Miracle-dz/UniFAR-FTUs huggingface dataset:
Pharmacodynamic and pharmacokinetic considerations in the treatment of critically Ill patients infected with carbapenem-resistant Enterobacteriaceae

ABSTRACT Carbapenem-Resistant Enterobacteriaceae (CRE) are an emerging healthcare crisis. Infections due to CRE are associated with high morbidity and mortality, especially in critically ill patients. Due to the multi-drug resistant nature of these infections only limited treatment options are available. Antimicrobials that have been described for the treatment of CRE infections include carbapenems, polymyxins, fosfomycin, tigecycline, aminoglycosides, and ceftazidime-avibactam. Given the limited treatment options it is imperative the pharmacokinetic and pharmacodynamics (PK-PD) characteristics of these agents are considered to optimize treatment regimens. This review will focus on the PK-PD challenges of the current treatment options for CRE infections.
Use of rbcL and trnL-F as a Two-Locus DNA Barcode for Identification of NW-European Ferns: An Ecological Perspective

Although consensus has now been reached on a general two-locus DNA barcode for land plants, the selected combination of markers (rbcL + matK) is not applicable for ferns at the moment. Yet especially for ferns, DNA barcoding is potentially of great value since fern gametophytes—while playing an essential role in fern colonization and reproduction—generally lack the morphological complexity for morphology-based identification and have therefore been underappreciated in ecological studies. We evaluated the potential of a combination of rbcL with a noncoding plastid marker, trnL-F, to obtain DNA-identifications for fern species. A regional approach was adopted, by creating a reference database of trusted rbcL and trnL-F sequences for the wild-occurring homosporous ferns of NW-Europe. A combination of parsimony analyses and distance-based analyses was performed to evaluate the discriminatory power of the two-region barcode. DNA was successfully extracted from 86 tiny fern gametophytes and was used as a test case for the performance of DNA-based identification. Primer universality proved high for both markers. Based on the combined rbcL + trnL-F dataset, all genera as well as all species with non-equal chloroplast genomes formed their own well supported monophyletic clade, indicating a high discriminatory power. Interspecific distances were larger than intraspecific distances for all tested taxa. Identification tests on gametophytes showed a comparable result. All test samples could be identified to genus level, species identification was well possible unless they belonged to a pair of Dryopteris species with completely identical chloroplast genomes. Our results suggest a high potential of the combined use of rbcL and trnL-F as a two-locus cpDNA barcode for identification of fern species. A regional approach may be preferred for ecological tests. We here offer such a ready-to-use barcoding approach for ferns, which opens the way for answering a whole range of questions previously unaddressed in fern gametophyte ecology.
Shape based image retrieval system for MRI spine

Image retrieval system (IRS) is a searching system that uses certain characteristics or context in an image. In the medical field, the IRS has been used to provide the needed correct images to the physicians while the diagnosis and treatment process is being conducted. In this paper, the research focus is on content-based IRS. In content-based IRS, two phases are discussed: feature extraction and selection, and the retrieval phase. The feature extraction technique is based on global shape descriptor (GSD), Hu moment invariant (Hu) and Fourier descriptor (FD) while the feature selection technique uses analysis of variance (ANOVA). The retrieval phase is implemented with the new feature vector formed and the performance is evaluated using four distance metrics namely Euclidean (E), Manhattan (M), Normalized Euclidean (NE) and Normalized Manhattan (NM). The experiment for CBIRS is performed on 100 MRI human spine images for each thoracic, lumbar and sacrum. The retrieval performances gave the best result for NM in retrieving the lumbar bones which the precision is up to 91.1%.
Characteristics of the Mesophotic Megabenthic Assemblages of the Vercelli Seamount (North Tyrrhenian Sea)

