Miracle-dz/UniFAR-FTUs huggingface dataset:
Thickness of the Ligamentum Flavum: Correlation with Age and Its Asymmetry-An Magnetic Resonance Imaging Study

Study Design A retrospective radiological study of the ligamentum flavum (LF). Purpose This study is an attempt to measure and compare the thickening of the LF on both the sides with the use of magnetic resonance imaging, to investigate if there is a predominant tendency to thicken a specific side and also to determine if a correlation between the thickening of the LF and increasing age exists. Overview of Literature Even though many studies measured the thickness of the LF, very few have compared it on each side, or determined its correlation with age. Methods The thickness of LF was measured at the L3-4, L4-5, L5-S1 levels on both sides using the magnetic resonance images of 200 patients (n=1,200). The sample population was divided into three groups: 21-40 years, 41-60 years, and 61-80 years. The data was analyzed statistically, comparing the thickness of LF on both sides and in various age-groups. Results The thickness of the LF was found to increase with age; however, there were several younger instances with thicknesses >4 mm. The mean thickness of the right LF at different spinal levels was measured (L3-L4=3.38±0.94 mm, L4-L5=3.70±1.16 mm, and L5-S1=3.65±1.16 mm) while the mean thickness of the left LF was higher (L3-L4=3.52±0.99 mm, L4-L5=3.84±1.12 mm, and L5-S1=3.78±1.24 mm). Conclusions The LF thickness does not appear to have any side dominance; however, it tends to thicken with increasing age.
DoSVis: Document Stance Visualization

Text visualization techniques often make use of automatic text classification methods. One of such methods is stance analysis, which is concerned with detecting various aspects of the writer's attitude towards utterances expressed in the text. Existing text visualization approaches for stance classification results are usually adapted to textual data consisting of individual utterances or short messages, and they are often designed for social media or debate monitoring tasks. In this paper, we propose a visualization approach called DoSVis (Document Stance Visualization) that focuses instead on individual text documents of a larger length. DoSVis provides an overview of multiple stance categories detected by our classifier at the utterance level as well as a detailed text view annotated with classification results, thus supporting both distant and close reading tasks. We describe our approach by discussing several application scenarios involving business reports and works of literature. (Less)
Geometrical room geometry estimation from room impulse responses

Room geometry estimation from corresponding Room Impulse Responses (RIRs) has attracted much attention in recent years, and a key challenge is to find the first order image source locations from the RIRs under different environments. Unlike the existing approaches which require a priori knowledge of the room or require some ideal conditions, this paper proposes an intuitive geometrical method based on the acoustical image source model. The proposed approach does not need any a priori knowledge of the room, only the RIRs from one arbitrary source location to five arbitrary receiving locations. The first order image sources of the walls in a room are identified first, then the room geometry is estimated based on the wall locations using a geometrical approach. Simulations with 2D and 3D convex polyhedral rooms demonstrate the feasibility and the precision of the proposed approach is discussed.
On the restricted ordinal theorem

The proposition that a decreasing sequence of ordinals necessarily terminates has been given a new, and perhaps unexpected, importance by the rôle which it plays in Gentzen's proof of the freedom from contradiction of the “reine Zahlentheorie. ” Gödel's construction of non-demonstrable propositions and the establishment of the impossibility of a proof of freedom from contradiction, within the framework of a certain type of formal system, showed that a proof of freedom from contradiction could be found only by transcending the axioms and proof processes of that formal system. Gentzen's proof succeeds by utilising transfinite induction to prove that certain sequences of reduction processes, enumerated by ordinals less than ε (the first ordinal to satisfy ε = ὡ) are finite. Were it possible to prove the restricted ordinal theorem, that a descending sequence of ordinals, less than ε, is finite, in Gentzen's “reine Zahlentheorie,” then it would be possible to determine a contradiction in that number system. In his paper, Gentzen proves the theorem of transfinite induction, which he requires, by an intuitive argument. There is also a method of reducing transfinite induction, for ordinals less than ε, to a number-theoretic principle given by Hilbert and Bernays, and a similar method by Ackermann. None of these proofs of transfinite induction is finitist.
Using 3'-azido-2',3'-dideoxythymidine (AZT) to prevent perinatal human immunodeficiency virus transmission and risk of transplacental carcinogenesis.

