Miracle-dz/UniFAR-FTUs huggingface dataset:
Visfatin induces human endothelial VEGF and MMP-2/9 production via MAPK and PI3K/Akt signalling pathways: novel insights into visfatin-induced angiogenesis.

AIMS Visfatin is a novel adipokine whose plasma concentrations are altered in obesity and obesity-related disorders; these states are associated with an increased incidence of cardiovascular disease. We therefore investigated the effect of visfatin on vascular endothelial growth factor (VEGF) and matrix metalloproteinases (MMP-2, MMP-9) production and the potential signalling cascades. METHODS AND RESULTS In human umbilical vein endothelial cells (HUVECs), visfatin significantly and dose-dependently up-regulated gene expression and protein production of VEGF and MMPs and down-regulated expression of tissue inhibitors of MMPs (TIMP-1 and TIMP-2). The gelatinolytic activity of MMPs (analysed by zymography) correlated with mRNA and western blot findings. Interestingly, visfatin significantly up-regulated VEGF receptor 2 expression. Inhibition of VEGFR2 and VEGF [by soluble FMS-like tyrosine kinase-1 (sFlt1)] down-regulated visfatin-induced MMP induction. Visfatin induced dose- and time-dependent proliferation and capillary-like tube formation. Importantly, visfatin was noted to have anti-apoptotic effects. In HUVECs, visfatin dose-dependently activated PI3K/Akt (phosphatidylinositol 3-kinase/Akt) and ERK(1/2) (extracellular signal-regulated kinase) pathways. The functional effects and MMP/VEGF induction were shown to be dependent on the MAPK/PI3K-Akt/VEGF signalling pathways. Inhibition of PI3K/Akt and ERK(1/2) pathways led to significant decrease of visfatin-induced MMP and VEGF production and activation, along with significant reduction in endothelial proliferation and capillary tube formation. CONCLUSION Our data provide the first evidence of visfatin-induced endothelial VEGF and MMP production and activity. Further, we show for the first time the involvement of the MAPK and PI3K/Akt signalling pathways in mediating these actions, as well as endothelial cell proliferation. Collectively, our findings provide novel insights into visfatin-induced endothelial angiogenesis.
GTPase activity–coupled treadmilling of the bacterial tubulin FtsZ organizes septal cell wall synthesis

Coordinating cell wall synthesis and cell division Most bacteria are protected by peptidoglycan cell walls, which must be remodeled to split the cell. Cell division requires the tubulin homolog FtsZ, a highly conserved cytoskeletal polymer that specifies the future site of division. Bisson-Filho et al. and Yang et al. found that the dynamic treadmilling of FtsZ filaments controls both the location and activity of the associated cell wall synthetic enzymes. This creates discrete sites of cell wall synthesis that circle around the division plane to divide the cell. Science, this issue p. 739, p. 744 The bacterial tubulin FtsZ uses guanosine triphosphate hydrolysis to power treadmilling, organizing processive synthesis of the septal cell wall. The bacterial tubulin FtsZ is the central component of the cell division machinery, coordinating an ensemble of proteins involved in septal cell wall synthesis to ensure successful constriction. How cells achieve this coordination is unknown. We found that in Escherichia coli cells, FtsZ exhibits dynamic treadmilling predominantly determined by its guanosine triphosphatase activity. The treadmilling dynamics direct the processive movement of the septal cell wall synthesis machinery but do not limit the rate of septal synthesis. In FtsZ mutants with severely reduced treadmilling, the spatial distribution of septal synthesis and the molecular composition and ultrastructure of the septal cell wall were substantially altered. Thus, FtsZ treadmilling provides a mechanism for achieving uniform septal cell wall synthesis to enable correct polar morphology.
Intensity-time dependence dosing criterion in the EMF exposure guidelines in Russia

