Miracle-dz/UniFAR-FTUs huggingface dataset:
Developmental trajectories of competency attainment amongst clinical psychology trainees across field placements.

OBJECTIVE This research aimed to describe the developmental trajectories of clinical psychology trainees across competency domains over multiple placements. METHOD Competency reviews of 252 trainees were completed at mid-placement and end-placement for up to four consecutive placements by 143 field supervisors. Competency was measured across multiple domains using the Clinical Psychology Practicum Competencies Rating Scale. RESULTS There was an overall ascending stepped pattern occurring across all competency domains from early to late placements. The starting point of competency ratings varied across domains with the largest discrepancy between Response to supervision (highest) and Intervention competencies (lowest). There were significant increases from mid-placement to end-placement for all competencies within each of the four placements. There were few significant decreases in competency between different placements and these were largely restricted to the transition from placement one to placement two. CONCLUSIONS This research has the potential to be used as a benchmark to indicate expected levels of competency attainment for trainees across their training, allowing for early identification of difficulties and more targeted remediation plans.
Root orientation of four sorghum cultivars: application to estimate root length density from root counts in soil profiles

The root length density (RLD) distribution in the soil is a key factor for water and nutrient uptake but its direct assessment is not easy. A field method is presented here to assess RLD of sorghum (Sorghum bicolor L. Moench) from the root intersection density (RID) and taking root orientations into account. The method was developed with four varieties cropped in 2006 in Bambey (Senegal) on a sandy soil, and validated on the basis of independent data obtained on two other varieties cropped in 2008 in Thies in Senegal on a sandy loam soil. Sets of 1 × 10-3 m3 cubic undisturbed soil samples were collected at different positions and at three different dates for the four varieties during the first experiment. RIDs of thick and fine roots were assessed on the sides of the soil cubes and RLDs were measured in the volumes. Fine roots appeared to be isotropic when thick roots were horizontal near the surface and gradually became vertical in deeper horizons. RLD was tenfold lower for thick roots than for fine ones. This led to the development of a model to determine RLD from RID. The relationship for all roots was modeled as RLD = RID × CO, where the root orientation coefficient (CO) is equal to 1.97, indicating that the global root distribution is almost isotropic (CO = 2 for isotropic conditions). The model was validated on the basis of independent data from the second experiment. This model enables RLD mapping and description of RLD variability on sorghum from RID observations on trench profiles (with 10 × 10 cm or 5 × 5 cm surface area used for RID measurement).
Evolution of network relations, enterprise learning, and cluster innovation networks: the case of the Yuyao plastics industry cluster

ABSTRACT Industrial clusters have become a crucial carrier of economic globalisation. However, constrained by the nation’s industrial development model, clusters in China have long been relegated to a low-end position. This study, based on the perspective of focal enterprises, analysed the relationships among network relations, enterprise learning, and the evolution of cluster innovation networks and explored the three formation stages of a cluster innovation network by examining the example of the Yuyao plastics industry cluster. The results showed (1) that focal enterprises exert spin-off effects on enterprise learning and are critical for innovation networking and (2) that weak network ties facilitate exploratory learning, whereas strong ties influence exploitative learning. In addition, tie strength showed a coevolutionary feature. Furthermore, the results showed that (3) this evolutionary process demonstrated a phase-changing characteristic, with government policy exhibiting substantial effects on focal enterprises, organisational learning mechanisms, and cluster innovation networks.
The Megameatus, Intact Prepuce Variant of Hypospadias: Use of the Inframeatal Vascularized Flap for Surgical Correction

