Miracle-dz/UniFAR-FTUs huggingface dataset:
Effects of stimulant medication on neuropsychological functioning in young adults with attention-deficit/hyperactivity disorder.

OBJECTIVE The main goal of this study was to evaluate the impact of stimulant medication on executive function deficits in a group of adolescents and young adults with attention-deficit/hyperactivity disorder (ADHD; DSM-III-R criteria). METHOD Male and female subjects aged 15 to 25 years were divided into 3 groups: subjects with ADHD treated with stimulants who took their medication at the time of testing (ADHD active stimulant treatment: N = 26), subjects with ADHD who had not taken stimulant medication in the past month (ADHD no stimulant treatment: N = 94), and non-ADHD control subjects (controls: N = 133). The neuropsychological battery assessed domains of cognitive functioning known to be relevant in ADHD, including tests of executive functions and learning and memory. Data were collected from July 1998 to April 2003. RESULTS The ADHD no stimulant treatment group had significantly lower aggregate scores compared with the controls for the total aggregate, working memory, interference control, processing speed, sustained attention, and verbal learning domains (all p < .001). The ADHD active stimulant treatment group had significantly poorer scores on the total aggregate (p = .002), interference control (p < .001), and processing speed (p = .003) domains compared with the controls. The ADHD active stimulant treatment subjects scored significantly higher on the domains of sustained attention (p = .04) and verbal learning (p = .03) compared with the ADHD no stimulant treatment subjects. CONCLUSIONS Our study showed that subjects with ADHD who took stimulant medication had higher neuropsychological measures of attention compared with subjects with ADHD who did not take stimulant medication, but differences were not found for other measures of executive function.
Shellfish Exploitation in the Western Canary Islands Over the Last Two Millennia

ABSTRACT The residents of the Canary Archipelago consumed limpets since the arrival of humans ∼2500 yrs. ago, and these harvested gastropods were deposited in large coastal shell middens. This work preliminarily explores shell margin oxygen isotope composition (δ18O) and body size of the black limpet (Patella candei d’Orbigny, 1840) from archaeological sites in the Canary Islands to assess possible seasonal variability and intensity of shellfish collection throughout the late Holocene. The shell margin δ18O values of 100 shells (radiocarbon dated between ∼500 and ∼1800 cal. yr BP) were analysed to estimate sea surface temperature (SST) at time of death. Paleotemperature estimates suggest shellfish harvesting was not year-round, and was avoided in the cooler months (when SST < 20°C). This pattern differs from most higher latitude Mesolithic and Neolithic human groups, which gathered shellfish year-round, targeting winter more heavily. Preliminary body-size measurements suggest shell sizes have experienced a decline from aboriginal times to the present, which possibly resulted from increasing anthropogenic pressures. During aboriginal inhabitation, maximum adult shell size remained stable, suggesting that present-day harvesting practices are more intense than harvesting from aboriginal human groups. This intensive collection has likely diminished the average adult size of limpet populations in the islands by ∼27%.
A Causal Role for Endothelin-1 in the Vascular Adaptation to Skeletal Muscle Deconditioning in Spinal Cord injury

Objective—Endothelin-1 (ET-1) contributes to the increased peripheral resistance in heart failure and hypertension. Physical inactivity is associated with cardiovascular disease and characterized by increased vascular tone. In this study, we assess the contribution of ET-1 to the increased vascular tone in the extremely deconditioned legs of spinal cord-injured (SCI) individuals before and after exercise training. Methods and Results—In 8 controls and 8 SCI individuals, bilateral thigh blood flow was measured by plethysmography before and during the administration of an ETA/ETB-receptor blocker into the femoral artery. In SCI, this procedure was repeated after 6 weeks of electro-stimulated training. In a subset of SCI (n=4), selective ETA-receptor blockade was performed to determine the role of the ETA-receptors. In controls, dual ET-receptor blockade increased leg blood flow at the infused side (10%, P<0.05), indicating a small contribution of ET-1 to leg vascular tone. In SCI, baseline blood flow was lower compared with controls (P=0.05). In SCI, dual ET-receptor blockade increased blood flow (41%, P<0.001). This vasodilator response was significantly larger in SCI compared with controls (P<0.001). The response to selective ETA-receptor blockade was similar to the effect of dual blockade. Electro-stimulated training normalized baseline blood flow in SCI and reduced the response to dual ET-receptor blockade in the infused leg (29%, P=0.04). Conclusion—ET-1 mediates the increased vascular tone of extremely inactive legs of SCI individuals by increased activation of ETA-receptors. Physical training reverses the ET-1-pathway, which normalizes basal leg vascular tone.
Cry1Ac and Vip3Aa proteins from Bacillus thuringiensis targeting Cry toxin resistance in Diatraea flavipennella and Elasmopalpus lignosellus from sugarcane

