto-optical isolators and explain why the orthoferrite is such an attractive materials class for this purpose. We then derive from first physical principles the dependence of Faraday rotation, absorption, and certain figures of merit on the material's dielectric tensor elements. Next, we use pulsed laser deposition to grow thin films of BiFeO3 on MgO (001) and SrTiO3 (001) substrates. After optimizing growth conditions to obtain high quality films, we characterize the films' crystal structure with two-dimensional x-ray diffraction. We then examine the magnetic, optical, and magneto-optical properties of these films. We find that the highly textured films grown on SrTiO3 are monoclinic with an out-of-plane c-axis aligned with the (001) direction of the substrate and approximate pseudocubic lattice parameters of a = b = 4.04 A, c = 3.95 A, and 90' = -0.88'. These films are weakly magnetic, with a magnetization of 1.2 emu/cm3 at an applied field of 10 kOe; highly absorptive, with an average absorption coefficient of 910 cm-1; and possess a low specific Faraday rotation of 320/cm at 1.8 kOe of applied field. As expected, we find that the magneto-optical figure of merit is negligible for this material due to its high absorption, which we attribute to a thin surface layer of phase separated bismuth and iron oxides caused by bismuth segregation during growth. We offer additional explanations for these values and show the first results of newer, more promising work with mixed cation perovskites. Thesis Supervisor: Caroline A. Ross Title: Professor of Materials Science & Engineering
Essential Domains of Schizosaccharomyces pombe Rad8 Required for DNA Damage Response

Schizosaccharomyces pombe Rad8 is a conserved protein homologous to S. cerevisiae Rad5 and human HLTF that is required for error-free postreplication repair by contributing to polyubiquitylation of PCNA. It has three conserved domains: an E3 ubiquitin ligase motif, a SNF2-family helicase domain, and a family-specific HIRAN domain. Data from humans and budding yeast suggest that helicase activity contributes to replication fork regression and template switching for fork restart. We constructed specific mutations in the three conserved domains and found that both the E3 ligase and HIRAN domains are required for proper response to DNA damage caused by a variety of agents. In contrast, mutations in the helicase domain show no phenotypes in a wild-type background. To determine whether Rad8 functionally overlaps with other helicases, we compared the phenotypes of single and double mutants with a panel of 23 nonessential helicase mutants, which we categorized into five phenotypic groups. Synthetic phenotypes with rad8∆ were observed for mutants affecting recombination, and a rad8 helicase mutation affected the HU response of a subset of recombination mutants. Our data suggest that the S. pombe Rad8 ubiquitin ligase activity is important for response to a variety of damaging agents, while the helicase domain plays only a minor role in modulating recombination-based fork restart during specific forms of replication stress.
Armodafinil in the treatment of sleep/wake disorders

Excessive sleepiness (ES) is a major but underestimated public health concern associated with significant impairments in alertness/wakefulness and significant morbidity. The term ES has been used in the sleep medicine literature for years, but due to its nonspecific symptoms (ie tiredness or fatigue), it frequently goes unrecognized or is misdiagnosed in primary care. In some cases ES arises due to poor sleep habits or self-imposed sleep deprivation; however, ES is also a key component of a number of sleep/wake disorders and multiple medical and psychiatric disorders. Identification and treatment of ES is critical to improve the quality of life and well-being of patients and for the safety of the wider community. The inability of patients to recognize the nature, extent, and symptomatic profile of sleep/wake disorders requires vigilance on the part of healthcare professionals. Interventions to address ES and its associated impairments, treatment of the underlying sleep/wake disorder, and follow-up are a priority given the potential for serious consequences if left untreated. Wakefulness-promoting agents are available that treat ES associated with sleep/wake disorders. This review examines current approaches for managing this debilitating and potentially life-threatening condition, focusing on the place of armodafinil as a wakefulness-promoting agent.
Time Curves: Folding Time to Visualize Patterns of Temporal Evolution in Data

