Miracle-dz/UniFAR-FTUs huggingface dataset:
Polymeric materials for corrosion control

This publication, part of the ACS Symposium Series No. 322, was developed from a symposium sponsored by the Division of Polymeric Materials Science and Engineering at the 190th ACS Meeting. The 31-chapter volume discusses polymeric coatings for metals and electronic assemblies with the principal focus on evaluating and selecting materials for use in corrosive environments. General topics include evaluation of materials performance, adhesion and interfacial aspects of corrosion protection, and materials for corrosion protection. Specific topics include electrochemical characterization of photo-cured coatings, performance aspects of plasma-deposited films, and polyurethane foam component lifetimes.
An Energy Efficient Ethernet Strategy Based on Traffic Prediction and Shaping

Recently, different communities in computer science, telecommunication, and control systems have devoted a huge effort towards the design of energy efficient solutions for data transmission and network management. This paper collocates along this research line and presents a novel energy efficient strategy conceived for Ethernet networks. The proposed strategy, which exploits the opportunities offered by the IEEE 802.3az amendment to the Ethernet standard (known as energy efficient Ethernet) is based on the possibility of predicting the future traffic from the analysis of the current data flow. In agreement with the results of such a dynamic prediction, Ethernet links can be forced into a low power consumption state for variable intervals. Theoretical bounds are derived to detail how the performance figures depend on the parameters of the designed strategy and scale with respect to traffic load. Furthermore, simulation results carried out with both real and synthetic traffic traces are presented to prove the effectiveness of the strategy, which leads to considerable energy savings at the cost of only a limited bounded delay in data delivery.
Effects of acamprosate on attentional set-shifting and cellular function in the prefrontal cortex of chronic alcohol-exposed mice.

BACKGROUND The medial prefrontal cortex (mPFC) inhibits impulsive and compulsive behaviors that characterize drug abuse and dependence. Acamprosate is the leading medication approved for the maintenance of abstinence, shown to reduce craving and relapse in animal models and human alcoholics. Whether acamprosate can modulate executive functions that are impaired by chronic ethanol (EtOH) exposure is unknown. Here we explored the effects of acamprosate on an attentional set-shifting task and tested whether these behavioral effects are correlated with modulation of glutamatergic synaptic transmission and intrinsic excitability of mPFC neurons. METHODS We induced alcohol dependence in mice via chronic intermittent EtOH (CIE) exposure in vapor chambers and measured changes in alcohol consumption in a limited access 2-bottle choice paradigm. Impairments of executive function were assessed in an attentional set-shifting task. Acamprosate was applied subchronically for 2 days during withdrawal before the final behavioral test. Alcohol-induced changes in cellular function of layer 5/6 pyramidal neurons, and the potential modulation of these changes by acamprosate, were measured using patch clamp recordings in brain slices. RESULTS Chronic EtOH exposure impaired cognitive flexibility in the attentional set-shifting task. Acamprosate improved overall performance and reduced perseveration. Recordings of mPFC neurons showed that chronic EtOH exposure increased use-dependent presynaptic transmitter release and enhanced postsynaptic N-methyl-D-aspartate receptor function. Moreover, CIE treatment lowered input resistance, and decreased the threshold and the after hyperpolarization of action potentials, suggesting chronic EtOH exposure also impacted membrane excitability of mPFC neurons. However, acamprosate treatment did not reverse these EtOH-induced changes cellular function. CONCLUSIONS Acamprosate improved attentional control of EtOH exposed animals, but did not alter the concurrent changes in synaptic transmission or membrane excitability of mPFC neurons, indicating that these changes are not the pharmacological targets of acamprosate in the recovery of mPFC functions affected by chronic EtOH exposure.
Dissemination of enteric Mycobacterium avium infections in mice rendered immunodeficient by thymectomy and CD4 depletion or by prior infection with murine AIDS retroviruses

