Miracle-dz/UniFAR-FTUs huggingface dataset:
Biomarkers of folate status in NHANES: a roundtable summary123456

A roundtable to discuss the measurement of folate status biomarkers in NHANES took place in July 2010. NHANES has measured serum folate since 1974 and red blood cell (RBC) folate since 1978 with the use of several different measurement procedures. Data on serum 5-methyltetrahydrofolate (5MTHF) and folic acid (FA) concentrations in persons aged ≥60 y are available in NHANES 1999–2002. The roundtable reviewed data that showed that folate concentrations from the Bio-Rad Quantaphase II procedure (Bio-Rad Laboratories, Hercules, CA; used in NHANES 1991–1994 and NHANES 1999–2006) were, on average, 29% lower for serum and 45% lower for RBC than were those from the microbiological assay (MA), which was used in NHANES 2007–2010. Roundtable experts agreed that these differences required a data adjustment for time-trend analyses. The roundtable reviewed the possible use of an isotope-dilution liquid chromatography–tandem mass spectrometry (LC-MS/MS) measurement procedure for future NHANES and agreed that the close agreement between the MA and LC-MS/MS results for serum folate supported conversion to the LC-MS/MS procedure. However, for RBC folate, the MA gave 25% higher concentrations than did the LC-MS/MS procedure. The roundtable agreed that the use of the LC-MS/MS procedure to measure RBC folate is premature at this time. The roundtable reviewed the reference materials available or under development at the National Institute of Standards and Technology and recognized the challenges related to, and the scientific need for, these materials. They noted the need for a commutability study for the available reference materials for serum 5MTHF and FA.
Vitamin D status and its association with insulin resistance among type 2 diabetics: A case -control study in Ghana

Background Vitamin D plays a major role in physiological processes that modulate mineral metabolism and immune function with probable link to several chronic and infectious conditions. Emerging data suggests a possible influence of vitamin D on glucose homeostasis. This study sought to provide preliminary information on vitamin D status among Ghanaian type 2 diabetics and assessed its association with glucose homeostasis. Methods In a case control study, 118 clinically diagnosed Type 2 Diabetes Mellitus (T2DM) patients attending Diabetic Clinic at the Nkawie Government Hospital were enrolled between October and December 2015. Hundred healthy non-diabetics living in Nkawie district were selected as controls. Structured questionnaires were administered to obtain socio-demographic data. Venous blood samples were taken from both cases and controls to estimate their FBG, Lipid profile spectrophotometrically and IPTH, 25OHD by ELISA. Statistical analyses were performed using SPSS v20.0 Statistics. Results The average age of the study participants was 58.81years for cases and 57.79year for controls. There was vitamin D deficiency of 92.4% among T2DM cases and 60.2% among the non diabetic controls. Vitamin D deficiency did not significantly associate with HOMA-β [T2DM: r2 = 0.0209, p = 0.1338 and Control: r2 = 0.0213, p = 0.2703] and HOMA-IR [T2DM: r2 = 0.0233, p = 0.1132 and Control: r2 = 0.0214, p = 0.2690] in both the controls and the cases. Conclusion Vitamin D deficiency is prevalent in both T2DM and non-diabetics. There is no association between vitamin D deficiency and insulin resistance or beta cell function in our study population. Vitamin D supplementation among type 2 diabetics is recommended.
Novel Acyclic Nucleoside Phosphonate Analogues with Potent Anti-Hepatitis B Virus Activities

ABSTRACT Novel acyclic nucleoside phosphonates with a pyrimidine base preferentially containing an amino group at C-2 and C-4 and a 2-(phosphonomethoxy)ethoxy or (R)-2-(phosphonomethoxy)propoxy group at C-6 selectively inhibit the replication of wild-type and lamivudine-resistant hepatitis B viruses. The activity of the most potent compounds was comparable to that of adefovir.
Malaria Journal Pattern of Drug Utilization for Treatment of Uncomplicated Malaria in Urban Ghana following National Treatment Policy Change to Artemisinin-combination Therapy