We introduce time curves as a general approach for visualizing patterns of evolution in temporal data. Examples of such patterns include slow and regular progressions, large sudden changes, and reversals to previous states. These patterns can be of interest in a range of domains, such as collaborative document editing, dynamic network analysis, and video analysis. Time curves employ the metaphor of folding a timeline visualization into itself so as to bring similar time points close to each other. This metaphor can be applied to any dataset where a similarity metric between temporal snapshots can be defined, thus it is largely datatype-agnostic. We illustrate how time curves can visually reveal informative patterns in a range of different datasets.
Age‐related molecular reorganization at the node of Ranvier

In myelinated axons, action potential conduction is dependent on the discrete clustering of ion channels at specialized regions of the axon, termed nodes of Ranvier. This organization is controlled, at least in part, by the adherence of myelin sheaths to the axolemma in the adjacent region of the paranode. Age‐related disruption in the integrity of internodal myelin sheaths is well described and includes splitting of myelin sheaths, redundant myelin, and fluctuations in biochemical constituents of myelin. These changes have been proposed to contribute to age‐related cognitive decline; in previous studies of monkeys, myelin changes correlate with cognitive performance. In the present study, we hypothesize that age‐dependent myelin breakdown results in concomitant disruption at sites of axoglial contact, in particular at the paranode, and that this disruption alters the molecular organization in this region. In aged monkey and rat optic nerves, immunolabeling for voltage‐dependent potassium channels of the Shaker family (Kv1.2), normally localizing in the adjacent juxtaparanode, were mislocalized to the paranode. Similarly, immunolabeling for the paranodal marker caspr reveals irregular caspr‐labeled paranodal profiles, suggesting that there may be age‐related changes in paranodal structure. Ultrastructural analysis of paranodal segments from optic nerve of aged monkeys shows that, in a subset of myelinated axons with thick sheaths, some paranodal loops fail to contact the axolemma. Thus, age‐dependent myelin alterations affect axonal protein localization and may be detrimental to maintenance of axonal conduction. J. Comp. Neurol. 495:351–362, 2006. © 2006 Wiley‐Liss, Inc.
Thermal and Mechanical Properties of Flip Chip Package with Au Stud Bump

The Au stud bumps offer a low cost flip chip solution for low I/O (input/output) count ICs and fine pitch packaging applications. The thermo-mechanical reliability of the flip chip package with Au stud bump was investigated in this study. Flip chip solder joints were fabricated using the Au stud bumps and Sn surface finish. And two different types of reliability test was done with and without the underfill process. Isothermal aging study was performed to investigate the formation and growth of the intermetallic compound (IMC) layer at the solder/ metallization interface. The micro structural change of the Au stud solder joints were characterized using scanning electron microscopy, energy dispersive X-ray spectroscopy. Results showed that before aging for 250 h, AuSn4 and (Cu,Au)3Sn IMC formed and after aging for 250 h Cu3Sn IMC formed and grew as the aging time got longer. Effect on the mechanical reliability of the Au stud solder joints was also studied using shear (bonding) tester, and the temperature cycle test was chosen for the thermo-mechanical reliability evaluation of the Au stud solder joints. [doi:10.2320/matertrans.MD201209]
Role of soluble receptor for advanced glycation end products on endotoxin-induced lung injury.

RATIONALE The interaction of receptor for advanced glycation end products (RAGE) and its ligands often leads to inflammatory processes or tissue injury, although the effect of the blockade of RAGE signaling on lung injury remains to be investigated. OBJECTIVES Using a murine model of lung injury induced by intratracheal lipopolysaccharide (LPS), we evaluated RAGE expression in the airspace and the effect of recombinant soluble RAGE (sRAGE) on LPS-induced lung injury. METHODS First, the expression of sRAGE in bronchoalveolar lavage (BAL) fluid was determined at 24 hours after intratracheal instillation of LPS or phosphate-buffered saline. Next, to evaluate the effect of sRAGE, BAL fluid was collected for cell counting and measurements of lung permeability and cytokine concentrations 24 hours after intratracheal LPS in the mice with or without intraperitoneal administration of sRAGE 1 hour after the instillation. In another series, lungs were sampled for histopathology and detection of apoptotic cells. The activation of nuclear factor (NF)-kappaB was analyzed 4 hours after LPS instillation. MEASUREMENTS AND MAIN RESULTS In response to LPS challenge, a RAGE isoform of 48 kD was detected in the BAL fluid. Treatment with sRAGE significantly attenuated the increases in neutrophil infiltration, lung permeability, production of inflammatory cytokines, NF-kappaB activation, and apoptotic cells in the lung as well as development of pathologic changes after LPS instillation. CONCLUSIONS RAGE plays an important role in the pathogenesis of LPS-induced lung injury in mice. It was suggested that sRAGE should be tested as a treatment modality in other models of acute lung injury.
k-way Hypergraph Partitioning via n-Level Recursive Bisection

