Miracle-dz/UniFAR-FTUs huggingface dataset:
Differential expression of CC chemokines (CCLs) and receptors (CCRs) by human T lymphocytes in response to different Aggregatibacter actinomycetemcomitans serotypes

In Aggregatibacter actinomycetemcomitans, different serotypes have been described based on LPS antigenicity. Recently, our research group has reported a differential immunogenicity when T lymphocytes were stimulated with these different serotypes. In particular, it was demonstrated that the serotype b of A. actinomycetemcomitans has a stronger capacity to trigger Th1- and Th17-type cytokine production. Objective This study aimed to quantify the expression of different CC chemokines (CCLs) and receptors (CCRs) in T lymphocytes stimulated with the different A. actinomycetemcomitans serotypes. In addition, the expression of the transcription factors T-bet, GATA-3, RORC2, and Foxp3, master-switch genes implied in the Th1, Th2, Th17, and T-regulatory differentiation, respectively, was analysed in order to determine T-cell phenotype-specific patterns of CCL and CCR expression upon A. actinomycetemcomitans stimulation. Material and Methods Human naïve CD4+ T lymphocytes were obtained from healthy subjects and stimulated with autologous dendritic cells primed with the different A. actinomycetemcomitans serotypes. The expression levels for the chemokines CCL1, CCL2, CCL3, CCL5, CCL11, CCL17, CCL20, CCL21, CCL25, and CCL28, as well as the chemokine receptors CCR1, CCR2, CCR3, CCR4, CCR5, CCR6, CCR7, CCR8, CCR9, and CCR10 were quantified by qPCR. Similarly, the expression levels for the transcription factors T-bet, GATA-3, RORC2, and Foxp3 were quantified and correlated with the CCL and CCR expression levels. Results Higher expression levels of CCL2, CCL3, CCL5, CCL20, CCL21, CCL28, CCR1, CCR2, CCR5, CCR6, CCR7, and CCR9 were detected in T lymphocytes stimulated with the serotype b of A. actinomycetemcomitans compared with the other serotypes. In addition, these higher expression levels of CCLs and CCRs positively correlated with the increased levels of T-bet and RORC2 when T lymphocytes were stimulated with the serotype b. Conclusion A T-lymphocyte response biased towards a Th1- and Th17-pattern of CCL and CCR expression was detected under stimulation with the serotype b of A. actinomycetemcomitans.
Liposome-based carrier systems and devices used for pulmonary drug delivery

Liposomes are spherical lipid carrier vesicles that vary in size (typically in the range of 20. nm to 20. I¼m), and are composed of single or multi-concentric bilayers, and have the ability to entrap both hydrophilic therapeutic agents within their central aqueous core or lipophilic drugs within their bilayer compartment. These carriers can transport drugs to particular sites of action within the pulmonary system by employing specially designed delivery devices. These devices work through specific mechanisms and their performance depends upon the formulation. Dry powder inhalers deliver dry powdered formulations. By contrast, pressurized metered dose inhalers deliver liquid formulations when an appropriate liquefied propellant is included. However, nebulizers are capable of delivering aqueous suspensions or solutions with no need for inclusion of a propellant. Liposomes were first reported in 1965 and since then significant developments in liposome research have emerged. Liposomes are now well established as carrier systems that accommodate therapeutic agents and deliver them to various sites in the body. Liposomes can sustain the release of the entrapped therapeutic materials, hence enhancing the therapeutic outcome. Liposome carrier systems have been studied extensively for prophylaxis against and the treatment of pulmonary diseases. Â© 2013 Woodhead Publishing Limited All rights reserved.
Special Thematic Section on " Decolonizing Psychological Science " A Postcolonial Feminist Critique of Harem Analogies in Psychological Science