The biodiversity of the megabenthic assemblages of the mesophotic zone of a Tyrrhenian seamount (Vercelli Seamount) is described using Remotely Operated Vehicle (ROV) video imaging from 100 m depth to the top of the mount around 61 m depth. This pinnacle hosts a rich coralligenous community characterized by three different assemblages: (i) the top shows a dense covering of the kelp Laminaria rodriguezii; (ii) the southern side biocoenosis is mainly dominated by the octocorals Paramuricea clavata and Eunicella cavolinii; while (iii) the northern side of the seamount assemblage is colonized by active filter-feeding organisms such as sponges (sometimes covering 100% of the surface) with numerous colonies of the ascidian Diazona violacea, and the polychaete Sabella pavonina. This study highlights, also for a Mediterranean seamount, the potential role of an isolated rocky peak penetrating the euphotic zone, to work as an aggregating structure, hosting abundant benthic communities dominated by suspension feeders, whose distribution may vary in accordance to the geomorphology of the area and the different local hydrodynamic conditions.
Alien Marine Fishes Deplete Algal Biomass in the Eastern Mediterranean

One of the most degraded states of the Mediterranean rocky infralittoral ecosystem is a barren composed solely of bare rock and patches of crustose coralline algae. Barrens are typically created by the grazing action of large sea urchin populations. In 2008 we observed extensive areas almost devoid of erect algae, where sea urchins were rare, on the Mediterranean coast of Turkey. To determine the origin of those urchin-less ‘barrens’, we conducted a fish exclusion experiment. We found that, in the absence of fish grazing, a well-developed algal assemblage grew within three months. Underwater fish censuses and observations suggest that two alien herbivorous fish from the Red Sea (Siganus luridus and S. rivulatus) are responsible for the creation and maintenance of these benthic communities with extremely low biomass. The shift from well-developed native algal assemblages to ‘barrens’ implies a dramatic decline in biogenic habitat complexity, biodiversity and biomass. A targeted Siganus fishery could help restore the macroalgal beds of the rocky infralittoral on the Turkish coast.
A Galerkin Least Squares Approach for Photoacoustic Tomography

The development of fast and accurate image reconstruction algorithms is a central aspect of computed tomography. In this paper we address this issue for photoacoustic computed tomography in circular geometry. We investigate the Galerkin least squares method for that purpose. For approximating the function to be recovered we use subspaces of translation invariant spaces generated by a single Funktion. This includes many systems that have previously been employed in PAT such as generalized Kaiser-Bessel basis functions or the natural pixel basis. By exploiting an isometry property of the forward problem we are able to efficiently set up the Galerkin equation for a wide class of generating functions and Devise efficient algorithms for its solution. We establish a convergence analysis and present numerical simulations that demonstrate the efficiency and accuracy of the derived algorithm.
The Effect of the Amniotic Fluid Index on the Accuracy of Ultrasonographic-Estimated Fetal Weight

Background Fetal weight estimation is one of the most important aspects of antenatal care. The effects of amniotic fluid volume on the accuracy of estimated fetal weight (EFW) depend on the amount of fluid, in particular whether it is polyhydramnios or oligohydramnios. Previous studies have reported conflicting results of the effects of amniotic fluid volume on EFW accuracy. Aim The aim of the study was to evaluate the effects of isolated oligohydramnios cases and polyhydramnios on the accuracy of EFW. Materials and Methods A retrospective study was conducted at a tertiary center. The study groups consisted of 1069 term isolated oligohydramnios cases, 182 term isolated polyhydramnios cases, and 392 term-matched cases with a normal volume of amniotic fluid. Estimated fetal weight error was determined and expressed in terms of systematic error, calculated from mean percentage error and random error. Results The systematic error did not differ significantly between polyhydramnios and oligohydramnios cases (−3.60 [8.94%] vs −2.73 [9.7%]). The random error was 8.94% in polyhydramnios cases and 9.7% in oligohydramnios cases. The overestimation rate was 63.6% in polyhydramnios cases and 66.3% in oligohydramnios cases. Conclusions There were no significant differences in the accuracy of EFW between oligohydramnios and polyhydramnios. However, there was a tendency for overestimation in both types of cases.
Faces in Places: Humans and Machines Make Similar Face Detection Errors

