Miracle-dz/UniFAR-FTUs huggingface dataset:
Crack propagation and coalescence due to dual non-penetrating surface flaws and their effect on the strength of rock-like material

Non-penetrating surface flaws play a key role in the fracture process of rock-like material, and could cause localized collapse and even failure of the materials. Until now, the mechanism and the effect of surface crack propagation have remained unclear. In this paper, compression tests on gypsum (a soft rock material) are conducted to investigate crack propagation and coalescence due to non-penetrating surface flaws and their effect on the material strength. Specimens are tested under dual pre-existing surface flaws with various combinations of depth and spacing. The results show that when the pre-existing flaws are non-penetrating, the d/t ratio (flaw depth ratio, d is the pre-existing flaw cutting depth and t is the specimen thickness) and the spacing (the distance between the two flaw internal tips) have a strong influence on surface crack patterns and specimen strength. Few cracks emanate from the pre-existing flaws when the flaw depth ratio is equal to 1/3, and more cracks occur with the increase of the flaw depth ratio. When the preexisting flaw penetrates completely through the specimen, the spacing has a small effect on the specimen strength. A larger flaw depth ratio could advance the occurrence of the peak load (PL) and result in a smaller specimen residual strength. The failure process of the specimen is divided into several stages featured by a stepped decline of the load value after PL, which is closely related to the initiation and propagation of secondary cracks. In addition, the spalling (failure of a portion of the surface caused by coalescence of cracks) can be regarded as indicating the failure of the specimen, and two possible types of spalling formation are briefly discussed.
Collective Behaviors of Mobile Robots Beyond the Nearest Neighbor Rules With Switching Topology

This paper is concerned with the collective behaviors of robots beyond the nearest neighbor rules, i.e., dispersion and flocking, when robots interact with others by applying an acute angle test (AAT)-based interaction rule. Different from a conventional nearest neighbor rule or its variations, the AAT-based interaction rule allows interactions with some far-neighbors and excludes unnecessary nearest neighbors. The resulting dispersion and flocking hold the advantages of scalability, connectivity, robustness, and effective area coverage. For the dispersion, a spring-like controller is proposed to achieve collision-free coordination. With switching topology, a new fixed-time consensus-based energy function is developed to guarantee the system stability. An upper bound of settling time for energy consensus is obtained, and a uniform time interval is accordingly set so that energy distribution is conducted in a fair manner. For the flocking, based on a class of generalized potential functions taking nonsmooth switching into account, a new controller is proposed to ensure that the same velocity for all robots is eventually reached. A co-optimizing problem is further investigated to accomplish additional tasks, such as enhancing communication performance, while maintaining the collective behaviors of mobile robots. Simulation results are presented to show the effectiveness of the theoretical results.
Summation of formal solutions of a class of linear difference equations

We consider difference equations y(s+1) = A(s)y(s), where A(s) is an n x n-matrix meromorphic in a neighborhood of infinity with det A(s) not equal 0. In general, the formal fundamental solutions of this equation involve gamma-functions which give rise to the critical variable s log s and a level 1(+). We show that, under a mild condition, formal fundamental matrices of the equation can be summed uniquely to analytic fundamental matrices represented asymptotically by the formal fundamental solution in appropriate domains. The method of proof is analogous to a method used to prove multi-summability of formal solutions of ODE's. Starting from analytic lifts of the formal fundamental matrix in half planes, we construct a sequence of increasingly precise quasi-functions, each of which is determined uniquely by its predecessor.
Probabilistic risk model to assess the potential for resistance selection following the use of anti-microbial medicated feed in pigs

