Miracle-dz/UniFAR-FTUs huggingface dataset:
Active kernel learning

Identifying the appropriate kernel function/matrix for a given dataset is essential to all kernel-based learning techniques. A number of kernel learning algorithms have been proposed to learn kernel functions or matrices from side information (e.g., either labeled examples or pairwise constraints). However, most previous studies are limited to "passive" kernel learning in which side information is provided beforehand. In this paper we present a framework of Active Kernel Learning (AKL) that actively identifies the most informative pairwise constraints for kernel learning. The key challenge of active kernel learning is how to measure the informativeness of an example pair given its class label is unknown. To this end, we propose a min-max approach for active kernel learning that selects the example pair that results in a large classification margin regardless of its assigned class label. We furthermore approximate the related optimization problem into a convex programming problem. We evaluate the effectiveness of the proposed algorithm by comparing it to two other implementations of active kernel learning. Empirical study with nine datasets on semi-supervised data clustering shows that the proposed algorithm is more effective than its competitors.
Mode Switching Is the Major Mechanism of Ligand Regulation of InsP3 Receptor Calcium Release Channels

The inositol 1,4,5-trisphosphate (InsP3) receptor (InsP3R) plays a critical role in generation of complex Ca2+ signals in many cell types. In patch clamp recordings of isolated nuclei from insect Sf9 cells, InsP3R channels were consistently detected with regulation by cytoplasmic InsP3 and free Ca2+ concentrations ([Ca2+]i) very similar to that observed for vertebrate InsP3R. Long channel activity durations of the Sf9-InsP3R have now enabled identification of a novel aspect of InsP3R gating: modal gating. Using a novel algorithm to analyze channel modal gating kinetics, InsP3R gating can be separated into three distinct modes: a low activity mode, a fast kinetic mode, and a burst mode with channel open probability (P o) within each mode of 0.007 ± 0.002, 0.24 ± 0.03, and 0.85 ± 0.02, respectively. Channels reside in each mode for long periods (tens of opening and closing events), and transitions between modes can be discerned with high resolution (within two channel opening and closing events). Remarkably, regulation of channel gating by [Ca2+]i and [InsP3] does not substantially alter channel P o within a mode. Instead, [Ca2+]i and [InsP3] affect overall channel P o primarily by changing the relative probability of the channel being in each mode, especially the high and low P o modes. This novel observation therefore reveals modal switching as the major mechanism of physiological regulation of InsP3R channel activity, with implications for the kinetics of Ca2+ release events in cells.
Analysis of Risk Factors: The Rationale of the Guidelines of the Czech Hematological Society for Diagnosis and Treatment of Chronic Myeloproliferative Disorders with Thrombocythemia

The rationale of the Czech Hematological Society guidelines for diagnosis and treatment of Philadelphia chromosome-negative myeloproliferative disorders with thrombocythemia (MPD-T) is reviewed. For diagnosis of MPD-T, the classification according to the World Health Organization or to the Rotterdam criteria is preferred because they distinguish true essential thrombocythemia from prefibrotic or early fibrotic idiopathic myelofibrosis and prepolycythemic polycythemia vera. The histopathology-based nosological distinction provided by these classifications yields valuable information on prognosis (including the risks of transition into secondary acute myeloid leukemia and myelofibrosis). Another serious complication in MPD-T is thrombosis (arterial or venous), the main risk factors of which are age, previous thrombosis, platelet counts 350 to 2,200 x 10 (9)/L (peak at approximately 900 x 10 (9)/L) and the presence of additional thrombophilic risk factors (hereditary thrombophilia, any hypercoagulable state, cardiovascular disease). The hemorrhagic risk starts increasing progressively at platelet counts > 1,000 x 10 (9)/L. Treatment should be stratified with respect to the thrombotic and hemorrhagic risks. In high-risk patients, thromboreductive therapy is warranted. All of the cytostatic drugs, including hydroxyurea, may be leukemogenic and should be given only to patients > 60 years old, whereas anagrelide or interferon alpha are preferred in younger individuals. In low-risk patients, antiaggregation therapy is sufficient, unless the platelet count exceeds 1,000 x 10 (9)/L, which is another indication for thromboreduction. Thrombopheresis is indicated in thrombocythemia > 2,000 x 10 (9)/L.
A mutation in VAPB that causes amyotrophic lateral sclerosis also causes a nuclear envelope defect