The human visual system seems to be particularly efficient at detecting faces. This efficiency sometimes comes at the cost of wrongfully seeing faces in arbitrary patterns, including famous examples such as a rock configuration on Mars or a toast's roast patterns. In machine vision, face detection has made considerable progress and has become a standard feature of many digital cameras. The arguably most wide-spread algorithm for such applications (“Viola-Jones” algorithm) achieves high detection rates at high computational efficiency. To what extent do the patterns that the algorithm mistakenly classifies as faces also fool humans? We selected three kinds of stimuli from real-life, first-person perspective movies based on the algorithm's output: correct detections (“real faces”), false positives (“illusory faces”) and correctly rejected locations (“non faces”). Observers were shown pairs of these for 20 ms and had to direct their gaze to the location of the face. We found that illusory faces were mistaken for faces more frequently than non faces. In addition, rotation of the real face yielded more errors, while rotation of the illusory face yielded fewer errors. Using colored stimuli increases overall performance, but does not change the pattern of results. When replacing the eye movement by a manual response, however, the preference for illusory faces over non faces disappeared. Taken together, our data show that humans make similar face-detection errors as the Viola-Jones algorithm, when directing their gaze to briefly presented stimuli. In particular, the relative spatial arrangement of oriented filters seems of relevance. This suggests that efficient face detection in humans is likely to be pre-attentive and based on rather simple features as those encoded in the early visual system.
Calculation procedures to estimate fine root production rates in forests using two-dimensional fine root data obtained by the net sheet method

Several recent studies have used the net sheet method to estimate fine root production rates in forest ecosystems, wherein net sheets are inserted into the soil and fine roots growing through them are observed. Although this method has advantages in terms of its easy handling and low cost, there are uncertainties in the estimates per unit soil volume or unit stand area, because the net sheet is a two-dimensional material. Therefore, this study aimed to establish calculation procedures for estimating fine root production rates from two-dimensional fine root data on net sheets. This study was conducted in a hinoki cypress (Chamaecyparis obtusa (Sieb. & Zucc.) Endl. ) stand in western Japan. We estimated fine root production rates in length and volume from the number (RN) and cross-sectional area (RCSA) densities, respectively, for fine roots crossing the net sheets, which were then converted to dry mass values. For these calculations, we used empirical regression equations or theoretical equations between the RN or RCSA densities on the vertical walls of soil pits and fine root densities in length or volume, respectively, in the soil, wherein the theoretical equations assumed random orientation of the growing fine roots. The estimates of mean fine root (diameter <1 mm) production rates were ∼80-100 g m-2 year-1 using the empirically obtained regression equations, whereas those from the theoretical equations were ∼40-50 g m-2 year-1. The difference in the estimates was attributed to larger slope values of the empirical regression equations than those of the theoretical equations, suggesting that fine root orientation was not random in our study site. In light of these results, we concluded that fine root production rates were successfully estimated from two-dimensional fine root data on the net sheets using these calculation procedures, with the empirical regression equations reflecting fine root orientation in the study site.
Physical And Electrochemical Characterisation Of Electroless Nickel Coatings On Carbon Steel

Various electrolyte and deposit parameters were investigated to assess the performance of electroless nickel coatings deposited from baths aged in the range 0-6 metal bath turnovers. The properties studied included: measurement of internal stress, analysis of orthophosphite concentration in the plating solution and determination of phosphorus content in the deposit. The effect of bath ageing on the hardness of the deposit in the as-plated condition, and after heat treatment, was also examined. Changes in the deposit mainly appeared in the range of 35 metal turnovers, suggesting that the life expectancy of these electroless nickel plating solutions should not exceed 6 metal bath turnovers. The corrosion potential (E^) was measured and the corrosion current density (i^) of coated samples was determined by extrapolation of polarisation vs. log current density (Tafel) plots in 0.125M P^SOj. at 22°C.
Cost-Effectiveness of HIV Screening in STD Clinics, Emergency Departments, and Inpatient Units: A Model-Based Analysis

