Miracle-dz/UniFAR-FTUs huggingface dataset:
KDD CUP-2005 report: facing a great challenge

The KDD-Cup 2005 Competition was held in conjunction with the Eleventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. The task of the KDD-Cup 2005 competition was to classify 800,000 internet user search queries into 67 predefined categories. This task is easy to understand, but the lack of straightforward training set, subjective user intents of queries, poor information in short queries, and high noise level make the task very challenge.In this paper, we summarize the competition task, the evaluation method, and the results of the competition. Here we only highlight some key techniques used in submitted solutions. The technical details of the solutions from the three award winning teams are available in their papers separately in this issue of SIGKDD Explorations. At the end, we also share the results of a survey conducted with this year's Cup participants. To facilitate research in this area, the task description, data, answer set, and related information of this KDD-Cup are published at the KDD-Cup 2005 web site: http://www.acm. org/sigs/sigkdd/kdd2005/kddcup.html.
Optoelectronic Properties of X-Doped (X = O, S, Te) Photovoltaic CSe with Puckered Structure

We exploited novel two-dimensional (2D) carbon selenide (CSe) with a structure analogous to phosphorene, and probed its electronics and optoelectronics. Calculating phonon spectra using the density functional perturbation theory (DFPT) method indicated that 2D CSe possesses dynamic stability, which made it possible to tune and equip CSe with outstanding properties by way of X-doping (X = O, S, Te), i.e., X substituting Se atoms. Then systematic investigation on the structural, electronic, and optical properties of pristine and X-doped monolayer CSe was carried out using the density functional theory (DFT) method. It was found that the bonding feature of C-X is intimately associated with the electronegativity and radius of the doping atoms, which leads to diverse electronic and optical properties for doping different group VI elements. All the systems possess direct gaps, except for O-doping. Substituting O for Se atoms in monolayer CSe brings about a transition from a direct Γ-Γ band gap to an indirect Γ-Y band gap. Moreover, the value of the band gap decreases with increased doping concentration and radius of doping atoms. A red shift in absorption spectra occurs toward the visible range of radiation after doping, and the red-shift phenomenon becomes more obvious with increased radius and concentration of doping atoms. The results can be useful for filtering doping atoms according to their radius or electronegativity in order to tailor optical spectra efficiently.
Effects of macromolecular transport and stochastic fluctuations on dynamics of genetic regulatory systems.

To predict the dynamics of genetic regulation, it may be necessary to consider macromolecular transport and stochastic fluctuations in macromolecule numbers. Transport can be diffusive or active, and in some cases a time delay might suffice to model active transport. We characterize major differences in the dynamics of model genetic systems when diffusive transport of mRNA and protein was compared with transport modeled as a time delay. Delays allow for history-dependent, non-Markovian responses to stimuli (i.e., "molecular memory"). Diffusion suppresses oscillations, whereas delays tend to create oscillations. When simulating essential elements of circadian oscillators, we found the delay between transcription and translation necessary for oscillations. Stochastic fluctuations tend to destabilize and thereby mask steady states with few molecules. This computational approach, combined with experiments, should provide a fruitful conceptual framework for investigating the function and dynamic properties of genetic regulatory systems.
Hydration of fat-free body mass: new physiological modeling approach.

Water is an essential component of living organisms, and in adult mammals the fraction of fat-free body mass (FFM) as water is remarkably stable at ∼0.73. The stability of FFM hydration is a cornerstone of the widely used water isotope dilution method of estimating total body fat. At present, the only suggested means of studying FFM hydration is by experimental total body water (TBW) and FFM measurements. Although deviations from the classical hydration constant are recognized, it is unknown if these are explainable physiological aberrations and/or methodological errors. Moreover, many questions related to hydration stability prevail, including body mass and age effects. These unresolved questions and the importance of the TBW-fat estimation method led us to develop a cellular level FFM hydration model. This physiological model reveals that four water-related ratios combine to produce the observed TBW-to-FFM ratio. The mean and range of FFM hydration observed in adult humans can be understood with the proposed physiological model as can variation in the TBW-to-FFM ratio over the human life span. An extension of the model to the tissue-organ body composition level confirms on a theoretical basis a small but systematic decrease in hydration observed in mammals ranging in body mass by a factor of 105. The present study, the first to advance a physiological hydration model, provides a conceptual framework for the TBW-fat estimation method and identifies important areas that remain to be studied.
Development of a Multisensory Wearable System for Monitoring Cigarette Smoking Behavior in Free-Living Conditions

