Miracle-dz/UniFAR-FTUs huggingface dataset:
Population structure of the oldest known macroscopic communities from Mistaken Point, Newfoundland

Abstract The presumed affinities of the Terminal Neoproterozoic Ediacara biota have been much debated. However, even in the absence of concrete evidence for phylogenetic affinity, numerical paleoecological approaches can be effectively used to make inferences about organismal biology, the nature of biotic interactions, and life history. Here, we examine the population structure of three Ediacaran rangeomorph taxa (Fractofusus, Beothukis, and Pectinifrons), and one non-rangeomorph taxon (Thectardis) across five fossil surfaces around the Avalon Peninsula, Newfoundland, through analysis of size-frequency distributions using Bayesian Information Criterion (BIC). Best-supported models resolve communities of all studied Ediacaran taxa at Mistaken Point as single cohorts with wide variance. This result is best explained in terms of a “continuous reproduction” model, whereby Ediacaran organisms reproduce aseasonally, so that multiple size modes are absent from preserved communities. Modern benthic invertebrates (both as a whole and within specific taxonomic groups) in deeper-water settings reproduce both seasonally and aseasonally; distinguishing between biological (i.e., continuous reproductive strategies) and environmental (lack of a seasonal trigger) causes for this pattern is therefore difficult. However, we hypothesize that the observed population structure could reflect the lack of a trigger for reproduction in deepwater settings (i.e., seasonal flux of organic matter), until the explosive appearance of mesozooplankton near the base of the Cambrian.
The Effects of Differentiation on Educational Attainment: The Case of Community Colleges

Abstract: This essay presents two contrasting hypotheses about the effects of community colleges—the view that these institutions “cool out” those who might attend four-year colleges, and the view that they increase schooling for students who would otherwise have no access to higher education—and argues that both may occur simultaneously. To test which one predominates, the author develops a model of educational attainment as a function of both labor market conditions and institutional structure. Using data from fifty states, he concludes that both hypotheses are partially correct and that, in addition, economic conditions strongly influence educational attainment.
Superluminal apparent motions in distant radio sources

We derive the prediction of the standard model of superluminal radio sources for the apparent transverse velocity of a radio source located at redshift z. The apparent velocity of the source is reduced by a factor of 1+z compared to that of a similar nearby source. The cause of this reduction is recession of the distant source due to the expansion of the universe. The apparent velocity of a source can be estimated from its redshift and proper motion using the values of the Hubble constant and the mean densities of different energy components in the universe. We derive an expression for the velocity valid for the currently favored cosmological model: a flat universe with a nonzero cosmological constant.
The Effect of Cochlear Implantation on the Improvement of the Auditory Performance in 2-7 Years old Children, Shiraz 2004-2008

Background Hearing loss is the most common sensorineural deficiency in human beings. Cochlear implantation is introduced worldwide to treat the severe to profound sensorineural hearing loss, and can result in both speech comprehension and production. Objectives The present study aims to determine the effect of cochlear implantation on the improvement of the auditory performance in 2-7 years old children. Patients and Methods The present follow-up study is a kind of cohort study which was conducted on 98 children between 2-7 years old who had referred to Fars Cochlear Implantation Center. The patients’ information was gathered from their profiles both before and after the operation. The auditory performance score was obtained in 3 stages; 6 months, 1 year, and 2 years after the cochlear implantation through the Cap test. The data was analyzed using the nonparametric Friedman test as well as Mann-Withney, Kruskal-Wallis, and Spearman's Ranks Correlation coefficients. Results The mean and the median of the auditory performance score of the children who had undergone the cochlear implantation revealed a significant improvement from 6 months to 1 year, and 2 years after the implantation. It showed a significant statistical association between implantation age, type of hearing loss, regular reference, and the length of being present in the rehabilitation program with the auditory performance. It showed no significant association between sex, mother’s level of education, being monolingual or bilingual, and family size with the auditory performance. Conclusions This study revealed that the type of hearing loss, Presence in the rehabilitation program, and the age of cochlear implantation can be major prognostic factors of the response to the treatment, then the country’s health policy makers and health planners must executively take into account the infants’ hearing screening program during the first 6 month of age.
Large enhancement of canine taste responses to sugars by salts

