Miracle-dz/UniFAR-FTUs huggingface dataset:
The Significance of Ectopic Germinal Centers in the Minor Salivary Gland of Patients with Sjögren’s Syndrome

We investigated the clinical and biological significance of germinal centers (GC) present in the minor salivary glands of patients with Sjögren’s syndrome (SS). Minor salivary gland tissue biopsies from 93 patients with SS were used to identify GC-like structures, which were confirmed by CD21-positive follicular dendritic cell networks. Patients were compared based upon sociodemographics, glandular and extraglandular manifestations, and laboratory findings including autoantibody profiles, complement, and immunoglobulin levels; EULAR SS disease activity index (ESSDAI) and SS disease damage index (SSDDI) were also measured. GC-like structures were observed in 28 of 93 SS patients (30.1%). Mean focus scores and CRP levels were significantly higher in GC-positive patients than in GC-negative patients; GC-positive patients also exhibit a higher prevalence of rheumatoid factor and anti-SS-A/Ro antibodies compared to GC-negative patients. No differences in glandular or extra-glandular manifestations were evident between groups. In conclusion, SS patients with GC-like structures in the minor salivary glands exhibited laboratory profiles significantly different from those of their GC-negative counterparts. Long-term follow-up of these patients will be necessary to determine whether these laboratory abnormalities are predictive of clinical outcomes.
Effects of Inclusion Levels of Wheat Bran and Body Weight on Ileal and Fecal Digestibility in Growing Pigs

The objective of this study was to determine the effects of graded inclusions of wheat bran (0%, 9.65%, 48.25% wheat bran) and two growth stages (from 32.5 to 47.2 kg and 59.4 to 78.7 kg, respectively) on the apparent ileal digestibility (AID), apparent total tract digestibility (ATTD) and hindgut fermentation of nutrients and energy in growing pigs. Six light pigs (initial body weight [BW] 32.5±2.1 kg) and six heavy pigs (initial BW 59.4±3.2 kg) were surgically prepared with a T-cannula in the distal ileum. A difference method was used to calculate the nutrient and energy digestibility of wheat bran by means of comparison with a basal diet consisting of corn-soybean meal (0% wheat bran). Two additional diets were formulated by replacing 9.65% and 48.25% wheat bran by the basal diet, respectively. Each group of pigs was allotted to a 6×3 Youden square design, and pigs were fed to three experimental diets during three 11-d periods. Hindgut fermentation values were calculated as the differences between ATTD and AID values. For the wheat bran diets, the AID and ATTD of dry matter (DM), ash, organic matter (OM), carbohydrates (CHO), gross energy (GE), and digestible energy (DE) decreased with increasing inclusion levels of wheat bran (p<0.05). While only AID of CHO and ATTD of DM, ash, OM, CHO, GE, and DE content differed (p<0.05) when considering the BW effect. For the wheat bran ingredient, there was a wider variation effect (p<0.01) on the nutrient and energy digestibility of wheat bran in 9.65% inclusion level due to the coefficient of variation (CV) of the nutrient and energy digestibility being higher at 9.65% compared to 48.25% inclusion level of wheat bran. Digestible energy content of wheat bran at 48.25% inclusion level (4.8 and 6.7 MJ/kg of DM, respectively) fermented by hindgut was significantly higher (p<0.05) than that in 9.65% wheat bran inclusion level (2.56 and 2.12 MJ/kg of DM, respectively), which was also affected (p<0.05) by two growth stages. This increase in hindgut fermentation caused the difference in ileal DE (p<0.05) to disappear at total tract level. All in all, increasing wheat bran levels in diets negatively influences the digestibility of some nutrients in pigs, while it positively affects the DE fermentation in the hindgut.
Hiring Merger-counterparty ’ s Ex-advisor as M & A Advisor : Causes and Consequences

