Miracle-dz/UniFAR-FTUs huggingface dataset:
Metals and secondary metabolites in saxicolous lichen communities on ultramafic and non-ultramafic rocks of the Western Italian Alps

There is a long history of studies on lichens found in ultramafic habitats, but comparisons between lichen communities on different ultramafic lithologies are scant, and potential metabolic adaptations to the multiple edaphic stresses of ultramafic substrates have been widely neglected. The present work is the first to characterise differences in the abundance and structure of saxicolous lichen communities on different ultramafic lithologies (dunite, lherzolite, and serpentinite), analysed in two areas of the Western Alps (NW Italy). Differences between communities on various ultramafic lithologies were observed, including differences between a mafic control (Mg-Al metagabbro); however, factors other than the substrate were observed to drive more remarkable differences between lichen communities on ultramafics of alpine and pre-alpine areas. XRF analyses demonstrated that the mineral composition of different lithologies is reflected by metal contents in crustose lichens, with weathering processes accounting for relative shifts in elemental abundances between rocks and thalli. A thin layer cromatography screening of lichen secondary metabolites (LSMs), which are thought to regulate metal and pH homeostasis in thalli, revealed lithological vicariance among dominant lichen species with different LSM patterns and intraspecific variability in LSM production associated with differences in lithology and location. In particular, the presence or absence of norstictic acid in species or lineages/individuals on the different lithologies, in relationship to concentrations of Fe, Mg, and Ni in lichen thalli, was recognised as a metabolic adaptation to metal stress. Pull-up tests revealed that physical factors such as a differential surface disaggregation may contribute more towards differences observed in lichen abundance on the different lithologies investigated.
Implications of current therapeutic restrictions for primaquine and tafenoquine in the radical cure of vivax malaria

Background The 8-aminoquinoline antimalarials, the only drugs which prevent relapse of vivax and ovale malaria (radical cure), cause dose-dependent oxidant haemolysis in individuals with glucose-6-phosphate dehydrogenase (G6PD) deficiency. Patients with <30% and <70% of normal G6PD activity are not given standard regimens of primaquine and tafenoquine, respectively. Both drugs are currently considered contraindicated in pregnant and lactating women. Methods Quantitative G6PD enzyme activity data from 5198 individuals were used to estimate the proportions of heterozygous females who would be ineligible for treatment at the 30% and 70% activity thresholds, and the relationship with the severity of the deficiency. This was used to construct a simple model relating allele frequency in males to the potential population coverage of tafenoquine and primaquine under current prescribing restrictions. Findings Independent of G6PD deficiency, the current pregnancy and lactation restrictions will exclude ~13% of females from radical cure treatment. This could be reduced to ~4% if 8-aminoquinolines can be prescribed to women breast-feeding infants older than 1 month. At a 30% activity threshold, approximately 8–19% of G6PD heterozygous women are ineligible for primaquine treatment; at a 70% threshold, 50–70% of heterozygous women and approximately 5% of G6PD wild type individuals are ineligible for tafenoquine treatment. Thus, overall in areas where the G6PDd allele frequency is >10% more than 15% of men and more than 25% of women would be unable to receive tafenoquine. In vivax malaria infected patients these proportions will be lowered by any protective effect against P. vivax conferred by G6PD deficiency. Conclusion If tafenoquine is deployed for radical cure, primaquine will still be needed to obtain high population coverage. Better radical cure antimalarial regimens are needed.
Aquaporins in Brain: Distribution, Physiology, and Pathophysiology

