Miracle-dz/UniFAR-FTUs huggingface dataset:
Successful Non-Surgical Deep Uterine Transfer of Porcine Morulae after 24 Hour Culture in a Chemically Defined Medium

Excellent fertility and prolificacy have been reported after non-surgical deep uterine transfers of fresh in vivo-derived porcine embryos. Unfortunately, when this technology is used with vitrified embryos, the reproductive performance of recipients is low. For this reason and because the embryos must be stored until they are transferred to the recipient farms, we evaluated the potential application of non-surgical deep uterine transfers with in vivo-derived morulae cultured for 24 h in liquid stage. In Experiment 1, two temperatures (25°C and 37°C) and two media (one fully defined and one semi-defined) were assessed. Morulae cultured in culture medium supplemented with bovine serum albumin and fetal calf serum at 38.5°C in 5% CO2 in air were used as controls. Irrespective of medium, the embryo viability after 24 h of culture was negatively affected (P<0.05) at 25°C but not at 37°C compared with the controls. Embryo development was delayed in all experimental groups compared with the control group (P<0.001). Most of the embryos (95.7%) cultured at 37°C achieved the full or expanded blastocyst stage, and unlike the controls, none of them hatched at the end of culture. In Experiment 2, 785 morulae were cultured in the defined medium at 37°C for 24 h, and the resulting blastocysts were transferred to the recipients (n = 24). Uncultured embryos collected at the blastocyst stage (n = 750) were directly transferred to the recipients and used as controls (n = 25). No differences in farrowing rates (91.7% and 92.0%) or litter sizes (9.0±0.6 and 9.4±0.8) were observed between the groups. This study demonstrated, for the first time, that high reproductive performance can be achieved after non-surgical deep uterine transfers with short-term cultured morulae in a defined medium, which opens new possibilities for the sanitary, safe national and international trade of porcine embryos and the commercial use of embryo transfer in pigs.
Early Triassic Archosaur-Dominated Footprint Assemblage from the Argana Basin (Western High Atlas, Morocco)

An assemblage of abundant and well-preserved tetrapod footprints has been discovered in the Tanamert Member (T3) of the Triassic Timezgadiouine Formation (Argana basin, western High Atlas, Morocco). It is the first fossil record from T3. Surfaces from different localities show a uniform tetrapod ichnofauna that consists of chirotherian and small lacertoid forms. The chirotherians are assigned to the plexus Protochirotherium—Synaptichnium, their trackmakers interpreted as basal archosaurs. The lacertoid imprints show close affinities with Rhynchosauroides and may reflect archosauromorphs or lepidosauromorphs. Protochirotherium—Synaptichnium assemblages are characteristic of the Early Triassic and were known previously only from units of this age in central Europe. Biostratigraphically, the European record implies a wide-spread pre-Anisian Protochirotherium—Synaptichnium dominated assemblage preceding the first appearance of Chirotherium barthii near the Olenekian-Anisian boundary. The stratigraphic position of T3 between Late Permian (uppermost T2) and Middle Triassic (T4) and the European correlatives suggest an Early Triassic age of this unit. It is the first record of Early Triassic continental deposits in Morocco. The surfaces from T3 open up perspectives for further contributions to ecology, biogeography and locomotion of early archosaurs. Furthermore, excellent outcrops and quality of footprint preservation in the Argana basin offer a potential for clarification of ichnotaxonomic and biostratigraphic issues.
Alteration of Oriented Deposition of Cellulose Microfibrils by Mutation of a Katanin-Like Microtubule-Severing Protein Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.003947.

