Miracle-dz/UniFAR-FTUs huggingface dataset:
Fatal Attraction?: Intraguild Facilitation and Suppression Among Predators

Competition and suppression are recognized as dominant forces that structure predator communities. Facilitation via carrion provisioning, however, is a ubiquitous interaction among predators that could offset the strength of suppression. Understanding the relative importance of these positive and negative interactions is necessary to anticipate community-wide responses to apex predator declines and recoveries worldwide. Using state-sponsored wolf (Canis lupus) control in Alaska as a quasi experiment, we conducted snow track surveys of apex, meso-, and small predators to test for evidence of carnivore cascades (e.g., mesopredator release). We analyzed survey data using an integrative occupancy and structural equation modeling framework to quantify the strengths of hypothesized interaction pathways, and we evaluated fine-scale spatiotemporal responses of nonapex predators to wolf activity clusters identified from radio-collar data. Contrary to the carnivore cascade hypothesis, bothmesoand small predator occupancy patterns indicated guild-wide, negative responses of nonapex predators to wolf abundance variations at the landscape scale. At the local scale, however, we observed a near guild-wide, positive response of nonapex predators to localized wolf activity. Local-scale association with apex predators due to scavenging could lead to landscape patterns of mesopredator suppression, suggesting a key link between occupancy patterns and the structure of predator communities at different spatial scales.
Molecular analysis of parasitoid linkages (MAPL): gut contents of adult parasitoid wasps reveal larval host

Metamorphosing insects often have complex and poorly known life histories. In particular, what they feed on during their larval stages remains unknown for the vast majority of species, and its documentation only results from difficult and time‐intensive field observations, rearing or dissections. Through the application of a DNA analysis of gut contents in adult parasitoid wasps, we were able to selectively sequence a diagnostic DNA marker that permitted the identification of the host used by these wasps during their larval stages. By reproducing these results in species with different life histories, we excluded other potential sources of host DNA, confirming that after ingestion by the parasitoid larva the host DNA can persist through metamorphosis in the abdominal contents of the adult wasp. Our discovery considerably extends the applicability of molecular analysis of gut contents by enabling the documentation of food used by insects during their larval stages and thus increasing the accuracy and precision of food web studies. The 24% success rate of our approach is surprisingly high considering the challenging context for host DNA preservation, and we discuss the factors possibly affecting this rate. We propose molecular analysis of parasitoid linkages (MAPL) as a new method to document host–parasitoid associations at a faster pace and with unrivalled precision. Because of the key regulatory role of parasitoid wasps in ecosystems, which makes them the most commonly used biological control agents, MAPL will have immediate applications in both basic and applied biological sciences.
Cuckoos versus hosts in insects and birds: adaptations, counter‐adaptations and outcomes