This study shows that infection of mice with the murine AIDS virus LP-BM5 or Du5H profoundly depressed the capacity of splenic T cells from these animals to respond to the T-cell mitogen phytohemagglutinin or concanavalin A or to alloantigens. Similar effects were also observed if mice were thymectomized and then infused with monoclonal anti-CD4 antibody (TxCD4- mice). When such mice were infected intravenously with Mycobacterium avium, growth of the infection was markedly exacerbated in the TxCD4- mice or in mice given murine AIDS virus 2 months earlier. In view of these data, we then investigated whether such treatments might cause dissemination of M. avium following enteric implantation of bacteria into the mouse cecum; this route was chosen in an attempt to model events in AIDS patients, in which the gut appears to be one of the major portals of M. avium infection. In this model, the entry and hematogenous dissemination of four clinical isolates of M. avium were monitored against time and found to be accelerated and enhanced in T-cell-deficient mice. In view of this finding, these novel approaches for enteric infection that use immunodeficient mice are presented as potential new models for the evaluation of immunotherapy and chemotherapy in a setting that bears some similarity to events believed to occur in AIDS patients.
Reliability Analysis of Deduplicated and Erasure-Coded Storage

External Posting Date: October 21, 2010 [Fulltext] Approved for External Publication Internal Posting Date: October 21, 2010 [Fulltext]  Reliability Analysis of Deduplicated and Erasure-Coded Storage Xiaozhou Li, Mark Lillibridge; Mustafal Uysal HP Laboratories HPL-2010-146 Deduplication, erasure coding Space efficiency and data reliability are two primary concerns for modern storage systems. Chunk-based deduplication, which breaks up data objects into single-instance chunks that can be shared across objects, is an effective method for saving storage space. However, deduplication affects data reliability because an object's constituent chunks are often spread across a large number of disks, potentially decreasing the object's reliability. Therefore, an important problem in deduplicated storage is how to achieve space efficiency yet maintain each object's original reliability. In this paper, we present initial results on the reliability analysis of HP-KVS, a deduplicated key-value store that allows each object to specify its own reliability level and that uses software erasure coding for data reliability. The combination of deduplication and erasure coding gives rise to several interesting research problems. We show how to compare the reliability of erasure codes with different parameters and how to analyze the reliability of a big data object given its constituent parts' reliabilities. We also present a method for system designers to determine under what conditions deduplication will save space for erasure-coded data. Published in HotMetrics 2010, New York City, NY, USA, June 18, 2010. Copyright HotMetrics 2010. Reliability Analysis of Deduplicated and Erasure-Coded Storage (HP Labs Technical Report HPL-2010-146) Xiaozhou Li Mark Lillibridge Hewlett-Packard Laboratories 1501 Page Mill Road Palo Alto, CA firstname.lastname@hp.com Mustafa Uysal ∗ VMware 3401 Hillview Avenue Palo Alto, CA
Surgical treatment of 60 patients with pulmonary malformations: what have we learned?

OBJECTIVE To retrospectively analyze the medical charts of patients with pulmonary malformations submitted to surgical treatment and to investigate the clinical evolution prior to the definitive diagnosis. METHODS We analyzed the medical charts of patients with pulmonary malformations operated on at the São Paulo Hospital-Federal University of São Paulo/Paulista School of Medicine-from 1969 to 2004. Each medical chart was analyzed as to the following aspects: clinical profile; diagnosis; previous treatment; surgical treatment; and nosocomial complications. The inclusion criteria were having received a diagnosis of pulmonary malformation, having undergone pulmonary resection, and chart data being complete. RESULTS The analysis of the medical charts revealed that 60 patients diagnosed with pulmonary malformations-27 cases of bronchogenic cyst, 14 cases of congenital lobar emphysema, 10 cases of pulmonary sequestration, and 9 cases of cystic adenomatoid malformation-underwent surgery. Ages ranged from 4 days to 62 years (mean, 17.9 years). There was a predominance of males (55%). Ninety-two percent of the patients presented symptoms (mean duration: 15.37 months). Of the 60 patients undergoing surgery, 27 (45%) received preoperative home or hospital treatment with antibiotics. Regarding complications, we observed that morbidity was 23%, and mortality was 3.3%. Surgical times ranged from 1 to 8 h (mean, 3.2 h). CONCLUSIONS Misdiagnosis or delayed diagnosis of pulmonary malformations resulted in unnecessary treatments and hospitalizations, as well as in frequent, recurrent infectious complications. We believe that the definitive treatment is surgery, which is curative and has low morbidity and mortality rates.
Protein kinase C and P2Y12 take center stage in thrombin-mediated activation of mammalian target of rapamycin complex 1 in human platelets