The biological potential of Vip and Cry proteins from Bacillus is well known and widely established. Thus, it is important to look for new genes showing different modes of action, selecting those with differentiated entomotoxic activity against Diatraea flavipennella and Elasmopalpus lignosellus, which are secondary pests of sugarcane. Therefore, Cry1 and Vip3 proteins were expressed in Escherichia coli, and their toxicities were evaluated based on bioassays using neonate larvae. Of those, the most toxic were Cry1Ac and Vip3Aa considering the LC50 values. Toxins from E. coli were purified, solubilized, trypsinized, and biotinylated. Brush Border Membrane Vesicles (BBMVs) were prepared from intestines of the two species to perform homologous and heterologous competition assays. The binding assays demonstrated interactions between Cry1Aa, Cry1Ac, and Vip3Aa toxins and proteins from the BBMV of D. flavipennella and E. lignosellus. Homologous competition assays demonstrated that binding to one of the BBMV proteins was specific for each toxin. Heterologous competition assays indicated that Vip3Aa was unable to compete for Cry1Ac toxin binding. Our results suggest that Cry1Ac and Vip3Aa may have potential in future production of transgenic sugarcane for control of D. flavipennella and E. lignosellus, but more research is needed on the potential antagonism or synergism of the toxins in these pests.
Extension by Conservation. Sikorski's Theorem

Constructive meaning is given to the assertion that every finite Boolean algebra is an injective object in the category of distributive lattices. To this end, we employ Scott's notion of entailment relation, in which context we describe Sikorski's extension theorem for finite Boolean algebras and turn it into a syntactical conservation result. As a by-product, we can facilitate proofs of several related classical principles.
A microsatellite marker linkage map of the housefly, Musca domestica: evidence for male recombination

We present the first molecular marker linkage map for Musca domestica containing 35 microsatellite plus six visible markers. We report the development of 33 new microsatellite markers of which 19 are included in the linkage map. Two hundred and thirty‐six F2 individuals were genotyped from three crosses yielding a linkage map consisting of five linkage groups that represent the five autosomes of the housefly. The map covers a total of 229.6 cM with an average marker spacing of 4.4 cM spanning approximately 80.2% of the genome. We found up to 29% recombination in male houseflies in contrast to most previous studies. The linkage map will add to genetic studies of the housefly.
Social-Event-Driven Camera Control for Multicharacter Animations

In a virtual world, a group of virtual characters can interact with each other, and these characters may leave a group to join another. The interaction among individuals and groups often produces interesting events in a sequence of animation. The goal of this paper is to discover social events involving mutual interactions or group activities in multicharacter animations and automatically plan a smooth camera motion to view interesting events suggested by our system or relevant events specified by a user. Inspired by sociology studies, we borrow the knowledge in Proxemics, social force, and social network analysis to model the dynamic relation among social events and the relation among the participants within each event. By analyzing the variation of relation strength among participants and spatiotemporal correlation among events, we discover salient social events in a motion clip and generate an overview video of these events with smooth camera motion using a simulated annealing optimization method. We tested our approach on different motions performed by multiple characters. Our user study shows that our results are preferred in 66.19 percent of the comparisons with those by the camera control approach without event analysis and are comparable (51.79 percent) to professional results by an artist.
Laboratory-evolved Vanadium Chloroperoxidase Exhibits 100-Fold Higher Halogenating Activity at Alkaline pH