We develop a multilevel algorithm for hypergraph partitioning that contracts the vertices one at a time. Using several caching and lazy-evaluation techniques during coarsening and refinement, we reduce the running time by up to two-orders of magnitude compared to a naive $n$-level algorithm that would be adequate for ordinary graph partitioning. The overall performance is even better than the widely used hMetis hypergraph partitioner that uses a classical multilevel algorithm with few levels. Aided by a portfolio-based approach to initial partitioning and adaptive budgeting of imbalance within recursive bipartitioning, we achieve very high quality. We assembled a large benchmark set with 310 hypergraphs stemming from application areas such VLSI, SAT solving, social networks, and scientific computing. We achieve significantly smaller cuts than hMetis and PaToH, while being faster than hMetis. Considerably larger improvements are observed for some instance classes like social networks, for bipartitioning, and for partitions with an allowed imbalance of 10%. The algorithm presented in this work forms the basis of our hypergraph partitioning framework KaHyPar (Karlsruhe Hypergraph Partitioning).
Debonding failure in FRP-strengthened RC beams : prediction and suppression

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Trust, but verify: The necessity of empirical verification in quantitative neurobiology

The preferred procedure for estimating neuron number has been the subject of intense discussion. Sampling error, systematic bias, and the physical properties of the tissue examined all contribute to the possibility that estimates may not reflect actual neuron number. Even when restricting analysis to a particular, well‐defined structure such as dorsal root ganglia, these factors act in a manner that varies with maturity of the animal, species, fixation, processing, and neuron size. These considerations reinforce the necessity of comparing estimates with the actual number of neurons as determined by three‐dimensional reconstructions. Anat Rec (New Anat) 269:157–161, 2002. © 2002 Wiley‐Liss, Inc.
A calculus of macro-events: progress report

The need for constraining the temporal relationships among sets of related events arises in several temporal reasoning tasks, including monitoring, plan validation, planning and diagnosis. Process constructors provide an effective way of packaging related events into individual conceptual chunks, called macro-events. In this paper, we present a first attempt at defining a calculus of macro-events that extends Kowalski and Sergot's (1985) event calculus with process constructors to express effects triggered by complex combinations of event occurrences. We apply this language to model the operations of a simple gas heater and present a Prolog implementation.
Functional Analysis of the Polyketide Synthase Genes in the Filamentous Fungus Gibberella zeae (Anamorph Fusarium graminearum)

ABSTRACT Polyketides are a class of secondary metabolites that exhibit a vast diversity of form and function. In fungi, these compounds are produced by large, multidomain enzymes classified as type I polyketide synthases (PKSs). In this study we identified and functionally disrupted 15 PKS genes from the genome of the filamentous fungus Gibberella zeae. Five of these genes are responsible for producing the mycotoxins zearalenone, aurofusarin, and fusarin C and the black perithecial pigment. A comprehensive expression analysis of the 15 genes revealed diverse expression patterns during grain colonization, plant colonization, sexual development, and mycelial growth. Expression of one of the PKS genes was not detected under any of 18 conditions tested. This is the first study to genetically characterize a complete set of PKS genes from a single organism.
iNOS as a Driver of Inflammation and Apoptosis in Mouse Skeletal Muscle after Burn Injury: Possible Involvement of Sirt1 S-Nitrosylation-Mediated Acetylation of p65 NF-κB and p53

