Miracle-dz/UniFAR-FTUs huggingface dataset:
Infectious Aneurysm of the Cavernous Carotid Artery in a Child Treated With a New‐Generation of Flow‐Diverting Stent Graft: Case Report

OBJECTIVETo report a unique case of wide-necked mycotic cerebral aneurysm treated with a new generation of intracranial stent. CLINICAL PRESENTATIONA 10-year-old girl presented with meningitis complicated by an infectious intracavernous large aneurysm revealed by cranial nerve palsy. INTERVENTIONThe aneurysm was treated by a new-generation, flow-diverting, endoluminal implant (SILK; BALT EXTRUSION, Montmorency, France) placed across the aneurysm neck without coiling. Angiographic controls showed complete thrombosis of the aneurysmal sac with dramatic improvement of symptoms a couple of weeks after the procedure. Follow-up magnetic resonance imaging and digital subtraction angiography 3 months after the procedure, confirmed total occlusion of the aneurysm with normal circulation in the parent vessel CONCLUSIONThis is a simple and highly effective way to exclude an aneurysm from the parent vessel without the difficulties observed with the semi-rigid stents. Flow-disrupting stent grafting may be a safe and effective alternative treatment for large intracranial aneurysms.
Higher Thermal Acclimation Potential of Respiration but Not Photosynthesis in Two Alpine Picea Taxa in Contrast to Two Lowland Congeners

The members of the genus Picea form a dominant component in many alpine and boreal forests which are the major sink for atmospheric CO2. However, little is known about the growth response and acclimation of CO2 exchange characteristics to high temperature stress in Picea taxa from different altitudes. Gas exchange parameters and growth characteristics were recorded from four year old seedlings of two alpine (Picea likiangensis vars. rubescens and linzhiensis) and two lowland (P. koraiensis and P. meyeri) taxa. Seedlings were grown at moderate (25°C/15°C) and high (35°C/25°C) day/night temperatures, for four months. The approximated biomass increment (ΔD2H) for all taxa decreased under high temperature stress, associated with decreased photosynthesis and increased respiration. However, the two alpine taxa exhibited lower photosynthetic acclimation and higher respiratory acclimation than either lowland taxon. Moreover, higher leaf dry mass per unit area (LMA) and leaf nitrogen content per unit area (Narea), and a smaller change in the nitrogen use efficiency of photosynthesis (PNUE) for lowland taxa indicated that these maintained higher homeostasis of photosynthesis than alpine taxa. The higher respiration rates produced more energy for repair and maintenance biomass, especially for higher photosynthetic activity for lowland taxa, which causes lower respiratory acclimation. Thus, the changes of ΔD2H for alpine spruces were larger than that for lowland spruces. These results indicate that long term heat stress negatively impact on the growth of Picea seedlings, and alpine taxa are more affected than low altitude ones by high temperature stress. Hence the altitude ranges of Picea taxa should be taken into account when predicting changes to carbon fluxes in warmer conditions.
The Effect of Flurbiprofen on Postoperative Sore Throat and Hoarseness After LMA-ProSeal Insertion: A Randomised, Clinical Trial.

OBJECTIVE We hypothesized that flurbiprofen lozenges reduce the ProSeal laryngeal mask airway (LMA) related symptoms of Post Operative Sore Throat (POST), hoarseness and dysphagia compared to placebo lozenges. METHODS Eighty American Society of Anesthesiologists (ASA) I-II patients undergoing general anaesthesia with LMA were included in this prospective, randomized, placebo-controlled clinical and single centre (university hospital) study. Group F received an 8.75 mg flurbiprofen lozenge (Strefen(®)) and Group P received a placebo lozenge 45 minutes before the induction of anaesthesia. Postoperative sore throat, hoarseness and dysphagia were evaluated 30 minutes after removal of the LMA in the recovery room and then at 4, 12 and 24 h after surgery using a 4-point scale. Data were analysed using Student's t test, and Fisher's exact and Mann-Whitney U tests. A p value of <0.05 was considered statistically significant. RESULTS The 8.75 mg flurbiprofen lozenges reduced the severity of early (30 mins) POST and dysphagia. The severity of dysphagia at 4 h and hoarseness at 12 h were also significantly reduced in Group F. There were no significant differences betweeen the groups regarding incidence of sore throat, dysphagia and hoarseness throughout the study period. CONCLUSION Preoperative flurbiprofen lozenges reduce the severity of early postoperative sore throat and dysphagia.
ABCG5 and ABCG8 require MDR2 for secretion of cholesterol into bile Published, JLR Papers in Press, June 1, 2005. DOI 10.1194/jlr.M500115-JLR200

