Miracle-dz/UniFAR-FTUs huggingface dataset:
Clinical Outcomes of Deferred Lesions With Angiographically Insignificant Stenosis But Low Fractional Flow Reserve

Background Data are limited regarding outcomes of deferred lesions in patients with angiographically insignificant stenosis but low fractional flow reserve (FFR). We investigated the natural history of angiographically insignificant stenosis with low FFR among patients who underwent routine 3‐vessel FFR measurement. Methods and Results From December 2011 to March 2014, 1136 patients with 3298 vessels underwent routine 3‐vessel FFR measurement (3V FFR‐FRIENDS study, ClinicalTrials.gov identifier NCT01621438), and this study analyzed the 2‐year clinical outcomes of 1024 patients with 2124 lesions with angiographically insignificant stenosis (percentage of diameter stenosis <50%), in which revascularization was deferred. All lesions were classified according to FFR values, using a cutoff of 0.80 (high FFR >0.80 versus low FFR ≤0.80). The primary end point was outcome of major adverse cardiovascular events (a composite of cardiac death, myocardial infarction, and ischemia‐driven revascularization) at 2 years. Mean angiographic percentage of diameter stenosis and FFR of total lesions were 32.5±10.3% and 0.91±0.08%, respectively. Among the total lesions with angiographically insignificant stenosis, 8.7% showed low FFR (185 lesions). The incidence of lesions with low FFR was 2.5%, 3.8%, 9.0%, and 15.1% in categories of percentage of diameter stenosis <20%, 20% to 30%, 30% to 40%, and 40% to 50%, respectively. At 2‐year follow‐up, the low‐FFR group showed a significantly higher risk of major adverse cardiovascular events compared with the high FFR group (3.3% versus 1.2%, hazard ratio: 3.371; 95% CI, 1.346–8.442; P=0.009). In multivariable analysis, low FFR was the most powerful independent predictor of future MACE in deferred lesions with angiographically insignificant stenosis (adjusted hazard ratio: 2.617; 95% CI, 1.026–6.679; P=0.044). Conclusions In deferred angiographically insignificant stenosis, lesions with low FFR showed significantly higher event rates than those with high FFR. FFR was an independent predictor of future major adverse cardiovascular events in lesions with angiographically insignificant stenosis. Clinical Trial Registration URL: http://www.clinicaltrials. gov. Unique identifier: NCT01621438.
Unsupervised Document Embedding With CNNs

We propose a new model for unsupervised document embedding. Leading existing approaches either require complex inference or use recurrent neural networks (RNN) that are difficult to parallelize. We take a different route and develop a convolutional neural network (CNN) embedding model. Our CNN architecture is fully parallelizable resulting in over 10x speedup in inference time over RNN models. Parallelizable architecture enables to train deeper models where each successive layer has increasingly larger receptive field and models longer range semantic structure within the document. We additionally propose a fully unsupervised learning algorithm to train this model based on stochastic forward prediction. Empirical results on two public benchmarks show that our approach produces comparable to state-of-the-art accuracy at a fraction of computational cost.
Classification of drones based on micro-Doppler signatures with dual-band radar sensors

Drone classification has become of great importance due to its increasing popularity and potential threats. The micro-Doppler signatures depending on the rotation of rotor blades allow us to differentiate various types of drones. To enhance the robustness of micro-Doppler based classification of drones, a dual band radar classification scheme is proposed in this paper. Firstly, the time-frequency spectrograms are obtained by performing the short-time Fourier Transform (STFT) on the radar data collected by K-band and X-band radar sensors respectively. Then the principal components analysis (PCA) is utilized to extract the features from the time-frequency spectrograms, and the features obtained by the two radar sensors are fused together. Finally, the classification results are obtained by using the Support Vector Machine (SVM). The experimental results show that the classification accuracy obtained by the fusion of dual-band radar sensors is higher than that obtained by using only single radar sensor.
Negotiating Violence in the Context of Transphobia and Criminalization