Avian parents and social insect colonies are victimized by interspecific brood parasites—cheats that procure costly care for their dependent offspring by leaving them in another species' nursery. Birds and insects defend themselves from attack by brood parasites; their defences in turn select counter‐strategies in the parasite, thus setting in motion antagonistic co‐evolution between the two parties. Despite their considerable taxonomic disparity, here we show striking parallels in the way that co‐evolution between brood parasites and their hosts proceeds in insects and birds. First, we identify five types of co‐evolutionary arms race from the empirical literature, which are common to both systems. These are: (a) directional co‐evolution of weaponry and armoury; (b) furtiveness in the parasite countered by strategies in the host to expose the parasite; (c) specialist parasites mimicking hosts who escape by diversifying their genetic signatures; (d) generalist parasites mimicking hosts who escape by favouring signatures that force specialization in the parasite; and (e) parasites using crypsis to evade recognition by hosts who then simplify their signatures to make the parasite more detectable. Arms races a and c are well characterized in the theoretical literature on co‐evolution, but the other types have received little or no formal theoretical attention. Empirical work suggests that hosts are doomed to lose arms races b and e to the parasite, in the sense that parasites typically evade host defences and successfully parasitize the nest. Nevertheless hosts may win when the co‐evolutionary trajectory follows arms race a, c or d. Next, we show that there are four common outcomes of the co‐evolutionary arms race for hosts. These are: (1) successful resistance; (2) the evolution of defence portfolios (or multiple lines of resistance); (3) acceptance of the parasite; and (4) tolerance of the parasite. The particular outcome is not determined by the type of preceding arms race but depends more on whether hosts or parasites control the co‐evolutionary trajectory: tolerance is an outcome that parasites inflict on hosts, whereas the other three outcomes are more dependent on properties intrinsic to the host species. Finally, our review highlights considerable interspecific variation in the complexity and depth of host defence portfolios. Whether this variation is adaptive or merely reflects evolutionary lag is unclear. We propose an adaptive explanation, which centres on the relative strength of two opposing processes: strategy‐facilitation, in which one line of host defence promotes the evolution of another form of resistance, and strategy‐blocking, in which one line of defence may relax selection on another so completely that it causes it to decay. We suggest that when strategy‐facilitation outweighs strategy‐blocking, hosts will possess complex defence portfolios and we identify selective conditions in which this is likely to be the case.
L-ASPARAGINASE-AN ANTI TUMOR AGENT PRODUCTION BY FUSARIUM EQUISETI USING SOLID STATE FERMENTATION

L-asparaginase (L-asparagine amido hydrolase, E.C.3.5.1.1) is a promising chemotherapeutic agent which plays a vital role in treatment of a variety of lymphoproliferative disorders, lymphosarcoma and acute lymphoblastic leukemia in particular. An attempt is made in the present study to optimize the production of L-asparaginase by Fusarium equiseti using soya bean meal under solid state fermentation (SSF). The maximum yield of L-asparaginase (8.51 IU) was achieved with the following optimized fermentation parameters: incubation period (48 hrs), initial moisture content (70% v/w), particle size (3 mm), inoculum volume (20% v/w), supplemented with glucose (0.5% w/v), ammonium sulphate (0.5% w/v) and yeast extract (0.5% w/v).
Presence of Avibacterium paragallinarum and Histopathologic Lesions Corresponds with Clinical Signs in a Co-infection Model with Gallibacterium anatis

SUMMARY Recently we demonstrated that co-infection with Avibacterium paragallinarum and Gallibacterium anatis leads to increased severity of clinical signs of infectious coryza in birds. The present study examined the interaction of these two pathogens in chickens by evaluation of histologic lesions in sinus infraorbitalis and nasal turbinates, applying a defined scoring scheme ranging from 0 to 3. Furthermore, for the first time, an in situ hybridization (ISH) technique was applied to detect A. paragallinarum in tissues. The samples were received from vaccinated and nonvaccinated birds that were infected with A. paragallinarum and/or G. anatis. Vaccinated birds were mostly devoid of any histopathologic lesions except a few birds with lesion score 1 at 7 and 14 days postinfection (dpi). Likewise, nonvaccinated birds infected with G. anatis only did not present microscopic changes in the sinus infraorbitalis, except in a single bird at 7 dpi. Interestingly, median lesion scores caused by G. anatis infection were significantly higher in the nasal turbinates of infected birds than in negative control at 7 and 14 dpi. The most prominent histologic changes were recorded from sinus infraorbitalis and nasal turbinates of nonvaccinated birds that were infected either with A. paragallinarum only or together with G. anatis. ISH demonstrated positive signals for A. paragallinarum in exudates present in the lumen or attached to the epithelial layer of investigated tissues. Such signals were mainly detected in tissues from birds with the highest histopathologic lesion scores.
Design of amphiphilic PCL-PEG-PCL block copolymers as vehicles of Ginkgolide B and their brain-targeting studies

