Miracle-dz/UniFAR-FTUs huggingface dataset:
Cervical Cancer in Ethiopia: The Effect of Adherence to Radiotherapy on Survival.

BACKGROUND Discontinuation of radiotherapy (RT) for cervical cancer (CC) in sub-Saharan Africa is common because of patient- and health service-related reasons. This analysis describes toxicities and the effect of adherence on survival. MATERIALS AND METHODS A total of 788 patients with CC (2008-2012) who received RT at Addis Ababa University Hospital were included. External beam RT without brachytherapy was performed according to local guidelines. We previously described survival and prognostic factors. Now we analyzed adherence and survival according to total doses received. Adjustment via multivariate cox regression analysis was done. RESULTS One-year overall survival (OS) after radical RT (n = 180) for International Federation of Gynecology and Obstetrics (FIGO) stages IIA-IIIA was 89% for discontinuation (<72 Gy) and 96% for adherence (≥72 Gy; hazard ratio [HR], 1.3; 95% confidence interval [CI], 0.5-3.3). One-year OS after nonradical RT (n = 389) for FIGO stages IIIB-IVA was 71% for discontinuation (<40 Gy) and 87% for adherence (44-50 Gy; HR, 3.1; 95% CI, 1.4-6.9). One-year OS for FIGO stages IIIB-IVB (n = 219) after one compared with two or more palliative single fractions of 10 Gy were 14% and 73% respectively (HR, 7.3; 95% CI, 3.3-16). Reasons for discontinuation were toxicities, economic background, and RT machine breakdown. Grade 1-2 late toxicities were common (e.g., 30% proctitis, 22% incontinence). Grade 3 early and late toxicities were seen in 5% and 10% respectively; no grade 4 toxicities occurred. CONCLUSION Patients who adhered to guideline-conforming RT had optimum survival. Better supportive care, brachytherapy to reduce toxicities, socioeconomic support, and additional radiation capacities could contribute to better adherence and survival. IMPLICATIONS FOR PRACTICE This study presents the effect of adherence on survival of 788 patients with cervical cancer receiving external beam radiotherapy without brachytherapy in Ethiopia. Discontinuation of planned radiotherapy according to local guidelines considerably reduced survival for all International Federation of Gynecology and Obstetrics (FIGO) stages treated (hazard ratios were 1.3, 3.1, and 7.3 for FIGO stages IIA-IIIA and IIIB-IVA and the palliative approach, respectively). Early toxicity (5% grade 3) should be treated to improve adherence. Economic difficulties and machine breakdown should also be addressed to reduce discontinuation and improve survival.
Results from first Danish full scale test section with poroelastic road surface

The first Danish test section with poroelastic road surface (PERS) was constructed on August 27th 2013 at the Kalvehave test site in Denmark, as a part of the EU project PERSUADE. The test section is 75 m long and has the width of one driving lane. The yearly daily traffic is 4000 with 10 % heavy vehicles. The speed limit is 80 km/h and the estimated real speed is somewhat lower. The pavement is optimized for low emission of tyre-road noise by using a high built in air void, small aggregates and elastic material. The pavement has a porous structure and is composed of stone and rubber aggregates with a maximum aggregate size of 5 mm and the binder used is polyurethane. The pavement type has been developed and tested in the laboratory. An intensive monitoring program was started at the Kalvehave test site even before the test section was opened for normal traffic. The monitoring program includes measuring noise, acoustical absorption, elasticity, permeability, friction, rolling resistance and visual inspections. Measurements of noise using the SPB road side and the CPX trailer methods have been repeated continuously over the first 9 months of the lifetime of the PERS pavement.
Elastic Properties of Adhesive Polymers. III. Adhesive Polymer Films Under Dry and Wet Conditions Characterized by Means of Nanoindentation