A growing body of international evidence suggests that sex workers face a disproportionate burden of violence, with significant variations across social, cultural, and economic contexts. Research on trans sex workers has documented high incidents of violence; however, investigations into the relationships between violence and social-structural contexts are limited. Therefore, the objective of this study was to qualitatively examine how social-structural contexts shape trans sex workers’ experiences of violence. In-depth semistructured interviews were conducted with 33 trans sex workers in Vancouver, Canada, between June 2012 and May 2013. Three themes emerged that illustrated how social-structural contexts of transphobia and criminalization shaped violent experiences: (a) transphobic violence, (b) clients’ discovery of participants’ gender identity, and (c) negative police responses to experiences of violence. The findings demonstrate the need for shifts in sex work laws and culturally relevant antistigma programs and policies to address transphobia.
Mechanism responsible for D‐transposition of the great arteries: Is this part of the spectrum of right isomerism?

D‐transposition of the great arteries (TGA) is one of the most common conotruncal heart defects at birth and is characterized by a discordant ventriculoarterial connection with a concordant atrioventricular connection. The morphological etiology of TGA is an inverted or arrested rotation of the heart outflow tract (OFT, conotruncus), by which the aorta is transposed in the right ventral direction to the pulmonary trunk. The rotational defect of the OFT is thought to be attributed to hypoplasia of the subpulmonic conus, which originates from the left anterior heart field (AHF) residing in the mesodermal core of the first and second pharyngeal arches. AHF, especially on the left, at the early looped heart stage (corresponding to Carnegie stage 10–11 in the human embryo) is one of the regions responsible for the impediment that causes TGA morphology. In human or experimentally produced right isomerism, malposition of the great arteries including D‐TGA is frequently associated. Mutations in genes involving left–right (L–R) asymmetry, such as NODAL, ACTRIIB and downstream target FOXH1, have been found in patients with right isomerism as well as in isolated TGA. The downstream pathways of Nodal‐Foxh1 play a critical role not only in L–R determination in the lateral plate mesoderm but also in myocardial specification and differentiation in the AHF, suggesting that TGA is a phenotype in heterotaxia as well as the primary developmental defect of the AHF.
TiO2 and TiO2/WO3 porous film electrodes for application in solar energy conversion

TiO2 and TiO2/WO3 porous films were deposited onto transparent conducting glass electrodes, resulting in uniform films consisted of agglomerated particles with average diameters ranging from 50 to 200 nm; Ti, O and W atoms were homogeneously distributed at the surface of hybrid film. Comparable electrochemical properties were observed in the dark, with small capacitive currents and similar potentials for O2 and H2 evolution reactions in aqueous solution. Under polychromatic irradiation, the hybrid film electrode, molar ratio WO3/TiO2 = 12 %, reveled higher photocurrent and photocatalytic activity for oxidation of phenol and 17-α-ethinylestradiol. The visible light harvesting ability of hybrid film, with band gap energy estimated as 2.3 eV, and the relative position of conduction and valence band edges that inhibits charge recombination, should improve its photocatalytic activity for organic pollutant removal.
LEAF LATERAL SYMMETRY1, a Member of the WUSCHEL-RELATED HOMEOBOX3 Gene Family, Regulates Lateral Organ Development Differentially from Other Paralogs, NARROW LEAF2 and NARROW LEAF3 in Rice

