Miracle-dz/UniFAR-FTUs huggingface dataset:
Solution structure of the lymphocyte receptor Nkrp1a reveals a distinct conformation of the long loop region as compared to in the crystal structure

Mouse Nkrp1a receptor is a C‐type lectin‐like receptor expressed on the surface of natural killer cells that play an important role against virally infected and tumor cells. The recently solved crystal structure of Nkrp1a raises questions about a long loop region which was uniquely extended from the central region in the crystal. To understand the functional significance of the loop, the solution structure of Nkrp1a using nuclear magnetic resonance (NMR) spectroscopy was determined. A notable difference between the crystal and NMR structure of Nkrp1a appears in the conformation of the long loop region. While the extended loop points away from the central core and mediates formation of a domain swapped dimer in the crystal, the solution structure is monomeric with the loop tightly anchored to the central region. The findings described the first solution structure in the Nkrp1 family and revealed intriguing similarities and differences to the crystal structure. Proteins 2016; 84:1304–1311. © 2016 Wiley Periodicals, Inc.
DYNAMIC STIFFNESS FORMULATION FOR BEAMS UNDERGOING FREE TRANSVERSE AND LATERAL VIBRATION WITH TORSIONAL COUPLING

The free vibration of beams whose flexural motions in both principal planes are coupled with torsion is investigated in this paper by using the method of dynamic stiffness matrix. Starting from the derivation of the governing differential equations of motion in free vibration and their subsequent solutions, the dynamic stiffness matrix of a bending-torsional coupled beam in three dimension is developed. This is achieved by relating the amplitudes of harmonically varying forces with those of the displacements at the ends of the beam. The resulting dynamic stiffness matrix is applied with particular reference to the Wittrick-William algorithm when carrying out the free vibration analysis. The theory is demonstrated by numerical results. This is followed by some conclusions.
Dopamine System Dysregulation in Major Depressive Disorders

Abstract Anhedonia is considered a core feature of major depressive disorder, and the dopamine system plays a pivotal role in the hedonic deficits described in this disorder. Dopaminergic activity is complex and under the regulation of multiple brain structures, including the ventral subiculum of the hippocampus and the basolateral amygdala. Whereas basic and clinical studies demonstrate deficits of the dopaminergic system in depression, the origin of these deficits likely lies in dysregulation of its regulatory afferent circuits. This review explores the current information regarding the afferent modulation of the dopaminergic system and its relevance to major depressive disorder, as well as some of the system-level effects of novel antidepressants such as agomelatine and ketamine.
Diffusion Boundary Layers Ameliorate the Negative Effects of Ocean Acidification on the Temperate Coralline Macroalga Arthrocardia corymbosa

Anthropogenically-modulated reductions in pH, termed ocean acidification, could pose a major threat to the physiological performance, stocks, and biodiversity of calcifiers and may devalue their ecosystem services. Recent debate has focussed on the need to develop approaches to arrest the potential negative impacts of ocean acidification on ecosystems dominated by calcareous organisms. In this study, we demonstrate the role of a discrete (i.e. diffusion) boundary layer (DBL), formed at the surface of some calcifying species under slow flows, in buffering them from the corrosive effects of low pH seawater. The coralline macroalga Arthrocardia corymbosa was grown in a multifactorial experiment with two mean pH levels (8.05 ‘ambient’ and 7.65 a worst case ‘ocean acidification’ scenario projected for 2100), each with two levels of seawater flow (fast and slow, i.e. DBL thin or thick). Coralline algae grown under slow flows with thick DBLs (i.e., unstirred with regular replenishment of seawater to their surface) maintained net growth and calcification at pH 7.65 whereas those in higher flows with thin DBLs had net dissolution. Growth under ambient seawater pH (8.05) was not significantly different in thin and thick DBL treatments. No other measured diagnostic (recruit sizes and numbers, photosynthetic metrics, %C, %N, %MgCO3) responded to the effects of reduced seawater pH. Thus, flow conditions that promote the formation of thick DBLs, may enhance the subsistence of calcifiers by creating localised hydrodynamic conditions where metabolic activity ameliorates the negative impacts of ocean acidification.
The Challenge of Living On: Psychopathology and Its Mediating Influence on the Readjustment of Former Child Soldiers

