Miracle-dz/UniFAR-FTUs huggingface dataset:
Contrasting photosynthesis and photoinhibition in tetraploid and its autodiploid honeysuckle (Lonicera japonica Thunb.) under salt stress

Honeysuckle (Lonicera japonica Thunb.) is a popular landscape plant. This study was to explore leaf photosynthetic characterization with emphasis on the coordination between photosystem II (PSII) and photosystem I (PSI) in tetraploid and its autodiploid honeysuckle (TH and DH) upon salt stress (300 mM NaCl). Leaf photosynthetic rate and carboxylation efficiency in DH and TH were significantly decreased under salt stress, and the decrease was greater in DH. PSII photoinhibition was induced in DH under salt stress, as the maximum quantum yield of PSII (Fv/Fm) was significantly decreased. PSII photoinhibition declined electron flow to PSI, but did not prevent PSI photoinhibition, as the maximal photochemical capacity of PSI (MR/MR0) was significantly decreased by salt stress. According to the significant decrease in PSI oxidation amplitude in the first 1 s red illumination, PSI photoinhibition was more severe than PSII photoinhibition. As a result, PSII and PSI coordination was destroyed. Comparatively, salt-induced photoinhibition did not occur in TH, as no significant change was observed in Fv/Fm and MR/MR0. Consequently, PSII and PSI coordination was not significantly affected by salt stress. In conclusion, TH maintained normal coordination between PSII and PSI by preventing photoinhibition and exhibited higher leaf photosynthetic activity than DH under salt stress. Compared with DH, lower leaf ionic toxicity due to greater root Na+ extrusion and restriction of Na+ transport to leaf might be responsible for maintaining higher leaf photosynthetic capacity in TH under salt stress.
Improve Chinese Semantic Dependency Parsing via Syntactic Dependency Parsing

We address the problem of Chinese semantic dependency parsing. Dependency parsing is traditionally oriented to syntax analysis, which we denote by syntactic dependency parsing to distinguish it from semantic dependency parsing. In this paper, firstly we compare Chinese semantic dependency parsing and syntactic dependency parsing systematically, showing that syntactic dependency parsing can potentially improve the performance of semantic dependency parsing. Thus then we suggest an approach based on quasi-synchronous grammar to incorporate the auto-parsed syntactic dependency tree into semantic dependency parsing. We conduct experiments on the Chinese semantic dependency parsing corpus of SemEval-2012. Finally we achieve 65.25% LAS on test corpus, gaining increases of 2.45% compared to the top result of 62.80% in SemEval-2012.
Nonalcoholic fatty liver disease.

OBJECTIVE The inflammatory subtype of nonalcoholic fatty liver disease, nonalcoholic steatohepatitis, is becoming one of the most important causes of chronic liver disease. In this article, we discuss the epidemiology, pathogenesis, and clinical and radiologic diagnosis of the subtypes of nonalcoholic fatty liver disease. CONCLUSION We discuss the current and evolving imaging tests in the evaluation of hepatic fatty content, inflammation, and fibrosis.
Particle Shape Modification in Comminution

The evolution of particle shape during the course of comminution processes has been investigated. Shape is characterized using a variety of quantitative shape descriptors determined from particle profiles obtained by image analysis. Descriptors related to particle elongation, roundness and angularity are emphasized. Distributions of the descriptors have been determined for a range of particle sizes, for different extents of grinding for various equipment types. For a given descriptor, the distributions of measured values generally follow a consistent pattern (often roughly log normal). Typically, the means and standard deviations show progressive changes as grinding time increases. For the most part, prolonged exposure to the grinding environment leads to rounding of the particles.
A Pattern Theory of Self

I argue for a pattern theory of self as a useful way to organize an interdisciplinary approach to discussions of what constitutes a self. According to the pattern theory, a self is constituted by a number of characteristic features or aspects that may include minimal embodied, minimal experiential, affective, intersubjective, psychological/cognitive, narrative, extended, and situated aspects. A pattern theory of self helps to clarify various interpretations of self as compatible or commensurable instead of thinking them in opposition, and it helps to show how various aspects of self may be related across certain dimensions. I also suggest that a pattern theory of self can help to adjudicate (or at least map the differences) between the idea that the self correlates to self-referential processing in the cortical midline structures of the brain and other narrower or wider conceptions of self.
Guidelines for Plaque-Reduction Neutralization Testing of Human Antibodies to Dengue Viruses.