The major pathway for the removal of cholesterol from the body is via secretion into the bile. Three members of the ATP binding cassette (ABC) family, ABCG5 (G5), ABCG8 (G8), and ABCB4 (MDR2), are required for the efficient biliary export of sterols. Here, we examined the interdependence of these three ABC transporters for biliary sterol secretion. Biliary lipid levels in mice expressing no MDR2 (Mdr2−/− mice) were compared with those of Mdr2−/− mice expressing 14 copies of a human G5 (hG5) and hG8 transgene (Mdr2−/−;hG5G8Tg mice). Mdr2−/− mice had only trace amounts of biliary cholesterol and phospholipids. The Mdr2−/−;hG5G8Tg mice had biliary cholesterol levels as low as those of Mdr2−/− mice. Thus, MDR2 expression is required for G5G8-mediated biliary sterol secretion. To determine whether the reduction in fractional absorption of dietary sterols associated with G5G8 overexpression is secondary to the associated increase in biliary cholesterol, we compared the fractional absorption of sterols in Mdr2−/−;hG5G8Tg and hG5G8Tg animals. Inactivation of MDR2 markedly attenuated the reduction in fractional sterol absorption associated with G5G8 overexpression. These results are consistent with the notion that increased biliary cholesterol secretion contributes to the reduction in fractional sterol absorption associated with G5G8 overexpression.
Adaptive piecewise polynomial estimation via trend filtering

We study trend filtering, a recently proposed tool of Kim et al. [SIAM Rev. 51 (2009) 339-360] for nonparametric regression. The trend filtering estimate is defined as the minimizer of a penalized least squares criterion, in which the penalty term sums the absolute $k$th order discrete derivatives over the input points. Perhaps not surprisingly, trend filtering estimates appear to have the structure of $k$th degree spline functions, with adaptively chosen knot points (we say ``appear'' here as trend filtering estimates are not really functions over continuous domains, and are only defined over the discrete set of inputs). This brings to mind comparisons to other nonparametric regression tools that also produce adaptive splines; in particular, we compare trend filtering to smoothing splines, which penalize the sum of squared derivatives across input points, and to locally adaptive regression splines [Ann. Statist. 25 (1997) 387-413], which penalize the total variation of the $k$th derivative. Empirically, we discover that trend filtering estimates adapt to the local level of smoothness much better than smoothing splines, and further, they exhibit a remarkable similarity to locally adaptive regression splines. We also provide theoretical support for these empirical findings; most notably, we prove that (with the right choice of tuning parameter) the trend filtering estimate converges to the true underlying function at the minimax rate for functions whose $k$th derivative is of bounded variation. This is done via an asymptotic pairing of trend filtering and locally adaptive regression splines, which have already been shown to converge at the minimax rate [Ann. Statist. 25 (1997) 387-413]. At the core of this argument is a new result tying together the fitted values of two lasso problems that share the same outcome vector, but have different predictor matrices.
Procoagulant Activity of Endothelial Cells after Infection with Respiratory Viruses

Summary Influenza virus epidemics are associated with excess mortality due to cardiovascular diseases. There are several case reports of excessive coagulation during generalised influenza virus infection. In this study, we demonstrate the ability of respiratory viruses (influenza A, influenza B, parainfluenza-1, respiratory syncytial virus, adenovirus, cytomegalovirus) to infect lung fibroblasts and human umbilical vein endothelial cells in culture. All viral pathogens induced procoagulant activity in infected endothelial cells, as determined in a one-stage clotting assay, by causing an average 55% reduction in the clotting time. When factor VII deficient plasma was used clotting time was not reduced. The induction of procoagulant activity was associated with a 4- to 5-fold increase in the expression of tissue factor, as measured by the generation of factor Xa. Both experiments indicate that the procoagulant activity of endothelial cells in response to infection with respiratory viruses is caused by upregulation of the extrinsic pathway. Although both enveloped viruses and a non-enveloped virus (adenovirus) induced procoagulant activity in endothelial cells by stimulating tissue factor expression, the role of the viral envelope in the assembly of the prothrombinase complex remains uncertain. We conclude that both enveloped and non-enveloped respiratory viruses are capable of infecting cultured human endothelial cells and causing a shift from anticoagulant to procoagulant activity associated with the induction of tissue factor expression.
Pilot Study of a Commercialized Human Papillomavirus (HPV) Genotyping Assay: Comparison of HPV Risk Group to Cytology and Histology