Abstract The amphiphilic PEG-b-PCL block copolymers were synthesized by ring-opening polymerization. The specific and selective antagonists of platelet activating factor, Ginkgolide B (GB), was successfully encapsulated in the synthesized PEG-PCL nanoparticles (NPs) with high Encapsulation Efficiency and Drug Loading. The synthesis of different PEG-PCL copolymers were confirmed with FTIR and 1H NMR spectra. The morphology and particles size distribution of cargo-free PEG-PCL NPs were studied by transmission electron microscope (TEM) analysis and Malvern laser particle analyzer. The bio-distribution and pharmacodynamics studies of GB were studied with Wistar mice as the animal models via tail injecting of GB-PEG-PCL NPs. Results from Malvern laser particle analyzer and TEM analysis illustrated that the cargo-free NPs showed narrow distribution and well separated particles size of about 60 nm in diameter. The in vitro experiment of GB-PEG-PCL NPs exhibited an extended release behavior. The bio-distribution data suggested that Tween-80 covered GB-PEG-PCL NPs showed a brain-targeting behavior. The pharmacodynamics results confirmed that the GB-PEG-PCL NPs had an obvious cerebral protection effect.
Identifying sharks with DNA barcodes: assessing the utility of a nucleotide diagnostic approach

Shark fisheries worldwide are mostly unmanaged, but the burgeoning shark fin industry in the last few decades has made monitoring catch and trade of these animals critical. As a tool for molecular species identification, DNA barcoding offers significant potential. However, the genetic distance‐based approach towards species identification employed by the Barcode of Life Data Systems may oftentimes lack the specificity needed for regulatory or legal applications that require unambiguous identification results. This is because such specificity is not typically realized by anything less than a 100% match of the query sequence to an entry in the reference database using genetic distance. Although various divergence thresholds have been proposed to define acceptable levels of intraspecific variation, enough exceptions exist to cast reasonable doubt on many less than exact matches using a distance‐based approach for the identification of unknowns. An alternative approach relies on the identification of discrete molecular characters that can be used to unambiguously diagnose species. The objective of this study was to assess the performance differences between these competing approaches by examining more than 1000 DNA barcodes representing nearly 20% of all known elasmobranch species. Our results demonstrate that a character‐based, nucleotide diagnostic (ND) approach to barcode identification is feasible and also provides novel insights into the structure of haplotype diversity among closely related species of sharks. Considerations for the use of NDs in applied fields are also explored.
Reconstruction of damaged images using Radial Basis Functions

The Radial Basis Function method (RBF) can be used not only for reconstruction of a surface from scattered data but for reconstruction of damaged images, filling gaps and for restoring missing data in images, too. The basic idea of reconstruction algorithm with RBF and very interesting results from reconstruction of images damaged by noise are presented. Feasibility of the RBF method for image processing is demonstrated.
The effects of emotion priming on visual search in socially anxious adults

ABSTRACT This study examined the effects of emotion priming on visual search in participants characterised for different levels of social anxiety. Participants were primed with five facial emotions (angry, fear, happy, neutral, and surprised) and one scrambled face immediately prior to visual search trials involving finding a slanted coloured line amongst distractors, as reaction times and accuracy to target detection were recorded. Results suggest that for individuals low in social anxiety, being primed with an angry, surprised, or fearful face facilitated visual search compared to being primed with scrambled, neutral or happy faces. However, these same emotions degraded visual search in participants with high levels of social anxiety. This study expands on previous research on the impact of emotion on attention, finding that amongst socially anxious individuals, the effects of priming with threat extend beyond initial attention capture or disengagement, degrading later visual search.
‘I was bullied too’: stories of bullying and coping in an online community