ABSTRACT Major approaches of the Russian Federation in setting of exposure guidelines to electromagnetic fields (EMF) in occupational and public environments are discussed in this paper. EMF exposure guidelines in Russia are based on the results of hygienic, clinical, physiological, epidemiological and experimental studies and are frequency-dependent. The concept of a threshold principle of occupational and environmental factors due to hazardous exposure effects has been used to set permissible exposure levels of different EMF frequency ranges. The data of experimental studies showed hazardous threshold levels of EMF effects. The main criteria of EMF hazardous exposure evaluated in the experimental study concerned both estimation of threshold levels of chronic (long-term) and acute exposure. Also, this paper contains some recent experimental study data on correlation of long-term radiofrequency and power-frequency EMF exposure effects with regard to time duration, the so-called time-dependence approach. It enables identification of the value of permissible EMF exposure levels depending on exposure duration. This approach is used in occupational exposure guideline setting and requires the introduction of “power exposition” (PE) and “maximal permissible level” (MPL). In general, EMF exposure guidelines are established with regard to possible duration of exposure per day.
Stability theory for adaptive systems: Methods of averaging and persistency of excitation

A method of averaging is developed for the stability analysis of linear differential equations with small time-varying coefficients which do not necessarily possess a (global) average. The technique is then applied to determine the stability of a linear equation which arises in the study of adaptive systems where the adaptive parameters are slowly varying. The stability conditions are stated in the frequency-domain which shows the relation between persistent excitation and unmodeled dynamics.
Novel technique for the wireless reading of passive microfluidic sensors

This letter focuses on the remote reading of high-resolution microfluidic and passive (i.e., batteryless and chipless) temperature sensors. These sensors are remotely interrogated from a 24GHz Frequency-Modulated Continuous-Wave radar performing a mechanical beam scanning for locating the sensors and measuring the variation of sensors electromagnetic echo level due to temperature fluctuation. From radar measurement data an estimator is proposed here for determining the meniscus position of the fluid inside the sensors microchannel and for deriving the temperature at the sensors location. It is shown that the estimator presents a convenient linear dependence with the meniscus position at the sensor location. The smallest measurable variation of the meniscus position is of 40µm.
Tracking on-orbit stability of the response versus scan angle for the S-NPP VIIRS reflective solar bands

Built on strong heritage of the MODIS (Moderate Resolution Imaging Spectroradiometer) sensor, the Visible Infrared Imaging Radiometer Suite (VIIRS) carried on Suomi NPP (National Polar-orbiting Partnership) satellite (http://npp.gsfc.nasa.gov/viirs.html) has been in operation for nearly five fives. The on-board calibration of the VIIRS reflective solar bands (RSB) relies on a solar diffuser (SD) located at a fixed scan angle and a solar diffuser stability monitor (SDSM). The VIIRS response versus scan angle (RVS) was characterized prelaunch in lab ambient conditions and is currently used to determine the on orbit response for all scan angles relative to the SD scan angle. Since the RVS is vitally important to the quality of calibrated level 1B products, it is important to monitor its on-orbit stability. In this study, the RVS stability is examined based on reflectance trends collected from 16-day repeatable orbits over preselected pseudo-invariant desert sites in Northern Africa. These trends cover nearly entire Earth view scan range so that any systematic drifts in the scan angle direction would indicate a change in RVS. This study also compares VIIRS RVS on-orbit stability results with those from Aqua and Terra MODIS over the first four years of mission for a few selected bands, which provides further information on potential VIIRS RVS on-orbit changes.
The Natural History of the South Hills Crossbill in Relation to Its Impending Extinction*

Increasingly, the species that we discover will be uncommon, area restricted, and vulnerable to extinction. I describe the natural history of a newly discovered seed-eating finch from the Rocky Mountain region, the South Hills crossbill (Loxia curvirostra complex). It relies on seeds in the closed cones of the fire-adapted Rocky Mountain lodgepole pine (Pinus contorta latifolia) and is found only in the higher elevations of two small mountain ranges in southern Idaho. Here crossbills and pine are engaged in a coevolutionary arms race. Although most of the seeds remain secured within the cones for decades until the heat of a stand-replacing fire causes the cone scales to separate, seeds become accessible to crossbills slowly as cones weather and gaps form between some of the scales. However, hot days (≥32°C), especially four or more hot days, seem to mimic the effect of fire, apparently causing the immediate release of a fraction of the seeds. Such events caused a 20% annual decline in crossbills that lasted up to 4 years and an 80% decline in the population between 2003 and 2011. This is an example of a novel trophic mismatch between a consumer and its resource caused by a shift in the phenology of the resource arising from climate change. Not only do these phenological shifts have the potential to cause seed consumers to decline, these shifts are also likely to cause reduced recruitment of the plants. The South Hills crossbill is especially vulnerable and will likely go extinct this century before lodgepole pine is extirpated from the South Hills.
Polycation-π Interactions Are a Driving Force for Molecular Recognition by an Intrinsically Disordered Oncoprotein Family