ABSTRACT We evaluated a commercialized PCR assay, Linear Array, that detects 37 human papillomavirus (HPV) genotypes, using a sample of liquid cytology specimens (n = 534). We found a strong association of an increasing level of HPV risk (HPV type 16 [HPV16] > HPV18 > other carcinogenic types > noncarcinogenic types > negative specimens) with increasing severities of cytologic interpretations (PTrend < 0.0005) and histologic diagnoses (PTrend < 0.0005).
ACROSOME REACTION IN FERTILE AND SUBFERTILE BOAR SPERM

The main purpose of sperm evaluation is to predict its fertilizing ability. However, basic sperm test results show a low correlation with fertilizing ability. The purpose of this study was to determine whether there is an association between acrosome reaction (AR) and the incidence of subfertility of normal sperm boar. The production records of 22 farms were analyzed to identify boars with low fertility and/or prolificity, classified as subfertile. Twenty-two subfertile boar semen samples were analyzed and compared with 51 samples of fertile boars. Sperm were capacitated during 4 h at 39°C, viability was determined by bisbenzimide (Hoechst-33258) staining. Acrosome reaction was assessed with fluorescein isothiocyanate conjugated Pisum sativum agglutinin. The percentage of spontaneous acrosome reaction (SAR) was not significantly different in fertile (4.5%) and subfertile boars (4.75%) ( p >. 05). Nevertheless, the percentage of progesterone-induced acrosome reaction (IAR) was significantly lower in subfertile boars (5.75%) as compared with fertile boars (10%) ( p <. 01). These results suggest that assessment of IAR in vitro may be a useful parameter to identify subfertility in boars.
Prenatal Fish Oil Supplementation and Allergy: 6-Year Follow-up of a Randomized Controlled Trial

BACKGROUND AND OBJECTIVE: Evidence from randomized controlled trials in early infancy suggest that prenatal supplementation with Ω-3 (n-3) long-chain polyunsaturated fatty acids (LCPUFA) reduces the incidence of allergic disease characterized by an immunoglobulin E (IgE) response. We aimed to determine whether protective effects were evident in the 6-year-old offspring of women supplemented with n-3 rich fish oil during pregnancy. METHODS: Six-year follow-up of children (n = 706) with a family history of allergic disease from the Docosahexaenoic Acid to Optimize Mother Infant Outcome (DOMInO) trial. Women were randomly allocated to receive n-3 LCPUFA-rich fish oil capsules (800 mg/d docosahexaenoic acid DHA and 100mg/d eicosapentaenoic acid) or vegetable oil capsules (without n-3 LCPUFA). Allergic disease symptoms including eczema, wheeze, rhinitis, and rhino-conjunctivitis, were assessed using the International Study of Asthma and Allergies in Childhood questionnaire and sensitization to allergens was measured by skin prick test. RESULTS: There was no difference in the percentage of children with any IgE-associated allergic disease between the n-3 LCPUFA and control groups (116/367 [31.5%] vs 106/336 [31.5%]; adjusted relative risk, 1.04; 95% confidence interval, 0.82–1.33; P = .73). There was a reduction in the percentage of children sensitized to house dust mite Dermatophagoides farinae (49/367 [13.4%] vs 68/336 [20.3%]; adjusted relative risk, 0.67, 95% confidence interval, 0.44–1.00; P = .0495). CONCLUSIONS: Prenatal n-3 LCPUFA supplementation did not reduce IgE-associated allergic disease at 6 years of age. Secondary outcomes were suggestive of a protective effect of the intervention on the incidence of D. farinae sensitization.
An approximate approach to H2 optimal model reduction