ABSTRACT The cross-contamination of non-medicated feed with residues of anti-microbials (AM) causes a public and animal health concern associated with the potential for selection and dissemination of resistance. To analyse the associated risks, a probabilistic model was built using @Risk® (Palisade Corporation®) to show the potential extent of the effect of cross-contaminated pig feed on resistance selection. The results of the model include estimations of the proportion of pigs per production stage with residues of doxycycline, chlortetracycline, sulfadiazine and trimethoprim in their intestinal contents, as a result of exposure to cross-contaminated feed with different carry-over levels, in Belgium. By using a semi-quantitative approach, these estimations were combined with experimental data on AM concentrations associated with potential for resistance-selection pressure. Based on this model, it is estimated that 7.76% (min = 1.67; max = 36.94) of sows, 4.23% (min = 1.01%; max = 18.78%) of piglets and 2.8% (min = 0.51%; max = 14.9%) of fatteners in Belgium have residues of doxycycline in their intestinal tract due to consumption of feed with at least 1% carry-over. These values were estimated to be almost triple for sulfadiazine, but substantially lower for chlortetracycline and trimethoprim. Doxycycline concentrations as low as 1 mg/L (corresponding to consumed feed with at least 1% carry-over) can select for resistant porcine commensal Escherichia coli in vitro and in vivo. Conclusions on this risk could not be drawn for other AM at this stage, due to the lack of data on concentrations associated with resistance development. However, since the possibility of resistance mechanisms (e.g. co-selection) occurring cannot be excluded, the results of this model highlight that the use of AM medicated feed should be minimised where possible. In case of medicated feed production, good practice should be followed thoroughly at all levels of production, distribution, storage and administration, with a special focus on the feed distributed to piglets and sows.
The Knowledge of Good and Evil : Multilingual Ideology Classification with PARAFAC 2 and Machine Learning

We explore the problem of automated classification of multilingual documents by ideology; that is, given only the text written by an author and without any other document metadata (such as language, topic or author information), whether machine learning techniques can be applied to draw conclusions about the types of belief the author holds. For training data, we use a combination of documents collected from the world wide web (WWW) by a web spider, together with hand-picked ‘ideological’ documents such as the writings of Lenin and Hitler. A variety of languages are represented in this training data. The documents are projected into a single cross-language semantic space defined by the application of PARAFAC2 to a multi-parallel aligned corpus and represented as 96-dimensional vectors. We find that standard machine learning techniques can be used to distinguish the ‘ideological’ documents from among the general web content with a high rate of accuracy (higher than has been reported for sentiment analysis problems), but the accuracy is slightly lower in distinguishing between ideologies. We conclude by discussing the factors that may facilitate or impede automated ideological analysis of the type we envisage here.
Revegetation of Medusahead-Invaded Sagebrush Steppe

Abstract Medusahead (Taeniatherum caput-medusae [L.] Nevski) is an exotic annual grass invading western rangelands. Invasion by medusahead is problematic because it decreases livestock forage production, degrades wildlife habitat, reduces biodiversity, and increases fire frequency. Revegetation of medusahead-invaded sagebrush steppe is needed to increase ecosystem and economic productivity. Most efforts to revegetate medusahead-infested plant communities are unsuccessful because perennial bunchgrasses rarely establish after medusahead control. The effects of prescribed burning (spring or fall), fall imazapic application, and their combinations were evaluated for medusahead control and the establishment of seeded large perennial bunchgrasses. One growing season after treatments were applied, desert wheatgrass (Agropyron desertorum [Fisch. ex Link] Schult.) and squirreltail (Elymus elymoides [Raf.] Swezey) were drill seeded into treatment plots, except for the control treatment. Vegetation characteristics were measured for 2 yr postseeding (second and third year post-treatment). Medusahead was best controlled when prescribed burned and then treated with imazapic (P < 0.05). These treatments also had greater large perennial bunchgrass cover and density compared to other treatments (P < 0.05). The prescribed burned followed by imazapic application had greater than 10- and 8-fold more perennial bunchgrass cover and density than the control treatment, respectively. Prescribed burning, regardless of season, was not effective at controlling medusahead or promoting establishment of perennial bunchgrasses. The results of this study question the long-term effectiveness of using imazapic in revegetation efforts of medusahead-infested sagebrush steppe without first prescribed burning the infestation. Effective control of medusahead appears to be needed for establishment of seeded perennial bunchgrasses. The results of this study demonstrate that seeding desert wheatgrass and squirreltail can successfully revegetate rangeland infested with medusahead when medusahead has been controlled with prescribed fire followed by fall application of imazapic.
Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the New Caledonian Coral Lagoon