Introduction The megameatus intact prepuce (MIP) variant of hypospadias is a rare variant of hypospadias that is diagnosed either early at the time of circumcision or later as the foreskin is retracted. The true incidence of the anomaly is difficult to determine precisely as some patient never come to medical attention but is felt to under 5% of all cases of hypospadias. The purposes of this study are to review the embryology and clinical findings of MIP and then, in light of a personal experience, present a series of patients evaluated for MIP who were treated with a modification of the Mathieu technique. Materials and methods A PubMed search of all articles in the MIP variant of hypospadias was carried out followed by an exhaustive review of the literature. The charts of all patients evaluated and treated at Boston Children’s Hospital by MC between 2007 and 2017 were reviewed retrospectively. The patients were divided into two groups: those who underwent the standard procedure and those who underwent a repair using a modification of the Mathieu procedure using an inframeatal flap. Results The embryologic explanation of the MIP variant is not clear but failure of the distal, glanular portion of the urethra to tubularize results in spectrum of abnormality characterized by a deep glanular groove and an abnormal opening of the urethra anywhere from the mid-glans to a subcoronal location. Surgical repair is complicated by a wide distal urethra which may be injured if not properly identified. Overall good outcomes were noted with one patient experiencing a urethra cutaneous fistula in the first group and one patient having a mild glans dehiscence in the second. Conclusion The MIP variant of hypospadias is a rare variant of hypospadias that presents as a spectrum of urethral anomaly. Surgical repair may not always be necessary but if surgical repair is carried out, the Mathieu technique modification may offer better anatomic delineation of the urethra and will provide an extra layer of tissue to cover the reconstructed urethra. Low complication rates should be expected with adequate functional outcome such as a normal urinary stream. In addition, criteria for selecting patients for surgical repair are provided.
Differential Expression of Rubisco in Sporophytes and Gametophytes of Some Marine Macroalgae

Rubisco (ribulose-1, 5-bisphosphate carboxylase/oxygenase), a key enzyme of photosynthetic CO2 fixation, is one of the most abundant proteins in both higher plants and algae. In this study, the differential expression of Rubisco in sporophytes and gametophytes of four seaweed species — Porphyra yezoensis, P. haitanensis, Bangia fuscopurpurea (Rhodophyte) and Laminaria japonica (Phaeophyceae) — was studied in terms of the levels of transcription, translation and enzyme activity. Results indicated that both the Rubisco content and the initial carboxylase activity were notably higher in algal gametophytes than in the sporophytes, which suggested that the Rubisco content and the initial carboxylase activity were related to the ploidy of the generations of the four algal species.
Changes in cognitive function after pediatric intensive care unit rounds: a prospective study

Abstract Background: Mental fatigue is impaired cognitive function induced by engaging in cognitively demanding activities. Pediatric intensive care unit (PICU) rounds are demanding and may be a cause of impaired cognitive functioning. The purpose of this study is to evaluate if PICU rounds induce poorer performance on cognitive tasks after rounds compared to before rounds and assess the feasibility of cognitive testing in the PICU. Methods: This was a prospective study of residents in the PICU. Participants were evaluated before and after rounds on a single day, consisting of two tests of cognitive function that are sensitive to mental fatigue, the cognitive estimation test (CET) and the repeatable episodic memory test (REMT). Results: Thirty residents participated. The mean length of rounds was 191 min (SD 33.8 min), the mean number of patients rounded on by the team was 14.9 (SD 2.3) and the median patients presented by the participant was two (range 0–6). The average number of words recalled on the REMT was significantly lower after rounds compared to before (29.6 vs. 31.2, p < 0.05). There were significantly more falsely recalled words after rounds (1.3 vs. 0.7, p=0.02). There was a correlation between worsening performance and later time of testing in the 4-week PICU rotation (r=0.42, p < 0.02). There were no differences in performance on the CET. Conclusions: PICU rounds induced impairments on cognitive testing but the effect size is small and not consistent across tests. There is an increased susceptibility to impaired cognition induced by rounds over the course of a rotation, this finding merits further investigation.
Costs and cost-effectiveness of a mental health intervention for war-affected young persons: decision analysis based on a randomized controlled trial.

BACKGROUND One billion children live in war-affected regions of the world. We conducted the first cost-effectiveness analysis of an intervention for war-affected youth in sub-Saharan Africa, as well as a broader cost analysis. METHODS The Youth Readiness Intervention (YRI) is a behavioural treatment for reducing functional impairment associated with psychological distress among war-affected young persons. A randomized controlled trial was conducted in Freetown, Sierra Leone, from July 2012 to July 2013. Participants (n = 436, aged 15-24) were randomized to YRI (n = 222) or care as usual (n = 214). Functional impairment was indexed by the World Health Organization Disability Assessment Scale; scores were converted to quality-adjusted life years (QALYs). An 'ingredients approach' estimated financial and economic costs, assuming a societal perspective. Incremental cost-effectiveness ratios (ICERs) were also expressed in terms of gains across dimensions of mental health and schooling. Secondary analyses explored whether intervention effects were largest among those worst-off (upper quartile) at baseline. RESULTS Retention at 6-month follow-up was 85% (n = 371). The estimated economic cost of the intervention was $104 per participant. Functional impairment was lower among YRI recipients, compared with controls, following the intervention but not at 6-month follow-up, and yielded an ICER of $7260 per QALY gained. At 8-month follow-up, teachers' interviews indicated that YRI recipients observed higher school enrolment [P < 0.001, odds ratio (OR) 8.9], denoting a cost of $431 per additional school year gained, as well as better school attendance (P = 0.007, OR 34.9) and performance (P = 0.03, effect size = -1.31). Secondary analyses indicated that the intervention was cost-effective among those worst-off at baseline, yielding an ICER of $3564 per QALY gained. CONCLUSIONS The YRI is not cost-effective at a willingness-to-pay threshold of three times average gross domestic product per capita. However, results indicate that the YRI translated into a range of benefits, such as improved school enrolment, not captured by cost-effectiveness analysis. We also outline areas for modification to improve cost-effectiveness in future trials. TRIAL REGISTRATION clinicaltrials.gov Identifier: RPCGA-YRI-21003.
Sea surface temperature variations in the western Mediterranean Sea over the last 20 kyr: A dual‐organic proxy (UK′37 and LDI) approach