Deals with the problem of computing an H/sub 2/ optimal reduced-order model for a given stable multivariable linear system. By way of orthogonal projection, the problem is formulated as that of minimizing the H/sub 2/ model-reduction cost over the Stiefel manifold so that the stability constraint on reduced-order models is automatically satisfied and thus totally avoided in the new problem formulation. The closed form expression for the gradient of the cost over the manifold is derived, from which a gradient flow results as an ordinary differential equation (ODE). A number of nice properties about such a flow are established. Furthermore, two explicit iterative convergent algorithms are developed from the flow; one has a constant step-size and the other has a varying step-size and is much more efficient. Both of them inherit the properties that the iterates remain on the manifold starting from any orthogonal initial point and that the model reduction cost is decreasing to minima along the iterates. A procedure for closing the gap between the original and modified problem is proposed. In the symmetric case, the two problems are shown to be equivalent. Numerical examples are presented to illustrate the effectiveness of the proposed algorithms as well as convergence.
Comment on "Tumor Growth Need Not Be Driven by Rare Cancer Stem Cells"

Kelly et al. (Brevia, 20 July 2007, p. 337) questioned xenotransplant experiments supporting the cancer stem cell (CSC) hypothesis because they found a high frequency of leukemia-initiating cells (L-IC) in some transgenic mouse models. However, the CSC hypothesis depends on prospective purification of cells with tumor-initiating capacity, irrespective of frequency. Moreover, we found similar L-IC frequencies in genetically comparable leukemias using syngeneic or xenogeneic models.
Empirical measurements of six allocation-intensive C programs

Dynamic memory management is an important part of a large class of computer programs and high-performance algorithms for dynamic memory management have been, and will continue to be, of considerable interest. This paper presents empirical data from a collection of six allocation-intensive C programs. Extensive statistics about the allocation behavior of the programs measured, including the distributions of object sizes, lifetimes, and interarrival times, are presented. This data is valuable for the following reasons: first, the data from these programs can be used to design high-performance algorithms for dynamic memory management. Second, these programs can be used as a benchmark test suite for evaluating and comparing the performance of different dynamic memory management algorithms. Finally, the data presented gives readers greater insight into the storage allocation patterns of a broad range of programs. The data presented in this paper is an abbreviated version of more extensive statistics that are publically available on the internet.
On the Use of Automatically Acquired Examples for All-Nouns Word Sense Disambiguation

This article focuses on Word Sense Disambiguation (WSD), which is a Natural Language Processing task that is thought to be important for many Language Technology applications, such as Information Retrieval, Information Extraction, or Machine Translation. One of the main issues preventing the deployment of WSD technology is the lack of training examples for Machine Learning systems, also known as the Knowledge Acquisition Bottleneck. A method which has been shown to work for small samples of words is the automatic acquisition of examples. We have previously shown that one of the most promising example acquisition methods scales up and produces a freely available database of 150 million examples from Web snippets for all polysemous nouns in WordNet. This paper focuses on the issues that arise when using those examples, all alone or in addition to manually tagged examples, to train a supervised WSD system for all nouns. The extensive evaluation on both lexical-sample and all-words Senseval benchmarks shows that we are able to improve over commonly used baselines and to achieve top-rank performance. The good use of the prior distributions from the senses proved to be a crucial factor.
Restructuring in Basque and the Theory of Agreement

Current syntactic literature within the Principles and Parameters framework contains two different theories of case and agreement. In the Unitary Theory, case and agreement are the result of the same operation (see Chomsky 2000, 2001); in the Split Theory, case and agreement are the result of separate, but related, operations (see Marantz 1991, Bittner and Hale 1996, Bhatt 2003). In this paper, we argue that long distance agreement in restructuring contexts in Basque provides evidence for Bhatt’s (2003) version of the Split Theory. In Basque restructuring contexts, a matrix auxiliary can agree with both embedded dative and absolutive arguments. This is exemplified in the following sentence with the restructuring verb amaitu ‘finish’:1,2
[Clinical significance of HPV L1 capsid protein detection in cervical exfoliated cells in high-risk HPV positive women].