Rapamycin, an inhibitor of mammalian target of rapamycin complex‐1 (mTORC1), reduces platelet spreading, thrombus stability, and clot retraction. Despite an important role of mTORC1 in platelet function, little is known about how it is regulated. The objective of this study was to determine the signaling pathways that regulate mTORC1 in human platelets.
Trimethoprim resistance in Escherichia coli isolates from a geriatric unit

The frequency of trimethoprim resistance among Escherichia coli isolates from urine samples collected at Turku City Hospital, Turku, Finland, remained at 40% during 1984 to 1988. The proportion of highly resistant (MIC, greater than or equal to 1,024 micrograms/ml) isolates increased, however, and most of these harbored the type I dihydrofolate reductase gene. Only a few isolates possessed type II or VII genes.
Post-hatching development of mitochondrial function, organ mass and metabolic rate in two ectotherms, the American alligator (Alligator mississippiensis) and the common snapping turtle (Chelydra serpentina)

ABSTRACT The ontogeny of endothermy in birds is associated with disproportionate growth of thermogenic organs and increased mitochondrial oxidative capacity. However, no similar study has been made of the development of these traits in ectotherms. For comparison, we therefore investigated the metabolism, growth and muscle mitochondrial function in hatchlings of a turtle and a crocodilian, two ectotherms that never develop endothermy. Metabolic rate did not increase substantially in either species by 30 days post-hatching. Yolk-free body mass and heart mass did not change through 30 days in alligators and heart mass was a constant proportion of body mass, even after 1 year. Yolk-free body mass and liver mass grew 36% and 27%, respectively, in turtles during the first 30 days post-hatch. The mass-specific oxidative phosphorylation capacity of mitochondria, assessed using permeabilized muscle fibers, increased by a non-significant 47% in alligator thigh and a non-significant 50% in turtle thigh over 30 days, but did not increase in the heart. This developmental trajectory of mitochondrial function is slower and shallower than that previously observed in ducks, which demonstrate a 90% increase in mass-specific oxidative phosphorylation capacity in thigh muscles over just a few days, a 60% increase in mass-specific oxidative phosphorylation capacity of the heart over a few days, and disproportionate growth of the heart and other organs. Our data thus support the hypothesis that these developmental changes in ducks represent mechanistic drivers for attaining endothermy. Summary: Unlike endothermic species, there is little change in skeletal and cardiac muscle mitochondrial function from the embryonic stage through the first year of life in ectothermic alligators and snapping turtles.
Neural Activity When People Solve Verbal Problems with Insight

People sometimes solve problems with a unique process called insight, accompanied by an “Aha! ” experience. It has long been unclear whether different cognitive and neural processes lead to insight versus noninsight solutions, or if solutions differ only in subsequent subjective feeling. Recent behavioral studies indicate distinct patterns of performance and suggest differential hemispheric involvement for insight and noninsight solutions. Subjects solved verbal problems, and after each correct solution indicated whether they solved with or without insight. We observed two objective neural correlates of insight. Functional magnetic resonance imaging (Experiment 1) revealed increased activity in the right hemisphere anterior superior temporal gyrus for insight relative to noninsight solutions. The same region was active during initial solving efforts. Scalp electroencephalogram recordings (Experiment 2) revealed a sudden burst of high-frequency (gamma-band) neural activity in the same area beginning 0.3 s prior to insight solutions. This right anterior temporal area is associated with making connections across distantly related information during comprehension. Although all problem solving relies on a largely shared cortical network, the sudden flash of insight occurs when solvers engage distinct neural and cognitive processes that allow them to see connections that previously eluded them.
Effects of ambient temperature on metabolic rate, respiratory quotient, and torpor in an arctic hibernator.