Molecular recognition by intrinsically disordered proteins (IDPs) commonly involves specific localized contacts and target-induced disorder to order transitions. However, some IDPs remain disordered in the bound state, a phenomenon coined “fuzziness”, often characterized by IDP polyvalency, sequence-insensitivity and a dynamic ensemble of disordered bound-state conformations. Besides the above general features, specific biophysical models for fuzzy interactions are mostly lacking. The transcriptional activation domain of the Ewing's Sarcoma oncoprotein family (EAD) is an IDP that exhibits many features of fuzziness, with multiple EAD aromatic side chains driving molecular recognition. Considering the prevalent role of cation-π interactions at various protein-protein interfaces, we hypothesized that EAD-target binding involves polycation- π contacts between a disordered EAD and basic residues on the target. Herein we evaluated the polycation-π hypothesis via functional and theoretical interrogation of EAD variants. The experimental effects of a range of EAD sequence variations, including aromatic number, aromatic density and charge perturbations, all support the cation-π model. Moreover, the activity trends observed are well captured by a coarse-grained EAD chain model and a corresponding analytical model based on interaction between EAD aromatics and surface cations of a generic globular target. EAD-target binding, in the context of pathological Ewing's Sarcoma oncoproteins, is thus seen to be driven by a balance between EAD conformational entropy and favorable EAD-target cation-π contacts. Such a highly versatile mode of molecular recognition offers a general conceptual framework for promiscuous target recognition by polyvalent IDPs.
Copy‐Number Variants Detection by Low‐Pass Whole‐Genome Sequencing

Emerging studies have demonstrated that whole‐genome sequencing (WGS) is an efficient tool for copy‐number variants (CNV) detection, particularly in probe‐poor regions, as compared to chromosomal microarray analysis (CMA). However, the cost of testing is beyond economical for routine usage and the lengthy turn‐around time is not ideal for clinical implementation. In addition, the demand for computational resources also reduces the probability of clinical integration into each laboratory. Herein, a protocol providing CNV detection from low‐pass, whole‐genome sequencing (0.25×) in a clinical laboratory setting is described. The cost is reduced to less than $200 USD per sample and the turn‐around time is within an acceptable clinically workable time‐frame (7 days). © 2017 by John Wiley & Sons, Inc.
Does a previous prostate biopsy-related acute bacterial prostatitis affect the results of radical prostatectomy?

ABSTRACT Objective To The standard technique for obtaining a histologic diagnosis of prostatic carcinomas is transrectal ultrasound guided prostate biopsy. Acute prostatitis which might develop after prostate biopsy can cause periprostatic inflammation and fibrosis. In this study, we performed a retrospective review of our database to determine whether ABP history might affect the outcome of RP. Materials and Methods 441 RP patients who were operated in our clinic from 2002 to 2014 were included in our study group. All patients’ demographic values, PSA levels, biopsy and radical prostatectomy specimen pathology results and their perioperative/ postoperative complications were evaluated. Results There were 41 patients in patients with acute prostatitis following biopsy and 397 patients that did not develop acute prostatitis. Mean blood loss, transfusion rate and operation period were found to be significantly higher in ABP patients. Hospitalization period and reoperation rates were similar in both groups. However, post-op complications were significantly higher in ABP group. Conclusion Even though it does not affect oncological outcomes, we would like to warn the surgeons for potential complaints during surgery in ABP patients.
A structural model of latent evolutionary potentials underlying neutral networks in proteins