The mechanical properties of cured wood-adhesive films were tested in dry and wet states by means of nanoindentation. A fluid cell was used to monitor possible property changes as a function of changing moisture content. Under wet conditions, the elastic modulus and hardness of all tested adhesives (i.e., urea formaldehyde, melamine urea formaldehyde, phenol resorcinol formaldehyde, and one-component polyurethane) were reduced to about half of their values in the dry state. After renewed drying, all adhesives largely recovered their initial mechanical properties. © 2010 Wiley Periodicals, Inc. J Appl Polym Sci, 2010
Heteropolar eunotioid diatoms (Bacillariophyceae) were common in the North American Arctic during the middle Eocene

Eunotioid diatoms that express asymmetry in both the apical and transapical axes, forming heteropolar valves, are generally placed in the genus Actinella. The degree of heteropolarity varies between species, ranging from subtle differences between poles to highly differentiated head poles bearing an apical protuberance. Actinella species with less difference between the poles and lacking an apical protuberance are gradational with Eunotia. With over 100 known species reported globally, primarily in the tropics, only Actinella punctata Lewis, 1864 is currently known from North America. As part of a biotic survey and inventory project focused on the middle Eocene Giraffe crater locality near the Arctic Circle in northern Canada, we have uncovered a wealth of eunotioid diatoms including at least five heteropolar species attributed to Actinella, three of which are described formally herein as A. hickeyi sp. nov., A. goodwinii sp. nov. and A. kimberlitica sp. nov. These diatoms all lack apical protuberances and bear resemblance to modern heteropolar counterparts within Eunotia. The objectives of this contribution are to report the findings from the Giraffe locality relative to modern and fossil eunotiophycid taxa, discuss the use of heteropolarity as a distinguishing character for the genus Actinella, and consider the palaeoclimatic and biogeographical implications of these observations.
Temperature Dependence of Optical Constants for Chinese Liquid Hydrocarbon Fuels in the Near-Infrared (NIR) Region from Room Temperature to 400 K

An improved double-thickness method combined with genetic algorithm was developed to determine the optical constants of liquid hydrocarbon fuels. Different from traditional transmission measurement, it obtained the total transmittance of a window–liquid–window three-layer structure, which is the ratio of the transmission intensity of the filled cell and that of the empty sample compartment. Also, the change of the surface reflectance at the interface of the liquid sample and the optical window and the difference between forward reflection and back reflection are considered. Experiments were operated to measure spectra in the wavelength range of 0.83–2.2 µm using a Fourier transform infrared (FT-IR) spectrometer. To verify the reliability of this method, optical constants of the distilled water were determined from its experimental transmittance spectra and the results agreed well with published data. On the basis of verification, the transmittance spectra of Chinese No. -35 diesel fuel were measured at 300 K, 350 K, and 400 K with liquid sample thicknesses of 0.5 mm and 1.0 mm. Then the optical constants of the diesel sample were obtained and the temperature dependence was analyzed. Analytical results indicate that the biggest change of the extinction coefficient between 300 K and 400 K can reach 30%, while that of the refractive index is 4.7%.
Associations of Neighborhood Crime and Safety and With Changes in Body Mass Index and Waist Circumference: The Multi-Ethnic Study of Atherosclerosis

Using data from the Multi-Ethnic Study of Atherosclerosis (MESA), we evaluated associations of neighborhood crime and safety with changes in adiposity (body mass index (BMI) and waist circumference). MESA is a longitudinal study of cardiovascular disease among adults aged 45-84 years at baseline in 2000-2002, from 6 US sites, with follow-up for MESA participants until 2012. Data for this study were limited to Chicago, Illinois, participants in the MESA Neighborhood Ancillary Study, for whom police-recorded crime data were available, and who had complete baseline data (n = 673). We estimated associations of individual-level safety, aggregated neighborhood-level safety, and police-recorded crime with baseline levels and trajectories of BMI and waist circumference over time using linear mixed modeling with random effects. We also estimated how changes in these factors related to changes in BMI and waist circumference using econometric fixed-effects models. At baseline, greater individual-level safety was associated with more adiposity. Increasing individual- and neighborhood-level safety over time were associated with decreasing BMI over the 10-year period, with a more pronounced effect observed in women for individual-level safety and men for neighborhood-level safety. Police-recorded crime was not associated with adiposity. Neighborhood-level safety likely influences adiposity change and subsequent cardiovascular risk in multiethnic populations.
Mixed-species RNAseq analysis of human lymphoma cells adhering to mouse stromal cells identifies a core gene set that is also differentially expressed in the lymph node microenvironment of mantle cell lymphoma and chronic lymphocytic leukemia patients