We examine a large sample of merger transactions and find that both acquirers and targets exhibit a propensity to hire the merger counterparty’s ex-banks to advise on the deal, and this propensity is more pronounced in friendly deals. When acquirers hire targets’ ex-advisors, they pay lower premiums and obtain a higher proportion of merger synergies. The corresponding targets exhibit lower announcement returns and are less likely to be propositioned by competing bidders. These results suggest that acquirers amplify their bargaining advantage in merger negotiations by hiring target firms’ ex-advisors. However, when targets hire acquirers’ ex-advisors, there are no discernible value effects on either firm. JEL Classification: G24, G34, L11
State‐space modeling to support management of brucellosis in the Yellowstone bison population

The bison (Bison bison) of the Yellowstone ecosystem, USA, exemplify the difficulty of conserving large mammals that migrate across the boundaries of conservation areas. Bison are infected with brucellosis (Brucella abortus) and their seasonal movements can expose livestock to infection. Yellowstone National Park has embarked on a program of adaptive management of bison, which requires a model that assimilates data to support management decisions. We constructed a Bayesian state-space model to reveal the influence of brucellosis on the Yellowstone bison population. A frequency-dependent model of brucellosis transmission was superior to a density-dependent model in predicting out-of-sample observations of horizontal transmission probability. A mixture model including both transmission mechanisms converged on frequency dependence. Conditional on the frequency-dependent model, brucellosis median transmission rate was 1.87 yr−1. The median of the posterior distribution of the basic reproductive ratio (R0) was.
Exploring differences between self-regulated learning strategies of high and low achievers in open distance learning

ABSTRACT Open distance students differ in their preparedness for higher education studies. Students who are less self-regulated risk failure and drop out in the challenging milieu of open distance learning. In this study, the differences between the application of self-regulated learning strategies by low and high achievers were explored. A multi-method research design was applied. Quantitative data were statistically analysed by factor analysis (n = 246) and effect sizes. Medium to small effect sizes were found in quantitative data. Qualitative data were collected by means of semi-structured interviews. Low achievers rated their self-regulatory behaviour higher than high achievers, yet qualitative data revealed that high achievers are more self-regulated. The value of this research lies in the identification of low achievers’ use of self-regulated learning, and recognising the need to create awareness of the self-regulated learning skills necessary to support these students.
Quartz-enhanced conductance spectroscopy for nanomechanical analysis of polymer wire

Quartz-enhanced conductance spectroscopy is developed as an analytical tool to investigate dynamic nanomechanical behaviors of polymer wires, in order to determine the glass transition temperature (Tg). A polymethyl methacrylate (PMMA) microwire with a diameter of 10 μm was bridged across the prongs of a quartz tuning fork (QTF). With the advantage of QTF self-sensing as compared with micro-cantilevers or other resonators, the resonance frequency and Q factor can be directly determined by means of its electrical conductance spectra with respect to the frequency of the external excitation source (dI/dV vs f), and therefore, no optical beam is required. The Tg of the PMMA microwire was determined by the maximum loss modulus of the QTF, calculated from the resonance frequency and the Q factor as a function of temperature. The measured Tg of the PMMA is 103 °C with an error of ±2 °C. Both heating/cooling and physical aging experiments were carried out, demonstrating that the technique is both reversible and r.
Acculturation, ethnic identity, and psychological well-being of Albanian-American immigrants in the United States

ABSTRACT This study examined the relationship between acculturation, ethnic identity, and psychological well-being of the Albanian-American immigrant community in United States. A total of 139 Albanian-American immigrants aged 21–35 years old participated in the study. In order to utilize the data, participants filled out four different surveys, including a demographic questionnaire, the Multigroup Ethnic Identity Measure (MEIM), the Vancouver Index of Acculturation (VIA), and Ryff’s Psychological Well-Being scale. A correlational design relying on cross-sectional survey data and multiple regression analysis was used to study the correlations between acculturation, ethnic identity, and psychological well-being. The results showed that ethnic identity, acculturation, and psychological well-being were positively correlated to each other. In addition, the results showed that both ethnic identity and acculturation affected the psychological well-being of Albanian-American immigrants in the United States. This relationship was further moderated by gender and length of residency in the United States and mediated through graduate school education. The results of this study will help clinicians, social workers, and policy makers that work with immigrants to better understand the psychological consequences of immigration due to acculturation and ethnic identity factors.
Test Cases Generation from UML Activity Diagrams