Directed evolution was performed on vanadium chloroperoxidase from the fungus Curvularia inaequalis to increase its brominating activity at a mildly alkaline pH for industrial and synthetic applications and to further understand its mechanism. After successful expression of the enzyme in Escherichia coli, two rounds of screening and selection, saturation mutagenesis of a “hot spot,” and rational recombination, a triple mutant (P395D/L241V/T343A) was obtained that showed a 100-fold increase in activity at pH 8 (kcat = 100 s-1). The increased Km values for Br- (3.1 mm) and H2O2 (16 μm) are smaller than those found for vanadium bromoperoxidases that are reasonably active at this pH. In addition the brominating activity at pH 5 was increased by a factor of 6 (kcat = 575 s-1), and the chlorinating activity at pH 5 was increased by a factor of 2 (kcat = 36 s-1), yielding the “best” vanadium haloperoxidase known thus far. The mutations are in the first and second coordination sphere of the vanadate cofactor, and the catalytic effects suggest that fine tuning of residues Lys-353 and Phe-397, along with addition of negative charge or removal of positive charge near one of the vanadate oxygens, is very important. Lys-353 and Phe-397 were previously assigned to be essential in peroxide activation and halide binding. Analysis of the catalytic parameters of the mutant vanadium bromoperoxidase from the seaweed Ascophyllum nodosum also adds fuel to the discussion regarding factors governing the halide specificity of vanadium haloperoxidases. This study presents the first example of directed evolution of a vanadium enzyme.
Early Cambrian alkaline volcanism on the southern margin of Laurentia: evidence in the volcaniclastic units from the Puerto Blanco Formation in the Caborca block, NW Mexico

ABSTRACT Volcaniclastic units are exposed at the base of the Puerto Blanco Formation in the Caborca region, northwestern Mexico. The lower unit reveals the presence of Early Cambrian mafic volcanism in this region. It consists of a volcano-sedimentary sequence represented by tuffaceous conglomerates, agglomerates, lapillistones, tuffs, and altered mafic volcanic flows. Petrographic analysis classified the volcanic clasts as albite-sphene-calcite-actinolite granofels, with a moderate to intense hydrothermal alteration, precisely characterized by EPMA analysis. Albite-actinolite geothermometry indicates temperatures from 400 to 500°C, suggesting metamorphic conditions in the upper temperature greenschist facies. Geochemistry analysis shows a high TiO2 basic–ultrabasic volcanism that originated the volcanic clasts. Rock protoliths were studied using immobile trace elements, which classified them as OIB-type alkaline basalts with the characteristic spider hump-shaped pattern, situated in an anorogenic intracontinental tectonic setting with enriched mantle signatures. 40Ar/39Ar geochronology shows metamorphic ages of 52.58 ± 2.0 and 91.67 ± 0.55 Ma, consistent with the emplacement of Laramidic granitoids identified in the region. Possible correlations of this alkaline volcanism include the Southern Oklahoma Aulacogen and the late stages of the rifting of north western Laurentia represented in western United States.
Sport Ability Beliefs, 2 x 2 Achievement Goals, and Intrinsic Motivation

We examined whether perceived competence moderated the relationships between implicit theories, 2 x 2 achievement goals, and intrinsic motivation for sports and physical activity. We placed 309 university students into high and moderate perceived competence groups. When perceived competence was high, entity beliefs did not predict the performance-avoidance goal; yet when perceived competence was moderately low, entity beliefs did predict this goal. The mastery-avoidance goal had no relationship with intrinsic motivation when perceived competence was high, but had a significant negative relationship when perceived competence was moderately low. Our findings highlight the importance of reexamining the role of perceived competence when studying implicit beliefs and the 2 x 2 achievement goals.
Neuroadapted Yellow Fever Virus 17D: Genetic and Biological Characterization of a Highly Mouse-Neurovirulent Virus and Its Infectious Molecular Clone

