Miracle-dz/UniFAR-FTUs huggingface dataset:
On-the-fly Detection of Autogenerated Tweets

Most previous work related to tweet classification have focused on identifying a given tweet as a spam, or to classify a Twitter user account as a spammer or a bot. In most cases the tweet classification has taken place offline, on a pre-collected dataset of tweets. In this paper we present an \emph{on-the-fly} approach to classify each newly downloaded tweet as \emph{autogenerated} or not. We define an autogenerated tweet (AGT) as a tweet where all or parts of the natural language content is generated automatically by a bot or other type of program. Our on-the-fly approach makes use of two classifiers. The first classifies a tweet solely based on the twitter text and the tweet metadata that comes with every tweet. It is used for tweets posted by unknown users with no available tweet history. An unknown user also triggers a batch job to start downloading the missing user timeline information. The second classifier is used for tweets posted by a user where the user timeline is downloaded and available. Initially, it will be the first classifier that handles most of the tweets. This will gradually change and after an initialization phase where we download historic data for the most active users, we reach a state where the second classifier handles a vast majority of all the tweets. A simulation using our on-the-fly detection mechanism indicates that we can handle Twitter streams with up to 68,000 unique users each day. The bottleneck is the time required to download new user timelines. The AGT detection is very accurate. In a set of 5,000 tweets we correctly classified about 98\% of all AGTs using a subject-wise cross-validation.
Phase I Trial of M7824 (MSB0011359C), a Bifunctional Fusion Protein Targeting PD-L1 and TGFβ, in Advanced Solid Tumors

Purpose: M7824 (MSB0011359C) is an innovative first-in-class bifunctional fusion protein composed of a mAb against programmed death ligand 1 (PD-L1) fused to a TGFβ “trap. ” Experimental Design: In the 3+3 dose-escalation component of this phase I study (NCT02517398), eligible patients with advanced solid tumors received M7824 at 1, 3, 10, or 20 mg/kg once every 2 weeks until confirmed progression, unacceptable toxicity, or trial withdrawal; in addition, a cohort received an initial 0.3 mg/kg dose to evaluate pharmacokinetics/pharmacodynamics, followed by 10 mg/kg dosing. The primary objective is to determine the safety and maximum tolerated dose (MTD); secondary objectives include pharmacokinetics, immunogenicity, and best overall response. Results: Nineteen heavily pretreated patients with ECOG 0–1 have received M7824. Grade ≥3 treatment-related adverse events occurred in four patients (skin infection secondary to localized bullous pemphigoid, asymptomatic lipase increase, colitis with associated anemia, and gastroparesis with hypokalemia). The MTD was not reached. M7824 saturated peripheral PD-L1 and sequestered any released plasma TGFβ1, -β2, and -β3 throughout the dosing period at >1 mg/kg. There were signs of efficacy across all dose levels, including one ongoing confirmed complete response (cervical cancer), two durable confirmed partial responses (PR; pancreatic cancer; anal cancer), one near-PR (cervical cancer), and two cases of prolonged stable disease in patients with growing disease at study entry (pancreatic cancer; carcinoid). Conclusions: M7824 has a manageable safety profile in patients with heavily pretreated advanced solid tumors. Early signs of efficacy are encouraging, and multiple expansion cohorts are ongoing in a range of tumors. Clin Cancer Res; 24(6); 1287–95. ©2018 AACR.
Modeling polypharmacy side effects with graph convolutional networks

Motivation: The use of drug combinations, termed polypharmacy, is common to treat patients with complex diseases or co-existing conditions. However, a major consequence of polypharmacy is a much higher risk of adverse side effects for the patient. Polypharmacy side effects emerge because of drug-drug interactions, in which activity of one drug may change, favorably or unfavorably, if taken with another drug. The knowledge of drug interactions is often limited because these complex relationships are rare, and are usually not observed in relatively small clinical testing. Discovering polypharmacy side effects thus remains an important challenge with significant implications for patient mortality and morbidity. Results: Here, we present Decagon, an approach for modeling polypharmacy side effects. The approach constructs a multimodal graph of protein-protein interactions, drug-protein target interactions, and the polypharmacy side effects, which are represented as drug-drug interactions, where each side effect is an edge of a different type. Decagon is developed specifically to handle such multimodal graphs with a large number of edge types. Our approach develops a new graph convolutional neural network for multirelational link prediction in multimodal networks. Unlike approaches limited to predicting simple drug-drug interaction values, Decagon can predict the exact side effect, if any, through which a given drug combination manifests clinically. Decagon accurately predicts polypharmacy side effects, outperforming baselines by up to 69%. We find that it automatically learns representations of side effects indicative of co-occurrence of polypharmacy in patients. Furthermore, Decagon models particularly well polypharmacy side effects that have a strong molecular basis, while on predominantly non-molecular side effects, it achieves good performance because of effective sharing of model parameters across edge types. Decagon opens up opportunities to use large pharmacogenomic and patient population data to flag and prioritize polypharmacy side effects for follow-up analysis via formal pharmacological studies. Availability: Source code and preprocessed datasets are at: http://snap.stanford. edu/decagon. Contact: jure@cs.stanford. edu
Presidential Address: A History of Appendicitis: With Anecdotes Illustrating Its Importance