Since the 1930s, psychologists have used the term harem as an analogy for social relations among animals. In doing so they draw upon gendered and racial stereotypes located in the history of colonialism. We present an experimental study on the harem analogy as a means of confronting and challenging colonial undercurrents in psychological science. We investigated whether the use of this colonialist image in studies of animal societies could subtly affect thinking about Middle Eastern Muslim people. Two-hundred and forty-nine participants read about animal societies; in the experimental condition these were described as “harems” and accompanied by the analogy of harems in Middle Eastern Muslim societies. In the two control conditions, animal societies were either described as “groups” or “harems”, with no mention of the analogy. In the experimental condition, participants falsely remembered descriptions of Muslim people of the Middle East as applying to animals. This finding replicates the “resistance is futile” effect (Blanchette & Dunbar, 2002; Perrott, Gentner, & Bodenhausen, 2005) by which false remembering of analogical statements as previously seen literal descriptions is taken as suggestive of analogical mapping between two disparate concepts. As such, the study contributes to debate between feminist and evolutionary psychology about the value-neutrality of psychology, and to postcolonial critique of the partiality of mainstream psychological accounts of the universality of nature and society.
Pleural, peritoneal and pericardial effusions – a biochemical approach

The pathological accumulation of serous fluids in the pleural, peritoneal and pericardial space occurs in a variety of conditions. Since patient management depends on right and timely diagnosis, biochemical analysis of extravascular body fluids is considered a valuable tool in the patient management process. The biochemical evaluation of serous fluids includes the determination of gross appearance, differentiation of transudative from exudative effusions and additional specific biochemical testing to assess the effusion etiology. This article summarized data from the most relevant literature concerning practice with special emphasis on usefulness of biochemical tests used for the investigation of pleural, peritoneal and pericardial effusions. Additionally, preanalytical issues concerning serous fluid analysis were addressed and recommendations concerning acceptable analytical practice in serous fluid analysis were presented.
Endurance Exercise in Aging Humans: Effects on Energy Metabolism

In summary, data suggest that the decline in RMR with advancing age is primarily related to the decline in fat-free mass. However, in addition to the erosion of fat-free mass, other factors such as Na-K pump activity, fat mass, maximal aerobic power, and menopausal status are important determinants influencing the decline in RMR in older individuals. Second, we provide revised prediction equations for RMR that are both gender- and sex-specific and use easily measured variables to facilitate their use in clinical and field settings. Third, preliminary studies suggest that older individuals may have a reduced energy expenditure following meal ingestion, although this is not a universal finding among investigators. Furthermore, several studies suggest that physically active older men exhibit higher thermic responses to a meal than sedentary older men. Data on total energy expenditure in free-living elderly persons are sparse. However, the available data suggest that there is large variation in total energy expenditure in the elderly population, caused primarily by differences in physical activity. The heterogeneity in physical activity makes estimation of individual energy requirements difficult. However, preliminary studies have suggested that measurement of VO2max and other activity indices may be useful markers for estimating energy requirements on an individual basis. Furthermore, attempting to "normalize" total energy expenditure in the elderly by prescribing physical activity is not as straightforward as it seems, due to exercise-induced compensatory reductions in physical activity during the remainder of the day. Levels of insulin-like growth factor-1 decline with advancing age. Preliminary evidence from cross-sectional and exercise intervention studies suggest that the lower serum levels of IGF-1 in older individuals may be partially due to diminished physical activity. Aging is associated with an increase in fasting levels of norepinephrine, primarily influenced by an elevated rate of norepinephrine into circulation; however, the clinical significance of the elevated sympathetic tone is unclear. Endurance training in older individuals has been found to increase basal levels of norepinephrine appearance into circulation, and this has been associated with an increased RMR and enhanced fat oxidation. Optimal exercise interventions need to be identified for the elderly, which maximally increase daily energy expenditure and offset metabolic deterioration with advancing age.
Abnormal Dosage of Ultraconserved Elements Is Highly Disfavored in Healthy Cells but Not Cancer Cells