It has long been hypothesized that cortical microtubules (MTs) control the orientation of cellulose microfibril deposition, but no mutants with alterations of MT orientation have been shown to affect this process. We have shown previously that in Arabidopsis, the fra2 mutation causes aberrant cortical MT orientation and reduced cell elongation, and the gene responsible for the fra2 mutation encodes a katanin-like protein. In this study, using field emission scanning electron microscopy, we found that the fra2 mutation altered the normal orientation of cellulose microfibrils in walls of expanding cells. Although cellulose microfibrils in walls of wild-type cells were oriented transversely along the elongation axis, cellulose microfibrils in walls of fra2 cells often formed bands and ran in different directions. The fra2 mutation also caused aberrant deposition of cellulose microfibrils in secondary walls of fiber cells. The aberrant orientation of cellulose microfibrils was shown to be correlated with disorganized cortical MTs in several cell types examined. In addition, the thickness of both primary and secondary cell walls was reduced significantly in the fra2 mutant. These results indicate that the katanin-like protein is essential for oriented cellulose microfibril deposition and normal cell wall biosynthesis. We further demonstrated that the Arabidopsis katanin-like protein possessed MT-severing activity in vitro; thus, it is an ortholog of animal katanin. We propose that the aberrant MT orientation caused by the mutation of katanin results in the distorted deposition of cellulose microfibrils, which in turn leads to a defect in cell elongation. These findings strongly support the hypothesis that cortical MTs regulate the oriented deposition of cellulose microfibrils that determines the direction of cell elongation.
Counterpoint: Clinical Islet Transplantation: Not Ready for Prime Time

β-Cell replacement therapy's great promise is that it can safely and effectively restore insulin-independent euglycemia to individuals with diabetes. Although difficult and expensive, modern insulin-based treatment for type 1 diabetes has lead to remarkable improvements in disease prognosis (1–3). Based on recent population-based epidemiological studies, we have estimated that an individual diagnosed with type 1 diabetes today faces an excess mortality over the next 20 years of ∼2% or ∼0.1% per year (4). Even individuals with long-standing type 1 diabetes sufficiently problematic to be listed for a pancreas transplant have an annual mortality <2.0% per year (5). The perceived weaknesses associated with intensive insulin therapy are its cost estimated in 1996 to be 116,000 USD over a lifetime (6) and its inconvenience requiring meticulous attention to diet, exercise, frequent daily blood glucose measurements, and multiple daily injections. In addition, insulin therapy carries with it an increased risk of serious hypoglycemia (1). We attempt to address whether current β-cell replacement therapies overcome the shortcomings associated with medical management. Certainly, β-cell replacement therapy should not increase the subjects' risk above that associated with standard clinical care. For patients with type 1 diabetes and end-stage kidney disease, simultaneous pancreas-kidney (SPK) transplantation has appropriately achieved standard of care status. SPK recipients can reasonably expect improved and sustained insulin-independent metabolic control, and the surgery demonstrably improves survival rates compared with those medically treated (5). However, the options are much less clear for subjects with long-standing diabetes and preserved kidney function defined as a serum creatinine <2.0 mg/dl. (And with modern therapies, an ever-decreasing minority will develop renal failure.) For such patients, pancreas transplant alone (PTA) or pancreas-after-kidney (PAK) transplantation, despite reasonable insulin-independence rates, does not improve survival and may even increase mortality (5). The underlying cause of the apparent excess mortality post–pancreas transplantation …
Rock resistance to erosion: Some further considerations

Rock resistance to erosion is an often described factor in geomorphic studies, and is generally considered to strongly influence the shape of erosional landforms. However, the property of the rock mass that enables it to resist erosion is rarely considered, and its measurement is rarely justified and assessed adequately. Allison (1988, 1990) examined the intact strength properties of several types of carbonate rocks and considered that dynamic Young's modulus is a good indicator of rock material strength for geomorphic purposes, and cast doubts on the reliability of Schmidt hammer tests for this purpose. Alternative approaches to rock characterization from the view point of evaluating rock intact strength are considered.
A Comprehensive Diagnosis Methodology for Complex Hybrid Systems: A Case Study on Spacecraft Power Distribution Systems

