Miracle-dz/UniFAR-FTUs huggingface dataset:
Beyond the Glands: An in-Depth Perspective of Neurological Manifestations in Sjögren’s Syndrome

Primary Sjögren’s Syndrome (pSjS) is an autoimmune disease characterized by sicca (xerophthalmia or xerostomia) symptoms, anti-SS-A (Ro) or anti-SS-B (La) autoantibodies, and lymphocytic infiltrates in the exocrine glands. Disease incidence is estimated to be 0.1–3% of the general population with 0.4–3.1 million individuals in the US with women being nine times more likely to be afflicted with SjS than men. The frequency continues to rise accompanied with the multi-factorial etiology making it a challenging disease to manage and treat. Treatment of this disease remains problematic due to the lack of therapeutic treatments relying on replacement therapies such as artificial saliva and eye lubricants or immunosuppressive agents. To further complicate the management of the disease, there are number of multi-systemic manifestations specifically peripheral neuropathy associated with later stage of disease onset. Increasingly, there is mounting evidence that suggests the involvement of central nervous system. It remains to be determined the underlying cause and effect of the dysregulated immune response and the neuropathy associated with SjS. In this review, we provided an in-depth look at key neurological dysfunctions documented to occur in pSjS. Specifically, we discussed the prevalence, symptomology, and current treatments.
Review: Dietary fiber utilization and its effects on physiological functions and gut health of swine

Although dietary fiber (DF) negatively affects energy and nutrient digestibility, there is growing interest for the inclusion of its fermentable fraction in pig diets due to their functional properties and potential health benefits beyond supplying energy to the animals. This paper reviews some of the relevant information available on the role of different types of DF on digestion of nutrients in different sections of the gut, the fermentation process and its influence on gut environment, especially production and utilization of metabolites, microbial community and gut health of swine. Focus has been given on DF from feed ingredients (grains and coproducts) commonly used in pig diets. Some information on the role DF in purified form in comparison with DF in whole matrix of feed ingredients is also presented. First, composition and fractions of DF in different feed ingredients are briefly reviewed. Then, roles of different fractions of DF on digestion characteristics and physiological functions in the gastrointestinal tract (GIT) are presented. Specific roles of different fractions of DF on fermentation characteristics and their effects on production and utilization of metabolites in the GIT have been discussed. In addition, roles of DF fermentation on metabolic activity and microbial community in the intestine and their effects on intestinal health are reviewed and discussed. Evidence presented in this review indicates that there is wide variation in the composition and content of DF among feed ingredients, thereby their physico-chemical properties in the GIT of swine. These variations, in turn, affect the digestion and fermentation characteristics in the GIT of swine. Digestibility of DF from different feed ingredients is more variable and lower than that of other nutrients like starch, sugars, fat and CP. Soluble fractions of DF are fermented faster, produce higher amounts of volatile fatty acid than insoluble fractions, and favors growth of beneficial microbiota. Thus, selective inclusion of DF in diets can be used as a nutritional strategy to optimize the intestinal health of pigs, despite its lower digestibility and consequential negative effect on digestibility of other nutrients.
Effects of nutrient enrichment on growth and phlorotannin production in Fucus gardneri embryos