ABSTRACT A neuroadapted strain of yellow fever virus (YFV) 17D derived from a multiply mouse brain-passaged virus (Porterfield YF17D) was additionally passaged in SCID and normal mice. The virulence properties of this virus (SPYF) could be distinguished from nonneuroadapted virus (YF5.2iv, 17D infectious clone) by decreased average survival time in SCID mice after peripheral inoculation, decreased average survival time in normal adult mice after intracerebral inoculation, and occurrence of neuroinvasiveness in normal mice. SPYF exhibited more efficient growth in peripheral tissues of SCID mice than YF5.2iv, resulting in a more rapid accumulation of virus burden, but with low-titer viremia, at the time of fatal encephalitis. In cell culture, SPYF was less efficient in replication than YF5.2iv in all cell lines tested. The complete nucleotide sequence of SPYF revealed 29 nucleotide substitutions relative to YF5.2iv, and these were distributed throughout the genome. There were a total of 13 predicted amino acid substitutions, some of which correspond to known differences among the Asibi, French viscerotropic virus, French neurotropic vaccine, and YF17D vaccine strains. The envelope (E) protein contained five substitutions, within all three functional domains. Substitutions were also present in regions encoding the NS1, NS2A, NS4A, and NS5 proteins and in the 3′ untranslated region (UTR). Construction of YFV harboring all of the identified coding nucleotide substitutions and those in the 3′ UTR yielded a virus whose cell culture and pathogenic properties, particularly neurovirulence and neuroinvasiveness for SCID mice, generally resembled those of the original SPYF isolate. These findings implicate the E protein and possibly other regions of the genome as virulence determinants during pathogenesis of neuroadapted YF17D virus in mice. The determinants affect replication efficiency in both neural and extraneural tissues of the mouse and confer some limited host-range differences in cultured cells of nonmurine origin.
Ochratoxin A and β2-Microglobulin in BEN Patients and Controls

Ochratoxin A (OTA) is a mycotoxin naturally occurring in different foods. OTA is arguably a risk factor for Balkan endemic nephropathy (BEN). The aims of this study are to (1) test the OTA-BEN association in BEN-groups and controls and (2) determine whether urine β2-microglobulin, a marker of impaired ability of the kidneys to re-absorb, is related to OTA. BEN patients had significantly higher OTA serum levels. Within the offspring, OTA was significantly related to higher β2-microglobulin excretion. OTA (2005/2006) was related to a higher incidence of BEN after 2008, providing further evidence that OTA is a risk factor for BEN.
The cdc2Ms Kinase Is Differently Regulated in the Cytoplasm and in the Nucleus

To study a cyclin-dependent kinase (CDK) from alfalfa (Medicago sativa L.), an antibody was raised against the C-terminal 16 amino acids of the protein cdc2aMs. The cdc2Ms protein was immunopurified with this antibody and its histone kinase activity was measured. The cdc2Ms kinase is activated at the G1/S transition when phosphate-starved cells from the G0 phase re-enter the cell cycle and remain active as cells transit the S, G2, and M phases, indicating that the same CDK regulates all of these phases in alfalfa. In contrast, when cdc2Ms kinase was purified by binding to p13suc1, it was active only in the G2 and M phases. In immunoblots the C-terminal antibody detected an equal amount of the cdc2Ms protein in the cytoplasm and in the nucleus. By indirect immunofluorescence, however, the cytoplasmic form of cdc2Ms could not be found in the S phase of the cells, indicating that the epitope for the cdc2 antibody is not accessible. Binding of putative inhibitor proteins to cdc2 was shown by inactivation of purified plant CDK when cell extracts were added. Furthermore, purified CDK inhibitors, such as the mouse p27kip1 and the yeast p40sic1, blocked the purified plant CDK activity.
Identification and Extraction of Family History Information from Clinical Reports

Many clinical reports contain family history, which is valuable information for clinical decision support and research. We developed a simple natural language processing algorithm to identify and extract family histories. The algorithm was tested on a set of discharge summaries and outpatient clinic notes. The precision and recall of extracting all diagnoses were 85.12% and 86.93%, respectively. The precision and recall of differentiating family history from patient history diagnoses were 96.30% and 92.86%, respectively. Both the precision and recall of exact family member assignment were 92.31%.
A database of fish biotransformation rates for organic chemicals