The effects of changed ionic environments on the canine taste responses to sugars were examined by recording the activity of the chorda tympani nerve. a) The responses to various sugars were greatly enhanced by the presence of salts having monovalent cations such as Na+, K+, choline+, or Tris+. The responses to sugars were suppressed by high concentrations of salts. (b) The presence of 100 mM NaCl in fructose solution did not affect the maximal response and changed the Hill constant for the concentration-response relationship from 1.3 to 2.4. (c) CaCl2 greatly enhanced the response to fructose, while MgCl2 exhibited practically no effect. The presence of 20 mM CaCl2 in fructose solution changed the Hill constant from 1.2 to 2.4. (d) CaCl2 suppressed the responses to 0.5 M sugars except for fructose and sucrose and enhanced the responses to all sugars examined at 1 M. In the glucose response, the slope of the concentration-response curve was increased by the presence of CaCl2. Here the curve in the absence of CaCl2 intersected with that in the presence of CaCl2, indicating that CaCl2 suppressed the response to glucose of low concentrations and enhanced that of high concentrations. (e) The enhancement of the sugar responses by salts was not simply explained in terms of ionic permeability at the apical membranes of taste cells. The enhanced and suppressed effects of salts on the sugar responses were interpreted in terms of the cooperativity between receptor molecules for sugars.
An Atypical psbA Gene Encodes a Sentinel D1 Protein to Form a Physiologically Relevant Inactive Photosystem II Complex in Cyanobacteria*

Background: Unicellular cyanobacteria separate photosynthesis and nitrogen fixation using a day-night cycle. Results: Cyanothece 51142 expresses a D1 protein exclusively in the dark period that assembles nonfunctional photosystem II. Conclusion: The unusual D1 is named sentinel D1 because it prevents photosynthesis from occurring during nitrogen fixation. Significance: Expression of sentinel D1 allows photosynthesis and nitrogen fixation to coexist in the cell. Photosystem II, a large membrane-bound enzyme complex in cyanobacteria and chloroplasts, mediates light-induced oxidation of water to molecular oxygen. The D1 protein of PSII, encoded by the psbA gene, provides multiple ligands for cofactors crucial to this enzymatic reaction. Cyanobacteria contain multiple psbA genes that respond to various physiological cues and environmental factors. Certain unicellular cyanobacterial cells, such as Cyanothece sp. ATCC 51142, are capable of nitrogen fixation, a highly oxygen-sensitive process, by separating oxygen evolution from nitrogen fixation using a day-night cycle. We have shown that c-psbA4, one of the five psbA orthologs in this cyanobacterium, is exclusively expressed during nighttime. Remarkably, the corresponding D1 isoform has replacements of a number of amino acids that are essential ligands for the catalytic Mn4CaO5 metal center for water oxidation by PSII. At least 30 cyanobacterial strains, most of which are known to have nitrogen fixing abilities, have similar psbA orthologs. We expressed the c-psbA4 gene from Cyanothece 51142 in a 4E-3 mutant strain of the model non-nitrogen-fixing cyanobacterium Synechocystis sp. PCC 6803, which lacks any psbA gene. The resultant strain could not grow photoautotrophically. Moreover, these Synechocystis 6803 cells were incapable of PSII-mediated oxygen evolution. Based on our findings, we have named this physiologically relevant, unusual D1 isoform sentinel D1. Sentinel D1 represents a new class of D1 protein that, when incorporated in a PSII complex, ensures that PSII cannot mediate water oxidation, thus allowing oxygen-sensitive processes such as nitrogen fixation to occur in cyanobacterial cells.
Integrated feature architecture selection

In this paper, we present an integrated approach to feature and architecture selection for single hidden layer-feedforward neural networks trained via backpropagation. In our approach, we adopt a statistical model building perspective in which we analyze neural networks within a nonlinear regression framework. The algorithm presented in this paper employs a likelihood-ratio test statistic as a model selection criterion. This criterion is used in a sequential procedure aimed at selecting the best neural network given an initial architecture as determined by heuristic rules. Application results for an object recognition problem demonstrate the selection algorithm's effectiveness in identifying reduced neural networks with equivalent prediction accuracy.
Perturbation of the direction of neurite growth by pulsed and focal electric fields

