Miracle-dz/UniFAR-FTUs huggingface dataset:
Simple Estimation of Förster Resonance Energy Transfer (FRET) Orientation Factor Distribution in Membranes

Because of its acute sensitivity to distance in the nanometer scale, Förster resonance energy transfer (FRET) has found a large variety of applications in many fields of chemistry, physics, and biology. One important issue regarding the correct usage of FRET is its dependence on the donor-acceptor relative orientation, expressed as the orientation factor κ2. Different donor/acceptor conformations can lead to κ2 values in the 0 ≤ κ2 ≤ 4 range. Because the characteristic distance for FRET, R0, is proportional to (κ2)1/6, uncertainties in the orientation factor are reflected in the quality of information that can be retrieved from a FRET experiment. In most cases, the average value of κ2 corresponding to the dynamic isotropic limit ( = 2/3) is used for computation of R0 and hence donor-acceptor distances and acceptor concentrations. However, this can lead to significant error in unfavorable cases. This issue is more critical in membrane systems, because of their intrinsically anisotropic nature and their reduced fluidity in comparison to most common solvents. Here, a simple numerical simulation method for estimation of the probability density function of κ2 for membrane-embedded donor and acceptor fluorophores in the dynamic regime is presented. In the simplest form, the proposed procedure uses as input the most probable orientations of the donor and acceptor transition dipoles, obtained by experimental (including linear dichroism) or theoretical (such as molecular dynamics simulation) techniques. Optionally, information about the widths of the donor and/or acceptor angular distributions may be incorporated. The methodology is illustrated for special limiting cases and common membrane FRET pairs.
Control of hybrid electric vehicles

Global optimization techniques, such as dynamic programming, serve mainly to evaluate the potential fuel economy of a given powertrain configuration. Unless the future driving conditions can be predicted during real-time operation but the results obtained using this noncausal approach establish a benchmark for evaluating the optimality of realizable control strategies. Real-time controllers must be simple in order to be implementable with limited computation and memory resources. Moreover, manual tuning of control parameters should be avoided. This article has analyzed two approaches, namely, feedback controllers and ECMS. Both of these approaches can lead to system behavior that is close to optimal, with feedback controllers based on dynamic programming. Additional challenges stem from the need to apply optimal energy-management controllers to advanced HEV architectures, such as combined and plug-in HEVs, as well as to optimization problems that include performance indices in addition to fuel economy, such as pollutant emissions, driveability, and thermal comfort
The Contribution of Different Online Communities in Open Innovation Projects

Online communities used as resource enlargement in open innovation processes are a promising concept. Yet, to date few comparative studies on characteristics of different online communities have been done. This paper identifies the cultures of innovation communities and brand communities in the environment of the Web 2.0 and shows how to use and further exploit their potential in different steps of open innovation projects. To analyze these online communities, an exploratory case study design with ten small- and medium-sized enterprises (SMEs) was chosen. All ten enterprises worked with the same innovation intermediary, which implemented an innovation community platform into a social network and possess a brand community in the respective social network. The key findings suggest that the potential of both communities should be brought together and used as a harmonized strategy for open innovation and social media. Based on these findings, a conceptual framework was developed which illustrates how to integrate such online communities into each stage of a new product development process as well as to interconnect them.
Salient Motion Features for Video Quality Assessment

Design of algorithms that are able to estimate video quality as perceived by human observers is of interest for a number of applications. Depending on the video content, the artifacts introduced by the coding process can be more or less pronounced and diversely affect the quality of videos, as estimated by humans. While it is well understood that motion affects both human attention and coding quality, this relationship has only recently started gaining attention among the research community, when video quality assessment (VQA) is concerned. In this paper, the effect of calculating several objective measure features, related to video coding artifacts, separately for salient motion and other regions of the frames of the sequence is examined. In addition, we propose a new scheme for quality assessment of coded video streams, which takes into account salient motion. Standardized procedure has been used to calculate the Mean Opinion Score (MOS), based on experiments conducted with a group of non-expert observers viewing standard definition (SD) sequences. MOS measurements were taken for nine different SD sequences, coded using MPEG-2 at five different bit-rates. Eighteen different published approaches related to measuring the amount of coding artifacts objectively on a single-frame basis were implemented. Additional features describing the intensity of salient motion in the frames, as well as the intensity of coding artifacts in the salient motion regions were proposed. Automatic feature selection was performed to determine the subset of features most correlated to video quality. The results show that salient-motion-related features enhance prediction and indicate that the presence of blocking effect artifacts and blurring in the salient regions and variance and intensity of temporal changes in non-salient regions influence the perceived video quality.
New methods for fall risk prediction