This paper presents the development and validation of a novel multi-sensory wearable system (Personal Automatic Cigarette Tracker v2 or PACT2.0) for monitoring of cigarette smoking in free-living conditions. The contributions of the PACT2.0 system are: (1) the implementation of a complete sensor suite for monitoring of all major behavioral manifestations of cigarette smoking (lighting events, hand-to-mouth gestures, and smoke inhalations); (2) a miniaturization of the sensor hardware to enable its applicability in naturalistic settings; and (3) an introduction of new sensor modalities that may provide additional insight into smoking behavior e.g., Global Positioning System (GPS), pedometer and Electrocardiogram(ECG) or provide an easy-to-use alternative (e.g., bio-impedance respiration sensor) to traditional sensors. PACT2.0 consists of three custom-built devices: an instrumented lighter, a hand module, and a chest module. The instrumented lighter is capable of recording the time and duration of all lighting events. The hand module integrates Inertial Measurement Unit (IMU) and a Radio Frequency (RF) transmitter to track the hand-to-mouth gestures. The module also operates as a pedometer. The chest module monitors the breathing (smoke inhalation) patterns (inductive and bio-impedance respiratory sensors), cardiac activity (ECG sensor), chest movement (three-axis accelerometer), hand-to-mouth proximity (RF receiver), and captures the geo-position of the subject (GPS receiver). The accuracy of PACT2.0 sensors was evaluated in bench tests and laboratory experiments. Use of PACT2.0 for data collection in the community was validated in a 24 h study on 40 smokers. Of 943 h of recorded data, 98.6% of the data was found usable for computer analysis. The recorded information included 549 lighting events, 522/504 consumed cigarettes (from lighter data/self-registered data, respectively), 20,158/22,207 hand-to-mouth gestures (from hand IMU/proximity sensor, respectively) and 114,217/112,175 breaths (from the respiratory inductive plethysmograph (RIP)/bio-impedance sensor, respectively). The proposed system scored 8.3 ± 0.31 out of 10 on a post-study acceptability survey. The results suggest that PACT2.0 presents a reliable platform for studying of smoking behavior at the community level.
Resetting of exaggerated tubuloglomerular feedback activity in acutely volume-expanded young SHR.

One purpose of the present study was to evaluate the ability of 7-wk-old spontaneously hypertensive rats (SHR) to reset tubuloglomerular feedback (TGF) activity in response to acute volume expansion (VE). Second, we evaluated the contribution of ANG II, via its action on AT1 receptors, to TGF control of glomerular function during VE. TGF was assessed by micropuncture methods and proximal tubular stop-flow pressure (SFP) determinations in SHR, Wistar-Kyoto rats (WKY), and Sprague-Dawley rats (SD). During euvolemia SHR exhibited enhanced TGF activity. In the same animals acute VE was achieved by infusion of saline (5 ml ⋅ h-1 ⋅ 100 g body wt-1). VE led to resetting of TGF in all three strains. Maximal SFP responses, elicited by a 30-40 nl/min loop of Henle perfusion rate, decreased from 19 to 12 mmHg in SHR and, on average, from 11 to 5 mmHg in WKY and SD ( P < 0.001). Tubular flow rate producing a half-maximal response (turning point) shifted to higher flow rates during VE, from 12 to 14 nl/min in SHR and from 15 to 19 nl/min in WKY. Administration of the AT1 receptor blocker candesartan (0.05 mg/kg iv) during sustained VE decreased TGF-mediated reductions in SFP in SHR and slightly increased the turning point in WKY. Nevertheless, other parameters of TGF activity were unaffected by AT1 receptor blockade. In conclusion, young SHR possess the ability to reset TGF activity in response to VE to a degree similar to compensatory adjustments in WKY. However, TGF remains enhanced in SHR during VE. ANG II and its action on AT1 receptors are in part responsible for the exaggerated SFP responses in young SHR during VE.
Modelling and Optimization of Polycaprolactone Ultrafine-Fibres Electrospinning Process Using Response Surface Methodology