We have studied the orientation of neurite growth in the culture of embryonic Xenopus neurons in response to three types of extracellular electric fields: spatially uniform pulsed fields, focally applied steady (DC) fields, and focally applied pulsed fields. Under uniform pulsed fields, neurites showed a preferential orientation toward the cathode pole of the field in a manner similar to that previously found for DC fields. The extent of neurite orientation depended upon the duration, amplitude, and frequency of the pulse but appeared to be similar to that produced by a uniform DC field of an equivalent time- averaged field intensity. For square pulses of 5 msec duration, the minimal amplitude and frequency required to produce a detectable orientation of neurite growth over a period of 24 hr were 2.5 V/cm and 10 Hz, which correspond to a time-averaged field intensity of 125 mV/cm. Steady or pulsed focal fields were applied by passing a current through a micropipette placed near the growth cone of the neurite. Fields of negative polarity (current sink) were found to attract the growth cone, whereas fields of positive polarity (current source) were found to deflect the growth cone away from the pipette. The threshold DC current density needed at the growth cone to perturb its direction of growth within 15 min was 0.2 to 2 pA/micron2 (or 3 to 30 mV/cm); and for focal pulsed currents (pulse duration 5 msec), a typical combination of minimal pulse amplitude and frequency was 4 pA/micron2 and 10 Hz. This threshold focal current is similar to that which occurs at the synaptic cleft during active synaptic activity.
Use of Competition ELISA for Monitoring of West Nile Virus infections in Horses in Germany

West Nile virus (WNV) is a mosquito-borne viral pathogen of global importance and is considered to be the most widespread flavivirus in the World. Horses, as dead-end hosts, can be infected by bridge mosquito vectors and undergo either subclinical infections or develop severe neurological diseases. The aim of this study was to detect WNV specific antibodies in horses in Germany as an indicator for an endemic circulation of WNV. Sera from more than 5,000 horses (primarily fallen stock animals) were collected in eight different federal states of Germany from 2010 to 2012. Sera were screened by a competitive ELISA and positive reactions were verified by an indirect IgM ELISA and/or by virus neutralization tests (VNT) for WNV and Tick-borne encephalitis virus (TBEV) in order to exclude cross-reacting antibody reactions. In essence WNV specific antibodies could not be detected in any of the horse sera. Not surprisingly, a small number of sera contained antibodies against TBEV. It is noteworthy that equine sera were often collected from horse carcasses and therefore were of poor quality. Nonetheless, these sera were still suitable for WNV ELISA testing, i.e., they did not produce a high background reaction which is a frequently observed phenomenon. According to these data there is no evidence for indigenous WNV infections in horses in Germany at present.
Dynamic key frame presentation techniques for augmenting video browsing

Because of unique temporal and spatial properties of video data, different techniques for summarizing videos have been proposed. Key frames extracted directly from video inform users about content without requiring them to view the entire video. As part of ongoing work to develop video browsing interfaces, several interface displays based on key frames were investigated. Variations on dynamic key frame "slide shows" were examined and compared to a static key frame "filmstrip" display. The slide show mechanism displays key frames in rapid succession and is designed to facilitate visual browsing by exploiting human perceptual capabilities. User studies were conducted in a series of three experiments. Key frame display rate, number of simultaneous displays, and user perception were investigated as a function of user performance in object recognition and gist determination tasks. No significant performance degradation was detected at display rates up to 8 key frames per second, but performance degraded significantly at higher rates. Performance on gist determination tasks degraded less severely than performance on object recognition tasks as display rates increased. Furthermore, gist determination performance dropped significantly between three and four simultaneous slide shows in a single display. Users generally preferred key frame filmstrips to dynamic displays, although objective measures of performance were mixed. Implications for visual interface design and further questions for future research are provided.
Increased Genome Instability in Escherichia coli lon Mutants: Relation to Emergence of Multiple-Antibiotic-Resistant (Mar) Mutants Caused by Insertion Sequence Elements and Large Tandem Genomic Amplifications