In several eudicot species, one copy of each member of the WUSCHEL-RELATED HOMEOBOX (WOX) gene family, WOX1 and WOX3, is redundantly or differentially involved in lateral leaf outgrowth, whereas only the WOX3 gene regulating the lateral domain of leaf development has been reported in grass. In this study, we show that a WOX3 gene, LEAF LATERAL SYMMETRY1 (LSY1), regulates lateral leaf development in a different manner ftom that of other duplicated paralogs of WOX3, NARROW LEAF2 (NAL2)/NAL3, in rice. A loss-of-function mutant of LSY1 exhibited an asymmetrical defect from early leaf development, which is different from a symmetric defect in a double loss-of-function mutant of NAL2/3, whereas the expression of both genes was observed in a similar domain in the margins of leaf primordia. Unlike NAL2/3, overexpression of LSY1 produced malformed leaves whose margins were curled adaxially. Expression domains and the level of adaxial/abaxial marker genes were affected in the LSY1-overexpressing plants, indicating that LSY1 is involved in regulation of adaxial-abaxial patterning at the margins of the leaf primordia. Additive phenotypes in some leaf traits of lsy1 nal2/3 triple mutants and the unchanged level of NAL2/3 expression in the lsy1 background suggested that LSY1 regulates lateral leaf development independently of NAL2/3. Our results indicated that all of the rice WOX3 genes are involved in leaf lateral outgrowth, but the functions of LSY1 and NAL2/3 have diverged. We propose that the function of WOX3 and the regulatory mode of leaf development in rice are comparable with those of WOX1/WOX3 in eudicot species.
In vitro characterization of six STUB1 variants in spinocerebellar ataxia 16 reveals altered structural properties for the encoded CHIP proteins

Spinocerebellar ataxia, autosomal recessive 16 (SCAR16) is caused by biallelic mutations in the STIP1 homology and U-box containing protein 1 (STUB1) gene encoding the ubiquitin E3 ligase and dimeric co-chaperone C-terminus of Hsc70-interacting protein (CHIP). It has been proposed that the disease mechanism is related to CHIP’s impaired E3 ubiquitin ligase properties and/or interaction with its chaperones. However, there is limited knowledge on how these mutations affect the stability, folding, and protein structure of CHIP itself. To gain further insight, six previously reported pathogenic STUB1 variants (E28K, N65S, K145Q, M211I, S236T, and T246M) were expressed as recombinant proteins and studied using limited proteolysis, size-exclusion chromatography (SEC), and circular dichroism (CD). Our results reveal that N65S shows increased CHIP dimerization, higher levels of α-helical content, and decreased degradation rate compared with wild-type (WT) CHIP. By contrast, T246M demonstrates a strong tendency for aggregation, a more flexible protein structure, decreased levels of α-helical structures, and increased degradation rate compared with WT CHIP. E28K, K145Q, M211I, and S236T also show defects on structural properties compared with WT CHIP, although less profound than what observed for N65S and T246M. In conclusion, our results illustrate that some STUB1 mutations known to cause recessive SCAR16 have a profound impact on the protein structure, stability, and ability of CHIP to dimerize in vitro. These results add to the growing understanding on the mechanisms behind the disorder.
Curcumin Inhibits Histone Deacetylase Leading to Cell Cycle Arrest and Apoptosis via Upregulation of p21 in Breast Cancer Cell Lines

ABSTRACT Curcumin was reported to modulate the expression of HDACs 1 and 2. The effect of curcumin on the expression levels of acetylated histones (H3 and H4), acetylated p53, p21, cyclinB1, and Cdk-1 were investigated in breast cancer cell lines MCF-7 and MDA-MB-231, expressing wild-type and mutated p53, respectively. Curcumin increased histone acetylation in both cell lines. Increased p53 acetylation was observed in MCF-7 but not in MDA-MB-231. Upregulation of p21 by curcumin was observed in both cell lines, leading to cell cycle arrest and apoptosis by caspase-9 induction. Curcumin therefore may be regarded as a potent epigenetic regulator in breast cancer.
Modeling Queries with Contextual Snippets for Information Retrieval

Query expansion under the pseudo-relevance feedback (PRF) framework has been extensively studied in information retrieval. However, most expansion methods are mainly based on the statistics of single terms, which can generate plenty of irrelevant query terms and decrease retrieval performance. To alleviate this problem, we propose an approach that adapts the PRF-based contextual snippets into a context-aware topic model to enhance query representations. Specifically, instead of selecting a series of independent terms, we make full use of the query contextual information and focus on the snippets with the length of n in the PRF documents. Furthermore, we propose a context-aware topic (CAT) model to mine the topic distributions of the query-relevant snippets, namely, fine contextual snippets. In contrast to the traditional topic models that infer the topics from the whole corpus, we establish a bridge between the snippets and the corresponding PRF documents, which can be used for modeling the topics more precisely and efficiently. Finally, the topic distributions of the fine snippets are used for context-aware and topic-sensitive query representations. To evaluate the performance of our approach, we integrate the obtained queries into a topic-based hybrid retrieval model and conduct extensive experiments on various TREC collections. The experimental results show that our query-modeling approach is more effective in boosting retrieval performance compared with the state-of-the-art methods.
Fibroblast growth factor (FGF) gene expression in the developing cerebellum suggests multiple roles for FGF signaling during cerebellar morphogenesis and development