Current civil wars are characterized by the increasing involvement of civilian populations and the systematic employment of child soldiers. An example of such wars was the conflict in Northern Uganda, where the war-affected population is still challenged by the reintegration of formerly abducted children and youths. A cross-sectional, population-based survey, using a multistage cluster sampling approach of 1,113 Northern Ugandans aged between 12 and 25 in camps for internally displaced persons and locally validated instruments was conducted to assess symptoms and diagnoses of Posttraumatic Stress Disorder (PTSD) and probable Depression in war-affected, as well as formerly abducted individuals. Further objectives were to determine predictors of psychopathology and to relate indicators of maladjustment (i.e., impairments in daily and community functioning, somatic complaints, suicidality, aggressiveness and discrimination) to abduction, level of exposure to violence and psychopathology. 43% of the sample reported abduction by the rebel army. Exposure to violence among this group was higher than for non-abducted youths (t = 28.05; p<.001). PTSD point prevalence rates were 25% among former child soldiers and 7% among the comparison group. High suicidal ideation was present in 16% and 6% respectively. A higher amount of experienced and witnessed event-types (β = . 32. p<.001), loss of first-degree relatives (β = .13. p<.001) and the number of event-types involving forced perpetration (β = .23. p<.001) were identified as risk factors of PTSD symptoms in former child soldiers. The associations between abductee-status and indicators of maladjustment were fully mediated by level of trauma exposure and psychopathology. Results show that child soldiering and its psychological sequelae affect a substantial proportion of children and youths. After release or flight, their readjustment depends at least partly on their level of mental traumatization.
Executive Functioning in Highly Talented Soccer Players

Executive functions might be important for successful performance in sports, particularly in team sports requiring quick anticipation and adaptation to continuously changing situations in the field. The executive functions motor inhibition, attention and visuospatial working memory were examined in highly talented soccer players. Eighty-four highly talented youth soccer players (mean age 11.9), and forty-two age-matched amateur soccer players (mean age 11.8) in the age range 8 to 16 years performed a Stop Signal task (motor inhibition), the Attention Network Test (alerting, orienting, and executive attention) and a visuospatial working memory task. The highly talented soccer players followed the talent development program of the youth academy of a professional soccer club and played at the highest national soccer competition for their age. The amateur soccer players played at a regular soccer club in the same geographical region as the highly talented soccer players and play in a regular regional soccer competition. Group differences were tested using analyses of variance. The highly talented group showed superior motor inhibition as measured by stop signal reaction time (SSRT) on the Stop Signal task and a larger alerting effect on the Attention Network Test, indicating an enhanced ability to attain and maintain an alert state. No group differences were found for orienting and executive attention and visuospatial working memory. A logistic regression model with group (highly talented or amateur) as dependent variable and executive function measures that significantly distinguished between groups as predictors showed that these measures differentiated highly talented soccer players from amateur soccer players with 89% accuracy. Highly talented youth soccer players outperform youth amateur players on suppressing ongoing motor responses and on the ability to attain and maintain an alert state; both may be essential for success in soccer.
Socioeconomic Factors , Urological Epidemiology and Practice Patterns Re : Vasectomy and Prostate Cancer Incidence and Mortality in a Large US Cohort