Nitrogen (N2) fixation is a major source of nitrogen that supports primary production in the vast oligotrophic areas of the world’s oceans. The Western Tropical South Pacific has recently been identified as a hotspot for N2 fixation. In the Noumea lagoon (New Caledonia), high abundances of the unicellular N2-fixing cyanobacteria group A (UCYN-A), coupled with daytime N2 fixation rates associated with the <10 μm size fraction, suggest UCYN-A may be an important diazotroph (N2-fixer) in this region. However, little is known about the seasonal variability and diversity of UCYN-A there. To assess this, surface waters from a 12 km transect from the mouth of the Dumbea River to the Dumbea Pass were sampled monthly between July 2012 and March 2014. UCYN-A abundances for two of the defined sublineages, UCYN-A1 and UCYN-A2, were quantified using qPCR targeting the nifH gene, and the nifH-based diversity of UCYN-A was characterized by identifying oligotypes, alternative taxonomic units defined by nucleotide positions with high variability. UCYN-A abundances were dominated by the UCYN-A1 sublineage, peaked in September and October and could be predicted by a suite of nine environmental parameters. At the sublineage level, UCYN-A1 abundances could be predicted based on lower temperatures (<23°C), nitrate concentrations, precipitation, wind speed, while UCYN-A2 abundances could be predicted based on silica, and chlorophyll a concentrations, wind direction, precipitation, and wind speed. Using UCYN-A nifH oligotyping, similar environmental variables explained the relative abundances of sublineages and their associated oligotypes, with the notable exception of the UCYN-A2 oligotype (oligo43) which had relative abundance patterns distinct from the dominant UCYN-A2 oligotype (oligo3). The results support an emerging pattern that UCYN-A is comprised of a diverse group of strains, with sublineages that may have different ecological niches. By identifying environmental factors that influence the composition and abundance of UCYN-A sublineages, this study helps to explain global UCYN-A abundance patterns, and is important for understanding the significance of N2 fixation at local and global scales.
Rapid Generation of Barley Mutant Lines With High Nitrogen Uptake Efficiency by Microspore Mutagenesis and Field Screening

In vitro mutagenesis via isolated microspore culture provides an efficient way to produce numerous double haploid (DH) lines with mutation introduction and homozygosity stabilization, which can be used for screening directly. In this study, 356 DH lines were produced from the malt barley (Hordeum vulgare L.) cultivar Hua-30 via microspore mutagenic treatment with ethyl methane sulfonate or pingyangmycin during in vitro culture. The lines were subjected to field screening under high nitrogen (HN) and low nitrogen (LN) conditions, and the number of productive tillers was used as the main screening index. Five mutant lines (A1-28, A1-84, A1-226, A16-11, and A9-29) with high numbers of productive tillers were obtained over three consecutive years of screening. In the fifth year, components related to N-use efficiency (NUE), including N accumulation, utilization, and translocation, were characterized for these lines based on N uptake efficiency (NUpE), N utilization efficiency (NUtE), and N translocation efficiency (NTE). The results show that the NUpE of four mutant lines (A1-84, A1-226, A9-29, and A16-11) improved significantly under HN, whereas that of two lines (A1-84 and A9-29) improved under LN. As a result, their NUE improved greatly. No improvement in NUtE was observed in any of the five mutant lines. A1-84 and A9-29 were selected as an enhanced genotype in N uptake, and A1-28 showed improved NTE at the grain-filling stage. Our results imply that high-NUpE mutants can be produced through microspore mutagenesis and field screening, and that improvement of NUE in barley depends on enhancement of N uptake.
Correlations of first and second heart sounds with age, sex, and body mass index