A central question in molecular evolution concerns the nature of phenotypic transitions, in particular, if neutral mutations hamper or somehow facilitate adaptability of proteins to new requirements. Proteins have been found to fluctuate between different structures, with frequencies of structures being proportional to their stability. Therefore, functional promiscuity may correspond to different structures with energies close to the ground state which then represent multiple selectable traits. We here postulate that these near‐ground‐state structures facilitate smooth transitions between phenotypes. Using a biophysical heteropolymer model with exhaustive mappings of sequences onto structures, we demonstrate that this is indeed possible because of a smooth gradient of stability along which any structural phenotype can be optimized and also because of mutational proximity of similar phenotypes in genotype space. Our model provides a biophysical rationalization of the intriguing, and otherwise puzzling experimental observation that adaptation to new requirements, e.g., latent function of a promiscuous enzyme, can proceed while the “old,” phenotypically dominant function is maintained along a series of seemingly neutral mutations (see accompanying article). Thus pleiotropy may facilitate adaptation of latent traits before gene duplications and increase the effective adaptability of proteins.
The value of 18F-FDG-PET/CT in the diagnosis of solitary pulmonary nodules

Background: Solitary pulmonary nodules (SPNs) are common imaging findings. Many studies have indicated that 18F-fluorodeoxyglucose positron emission tomography/computed tomography (18F-FDG-PET/CT) is an accurate test for distinguishing benign and malignant SPNs. The aim of this study was to investigate the value of 18F-FDG-PET/CT in the diagnosis of malignant SPNs. Methods: We systematically searched the PubMed and Embase databases up to March 2017, and published data on sensitivity, specificity, and other measures of diagnostic accuracy of 18F-FDG-PET/CT in the diagnosis of malignant SPNs were meta-analyzed. Statistical analyses were undertaken using Meta-DiSc 1.4 software and Stata version 12.0. The measures of accuracy of 18F-FDG-PET/CT in the diagnosis of malignant SPNs were pooled using random-effects models. Results: A total of 20 publications reporting 21 studies were identified. Pooled results indicated that 18F-FDG-PET/CT showed a diagnostic sensitivity of 0.89 (95% confidence interval [CI], 0.87–0.91) and a specificity of 0.70 (95% CI, 0.66–0.73). The positive likelihood ratio was 3.33 (95% CI, 2.35–4.71) and the negative likelihood ratio was 0.18 (95% CI, 0.13–0.25). The diagnostic odds ratio was 22.43 (95% CI, 12.55–40.07). Conclusions: 18F-FDG-PET/CT showed insufficient sensitivity and specificity for diagnosing malignant SPNs; it cannot replace the “gold standard” pathology by resection or percutaneous biopsy. Larger studies are required for further evaluation.
Centralized and Distributed Command Governor Approaches for Water Supply Systems Management

This paper evaluates the applicability of command governor (CG) strategies to the optimal management of drinking water supply systems (DWSSs) in both centralized and distributed ways. It will be shown that CG approaches provide an adequate framework for addressing the management of these large-scale interconnected systems in the presence of periodically time-varying disturbances (water demands) that can be anticipated by using time-series forecasting approaches. The proposed centralized and distributed CG schemes are presented, discussed, and compared when applied to the management of DWSS considering the same set of operational goals in all cases. This paper illustrates the effectiveness of all strategies using the Barcelona DWSS as a case study and highlighting the advantages of each approach.
Determination of Processing Parameters for Thermoplastic Biocomposites Based on Hybrid Yarns Using Finite Elements Simulation

This paper investigates the processing parameters for the compression molding of hemp/PLA hybrid yarn biocomposites and their effect on the final mechanical properties. Finite element simulations are used to develop and assess the processing parameters, pressure, temperature, and time. These parameters are then evaluated experimentally by producing the composites by two different methods, to compare the results of experimentally determined processing conditions to parameters determined by the simulation analysis. The assessment of mechanical properties is done with several experimental tests, showing small improvements for the composites produced with the simulation method. The application of the simulation analysis results in considerably reduced processing times, from the initial 10 min to only three minutes, thereby vastly improving the processing method. While the employed methods are not yet able to produce composites with greatly improved mechanical properties, this study can be seen as a constructive approach, which has the ability to lead to further improvements.
Basic Fibroblast Growth Factor Regulates REX1 Expression Via IL‐6 In Stem Cells Isolated From Human Exfoliated Deciduous Teeth