Through the Advisory Committee on Dengue and other Flavivirus Vaccines, the World Health Organization(WHO) has had a long-standing commitment to facilitate and to guide research and development of vaccines for medically important flaviviruses. Recently, the Paediatric Dengue Vaccine Initiative (PDVI) was formed to accelerate the development, testing, and introduction of dengue (DEN)vaccines worldwide, partnering with WHO in this important public health effort. There are now a variety of DEN vaccines in various stages of the developmental pipeline. In an attempt to make interlaboratory information more directly comparable, WHO with the support of PDVI initiated a program to coordinate the procedures used for the plaque-reduction neutralization test (PRNT). ThePRNT is the most common assay used to measure neutralizing antibody. The presence of antibody is believed to be most relevant means of determining protective anti-DEN virus (DENV) immunity. While other neutralizing antibody assays are being considered for use in large-scale vaccine field trials, the PRNT is still considered to be the laboratory standard against which other neutralizing antibody assays should be compared. The need for PRNT coordination has been identified at several consultations between the WHO and PDVI. A more complete version of these guidelines is available on the WHO website: http://www.who. int/immunization/documents/date/en/index.html.
Standards for CHERG reviews of intervention effects on child survival

Background The Lives Saved Tool (LiST) uses estimates of the effects of interventions on cause-specific child mortality as a basis for generating projections of child lives that could be saved by increasing coverage of effective interventions. Estimates of intervention effects are an essential element of LiST, and need to reflect the best available scientific evidence. This article describes the guidelines developed by the Child Health Epidemiology Reference Group (CHERG) that are applied by scientists conducting reviews of intervention effects for use in LiST. Methods The guidelines build on and extend those developed by the Cochrane Collaboration and the Working Group for Grading of Recommendations Assessment, Development and Evaluation (GRADE). They reflect the experience gained by the CHERG intervention review groups in conducting the reviews published in this volume, and will continue to be refined through future reviews. Presentation of the guidelines Expected products and guidelines are described for six steps in the CHERG intervention review process: (i) defining the scope of the review; (ii) conducting the literature search; (iii) extracting information from individual studies; (iv) assessing and summarizing the evidence; (v) translating the evidence into estimates of intervention effects and (vi) presenting the results. Conclusions The CHERG intervention reviews represent an ambitious effort to summarize existing evidence and use it as the basis for supporting sound public health decision making through LiST. These efforts will continue, and a similar process is now under way to assess intervention effects for reducing maternal mortality.
Antibodies against glutamic acid decarboxylase and indices of insulin resistance and insulin secretion in nondiabetic adults: a cross-sectional study