Electrospun fibres have gained broad interest in biomedical applications, including tissue engineering scaffolds, due to their potential in mimicking extracellular matrix and producing structures favourable for cell and tissue growth. The development of scaffolds often involves multivariate production parameters and multiple output characteristics to define product quality. In this study on electrospinning of polycaprolactone (PCL), response surface methodology (RSM) was applied to investigate the determining parameters and find optimal settings to achieve the desired properties of fibrous scaffold for acetabular labrum implant. The results showed that solution concentration influenced fibre diameter, while elastic modulus was determined by solution concentration, flow rate, temperature, collector rotation speed, and interaction between concentration and temperature. Relationships between these variables and outputs were modelled, followed by an optimization procedure. Using the optimized setting (solution concentration of 10% w/v, flow rate of 4.5 mL/h, temperature of 45 °C, and collector rotation speed of 1500 RPM), a target elastic modulus of 25 MPa could be achieved at a minimum possible fibre diameter (1.39 ± 0.20 µm). This work demonstrated that multivariate factors of production parameters and multiple responses can be investigated, modelled, and optimized using RSM.
Contributions of Bioactive Molecules in Stem Cell-Based Periodontal Regeneration

Periodontal disease is a widespread disease, which without proper treatment, may lead to tooth loss in adults. Because stem cells from the inflammatory microenvironment created by periodontal disease exhibit impaired regeneration potential even under favorable conditions, it is difficult to obtain satisfactory therapeutic outcomes using traditional treatments, which only focus on the control of inflammation. Therefore, a new stem cell-based therapy known as cell aggregates/cell sheets technology has emerged. This approach provides sufficient numbers of stem cells with high viability for treating the defective site and offers new hope in the field of periodontal regeneration. However, it is not sufficient for regenerating periodontal tissues by delivering cell aggregates/cell sheets to the impaired microenvironment in order to suppress the function of resident cells. In the present review, we summarize some promising bioactive molecules that act as cellular signals, which recreate a favorable microenvironment for tissue regeneration, recruit endogenous cells into the defective site and enhance the viability of exogenous cells.
Differential effect of amino acid infusion route on net hepatic glucose uptake in the dog.

Concomitant portal infusion of gluconeogenic amino acids (GNGAA) and glucose significantly reduces net hepatic glucose uptake (NHGU), in comparison with NHGU during portal infusion of glucose alone. To determine whether this effect on NHGU is specific to the portal route of GNGAA delivery, somatostatin, intraportal insulin (3-fold basal) and glucagon (basal), and intraportal glucose (to increase the hepatic glucose load by ∼50%) were infused for 240 min. GNGAA were infused peripherally into a group of dogs (PeAA), at a rate to match the hepatic GNGAA load in a group of dogs that were given the same GNGAA mixture intraportally (PoAA) at 7.6 μmol ⋅ kg-1 ⋅ min-1(9). The arterial blood glucose concentrations and hepatic glucose loads were the same in the two groups, but NHGU (-0.9 ± 0.2 PoAA and -2.1 ± 0.5 mg ⋅ kg-1 ⋅ min-1in PeAA, P < 0.05) and net hepatic fractional extraction of glucose (2.6 ± 0.7% in PoAA vs. 5.9 ± 1.4% in PeAA, P < 0.05) differed. Neither the hepatic loads nor the net hepatic uptakes of GNGAA were significantly different in the two groups. Net hepatic glycogen synthesis was ∼2.5-fold greater in PeAA than PoAA ( P < 0.05). Intraportal, but not peripheral, amino acid infusion suppresses NHGU and net hepatic glycogen synthesis in response to intraportal glucose infusion.
Effects of 17β-estradiol on the baroreflex control of sympathetic activity in conscious ovariectomized rats.

The effects of chronic treatment with 17β-estradiol on baroreflex control of sympathetic activity were examined in conscious unrestrained ovariectomized rats. Baroreflex function was evaluated by logistic sigmoidal analysis of the relationships between changes in mean arterial pressure (MABP) and changes in heart rate (HR) and splanchnic nerve activity (SNA) when MABP was rapidly increased to 150 mmHg by intravenous phenylephrine after its reduction to 50 mmHg by intravenous nitroprusside. These baroreflex function curves were similar in vehicle- and estradiol-treated rats. However, after a 30-min infusion of vasopressin in vehicle-treated rats, the curve for HR was shifted downward, and the upper plateau and maximum gain for the SNA curve were reduced. These effects were abolished by estradiol. A 30-min phenylephrine infusion had no effect on the baroreflex curves. Thus estrogen can modulate the action of vasopressin on baroreflex control of sympathetic outflow and thereby participate in cardiovascular regulation.
Effect of acidosis on Ca2+uptake and release by sarcoplasmic reticulum of intact rat ventricular myocytes.