A subset of hematologic cancer patients is refractory to treatment or suffers relapse, due in part to minimal residual disease, whereby some cancer cells survive treatment. Cell-adhesion-mediated drug resistance is an important mechanism, whereby cancer cells receive survival signals via interaction with e.g. stromal cells. No genome-wide studies of in vitro systems have yet been performed to compare gene expression in different cell subsets within a co-culture and cells grown separately. Using RNA sequencing and species-specific read mapping, we compared transcript levels in human Jeko-1 mantle cell lymphoma cells stably adhered to mouse MS-5 stromal cells or in suspension within a co-culture or cultured separately as well as in stromal cells in co-culture or in separate culture. From 1050 differentially expressed transcripts in adherent mantle cell lymphoma cells, we identified 24 functional categories that together represent four main functional themes, anti-apoptosis, B-cell signaling, cell adhesion/migration and early mitosis. A comparison with previous mantle cell lymphoma and chronic lymphocytic leukemia studies, of gene expression differences between lymph node and blood, identified 116 genes that are differentially expressed in all three studies. From these genes, we suggest a core set of genes (CCL3, CCL4, DUSP4, ETV5, ICAM1, IL15RA, IL21R, IL4I1, MFSD2A, NFKB1, NFKBIE, SEMA7A, TMEM2) characteristic of cells undergoing cell-adhesion-mediated microenvironment signaling in mantle cell lymphoma/chronic lymphocytic leukemia. The model system developed and characterized here together with the core gene set will be useful for future studies of pathways that mediate increased cancer cell survival and drug resistance mechanisms.
Ensemble Classification of Alzheimer's Disease and Mild Cognitive Impairment Based on Complex Graph Measures from Diffusion Tensor Images

The human brain is a complex network of interacting regions. The gray matter regions of brain are interconnected by white matter tracts, together forming one integrative complex network. In this article, we report our investigation about the potential of applying brain connectivity patterns as an aid in diagnosing Alzheimer's disease and Mild Cognitive Impairment (MCI). We performed pattern analysis of graph theoretical measures derived from Diffusion Tensor Imaging (DTI) data representing structural brain networks of 45 subjects, consisting of 15 patients of Alzheimer's disease (AD), 15 patients of MCI, and 15 healthy subjects (CT). We considered pair-wise class combinations of subjects, defining three separate classification tasks, i.e., AD-CT, AD-MCI, and CT-MCI, and used an ensemble classification module to perform the classification tasks. Our ensemble framework with feature selection shows a promising performance with classification accuracy of 83.3% for AD vs. MCI, 80% for AD vs. CT, and 70% for MCI vs. CT. Moreover, our findings suggest that AD can be related to graph measures abnormalities at Brodmann areas in the sensorimotor cortex and piriform cortex. In this way, node redundancy coefficient and load centrality in the primary motor cortex were recognized as good indicators of AD in contrast to MCI. In general, load centrality, betweenness centrality, and closeness centrality were found to be the most relevant network measures, as they were the top identified features at different nodes. The present study can be regarded as a “proof of concept” about a procedure for the classification of MRI markers between AD dementia, MCI, and normal old individuals, due to the small and not well-defined groups of AD and MCI patients. Future studies with larger samples of subjects and more sophisticated patient exclusion criteria are necessary toward the development of a more precise technique for clinical diagnosis.
Living Near the Edge: How Extreme Outcomes and Their Neighbors Drive Risky Choice