Water homeostasis in the brain is of central physiologic and clinical importance. Neuronal activity and ion water homeostasis are inextricably coupled. For example, the clearance of K+ from areas of high neuronal activity is associated with a concomitant water flux. Furthermore, cerebral edema, a final common pathway of numerous neurologic diseases, including stroke, may rapidly become life threatening because of the rigid encasement of the brain. A water channel family, the aquaporins, facilitates water flux through the plasma membrane of many cell types. In rodent brain, several recent studies have demonstrated the presence of different types of aquaporins. Aquaporin 1 (AQP1) was detected on epithelial cells in the choroid plexus whereas AQP4, AQP5 and AQP9 were localized on astrocytes and ependymal cells. In rodent brain, AQP4 is present on astrocytic end-feet in contact with brain vessels, and AQP9 is found on astrocytic processes and cell bodies. In basal physiologic conditions, AQP4 and AQP9 appear to be implicated in brain homeostasis and in central plasma osmolarity regulation. Aquaporin 4 may also play a role in pathophysiologic conditions, as shown by the reduced edema formation observed after water intoxication and focal cerebral ischemia in AQP4-knockout mice. Furthermore, pathophysiologic conditions may modulate AQP4 and AQP9 expression. For example, AQP4 and AQP9 were shown to be upregulated after ischemia or after traumatic injuries. Taken together, these recent reports suggest that water homeostasis in the brain is maintained by regulatory processes that, by control of aquaporin expression and distribution, induce and organize water movements. Facilitation of these movements may contribute to the development of edema formation after acute cerebral insults such as ischemia or traumatic injury.
Hanging Out With the Right Crowd: Peer Influence on Risk‐Taking Behavior in Adolescence

Peer influence plays a key role in the increase of risk-taking behavior during adolescence. However, its underlying processes are not fully understood. This study examined the effects of social norms, conveyed through peer advice, on risk-taking behavior in 15- to 17-year-old adolescents (N = 76). Participants played a card-guessing task alone and with online peer advice. Results showed that risk-taking increased in the presence of peers. The results further showed that adolescents took into account the uncertainty associated with gambles, as well as the social norms conveyed by peers. Our findings suggest that peers are most influential in uncertain situations and demonstrate the value of a social norms approach in examining the processes underlying peer effects.
Sharing and giving across adolescence: an experimental study examining the development of prosocial behavior

In this study we use economic exchange games to examine the development of prosocial behavior in the form of sharing and giving in social interactions with peers across adolescence. Participants from four age groups (9-, 12-, 15-, and 18-year-olds, total N = 119) played three types of distribution games and the Trust game with four different interaction partners: friends, antagonists, neutral classmates, and anonymous peers. Nine- and 12-year-olds showed similar levels of prosocial behavior to all interaction partners, whereas older adolescents showed increasing differentiation in prosocial behavior depending on the relation with peers, with most prosocial behavior toward friends. The age related increase in non-costly prosocial behavior toward friends was mediated by self-reported perspective-taking skills. Current findings extend existing evidence on the developmental patterns of fairness considerations from childhood into late adolescence. Together, we show that adolescents are increasingly better at incorporating social context into decision-making. Our findings further highlight the role of friendships as a significant social context for the development of prosocial behavior in early adolescence.
Deuk Laser Disc Repair® is a safe and effective treatment for symptomatic cervical disc disease

Background: Deuk Laser Disc Repair® is a new full-endoscopic surgical procedure to repair symptomatic cervical disc disease. Methods: A prospective cohort of 66 consecutive patients underwent cervical Deuk Laser Disc Repair® for one (n = 21) or two adjacent (n = 45) symptomatic levels of cervical disc disease and were evaluated postoperatively for resolution of headache, neck pain, arm pain, and radicular symptoms. All patients were candidates for anterior cervical discectomy and fusion (ACDF) or arthroplasty. The Mann–Whitney Wilcoxon test was used to calculate P values. Results: All patients (n = 66) had significant improvement in preoperative symptoms with an average symptom resolution of 94.6%. Fifty percent (n = 33) had 100% resolution of all preoperative cervicogenic symptoms. Only 4.5% (n = 3) had less than 80% resolution of preoperative symptoms. Visual analog scale (VAS) significantly improved from 8.7 preoperatively to 0.5 postoperatively (P < 0.001) for the cohort. Average operative and recovery times were 57 and 52 minutes, respectively. There were no perioperative complications. Recurrent disc herniation occurred in one patient (1.5%). Average postoperative follow-up was 94 days and no significant intergroup difference in outcomes was observed (P = 0.111) in patients with <90 days (n = 52) or >90 days (n = 14, mean 319 days) follow-up. No significant difference in outcomes was observed (P = 0.774) for patients undergoing one or two level Deuk Laser Disc Repair®. Patients diagnosed with postoperative cervical facet syndrome did significantly worse (P < 0.001). Conclusion: Deuk Laser Disc Repair® is a safe and effective alternative to ACDF or arthroplasty for the treatment of one or two adjacent symptomatic cervical disc herniations with an overall success rate of 94.6%.
Draft genome sequence of Camellia sinensis var. sinensis provides insights into the evolution of the tea genome and tea quality