Background: Change of first-line treatment of uncomplicated malaria to artemisinin-combination therapy (ACT) is widespread in Africa. To expand knowledge of safety profiles of ACT, pharmacovigilance activities are included in the implementation process of therapy changes. Ghana implemented first-line therapy of artesunate-amodiaquine in 2005. Drug utilization data is an important component of determining drug safety, and this paper describes how anti-malarials were prescribed within a prospective pharmacovigilance study in Ghana following anti-malarial treatment policy change.
Associations between social and general health factors and symptoms related to temporomandibular disorders and bruxism in a population of 50‐year‐old subjects

The aim of this epidemiological study was to examine associations between temporomandibular (TMD)‐related problems and variables from three domains: (1) socio‐economic attributes, (2) general health and health‐related lifestyle, and (3) dental attitudes and behaviors. The overall response rate to a questionnaire mailed to the total population of 50‐year‐old subjects in two Swedish counties (8,888 individuals) was 71%. Among the 53 questions in the questionnaire, those related to social, general health, and health‐related factors were used as independent variables in logistic regression models. Three TMD‐related symptoms and reported bruxism were used as dependent variables. Impaired general health was the strongest risk factor for reported TMD symptoms. Along with female gender and dissatisfaction with dental care, impaired general health was significantly associated with all three TMD symptoms. A few more factors were associated with pain from the TMJ only. In comparison, reported bruxism showed more significant associations with the independent variables. In addition to the variables associated with TMD symptoms, being single, college/university education, and daily tobacco use were also significantly correlated with bruxism. Besides female gender, impaired general health, dissatisfaction with dental care, and a few social and health‐related factors demonstrated significant associations with TMD symptoms and reported bruxism.
Time Courses of Carbachol‐Induced Responses in Guinea Pig Atria Under the Influence of Ouabain, Calcium, and Rate of Stimulation

Summary The response of isolated left atria of guinea pigs to carbachol was measured in the presence and during washout of the drug. The time courses of the negative inotropic effect and of the rate of shortening in action potential duration were compared. The initial rapid decline in force of contraction was followed by a slowly developing partial recovery (fading). After removal of the drug, a transient phase of hypercontractility was observed before the control level was reached again. In contrast to the mechanical effect, the drug-induced shortening of the action potential duration proceeded monophasically. The fading and hypercontractility phenomena shown by the mechanical response to the drug were influenced by the stimulation rate and by the presence of ouabain. From the dissociation of electrical and mechanical effects it is concluded that fading and hypercontractility are not due to changes of receptor sensitivity but reflect a change in cellular calcium distribution.
Influence of Maternal Filariasis on Childhood Infection and Immunity to Wuchereria bancrofti in Kenya

ABSTRACT To determine whether maternal filariasis influences the risk of infection by and immunity to Wuchereria bancrofti in children, we performed a cross-sectional study in an area of Kenya where filariasis is endemic. Residents of 211 households were enrolled; 376 parents and 938 of their offspring between the ages of 2 and 17 years were examined for filarial infection status as determined by blood-borne microfilariae and filarial antigenemia. Children of infected mothers had a three- to fourfold increased risk of filarial infection, as ascertained by circulating filarial antigen, relative to children of uninfected mothers (P < 0.001). Paternal infection did not correlate with childhood infection status, indicating a specific maternal effect. Peripheral blood mononuclear cells from children of filaria-infected mothers (n = 33) had higher levels of constitutive interleukin-5 (IL-5) and IL-10, increased microfilarial antigen-specific IL-5 production, and diminished microfilarial antigen-driven lymphocyte proliferation than cells from children of uninfected mothers (n = 46; P < 0.05). In contrast, there were no differences between the two groups in adult worm antigen-driven gamma interferon, IL-2, IL-4, IL-5, and IL-10 production and lymphocyte proliferation. These data indicate that maternal filarial infection increases childhood susceptibility to W. bancrofti and skews filaria-specific immunity toward a Th2-type cytokine response. The results support the notion that in utero exposure to filarial antigens affects the natural history of filariasis during childhood.
Coinfection of human foreskin fragments with multiple human papillomavirus types (HPV-11, -40, and -LVX82/MM7) produces regionally separate HPV infections within the same athymic mouse xenograft