The American Academy of Pediatrics has identified bullying as a serious health risk for adolescents. In today's age of social media and smartphones, this health risk has taken on new forms and extended its reach. Strategies to reduce the prevalence of and negative consequences associated with both traditional bullying and cyberbullying require knowledge of victims' lived experiences as well as the coping strategies they employ – both effectively and ineffectively – to respond to their tormentors. This article presents findings from an in-depth content analysis of the entire set of 1094 comments from a viral blog post about cyberbullying in which people shared their personal stories of bullying and coping. These stories included a mix of both traditional and online forms of victimization, as well as more general reflections about the distinct qualities of networked publics that serve to magnify, spread, and exacerbate the effects of bullying. The findings suggest that victims of both traditional bullying and cyberbullying are often targeted because they do not conform in one way or another to mainstream norms and values. Victims employed similar coping strategies to respond to their online and offline tormentors. Common behavioral strategies included seeking social support, ignoring/blocking, and finding a creative or expressive outlet. The two most commonly cited cognitive strategies were self-talk and taking the bully's perspective. Not all strategies were judged to be effective. The findings have relevance to researchers seeking to understand bullying from the perspective of victims and to practitioners seeking to develop effective interventions to support bullying victims.
DNA barcoding of morid cods reveals deep divergence in the antitropical Halargyreus johnsoni but little distinction between Antimora rostrata and Antimora microlepis

Background and aims: DNA barcoding strongly suggests that specimens of the slender codling (Halargyreus johnsonii) from New Zealand and Tasmania belong to a different species to H. johnsonii reported from other areas. Results: Sequence divergence between the two groups averaged 3.95%, much higher than within-group divergences of 0.03 and 0.02% for specimens, respectively, from New Zealand–Tasmania and from the North Pacific, Atlantic Ocean, and Southern Ocean. Conclusion: Meristic data for specimens from New Zealand and from the Southern Ocean north of the Ross Sea support the conclusion of two species. DNA barcodes for two sister taxa, Antimora rostrata and Antimora microlepis, show low intra-species (0.3–0.06%) and inter-species (0.23%) divergence.
Junctional adhesion molecule-C regulates vascular endothelial permeability by modulating VE-cadherin–mediated cell–cell contacts

We recently reported that junctional adhesion molecule (JAM)-C plays a role in leukocyte transendothelial migration. Here, the role of JAM-C in vascular permeability was investigated in vitro and in vivo. As opposed to macrovascular endothelial cells that constitutively expressed JAM-C in cell–cell contacts, in quiescent microvascular endothelial cells, JAM-C localized mainly intracellularly, and was recruited to junctions upon short-term stimulation with vascular endothelial growth factor (VEGF) or histamine. Strikingly, disruption of JAM-C function decreased basal permeability and prevented the VEGF- and histamine-induced increases in human dermal microvascular endothelial cell permeability in vitro and skin permeability in mice. Permeability increases are essential in angiogenesis, and JAM-C blockade reduced hyperpermeability and neovascularization in hypoxia-induced retinal angiogenesis in mice. The underlying mechanisms of the JAM-C–mediated increase in endothelial permeability were studied. JAM-C was essential for the regulation of endothelial actomyosin, as revealed by decreased F-actin, reduced myosin light chain phosphorylation, and actin stress fiber formation due to JAM-C knockdown. Moreover, the loss of JAM-C expression resulted in stabilization of VE-cadherin–mediated interendothelial adhesion in a manner dependent on the small GTPase Rap1. Together, through modulation of endothelial contractility and VE-cadherin–mediated adhesion, JAM-C helps to regulate vascular permeability and pathologic angiogenesis.
High Rates of Shiny Cowbird Parasitism on The Brown-and-Yellow Marshbird Select for Complementary Host Defenses