The cerebellum is derived from the anterior‐most segment of the embryonic hindbrain, rhombomere 1 (r1). Previous studies have shown that the early development and patterning of r1 requires fibroblast growth factor (FGF) signaling. However, many of the developmental processes that shape cerebellar morphogenesis take place later in embryonic development and during the first 2 weeks of postnatal life in the mouse. Here, we present a more comprehensive analysis of the expression patterns of genes encoding FGF receptors and secreted FGF ligands during these later stages of cerebellar development. We show that these genes are expressed in multiple cell types in the developing cerebellum, in an astonishing array of distinct patterns. These data suggest that FGF signaling functions throughout cerebellar development to regulate many processes that shape the formation of a functional cerebellum. Developmental Dynamics, 2009. © 2009 Wiley‐Liss, Inc.
Similarity in Relationships as Niche Construction: Choice, Stability, and Influence Within Dyads in a Free Choice Environment

A series of field studies focused on the role of similarity as niche construction in friendships. Using a free-range dyad harvest method, we collected 11 independent samples with 1,523 interacting pairs, and compared dyad members’ personality traits, attitudes, values, recreational activities, and alcohol and drug use. Within-dyad similarity was statistically significant on 86% of variables measured. To determine whether similarity was primarily attributable to niche construction (i.e., selection) or social influence, we tested whether similarity increased as closeness, intimacy, discussion, length of relationship, and importance of the attitude increased. There were no effects on similarity of closeness, relationship length, or discussion of the attitude. There were quite modest effects of intimacy, and a reliable effect of the shared importance of the attitude. Because relationship length, intimacy, closeness, and discussion can all serve as markers of opportunity for, or potency of social influence, these data are consistent with the “niche construction” account of similarity. In 2 follow-up controlled longitudinal field studies, participants interacted with people they did not know from their large lecture classes, and at a later time completed a survey of attitudes, values, and personality traits. Interacting pairs were not more similar than chance, but for the 23% of dyads that interacted beyond the first meeting, there was significant similarity within dyad members. These 2 lines of inquiry converge to suggest that similarity is mainly due to niche construction, and is most important in the early stages of a relationship; its importance to further relationship development wanes.
Targeted activation of AMPK by GSK621 ameliorates H2O2-induced damages in osteoblasts

GSK621 is a novel AMP-activated protein kinase (AMPK) activator. This study tested its potential cytoprotective effect in hydrogen peroxide (H2O2)-treated osteoblasts. In cultured MC3T3-E1 osteoblastic cells and primary murine osteoblasts, GSK621 significantly attenuated H2O2-induced cell death and apoptosis. AMPK activation was required for GSK621-induced osteoblast cytoprotection. Inhibition of AMPK, by AMPKα1 T172A mutation or shRNA silence, almost completely blocked GSK621-induced osteoblast cytoprotection. Reversely, introduction of a constitutively-active AMPKα1 (T172D) alleviated H2O2 injuries in MC3T3-E1 cells. Further, GSK621 increased nicotinamide adenine dinucleotide phosphate (NADPH) content in osteoblasts to inhibit H2O2-induced reactive oxygen species (ROS) production. Meanwhile, GSK621 activated cytoprotective autophagy in the osteoblasts. On the other hand, pharmacological inhibition of autophagy alleviated GSK621-mediated osteoblast cytoprotection against H2O2. These results suggest that targeted activation of AMPK by GSK621 ameliorates H2O2-induced osteoblast cell injuries.
Short-Course Toll-Like Receptor 9 Agonist Treatment Impacts Innate Immunity and Plasma Viremia in Individuals With Human Immunodeficiency Virus Infection