The athymic mouse xenograft system was used to prepare infectious stocks of two additional anogenital tissue-targeting human papillomaviruses (HPVs) in a manner similar to that for the development of infectious stocks of HPV-11. An anal condyloma from a transplant patient was used as material for extraction of infectious virus, and human foreskin fragments were incubated with the virus suspension and transplanted subrenally into athymic mice. Partial viral sequencing indicated that two rare HPV types (HPV-40 and HPVLVX82/MM7) were concurrently present in both the patient condyloma and the foreskin xenografts, and passage of both types was achieved as a mixed infection with HPV-40 predominating. Xenografts that developed from simultaneous infection of human foreskin fragments with HPV-11, -40, and -LVX82/MM7 virions produced regionally separate areas of HPV-11 and -40 infection as determined by in situ hybridization. In addition, in situ hybridization with HPV-40 and HPVLVX82/MM7 DNA probes demonstrated that both of these HPV types were present as adjacent but separate infections within the same anal condyloma of the transplant patient. These studies indicate that multiple HPV types can simultaneously infect genital tissue and that each HPV type predominantly maintains regional separation within the same papilloma.
Ontogeny and localization of the lens crystallins in Xenopus laevis lens regeneration.

Ontogeny and localization of the lens crystallins, especially the γ-crystallins were investigated in Xenopus laevis lens regenerating system by the ‘indirect’ immunofluorescence staining method. Antibodies directed against Rana pipiens γ-crystallin antigen were used for the detection of this crystallin; the validity of such an experiment has been shown in a previous report. To detect total lens proteins we used X. laevis anti-total lens protein antibody. The regenerates were staged according to Freeman (1963) and the first positive reaction with both the two antisera was observed in an early stage-4 regenerate . The site of theimmunofluorescence reaction was nearly identical in both, suggesting that γ-crystallinsare one of the first, if not the first of the lens crystallins to appear during lens regeneration. The secondary fibres, when developed, showed less immunofluorescence than the primary fibres with R. pipiens anti-γ crystallin antibody, though the reaction was intense in the secondary fibres with X. laevis anti-total lens protein antibody. The intensity and distribution of immunofluorescence increased with the growth of the lens. With the R. pipiens anti-γ crystallin antibody, the lens epithelium did not show any immunofluorescence reaction at any stage of lens regeneration. With X. laevis anti-total lens protein antibody, the epithelium showed an immunofluorescence reaction earlier than in the normal lens development. With the two antisera we used, we did not observe any immunofluorescence outside the lens tissue.
Rheumatoid arthritis joint progression in sustained remission is determined by disease activity levels preceding the period of radiographic assessment.

OBJECTIVE Joint damage is related to disease activity in rheumatoid arthritis (RA), but the degree of its progression and the temporal associations between disease activity and joint damage are unclear. The aim of this study was to evaluate whether there is a latency in the effect of disease activity on radiographic progression in patients with RA. METHODS Data were obtained from the PREMIER trial, a 2-year randomized, controlled clinical trial of adalimumab plus methotrexate versus methotrexate alone or adalimumab alone in early RA. Radiographic progression of joint damage was calculated using the modified total Sharp score in a subset of patients whose disease was in remission (Simplified Disease Activity Index<or=3.3) in the second year of the trial. The progression of damage in the second year was compared between groups of patients whose disease was already in remission for an additional period of 3, 6, or 9 months during the first year. Analysis of variance was used to test for a linear trend. RESULTS Among 794 patients with early RA, 119 (15%) achieved sustained remission during the second year, with no difference in radiographic progression across the 3 treatment groups. Radiographic progression in the second year was significantly different between patients with 3, 6, or 9 additional months of remission during year 1 (mean change in the modified Sharp score 1.19 in those with 3 additional months of remission versus 0.20 in those with 6 additional months of remission and -0.32 in those with 9 additional months of remission; P<0.05). The results were supported by similar findings in a series of sensitivity analyses. CONCLUSION These data indicate that the level of disease activity as well as the duration of remission affect subsequent progression of radiographic damage in RA. This latency between disease activity and its effects on radiographic progression should be considered when evaluating radiographic outcomes in trials of RA.
Africa ’ s Growth Tragedy Revisited : Weak States , Strong Rulers *