Abstract. Hosts of brood parasites may have not developed antiparasitic defenses either because host and parasite are recently sympatric or because costs of potential defenses outweigh their benefits. We studied antiparasitic defenses of the Brown-and-yellow Marshbird (Pseudoleistes virescens) against the Shiny Cowbird (Molothrus bonariensis), evaluating recognition and aggression toward female and male Shiny Cowbirds, estimating rates of rejection of cowbird eggs of different colors, and testing the effect of the size of parasite eggs on host rejection. We also observed and video-recorded host nests to estimate hosts' nest attentiveness, frequency of cowbird visits, and interactions between marshbirds and cowbirds. When marshbirds were faced with dummy models, they attacked first and more intensively those of cowbirds (both sexes) than those of a control species. Frequency of egg ejection increased as differences between cowbird and spotted marshbird eggs increased (immaculate > intermediate > spotted), and spotted eggs were ejected more frequently when laid before than during or after the hosts' laying. Marshbirds ejected artificially added immaculate eggs independently of their size. Cowbirds visited marshbird nests only at the egg stage. Hosts' nest attention was low during egg laying and increased during incubation and after hatching, but aggressiveness against cowbirds was always high. Nest defense was inefficient, as losses due to egg pecking by cowbirds were high. Ejection of cowbird eggs avoided the cost of lower survival of marshbird nestlings in highly parasitized nests. As this defense is cost-free, this small benefit would be sufficient to select for the evolutionary maintenance of egg ejection.
Compact framework for reproducible analysis of finite wordlength effects in linear digital networks

The analysis of finite wordlength effects in linear digital networks requires specifying the exact order in which all the internal computations are performed, as well as the type and resolution of all the quantizers. Popular digital filter descriptions (difference equations, transfer function, state space representation, etc.) are unable to provide a bit-true description valid for any filter structure, thus preventing most of the results in the literature from being truly reproducible. Furthermore, the quantizers are often not properly described. In this work, we introduce a novel and compact framework to describe unambiguously any single-input single-output (SISO) linear digital network. The proposed approach is simple, efficient and guarantees the reproducibility of the results obtained for any network by allowing us to describe in detail the data flow as well as the quantization of all the coefficients and operations performed. An example of a third order Butterworth filter with four different implementations is provided to show the descriptive power and flexibility of the proposed approach.
Increased Levels of Circulating Advanced Glycation End-Products in Menopausal Women with Osteoporosis

Background: Advanced glycation end-products (AGEs) can accumulate in organs and tissues during ageing and diabetes. Increased levels of AGEs are found in the bone tissue of patients with osteoporosis. The purpose of this study was to evaluate circulating AGEs in patients with osteoporosis. Methods: We evaluated plasma AGEs, osteoporosis-related biomarkers, and bone mass in 82 menopausal women with osteoporosis or osteopenia, 16 young women with osteopenia, and 43 healthy women without osteoporosis or osteopenia. Results: Higher levels of serum AGEs were found in the osteoporosis or osteopenia group compared to healthy women (P < 0.0001). A negative correlation was observed between serum AGEs and lumbar spine bone density (BMD of lumbar spine, r = -0.249, P = 0.028; T-score of lumbar spine, r = -0.261, P = 0.021). Women with a increased level of serum AGEs (> 8.12 U/mL) had a 5.34-fold risk of osteopenia regarding lumbar spine T-score and a 3.31-fold risk of osteopenia regarding the hip T-score. Conclusion: Serum AGEs could be used to monitor the severity and progression of osteoporosis. An increased serum level of AGEs was associated with impaired bone formation and was a risk factor for the development of osteoporosis. Targeting AGEs may represent a novel therapeutic approach for primary or secondary osteoporosis.
Independent effects of relevance and arousal on deductive reasoning

ABSTRACT Emotional content can have either a deleterious or a beneficial impact on logicality. Using standard deductive-reasoning tasks, we tested the hypothesis that the interplay of two factors – personal relevance and arousal – determines the nature of the effect of emotional content on logicality. Arousal was assessed using measures of skin conductance. Personal relevance was manipulated by asking participants to reason about semantic contents linked to an emotional event that they had experienced or not. Findings showed that (1) personal relevance exerts a positive effect on logicality while arousal exerts a negative effect, and that (2) these effects are independent of each other.