Resource-allocation models predict trade-offs between growth and chemical defense. The carbon/nutrient balance hypothesis (CNBH) predicts that plants will allocate carbon to growth when nutrients are abundant and allocate it to carbon-based antiherbivore defenses when nutrients are limiting. In marine systems, field and laboratory tests of the CNBH with phlorotannin-producing algae have generally supported the predictions of the model. However, these tests have all measured phlorotannin concentrations in adult algae rather than juveniles, which are susceptible to higher grazing pressures. We experimentally tested some of the predictions of the CNBH in early post-set- tlement stages of a common intertidal macroalga, Fucus gardneri, by growing F. gardneri embryos in media enriched with 3 nutrients: nitrogen, phosphorus, and iron. Phlorotannin concentrations across all treatments were correlated with embryo size but not with growth rates. As predicted by the model, nitrogen enrichment significantly enhanced embryo growth rates and decreased phlorotannin con- centrations. Iron enrichment alone had no effect on phlorotannin concentrations, but did affect growth. The effects on growth were primarily in altering morphology rather than changing the over- all size of the embryos. Phosphorus enrichment had no effect on growth, but did significantly lower phlorotannin concentrations. Surprisingly, there was a significant iron-phosphorus interaction effect on both growth and phlorotannin concentrations. Enrichment with a combination of iron and phos- phorus had a stronger negative effect on growth and phlorotannin concentrations than would have been predicted based on the individual effects of these 2 nutrients. The combination of iron and phos- phorus enrichment may have physiologically stressed the embryos, resulting in decreased phlorotan- nin production. Our results suggest that ontogeny plays a strong role in determining secondary metabolite levels and that nutrient addition can affect secondary metabolite production in embryos by (1) altering resource allocation patterns, or (2) providing a physiological stress that results in reduced secondary metabolite production.
A genomewide scan identifies two novel loci involved in specific language impairment.

Approximately 4% of English-speaking children are affected by specific language impairment (SLI), a disorder in the development of language skills despite adequate opportunity and normal intelligence. Several studies have indicated the importance of genetic factors in SLI; a positive family history confers an increased risk of development, and concordance in monozygotic twins consistently exceeds that in dizygotic twins. However, like many behavioral traits, SLI is assumed to be genetically complex, with several loci contributing to the overall risk. We have compiled 98 families drawn from epidemiological and clinical populations, all with probands whose standard language scores fall > or =1.5 SD below the mean for their age. Systematic genomewide quantitative-trait-locus analysis of three language-related measures (i.e., the Clinical Evaluation of Language Fundamentals-Revised [CELF-R] receptive and expressive scales and the nonword repetition [NWR] test) yielded two regions, one on chromosome 16 and one on 19, that both had maximum LOD scores of 3.55. Simulations suggest that, of these two multipoint results, the NWR linkage to chromosome 16q is the most significant, with empirical P values reaching 10(-5), under both Haseman-Elston (HE) analysis (LOD score 3.55; P=.00003) and variance-components (VC) analysis (LOD score 2.57; P=.00008). Single-point analyses provided further support for involvement of this locus, with three markers, under the peak of linkage, yielding LOD scores >1.9. The 19q locus was linked to the CELF-R expressive-language score and exceeds the threshold for suggestive linkage under all types of analysis performed-multipoint HE analysis (LOD score 3.55; empirical P=.00004) and VC (LOD score 2.84; empirical P=.00027) and single-point HE analysis (LOD score 2.49) and VC (LOD score 2.22). Furthermore, both the clinical and epidemiological samples showed independent evidence of linkage on both chromosome 16q and chromosome 19q, indicating that these may represent universally important loci in SLI and, thus, general risk factors for language impairment.
CONVOLUTION ALGEBRAS FOR TOPOLOGICAL GROUPOIDS WITH LOCALLY COMPACT FIBRES

The aim of this paper is to introduce various convolution algebras associated with a topological groupoid with locally compact fibres. Instead of working with continuous functions on \(G\), we consider functions having a uniformly continuity property on fibres. We assume that the groupoid is endowed with a system of measures (supported on its fibres) subject to the "left invariance" condition in the groupoid sense.
Hierarchical Clustering Beyond the Worst-Case