Background Identifying and treating persons with human immunodeficiency virus (HIV) infection early in their disease stage is considered an effective means of reducing the impact of the disease. We compared the cost-effectiveness of HIV screening in three settings, sexually transmitted disease (STD) clinics serving men who have sex with men, hospital emergency departments (EDs), settings where patients are likely to be diagnosed early, and inpatient diagnosis based on clinical manifestations. Methods and Findings We developed the Progression and Transmission of HIV/AIDS model, a health state transition model that tracks index patients and their infected partners from HIV infection to death. We used program characteristics for each setting to compare the incremental cost per quality-adjusted life year gained from early versus late diagnosis and treatment. We ran the model for 10,000 index patients for each setting, examining alternative scenarios, excluding and including transmission to partners, and assuming HAART was initiated at a CD4 count of either 350 or 500 cells/µL. Screening in STD clinics and EDs was cost-effective compared with diagnosing inpatients, even when including only the benefits to the index patients. Screening patients in STD clinics, who have less-advanced disease, was cost-effective compared with ED screening when treatment with HAART was initiated at a CD4 count of 500 cells/µL. When the benefits of reduced transmission to partners from early diagnosis were included, screening in settings with less-advanced disease stages was cost-saving compared with screening later in the course of infection. The study was limited by a small number of observations on CD4 count at diagnosis and by including transmission only to first generation partners of the index patients. Conclusions HIV prevention efforts can be advanced by screening in settings where patients present with less-advanced stages of HIV infection and by initiating treatment with HAART earlier in the course of infection.
Esco1 and Esco2 regulate distinct cohesin functions during cell cycle progression

Significance Sister chromatids are tethered together by the cohesin complex from the time they are made until cell division. Acetylation of the Smc3 subunit of cohesin stabilizes its association with chromatin, and is critical for sister chromatid cohesion. In vertebrates, cohesin is acetylated by two related enzymes: Esco1 and Esco2. We show here that Esco1 is responsible for most Smc3 acetylation but has very little effect on sister cohesion. Esco1 is active throughout the cell cycle, while Esco2 modifies cohesin only during S phase, when sister chromatid cohesion is established. We propose that two distinct pathways regulate cohesin in vertebrates: one is dedicated to cohesion between sister chromatids, and one promotes other functions of cohesin, such as maintenance of chromosome structure. Sister chromatids are tethered together by the cohesin complex from the time they are made until their separation at anaphase. The ability of cohesin to tether sister chromatids together depends on acetylation of its Smc3 subunit by members of the Eco1 family of cohesin acetyltransferases. Vertebrates express two orthologs of Eco1, called Esco1 and Esco2, both of which are capable of modifying Smc3, but their relative contributions to sister chromatid cohesion are unknown. We therefore set out to determine the precise contributions of Esco1 and Esco2 to cohesion in vertebrate cells. Here we show that cohesion establishment is critically dependent upon Esco2. Although most Smc3 acetylation is Esco1 dependent, inactivation of the ESCO1 gene has little effect on mitotic cohesion. The unique ability of Esco2 to promote cohesion is mediated by sequences in the N terminus of the protein. We propose that Esco1-dependent modification of Smc3 regulates almost exclusively the noncohesive activities of cohesin, such as DNA repair, transcriptional control, chromosome loop formation, and/or stabilization. Collectively, our data indicate that Esco1 and Esco2 contribute to distinct and separable activities of cohesin in vertebrate cells.
Keeping our heads above water: A systematic review of fatal drowning in South Africa.