Purpose of reviewAccidental falls are the leading cause of injury-related death and hospitalization in old age, with over one-third of the older adults experiencing at least one fall or more each year. Because of limited healthcare resources, regular objective fall risk assessments are not possible in the community on a large scale. New methods for fall prediction are necessary to identify and monitor those older people at high risk of falling who would benefit from participating in falls prevention programmes. Recent findingsTechnological advances have enabled less expensive ways to quantify physical fall risk in clinical practice and in the homes of older people. Recently, several studies have demonstrated that sensor-based fall risk assessments of postural sway, functional mobility, stepping and walking can discriminate between fallers and nonfallers. SummaryRecent research has used low-cost, portable and objective measuring instruments to assess fall risk in older people. Future use of these technologies holds promise for assessing fall risk accurately in an unobtrusive manner in clinical and daily life settings.
The Allocation of Control Rights in Pharmaceutical Alliances

This paper uses alliances to test theories of the firm within the context of the biopharmaceutical industry. I find that the allocation of control rights between pharmaceutical and biotechnology firms is sensitive to the bargaining position of both parties. In addition, biotechnology firms entering their first alliance tend, on average, to relinquish more rights. I also explore if and when alliances begin to impact pharmaceutical firm shareholder value. Overall, the market tends to favor earlier stage alliances which are consistent with an underlying healthy pharmaceutical research pipeline.
Data-driven Calibration of Penalties for Least-Squares Regression

Penalization procedures often suffer from their dependence on multiplying factors, whose optimal values are either unknown or hard to estimate from data. We propose a completely data-driven calibration algorithm for these parameters in the least-squares regression framework, without assuming a particular shape for the penalty. Our algorithm relies on the concept of minimal penalty, recently introduced by Birge and Massart (2007) in the context of penalized least squares for Gaussian homoscedastic regression. On the positive side, the minimal penalty can be evaluated from the data themselves, leading to a data-driven estimation of an optimal penalty which can be used in practice; on the negative side, their approach heavily relies on the homoscedastic Gaussian nature of their stochastic framework. The purpose of this paper is twofold: stating a more general heuristics for designing a data-driven penalty (the slope heuristics) and proving that it works for penalized least-squares regression with a random design, even for heteroscedastic non-Gaussian data. For technical reasons, some exact mathematical results will be proved only for regressogram bin-width selection. This is at least a first step towards further results, since the approach and the method that we use are indeed general.
Stapedial reflex in amyotrophic lateral sclerosis.

OBJECTIVE--To examine mechanisms controlling the stapedial reflex in patients with amyotrophic sclerosis (ALS). METHODS--The stapedial reflex was examined using impedance audiometry in 38 patients with sporadic ALS and in 25 age matched controls. RESULTS--All patients showed normal reflex decay test results. There were no significant differences between patients with ALS and control subjects in reflex threshold, latency, amplitude, or contraction time (C50). Although each reflex variable in the patients with classic or progressive muscular atrophy types of ALS showed no significant difference from that in control subjects, the patients with bulbar type ALS showed significantly longer latency, C50, and retraction time (D50), and significantly lower amplitude than control subjects. Three types of abnormal reflex waveforms (polyphasic, abnormally delayed retraction, and abnormally early retraction) were noted in six patients. CONCLUSION--The subclinical involvement of the stapedius motor neurons or of the supranuclear stapedius motor system might be responsible for the abnormalities of the stapedial reflex in ALS.
Perceived Academic Control and Academic Emotions Predict Undergraduate University Student Success: Examining Effects on Dropout Intention and Achievement

The present study addressed concerns over the high risk of university students' academic failure. It examined how perceived academic control and academic emotions predict undergraduate students' academic success, conceptualized as both low dropout intention and high achievement (indicated by GPA). A cross-sectional survey was administered to 883 undergraduate students across all disciplines of a German STEM orientated university. The study additionally compared freshman students (N = 597) vs. second-year students (N = 286). Using structural equation modeling, for the overall sample of undergraduate students we found that perceived academic control positively predicted enjoyment and achievement, as well as negatively predicted boredom and anxiety. The prediction of dropout intention by perceived academic control was fully mediated via anxiety. When taking perceived academic control into account, we found no specific impact of enjoyment or boredom on the intention to dropout and no specific impact of all three academic emotions on achievement. The multi-group analysis showed, however, that perceived academic control, enjoyment, and boredom among second-year students had a direct relationship with dropout intention. A major contribution of the present study was demonstrating the important roles of perceived academic control and anxiety in undergraduate students' academic success. Concerning corresponding institutional support and future research, the results suggested distinguishing incoming from advanced undergraduate students.
Knowledge audit data gathering and analysis