UML activity diagram is a notation suitable for modeling a concurrent system in which multiple objects interact with each other. This paper proposes a method to generate test cases from UML activity diagrams that minimizes the number of test cases generated while deriving all practically useful test cases. Our method first builds an I/O explicit activity diagram from an ordinary UML activity diagram and then transforms it to a directed graph, from which test cases for the initial activity diagram are derived. This conversion is performed based on the single stimulus principle, which helps avoid the state explosion problem in test generation for a concurrent system.
Acoustic Structure and Contextual Use of Calls by Captive Male and Female Cheetahs (Acinonyx jubatus)

The vocal repertoire of captive cheetahs (Acinonyx jubatus) and the specific role of meow vocalizations in communication of this species attract research interest about two dozen years. Here, we expand this research focus for the contextual use of call types, sex differences and individual differences at short and long terms. During 457 trials of acoustic recordings, we collected calls (n = 8120) and data on their contextual use for 13 adult cheetahs (6 males and 7 females) in four Russian zoos. The cheetah vocal repertoire comprised 7 call types produced in 8 behavioural contexts. Context-specific call types (chirr, growl, howl and hiss) were related to courting behaviour (chirr) or to aggressive behaviour (growl, howl and hiss). Other call types (chirp, purr and meow) were not context-specific. The values of acoustic variables differed between call types. The meow was the most often call type. Discriminant function analysis revealed a high potential of meows to encode individual identity and sex at short terms, however, the vocal individuality was unstable over years. We discuss the contextual use and acoustic variables of call types, the ratios of individual and sex differences in calls and the pathways of vocal ontogeny in the cheetah with relevant data on vocalization of other animals.
Phylogeographic analysis of filterable bacteria with special reference to Rhizobiales strains that occur in cryospheric habitats

Abstract Although the lower size limit of microorganisms was previously believed to be c. 0.2 μm, there is evidence for the existence of microorganisms that can pass through 0.2 μm-pore-size filters called ultramicrobacteria or nanobacteria. However, information on the phylogeny and biogeography of these bacteria is limited. We obtained 53 isolates of 0.2 μm-passable bacteria from 31 samples collected at 26 locations worldwide, including the Arctic Svalbard Islands, deserts, and Maritime Antarctica. Phylogenetic analysis of near full-length 16S rRNA gene sequences revealed that 18 of the 53 isolates were < 97% homologous with previously cultured isolates, representing potentially novel species. Two isolates (order Rhizobiales) (100% identical) collected from Byers Peninsula, Livingston Island in Maritime Antarctica, were closely related (99.8% similarity) to an isolate collected from intertidal sediments in East Antarctica. In addition, the sequence of this Antarctic isolate showed ≥ 97% similarity to 901 sequences derived from known isolates and samples collected at geographically disparate locations under various environmental conditions. Interestingly, among 13 sequences showing ≥ 99% similarity, ten were isolated from cryospheric habitats such as Arctic, Antarctic, and alpine environments. This implies that such Rhizobiales strains occur in the cryospheric regions, however, their abundance and biomass may be scarce depending on the geographic location.
Notch 1 knockdown disturbed neural oscillations in the hippocampus of C 57 BL mice