Significance A high-quality genome assembly of Camellia sinensis var. sinensis facilitates genomic, transcriptomic, and metabolomic analyses of the quality traits that make tea one of the world’s most-consumed beverages. The specific gene family members critical for biosynthesis of key tea metabolites, monomeric galloylated catechins and theanine, are indicated and found to have evolved specifically for these functions in the tea plant lineage. Two whole-genome duplications, critical to gene family evolution for these two metabolites, are identified and dated, but are shown to account for less amplification than subsequent paralogous duplications. These studies lay the foundation for future research to understand and utilize the genes that determine tea quality and its diversity within tea germplasm. Tea, one of the world’s most important beverage crops, provides numerous secondary metabolites that account for its rich taste and health benefits. Here we present a high-quality sequence of the genome of tea, Camellia sinensis var. sinensis (CSS), using both Illumina and PacBio sequencing technologies. At least 64% of the 3.1-Gb genome assembly consists of repetitive sequences, and the rest yields 33,932 high-confidence predictions of encoded proteins. Divergence between two major lineages, CSS and Camellia sinensis var. assamica (CSA), is calculated to ∼0.38 to 1.54 million years ago (Mya). Analysis of genic collinearity reveals that the tea genome is the product of two rounds of whole-genome duplications (WGDs) that occurred ∼30 to 40 and ∼90 to 100 Mya. We provide evidence that these WGD events, and subsequent paralogous duplications, had major impacts on the copy numbers of secondary metabolite genes, particularly genes critical to producing three key quality compounds: catechins, theanine, and caffeine. Analyses of transcriptome and phytochemistry data show that amplification and transcriptional divergence of genes encoding a large acyltransferase family and leucoanthocyanidin reductases are associated with the characteristic young leaf accumulation of monomeric galloylated catechins in tea, while functional divergence of a single member of the glutamine synthetase gene family yielded theanine synthetase. This genome sequence will facilitate understanding of tea genome evolution and tea metabolite pathways, and will promote germplasm utilization for breeding improved tea varieties.
Biosorption of Heavy Metals from Aqueous Solution by Bacteria Isolated from Contaminated Soil

This study was carried out to analyze the heavy metals biosorption potential of bacteria isolated from soil contaminated with electroplating industrial effluents. Bacterial isolates were screened for their multi‐metal biosorption potential against copper, nickel, lead, and chromium. Bacterial isolate CU4A showed the maximum uptake of copper, nickel, lead, and chromium in aqueous solution, with a biosorption efficiency of 87.16 %, 79.62%, 84.92%, and 68.12%, respectively. The bacterial strain CU4A was identified as Bacillus cereus, following 16S rRNA gene sequence analysis. The surface chemical functional groups of bacterial biomass were identified by Fourier transform infrared (FTIR) spectroscopy as hydroxyl, carboxyl, amine, and halide, which may be involved in the biosorption of heavy metals. Analysis with scanning electron microscopy (SEM) and energy dispersive spectroscopy (EDS) confirmed the adsorption of metals on the bacterial cell mass. The results of this study are significant and could be further investigated for the removal of heavy metals from contaminated environments.
Polyunsaturated fatty acids in the pathogenesis and treatment of multiple sclerosis