It has been discussed by researchers and practitioners that Knowledge Audit (KA) is an important tool for monitoring the effectiveness of Knowledge Management (KM) implementation. The KA aims at investigating the company status at a given moment regarding the knowledge availability and needs, its flow and usage in processes, by employees, etc. The concept of business patterns for Knowledge Audit was presented at a writers workshop of EuroPLoP 2009, where the patterns KNOWLEDGE AUDIT PLAN, KNOWLEDGE AUDIT TEAM, KNOWLEDGE AUDIT METHODOLOGY, KNOWLEDGE AUDIT QUESTIONNAIRE and KNOWLEDGE AUDIT REPORT were described. This paper continues the previous work and focuses on the patterns KNOWLEDGE AUDIT DATA GATHERING, KNOWLEDGE AUDIT ANALYSES OF RESULTS. Their value is supporting the decision-making process for ensuring greater use of knowledge strengths and the competitive advantages of the organization. In fact, a wider understanding of organizational interests, the global situation and processes could facilitate all employees to contribute better to the competitive position of the organization and the efficient management of its knowledge. In order not to reinvent the wheel, business patterns for Knowledge Audit could be applied in organizations.
Physiological demands of performance in classical ballet and their relationships with injury and aesthetic components.

Abstract At performance level, classical ballet is a form of high-intensity, intermittent exercise, requiring a strong aerobic foundation. Existing training methods have remained largely unchanged over the past century, resulting in poorly conditioned dancers who are prone to injury. The purpose of the thesis was to examine, through several inter-related studies, the demands of training and performance at professional level, and whether fitness levels of classical ballet dancers affect both aesthetic components of performance, and injury. All participants were either in the final year of elite vocational training or were professional dancers. Initial, observational, investigations indicated that both rehearsal and performance posed a variety of demands on different ranks of dancer within a company’s structure, and depicted daily workloads which supported previous complaints of fatigue. Before examination of fitness or performance could begin, novel tools to assess both aerobic fitness, and performance proficiency in ballet dancers were designed and tested for reliability and validity. Both tests met with test-retest reliability standards, with 95% limits of agreement of ±6.2 ml
Survival and reproduction of Onthophagus landolti (Coleoptera: Scarabaeidae) exposed to ivermectin residues in cattle dung

Abstract Two bioassays were conducted in parallel to assess the effects of cattle treated with either 1% ivermectin (IVM) or 3.15% IVM (dosed at 0.2 and 0.63 mg kg−1, respectively) on reproduction and survival of Onthophagus landolti Harold. Adult beetles were exposed 10 days to faeces of treated cattle starting at: one day before treatment (controls), 3, 6, 14, 28 and 35 days post-treatment. Adult survival of O. landolti was not affected by either of the two treatments. Faecal residues of 1% IVM almost completely suppressed fecundity of beetles at 3, 6 and 14 days post-treatment (dPT), and reduced fecundity of O. landolti at 28 dPT ( 38.3%), relative to controls. Meanwhile, IVM residues after treatment with 3.15% IVM almost completely suppressed fecundity of beetles at 3, 6, 14 and 28 dPT, and reduced fecundity of O. landolti at 35 dPT (80.9%), relative to controls. Larval survival was significantly reduced only at 3 dPT with 1% IVM. Meanwhile, treatment with 3.15% IVM significantly reduced larval survival at 6, 14 and 28 dPT. Larval mortality was recorded only in L-I and L-II instars. Moreover, in both bioassays, most of the L-I and L-II specimens that survived showed signs of toxicity. In conclusion, residual IVM in cattle faeces after treatment with injectable IVM has a detrimental effect on the fecundity of adult O. landolti up to 4 weeks post-treatment and on the subsequent larval survival.
Effect of vaginal misoprostol on pregnancy rate after intrauterine insemination: a randomized controlled trial

Background: Intrauterine insemination (IUI) is one of the most appropriate and cost-effective methods in infertility treatment. Objective: We aimed to investigate effect of vaginal misoprostol on pregnancy rate after IUI. Materials and Methods: Two hundred and ten infertile women who were referred to Infertility Clinic of Alzahra Hospital by an indication of IUI during 2012-2013 were randomly assigned to receive 200 µg vaginal misoprostol (n=105) or vaginal placebo (n=105) after IUI. For detecting pregnancy, past 2 weeks, beta human chorionic gonadotropin evaluation was made and if positive, transvaginal sonography was done for evaluation of pregnancy 2-3 weeks later and clinical pregnancy was recorded. Results: Pregnancy had been noted in 24 patients in misoprotol (22.9%) and 27 patients in placebo (25.7%) groups that this difference was not significant (p=0.748). In misoprostol group, 3 case of nausea and vomiting (2.9%) had been observed. Conclusion: According to the results, administering 200 µg vaginal misoprostol after IUI doesn’t have significant effect on the success rate of IUI.
End-joining long nucleic acid polymers