available at http://www.ncbi. nlm.nih. gov/pubmed/27646949 Editorial Comment: Patients often ask me if vasectomy increases their risk of prostate cancer. I tell them that I do not think it does and that the AUA guidelines on the topic support my view. That said, there are a number of large cohort studies that intimate there may be a relationship. There are a similar number of large studies that fail to show a relationship. The current study falls into the latter group. The authors used data from the Cancer Prevention Study-II (CPS-II), which included more than 360,000 men followed from 1982 to 2012, of whom roughly 42,000 had undergone vasectomy. Approximately 7,500 men died of prostate cancer during the study followup, and no association was seen between prostate cancer incidence or mortality and vasectomy. One of the limitations of CPS-II was that the investigators never directly asked the men if they had undergone vasectomydthey actually asked their spouses. To offset that problem, the investigators undertook a second substudy, the CPS-II Nutrition Cohort, in which they directly asked 66,542 men in CPS-II about whether they had undergone vasectomy (of which 10,589 had). Again, the authors failed to show an association between vasectomy and prostate cancer incidence or mortality. As urologists we will continue to be asked about this association, and I remain convinced that vasectomy does not increase the risk of prostate cancer or prostate cancer mortality. David F. Penson, MD, MPH Suggested Reading Sharlip ID, Belker AM, Honig S et al: Vasectomy: AUA guideline. J Urol, suppl., 2012; 188: 2482. Re: Increase in Prostate Cancer Distant Metastases at Diagnosis in the United States J. C. Hu, P. Nguyen, J. Mao, J. Halpern, J. Shoag, J. D. Wright and A. Sedrakyan Department of Urology, Weill Cornell Medicine-New York Presbyterian Hospital, Department of Healthcare Policy and Research, Weill Cornell Medicine and Department of Gynecology, Columbia College of Physicians and Surgeons, New York, New York, and Department of Radiation Oncology, Brigham and Women’s Hospital, Boston, Massachusetts JAMA Oncol 2016; Epub ahead of print. doi: 10.1001/jamaoncol.2016. 5465
Treatment of otitis media by transtympanic delivery of antibiotics

A hydrogel drug delivery system allowed controlled, local delivery of ciprofloxacin across the tympanic membrane to treat acute otitis media in chinchillas. Treatment by the earful Otitis media, commonly referred to as “ear infection,” is a ubiquitous childhood malady that accounts for many pediatrician visits and antibiotic prescriptions. Unfortunately, it is not always easy to get oral antibiotics into small children, and systemic antibiotics can cause the development of resistance and other side effects. To address these problems, Yang et al. developed a hydrogel-based system that permits delivery of antibiotics directly into the ear and demonstrated its effectiveness in a chinchilla model of nontypable Haemophilus influenzae ear infection, a common cause of otitis media. No drug was detected in the animals’ blood, confirming the specificity of this local delivery method. Otitis media is the most common reason U.S. children receive antibiotics. The requisite 7- to 10-day course of oral antibiotics can be challenging to deliver in children, entails potential systemic toxicity, and encourages selection of antimicrobial-resistant bacteria. We developed a drug delivery system that, when applied once to the tympanic membrane through the external auditory canal, delivers an entire course of antimicrobial therapy to the middle ear. A pentablock copolymer poloxamer 407–polybutylphosphoester (P407-PBP) was designed to flow easily during application and then to form a mechanically strong hydrogel on the tympanic membrane. U.S. Food and Drug Administration–approved chemical permeation enhancers within the hydrogel assisted flux of the antibiotic ciprofloxacin across the membrane. This drug delivery system completely eradicated otitis media from nontypable Haemophilus influenzae (NTHi) in 10 of 10 chinchillas, whereas only 62.5% of animals receiving 1% ciprofloxacin alone had cleared the infection by day 7. The hydrogel system was biocompatible in the ear, and ciprofloxacin was undetectable systemically (in blood), confirming local drug delivery and activity. This fast-gelling hydrogel could improve compliance, minimize side effects, and prevent systemic distribution of antibiotics in one of the most common pediatric illnesses, possibly minimizing the development of antibiotic resistance.
Mining Point Cloud Local Structures by Kernel Correlation and Graph Pooling

Unlike on images, semantic learning on 3D point clouds using a deep network is challenging due to the naturally unordered data structure. Among existing works, PointNet has achieved promising results by directly learning on point sets. However, it does not take full advantage of a point's local neighborhood that contains fine-grained structural information which turns out to be helpful towards better semantic learning. In this regard, we present two new operations to improve PointNet with a more efficient exploitation of local structures. The first one focuses on local 3D geometric structures. In analogy to a convolution kernel for images, we define a point-set kernel as a set of learnable 3D points that jointly respond to a set of neighboring data points according to their geometric affinities measured by kernel correlation, adapted from a similar technique for point cloud registration. The second one exploits local high-dimensional feature structures by recursive feature aggregation on a nearest-neighbor-graph computed from 3D positions. Experiments show that our network can efficiently capture local information and robustly achieve better performances on major datasets. Our code is available at http://www.merl. com/research/license#KCNet
Airborne Transmission of Highly Pathogenic Influenza Virus during Processing of Infected Poultry