Summary A proline to serine mutation (P56S) in vesicle-associated membrane protein-associated protein B and C (VAPB) causes an autosomal dominant form of amyotrophic lateral sclerosis (ALS). We show that the mutation also causes a nuclear envelope defect. Transport of nucleoporins (Nups) and emerin (EMD) to the nuclear envelope is blocked, resulting in their sequestration in dilated cytoplasmic membranes. Simultaneous overexpression of the FFAT motif (two phenylalanine residues in an acidic track) antagonizes the effect of mutant VAPB and restores transport to the nuclear envelope. VAPB function is required for transport to the nuclear envelope, with knockdown of endogenous VAPB recapitulating this phenotype. Moreover, we identified the compartment into which the Nups and EMD were sequestered as the endoplasmic reticulum (ER)–Golgi intermediate compartment (ERGIC), with nuclear envelope membrane proteins transiting to the ERGIC before VAPB-dependent retrograde transport to the nuclear envelope.
DIAGNOSIS OF TOOTH DECAY USING POLARIZED MICRO-RAMAN CONFOCAL SPECTROSCOPY *

The tooth enamel presents a Raman spectrum with strong polarization anisotropy. Carious lesions of the enamel will produce an alteration of local symmetry. This will reduce the anisotropy of the Raman spectra. Thus micro-Raman polarized spectroscopy could be a used in early detection of teeth caries.
Collagen–hyaluronic acid based interpenetrating polymer networks as tissue engineered heart valve

Currently, custom made heart implants suffer from critical imperfections in terms of mechanical incompatibility and uncontrolled degradation rate, which leads to premature in vivo failure. Interpenetrating polymer networks (IPNs) are a success story in drug delivery and regenerative medicine where they offer fascinating morphologies and tailored properties like controlled degradation rate. This review will critically discuss the current state of the art with respect to the two most important biopolymers found in heart valve, i.e. collagen and hyaluronic acid formulated IPNs as tissue engineered heart valve (TEHV). Comparison of the existing experimental approaches and recent technical challenges will be demonstrated. Finally, multifaceted proposals for improvements in design and performance of TEHVs will be presented as a route map for future research.
To Age, to Die: Parity, Evolutionary Tracking and Cole's Paradox

The existence of semelparity or “big bang” reproduction (reproducing only once in a lifetime) and iteroparity (reproducing more than once in a lifetime) has led to many questions investigating the evolution or persistence of these strategies. Here we investigate semelparity and iteroparity for their evolutionary importance. A mathematical model is used to illustrate how a population's ability to evolve depends on this life-history trait, and how this rate of evolution impacts the individual. We find that the ability of a trait to evolve is greater toward a semelparous strategy and this expresses a fitness advantage. This leads to an optimality between survival, population tracking ability, and lifetime fecundity.
Reduction of Motion Artifacts and Improvement of R Peak Detecting Accuracy Using Adjacent Non-Intrusive ECG Sensors

Non-intrusive electrocardiogram (ECG) monitoring has many advantages: easy to measure and apply in daily life. However, motion noise in the measured signal is the major problem of non-intrusive measurement. This paper proposes a method to reduce the noise and to detect the R peaks of ECG in a stable manner in a sitting arrangement using non-intrusive sensors. The method utilizes two capacitive ECG sensors (cECGs) to measure ECG, and another two cECGs located adjacent to the sensors for ECG are added to obtain the information on motion. Then, active noise cancellation technique and the motion information are used to reduce motion noise. To verify the proposed method, ECG was measured indoors and during driving, and the accuracy of the detected R peaks was compared. After applying the method, the sum of sensitivity and positive predictivity increased 8.39% on average and 26.26% maximally in the data. Based on the results, it was confirmed that the motion noise was reduced and that more reliable R peak positions could be obtained by the proposed method. The robustness of the new ECG measurement method will elicit benefits to various health care systems that require noninvasive heart rate or heart rate variability measurements.
Thermal Analysis of Municipal Sludge Waste Combustion