Although auscultation of heart sounds is a commonly used diagnostic tool in preliminary investigation of heart function, no description of normal amplitudes of the two major heart sounds, the first (S1) and second (S2) heart sounds, and their relation to age, sex, and body mass index (BMI), exist. Heart sound recordings from 739 healthy subjects, from the "Dan-NICAD" study, recorded with Acarix CADScor System at the left fourth inter-costal space (IC4), were investigated. The S1 and S2 sounds were isolated using an automated segmentation algorithm and their absolute amplitudes, |S1| and |S2|, were tested for correlation with age, sex, and BMI. Mean S11 was 95.4 (±6.2) dB for men and 93.7 (±6.8) dB for women, which showed a significant difference (p<0.05). Mean |S2| was 91.9 (±5.1) dB for men and 91.8 (±5.6) dB for women, showing no significant difference (p=0.82). |S1| and |S2| were only weakly correlated with age (r=−0.084 and r=−0.069 respectively). Both |S1| and |S2| were well correlated with BMI (r=−0.42 and r=−0.50 respectively). The correlation between BMI and the amplitude of heart sounds is an important baseline knowledge when developing algorithms for automated analysis of heart sounds.
Differential effect of p38 and MK2 kinase inhibitors on the inflammatory and toxicity biomarkers in vitro

Background: Many inflammatory responses including chemotaxis, production of nitric oxide, and modulation of pro-inflammatory cytokines in immunological cells are mediated by p38MAPK. Due to its pivotal role, p38MAPK has been extensively explored as a molecular target for inhibition of chronic inflammation; however, it has not been successful so far due to serious toxicity issues. Among several downstream substrates of p38, mitogen-activated protein kinase-activated protein kinase 2 (MK2) has been reported to be a direct and essential downstream component in regulation of innate immune and inflammatory responses. Thus, in this study, we aimed to understand relative molecular differences between p38 and MK2 kinase inhibition in terms of a comparative anti-inflammatory potential along with molecular regulation of toxicity biomarkers such as Phospho c-Jun N-Terminal Kinase (pJNK), caspase-3, and hepatic enzyme levels in relevant human cells in vitro. Results: Both p38 and MK2 inhibitors attenuated lipopolysaccharide-induced pro-inflammatory biomarkers expression. In addition, both these kinase inhibitors inhibited release of Th1 and Th17 cytokines in phytohemagglutinin-induced cells with MK2 inhibitor showing a better potency for inhibition of Th1 cytokine release, interferon-γ. In the mechanistic differentiation studies, p38 inhibitors displayed an increase in pJNK and caspase-3 activity in U937 cells and elevation in aspartate transaminase enzyme in HepG2 cells, whereas MK2 inhibitor did not show such adverse toxic effects. Conclusion: Taken together, inhibition of MK2 kinase can be a relatively preferred strategy as an anti-inflammatory therapy over direct inhibition of p38 kinase in p38MAPK pathway.
Delusional Themes Across Affective and Non-Affective Psychoses