The application of model-based diagnosis schemes to real systems introduces many significant challenges, such as building accurate system models for heterogeneous systems with complex behaviors, dealing with noisy measurements and disturbances, and producing valuable results in a timely manner with limited information and computational resources. The Advanced Diagnostics and Prognostics Testbed (ADAPT), which was deployed at the NASA Ames Research Center, is a representative spacecraft electrical power distribution system that embodies a number of these challenges. ADAPT contains a large number of interconnected components, and a set of circuit breakers and relays that enable a number of distinct power distribution configurations. The system includes electrical dc and ac loads, mechanical subsystems (such as motors), and fluid systems (such as pumps). The system components are susceptible to different types of faults, i.e., unexpected changes in parameter values, discrete faults in switching elements, and sensor faults. This paper presents Hybrid Transcend, which is a comprehensive model-based diagnosis scheme to address these challenges. The scheme uses the hybrid bond graph modeling language to systematically develop computational models and algorithms for hybrid state estimation, robust fault detection, and efficient fault isolation. The computational methods are implemented as a suite of software tools that enable diagnostic analysis and testing through simulation, diagnosability studies, and deployment on the experimental testbed. Simulation and experimental results demonstrate the effectiveness of the methodology.
Microprocessor power estimation using profile-driven program synthesis

This paper presents a new approach for estimating power dissipation in a high performance microprocessor chip. A characteristic profile (including parameters such as the cache miss rate, branch-prediction miss rate, pipeline stalls, instruction mix, and so on) is first extracted from the application programs. Mixed-integer linear-programming and heuristic rules are then used to gradually transform a generic program template into a fully functional program. The synthesized program exhibits the same characteristics (and hence the same performance and power-dissipation behavior), yet it has an instruction trace that is orders of magnitude smaller than the initial trace. The synthesized program is subsequently simulated on a register-transfer-level description of the target microprocessor to provide the power-dissipation value. Results obtained for Intel's Pentium processor executing standard benchmark programs show a simulation-time reduction of three to five orders of magnitude.
Extra-planar H I in the starburst galaxy NGC 253

Observations of the nearby starburst galaxy NGC 253 in the 21-cm line reveal the presence of neutral hydrogen in the halo, up to 12 kpc from the galactic plane. This extra-planar H  is found in only one half of the galaxy and is concentrated in a half-ring structure and plumes which are lagging in rotation with respect to the disk. The H  plumes are seen bordering the bright Hα and X-ray halo emission. It is likely that, as proposed earlier for the Hα and the X-rays, the origin of the extra-planar H  is also related to the central starburst and to the active star formation in the disk. A minor merger and gas accretion are also discussed as possible explanations. The H  disk is less extended than the stellar disk. This may be the result of ionization of its outer parts or, alternatively, of tidal or ram pressure stripping.
Health-related quality of life, employment and disability in patients with Sjogren's syndrome.

OBJECTIVE To compare health-related quality of life (HR-QOL), employment and disability of primary and secondary SS (pSS and sSS, respectively) patients with the general Dutch population. METHODS HR-QOL, employment and disability were assessed in SS patients regularly attending the University Medical Center Groningen (n = 235). HR-QOL, employment and disability were evaluated with the Short Form-36 questionnaire (SF-36) and an employment and disability questionnaire. Results were compared with Dutch population data (matched for sex and age). Demographical and clinical data associated with HR-QOL, employment and disability were assessed. RESULTS Response rate was 83%. SS patients scored lower on HR-QOL than the general Dutch population. sSS patients scored lower on physical functioning, bodily pain and general health than pSS patients. Predictors for reduced HR-QOL were fatigue, tendomyalgia, articular involvement, use of artificial saliva, use of anti-depressants, comorbidity, male sex and eligibility for disability compensation (DC). Employment was lower and DC rates were higher in SS patients compared with the Dutch population. CONCLUSION SS has a large impact on HR-QOL, employment and disability.
Hypertension, Transmural Pressure, and Vascular Smooth Muscle Response in Rats