Extreme stimuli are often more salient in perception and memory than moderate stimuli. In risky choice, when people learn the odds and outcomes from experience, the extreme outcomes (best and worst) also stand out. This additional salience leads to more risk-seeking for relative gains than for relative losses—the opposite of what people do when queried in terms of explicit probabilities. Previous research has suggested that this pattern arises because the most extreme experienced outcomes are more prominent in memory. An important open question, however, is what makes these extreme outcomes more prominent? Here we assess whether extreme outcomes stand out because they fall at the edges of the experienced outcome distributions or because they are distinct from other outcomes. Across four experiments, proximity to the edge determined what was treated as extreme: Outcomes at or near the edge of the outcome distribution were both better remembered and more heavily weighted in choice. This prominence did not depend on two metrics of distinctiveness: lower frequency or distance from other outcomes. This finding adds to evidence from other domains that the values at the edges of a distribution have a special role.
Genomics studies on musical aptitude, music perception, and practice

When searching for genetic markers inherited together with musical aptitude, genes affecting inner ear development and brain function were identified. The alpha‐synuclein gene (SNCA), located in the most significant linkage region of musical aptitude, was overexpressed when listening and performing music. The GATA‐binding protein 2 gene (GATA2) was located in the best associated region of musical aptitude and regulates SNCA in dopaminergic neurons, thus linking DNA‐ and RNA‐based studies of music‐related traits together. In addition to SNCA, several other genes were linked to dopamine metabolism. Mutations in SNCA predispose to Lewy‐body dementia and cause Parkinson disease in humans and affect song production in songbirds. Several other birdsong genes were found in transcriptome analysis, suggesting a common evolutionary background of sound perception and production in humans and songbirds. Regions of positive selection with musical aptitude contained genes affecting auditory perception, cognitive performance, memory, human language development, and song perception and production of songbirds. The data support the role of dopaminergic pathway and their link to the reward mechanism as a molecular determinant in positive selection of music. Integration of gene‐level data from the literature across multiple species prioritized activity‐dependent immediate early genes as candidate genes in musical aptitude and listening to and performing music.
Application of functionalized coir fibre as eco-friendly oil sorbent

Abstract Synthetic polymers are based on the use of crude oil as their raw material. Oil spillage takes place during production, storage, transportation and usage at the water bodies and land surfaces. This may be due to tanker disasters, wars, operation failures, equipment breaking down, accidents and natural disasters. The spilled oil into land, river or ocean imposes a major threat to the environment and endangers the aquatic life. To overcome this problem, oil sorbents are commonly used for cleaning the oil spills. In this paper, coir fibre which was obtained as a waste from coconut fruit was functionalized to increase its hydrophobicity and oil sorption capacity. The product so formed was characterized by FT-IR, TGA and SEM which confirmed grafting of butyl acrylate monomer onto the coir fibres. The effects of time, temperature and monomer concentration on the grafting of coir fibre and oil absorption capacity have also been investigated. Results demonstrated that the modified coir fibre absorbed fair amount of crude oil and studies also indicate that a simple squeezing was sufficient to remove most of the oil sorbed by the fibres so that the sorbents can be reused several times for oil spill clean-up.
School Personnel’s Bystander Action in Situations of Dating Violence, Sexual Violence, and Sexual Harassment Among High School Teens: A Qualitative Analysis

We examined school personnel’s engagement in bystander action in situations of teen dating violence (DV), sexual violence (SV), and sexual harassment (SH). We conducted focus groups with 22 school personnel from three high schools in New Hampshire. School personnel identified their own barriers to intervening in situations of teen DV, SV, and SH (e.g., not having the time or ability to intervene). School personnel also discussed the ways in which they intervened before (e.g., talking with teens about healthy relationships), during (e.g., breaking up fights between dating partners) and after (e.g., comforting victims) instances of teen DV, SV, and SH. These data can be used to support the development of bystander training for school personnel as one component of comprehensive DV, SV, and SH prevention for teens. In addition, these data provide information that can be used to develop measures that assess school personnel bystander action barriers and behaviors in instances of teen DV, SV, and SH.
Visual Attention-Based Target Detection and Discrimination for High-Resolution SAR Images in Complex Scenes