Exposure to infected poultry is a suspected cause of avian influenza (H5N1) virus infections in humans. We detected infectious droplets and aerosols during laboratory-simulated processing of asymptomatic chickens infected with human- (clades 1 and 2.2.1) and avian- (clades 1.1, 2.2, and 2.1) origin H5N1 viruses. We detected fewer airborne infectious particles in simulated processing of infected ducks. Influenza virus–naive chickens and ferrets exposed to the air space in which virus-infected chickens were processed became infected and died, suggesting that the slaughter of infected chickens is an efficient source of airborne virus that can infect birds and mammals. We did not detect consistent infections in ducks and ferrets exposed to the air space in which virus-infected ducks were processed. Our results support the hypothesis that airborne transmission of HPAI viruses can occur among poultry and from poultry to humans during home or live-poultry market slaughter of infected poultry.
Psychiatric (Axis I) and personality (Axis II) disorders and subjective psychiatric symptoms in chronic tinnitus

Abstract Objective: Chronic tinnitus has been associated with several psychiatric disorders. Only few studies have investigated these disorders using validated diagnostic interviews. The aims were to diagnose psychiatric and personality disorders with structured interviews, to assess self-rated psychiatric symptoms and elucidate temporal relations between psychiatric disorders and tinnitus. Design: Current and lifetime DSM-IV diagnoses of axis-I (psychiatric disorders) and axis-II (personality disorders) were assessed using structured clinical interviews (SCID-I and -II). Current subjective psychiatric symptoms were evaluated via self-rating instruments: the Symptom Check List-90 (SCL-90), the Beck Depression Inventory, and the Dissociative Experiences Scale (DES). Study sample: 83 patients (mean age 51.7, 59% men) with chronic, disturbing tinnitus and a median Tinnitus Handicap Inventory score of 32. Results: The rates of lifetime and current major depression were 26.5% and 2.4%. The lifetime rate of obsessive-compulsive personality disorder (type C) was 8.4%. None of the patients had cluster B personality disorder or psychotic symptoms. The SCL-90 subscales did not differ from the general population, and median DES score was low, 2.4. Conclusions: Tinnitus patients are prone to episodes of major depression and often also have obsessive-compulsive personality features. Psychiatric disorders seem to be comorbid or predisposing conditions rather than consequences of tinnitus. Clinical trial reference: ClinicalTrials.gov (ID NCT 01929837).
Steps Towards Alcohol Misuse Prevention Programme (STAMPP): a school-based and community-based cluster randomised controlled trial

Objectives To assess the effectiveness of a combined classroom curriculum and parental intervention (the Steps Towards Alcohol Misuse Prevention Programme (STAMPP)), compared with alcohol education as normal (EAN), in reducing self-reported heavy episodic drinking (HED) and alcohol-related harms (ARHs) in adolescents. Setting 105 high schools in Northern Ireland (NI) and in Scotland. Participants Schools were stratified by free school meal provision. Schools in NI were also stratified by school type (male/female/coeducational). Eligible students were in school year 8/S1 (aged 11–12 years) at baseline (June 2012). Intervention A classroom-based alcohol education intervention, coupled with a brief alcohol intervention for parents/carers. Primary outcomes (1) The prevalence of self-reported HED in the previous 30 days and (2) the number of self-reported ARHs in the previous 6 months. Outcomes were assessed using two-level random intercepts models (logistic regression for HED and negative binomial for number of ARHs). Results At 33 months, data were available for 5160 intervention and 5073 control students (HED outcome), and 5234 and 5146 students (ARH outcome), respectively. Of those who completed a questionnaire at either baseline or 12 months (n=12 738), 10 405 also completed the questionnaire at 33 months (81.7%). Fewer students in the intervention group reported HED compared with EAN (17%vs26%; OR=0.60, 95% CI 0.49 to 0.73), with no significant difference in the number of self-reported ARHs (incident rate ratio=0.92, 95% CI 0.78 to 1.05). Although the classroom component was largely delivered as intended, there was low uptake of the parental component. There were no reported adverse effects. Conclusions Results suggest that STAMPP could be an effective programme to reduce HED prevalence. While there was no significant reduction in ARH, it is plausible that effects on harms would manifest later. Trial registration number ISRCTN47028486; Post-results.
The influence of natural and anthropic environmental variables on the structure and spatial distribution along longitudinal gradient of macroinvertebrate communities in southern Brazilian streams