Background Autoimmunity against insulin-producing beta cells from pancreatic islets is a common phenomenon in type 1 diabetes and latent autoimmune diabetes in adults. Some reports have also related beta-cell autoimmunity to insulin resistance (IR) in type 2 diabetes. However, the extent to which autoimmunity against components of beta cells is present and relates to IR and insulin secretion in nondiabetic adults is uncertain. Aim To explore the association between antibodies against glutamic acid decarboxylase (GADA), a major antigen from beta cells, and indices of whole-body IR and beta-cell capacity/insulin secretion in adults who do not have diabetes. Methods We studied 81 adults of both sexes aged 30–70, without known diabetes or any autoimmune disease. Participants underwent an oral glucose tolerance test (OGTT) with determination of plasma glucose and insulin at 0, 30, 60, 90, and 120 minutes. From these results we calculated indices of insulin resistance (homeostasis model assessment of insulin resistance [HOMA-IR] and incremental area under the insulin curve [iAUCins]) and insulin secretion (corrected insulin response at 30 minutes and HOMA beta-cell%). GADAs were measured in fasting plasma using immunoenzymatic methods. Results We found an overall prevalence of GADA positivity of 21.3%, without differences by sex and no correlation with age. GADA titers did not change monotonically across quartiles of any of the IR or insulin secretion indices studies. GADA did not correlate linearly with fasting IR expressed as HOMA-IR (Spearman’s r=−0.18, p=0.10) or postabsorptive IR expressed as iAUCins (r=−0.15, p=0.18), but did show a trend toward a negative correlation with insulin secretory capacity expressed by the HOMA-beta cell% index (r=−0.20, p=0.07). Hemoglobin A1c, body mass index, and waist circumference were not associated with GADA titers. Conclusion GADA positivity is frequent and likely related to impaired beta-cell function among adults without known diabetes.
Association of Premorbid Adjustment with Symptom Profile and Quality of Life in First Episode Psychosis in a Tertiary Hospital in Tehran, Iran

Objective Poor premorbid adjustment has been reported to be a predictor of more severe psychotic symptoms and poor quality of life in such psychotic disorders as schizophrenia. However, most studies were performed on chronic schizophrenic patients, and proposed the likelihood of recall biases and the effect of chronicity. The aim of this study was to investigate these factors in a sample of first episode psychotic patients, as a part of Roozbeh first episode psychosis project (RooF). Method Premorbid adjustment was assessed using Premorbid Adjustment Scale (PAS) in 48 patients with the first psychotic episode who were admitted to Roozbeh Psychiatric Hospital. The severity of symptoms was measured using Positive and Negative Scale (PANSS) in three subgroups of positive, negative and general subscales. Quality of life was measured using WHO QOL , and Global Assessment of Functioning (GAF) was also measured. Results The mean age was 24 years. Poor Premorbid adjustment in late adolescence was significantly associated with more severe symptoms according to PANSS negative symptoms (p=0.019, r=0.44). Furthermore, sociability and peer relationship domains had a positive correlation with PANSS negative subscale scores (r=0.531, p=0.002 and r=0.385, p=0.03, respectively). There were no significant differences between males and females in premorbid adjustment. Furthermore, this study failed to show any differences between affective and non-affective psychosis in premorbid functioning. Conclusion Our study confirms poor premorbid adjustment association with more severe negative symptoms and poor quality of life in a sample of Iranian first episode psychotic patients.
The importance of Ca2+-dependent mechanisms for the initiation of the heartbeat

Mechanisms underlying pacemaker activity in the sinus node remain controversial, with some ascribing a dominant role to timing events in the surface membrane (“membrane clock”) and others to uptake and release of calcium from the sarcoplasmic reticulum (SR) (“calcium clock”). Here we discuss recent evidence on mechanisms underlying pacemaker activity with a particular emphasis on the many roles of calcium. There are particular areas of controversy concerning the contribution of calcium spark-like events and the importance of I(f) to spontaneous diastolic depolarisation, though it will be suggested that neither of these is essential for pacemaking. Sodium-calcium exchange (NCX) is most often considered in the context of mediating membrane depolarisation after spark-like events. We present evidence for a broader role of this electrogenic exchanger which need not always depend upon these spark-like events. Short (milliseconds or seconds) and long (minutes) term influences of calcium are discussed including direct regulation of ion channels and NCX, and control of the activity of calcium-dependent enzymes (including CaMKII, AC1, and AC8). The balance between the many contributory factors to pacemaker activity may well alter with experimental and clinical conditions, and potentially redundant mechanisms are desirable to ensure the regular spontaneous heart rate that is essential for life. This review presents evidence that calcium is central to the normal control of pacemaking across a range of temporal scales and seeks to broaden the accepted description of the “calcium clock” to cover these important influences.
Linkage and association