Arctic ground squirrels (Spermophilus parryii) overwinter in hibernaculum conditions that are substantially below freezing. During torpor, captive arctic ground squirrels displayed ambient temperature (T(a))-dependent patterns of core body temperature (T(b)), metabolic rate (TMR), and metabolic fuel use, as determined by respiratory quotient (RQ). At T(a) 0 to -16 degrees C, T(b) remained relatively constant, and TMR rose proportionally with the expanding gradient between T(b) and T(a), increasing >15-fold from a minimum of 0.0115 +/- 0.0012 ml O(2). g(-1). h(-1). At T(a) 0-20 degrees C, T(b) increased with T(a); however, TMR did not change significantly from T(b) 0 to 12 degrees C, indicating temperature-independent inhibition of metabolic rate. The overall change in TMR from T(b) 4 to 20 degrees equates to a Q(10) of 2.4, but within this range of T(b), Q(10) changed from 1.0 to 14.1. During steady-state torpor at T(a) 4 and 8 degrees C, RQ averaged 0.70 +/- 0.013, indicating exclusive lipid catabolism. At T(a) -16 and 20 degrees C, RQ increased significantly to >0.85, consistent with recruitment of nonlipid fuels. RQ was negatively correlated with maximum torpor bout length. For T(a) values <0 degrees C, this relationship supports the hypothesis that availability of nonlipid metabolic fuels limits torpor duration in hibernating mammals; for T(a) values >0 degrees C, hypotheses linked to body temperature are supported. Because anterior body temperatures differ from core, overall, the duration torpor can be extended in hibernating mammals may be dependent on brain temperature.
Drug Repositioning for Gynecologic Tumors: A New Therapeutic Strategy for Cancer

The goals of drug repositioning are to find a new pharmacological effect of a drug for which human safety and pharmacokinetics are established and to expand the therapeutic range of the drug to another disease. Such drug discovery can be performed at low cost and in the short term based on the results of previous clinical trials. New drugs for gynecologic tumors may be found by drug repositioning. For example, PPAR ligands may be effective against ovarian cancer, since PPAR activation eliminates COX-2 expression, arrests the cell cycle, and induces apoptosis. Metformin, an antidiabetic drug, is effective for endometrial cancer through inhibition of the PI3K-Akt-mTOR pathway by activating LKB1-AMPK and reduction of insulin and insulin-like growth factor-1 due to AMPK activation. COX-2 inhibitors for cervical cancer may also be examples of drug repositioning. PGE2 is induced in the arachidonate cascade by COX-2. PGE2 maintains high expression of COX-2 and induces angiogenic factors including VEGF and bFGF, causing carcinogenesis. COX-2 inhibitors suppress these actions and inhibit carcinogenesis. Combination therapy using drugs found by drug repositioning and current anticancer drugs may increase efficacy and reduce adverse drug reactions. Thus, drug repositioning may become a key approach for gynecologic cancer in drug discovery.
The Fine Structure of Brown Adipose Tissue in the Newborn Mouse and Rat

Interscapular fat from newborn rats and mice was fixed in buffered 1 per cent osmium tetroxide and thin sections of the methacrylate-embedded tissue were studied with the electron microscope. The findings have reaffirmed the epithelioid character of brown adipose tissue, and have provided additional information on the relation of its cells to each other and to the rich capillary bed. For the most part, the earlier description of the fine structure of brown adipose cells by Lever, has been confirmed, but our observations on the mitochondria and their relation to fat droplets have led us to different conclusions concerning the role of these organelles in lipogenesis. Mitochondria were often found to be very closely associated with lipide inclusions, but no actual communication between the two was observed and no evidence was found to support the hypothesis that mitochondria are transformed into lipide droplets. Large dense bodies which showed a highly ordered fine structure suggesting a crystalline protein were seen in the matrix of some mitochondria. The cytoplasm of the adipose cells contained fine granules that seemed to be of two kinds: particles of uniform size (∼150 A) and appreciable density that are believed to be ribonucleoprotein, and granules of lower density and more variable size that are tentatively interpreted as a form of glycogen. The Golgi complex of the adipose cells was small and the endoplasmic reticulum almost entirely absent. The significance of the poor development of these organelles is discussed in relation to current concepts of their function.
FlaiMapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data