Hiererachical clustering, that is computing a recursive partitioning of a dataset to obtain clusters at increasingly finer granularity is a fundamental problem in data analysis. Although hierarchical clustering has mostly been studied through procedures such as linkage algorithms, or top-down heuristics, rather than as optimization problems, recently Dasgupta [1] proposed an objective function for hierarchical clustering and initiated a line of work developing algorithms that explicitly optimize an objective (see also [2, 3, 4]). In this paper, we consider a fairly general random graph model for hierarchical clustering, called the hierarchical stochastic blockmodel (HSBM), and show that in certain regimes the SVD approach of McSherry [5] combined with specific linkage methods results in a clustering that give an O(1)-approximation to Dasgupta’s cost function. We also show that an approach based on SDP relaxations for balanced cuts based on the work of Makarychev et al. [6], combined with the recursive sparsest cut algorithm of Dasgupta, yields an O(1) approximation in slightly larger regimes and also in the semi-random setting, where an adversary may remove edges from the random graph generated according to an HSBM. Finally, we report empirical evaluation on synthetic and real-world data showing that our proposed SVD-based method does indeed achieve a better cost than other widely-used heurstics and also results in a better classification accuracy when the underlying problem was that of multi-class classification.
In vitro porcine blastocyst development in three‐dimensional alginate hydrogels

Appropriate embryonic and fetal development significantly impact pregnancy success and, therefore, the efficiency of swine production. The pre‐implantation period of porcine pregnancy is characterized by several developmental hallmarks, which are initiated by the dramatic morphological change that occurs as pig blastocysts elongate from spherical to filamentous blastocysts. Deficiencies in blastocyst elongation contribute to approximately 20% of embryonic loss, and have a direct influence on within‐litter birth weight variation. Although factors identified within the uterine environment may play a role in blastocyst elongation, little is known about the exact mechanisms by which porcine (or other species’) blastocysts initiate and progress through the elongation process. This is partly due to the difficulty of replicating elongation in vitro, which would allow for its study in a controlled environment and in real‐time. We developed a three dimensional (3‐D) culture system using alginate hydrogel matrices that can encapsulate pig blastocysts, maintain viability and blastocyst architecture, and facilitate reproducible morphological changes with corresponding expression of steroidogenic enzyme transcripts and estrogen production, consistent with the initiation of elongation in vivo. This review highlights key aspects of the pre‐implantation period of porcine pregnancy and the difficulty of studying blastocyst elongation in vivo or by using in vitro systems. This review also provides insights on the utility of 3‐D hydrogels to study blastocyst elongation continuously and in real‐time as a complementary and confirmatory approach to in vivo analysis.
Neuroscience method to establish the spatiotemporal evolution of task-related ortical activity from electrocorticographic signals in single trials

Background: Progress in neuroscience depends substantially on the ability to establish the detailed spatial and temporal sequence of neuronal population-level activity across large areas of the brain. Because there is substantial inter-trial variability in neuronal activity, traditional techniques that rely on signal averaging obscure where and when neuronal activity occurs. Thus, up to the present, it has been difficult to examine the detailed progression of neuronal activity across large areas of the brain. New method: Here we describe a method for establishing the spatiotemporal evolution of neuronal population-level activity across large brain regions by determining exactly where and when neural activity occurs during a behavioral task in individual trials. We validate the efficacy of the method, examine the effects of its parameterization, and demonstrate its utility by highlighting two sets of results that could not readily be achieved with traditional methods. ingle trial Results: Our results reveal the precise spatiotemporal evolution of neuronal population activity that unfolds during a sensorimotor task in individual trials, and establishes the relationship between neuronal oscillations and the onset of this activity. Conclusions: The ability to identify the spatiotemporal evolution of neuronal population activity onsets in single trials gives investigators a powerful new tool with which to study large-scale cortical processes. © 2016 Elsevier B.V. All rights reserved.
Systematic Review on Surgical and Nonsurgical Treatment of Type II Odontoid Fractures in the Elderly

Odontoid fractures type II according to Anderson and d'Alonzo are not uncommon in the elderly patients. Still, due to the paucity of evidence the published treatment guidelines are far from equivocal. This systematic review focuses on the published results of type II odontoid fracture treatment in the elderly with regard to survival, nonunion, and complications. After a systematic literature research 38 publications were included. A cumulative analysis of 1284 published cases found greater survival if elderly patients with odontoid fractures type II received surgical treatment (RR = 0.64). With regard to nonunion in 669 published cases primary posterior fusion had the best fusion results. The systematic literature review came to the following conclusions. (1) Surgical stabilisation of odontoid fractures type II improves survival in patients between 65 and 85 years of age compared to nonsurgical treatment. (2) Posterior atlantoaxial fusion for odontoid fractures type II in the elderly has the greatest bony union rate. (3) Odontoid nonunion is not associated with worse clinical or functional results in the elderly. (4) The complication rate of nonsurgical treatment is similar to the complication rate of surgical treatment of odontoid fractures type II in the elderly.
Cornea Conditionally Immortal Slc 4 a 11 / Mouse Corneal Endothelial Cell Line Recapitulates Disrupted Glutaminolysis Seen in Slc 4 a 11 / Mouse Model