A major breakthrough in the perinatal human immunodeficiency virus (HIV) epidemic occurred in 1994 when interim data from the Pediatric AIDS (i.e., acquired immunodeficiency syn-drome) Clinical Trials Group protocol 076 were released (1). The results of this placebo-controlled trial demonstrated that a specific regimen of zidovudine (3 (cid:56) -azido-2 (cid:56) ,3 (cid:56) -dideoxy-thymidine or AZT) administered to a group of HIV-infected women during pregnancy and labor and to their newborns was relatively safe and highly effective, reducing the risk of perinatal HIV transmission by about two thirds (1). After of to reduce recommendations AZT signifi-cant risk mother-to-child HIV the United States. 650
Characteristics of Salmonella enterica Serovar 4,[5],12:i:- as a Monophasic Variant of Serovar Typhimurium

Salmonella enterica subspecies enterica serovar 4,[5],12:i:- (S. 4,[5]12:i:-) is believed to be a monophasic variant of S. enterica serovar Typhimurium (S. Typhimurium). This study was conducted to corroborate this hypothesis and to identify the molecular and phenotypic characteristics of the S. 4,[5]12:i:- isolates in Japan. A total of 51 S. 4,[5]12:i:- isolates derived from humans, cattle, swine, chickens, birds, meat (pork), and river water in 15 prefectures in Japan between 2000 and 2010 were analyzed. All the S. 4,[5],12:i:- isolates were identified as S. Typhimurium by two different polymerase chain reactions (PCR) for identification of S. Typhimurium. Of the 51 S. 4,[5],12:i:- isolates, 39 (76.5%) harbored a 94-kb virulence plasmid, which is known to be specific for S. Typhimurium. These data suggest that the S. 4,[5],12:i:- isolates are monophasic variants of S. Typhimurium. The flagellar phase variation is induced by three adjacent genes (fljA, fljB, and hin) in the chromosome. The results of PCR mapping of this region and comparative genomic hybridization analysis suggested that the deletion of the fljAB operon and its flanking region was the major genetic basis of the monophasic phenotype of S. 4,[5],12:i:-. The fljAB operon and hin gene were detectable in eight of the S. 4,[5],12:i:- isolates with common amino acid substitutions of A46T in FljA and R140L in Hin. The introduction of these mutations into S. Typhimurium isolates led to the loss of selectability of isolates expressing the phase 2 H antigen. These data suggested that a point mutation was the genetic basis, at least in part, of the S. 4,[5],12:i:- isolates. The results of phenotypic analysis suggested that the S. 4,[5],12:i:- isolates in Japan consist of multiple distinct clones. This is the first detailed characterization of the S. 4,[5],12:i:- isolates derived from various sources across Japan.
Survival Analysis of Coal Workers’ Pneumoconiosis (CWP) Patients in a State-Owned Mine in the East of China from 1963 to 2014

To investigate the mortality probability, life expectancy of coal workers’ pneumoconiosis (CWP), and related factors of life expectancy, a total of 495 patients with CWP were diagnosed and reported from 1963 to 2014 in a state-owned mine in the east of China. The life table method, log rank method, and Cox regression model were used for survival analysis. 95 out of 495 CWP died during this period. The mortality rate was 19.19%. The average life span was 12.1 (0.0–33.2) years and average death age was 57.4 (33.0–83.0) years. The life table indicated that overall mortality probability increased with the age of CWP patients. Life expectancy of CWP patients was prolonged to 4.3, 1.4, 1.2, and 1.4 years without death caused by pneumoconiosis, tuberculosis, lung cancer, and pulmonary heart disease respectively. The survival curve of CWP patients without pulmonary tuberculosis was higher (average 37.9 years) than patients with pulmonary tuberculosis (average 34.1 years). There was significant difference observed (χ2 = 6.196, p < 0.05). Three risk factors that include initial dust exposure year, age of onset, and first diagnostic stage were put into the Cox regression model for evaluation. The data indicated that prevention and treatment of CWP complication is important to improve patients’ survival rates.
Assessment of Hazardous Metal Concentrations in Organs of Selected Game Animals in the Natural Environment