The effect of acidosis on Ca2+ uptake and release by the sarcoplasmic reticulum (SR) of rat ventricular myocytes has been investigated. Intracellular Ca2+concentration ([Ca2+]i) was monitored using fura 2; the L-type Ca2+ current ( I Ca) was monitored using the perforated patch-clamp technique. Acidosis was produced either by superfusing the cells with an acid solution (intracellular and extracellular acidosis) or by NH4Cl withdrawal (intracellular acidosis). Both types of acidosis increased the amplitude, and slowed the declining phase, of the Ca2+transient. Application of caffeine produced a rise of [Ca2+]i, which declined in the continued presence of caffeine; the declining phase was slowed by the acid solution but was unaffected by NH4Cl withdrawal. Acidosis decreased the fraction of the caffeine-induced release that was released by electrical stimulation but had no effect on I Ca. It is concluded that acidosis inhibits SR Ca2+ uptake and Ca2+-induced Ca2+ release in intact myocytes but that these effects are compensated by an increase in SR Ca2+ content secondary to a rise in cytoplasmic [Ca2+].
Electrospun F18 Bioactive Glass/PCL—Poly (ε-caprolactone)—Membrane for Guided Tissue Regeneration

Barrier membranes that are used for guided tissue regeneration (GTR) therapy usually lack bioactivity and the capability to promote new bone tissue formation. However, the incorporation of an osteogenic agent into polymeric membranes seems to be the most assertive strategy to enhance their regenerative potential. Here, the manufacturing of composite electrospun membranes made of poly (ε-caprolactone) (PCL) and particles of a novel bioactive glass composition (F18) is described. The membranes were mechanically and biologically tested with tensile strength tests and tissue culture with MG-63 osteoblast-like cell line, respectively. The PCL-F18 composite membranes demonstrated no increased cytotoxicity and an enhanced osteogenic potential when compared to pure PCL membranes. Moreover, the addition of the bioactive phase increased the membrane tensile strength. These preliminary results suggested that these new membranes can be a strong candidate for small bone injuries treatment by GTR technique.
Muscular long-chain fatty acid content during graded exercise in humans.

We measured the content of long-chain fatty acids (LCFA) in biopsies obtained from the vastus lateralis muscle in humans at rest and after different exercise intensities. Nine volunteers exercised at 65% of maximal oxygen uptake (V˙o 2 max) for 40 min and at 90% of V˙o 2 max for another 15 min on a Krogh bicycle ergometer. LCFA measured in muscle tissue averaged 76 ± 5 nmol/g wet wt at rest, decreased significantly after exercise at 65% V˙o 2 max to 48 ± 4 nmol/g wet wt, and increased to 68 ± 5 nmol/g wet wt ( P < 0.05) after high-intensity exercise. The calculated myocyte LCFA content at rest amounted to 69 ± 5 nmol/g wet wt, decreased by 43% ( P < 0.05) after exercise at 65% ofV˙o 2 max, and subsequently increased by 54% after exercise at 90% ofV˙o 2 max( P < 0.05) compared with the values obtained at the lower workload. The blood plasma LCFA concentration during the low-intensity exercise (366 ± 23 nmol/ml) was similar to the values obtained at rest (372 ± 31 nmol/ml) but decreased significantly during the high-intensity workload (249 ± 49 nmol/ml). From these data it is proposed that 1) in human skeletal muscle, metabolism rather than cellular availability of LCFA governs the rate of LCFA utilization at rest and during exercise, and 2) consequently reduction in muscle LCFA oxidation during high-intensity exercise (e.g., 90%V˙o 2 max) is due primarily to a decrease in mitochondrial LCFA oxidation rate rather than an insufficient cellular availability of LCFA.
Effect of Farmyard Manure Combined with Some Phosphate Sources on the Productivity of Canola Plants Grown on a Sandy Soil.