Two hundred years after its anatomical description, the appendix was observed to be the site of inflammatory disease. This was not widely accepted until the publication by Fitz 120 years later. American surgeons led in demonstrating that early appendectomy was safe and life saving. Perforation of the appendix with peritonitis continues to be a significant problem, but the mortality rate has dramatically declined. Appendiceal disease has clearly affected the course of history.
The metalloprotease SepA governs processing of accumulation‐associated protein and shapes intercellular adhesive surface properties in Staphylococcus epidermidis

The otherwise harmless skin inhabitant Staphylococcus epidermidis is a major cause of healthcare‐associated medical device infections. The species' selective pathogenic potential depends on its production of surface adherent biofilms. The Cell wall‐anchored protein Aap promotes biofilm formation in S. epidermidis, independently from the polysaccharide intercellular adhesin PIA. Aap requires proteolytic cleavage to act as an intercellular adhesin. Whether and which staphylococcal proteases account for Aap processing is yet unknown. Here, evidence is provided that in PIA‐negative S. epidermidis 1457Δica, the metalloprotease SepA is required for Aap‐dependent S. epidermidis biofilm formation in static and dynamic biofilm models. qRT‐PCR and protease activity assays demonstrated that under standard growth conditions, sepA is repressed by the global regulator SarA. Inactivation of sarA increased SepA production, and in turn augmented biofilm formation. Genetic and biochemical analyses demonstrated that SepA‐related induction of biofilm accumulation resulted from enhanced Aap processing. Studies using recombinant proteins demonstrated that SepA is able to cleave the A domain of Aap at residue 335 and between the A and B domains at residue 601. This study identifies the mechanism behind Aap‐mediated biofilm maturation, and also demonstrates a novel role for a secreted staphylococcal protease as a requirement for the development of a biofilm.
Planck's confirmation of the M31 disk and halo rotation

Planck's data acquired during the first 15.4 months of observations towards both the disk and halo of the M31 galaxy are analyzed. We confirm the existence of a temperature asymmetry, previously detected by using the 7-year WMAP data, along the direction of the M31 rotation, therefore indicative of a Doppler-induced effect. The asymmetry extends up to about 10 degrees (about 130 kpc) from the M31 center. We also investigate the recent issue raised in Rubin and Loeb (2014) about the kinetic Sunyaev-Zeldovich effect from the diffuse hot gas in the Local Group, predicted to generate a hot spot of a few degrees size in the CMB maps in the direction of M31, where the free electron optical depth gets the maximum value. We also consider the issue whether in the opposite direction with respect to the M31 galaxy the same effect induces a minimum in temperature in the Planck's maps of the sky. We find that the Planck's data at 100 GHz show an effect even larger than that expected.
Folic acid supplements and risk for oral clefts in the newborn: a population-based study