Epidemiological, biochemical, animal model and clinical trial data described in this overview strongly suggest that polyunsaturated fatty acids, particularly n-6 fatty acids, have a role in the pathogenesis and treatment of multiple sclerosis (MS). Data presented provides further evidence for a disturbance in n-6 fatty acid metabolism in MS. Disturbance of n-6 fatty acid metabolism and dysregulation of cytokines are shown to be linked and a “proof of concept clinical trial” further supports such a hypothesis. In a randomised double-blind, placebo controlled trial of a high dose and low dose selected GLA (18 : 3n-6)-rich oil and placebo control, the high dose had a marked clinical effect in relapsing-remitting MS, significantly decreasing the relapse rate and the progression of disease. Laboratory findings paralleled clinical changes in the placebo group in that production of mononuclear cell pro-inflammatory cytokines (TNF-α, IL-1β) was increased and anti-inflammatory TGF-β markedly decreased with loss of membrane n-6 fatty acids linoleic (18 : 2n-6) and arachidonic acids (20 : 4n-6). In contrast there were no such changes in the high dose group. The improvement in disability (Expanded Disability Status Scale) in the high dose suggests there maybe a beneficial effect on neuronal lipids and neural function in MS. Thus disturbed n-6 fatty acid metabolism in MS gives rise to loss of membrane long chain n-6 fatty acids and loss of the anti-inflammatory regulatory cytokine TGF-β, particularly during the relapse phase, as well as loss of these important neural fatty acids for CNS structure and function and consequent long term neurological deficit in MS.
INITIALIZED JACOBI OPTIMIZATION IN INDEPENDENT COMPONENT ANALYSIS

The authors propose a new solution to the minimization of marginal entropies (ME) in multidimensional independent component analysis (ICA). Starting from the ’Jacobi optimization’ (JO), we focus on a novel method based on initialization. In this method, we first compute the moment matrix for the prewhitened inputs. Then, the moments at each iteration of this Initialized Jacobi Optimization (IJO) are computed as rotations of this matrix. We include a computational comparison between the JO and IJO to design the Optimized Jacobi Optimization (OJO). This new method is available for a wide set of fourth order based contrasts. Experiments have been included to show that this algorithm have an excellent performance at a low computational cost and memory requirements in comparison to other well-known algorithms.
A topology morphing multi-element resonant converter with wide voltage gain range

A topology morphing multi-element resonant converter (MRC) is proposed in this paper. The converter introduces two auxiliary switches and is able to exchange its equivalent topology flexibly. Consequently, widely adjustable voltage gain from 0 to 8 is acquired within a small operating frequency range, which contributes to highly efficient conversion as well. The resonant parameters of the converter are also designed and tested by a prototype. The experimental results demonstrate that the converter harvests relatively high efficiencies among the entire input voltage variations from 25V to 300V, and the highest efficiency point has reached 98.1%.
Commuting quantum circuits and complexity of Ising partition functions

Instantaneous quantum polynomial-time (IQP) computation is a class of quantum computation consisting only of commuting two-qubit gates and is not universal. Nevertheless, it has been shown that if there is a classical algorithm that can simulate IQP efficiently, the polynomial hierarchy collapses to the third level, which is highly implausible. However, the origin of the classical intractability is still less understood. Here we establish a relationship between IQP and computational complexity of calculating the imaginary-valued partition functions of Ising models. We apply the established relationship in two opposite directions. One direction is to find subclasses of IQP that are classically efficiently simulatable by using exact solvability of certain types of Ising models. Another direction is applying quantum computational complexity of IQP to investigate (im)possibility of efficient classical approximations of Ising partition functions with imaginary coupling constants. Specifically, we show that a multiplicative approximation of Ising partition functions is #P-hard for almost all imaginary coupling constants even on planar lattices of a bounded degree.
Sediment yields from unit‐source semiarid watersheds at Walnut Gulch