Municipal sludge waste combustion was studied by thermogravimetry (TG) and differential thermal analysis (DTA), to better understand the two main stages which occur during the combustion process, and to evaluate how much of the total and significant generated heat is released is during each combustion stage. A method to measure the lower heating value (LHV) on a dried basis was developed from the TG/DTA data and it was applied to the whole process and to each combustion stage. Chemical analysis of the residual products after each step shows that nitrogen organic compounds are burnt only from 350°C to 550°C, and that the organics which are released and burnt in the previous step, which begins by 150°C, present a heating value of about 32MJ/kg. The nitrogen containing compounds present a lower LHV.
Mating systems in cooperative breeders: the roles of resource dispersion and conflict mitigation

Within animal societies, the ecological and social underpinnings of mating system variation can be related to resource dispersion, sexual conflict between breeders, and the effects of non-breeders. Here, we conducted a broad-scale investigation into the evolution of mating systems in the cooperatively breeding cichlid, Neolamprologus pulcher, a species that exhibits both monogamy and polygyny within populations. Using long-term field data, we showed that polygynous groups were more spatially clustered and held by larger competitively superior males than were monogamous groups, supporting the role of resource dispersion. To explore the role of sexual conflict, we forced polygynous males to become experimentally monogamous (EM) in the field. EM males spent more time on their remaining territory than naturally polygynous males but otherwise did not change behaviorally or physiologically. Females mated to EM males performed more submissive acts, and in a forced choice experiment, females did not preferentially associate with the larger of two unmated males. Females may therefore incur an unexpected cost from mating monogamously with a large and competitively superior male, a cost that mitigates sexual conflict over the mating system. Helpers were more closely related in monogamous groups but did not behave differently under monogamy or polygyny. Helpers therefore seem neither to be affected by nor affect the mating system of breeders. Our results demonstrate the roles of resource availability and conflict mitigation in determining the mating system, and highlight the importance of experimental manipulation for revealing hidden costs of hypothetical mating patterns. Key words: cooperative breeding, mating system, monogamy, polygyny, resource dispersion, sexual conflict. [Behav Ecol]
Mechano-Coupling and Regulation of Contractility by the Vinculin Tail Domain

Vinculin binds to multiple focal adhesion and cytoskeletal proteins and has been implicated in transmitting mechanical forces between the actin cytoskeleton and integrins or cadherins. It remains unclear to what extent the mechano-coupling function of vinculin also involves signaling mechanisms. We report the effect of vinculin and its head and tail domains on force transfer across cell adhesions and the generation of contractile forces. The creep modulus and the adhesion forces of F9 mouse embryonic carcinoma cells (wild-type), vinculin knock-out cells (vinculin −/−), and vinculin −/− cells expressing either the vinculin head domain, tail domain, or full-length vinculin (rescue) were measured using magnetic tweezers on fibronectin-coated super-paramagnetic beads. Forces of up to 10 nN were applied to the beads. Vinculin −/− cells and tail cells showed a slightly higher incidence of bead detachment at large forces. Compared to wild-type, cell stiffness was reduced in vinculin −/− and head cells and was restored in tail and rescue cells. In all cell lines, the cell stiffness increased by a factor of 1.3 for each doubling in force. The power-law exponent of the creep modulus was force-independent and did not differ between cell lines. Importantly, cell tractions due to contractile forces were suppressed markedly in vinculin −/− and head cells, whereas tail cells generated tractions similar to the wild-type and rescue cells. These data demonstrate that vinculin contributes to the mechanical stability under large external forces by regulating contractile stress generation. Furthermore, the regulatory function resides in the tail domain of vinculin containing the paxillin-binding site.
The Microbial Capsular Polysaccharide Galactoxylomannan Inhibits IL-17A Production in Circulating T Cells from Rheumatoid Arthritis Patients