Abstract Results from previous studies on maternal folic acid intake and infant oral clefts are inconclusive. The aim of the present study was to investigate the association between women’s use of folic acid and/or multivitamin supplements and the risk for oral cleft in the newborn. We used data from the Medical Birth Registry of Norway based on all births in Norway from 1999 to 2013. A total of 528 220 women had 880 568 pregnancies, resulting in 896 674 live births and stillbirths, of which 1623 had oral clefts (isolated oral clefts, n 1311; non-isolated oral clefts, n 312). Altogether, 21·5 % of women were vitamin supplement users before pregnancy. The birth prevalence of oral clefts was 1·81/1000 live births and stillbirths. Relative risks (RR) were estimated with log-binomial regression. For pregnancies with maternal use of vitamins, the adjusted RR for clefts overall was 0·90 (95 % CI 0·79, 1·04). The adjusted RR for cleft palate only (n 586) was 0·84 (95 % CI 0·66, 1·06) and that for cleft lip with or without cleft palate (n 1037) was 0·94 (95 % CI 0·79, 1·13). Associations were stronger for cleft cases that occurred in combination with other malformations (adjusted RR 0·63; 95 % CI 0·45, 0·88), although vitamin supplements provided no protection against isolated clefts (adjusted RR 0·98; 95 % CI 0·84, 1·15). In conclusion, our study demonstrates no statistically significant association between vitamin use and isolated oral clefts. However, we found lower risk for oral clefts that occurred in combination with other malformations.
Carcass composition, feed intake, and feed efficiency following long-term selection for four-week body weight in Japanese quail.

A study was conducted to determine BW, feed intake, feed efficiency, and carcass composition changes following 51 generations of selection for high 4-wk BW in Japanese quail. Quail lines utilized were the P line selected for high 4-wk BW on a normal 28% CP diet and the unselected base population (C line) from which the P line originated. Body weight, feed intake, and feed efficiency data were collected daily from 1 to 28 days, whereas percentage carcass water, ash, protein, and total lipid data were obtained at 0, 4, 7, 10, 14, 21, 28, 42, and 56 days of age. Body weights of P line quail were significantly (P < .05) larger than BW of C line quail at all ages with the greatest deviation occurring at the age of selection. Feed intake was significantly greater in the P line and paralleled BW increases. When feed intake was adjusted for differences in BW, P line quail consumed less feed per gram of BW than C line quail and adjusted feed intake declined with age after Week 1. The P line quail had superior feed efficiency compared with C line quail from 1 to 13 days of age with the greatest deviation immediately posthatch. Carcass composition determinations revealed significant (P < .05) age and line effects. Both percentage ash and protein increased from hatch to 14 days and thereafter remained constant. However, percentage water and total lipid demonstrated contrasting responses to increasing age; percentage water declined whereas percentage total lipid increased. The P line quail had less carcass water and protein, but had more lipid. (ABSTRACT TRUNCATED AT 250 WORDS)
Research note: vitamin E status of turkey poults as influenced by different dietary vitamin E sources, a bile salt, and an antioxidant.

An experiment was conducted to determine the effects of level and chemical form of dietary vitamin E on alpha-tocopherol status of poults. The effects of a dietary bile salt and an antioxidant on concentrations of alpha-tocopherol in serum and liver were also tested. Six dietary treatments were obtained by supplementing a corn-soybean meal diet with 12 IU of DL-alpha-tocopheryl acetate (TA)/kg (LE), 12 IU of TA plus 800 mg of sodium taurocholate/kg (LB), 12 IU of TA plus 500 mg of ethoxyquin/kg (LS), 12 IU of D-alpha-tocopheryl polyethylene glycol 1,000 succinate (TPGS)/kg (LT), 100 IU of TA/kg (HE), and 100 IU of TPGS/kg (HT). Growth rate and feed efficiency of poults were unaffected (P > .05) by dietary treatments. The HE diet increased alpha-tocopherol in liver (P < .01) at 14 and 21 days of age. Liver and serum alpha-tocopherol concentrations were unaffected by dietary TPGS (LT and HT diets) at any age. Serum alpha-tocopherol concentration was unaffected by dietary treatments at 5 days of age. The HE diet, however, increased (P < .01) serum alpha-tocopherol at 9, 14, and 21 days of age. Age-related changes in alpha-tocopherol concentration were observed. Both liver and serum alpha-tocopherol decreased markedly from 1 to 14 days of age. The HE diet only partly alleviated the reduction of alpha-tocopherol in liver and serum. The water-soluble form of vitamin E, TPGS, dietary sodium taurocholate, or dietary ethoxyquin, did not prevent the marked decline in alpha-tocopherol concentration of liver and serum during the 21-day experiment.
The effect of pelleting, salt, and pentosanase on the viscosity of intestinal contents and the performance of broilers fed rye.