Ultraconserved elements (UCEs) are strongly depleted from segmental duplications and copy number variations (CNVs) in the human genome, suggesting that deletion or duplication of a UCE can be deleterious to the mammalian cell. Here we address the process by which CNVs become depleted of UCEs. We begin by showing that depletion for UCEs characterizes the most recent large-scale human CNV datasets and then find that even newly formed de novo CNVs, which have passed through meiosis at most once, are significantly depleted for UCEs. In striking contrast, CNVs arising specifically in cancer cells are, as a rule, not depleted for UCEs and can even become significantly enriched. This observation raises the possibility that CNVs that arise somatically and are relatively newly formed are less likely to have established a CNV profile that is depleted for UCEs. Alternatively, lack of depletion for UCEs from cancer CNVs may reflect the diseased state. In support of this latter explanation, somatic CNVs that are not associated with disease are depleted for UCEs. Finally, we show that it is possible to observe the CNVs of induced pluripotent stem (iPS) cells become depleted of UCEs over time, suggesting that depletion may be established through selection against UCE-disrupting CNVs without the requirement for meiotic divisions.
Blockade of dopamine D1-family receptors attenuates the mania-like hyperactive, risk-preferring, and high motivation behavioral profile of mice with low dopamine transporter levels

Background: Patients with bipolar disorder mania exhibit poor cognition, impulsivity, risk-taking, and goal-directed activity that negatively impact their quality of life. To date, existing treatments for bipolar disorder do not adequately remediate cognitive dysfunction. Reducing dopamine transporter expression recreates many bipolar disorder mania-relevant behaviors (i.e. hyperactivity and risk-taking). The current study investigated whether dopamine D1-family receptor blockade would attenuate the risk-taking, hypermotivation, and hyperactivity of dopamine transporter knockdown mice. Methods: Dopamine transporter knockdown and wild-type littermate mice were tested in mouse versions of the Iowa Gambling Task (risk-taking), Progressive Ratio Breakpoint Test (effortful motivation), and Behavioral Pattern Monitor (activity). Prior to testing, the mice were treated with the dopamine D1-family receptor antagonist SCH 23390 hydrochloride (0.03, 0.1, or 0.3 mg/kg), or vehicle. Results: Dopamine transporter knockdown mice exhibited hyperactivity and hyperexploration, hypermotivation, and risk-taking preference compared with wild-type littermates. SCH 23390 hydrochloride treatment decreased premature responding in dopamine transporter knockdown mice and attenuated their hypermotivation. SCH 23390 hydrochloride flattened the safe/risk preference, while reducing activity and exploratory levels of both genotypes similarly. Conclusions: Dopamine transporter knockdown mice exhibited mania-relevant behavior compared to wild-type mice. Systemic dopamine D1-family receptor antagonism attenuated these behaviors in dopamine transporter knockdown, but not all effects were specific to only the knockdown mice. The normalization of behavior via blockade of dopamine D1-family receptors supports the hypothesis that D1 and/or D5 receptors could contribute to the mania-relevant behaviors of dopamine transporter knockdown mice.
Evaluating the Factors Affecting DSS Usage by Senior Managers in Local Authorities in Egypt

The study of factors influencing the adoption and use of information systems in less-developed countries is an important area to address since differences in culture, social structure, and business approaches may have significant effects on the benefits derived from importing Western-influenced IT technology, concepts, and management approaches. This study examines the usage of a decision support system (DSS) in Egyptian local authorities using an adapted Technology Acceptance Model (TAM). The centrally-developed DSS had been rolled out to 27 governorates in Egypt for use by chief executive officers. The results demonstrated that TAM could be applied to a specific system within a developing country. Both perceived ease of use (PEU) and perceived usefulness (PU) had a significant direct effect on DSS usage. PEU dominated over PU whose effect on DSS usage was negative.
Mathematical modeling of creep and shrinkage of concrete

Part 1 Memorials: Robert L'Hermite and his legacy, M.Fickelson the impact of Robert L'Hermite on the evolution of creep and shrinkage theory, Z.P.Bazant a tribute to Douglas McHenry, B.Bresler Hubert Rusch and his legacy, H.Hilsdorf. Part 2 State-of-the-art in mathematical modelling of creep and shrinkage in concrete: physical mechanisms and their mathematical description, J.F. Young et al material models for structural creep analysis, Z.P.Bazant et al creep and shrinkage analysis of structures, O.Buyukozturk et al finite element analysis of creep and shrinkage, C.A. Anderson et al probabilistic models, T.Tsubaki et al conclusions for structural analysis and for formulation of standard design recommendations. Part 3 Summaries of discussions from the symposium: physical mechanisms and their mathematical description, U.Schneider material models, P.E. Roelfstra structural analysis, V.Kristek finite element analysis, L.Cedolin uncertainty of creep and shrinkage predictions, S.G. Reid current research in material modelling, J.W. Dougill current research in structural analysis, B.Espion. Appendices: list of lectures and papers presented at the symposium list of participants.
Corneal Reshaping and Wavefront Aberrations During Overnight Orthokeratology