The study was conducted to determine the levels of hazardous metals in game animals. A total of eighteen (18) animals which comprised six species of three (3) each from the same location were trapped or hunted and sacrificed. Organs analyzed for hazardous metal levels were skin, liver, kidney and heart using Atomic Absorption Spectrometry and content expressed in mgkg-1. The statistical analysis was done with Genstat (2007). Results obtained showed that all the hazardous metals under study were present in the organs at variable concentrations. Lead: skin (0.18 – 0.46) mgkg-1, liver (0.03 – 0.4) mgkg-1, heart (0.25 – 0.58) mgkg-1 and kidney (0.38 1.12) mgkg-1; Cadmium: skin (0.08 – 0.58) mgkg-1 and kidney (0.09 – 0.7) mgkg-1; Zinc : skin ( 0.46 – 0.66) mgkg-1, liver (90.04 – 0.82) mgkg-1, heart (0.42 – 1.21) mgkg-1 and kidney (0.43 – 1.58) mgkg-1; Copper: skin (6.13 – 12.57) mgkg-1, liver (5.1 – 9.56) mgkg-1, heart (6.89 - 15.15) mgkg-1 and kidney (7.63 – 24.87) mgkg-1; Iron : skin (9.53 – 26.35) mgkg-1, liver (8.07 -28.08) mgkg-1, heart (13.83 - 46.40) mgkg-1 and kidney (12.43 – 47.61) mgkg-1. Iron was highly (p <0.05) deposited in all species of animals in the heart 19.88 mgkg-1, 46.40 mgkg-1, 40.83 mgkg-1, 13.83 mgkg-1 and 41.38 mgkg-1 respectively for civet (Civettictis civeta), antelope (Antilocapra americana), grasscutter (Thryonomys swiderianus), hedgehog (Atelerix albiventris) and bush dog (Speothos venaticus) except the bush rat (Rattus fuscipes) that had its highest deposition (46.71 mgkg-1) in the kidney. Copper was also highly deposited in animals after iron with higher concentrations in heart and kidney. The highest concentration was recorded for bush rat (Rattus fuscipes) (15.15 mgkg-1) in heart and 24.87 mgkg-1 in kidney. Due to bioaccumulation of hazardous metals, care should be taken in patronizing bushmeat obtained from the studied ecosystem since failure could be perilous to the health of consumers as their concentrations are beyond the safe limits for the respective metals. It is further recommended that environmental safety principles for safe disposal of hazardous metals are appropriately carried out.
Expression cloning of a human granulocyte colony-stimulating factor receptor: a structural mosaic of hematopoietin receptor, immunoglobulin, and fibronectin domains

We report the isolation from a placental library, of two cDNAs that can encode high affinity receptors for granulocyte colony-stimulating factor (G-CSF) when expressed in COS-7 cells. The cDNAs are predicted to encode integral membrane proteins of 759 and 812 amino acids in length. The predicted extracellular and membrane spanning sequences of the two clones are identical, as are the first 96 amino acids of their respective cytoplasmic regions. Different COOH termini of 34 or 87 residues are predicted for the two cDNAs, due apparently to alternate splicing. The receptor with the longer cytoplasmic domain is the closest human homologue of the murine G-CSF receptor recently described by Fukunaga et al. (Fukunaga, R., E. Ishizaka-Ikeda, Y. Seto, and S. Nagata. 1990. Cell. 61:341). A hybridization probe derived from the placental G-CSF receptor cDNA detects a approximately 3-kb transcript in RNAs isolated from placenta and a number of lymphoid and myeloid cells. The extracellular region of the G-CSF receptors is composed of four distinct types of structural domains, previously recognized in other cell surface proteins. In addition to the two domains of the HP receptor family-defining region (Patthy, L. 1990. Cell. 61:13) it incorporates one NH2-terminal Ig-like domain, and three additional repeats of fibronectin type III-like domains. The presence of both an NH2-terminal Ig-like domain and multiple membrane-proximal FN3-like domains suggests that the G-CSF receptor may be derived from an ancestral NCAM-like molecule and that the G-CSF receptor may function in some adhesion or recognition events at the cell surface in addition to the binding of G-CSF.
Chronic constipation: no more idiopathic, but a true neuropathological entity