MOTIVATION Recent discoveries show that most types of small non-coding RNAs (sncRNAs) such as miRNAs, snoRNAs and tRNAs get further processed into putatively active smaller RNA species. Their roles, genetic profiles and underlying processing mechanisms are only partially understood. To find their quantities and characteristics, a proper annotation is essential. Here, we present FlaiMapper, a method that extracts and annotates the locations of sncRNA-derived RNAs (sncdRNAs). These sncdRNAs are often detected in sequencing data and observed as fragments of their precursor sncRNA. Using small RNA-seq read alignments, FlaiMapper is able to annotate fragments primarily by peak detection on the start and end position densities followed by filtering and a reconstruction process. RESULTS To assess performance of FlaiMapper, we used independent publicly available small RNA-seq data. We were able to detect fragments representing putative sncdRNAs from nearly all types of sncRNA, including 97.8% of the annotated miRNAs in miRBase that have supporting reads. Comparison of FlaiMapper-predicted boundaries of miRNAs with miRBase entries demonstrated that 89% of the start and 54% of the end positions are identical. Additional benchmarking showed that FlaiMapper is superior in performance compared with existing software. Further analysis indicated a variety of characteristics in the fragments, including sequence motifs and relations with RNA interacting factors. These characteristics set a good basis for further research on sncdRNAs. AVAILABILITY AND IMPLEMENTATION The platform independent GPL licensed Python 2.7 code is available at: https://github.com/yhoogstrate/flaimapper.
On three-dimensional quasiperiodic Floquet instabilities of two-dimensional bluff body wakes

Previous studies dealing with Floquet secondary stability analysis of the wakes of circular and square cross-section cylinders have shown that there are two synchronous instability modes, with long (mode A) and short (mode B) spanwise wavelengths. At intermediate wavelengths another mode arises, which reaches criticality at Reynolds numbers higher than modes A or B. Here we concentrate on these intermediate-wave number modes for the wakes of circular and square cylinders. It is found that in both cases these modes possess complex-conjugate pair Floquet multipliers, and can be combined to produce either standing or traveling waves. Both these states are quasiperiodic.
Stochastic k-Server: How Should Uber Work?

In this paper, we study a stochastic variant of the celebrated k-server problem. In the k-server problem, we are required to minimize the total movement of k servers that are serving an online sequence of t requests in a metric. In the stochastic setting we are given t independent distributions in advance, and at every time step i a request is drawn from Pi. Designing the optimal online algorithm in such setting is NP-hard, therefore the emphasis of our work is on designing an approximately optimal online algorithm. We first show a structural characterization for a certain class of non-adaptive online algorithms. We prove that in general metrics, the best of such algorithms has a cost of no worse than three times that of the optimal online algorithm. Next, we present an integer program that finds the optimal algorithm of this class for any arbitrary metric. Finally, by rounding the solution of the linear relaxation of this program, we present an online algorithm for the stochastic k-server problem with the approximation factor of 3 in the line and circle metrics and O(log n) in a general metric of size n. Moreover, we define the Uber problem, in which each demand consists of two endpoints, a source and a destination. We show that given an a-approximation algorithm for the k-server problem, we can obtain an (a+2)-approximation algorithm for the Uber problem. Motivated by the fact that demands are usually highly correlated with the time we study the stochastic Uber problem. Furthermore, we extend our results to the correlated setting where the probability of a request arriving at a certain point depends not only on the time step but also on the previously arrived requests.