Citation: Zhang W, Ogando DG, Kim ET, et al. Conditionally immortal Slc4a11 / mouse corneal endothelial cell line recapitulates disrupted glutaminolysis seen in Slc4a11 / mouse model. Invest Ophthalmol Vis Sci. 2017;58:3723–3731. DOI:10.1167/ iovs.17-21781 PURPOSE. To establish conditionally immortal mouse corneal endothelial cell lines with genetically matched Slc4a11þ/þ and Slc4a11 / mice as a model for investigating pathology and therapies for SLC4A11 associated congenital hereditary endothelial dystrophy (CHED) and Fuchs’ endothelial corneal dystrophy.
Metformin accelerates wound healing in type 2 diabetic db/db mice

Wound healing impairment is increasingly recognized to be a consequence of hyperglycemia-induced dysfunction of endothelial precursor cells (EPCs) in type 2 diabetes mellitus (T2DM). Metformin exhibits potential for the improvement of endothelial function and the wound healing process. However, the underlying mechanisms for the observed beneficial effects of metformin application remain to be completely understood. The present study assessed whether metformin, a widely used therapeutic drug for T2DM, may accelerate wound closure in T2DM db/db mice. Genetically hyperglycemic db/db mice were used as the T2DM model. Metformin (250 mg/kg/day; intragastric) was administered for two weeks prior to EPC collection and wound model creation in db/db mice. Wound healing was evaluated by alterations in the wound area and the number of platelet endothelial cell adhesion molecule-positive cells. The function of the isolated bone marrow-derived EPCs (BM-EPCs) was assessed by a tube formation assay. The number of circulating EPCs, and the levels of intracellular nitric oxide (NO) and superoxide (O2−) were detected by flow cytometry. Thrombospondin-1 (TSP-1) expression was determined by western blot analysis. It was observed that treatment with metformin accelerated wound healing, improved angiogenesis and increased the circulating EPC number in db/db mice. In vitro, treatment with metformin reversed the impaired BM-EPC function reflected by tube formation, and significantly increased NO production while decreasing O2− levels in BM-EPCs from db/db mice. In addition, TSP-1 expression was markedly attenuated by treatment with metformin in cultured BM-EPCs. Metformin contributed to wound healing and improved angiogenesis in T2DM mice, which was, in part, associated with stimulation of NO, and inhibition of O2− and TSP-1 in EPCs from db/db mice.
Factors Affecting Acceptance of Hospital Information Systems Based on Extended Technology Acceptance Model: A Case Study in Three Paraclinical Departments

Abstract Objective Regardless of the acceptance of users, information and communication systems can be considered as a health intervention designed to improve the care delivered to patients. This study aimed to determine the adoption and use of the extended Technology Acceptance Model (TAM2) by the users of hospital information system (HIS) in paraclinical departments including laboratory, radiology, and nutrition and to investigate the key factors of adoption and use of these systems. Materials and Methods A standard questionnaire was used to collect the data from nearly 253 users of these systems in paraclinical departments of eight university hospitals in two different cities of Iran. A total of 202 questionnaires including valid responses were used in this study (105 in Urmia and 97 in Khorramabad). The data were processed using LISREL and SPSS software and statistical analysis technique was based on the structural equation modeling (SEM). Results It was found that the original TAM constructs had a significant impact on the staffs' behavioral intention to adopt HIS in paraclinical departments. The results of this study indicated that cognitive instrumental processes (job relevance, output quality, result demonstrability, and perceived ease of use), except for result demonstrability, were significant predictors of intention to use, whereas the result revealed no significant relationship between social influence processes (subjective norm, voluntariness, and image) and the users' behavioral intention to use the system. Conclusion The results confirmed that several factors in the TAM2 that were important in previous studies were not significant in paraclinical departments and in government-owned hospitals. The users' behavior factors are essential for successful usage of the system and should be considered. It provides valuable information for hospital system providers and policy makers in understanding the adoption challenges as well as practical guidance for the successful implementation of information systems in paraclinical departments.
Physical Activity and Constipation in Hong Kong Adolescents