This paper investigates how democracy and dictatorship affect economic growth in SubSaharan Africa, and whether the effect from democracy on growth depends on level of state capacity. The paper particularly focuses on the adverse economic effects of dictatorial regimes in countries with weak state institutions. In such contexts, leaders are free to pursue policies that are macroeconomically inefficient, but which enhance leaders’ survival in office and increase their personal wealth. The empirical analysis shows that democracy most likely contributes to higher growth rates in Sub-Saharan Africa, and that democracy has a larger positive effect on growth in Africa than globally. Moreover, statistical analyses, both on African and global samples, show that democracy has a particularly positive effect in countries with weak state institutions. The interaction between weak state capacity and dictatorship is a vital factor underlying Africa’s many economic development disasters.
In Vitro Replication of Hepatitis E Virus (HEV) Genomes and of an HEV Replicon Expressing Green Fluorescent Protein

ABSTRACT Hepatitis E virus (HEV) RNA replication occurred in seven of nine primate cell cultures transfected with in vitro transcripts of an infectious cDNA clone. Cell-to-cell spread did not occur in cell cultures, but rhesus monkeys inoculated with lysates of HEV-transfected PLC/PRF/5 and Huh-7 cells became infected with HEV. A replicon with the ORF2 and ORF3 genes deleted and replaced with the green fluorescent protein gene also replicated in the same primate cells that supported the replication of the full-length genome. Fluorescence-activated cell sorter analysis confirmed that the 7mG cap structure was critical for efficient infectivity, although replication could be initiated at a very low level in its absence. HEV virions were also able to infect a limited number of cells of certain lines.
Probabilistic modelling of morphologically rich languages

This thesis investigates how the sub-structure of words can be accounted for in probabilistic models of language. Such models play an important role in natural language processing tasks such as translation or speech recognition, but often rely on the simplistic assumption that words are opaque symbols. This assumption does not fit morphologically complex language well, where words can have rich internal structure and sub-word elements are shared across distinct word forms. Our approach is to encode basic notions of morphology into the assumptions of three different types of language models, with the intention that leveraging shared sub-word structure can improve model performance and help overcome data sparsity that arises from morphological processes. In the context of n-gram language modelling, we formulate a new Bayesian model that relies on the decomposition of compound words to attain better smoothing, and we develop a new distributed language model that learns vector representations of morphemes and leverages them to link together morphologically related words. In both cases, we show that accounting for word sub-structure improves the models' intrinsic performance and provides benefits when applied to other tasks, including machine translation. We then shift the focus beyond the modelling of word sequences and consider models that automatically learn what the sub-word elements of a given language are, given an unannotated list of words. We formulate a novel model that can learn discontiguous morphemes in addition to the more conventional contiguous morphemes that most previous models are limited to. This approach is demonstrated on Semitic languages, and we find that modelling discontiguous sub-word structures leads to improvements in the task of segmenting words into their contiguous morphemes.
Route repetition and route retracing: effects of cognitive aging

Retracing a recently traveled route is a frequent navigation task when learning novel routes or exploring unfamiliar environments. In the present study we utilized virtual environments technology to investigate age-related differences in repeating and retracing a learned route. In the training phase of the experiment participants were guided along a route consisting of multiple intersections each featuring one unique landmark. In the subsequent test phase, they were guided along short sections of the route and asked to indicate overall travel direction (repetition or retracing), the direction required to continue along the route, and the next landmark they would encounter. Results demonstrate age-related deficits in all three tasks. More specifically, in contrast to younger participants, the older participants had greater problems during route retracing than during route repetition. While route repetition can be solved with egocentric response or route strategies, successfully retracing a route requires allocentric processing. The age-related deficits in route retracing are discussed in the context of impaired allocentric processing and shift from allocentric to egocentric navigation strategies as a consequence of age-related hippocampal degeneration.
Packet pre-filtering for network intrusion detection