This study reports sediment yields from seven small (0.18–5.42 ha) watersheds in Southern Arizona measured from 1995 to 2005. Sediment concentrations and total event sediment yields were related to storm‐runoff characteristics, and statistical relationships were developed to estimate sediment yields for events with missing data. Precipitation ranged from 263 to 298 mm yr−1, runoff ranged from 8.2 to 26.4 mm yr−1, and sediment yields ranged from 0.07 to 5.7 t ha−1 yr−1, with an areal average of 2.2 t ha−1 yr−1. For six of the seven watersheds, between 6 and 10 events produced 50% of the total sediment yields over the 11‐year period. On the seventh watershed, two storms produced 66% of the sediment because of differences in the geomorphology and vegetation characteristics of that area. Differences between sediment yields from all watersheds were attributable to instrumentation, watershed morphology, degree of channel incision, and vegetation.
Hydrologic Response to Mechanical Shredding in a Juniper Woodland

Abstract We investigated soil compaction and hydrologic responses from mechanically shredding Utah juniper (Juniperus ostesperma [Torr.] Little) to control fuels in a sagebrush/bunchgrass plant community (Artemisia nova A. Nelson, Artemisia tridentata Nutt. subsp. wyomingensis Beetle & Young/Pseudoroegneria spicata [Pursh] A. Löve, Poa secunda J. Presl) on a gravelly loam soil with a 15% slope in the Onaqui Mountains of Utah. Rain simulations were applied on 0.5-m2 runoff plots at 64 mm · h−1 (dry run: soil initially dry) and 102 mm · h−1 (wet run: soil initially wet). Runoff and sediment were collected from runoff plots placed in five blocks, each containing four microsites (juniper mound, shrub mound, vegetation-free or bare interspace, and grass interspace) with undisturbed or tracked treatments for each microsite type and a residue-covered treatment for grass and bare interspace microsites. Soil penetration resistance was measured at the hill slope scale, and canopy and ground cover were measured at the hill slope and runoff plot scale. Although shredding trees at a density of 453 trees · ha−1 reduced perennial foliar cover by 20.5%, shredded tree residue covered 40% of the ground surface and reduced non–foliar-covered bare ground and rock by 17%. Tire tracks from the shredding operation covered 15% of the hill slope and increased penetration resistance. For the wet run, infiltration rates of grass interspaces were significantly decreased (39.8 vs. 66.1 mm · h−1) by tire tracks, but infiltration rates on juniper mounds and bare interspaces were unchanged. Bare interspace plots covered with residue had significantly higher infiltration rates (81.9 vs. 26.7 mm · h−1 ) and lower sediment yields (38.6 vs. 313 g · m−2 ) than those without residue. Because hydrologic responses to treatments are site- and scale-dependent, determination of shredding effects on other sites and at hill slope or larger scales will best guide management actions.
Occupational PAH Exposures during Prescribed Pile

Wildland firefighters are exposed to particulate matter and gases containing polycyclic aromatic hydrocarbons (PAHs), many of which are known carcinogens. Our objective was to evaluate the extent of firefighter exposure to particulate and PAHs during prescribed pile burns of mainly ponderosa pine slash and determine whether these exposures were correlated with changes in urinary 1-hydroxypyrene (1-HP), a PAH metabolite. Personal and area sampling for particulate and PAH exposures were conducted on the White Mountain Apache Tribe reservation, working with 21 Bureau of Indian Affairs/Fort Apache Agency wildland firefighters during the fall of 2006. Urine samples were collected preand post-exposure and pulmonary function was measured. Personal PAH exposures were detectable for only 3 of 16 PAHs analyzed: naphthalene, phenanthrene, and fluorene, all of which were identified only in vaporphase samples. Condensed-phase PAHs were detected in PM2.5 area samples (20 of 21 PAHs analyzed were detected, all but naphthalene) at concentrations below 1 mg m. The total PAH/PM2.5 mass fractions were roughly a factor of two higher during smoldering (1.06 6 0.15) than ignition (0.55 6 0.04 mg mg). There were no significant changes in urinary 1-HP or pulmonary function following exposure to pile burning. In summary, PAH exposures were low in pile burns, and urinary testing for a PAH metabolite failed to show a significant difference between baseline and post-exposure measurements.