Objective To examine the association of constipation with exercise, non-exercise physical activity, and sedentary behaviours in Hong Kong adolescents. Methods In 2006–2007, 42 secondary schools were randomly selected to participate in the Hong Kong Student Obesity Surveillance (HKSOS) project. A total of 33692 Form 1–7 students (44.9% boys; mean age 14.8, SD 1.9 years) completed an anonymous questionnaire on lifestyle behaviours. Constipation was defined as a frequency of evacuation of less than once every two days. Exercise (moderate-to-vigorous levels) and non-exercise physical activity (NEPA) were each considered insufficient when less than 1 hour per day, and sedentary behaviours were considered excessive when over 4 hours per day. Logistic regression was used to calculate adjusted odds ratio (AOR) for constipation in relation to exercise, NEPA, and sedentary behaviours, adjusting for potential confounders. Results Constipation was identified in 15.6% (95% CI 15.2% – 16.0%) of adolescents overall, 14.0% in those with sufficient exercise and 19.6% in those without. Constipation was associated with insufficient exercise (AOR 1.26, 95% CI 1.16 – 1.36), insufficient NEPA 1.21 (1.10 – 1.33) and excessive sedentary behaviours (1.25, 1.17 – 1.34). Compared with having none of the above 3 inactive behaviours, increasing AORs of constipation were observed for having 1 (AOR 1.23), 2 (AOR 1.57) and 3 (AOR 1.88) inactive behaviours (p for trend <0.001). Conclusions Constipation was associated with insufficient physical activity and excessive sedentary behaviours among Chinese adolescents with a dose-response relation. If the association is causal, constipation could be prevented by promotion of physical activity.
Rural Villagers and Urban Residents Exposure to Poultry in China

Patterns of poultry exposure in rural and urban areas in China have not been systematically evaluated and compared. The objective of our study is to investigate patterns in human exposure to poultry in rural and urban China. We conducted a two-stage household-based clustered survey on population exposure to live/sick/dead poultry in Xiuning and Shenzhen. Half of the rural households (51%) in Xiuning raised poultry, mostly (78%) free-range. Around half of those households (40%) allowed poultry to stay in their living areas. One quarter of villagers reported having contact with sick or dead poultry. In Shenzhen, 37% urban residents visited live poultry markets. Among these, 40% purchased live poultry and 16% touched the poultry or cages during purchase. Our findings indicated that human exposure to poultry was different in rural and urban areas in China. This discrepancy could contribute to the observed differences in epidemiologic characteristics between urban and rural cases of influenza A(H7N9) and A(H5N1) virus infection.
Frequency Effects in Morpheme Segmentation

The present study explores the effects of frequency in learning to parse novel morphological patterns. In two experiments, suffixes were divided into three classes: high, medium and low frequency, based on the proportion of stems in the input that each suffix attached to (high frequency = 12/12, medium frequency = 6/12, and low frequency = 2/12). In Experiment 1, learners were better at segmenting words containing high frequency suffixes compared to low frequency suffixes, even when the stems were novel. In Experiment 2, token frequency was controlled for across all three suffix frequency classes, but learners were still better at segmenting high frequency suffixes, even when words containing high frequency suffixes were less frequent. These results suggest that learners are sensitive to the frequency distributions of the morphemes in their language, supporting work suggesting that a Zipfian distribution may be ideal for language learning.