Basic fibroblast growth factor (bFGF) regulates pluripotent marker expression and cellular differentiation in various cell types. However, the mechanism by which bFGF regulates REX1 expression in stem cells, isolated from human exfoliated deciduous teeth (SHEDs) remains unclear. The aim of the present study was to investigate the regulation of REX1 expression by bFGF in SHEDs. SHEDs were isolated and characterized. Their mRNA and protein expression levels were determined using real‐time polymerase chain reaction and enzyme‐linked immunosorbent assay, respectively. In some experiments, chemical inhibitors were added to the culture medium to impede specific signaling pathways. Cells isolated from human exfoliated deciduous tooth dental pulp tissue expressed mesenchymal stem cell surface markers (CD44, CD73, CD90, and CD105). These cells differentiated into osteogenic and adipogenic lineages, when appropriately induced. Treating SHEDs with bFGF induced REX1 mRNA expression and this effect was attenuated by pretreatment with FGFR or Akt inhibitors. Cycloheximide pretreatment also inhibited the bFGF‐induced REX1 expression, implying the involvement of intermediate molecule(s). Further, the addition of an IL‐6 neutralizing antibody attenuated the bFGF‐induced REX1 expression by SHEDs. In conclusion, bFGF enhanced REX1 expression by SHEDs via the FGFR and Akt signaling pathways. Moreover, IL‐6 participated in the bFGF‐induced REX1 expression in SHEDs. J. Cell. Biochem. 118: 1480–1488, 2017. © 2016 Wiley Periodicals, Inc.
Chiral Majorana fermion modes in a quantum anomalous Hall insulator–superconductor structure

A propagating Majorana mode Although Majorana fermions remain elusive as elementary particles, their solid-state analogs have been observed in hybrid semiconductor-superconductor nanowires. In a nanowire setting, the Majorana states are localized at the ends of the wire. He et al. built a two-dimensional heterostructure in which a one-dimensional Majorana mode is predicted to run along the sample edge (see the Perspective by Pribiag). The heterostructure consisted of a quantum anomalous Hall insulator (QAHI) bar contacted by a superconductor. The authors used an external magnetic field as a “knob” to tune into a regime where a Majorana mode was propagating along the edge of the QAHI bar covered by the superconductor. A signature of this propagation—half-quantized conductance—was then observed in transport experiments. Science, this issue p. 294; see also p. 252 Transport experiments showing half-integer quantized conductance indicate a propagating Majorana edge mode. Majorana fermion is a hypothetical particle that is its own antiparticle. We report transport measurements that suggest the existence of one-dimensional chiral Majorana fermion modes in the hybrid system of a quantum anomalous Hall insulator thin film coupled with a superconductor. As the external magnetic field is swept, half-integer quantized conductance plateaus are observed at the locations of magnetization reversals, giving a distinct signature of the Majorana fermion modes. This transport signature is reproducible over many magnetic field sweeps and appears at different temperatures. This finding may open up an avenue to control Majorana fermions for implementing robust topological quantum computing.
Micro Commentary Snapping magnetosome chains by asymmetric cell division in magnetotactic

The mechanism by which prokaryotic cells organize and segregate their intracellular organelles during cell division has recently been the subject of substantial interest. Unlike other microorganisms, magnetotactic bacteria (MTB) form internal magnets (known as magnetosome chain) for magnetic orientation, and thus face an additional challenge of dividing and equipartitioning this magnetic receptor to their daughter cells. Although MTB have been investigated more than four decades, it is only recently that the basic mechanism of how MTB divide and segregate their magnetic organelles has been addressed. In this issue of Molecular Microbiology, the cell cycle of the model magnetotactic bacterium, Magnetospirillum gryphiswaldense is characterized by Katzmann and co-workers. The authors have found that M. gryphiswaldense undergoes an asymmetric cell division along two planes. A novel wedge-like type of cellular constriction is observed before separation of daughter cells and magnetosome chains, which is assumed to help cell cope with the magnetic force within the magnetosome chain. The data shows that the magnetosome chain becomes actively recruited to the cellular division site, in agreement with the previous suggestions described by Staniland et al. (2010), and the actin-like protein MamK is likely involved in this fast polar-to-midcell translocalization. With the use of cryo-electron tomography, an arc-shaped Z ring is observed near the division site, which is assumed to trigger the asymmetric septation of cell and magnetosome chain.