Neural oscillations and their interactions are associated with the coordination of neural groups, which provide a mechanism underlying information processing of brain functions. Notch1 receptor is involved in the neurological and psychiatric disorders, such as neurodevelopmental deficits, cerebral ischemia, Alzheimer's disease and depression. Here, we investigated the dynamics of neural oscillations in hippocampus of Notch1 mice in urethane-anesthetized state. Notch1 knockdown altered the distribution of power in the hippocampal DG areas, reduced theta (3–8 Hz) power and enhanced low gamma (LG, 30–50 Hz) and high gamma (HG, 50–100Hz) power. Moreover, theta-gamma phase-amplitude coupling in the hippocampal DG area was markedly impaired in the Notch1 mice. The data further showed that the expression of NR2B was decreased, and the expressions of GABAARα1, GAD67 and parvalbumin were considerably increased after Notch1 knockdown. Taken together, our results suggest that Notch1 genetic deficiency significantly impaired the corss-frequency coupling of neural oscillations, and their interactions in the hippocampal DG region by means of disrupting the balance of excitatory and inhibitory receptors, which could be an underlying mechanism of cognitive impairment in neuropsychiatric disorders.
Interactome analysis of myeloid-derived suppressor cells in murine models of colon and breast cancer

In solid cancers, myeloid derived suppressor cells (MDSC) infiltrate (peri)tumoral tissues to induce immune tolerance and hence to establish a microenvironment permissive to tumor growth. Importantly, the mechanisms that facilitate such infiltration or a subsequent immune suppression are not fully understood. Hence, in this study, we aimed to delineate disparate molecular pathways which MDSC utilize in murine models of colon or breast cancer. Using pathways enrichment analysis, we completed interactome maps of multiple signaling pathways in CD11b+/Gr1(high/low) MDSC from spleens and tumor infiltrates of mice with c26GM colon cancer and tumor infiltrates of MDSC in 4T1 breast cancer. In both cancer models, infiltrating MDSC, but not CD11b+ splenic cells, have been found to be enriched in multiple signaling molecules suggestive of their enhanced proliferative and invasive phenotypes. The interactome data has been subsequently used to reconstruct a previously unexplored regulation of MDSC cell cycle by the c-myc transcription factor which was predicted by the analysis. Thus, this study represents a first interactome mapping of distinct multiple molecular pathways whereby MDSC sustain cancer progression.
Comparing rock‐inhabiting microbial communities in different rock types from a high arctic polar desert

Abstract Although rocks are habitable places for microbes in extreme environments, microbial diversity in these lithic environments is still poorly understood. The diversity and abundance of rock‐inhabiting microbial communities in different types of rock in Svalbard, Norwegian High Arctic were examined using NGS sequencing of bacterial 16S rRNA genes and fungal 28S rRNA genes. Compositions of both bacterial and fungal communities varied across different rock types: sandstone, limestone, basalt, granite and travertine. Bacterial communities were dominated by Actinobacteria, Proteobacteria, Chloroflexi, Bacteroidetes and Acidobacteria. Fungal communities consisted of Eurotiomycetes, Lecanoromycetes, Dothideomycetes and Leotiomycetes. Both bacterial and fungal community compositions were significantly correlated with the geochemical characteristics of rocks. Bacterial communities were considerably correlated with the rock elements such as Mg and Ca. Fungal communities were considerably correlated with Fe. Interestingly, many dominant bacterial and fungal operational taxonomic units in the investigated rocks from the study area were closely affiliated to those found in other cold regions such as Alpine area, Arctic and Antarctica, suggesting that environmental constraints such as cold temperature may lead to convergence in microbial community composition. These results confirm that rocks in cold environments act as reservoirs of diverse bacteria and fungi, which may improve our understanding of lithic microbial ecology in the cold desert.
FOREGROUND CONTAMINATION IN INTERFEROMETRIC MEASUREMENTS OF THE REDSHIFTED 21 cm POWER SPECTRUM

Subtraction of astrophysical foreground contamination from “dirty” sky maps produced by simulated measurements of the Murchison Widefield Array (MWA) has been performed by fitting a third-order polynomial along the spectral dimension of each pixel in the data cubes. The simulations are the first to include the unavoidable instrumental effects of the frequency-dependent primary antenna beams and synthesized array beams. They recover the one-dimensional spherically binned input redshifted 21 cm power spectrum within ∼1% over the scales probed most sensitively by the MWA (0.01 ≲ k ≲ 1 Mpc−1) and demonstrate that realistic instrumental effects will not mask the epoch of reionization signal. We find that the weighting function used to produce the dirty sky maps from the gridded visibility measurements is important to the success of the technique. Uniform weighting of the visibility measurements produces the best results, whereas natural weighting significantly worsens the foreground subtraction by coupling structure in the density of the visibility measurements to spectral structure in the dirty sky map data cube. The extremely dense uv-coverage of the MWA was found to be advantageous for this technique and produced very good results on scales corresponding to |u| ≲ 500λ in the uv-plane without any selective editing of the uv-coverage.
Premorbid Personality in First-Onset Psychosis