Biotransformation is a key process that can mitigate the bioaccumulation potential of organic substances and is an important parameter for exposure assessments. A recently published method for estimating whole‐body in vivo metabolic biotransformation rate constants (kM) is applied to a database of measured laboratory bioconcentration factors and total elimination rate constants for fish. The method uses a kinetic mass balance model to estimate rates of chemical uptake and elimination when measured values are not reported. More than 5,400 measurements for more than 1,000 organic chemicals were critically reviewed to compile a database of 1,535 kM estimates for 702 organic chemicals. Biotransformation rates range over six orders of magnitude across a diverse domain of chemical classes and structures. Screening‐level uncertainty analyses provide guidance for the selection and interpretation of kM values. In general, variation in kM estimates from different routes of exposure (water vs diet) and between fish species is approximately equal to the calculation uncertainty in kM values. Examples are presented of structure–biotransformation relationships. Biotransformation rate estimates in the database are compared with estimates of biodegradation rates from existing quantitative structure–activity relationship models. Modest correlations are found, suggesting some consistency in biotransformation capabilities between fish and microorganisms. Additional analyses to further explore possible quantitative structure–biotransformation relationships for estimating kM from chemical structure are encouraged, and recommendations for improving the database are provided.
Truthful Scheduling Mechanisms for Powering Mobile Crowdsensing

Mobile crowdsensing leverages mobile devices (e.g., smart phones) and human mobility for pervasive information exploration and collection; it has been deemed as a promising paradigm that will revolutionize various research and application domains. Unfortunately, the practicality of mobile crowdsensing can be crippled due to the lack of incentive mechanisms that stimulate human participation. In this paper, we study incentive mechanisms for a novel Mobile Crowdsensing Scheduling (MCS) problem, where a mobile crowdsensing application owner announces a set of sensing tasks, then human users (carrying mobile devices) compete for the tasks based on their respective sensing costs and available time periods, and finally the owner schedules as well as pays the users to maximize its own sensing revenue under a certain budget. We prove that the MCS problem is NP-hard and propose polynomial-time approximation mechanisms for it. We also show that our approximation mechanisms (including both offline and online versions) achieve desirable game-theoretic properties, namely truthfulness and individual rationality, as well as O(1) performance ratios. Finally, we conduct extensive simulations to demonstrate the correctness and effectiveness of our approach.
Finding topic trends in digital libraries

We propose a generative model based on latent Dirichlet allocation for mining distinct topics in document collections by integrating the temporal ordering of documents into the generative process. The document collection is divided into time segments where the discovered topics in each segment is propagated to influence the topic discovery in the subsequent time segments. We conduct experiments on the collection of academic papers from CiteSeer repository. We augment the text corpus with the addition of user queries and tags and integrate the citation graph to boost the weight of the topical terms. The experiment results show that segmented topic model can effectively detect distinct topics and their evolution over time.
How Isotropic is the Universe?

A fundamental assumption in the standard model of cosmology is that the Universe is isotropic on large scales. Breaking this assumption leads to a set of solutions to Einstein's field equations, known as Bianchi cosmologies, only a subset of which have ever been tested against data. For the first time, we consider all degrees of freedom in these solutions to conduct a general test of isotropy using cosmic microwave background temperature and polarization data from Planck. For the vector mode (associated with vorticity), we obtain a limit on the anisotropic expansion of (σ_{V}/H)_{0}<4.7×10^{-11} (95% C.L.), which is an order of magnitude tighter than previous Planck results that used cosmic microwave background temperature only. We also place upper limits on other modes of anisotropic expansion, with the weakest limit arising from the regular tensor mode, (σ_{T,reg}/H)_{0}<1.0×10^{-6} (95% C.L.). Including all degrees of freedom simultaneously for the first time, anisotropic expansion of the Universe is strongly disfavored, with odds of 121 000:1 against.