An experiment was conducted to determine the impact of pelleting of rye, dietary salt (.39 and .57%), and crude pentosanase supplementation (0 and .2%) on the viscosity of intestinal contents and the concomitant performance of broiler chicks fed rye-based diets. Each treatment was replicated six times with six birds per replicate. Test diets were fed from 1 day to 3 wk of age, at which time body weight, feed intake, intestinal viscosity, and molecular weight distribution of carbohydrate complexes were determined in fore and hind gut sections. Enzyme supplementation in all treatment combinations significantly increased weight gains and feed conversion efficiency (FCE). Pelleting and salt did not influence weight gain or FCE, although feed intake was increased through the addition of salt. The viscosity of fore and hind gut contents was significantly reduced with pentosanase supplementation, whereas the effects of salt or pelleting were not as clearly defined. Weight gain and FCE correlated with fore but not hind gut viscosity. The viscosity of gut samples was found to be best described by the concentration of carbohydrate complexes with an average molecular weight greater than 500,000 Da. Pentosanase treatment reduced lumenal concentration of these complexes, thereby reducing viscosity and stimulating improvements in growth and FCE.
Children’s sleep and academic achievement

Poor sleep is thought to interfere with children’s learning and academic achievement (AA). However, existing research and theory indicate there are factors that may mitigate the academic risk associated with poor sleep. The purpose of this study was to examine the moderating role of children’s effortful control (EC) on the relation between sleep and AA in young children. One hundred and three 4.5- to 7-year-olds (M = 5.98 years, SD = 0.61) wore a wrist-based actigraph for five continuous weekday nights. Teachers and coders reported on children’s EC. EC was also assessed with a computer-based task at school. Additionally, we obtained a standardized measure of children’s AA. There was a positive main effect of sleep efficiency to AA. Several relations between sleep and AA were moderated by EC and examination of the simple slopes indicated that the negative relation between sleep and AA was only significant at low levels of EC.
Intranasal oxytocin administration improves depression-like behaviors in adult rats that experienced neonatal maternal deprivation

Oxytocin (OT), a hypothalamic neuropeptide, has been implicated in the regulation of social behaviors in rodents and humans. This study assessed the effects of intranasal administration of OT on depressive-like behaviors and hippocampal neurogenesis in adult rats following neonatal maternal deprivation (NMD). Here, we show that NMD resulted in significant depression-like behaviors, as indicated by decreases in physical activity and emotional reactivity in a novel environment, in 2-month-old animals. Notably, the OT levels in the plasma, hypothalamus, and hippocampus were decreased in these animals. Intranasal administration of OT reduced the depressive-like behaviors in NMD rats and rescued hippocampal long-term plasticity impaired by NMD stress in rats by promoting hippocampal neurogenesis. These results indicate that OT alleviates the depressive-like behaviors in NMD adult rats, probably mediated by improving adult hippocampal neurogenesis.
Early feed restriction in chicks: effect of age, duration, and sex.

Several regimens of feed restriction, calculated to support the maintenance of body weight without any allowance for growth, were applied beginning at the ages of 3 to 11 days for periods of 3 to 7 days using male and female broilers. In males, the 7-day feed restriction treatment resulted in improved feed efficiency on an age basis, or on a body weight basis after body weight had reached . 7 to 1 kg. Feed restriction also resulted in a reduction in the amount of abdominal fat at the age of 54 to 59 days without any concomitant reduction in body weight. Within the range tested, 3 to 11 days of age, the initiation of the 7-day restriction treatment did not affect response. Similar responses were obtained in females, but with little benefit in feed efficiency when compared with ad libitum-fed birds on a body-weight basis. Also in females, reduction in 56-day body weight and loss of benefits derived from improved feed efficiency and reduced carcass fat could be avoided if the period of restriction was kept at 3 to 5 days.
Potassium balance of the 5 to 8-week-old broiler exposed to constant heat or cycling high temperature stress and the effects of supplemental potassium chloride on body weight gain and feed efficiency.

Four experiments were conducted to study the impact of ambient temperature and relative humidity stress upon K excretion and the effects of KCl supplementation of broilers exposed to chronic heat and cycling temperature stress. Potassium excretion, corrected for K intake and body weight, increased by 633% as ambient temperature was elevated from a constant 24 C to a constant 35 C. Feed (.73% K) and drinking water (0% K) were supplemented with KCl so effects of KCl on live weight gain and feed efficiency could be evaluated. In a previous study at thermoneutral temperature, no benefit of supplemental KCl was observed whereas in this study a dietary level of 1.5 to 2% K in the form of KCl improved gain under conditions of chronic high ambient temperature stress. This equals about 1.8 to 2.3 g K per chick daily or about . 24 to . 3% of the drinking water.
Threonine requirement and threonine imbalance in broiler chickens.