Abstract Southern Brazilian rivers and streams have been intensively affected by human activities, especially agriculture and the release of untreated domestic sewage. However, data about the aquatic macroinvertebrates in these streams are scarce and limited to only certain groups. In addition, studies focusing on the structure and spatial distribution of these communities are lacking. This study analyzed the effects of natural and anthropic variables on the community structure of macroinvertebrates along a longitudinal gradient in three microbasins located in a region of landscape transition in the state of Rio Grande do Sul, Brazil. Sampling was conducted in the Vacacaí-Mirim River (August 2008) and in the Ibicuí-Mirim and Tororaipí rivers (August 2009) following an environmental gradient including 1st, 2nd, 3rd, and 4th order segments. Local natural factors that were analyzed include water temperature, pH, electrical conductivity, dissolved oxygen, substrate granulometry, and the presence of aquatic vegetation. Anthropic variables that were analyzed include including bank erosion, land use, urbanization, riparian deforestation, and fine sediments input. A total of 42 families and 129 taxa were found, with predominance of environmentally tolerant taxa. Geological context (landscape transition and large hydrographic basins) tended to influence natural environmental factors along the rivers' longitudinal gradients. However, changes in anthropic variables were not affected by these geological differences and therefore did not correlate with patterns of spatial distribution in macroinvertebrate communities. Only 1st order stream segments showed a community composition with high richness of taxa intolerant to anthropic disturbance. Richness as a whole tended to be higher in 3rd to 4th order set of segments, but this trend was a result of local anthropic environmental disturbances. Future inventories conducted in similar landscape transition regions of Brazil, for conservation purposes, must consider stream segments of different orders, microbasins, and major basins in order to obtain data that faithfully reflect the regional diversity. Additionally, it is necessary to consider environmental gradients of land use and anthropic impacts in order to suggest appropriate strategies for conserving the environmental integrity of streams.
Prophylactic versus Early Rescue Surfactant Treatment in Preterm Infants Born at Less than 30 Weeks Gestation or with Birth Weight Less than or Equal 1,250 Grams

Prophylactic surfactant is known to be effective to reduce chronic lung disease in preterm infants compared with rescue surfactant treatment. In Korea, early prophylactic surfactant therapy was introduced in 2011. However, recently, the increased utilization of antenatal steroids and early stabilization through continuous positive airway pressure (CPAP) in the delivery room may have changed the risks and benefits of prophylactic surfactant therapy of infants at high risk of respiratory distress syndrome (RDS). We compared the effects and safety of prophylactic surfactant therapy (within 30 minutes after birth) and early selective surfactant therapy (within 3 hours after birth) in preterm infants born at < 30 weeks gestation or with birth weight ≤ 1,250 g. The clinical data of 193 infants in period 1 (from 2008 to 2010, early selective surfactant therapy group) were collected retrospectively; those of 191 infants in period 2 (from 2012 to 2014, prophylactic surfactant therapy group) were collected prospectively. Compared to period 1, the rate of intubation and surfactant use were significantly increased in period 2. The use of multiple doses of surfactant in period 2 was significantly increased compared with period 1. Despite more invasive and aggressive management in period 2, there was no difference in the duration of mechanical ventilation, the incidence of bronchopulmonary dysplasia (BPD) or death, and the risk of other adverse neonatal outcomes between the 2 groups. In conclusion, the benefit of prophylactic surfactant therapy in infants treated under current practices is no longer clear compared to early selective surfactant therapy.