ABSTRACT Thirteen spontaneous multiple-antibiotic-resistant (Mar) mutants of Escherichia coli AG100 were isolated on Luria-Bertani (LB) agar in the presence of tetracycline (4 μg/ml). The phenotype was linked to insertion sequence (IS) insertions in marR or acrR or unstable large tandem genomic amplifications which included acrAB and which were bordered by IS3 or IS5 sequences. Five different lon mutations, not related to the Mar phenotype, were also found in 12 of the 13 mutants. Under specific selective conditions, most drug-resistant mutants appearing late on the selective plates evolved from a subpopulation of AG100 with lon mutations. That the lon locus was involved in the evolution to low levels of multidrug resistance was supported by the following findings: (i) AG100 grown in LB broth had an important spontaneous subpopulation (about 3.7 × 10−4) of lon::IS186 mutants, (ii) new lon mutants appeared during the selection on antibiotic-containing agar plates, (iii) lon mutants could slowly grow in the presence of low amounts (about 2× MIC of the wild type) of chloramphenicol or tetracycline, and (iv) a lon mutation conferred a mutator phenotype which increased IS transposition and genome rearrangements. The association between lon mutations and mutations causing the Mar phenotype was dependent on the medium (LB versus MacConkey medium) and the antibiotic used for the selection. A previously reported unstable amplifiable high-level resistance observed after the prolonged growth of Mar mutants in a low concentration of tetracycline or chloramphenicol can be explained by genomic amplification.
Beneficial effects of leukocyte depletion of transfused blood on postoperative complications in patients undergoing cardiac surgery: a randomized clinical trial.

BACKGROUND Leukocytes in transfused blood are associated with several posttransfusion immunomodulatory effects. Although leukocytes play an important role in reperfusion injury, the contribution of leukocytes in transfused blood products has not been investigated. To estimate the role and the timing of leukocyte filtration of red cells in cardiac surgery, we performed a randomized study. METHODS AND RESULTS Patients scheduled for cardiac surgery were randomly allocated to receive either packed cells without buffy coat (PC, n = 306), fresh-filtered units (FF, n = 305), or stored-filtered units (SF, n = 303) when transfusion was indicated. We evaluated the periods of hospitalization and stay at the intensive care unit, and the occurrences of postoperative complications up to 60 days after surgery. The average hospital stay was 10.7 days, of which 3.2 days were in the intensive care unit, without significant differences between the groups. In the PC trial arm, 23.0% of the patients had infections versus 16.9% and 17.9% of the patients in the leukocyte-depleted trial arms (P=.13). Within 60 days, 45 patients had died, 24 patients in the PC trial arm (7.8%), versus 11 (3.6%) and 10 (3.3%) patients in the FF and SF trial arms, respectively (P=.015). CONCLUSIONS In cardiac surgery patients, especially when more than three blood transfusions are required, leukocyte depletion by filtration results in a significant reduction of the postoperative mortality that can only partially be explained by the higher incidence of postoperative infections in the PC group.
(p+, α)-sensitive k-anonymity: A new enhanced privacy protection model

Publishing data for analysis from a microdata table containing sensitive attributes, while maintaining individual privacy, is a problem of increasing significance today. The k-anonymity model was proposed for privacy preserving data publication. While focusing on identity disclosure, k-anonymity model fails to protect attribute disclosure to some extent. Many efforts are made to enhance the k-anonymity model recently. In this paper, we propose a new privacy protection model called (p+, alpha)-sensitive k-anonymity, where sensitive attributes are first partitioned into categories by their sensitivity, and then the categories that sensitive attributes belong to are published. Different from previous enhanced k-anonymity models, this model allows us to release a lot more information without compromising privacy. We also provide testing and heuristic generating algorithms. Experimental results show that our introduced model could significantly reduce the privacy breach.
A New Poly(ADP-Ribose) Polymerase Inhibitor, FR261529 [2-(4-Chlorophenyl)-5-quinoxalinecarboxamide], Ameliorates Methamphetamine-Induced Dopaminergic Neurotoxicity in Mice