Purpose: To investigate changes of corneal thickness at the vertical and horizontal meridians and of wavefront aberrations (WA) over a 30-day period of overnight myopia orthokeratology (OK) lens wear. Methods: Sixteen subjects (11 women, 5 men, 26.3±3.2 years) were enrolled and fitted for OK lenses. Long scan depth optical coherence tomography was used to measure corneal thickness profiles at both horizontal and vertical meridians at baseline and on days 1, 7, and 30 days. Corneal and ocular WA of a 6-mm pupil were measured and the root-mean-square (RMS) of the astigmatism, coma, spherical aberration (SA), and total higher-order aberrations (HOAs) were determined. Results: During the 30-day period, the central cornea thinned in the horizontal and vertical meridians, whereas corneal thickening occurred in the temporal, nasal, and inferior mid-peripheries. In contrast, the cornea thinned in the mid-peripheral superior. There were significant increases in RMS for astigmatism, SA, coma, and positive horizontal coma during the study period. After OK, there were significant positive correlations between the midperipheral-central thickness change difference and the changes in corneal and ocular RMS of total HOAs and SA (r range: 0.281 to 0.492, P<0.05). Only the change of corneal coma RMS was correlated with midperipheral-central thickness change difference (r=0.270, P<0.05). The change in corneal horizontal coma was correlated with the temporal-nasal thickness change difference (r=−0.289, P<0.05). Conclusions: Overnight OK caused unique changes in corneal thickness profiles at the vertical and horizontal meridians and increased corneal and ocular HOAs related to corneal reshaping.
Does adipose tissue influence bioelectric impedance in obese men and women?

Bioelectric-impedance analysis overestimates fat-free mass in obese people. No clear hypotheses have been presented or tested that explain this effect. This study tested the hypothesis that adipose tissue affects measurements of resistance by using data for whole body and body segment resistance and by using muscle, adipose tissue, and bone volumes from magnetic resonance imaging for 86 overweight and obese men and women (body mass index > 27 kg/m2; age 38.5 +/- 10.2 yr). In multiple-regression analysis, muscle volumes had strong associations with resistance, confirming that the electric currents are conducted primarily in the lean soft tissues. Subcutaneous adipose tissue had a slight but statistically significant effect in women, primarily for the leg, suggesting that adipose tissue can affect measured resistance when the volume of adipose tissue is greater than muscle volume, as may occur in obese women in particular. This resulted in a slight overestimation of fat-free mass (e.g., +3 kg) when a bioelectric-impedance-analysis equation calibrated for nonobese female subjects was applied.
The Phylogenetic Indian Buffet Process: A Non-Exchangeable Nonparametric Prior for Latent Features

Nonparametric Bayesian models are often based on the assumption that the objects being modeled are exchangeable. While appropriate in some applications (e.g., bag-of-words models for documents), exchangeability is sometimes assumed simply for computational reasons; non-exchangeable models might be a better choice for applications based on subject matter. Drawing on ideas from graphical models and phylogenetics, we describe a non-exchangeable prior for a class of nonparametric latent feature models that is nearly as efficient computationally as its exchangeable counterpart. Our model is applicable to the general setting in which the dependencies between objects can be expressed using a tree, where edge lengths indicate the strength of relationships. We demonstrate an application to modeling probabilistic choice.
Hypoxia Up-Regulates Galectin-3 in Mammary Tumor Progression and Metastasis