A field experiment was carried out at Ismailia Agriculture Research Station during 2008 to study the effect of phosphate derived from either superphosphate fertilizer or phosphate ore individually and combined with farmyard manure (FYM) and phosphate dissolving bacteria (PDB) on vegetative growth, yield, nutrient status and oil quality of canola plants. Obtained results showed that, some characters of canola plants such as plant height, number of pods/ plant, dry pod weight g/ plant, straw and seed yields, were increased with addition of superphosphate or ore phosphate individually and combined with FYM. The highest values of growth parameters were recorded in case of phosphate ore combined with FYM + PDB. Also N, P and K concentrations and uptake by canola plants behaved a similar trend with that obtained at the vegetative growth. Total oil and protein yields were enhanced by the different applied phosphate sources individually or combined with FYM. Phosphate ore + FYM + PDB induced the greatest values of total oil and protein yields.
Systemic administration of the NF-κB inhibitor curcumin stimulates muscle regeneration after traumatic injury.

Skeletal muscle is often the site of tissue injury due to trauma, disease, developmental defects or surgery. Yet, to date, no effective treatment is available to stimulate the repair of skeletal muscle. We show that the kinetics and extent of muscle regeneration in vivo after trauma are greatly enhanced following systemic administration of curcumin, a pharmacological inhibitor of the transcription factor NF-κB. Biochemical and histological analyses indicate an effect of curcumin after only 4 days of daily intraperitoneal injection compared with controls that require >2 wk to restore normal tissue architecture. Curcumin can act directly on cultured muscle precursor cells to stimulate both cell proliferation and differentiation under appropriate conditions. Other pharmacological and genetic inhibitors of NF-κB also stimulate muscle differentiation in vitro. Inhibition of NF-κB-mediated transcription was confirmed using reporter gene assays. We conclude that NF-κB exerts a role in regulating myogenesis and that modulation of NF-κB activity within muscle tissue is beneficial for muscle repair. The striking effects of curcumin on myogenesis suggest therapeutic applications for treating muscle injuries.
Identification of a functional Ca2+-sensing receptor in normal human gastric mucous epithelial cells.

The purpose of the present study was to determine whether human gastric mucous epithelial cells express a functional Ca2+-sensing receptor (CaR). Human gastric mucous epithelial cells were isolated from surgical tissues and cultured on glass coverslips, plastic dishes, or porous membrane filters. Cell growth was assessed by the MTT assay, CaR localization was detected by immunohistochemistry and confocal microscopy, CaR protein expression was assessed by Western immunoblotting, and intracellular Ca2+ concentration ([Ca2+]i) was determined by fura 2 spectrofluorometry. In paraffin sections of whole stomach, we found strong CaR immunohistochemical staining at the basolateral membrane, with weak CaR-staining at the apical membrane in mucous epithelial cells. Confocal microscopy of human gastric mucous epithelial cell cultures showed abundant CaR immunofluorescence at the basolateral membrane and little to no CaR immunoreactivity at the apical membrane. Western immunoblot detection of CaR protein in cell culture lysates showed two significant immunoreactive bands of 140 and 120 kDa. Addition of extracellular Ca2+ to preconfluent cultures of human gastric mucous epithelial cells produced a significant proliferative response. Changes in [Ca2+]iwere also observed in response to graded doses of extracellular Ca2+ and Gd3+. The phospholipase C inhibitor U-73122 specifically inhibited Gd3+-induced changes in [Ca2+]iin the gastric mucous epithelial cell cultures. In conclusion, we have identified the localization of a functional CaR in human gastric mucous epithelial cells.
Diversity of aquatic macrophytes in relation to environmental factors in the Slatina river (Slovakia)

Distribution and plant mass of aquatic macrophytes, and their relation to environmental conditions was studied in the submontane-colline Slatina river in 2004. Diversity of macrophytes was low, only 8 vascular plants, 3 mosses and group Algae filamentosae were found. Myriophyllum spicatum is dominant species, Fontinalis antipyretica, Rhynchostegium riparioides and Algae filamentosae are frequent. Interactions between flow class, bed material, depth of water and the first three mentioned macrophytes, as well as Jungermannia leiantha were detected. Sparganium erectum prefers more antrophogenic conditions and Myriophyllum spicatum prefers the light. According to cluster analysis, three distinct and ecologically well separated parts of the river were identified. Based on Reference index, poor ecological status for the studied part of the Slatina river was estimated.