The effect of transmural pressure on the responsiveness of vascular smooth muscle was studied using rats with chronic occlusion of one external iliac artery. The arterial pressure in the occluded leg was reduced to approximately half of that in the contralateral unoccluded leg. Helical strips from the low- and high-pressure femoral arteries of spontaneously hypertensive rats and rats with deoxycorticosterone acetate-induced (DOCA) hypertension were compared with corresponding tissues from normotensive controls. The sensitivity of both low- and high-pressure artery strips from the spontaneusly hypertensive rat was greater than that of control? when strontium or lanthanum was used as the agonist. The sensitivity of strips from both low- and high-pressure arteries from the DOCA-hypertensive rat was greater than that of controls when potassium, epinephrine, or calcium was the agonist. There was no difference in sensitivity between strips from the low- and high-pressure arteries in any group of rats. Maximum contractile force (contractility) was reduced in femoral artery strips from both legs of all hypertensive rats. The KCl-induced contraction of vascular smooth muscle from both femoral arteries of either form of hypertensive rat was not as readily depressed by high calcium concentrations as was that from the normotensive rat. Changes in sensitivity and contractility associated with hypertension could not be reversed by lowering blood pressure in one leg of a spontaneously hypertensive rat or prevented by protecting one leg from high pressure prior to the induction of DOCA hypertension. The altered sensitivity and contractility of arterial strips in these models of hypertension are not, then, secondary to the increase in wall stress.
Transmit Precoding in a Noncoherent Relay Channel With Channel Mean Feedback

This paper investigates the optimal source transmit precoding to maximize the ergodic mutual information between the input and the output of a noncoherent amplify-and-forward relay channel, with multiple antennas at the source and with a single antenna at both the relay and the destination. It is assumed that only the source-relay channel mean information is available at the source. The challenge here is that relaying introduces a nonconvex structure in the objective function. Therefore, previous methods dealing with channel mean feedback, which generally require the concavity of the objective function, cannot be applied. To circumvent the difficulty at hand, a different approach based on stochastic ordering is employed. The stochastic optimization problem here is ultimately transformed into the comparison of two nonnegative random variables in the Laplace transform order. It is shown that the optimal source transmit strategy is to transmit along the known channel mean and its orthogonal eigen-channels. Our result subsumes as an asymptotic case the optimal precoding for multiple-input single-output (MISO) channels without relaying under mean feedback. Furthermore, the analysis can be partially extended to the case with multiple antennas at the relay. Numerical examples are provided to complement and corroborate the analysis.
Strontium isotope composition of skeletal material can determine the birth place and geographic mobility of humans and animals.

The Sr isotope composition measured in skeletal elements (e.g., bone, teeth, or antlers) can be used to infer the geographic region that an animal or human inhabited, because different regions tend to have distinct Sr isotope compositions, and natural variations in the relative abundance of Sr isotopes are not changed as Sr is processed through the food chain. Therefore, an organism that ingests Sr from one region can have a Sr isotope composition that is different than that of an organism that ingests Sr from another region. The Sr isotope composition of skeletal elements is a reflection of the concentration-weighted average of dietary Sr that was ingested while that skeletal element was produced. Because different skeletal elements grow and exchange Sr at different stages during the life times of organisms, Sr isotope analysis of different skeletal elements can be used to infer changes in geographic location at different stages in an organism's life. The Sr isotope composition measured in human teeth will reflect the average Sr isotope composition that was ingested as a child, due to the immobile nature of Sr and Ca in teeth after formation, whereas the Sr isotope composition of bone will reflect the average isotopic composition over the last ten years of life, due to continuous biological processing of Sr and Ca in bone. Inferring the average isotopic composition of dietary Sr is best done by analyzing skeletal fragments from control groups, which might be animals that have the same feeding habits as the animal in question, or, in the case of humans, analysis of close family relatives. In cases where it is not possible to construct a Sr isotope database from control groups, it becomes necessary to estimate the isotopic composition of dietary Sr based on geologic principles. We present three case studies from our research that illustrate a range of approaches: (1) results from a criminal case where a deer was illegally harvested and the location of the deer was important to establish, (2) a pilot study of commingled human remains from a burial in Vietnam, associated with the Vietnam Conflict, and (3) a study of 13th and 14th century migration of peo ple from an archeological site in the Southwest United States.
Failure of Isoflurane Cardiac Preconditioning in Obese Type 2 Diabetic Mice Involves Aberrant Regulation of MicroRNA-21, Endothelial Nitric-oxide Synthase, and Mitochondrial Complex I