The data presented are those from a two-year prospective study of 69 patients identified in the Nottingham field centre of the WHO Study of Determinants of Outcome of Severe Mental Disorders. Premorbid personality, childhood adjustment and adolescent adjustment were assessed at the patients' first presentation to psychiatric services with a psychotic illness. Ratings were made blind to diagnosis. Premorbid explosive and paranoid traits were commoner in patients with schizophrenia than in patients with other non-organic psychoses, and these traits were associated with later onset of schizophrenia. Premorbid schizoid traits were significantly commoner in patients with schizophrenia compared to patients with other psychoses, but only in those patients for whom a parent was the informant. Schizoid traits were no commoner in men with schizophrenia than in women, and were not associated with earlier age of onset. The findings suggest that premorbid personality, in men and women, may shape the expression of symptoms produced during an illness episode.
APPLICATION OF ADSORPTION PROCESS FOR PHENOLIC COMPOUNDS REMOVAL FROM AQUEOUS ENVIRONMENTS : A SYSTEMATIC REVIEW

Wastewater from various types of industries such as synthetic resins, plywood industries, paper and pulp, gas and coke oven plants, paints, coal gas, tanning, textile, plastic, rubber, pharmaceutical, petroleum and mine discharges, contain different types of phenols. Phenolic compounds are toxic substances and some are known or suspected carcinogens. Therefore it is important to remove phenol and phenolic compounds from contaminated industrial aqueous streams before discharged into any water bodies. Adsorption of phenol and its derivatives from aqueous solution by activated carbon is one of the most investigated of all liquid phase applications of carbon adsorbents. Several adsorbents have been used for treatment of wastewater and removal of phenolic compounds. Literature contains various adsorption processes and adsorbents such as pistachio nut shell ash, Moringa peregrina tree shell ash, agricultural fibers, red mud, low cost clay, olive mill waste, natural zeolites, rubber seed coat, peat, fly ash, bentonite and . which have been used for the removal of phenol and its derivatives. Any of chemical, biological and physical treatment processes has its own advantages and disadvantages. It is worth mentioning that economic aspects of these processes are important, for example biosorption were found to be effective methods with scope for further research in this field in terms of cost effectiveness and regeneration. At present study various adsorbents used by the authors of this article and other researchers for phenol and its derivatives from aqueous environments have been reported and summarized. Additionally, more research is needed to find the practical utility of low-cost adsorbents on commercial scale.
Cloning and Characterization of Liver cDNAs That Are Differentially Expressed between Chicken Hybrids and Their Parents

Using mRNA differential display technique, we investigated differential gene expression in hybrids relative to their parents in a diallel cross involving four chicken breeds in order to provide an insight into the molecular basis of heterosis in chicken. The results indicated that there was extensive differential gene expression between chicken F1 hybrids and their parents which was classified into four kinds of patterns as following: (1) bands only detected in hybrid F1; (2) bands only absent in hybrid F1; (3) bands only detected in parent P1 or P2; (4) bands absent in parent P1 or P2. Forty-two differentially expressed cDNAs were cloned and sequenced, and their expression patterns were confirmed by Reverse-Northern dot blot. Sequence analysis and database searches revealed that genes showed differential expression between hybrid and parents were regulatory and functional genes involved in metabolism, mRNA splicing, transcriptional regulation, cell cycles and protein modification. These results indicated that hybridization between two parents can cause changes in expression of a variety of genes. In conclusion, that the altered pattern of gene expression in hybrids may be responsible for heterosis in chickens.