The tumor microenvironment encompasses several stressful conditions for cancer cells such as hypoxia, oxidative stress and pH alterations. Galectin-3, a well-studied member of the beta-galactoside-binding animal family of lectins has been implicated in multiple steps of metastasis as cell-cell and cell-ECM adhesion, promotion of angiogenesis, cell proliferation and resistance to apoptosis. However, both its aberrantly up- and down-regulated expression was observed in several types of cancer. Thus, the mechanisms that regulate galectin-3 expression in neoplastic settings are not clear. In order to demonstrate the putative role of hypoxia in regulating galectin-3 expression in canine mammary tumors (CMT), in vitro and in vivo studies were performed. In malignant CMT cells, hypoxia was observed to induce expression of galectin-3, a phenomenon that was almost completely prevented by catalase treatment of CMT-U27 cells. Increased galectin-3 expression was confirmed at the mRNA level. Under hypoxic conditions the expression of galectin-3 shifts from a predominant nuclear location to cytoplasmic and membrane expressions. In in vivo studies, galectin-3 was overexpressed in hypoxic areas of primary tumors and well-established metastases. Tumor hypoxia thus up-regulates the expression of galectin-3, which may in turn increase tumor aggressiveness.
A model for /spl mu/-power rectifier analysis and design

This paper proposes a linear two-port model for an N-stage modified-Greinacher full-wave rectifier. It predicts the overall conversion efficiency at low power levels where the diodes are operating near their threshold voltage. The output electrical behavior of the rectifier is calculated as a function of the received power and the antenna parameters. Moreover, the two-port parameter values are computed for particular input voltages and output currents for the complete N-stage rectifier circuit using only the measured I-V and C-V characteristics of a single diode. To validate the model a three-stage modified-Greinacher full-wave rectifier was realized in an silicon-on-sapphire (SOS) CMOS 0.5-/spl mu/m technology. The measurements are in excellent agreement with the values calculated using the presented model.
Parallel ClickSeq and Nanopore sequencing elucidates the rapid evolution of defective-interfering RNAs in Flock House virus

Defective-Interfering RNAs (DI-RNAs) have long been known to play an important role in virus replication and transmission. DI-RNAs emerge during virus passaging in both cell-culture and their hosts as a result of non-homologous RNA recombination. However, the principles of DI-RNA emergence and their subsequent evolution have remained elusive. Using a combination of long- and short-read Next-Generation Sequencing, we have characterized the formation of DI-RNAs during serial passaging of Flock House virus (FHV) in cell-culture over a period of 30 days in order to elucidate the pathways and potential mechanisms of DI-RNA emergence and evolution. For short-read RNAseq, we employed ‘ClickSeq’ due to its ability to sensitively and confidently detect RNA recombination events with nucleotide resolution. In parallel, we used the Oxford Nanopore Technologies’s (ONT) MinION to resolve full-length defective and wild-type viral genomes. Together, these accurately resolve both rare and common RNA recombination events, determine the correlation between recombination events, and quantifies the relative abundance of different DI-RNAs throughout passaging. We observe the formation of a diverse pool of defective RNAs at each stage of viral passaging. However, many of these ‘intermediate’ species, while present in early stages of passaging, do not accumulate. After approximately 9 days of passaging we observe the rapid accumulation of DI-RNAs with a correlated reduction in specific infectivity and with the Nanopore data find that DI-RNAs are characterized by multiple RNA recombination events. This suggests that intermediate DI-RNA species are not competitive and that multiple recombination events interact epistatically to confer ‘mature’ DI-RNAs with their selective advantage allowing for their rapid accumulation. Alternatively, it is possible that mature DI-RNA species are generated in a single event involving multiple RNA rearrangements. These insights have important consequences for our understanding of the mechanisms, determinants and limitations in the emergence and evolution of DI-RNAs.
Subquadratic zero-knowledge

The communication complexity of zero-knowledge proof systems is improved. Let C be a Boolean circuit of size n. Previous zero-knowledge proof systems for the satisfiability of C require the use of Omega (kn) bit commitments in order to achieve a probability of undetected cheating not greater than 2/sup -k/. In the case k=n, the communication complexity of these protocols is therefore Omega (n/sup 2/) bit commitments. A zero-knowledge proof is given for achieving the same goal with only O(n/sup m/+k square root n/sup m/) bit commitments, where m=1+ epsilon /sub n/ and epsilon /sub n/ goes to zero as n goes to infinity. In the case k=n, this is O(n square root n/sup m/). Moreover, only O(k) commitments need ever be opened, which is interesting if committing to a bit is significantly less expensive than opening a commitment. <<ETX>>