Background: Diabetes impairs the cardioprotective effect of volatile anesthetics, yet the mechanisms are still murky. We examined the regulatory effect of isoflurane on microRNA-21, endothelial nitric-oxide synthase, and mitochondrial respiratory complex I in type 2 diabetic mice. Methods: Myocardial ischemia/reperfusion injury was produced in obese type 2 diabetic (db/db) and C57BL/6 control mice ex vivo in the presence or absence of isoflurane administered before ischemia. Cardiac microRNA-21 was quantified by real-time quantitative reverse transcriptional–polymerase chain reaction. The dimers and monomers of endothelial nitric-oxide synthase were measured by Western blot analysis. Mitochondrial nicotinamide adenine dinucleotide fluorescence was determined in Langendorff-perfused hearts. Results: Body weight and fasting blood glucose were greater in db/db than C57BL/6 mice. Isoflurane decreased left ventricular end-diastolic pressure from 35 ± 8 mmHg in control to 23 ± 9 mmHg (P = 0.019, n = 8 mice/group, mean ± SD) and elevated ±dP/dt 2 h after post-ischemic reperfusion in C57BL/6 mice. These beneficial effects of isoflurane were lost in db/db mice. Isoflurane elevated microRNA-21 and the ratio of endothelial nitric-oxide synthase dimers/monomers and decreased mitochondrial nicotinamide adenine dinucleotide levels 5 min after ischemia in C57BL/6 but not db/db mice. MicroRNA-21 knockout blocked these favorable effects of isoflurane, whereas endothelial nitric-oxide synthase knockout had no effect on the expression of microRNA-21 but blocked the inhibitory effect of isoflurane preconditioning on nicotinamide adenine dinucleotide. Conclusions: Failure of isoflurane cardiac preconditioning in obese type 2 diabetic db/db mice is associated with aberrant regulation of microRNA-21, endothelial nitric-oxide synthase, and mitochondrial respiratory complex I.
Remarks on Hamilton's Compactness Theorem for Ricci flow

A fundamental tool in the analysis of Ricci flow is a compactness result of Hamilton in the spirit of the work of Cheeger, Gromov and others. Roughly speaking it allows one to take a sequence of Ricci flows with uniformly bounded curvature and uniformly controlled injectivity radius, and extract a subsequence that converges to a complete limiting Ricci flow. A widely quoted extension of this result allows the curvature to be bounded uniformly only in a local sense. However, in this note we give a counterexample.
Quantitative spinal cord MRI in radiologically isolated syndrome

Objectives To assess whether quantitative spinal cord MRI (SC-MRI) measures, including atrophy, and diffusion tensor imaging (DTI) and magnetization transfer imaging metrics were different in radiologically isolated syndrome (RIS) vs healthy controls (HCs). Methods Twenty-four participants with RIS and 14 HCs underwent cervical SC-MRI on a 3T magnet. Manually segmented regions of interest circumscribing the spinal cord cross-sectional area (SC-CSA) between C3 and C4 were used to extract SC-CSA, fractional anisotropy, mean, perpendicular, and parallel diffusivity (MD, λ⊥, and λ||) and magnetization transfer ratio (MTR). Spinal cord (SC) lesions, SC gray matter (GM), and SC white matter (WM) areas were also manually segmented. Multivariable linear regression was performed to evaluate differences in SC-MRI measures in RIS vs HCs, while controlling for age and sex. Results In this cross-sectional study of participants with RIS, 71% had lesions in the cervical SC. Of quantitative SC-MRI metrics, spinal cord MTR showed a trend toward being lower in RIS vs HCs (p = 0.06), and there was already evidence of brain atrophy (p = 0.05). There were no significant differences in SC-DTI metrics, GM, WM, or CSA between RIS and HCs. Conclusion The SC demonstrates minimal microstructural changes suggestive of demyelination and inflammation in RIS. These findings are in contrast to established MS and raise the possibility that the SC may play an important role in triggering clinical symptomatology in MS. Prospective follow-up of this cohort will provide additional insights into the role the SC plays in the complex sequence of events related to MS disease initiation and progression.