BACKGROUND Drowning is defined as the process of experiencing respiratory impairment from submersion/immersion in liquid, and can have one of three outcomes - no morbidity, morbidity or mortality. The World Health Organization African region accounts for approximately 20% of global drowning, with a drowning mortality rate of 13.1 per 100 000 population. The strategic implementation of intervention programmes driven by evidence-based decisions is of prime importance in resource-limited settings such as South Africa (SA). OBJECTIVE To review the available epidemiological data on fatal drowning in SA in order to identify gaps in the current knowledge base and priority intervention areas. METHODS A systematic review of published literature was conducted to review the available epidemiological data describing fatal drowning in SA. In addition, an internet search for grey literature, including technical reports, describing SA fatal drowning epidemiology was conducted. RESULTS A total of 13 published research articles and 27 reports obtained through a grey literature search met the inclusion and exclusion criteria. These 40 articles and reports covered data collection periods between 1995 and 2016, and were largely focused on urban settings. The fatal drowning burden in SA is stable at approximately 3.0 per 100 000 population, but is increasing as a proportion of all non-natural deaths. Drowning mortality rates are high in children aged <15 years, particularly in those aged <5. CONCLUSIONS This review suggests that SA drowning prevention initiatives are currently confined to the early stages of an effective injury prevention strategy. The distribution of mortality across age groups and drowning location differs substantially between urban centres and provinces. There is therefore a need for detailed drowning surveillance to monitor national trends and identify risk factors in all SA communities.
Neural networks supporting social evaluation of bodies based on body shape

ABSTRACT Body shape cues inferences regarding personality and health, but the neural processes underpinning such inferences remain poorly understood. Across two fMRI experiments, we test the extent to which neural networks associated with body perception and theory-of-mind (ToM) support social inferences based on body shape. Participants observed obese, muscular, and slim bodies that cued distinct social inferences as revealed in behavioural pilot experiments. To investigate judgment intentionality, the first fMRI experiment required participants to detect repeat presentations of bodies, whereas in fMRI Experiment 2 participants intentionally formed an impression. Body and ToM networks were localized using independent functional localisers. Experiment 1 revealed no differential network engagement for muscular or obese compared to slim bodies. By contrast, in Experiment 2, compared to slim bodies, forming impressions of muscular bodies engaged the body-network more, whereas the ToM-network was engaged more when forming impressions of obese bodies. These results demonstrate that social judgments based on body shape do not rely on a single neural mechanism, but rather on multiple mechanisms that are separately sensitive to body fat and muscularity. Moreover, dissociable responses are only apparent when intentionally forming an impression. Thus, these experiments show how segregated networks operate to extract socially-relevant information cued by body shape.
FATIGUE LIFE PREDICTIONS UNDER HIGH AND LOW COMBINED CYCLE LOADING

The rotator blade of aero engine is subjected to combined low and high cycle loading in service.Specimens of titanium alloy TC11 are tested under low cycle,high cycle and combined cycle loading respectively.Based on these test results,combined cycle fatigue life is estimated by using linear and non-linear damage cumulative models.Comparison of estimated and experimental data shows that linear damage accumulation model can be used for preliminary estimates of the fatigue life under combined cycle load conditions,but the estimates are somewhat dangerous,and that the results of nonlinear estimation method considering the combined cycle ratio and the stress amplitude ratio is consistent with the experimental values relatively.
Large-Signal Stability Analysis of DC Power System With Shunt Active Damper

This paper proposes a large-signal stabilization method for the dc power system with a constant power load (CPL), which is detrimental to system stability due to its negative incremental resistance (NIR). The proposed method utilizes a shunt active damper at the point of common coupling of the dc bus and controls it as a parallel set of a virtual capacitor, virtual inductor, and resistor. The Takagi-Sugeno fuzzy model is employed with the Lyapunov stability theorem to verify the asymptotic stability of the system and to estimate the region of asymptotic stability. Improvements on the dc-bus voltage stability are evaluated based on dc-bus voltage deviation or dc-bus capacitance reduction. The performance of the proposed shunt active damper is verified by simulation and experimental results.