Background. Treatment with latency reversing agents (LRAs) enhances human immunodeficiency virus type 1 (HIV-1) transcription in vivo but leads to only modest reductions in the size of the reservoir, possibly due to insufficient immune-mediated elimination of infected cells. We hypothesized that a single drug molecule-a novel Toll-like receptor 9 (TLR9) agonist, MGN1703-could function as an enhancer of innate immunity and an LRA in vivo. Methods. We conducted a single-arm, open-label study in which 15 virologically suppressed HIV-1-infected individuals on antiretroviral therapy received 60 mg MGN1703 subcutaneously twice weekly for 4 weeks. We characterized plasmacytoid dendritic cell, natural killer (NK), and T-cell activation using flow cytometry on baseline and after 4 weeks of treatment. HIV-1 transcription was quantified by measuring plasma HIV-1 RNA during MGN1703 administration. Results. In accordance with the cell type-specific expression of TLR9, MGN1703 treatment led to pronounced activation of plasmacytoid dendritic cells and substantial increases in plasma interferon-α2 levels (P < .0001). Consistently, transcription of interferon-stimulated genes (eg, OAS1, ISG15, Mx1; each P < .0001) were upregulated in CD4+ T cells as demonstrated by RNA sequencing. Further, proportions of activated cytotoxic NK cells and CD8+ T cells increased significantly during MGN1703 dosing, suggesting an enhancement of cellular immune responses. In 6 of 15 participants, plasma HIV-1 RNA increased from <20 copies/mL to >1500 copies/mL (range, 21-1571 copies/mL) during treatment. Conclusions. TLR9 agonist treatment in HIV infection has a dual potential by increasing HIV-1 transcription and enhancing cytotoxic NK cell activation, both of which are key outcomes in HIV-1 eradication therapy. Clinical Trials Registration. NCT02443935.
Horovod: fast and easy distributed deep learning in TensorFlow

Training modern deep learning models requires large amounts of computation, often provided by GPUs. Scaling computation from one GPU to many can enable much faster training and research progress but entails two complications. First, the training library must support inter-GPU communication. Depending on the particular methods employed, this communication may entail anywhere from negligible to significant overhead. Second, the user must modify his or her training code to take advantage of inter-GPU communication. Depending on the training library's API, the modification required may be either significant or minimal. Existing methods for enabling multi-GPU training under the TensorFlow library entail non-negligible communication overhead and require users to heavily modify their model-building code, leading many researchers to avoid the whole mess and stick with slower single-GPU training. In this paper we introduce Horovod, an open source library that improves on both obstructions to scaling: it employs efficient inter-GPU communication via ring reduction and requires only a few lines of modification to user code, enabling faster, easier distributed training in TensorFlow. Horovod is available under the Apache 2.0 license at this https URL
Detection of Pepsinogen in the Neonatal Lung and Stomach by Immunohistochemistry

Objective: Evaluate the hypothesis that the same pepsinogen C molecule produced in the stomach is also produced by the lung. Patients and Methods: Pulmonary and gastric tissues collected postmortem were immunohistochemically stained for pepsinogen C and pepsinogen A. Results: Sixteen patients with diverse causes of death were evaluated. Gestational age at birth ranged between 21 and 37 weeks. Pepsinogen A was detected in 12 of the 13 stomach sections, mainly in the chief cells, but not in any lung sections. Pepsinogen C was detected in all stomach sections in chief and mucus cells and in 9 of the 16 lung sections, mainly in type II pneumocytes. Pepsinogen C was not detected in the 3 lung cases with a gestational age <23 weeks. Conclusions: The same pepsinogen C molecule is produced in the stomach and in the lung. These findings potentially affect previous study results that used an enzymatic pepsin detection assay to evaluate for and associate gastroesophageal reflux disease with other morbidities.