Methods of both linkage analysis and association analysis may be model‐based or model‐free. The former are useful for initial exploratory analysis, the latter for more detailed multivariate genometric analysis. Linkage leads to an association, but that association may be solely intrafamilial. Allelic association may be due to pleiotropy, linkage disequilibrium, meiotic drive, selection, or population stratification. Using non‐transmitted parental alleles as controls for alleles transmitted to cases, in conjunction with a McNemar‐type test, does not detect association in the absence of linkage. Model‐based analyses should use models that approximate the complexity of the disease being studied in order to be both robust and powerful. Genet. Epidemiol. 15:565–576,1998. © 1998 Wiley‐Liss, Inc.
The Influence of Knowledge Management Capabilities on Organizational Performance: A Study of Private University in Malaysia

In today's rapidly changing environment, knowledge is viewed by organizations as a key strategic and competitive resource. Several case studies, applications, and rich literature support the belief that Knowledge Management Capabilities (KMC) plays a vital role in organizational success. The purpose of this paper is to find the influence of the KMCs’ elements on the organizational performance of a Malaysian private university. The literature review is conducted and based on the literature; the paper incorporates elements of KMC that include knowledge acquisition, knowledge application, technology infrastructure, organizational culture, and organizational structure. Data of the study collected from 39 respondents by using convenience-sampling technique. The finding reveals that the five proposed hypotheses are supported. Organizational structure has the strongest influence on organizational performance. Discussion, practical recommendations, and direction for future work are given
Relationship between the Social Cognition and Object Relations Scale (SCORS) and attachment style in a clinical sample.

This present study examined the relationship between the Social Cognition and Object Relations Scale (SCORS) and two measures of adult attachment: the Relationship Questionnaire (RQ) and the Experiences in Close Relationships Questionnaire-Revised (ECR-R). Forty-five patients (76% female) at a university-based outpatient treatment clinic participated in this study. We hypothesized that higher levels of attachment security would be associated with higher, more adaptive ratings on the SCORS variables. Results indicated that the SCORS Self-Esteem (SE) variable was significantly positively related to the RQ's Secure Attachment ratings and negatively related with the ECR-R's Anxious Attachment scale. Additionally, negative trends were noted between SE and the RQ's Fearful and Preoccupied Attachment scores. The SCORS Emotional Investments in Relationships and Affective Quality of Representations variables were associated with higher Secure scores and lower, more maladaptive Preoccupied scores on the RQ. It was also associated with greater attachment anxiety as measured by the ECR-R. Using both clinician (SCORS) and participant-rated measures (ECR-R and RQ), this study provides further understanding on how object representations and attachment style relate within a clinical sample. Results are discussed in light of prior research examining relationships between object relations and adult attachments, and clinical implications are also reviewed. Copyright © 2010 John Wiley & Sons, Ltd. Key Practitioner Message: • Individuals with higher levels of attachment anxiety may enter therapy with more self-image problems. • Individuals with higher levels of attachment anxiety may enter therapy with more maladaptive expectations about relationships. • Patients who endorse high levels of attachment anxiety (e.g., fearful and preoccupied) may be more likely to present with Axis II complaints. • Examining a patient's attachment style and object relations using different measures of assessment (e.g., explicit and implicit) can help gain a deeper and more comprehensive understanding of a patient.
Pentamidine-Induced Long QT Syndrome and Block of hERG Trafficking