Chronic constipation is still considered a functional or idiopathic disorder. However, in recent years there is evidence that its pathopysiological grounds may be actually due to a complex system of abnormalities of the enteric nervous system of these patients. In particular, as reported in this review, the enteric glial cells seem to be constantly involved in constipated patients, suggesting that (at least some forms of) constipation should be considered as true neuro-gliopathies.
Effect of Margin Designs on the Marginal Adaptation of Zirconia Copings

Objective The aim of this in vitro study was to investigate the effect of Shoulder versus Chamfer margin design on the marginal adaptation of zirconia (Zr) copings. Materials and Methods 40 extracted molar teeth were mounted in resin and prepared for zirconia crowns with two margin preparation designs (20=Shoulder and 20=Chamfer). The copings were manufactured by Cercon® (DeguDent GmbH, Germany) using the CAD/CAM system for each tooth. They were tried on each tooth, cemented, thermocycled, re-embedded in resin and were subsequently cross sectioned centrally into two equal mesial and distal halves. They were examined under electron microscope at 200 X magnification and the measurements were recorded at 5 predetermined points in micrometers (µm). Results The overall mean marginal gap for the two groups was found to be 206.98+42. 78µm with Shoulder margin design (Marginal Gap=199.50+40.72µm) having better adaptation compared to Chamfer (Marginal Gap=214.46+44.85µm). The independent-samples t-test showed a statistically non-significant difference (p=.113) between the means of marginal gap for Shoulder and Chamfer margin designs and the measurements were recorded at 5 predetermined points for the two groups. Conclusions The Chamfer margin design appeared to offer the same adaptation results as the Shoulder margin design.
Supporting Online Material Materials and Methods Figs. S1 to S8 Tables S1 to S4 References a Stochastic Single-molecule Event Triggers Phenotype Switching of a Bacterial Cell

By monitoring fluorescently labeled lactose permease with single-molecule sensitivity, we investigated the molecular mechanism of how an Escherichia coli cell with the lac operon switches from one phenotype to another. At intermediate inducer concentrations, a population of genetically identical cells exhibits two phenotypes: induced cells with highly fluorescent membranes and uninduced cells with a small number of membrane-bound permeases. We found that this basal-level expression results from partial dissociation of the tetrameric lactose repressor from one of its operators on looped DNA. In contrast, infrequent events of complete dissociation of the repressor from DNA result in large bursts of permease expression that trigger induction of the lac operon. Hence, a stochastic single-molecule event determines a cell's phenotype. G enetically identical cells in the same environment can exhibit different phenotypes, and a single cell can switch between distinct phenotypes in a stochastic manner (1–4). In the classic example of lactose metabolism in Escherichia coli, the lac genes are fully expressed for every cell in a population under high extra-cellular concentrations of inducers, such as the lactose analog methyl-b-D-thiogalactoside (TMG). However, at moderate inducer concentrations, the lac genes are highly expressed in only a fraction of a population, which may confer a fitness advantage for the entire population (5). We studied the molecular mechanism that controls the sto-chastic phenotype switching of a single cell. Lactose metabolism is controlled by the lac operon (6, 7), which consists of the lacZ, lacY, and lacA genes encoding b-galactosidase, lactose permease, and transacetylase, respectively. Expression of the operon is regulated by a transcription factor, the lac repressor (8), which dissociates from its specific binding sequences of DNA, the lac operators, in the presence of an inducer to allow transcription (Fig. 1A). The production of the permease increases inducer influx (9), which results in positive feedback on the permease expression level. Above a certain threshold of per-mease numbers, a cell will remain in a phenotype that is capable of lactose metabolism, and below this threshold, a cell will remain in a phenotype that is incapable of lactose metabolism (10, 11). The former has high fluorescence from the cell membrane when the permease is labeled with a yellow fluorescent protein (YFP), whereas the latter has low fluorescence. The image in Fig. 1B shows the coexistence of both phenotypes in a cell population at intermediate inducer concentrations, characterized by the bimodal distributions of fluorescence intensity in Fig. 1C. Although …
Construction and Maintenance of Wireless Mobile Backbone Networks