Methamphetamine (METH) administration in mice, results in a chronic dopamine (DA) depletion associated with nerve terminal damage, with DA oxidation and generation of reactive oxygen species (ROS) primarily mediating this neurotoxicity. The oxidative stress induced by METH putatively activates nuclear enzyme poly(ADP-ribose) polymerase (PARP), with excessive PARP activation eventually leading to cell death. In this study, we show that prevention of PARP activation by treatment with FR261529 [2-(4-chlorophenyl)-5-quinoxalinecarboxamide], the compound that was recently identified as a novel PARP inhibitor (IC50 for PARP-1 = 33 nM, IC50 for PARP-2 = 7 nM), protects against both ROS-induced cells injury in vitro and METH-induced dopaminergic neuronal damage in an in vivo Parkinson's disease (PD) model. In PC12 cells, exposure of hydrogen peroxide or METH markedly induced PARP activation, and treatment with FR261529 (1 μM) significantly reduced PARP activation and attenuated cell death. In the mouse METH model, METH (15 mg/kg × 2 i.p., 2 h apart) intoxication accelerated DA metabolism and oxidation in the striatum, with subsequent cell damage in nigrostriatal dopaminergic neurons after 4 days. Oral administration of FR261529 (10 or 32 mg/kg) attenuated the damage of dopaminergic neurons via marked reduction of PARP activity and not via changes in dopamine metabolism or body temperature. These findings indicate that the neuroprotective effects of a novel PARP inhibitor, FR261529, were accompanied by inhibition of METH-induced PARP activation, suggesting that METH induces nigrostriatal dopaminergic neurodegeneration involving PARP activation and also orally active and brain-penetrable PARP inhibitor FR261529 could be a novel attractive therapeutic candidate for neurodegenerative disorders such as PD.
Intraductal Optical Coherence Tomography for Investigating Main Pancreatic Duct Strictures

BACKGROUND AND STUDY AIMS:Optical coherence tomography (OCT) permits high-resolution imaging of tissue microstructures using a probe that can be inserted into the main pancreatic duct (MPD) through a standard endoscopic retrograde cholangiopancreatography (ERCP) catheter. This prospective study was designed to assess the diagnostic capacity of OCT to differentiate between nonneoplastic and neoplastic lesions in patients with MPD segmental strictures.PATIENTS AND METHODS:Twelve consecutive patients with documented MPD segmental stricture were investigated by endoscopic ultrasonography (EUS), with fine-needle aspiration cytology if necessary, and ERCP, followed by brush cytology and OCT scanning.RESULTS:OCT recognized a differentiated three-layer architecture in all cases with normal MPD or chronic pancreatitis, while in all the neoplastic lesions the layer architecture appeared totally subverted, with heterogeneous backscattering of the signal. The accuracy of OCT for detection of neoplastic tissue was 100% compared with 66.7% for brush cytology. In one case, neither OCT scanning nor brush cytology was possible because of the severity of the stricture.CONCLUSIONS:This pilot study showed that OCT is feasible during ERCP, in cases of MPD segmental stricture, and was superior to brush cytology in distinguishing nonneoplastic from neoplastic lesions.
A monoclonal antibody defines a geographically conserved surface protein epitope of Babesia equi merozoites

Babesiosis is a tick-borne hemoparasitic disease affecting horses worldwide. To investigate mechanisms of immunity to this parasite, the antibody response of infected horses to Babesia equi merozoite proteins was evaluated. Immunoprecipitation of B. equi merozoite antigens with sera from infected horses revealed 11 major proteins of 210, 144, 108, 88, 70, 56, 44, 36, 34, 28, and 25 kDa. Monoclonal antibody (MAb) 36/133.97, which binds to live merozoites, immunoprecipitated proteins of 44, 36, 34, and 28 kDa. When immunoprecipitations were performed with in vitro translation products of merozoite mRNA, MAb 36/133.97 immunoprecipitated proteins of 38, 28, 26, and 23 kDa which comigrated with proteins immunoprecipitated by sera from infected horses at 10(-3) to 10(-4) dilutions. In Western blot analysis, MAb 36/133.97 recognized proteins of 44, 36, 34, and 28 kDa, and a 28-kDa protein was identified by sera from infected horses at a dilution of 10(-4). MAb 36/133.97 bound to B. equi isolates from Florida and Europe. Furthermore, the binding of MAb 36/133.97 to merozoite proteins was inhibited by sera of infected horses from 19 countries. Collectively, these data indicate MAb 36/133.97 binds to a geographically conserved peptide epitope on multiple B. equi merozoite proteins, including a merozoite surface protein, and MAb 36/133.97 reacts with a B. equi protein immunodominant in infected horses.