The diamidine pentamidine is used to treat leishmaniasis, trypanosomiasis, and Pneumocystis carinii pneumonia. Treatment may be accompanied by prolongation of the QT interval of the electrocardiogram and torsades de pointes tachycardias. Up to now, it has been thought that therapeutic compounds causing QT prolongation are associated with direct block of the cardiac potassium channel human ether a-go-go-related gene (hERG), which encodes the α subunit of cardiac IKr currents. We show that pentamidine has no acute effects on currents produced by hERG, KvLQT1/mink, Kv4.3, or SCNA5. Cardiac calcium currents and the guinea pig cardiac action potential were also not affected. After overnight exposure, however, pentamidine reduced hERG currents and inhibited trafficking and maturation of hERG with IC50 values of 5 to 8 μM similar to therapeutic concentrations. Surface expression determined in a chemiluminescence assay was reduced on exposure to 10, 30, and 100 μM pentamidine by about 30, 40, and 70%, respectively. These effects were specific for hERG since expression of hKv1.5, KvLQT1/minK, and Kv4.3 was not altered. In isolated guinea pig ventricular myocytes, 10 μM pentamidine prolonged action potential duration APD90 from 374.3 ± 57.1 to 893.9 ± 86.2 ms on overnight incubation. IKr tail current density was reduced from 0.61 ± 0.09 to 0.39 ± 0.04 pA/pF. We conclude that pentamidine prolongs the cardiac action potential by block of hERG trafficking and reduction of the number of functional hERG channels at the cell surface. We propose that pentamidine, like arsenic trioxide, produces QT prolongation and torsades de pointes in patients by inhibition of hERG trafficking.
Contaminant removal performances on domestic sewage using modified anoxic/anaerobic/oxic process and micro-electrolysis

The objective of this study was to enhance removal of chemical oxygen demand (COD), total nitrogen (TN) and total phosphorus (TP) from domestic sewage in a sequencing batch reactor with added new materials. A modified anoxic/anaerobic/oxic (MAAO) process, integrating a micro-electrolysis (ME) bed in an anoxic tank, and complex biological media (CBM) in anoxic, anaerobic and oxic tanks to treat domestic sewage, and their performances were investigated. The MAAO system was operated at controlled hydraulic reTENTion time (HRT) of 8 h and mixed liquor recirculation (MLR) at 75%. The results showed that the MAAO system could effectively remove COD, TN and TP with average rates of 93%, 80% and 94%, respectively, in March, and 94%, 76% and 91%, respectively, in August. In this system, TP was primarily removed from the anoxic tank regardless of the operational conditions; removal contribution ratios to TP of the anoxic tank reached 56% both in March and August, indicating that the ME bed can effectively enhance phosphorus removal. TN was primarily removed from the anoxic and anaerobic tanks; removal contribution ratios to TN of anoxic and anaerobic tanks reached 36–38% and 37–38%, respectively. The oxic tank had the highest share of COD removal (56% both in March and August) in the removal of phosphorus. The outflow concentrations of COD, TN and TP were 3–46, 7–14 and 0.3–0.5 mg/L, respectively, in March, and 26–49, 9–15 and 0.04–0.1 mg/L, respectively, in August. COD and TN removal performances indicated that the innovative materials of the ME bed and CBM can effectively enhance COD and TN removal.
Development of multiplex polymerase chain reaction assay for rapid detection of Staphylococcus aureus and selected antibiotic resistance genes in bovine mastitic milk samples

To improve the diagnosis of Staphylococcus aureus mastitis and its potential antibiotic resistance in dairy cattle, a multiplex polymerase chain reaction (PCR) assay was developed for simultaneous species identification and detection of penicillin, erythromycin, and tetracycline resistance genes. The assay was first verified using 85 clinical isolates of S. aureus, and its effectiveness was evaluated by testing 99 mastitic milk samples. The multiplex PCR assay had high detection sensitivity in samples from both groups (100% agreement with single-gene PCR), with detection limits of 100–103 colony-forming units (cfu)/ml. The detection limits of the current assay for nuc, blaZ, erm B, erm C, tet K, and tet M genes were 101, 101, 102, 100, 102, and 103 cfu/ml, respectively. There was a good correlation between genotypic analysis by PCR and phenotypic determination using S. aureus species identification and susceptibility testing methods. High diagnostic sensitivities and specificities were shown for the target resistance genes (blaZ gene, 97.2% and 92.9%; ERM resistance genes, 100% and 95.6%; TET resistance genes, 100% and 96%). Results suggested that the current PCR assay could be used as an alternative diagnostic method in the routine diagnosis for rapid, sensitive, and specific detection of S. aureus and its associated antibiotic resistance genes in mastitic milk samples.