The current debate about the diagnostic significance of delusion revolves around two positions. The neurocognitive position conceives delusion as a non-specific, though polymorphic, symptom. The psychopathological position views features of delusion such as content and structure as having meaningful connections with diagnostic entities. This study aims at contributing to this debate by examining the association between delusional themes and diagnosis in a sample of 830 adult psychotic patients. All diagnoses were made by experienced psychiatrists according to DSM-IV or ICD-10 criteria, and in 348 patients were established with the SCID-I. All patients were administered the Brief Psychiatric Rating Scale (BPRS). In each patient, the presence of somatic delusions and delusions of guilt, grandiosity, and persecution was determined by examining the scores on relevant BPRS items. Delusions of guilt were almost pathognomonic for a psychotic depressive condition (psychotic major depression 40%; psychotic bipolar depression 30%; depressed schizoaffective disorder 8%; bipolar and schizoaffective mixed states 6 and 7%, respectively). Only 1% of patients with schizophrenia and no patient with delusional disorder or bipolar or schizoaffective manic state showed such delusions. The difference between unipolar and bipolar depression and the other diagnostic groups was highly significant. Delusions of grandiosity characterized mostly patients with manic symptoms (bipolar mania 20%; bipolar mixed states 19%; manic schizoaffective disorder 10%). They were observed significantly more often in bipolar mania than in schizophrenia (7%). Persecutory delusions were broadly distributed across diagnostic categories. However, they were significantly more frequent among patients with schizophrenia and delusional disorder compared with depressed and manic patients. Somatic delusions were also observed in all diagnostic groups, with no group standing out as distinct from the others in terms of an increased prevalence of somatic delusions. Our findings suggest a middle position in the debate between the neurocognitive and the psychopathological approaches. On the one hand, the widespread observation of persecutory delusions suggests the usefulness of searching for non-specific pathogenic mechanisms. On the other hand, the association between some delusional contents and psychiatric diagnosis suggests that a phenomenological analysis of the delusional experience may be a helpful tool for the clinician in the diagnostic process.
The Spatial Factor, Rather than Elevated CO2, Controls the Soil Bacterial Community in a Temperate Forest Ecosystem

ABSTRACT The global atmospheric carbon dioxide (CO2) concentration is expected to increase continuously over the next century. However, little is known about the responses of soil bacterial communities to elevated CO2 in terrestrial ecosystems. This study aimed to partition the relative influences of CO2, nitrogen (N), and the spatial factor (different sampling plots) on soil bacterial communities at the free-air CO2 enrichment research site in Duke Forest, North Carolina, by two independent techniques: an entirely sequencing-based approach and denaturing gradient gel electrophoresis. Multivariate regression tree analysis demonstrated that the spatial factor could explain more than 70% of the variation in soil bacterial diversity and 20% of the variation in community structure, while CO2 or N treatment explains less than 3% of the variation. For the effects of soil environmental heterogeneity, the diversity estimates were distinguished mainly by the total soil N and C/N ratio. Bacterial diversity estimates were positively correlated with total soil N and negatively correlated with C/N ratio. There was no correlation between the overall bacterial community structures and the soil properties investigated. This study contributes to the information about the effects of elevated CO2 and soil fertility on soil bacterial communities and the environmental factors shaping the distribution patterns of bacterial community diversity and structure in temperate forest soils.
Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence

Despite recent advances in our understanding of the genomics of members of the genus Leptospira, little is known on how virulence has emerged in this heterogeneous bacterial genus as well as on the lifestyle of pathogenic members of the genus Leptospira outside animal hosts. Here, we isolated 12 novel species of the genus Leptospira from tropical soils, significantly increasing the number of known species to 35 and finding evidence of highly unexplored biodiversity in the genus. Extended comparative phylogenomics and pan-genome analyses at the genus level by incorporating 26 novel genomes, revealed that, the traditional leptospiral ‘pathogens’ cluster, as defined by their phylogenetic position, can be split in two groups with distinct virulence potential and accessory gene patterns. These genomic distinctions are strongly linked to the ability to cause or not severe infections in animal models and humans. Our results not only provide new insights into virulence evolution in the members of the genus Leptospira, but also lay the foundations for refining the classification of the pathogenic species.
Relevance of chromosome 13 aberrations in canine tumours

Summary For human tumours there are many reports documenting the correlation between chromosome aberrations and tumour entities. Due to the complex canine karyotypic pattern (78 chromosomes), cytogenetic studies of tumours of the dog are rare. However, the reports in the literature show, that canine chromosome 13 (CFA 13) is predominantly involved in chromosomal changes. Interestingly, CFA 13 shows high homology to regions on the human chromosomes 4 (HSA 4) and 8 (HSA 8), which harbour the proto-oncogenes c-KIT and c-MYC. Both of these genes are involved in the development and progression of some human and canine tumour diseases.