Inflammation and apoptosis develop in skeletal muscle after major trauma, including burn injury, and play a pivotal role in insulin resistance and muscle wasting. We and others have shown that inducible nitric oxide synthase (iNOS), a major mediator of inflammation, plays an important role in stress (e.g., burn)-induced insulin resistance. However, it remains to be determined how iNOS induces insulin resistance. Moreover, the interrelation between inflammatory response and apoptosis is poorly understood, although they often develop simultaneously. Nuclear factor (NF)-κB and p53 are key regulators of inflammation and apoptosis, respectively. Sirt1 inhibits p65 NF-κB and p53 by deacetylating these transcription factors. Recently, we have shown that iNOS induces S-nitrosylation of Sirt1, which inactivates Sirt1 and thereby increases acetylation and activity of p65 NF-κB and p53 in various cell types, including skeletal muscle cells. Here, we show that iNOS enhances burn-induced inflammatory response and apoptotic change in mouse skeletal muscle along with S-nitrosylation of Sirt1. Burn injury induced robust expression of iNOS in skeletal muscle and gene disruption of iNOS significantly inhibited burn-induced increases in inflammatory gene expression and apoptotic change. In parallel, burn increased Sirt1 S-nitrosylation and acetylation and DNA-binding capacity of p65 NF-κB and p53, all of which were reversed or ameliorated by iNOS deficiency. These results indicate that iNOS functions not only as a downstream effector but also as an upstream enhancer of burn-induced inflammatory response, at least in part, by Sirt1 S-nitrosylation-dependent activation (acetylation) of p65 NF-κB. Our data suggest that Sirt1 S-nitrosylation may play a role in iNOS-mediated enhanced inflammatory response and apoptotic change, which, in turn, contribute to muscle wasting and supposedly to insulin resistance after burn injury.
Antagonistic Action of Lipid Components of Membranes from Candida albicans and Various Other Lipids on Two Imidazole Antimycotics, Clotrimazole and Miconazole

The growth-inhibitory activity of two imidazole antimycotics, clotrimazole and miconazole, against Candida albicans was significantly reversed when lipid extracts from protoplast membranes of the same organism were added to the assay medium together with the drugs. Of four major classes of lipids further separated from them, viz., phospholipids, triglycerides, sterol esters, and free sterols, the former two were capable of counteracting both drugs, whereas the latter two were not. However, even with phospholipids or triglycerides, no antagonism was noted when they were saturated by catalytic hydrogenation before use. The antagonistic effect of varying classes of commercial lipids, including phospholipids, acylglycerides, sterols, and fatty acids, was also studied by means of the agar diffusion technique. Significant antagonism to both drugs was observed with: (i) phospholipids with an unsaturated acyl group; (ii) acylglycerides, the ester portion of which consists of unsaturated fatty acid; (iii) ultraviolet-activated sterols; and (iv) unsaturated fatty acids of cis-configuration. By contrast, none of the saturated phospholipids and acylglycerides nor sterols was effective as an antagonist. With the exception only of lauric acid, all of a series of saturated fatty acids and unsaturated trans-fatty acids ranging from C8 to C18 in chain length were either minimally effective or completely ineffective. Essentially, there was no qualitative difference between clotrimazole and miconazole in the response to these various lipids.
Clustering Using Feature Domain Similarity to Discover Word Senses for Adjectives

This paper presents a new clustering algorithm called DSCBC which is designed to automatically discover word senses for polysemous words. DSCBC is an extension of CBC clustering (P. Pantel and D. Lin, 2002), and incorporates feature domain similarity: the similarity between the features themselves, obtained a priori from sources external to the dataset used at hand. When polysemous words are clustered, words that have similar sense patterns are often grouped together, producing polysemous clusters: a cluster in which features in several different domains are mixed in. By incorporating the feature domain similarity in clustering, DSCBC produces monosemous clusters, thereby discovering individual senses of polysemous words. In this work, we apply the algorithm to English adjectives, and compare the discovered senses against WordNet. The results show significant improvements by our algorithm over other clustering algorithms including CBC.