The persistence of activated T cells in rheumatoid arthritis (RA) synovium may be attributable to increased homing, increased retention or a possible imbalance between cell proliferation and programmed cell death. Induction of apoptosis may represent a potential therapeutic approach. Galactoxylomannan (GalXM) from the opportunistic fungus Cryptococcus neoformans can interact with T cells and induce T-cell apoptosis through the inhibition of CD45 phosphatase activity. The aim of this study was to determine the effect of GalXM on circulating T cells from patients with RA and the underlying mechanisms. GalXM immunomodulating effect on apoptosis and signal transduction pathway involved in IL-17A production was evaluated on T cells. RA T-cell apoptosis, higher than that of control T cells, was further increased by GalXM through induction of caspase-3 activation. Activated T cells expressing the CD45RO molecule and producing IL-17A were the main target of GalXM-induced apoptosis. GalXM induced consistent impairment of IL-17A production and inhibition of STAT3, which was hyperactivated in RA. In conclusion, GalXM triggered apoptosis of activated memory T cells and interfered with IL-17A production in RA. These data suggest therapeutic targeting of deleterious Th17 cells in RA and other autoimmune diseases.
Intensive Interstitial Strengthening of Stainless Steels

The high chromium content of stainless steel impairs the interstitial solubility of carbon in austenite at solution annealing or hardening temperature. Replacing carbon by nitrogen improves the interstitial solubility which is raised most, if carbon and nitrogen are added jointly. Respective thermodynamic equilibrium calculations have led to a new group of austenitic and martensitic steels as well as to a thermochemical surface treatment, that make use of the C + N concept to intensively strengthen stainless steels with about 0.5 to 1 mass% of these interstitials. Pressurized electro slag remelting (PESR) is required to raise the N content in the melt and to avoid degassing during solidification of martensitic stainless steels with C + N known as CRONIDUR®. For austenitic CrMn steels the C + N concept affords to dissolve about 1 mass% of these elements in the melt at atmospheric pressure and keep them in solid solution during solidification of the new CARNIT® steels. Case hardening of stainless martensitic steels with nitrogen instead of carbon, called SolNit®, combines the effect of C in the steel and N dissolved in a surface zone via heat treatment in N2 gas of controlled pressure. The key properties and respective microstructures of these three versions of the C + N concept are discussed along with some applications.
To Wnt or Lose: The Missing Non-Coding Linc in Colorectal Cancer

Colorectal cancer (CRC) is the third most frequent cancer and one of the leading causes for cancer-related mortality. Aberrant activation of the Wnt signaling is an essential initiating factor in colon carcinogenesis, and a driving force of CRC progression. Recently, long non-coding RNAs (lncRNAs) have emerged as significant players in CRC pathogenesis through diversified mechanisms. Although both Wnt signaling and lncRNAs represent interesting research areas for CRC, an effort of directly connecting these two areas is lacking. To fill in the knowledge gap, we focus on the reported findings of lncRNAs that regulate Wnt signaling or essential Wnt signaling targets. These include several newly discovered lncRNAs originated from the amplified cancer-associated chromosome 8q24 region that surrounds the essential Wnt target MYC gene, lncRNAs reported to be involved in CRC stem cells, and several individual lncRNAs connected to Wnt signaling through other mechanisms. This review will provide essential information that assists in understanding the missing link of lncRNAs to the classical Wnt signaling in CRC.
Childhood social environment and Hodgkin's lymphoma: new findings from a population-based case-control study.