We study a novel hierarchical wireless networking approach in which some of the nodes are more capable than others. In such networks, the more capable nodes can serve as mobile backbone nodes and provide a backbone over which end-to-end communication can take place. Our approach consists of controlling the mobility of the backbone nodes in order to maintain connectivity. We formulate the problem of minimizing the number of backbone nodes and refer to it as the Connected Disk Cover (CDC) problem. We show that it can be decomposed into the Geometric Disk Cover (GDC) problem and the Steiner Tree Problem with Minimum Number of Steiner Points (STP-MSP). We prove that if these subproblems are solved separately by gamma- and delta-approximation algorithms, the approximation ratio of the joint solution is gamma+delta. Then, we focus on the two subproblems and present a number of distributed approximation algorithms that maintain a solution to the GDC problem under mobility. A new approach to the solution of the STP-MSP is also described. We show that this approach can be extended in order to obtain a joint approximate solution to the CDC problem. Finally, we evaluate the performance of the algorithms via simulation and show that the proposed GDC algorithms perform very well under mobility and that the new approach for the joint solution can significantly reduce the number of mobile backbone nodes.
Locally adaptive estimation methods with application to univariate time series

The paper offers a unified approach to the study of three locally adaptive estimation methods in the context of univariate time series from both theoretical and empirical points of view. A general procedure for the computation of critical values is given. The underlying model encompasses all distributions from the exponential family providing for great flexibility. The procedures are applied to simulated and real financial data distributed according to the Gaussian, volatility, Poisson, exponential and Bernoulli models. Numerical results exhibit a very reasonable performance of the methods.
Objective vs. Self-Reported Physical Activity and Sedentary Time: Effects of Measurement Method on Relationships with Risk Biomarkers

Purpose Imprecise measurement of physical activity variables might attenuate estimates of the beneficial effects of activity on health-related outcomes. We aimed to compare the cardiometabolic risk factor dose-response relationships for physical activity and sedentary behaviour between accelerometer- and questionnaire-based activity measures. Methods Physical activity and sedentary behaviour were assessed in 317 adults by 7-day accelerometry and International Physical Activity Questionnaire (IPAQ). Fasting blood was taken to determine insulin, glucose, triglyceride and total, LDL and HDL cholesterol concentrations and homeostasis model-estimated insulin resistance (HOMAIR). Waist circumference, BMI, body fat percentage and blood pressure were also measured. Results For both accelerometer-derived sedentary time (<100 counts.min−1) and IPAQ-reported sitting time significant positive (negative for HDL cholesterol) relationships were observed with all measured risk factors – i.e. increased sedentary behaviour was associated with increased risk (all p≤0.01). However, for HOMAIR and insulin the regression coefficients were >50% lower for the IPAQ-reported compared to the accelerometer-derived measure (p<0.0001 for both interactions). The relationships for moderate-to-vigorous physical activity (MVPA) and risk factors were less strong than those observed for sedentary behaviours, but significant negative relationships were observed for both accelerometer and IPAQ MVPA measures with glucose, and insulin and HOMAIR values (all p<0.05). For accelerometer-derived MVPA only, additional negative relationships were seen with triglyceride, total cholesterol and LDL cholesterol concentrations, BMI, waist circumference and percentage body fat, and a positive relationship was evident with HDL cholesterol (p = 0.0002). Regression coefficients for HOMAIR, insulin and triglyceride were 43–50% lower for the IPAQ-reported compared to the accelerometer-derived MVPA measure (all p≤0.01). Conclusion Using the IPAQ to determine sitting time and MVPA reveals some, but not all, relationships between these activity measures and metabolic and vascular disease risk factors. Using this self-report method to quantify activity can therefore underestimate the strength of some relationships with risk factors.