As intrusion detection systems (IDS) utilize more complex syntax to efficiently describe complex attacks, their processing requirements increase rapidly. Hardware and, even more, software platforms face difficulties in keeping up with the computationally intensive IDS tasks, and face overheads that can substantially diminish performance. In this paper we introduce a packet pre-filtering approach as a means to resolve, or at least alleviate, the increasing needs of current and future intrusion detection systems. We observe that it is very rare for a single incoming packet to fully or partially match more than a few tens of IDS rules. We capitalize on this observation selecting a small portion from each IDS rule to be matched in the pre-filtering step. The result of this partial match is a small subset of rules that are candidates for a full match. Given this pruned set of rules that can apply to a packet, a second-stage, full-match engine can sustain higher throughput. We use DefCon traces and recent Snort IDS rule-set, and show that matching the header and up to an 8-character prefix for each payload rule on each incoming packet can determine that on average 1.8 rules may apply on each packet, while the maximum number of rules to be checked across all packets is 32. Effectively, packet pre-filtering prevents matching at least 99% of the SNORT rules per packet and as a result minimizes processing and improves the scalability of the system. We also propose and evaluate the cost and performance of a reconfigurable architecture that uses multiple processing engines in order to exploit the benefits of pre-filtering.
A Hybrid Sensing Approach for Pure and Adulterated Honey Classification

This paper presents a comparison between data from single modality and fusion methods to classify Tualang honey as pure or adulterated using Linear Discriminant Analysis (LDA) and Principal Component Analysis (PCA) statistical classification approaches. Ten different brands of certified pure Tualang honey were obtained throughout peninsular Malaysia and Sumatera, Indonesia. Various concentrations of two types of sugar solution (beet and cane sugar) were used in this investigation to create honey samples of 20%, 40%, 60% and 80% adulteration concentrations. Honey data extracted from an electronic nose (e-nose) and Fourier Transform Infrared Spectroscopy (FTIR) were gathered, analyzed and compared based on fusion methods. Visual observation of classification plots revealed that the PCA approach able to distinct pure and adulterated honey samples better than the LDA technique. Overall, the validated classification results based on FTIR data (88.0%) gave higher classification accuracy than e-nose data (76.5%) using the LDA technique. Honey classification based on normalized low-level and intermediate-level FTIR and e-nose fusion data scored classification accuracies of 92.2% and 88.7%, respectively using the Stepwise LDA method. The results suggested that pure and adulterated honey samples were better classified using FTIR and e-nose fusion data than single modality data.
Cold homes, fuel poverty and energy efficiency improvements: A longitudinal focus group approach

Cold homes and fuel poverty have been identified as factors in health and social inequalities that could be alleviated through energy efficiency interventions. Research on fuel poverty and the health impacts of affordable warmth initiatives have to date primarily been conducted using quantitative and statistical methods, limiting the way how fuel poverty is understood. This study took a longitudinal focus group approach that allowed exploration of lived experiences of fuel poverty before and after an energy efficiency intervention. Focus group discussions were held with residents from three low-income communities before (n = 28) and after (n = 22) they received energy efficiency measures funded through a government-led scheme. The results show that improving the energy efficiency of homes at risk of fuel poverty has a profound impact on wellbeing and quality of life, financial stress, thermal comfort, social interactions and indoor space use. However, the process of receiving the intervention was experienced by some as stressful. There is a need for better community engagement and communication to improve the benefits delivered by fuel poverty programmes, as well as further qualitative exploration to better understand the wider impacts of fuel poverty and policy-led intervention schemes.