Three experiments were conducted to determine the effect of excess dietary protein on threonine requirement of broiler chicks to 14 d of age (Experiments 1 and 2) and to determine the threonine requirement from 16 to 28 d of age (Experiment 3). Two dietary protein levels were used in Experiments 1 and 2:20% CP in a threonine-limiting basal diet containing wheat, peanut meal, and selected amino acids and 25% CP in the same basal diet supplemented with a mixture of amino acids lacking threonine. A threonine-limiting 25% CP diet based on corn, soybean meal, and amino acids was also included in Experiment 2. The threonine requirement of chicks from 16 to 28 d of age was determined using a single CP level (20%) in Experiment 3. Threonine requirements were estimated by broken line regression analysis of weight gain and feed efficiency. Threonine requirements based on weight gain were 7.7 and 6.7 g/kg of diet in Experiments 1 and 2, respectively, for chicks receiving the 20% CP diets. The requirements increased to 8.6 and 8.2 g/kg, respectively, for chicks fed the 25% CP diets based on wheat, peanut meal, and amino acids. The requirement for maximum weight gain of chicks fed 25% CP based on corn, soybean meal, and amino acids was 7.7 g/kg of diet. However, chicks ate more of this diet, and on an intake basis, the requirement of the chicks fed the 25% CP diets based on wheat and peanut meal or corn and soybean meal did not differ. Requirements based on feed efficiency were equal to, or less than, those based on weight gain in Experiments 1 and 2. Body moisture and fat contents were affected by dietary CP level (P < .01), ingredient composition (P < .01), and threonine content (P < .05). Estimates of threonine requirements based on regression analysis of plasma threonine concentrations were higher than those based on weight gain or feed efficiency. The threonine requirements of chicks fed a 20% CP diet from 16 to 28 d of age were 6.3 and 6.9 g/kg of diet based on weight gain and feed efficiency, respectively.
Growth, livability, and feed conversion of 1957 vs 1991 broilers when fed "typical" 1957 and 1991 broiler diets.

The relative contributions of genetic selection and dietary regimen on the performance of broilers was assessed. Body weight, feed consumption, mortality (M), and the degree of tibial dyschondroplasia (TD) were measured in the 1957 Athens-Canadian Randombred Control (ACRBC) strain of broilers and in the 1991 Arbor Acres (AA) feather-sexable strain when fed "typical" 1957 and 1991 diets. Energy and protein levels, vitamin and mineral packs, and the coccidiostats used in the two dietary regimens were chosen to be representative of those in use by the industry for the two time periods. Eight treatment groups, i.e., two strains, two sexes, and two dietary regimens, were assigned into four blocks of eight litter floor pens for grow out. The 1957 diets were fed as mash, and the 1991 starter and grower diets were fed as crumbles and pellets, respectively. Feed consumption and BW were recorded at 21, 42, 56, 70, and 84 d of age, a period covering the normal marketing ages for the two broilers. Mortality and the cause of death was recorded daily. The incidence and severity of TD was assessed using a Lixiscope at 42 d of age. Average BW were 190, 508, 790, 1,087, and 1,400 g for the ACRBC on the 1957 diets vs 700, 2,132, 3,108, 3,812, and 4,498 g for the AA on the 1991 diets at 21, 42, 56, 70, and 84 d of age, respectively. The 1991 diets increased the BW of the AA by an average of 14% (20% at 42 d, but only 8% at 84 d) and of the ACRBC by 22%. The BW advantage for the 1991 diet over the 1957 diet for the AA was less for males than for females after 42 d of age, and the advantage decreased with age, probably due to the increasing incidence of leg problems. The M for AA was 9.1% vs 3.3% for the ACRBC at 42 d. Most of the ACRBC M occurred before 21 d, whereas M occurred throughout for the AA, with most after 21 d due to flip-overs and ascites. The feed conversion at 42 d for the ACRBC on the 1957 diet was 3.00 vs 2.04 for the AA on the 1991 diet. The AA on the 1991 diet had a 48.6% incidence of TD vs 25.6% on the 1957 diet. The ACRBC had approximately 1.2% TD on both diets. The TD was more severe with the 1991 diet.