Many experiments involving nucleic acids require the hybridization and ligation of multiple DNA or RNA molecules to form a compound molecule. When one of the constituents is single stranded, however, the efficiency of ligation can be very low and requires significant individually tailored optimization. Also, when the molecules involved are very long (>10 kb), the reaction efficiency typically reduces dramatically. Here, we present a simple procedure to efficiently and specifically end-join two different nucleic acids using the well-known biotin–streptavidin linkage. We introduce a two-step approach, in which we initially bind only one molecule to streptavidin (STV). The second molecule is added only after complete removal of the unbound STV. This primarily forms heterodimers and nearly completely suppresses formation of unwanted homodimers. We demonstrate that the joining efficiency is 50 ± 25% and is insensitive to molecule length (up to at least 20 kb). Furthermore, our method eliminates the requirement for specific complementary overhangs and can therefore be applied to both DNA and RNA. Demonstrated examples of the method include the efficient end-joining of DNA to single-stranded and double-stranded RNA, and the joining of two double-stranded RNA molecules. End-joining of long nucleic acids using this procedure may find applications in bionanotechnology and in single-molecule experiments.
CD79: a review.

CD79 is composed of CD79a and CD79b components expressed almost exclusively on B cells and B-cell neoplasms. CD79a and CD79b expression precedes immunoglobulin (Ig) heavy-chain gene rearrangement and CD20 expression during B-cell ontogeny and disappears later than CD20 in the late (plasma cell) stage of B-cell differentiation. Therefore, antibodies to CD79a and CD79b are useful in the differential diagnosis of B-cell neoplasms from T-cell neoplasms or myeloid neoplasms, or L and H lymphocyte predominance Hodgkin's lymphoma from classic Hodgkin's lymphoma. In addition, CD79a and CD79b antibodies are useful markers in the diagnosis of precursor B-acute lymphoblastic leukemia (pre-B-ALL) because many of these tumors are negative for other B-cell markers, such as CD20 and CD45RA. Furthermore, for B-cell neoplasms, wherein CD20 expression is aberrantly lost, such as in diffuse large B-cell lymphoma, or for B-cell neoplasms after CD20-antibody therapy, CD79a may be used as a first-line B-cell marker for the diagnosis. In this review, the authors discuss the molecular biology of CD79 and the frequency and usefulness of CD79 expression in these neoplasms.
A functional genomic perspective on human well-being

To identify molecular mechanisms underlying the prospective health advantages associated with psychological well-being, we analyzed leukocyte basal gene expression profiles in 80 healthy adults who were assessed for hedonic and eudaimonic well-being, as well as potentially confounded negative psychological and behavioral factors. Hedonic and eudaimonic well-being showed similar affective correlates but highly divergent transcriptome profiles. Peripheral blood mononuclear cells from people with high levels of hedonic well-being showed up-regulated expression of a stress-related conserved transcriptional response to adversity (CTRA) involving increased expression of proinflammatory genes and decreased expression of genes involved in antibody synthesis and type I IFN response. In contrast, high levels of eudaimonic well-being were associated with CTRA down-regulation. Promoter-based bioinformatics implicated distinct patterns of transcription factor activity in structuring the observed differences in gene expression associated with eudaimonic well-being (reduced NF-κB and AP-1 signaling and increased IRF and STAT signaling). Transcript origin analysis identified monocytes, plasmacytoid dendritic cells, and B lymphocytes as primary cellular mediators of these dynamics. The finding that hedonic and eudaimonic well-being engage distinct gene regulatory programs despite their similar effects on total well-being and depressive symptoms implies that the human genome may be more sensitive to qualitative variations in well-being than are our conscious affective experiences.
Therapeutic Options in Idiopathic Burning Mouth Syndrome: Literature Review

Abstract Introduction Burning mouth syndrome (BMS) is characterized by a burning sensation in the tongue, palate, lips, or gums of no well-defined etiology. The diagnosis and treatment for primary BMS are controversial. No specific laboratory tests or diagnostic criteria are well established, and the diagnosis is made by excluding all other possible disorders. Objective To review the literature on the main treatment options in idiopathic BMS and compare the best results of the main studies in 15 years. Data Synthesis We conducted a literature review on PubMed/MEDLINE, SciELO, and Cochrane-BIREME of work in the past 15 years, and only selected studies comparing different therapeutic options in idiopathic BMS, with preference for randomized and double-blind controlled studies. Final Comments Topical clonazepam showed good short-term results for the relief of pain, although this was not presented as a definitive cure. Similarly, α-lipoic acid showed good results, but there are few randomized controlled studies that showed the long-term results and complete remission of symptoms. On the other hand, cognitive therapy is reported as a good and lasting therapeutic option with the advantage of not having side effects, and it can be combined with pharmacologic therapy.