BACKGROUND Risk of Hodgkin's lymphoma in young adults has previously been associated with higher childhood socioeconomic status (SES) and other markers of delayed infection with common childhood pathogens, especially the Epstein-Barr virus. This study examines the current role of childhood social environment in the development of Hodgkin's lymphoma. METHODS A population-based case-control study of 565 Hodgkin's lymphoma cases and 679 controls was conducted in the Boston, MA metropolitan area and the state of Connecticut to investigate the viral etiology of Hodgkin's lymphoma. RESULTS A novel association was detected between attendance of nursery school or day care and reduced risk of Hodgkin's lymphoma among individuals ages 15 to 54 years. The odds ratio (95% confidence interval) for having attended preschool for at least 1 year was 0.64 (0.45-0.92). Risk of young-adult Hodgkin's lymphoma was also associated with family history of hematopoietic cancer, Jewish ethnicity, and cigarette smoking. Other indicators of childhood SES were not associated with young-adult Hodgkin's lymphoma. Among older adults ages 55 to 79 years, Hodgkin's lymphoma was associated with lower childhood SES but not with preschool attendance. CONCLUSIONS Early exposure to other children at nursery school and day care seems to decrease the risk of Hodgkin's lymphoma in young adults, most likely by facilitating childhood exposure to common infections and promoting maturation of cellular immunity. This finding supports the delayed infection model of Hodgkin's lymphoma etiology in young adults while introducing a new major determinant of age at infection. Hodgkin's lymphoma seems to have a separate pathogenesis among older adults.
Identification and analysis of discrete functional domains in the pro region of pre-pro-transforming growth factor beta 1

A series of site-specific insertion and deletion mutants was prepared in the pro domain of transforming growth factor beta 1 (TGF beta 1) encoded by simian TGF beta 1 cDNA. These mutants were transiently expressed in COS-1 cells and the ability of each to be properly processed, folded correctly, and secreted was determined by immunoblot analysis of cells and culture supernatants. Insertions in regions corresponding to amino acid residues 50, 154, and 170 blocked secretion; culture supernatants from COS-1 cells showed no immunologically reactive proteins, whereas intact cells contained high levels of the mutant polypeptides. Insertions in the middle portion of the pro domain at residues 81, 85, and 144 affected disulfide maturation of the mature TGF beta 1. An insertion at residue 110, on the other hand, appeared to destabilize the mature TGF beta 1 polypeptide, resulting in degraded growth factor. Relatively small (10 amino acids) to large (125 amino acids) deletion mutations in the pro domain of TGF beta 1, when expressed as the full-length pre-pro-TGF beta 1, appeared to block secretion. By contrast, if the pro domain (designated beta 1-latency-associated peptide [beta 1-LAP]) was expressed independently, deletion mutants in the region 40-110 were readily secreted by the COS-1 cells, whereas deletions in residues 110- 210 either destabilized the structure of the protein or blocked its intracellular transport. Cross-linking assays employing radioiodinated TGF beta 1 and biological assays indicate that residues 50-85 of beta 1- LAP are required for association with mature TGF beta 1.
Social Studies

This article features an elementary teacher who has worked with the authors for the past 10 years in research on building a classroom community and using cultural universals as the centerpiece for elementary social studies for all children. Cultural universals are basic human needs and social experiences found in all societies, past and present, and include food, shelter, clothing, transportation, communication, family living, money, childhood, government, and so on. Actions related to cultural universals are experienced by all children regardless of their cultures, socioeconomic backgrounds, achievement levels, or special needs, so teachers can connect to these experiences as bases for developing historical, geographic, political, economic, sociological, psychological, or anthropological understandings. The ultimate goal is connected knowledge about how the social system works, how and why it developed over time, how and why it varies across locations and cultures, and what all this might mean for personal, social, and civic decision making.
Magnetic monopole and string excitations in two-dimensional spin ice

We study the magnetic excitations of a square lattice spin ice recently produced in an artificial form as an array of nanoscale magnets. Our analysis, based on the dipolar interaction between the nanomagnetic islands, correctly reproduces the ground state observed experimentally. In addition, we find magnetic monopolelike excitations effectively interacting by means of the usual Coulombic plus a linear confining potential, the latter being related to a stringlike excitation binding the monopoles pairs, which indicates that the fractionalization of magnetic dipoles may not be so easy in two dimensions. These findings contrast this material with the three-dimensional analog, where such monopoles experience only the Coulombic interaction. We discuss, however, two entropic effects that affect the monopole interactions. First, the string configurational entropy may lose the string tension and then free magnetic monopoles should also be found in lower dimensional spin ices; second, in contrast to the string con.