OBJECTIVE To explore the clinical significance of human papillomavirus L1 capsid protein detection in cervical exfoliated cells in high-risk HPV positive women. METHODS From November 2012 to June 2013, 386 high-risk HPV positive (detected by hybrid capture II) cases were enrolled as eligible women from Huzhou Maternity & Child Care Hospital and Women's Hospital, School of Medicine, Zhejiang University. All eligible women underwent liquid-based cytology (ThinPrep) followed by colposcopy. Biopsies were taken if indicated. Cervical exfoliated cells were collected for HPV L1 capsid protein detection by immunocytochemistry. Expression of HPV L1 capsid protein in groups with different histological diagnosis were compared, and the role of HPV L1 capsid protein detection in cervical exfoliated cells in cervical lesions screening was accessed. RESULTS Total 386 enrolled eligible women were finally diagnosed histologically as follwed: 162 normal cervix, 94 low-grade squamous intraepithelial lesion (LSIL), 128 high-grade squamous intraepithelial lesion (HSIL) and 2 squamous cervical cancer (SCC). The positive expression rate of HPV L1 in HSIL+ (HSIL or worse) group was significantly lower than that in LSIL- (LSIL or better) group (19.2% vs 66.4%, P=0.000). While identifying HSIL+ in HPV positive cases and compared with cytology, HPV L1 detection resulted in significant higher sensitivity (80.77% vs 50.77%, P=0.000) and negative predictive value (NPV; 87.18% vs 76.47%, P=0.004), significant lower specificity (66.41% vs 81.25%, P=0.000), and comparable positive predictive value (PPV; 54.97% vs 57.89%, P=0.619). To identify HSIL+ in HPV-positive/cytology-negative women, the sensitivity, specificity, PPV, and NPV of HPV L1 detection were 87.50%, 61.54%, 41.18%, and 94.12% respectively, while 80.00%, 86.36%, 80.00% and 86.36% respectively in HPV-positive/atypical squamous cell of undetermined significance (ASCUS) women. CONCLUSIONS HPV L1 capsid detection in cervical exfoliated cells have a role in cervical lesions screening in high-risk HPV positive women, and may be a promising triage for high-risk HPV-positive/cytology-negative or ASCUS women.
Effect of Application Propolis as Biocoating on the Physical and Chemical Properties of Tomatoes Stored at Room Temperature

Tomatoes is considered as one of important horticulture commodities which highly consume by Indonesia consumer. However, this horticulture product is perishable with high rate which reduce quantity and quality of marketable products. One of the method could be used to prevent this problem by application of edible biocoating. In this study, various concentration of ethanolic propolis extract was applied to tomatoes in order to find the effect of propolis coating in tomato preservation and best concentration for application. Tomatoes were grouped into 5 group, namely control group (no coating application), ethanol group (tomato wash with ethanol), and application group (coated with 5%, 10%, and 15% propolis). Variables observed during study were weight change, fruit firmness, total soluble solute, vitamin C, and lycopene. All tomatoes were kept in room temperature for 14 days and observation conducted every 2 days. Result showed that application of 10% propolis as biocoating reduced rate of weight loss and maintained fruit firmness while other variables relatively unaffected by propolis coating.
Unsupervised discovery of microbial population structure within metagenomes using nucleotide base composition

An approach to infer the unknown microbial population structure within a metagenome is to cluster nucleotide sequences based on common patterns in base composition, otherwise referred to as binning. When functional roles are assigned to the identified populations, a deeper understanding of microbial communities can be attained, more so than gene-centric approaches that explore overall functionality. In this study, we propose an unsupervised, model-based binning method with two clustering tiers, which uses a novel transformation of the oligonucleotide frequency-derived error gradient and GC content to generate coarse groups at the first tier of clustering; and tetranucleotide frequency to refine these groups at the secondary clustering tier. The proposed method has a demonstrated improvement over PhyloPythia, S-GSOM, TACOA and TaxSOM on all three benchmarks that were used for evaluation in this study. The proposed method is then applied to a pyrosequenced metagenomic library of mud volcano sediment sampled in southwestern Taiwan, with the inferred population structure validated against complementary sequencing of 16S ribosomal RNA marker genes. Finally, the proposed method was further validated against four publicly available metagenomes, including a highly complex Antarctic whale-fall bone sample, which was previously assumed to be too complex for binning prior to functional analysis.
Long-Run Health Impacts of Income Shocks: Wine and Phylloxera in Nineteenth-Century France

Between 1863 and 1890, phylloxera destroyed 40% of French vineyards. Using the regional variation in the timing of this shock, we identify and examine the effects on adult height, health, and life expectancy of children born in the years and regions affected by the phylloxera. The shock decreased long-run height, but it did not affect other dimensions of health, including life expectancy. We find that those born in affected regions were about 1.8 millimeters shorter than others at age 20, a significant effect since average heights grew by only 2 centimeters in the entire nineteenth century.