The conventional methods for target detection and discrimination in high-resolution synthetic aperture radar (SAR) images usually have low accuracy and slow speed, especially for large complex scenes. To overcome these drawbacks, in this paper, we propose a target detection and discrimination method based on visual attention model. In the detection stage, to pop out the targets and suppress the background clutter in the saliency map, we select the task-dependent scales from the Gaussian pyramid of the original SAR image. Moreover, we adopt the clustering algorithm to remerge several isolated focus of attention areas, which are obtained from the saliency map, into a complete target region. The candidate target SAR image chips are extracted with relative high accuracy and low time cost in this stage. Since there may be single target, multiple targets, or partial targets with complex clutter in each SAR image chip, it is hard to acquire accurate target-shaped blob via segmentation. Some classical discrimination features which are extracted based on target segmentation may lose effectiveness. In the discrimination stage of our method, to solve the above problem, based on the saliency and gist (SG) features for optical satellite images, we propose the modified SG (MSG) features for SAR target discrimination. The MSG features are complementary to each other and can provide a more complete description of the extracted SAR image chips without segmentation, which also reduces the computation burden. The experimental results on the synthetic images and miniSAR real SAR image data set demonstrate that the proposed target detection and discrimination method can detect and discriminate the targets from the complex background clutter with high accuracy and fast speed in high-resolution SAR images.
Functional Contributions of Strong and Weak Cellular Oscillators to Synchrony and Light-shifted Phase Dynamics

Light is the primary signal that calibrates circadian neural circuits and thus coordinates daily physiological and behavioral rhythms with solar entrainment cues. Drosophila and mammalian circadian circuits consist of diverse populations of cellular oscillators that exhibit a wide range of dynamic light responses, periods, phases, and degrees of synchrony. How heterogeneous circadian circuits can generate robust physiological rhythms while remaining flexible enough to respond to synchronizing stimuli has long remained enigmatic. Cryptochrome is a short-wavelength photoreceptor that is endogenously expressed in approximately half of Drosophila circadian neurons. In a previous study, physiological light response was measured using real-time bioluminescence recordings in Drosophila whole-brain explants, which remain intrinsically light-sensitive. Here we apply analysis of real-time bioluminescence experimental data to show detailed dynamic ensemble representations of whole circadian circuit light entrainment at single neuron resolution. Organotypic whole-brain explants were either maintained in constant darkness (DD) for 6 days or exposed to a phase-advancing light pulse on the second day. We find that stronger circadian oscillators support robust overall circuit rhythmicity in DD, whereas weaker oscillators can be pushed toward transient desynchrony and damped amplitude to facilitate a new state of phase-shifted network synchrony. Additionally, we use mathematical modeling to examine how a network composed of distinct oscillator types can give rise to complex dynamic signatures in DD conditions and in response to simulated light pulses. Simulations suggest that complementary coupling mechanisms and a combination of strong and weak oscillators may enable a robust yet flexible circadian network that promotes both synchrony and entrainment. A more complete understanding of how the properties of oscillators and their signaling mechanisms facilitate their distinct roles in light entrainment may allow us to direct and augment the circadian system to speed recovery from jet lag, shift work, and seasonal affective disorder.
The role of force chains in granular materials: from statics to dynamics

This paper investigates the role of force chains in granular materials under both quasi-static biaxial loading and dynamic impact loading conditions. This study is mainly interested in investigating the role of force chains on the global mechanical responses of samples as well as on the microstructure of granular materials. For this purpose, discrete element methods are adopted to perform different loading tests. Granular materials are modelled as aggregations of poly-disperse spherical particles. Results first show that force chains are responsible for the strength of the sample: in 2D biaxial test, the establishment and buckling of force chains are responsible for the evolution in terms of deviatoric stress; in 3D dynamic impact test, the development and the buckling of force chains are responsible for the evolution of impact force on the impacting projectile. Second, force chains are found to play an important role in the microstructure of granular materials: in statics, the buckling of force chains mainly locates inside the shear band, and is related to the increase in local void around the buckling grain as well as the increase in kinetic energy inside the sample; in dynamic test, the number of buckled force chains is correlated with the energy dissipation inside the sample.