A high-resolution sea surface temperature (SST) reconstruction of the western Mediterranean was accomplished using two independent, algae-based molecular organic proxies, i.e., the U-37(K) index based on long-chain unsaturated ketones and the novel long-chain diol index (LDI) based on the relative abundances of C-28 and C-30 1,13- and 1,15-diols. Two marine records, from the western and eastern Alboran Sea basin, spanning the last 14 and 20kyr, respectively, were studied. Results from the surface sediments suggest that the two proxies presently reflect seasons with similar SST or simply annual mean SST. Both proxy records reveal the transition from the Last Glacial Maximum to the Holocene in the eastern Alboran Sea with an SST increase of approximately 7 degrees C for U-37(K) and 9 degrees C for LDI. Minimum SSTs (10-12 degrees C) are reached at the end of the Last Glacial Maximum and during the last Heinrich event with a subsequent rapid SST increase in LDI-SST toward the beginning of the Bolling period (20 degrees C), while U-37(K)-SST remains constantly low (similar to 12 degrees C). The Bolling-Allerod period is characterized by a rapid increase and subsequent decrease in U-37(K)-SST, while the LDI-SST decrease continuously. Short-term fluctuations in U-37(K)-SST are probably related to the availability of nutrients and seasonal changes. The Younger Dryas is recorded as a short cold interval followed by progressively warmer temperatures. During the Holocene, the general lower U-37(K)-derived temperature values in the eastern Alboran (by approximately 1.5-2 degrees C) suggest a southeastward cold water migration by the western Alboran gyre and divergence in the haptophyte blooming season between both basins. Key Points High-resolution SST reconstruction is performed in the westernmost Mediterranean Two algae-based proxies show the temperature evolution for the last 20 kyr Derived SSTs suggest different growth seasons of alkenone and diol producers
Towards Agent-Based Model Specification of Smart Grid: A Cognitive Agent-Based Computing Approach

A smart grid can be considered as a complex network where each node represents a generation unit or a consumer. Whereas links can be used to represent transmission lines. One way to study complex systems is by using the agent-based modeling (ABM) paradigm. An ABM is a way of representing a complex system of autonomous agents interacting with each other. Previously, a number of studies have been presented in the smart grid domain making use of the ABM paradigm. However, to the best of our knowledge, none of these studies have focused on the specification aspect of ABM. An ABM specification is important not only for understanding but also for replication of the model. In this study, we focus on development as well as specification of ABM for smart grid. We propose an ABM by using a combination of agent-based and complex network-based approaches. For ABM specification, we use ODD and DREAM specification approaches. We analyze these two specification approaches qualitatively as well as quantitatively. Extensive experiments demonstrate that DREAM is a most useful approach as compared with ODD for modeling as well as for replication of models for smart grid.
GWAS of Follicular Lymphoma Reveals Allelic Heterogeneity at 6p21.32 and Suggests Shared Genetic Susceptibility with Diffuse Large B-cell Lymphoma

Non-Hodgkin lymphoma (NHL) represents a diverse group of hematological malignancies, of which follicular lymphoma (FL) is a prevalent subtype. A previous genome-wide association study has established a marker, rs10484561 in the human leukocyte antigen (HLA) class II region on 6p21.32 associated with increased FL risk. Here, in a three-stage genome-wide association study, starting with a genome-wide scan of 379 FL cases and 791 controls followed by validation in 1,049 cases and 5,790 controls, we identified a second independent FL–associated locus on 6p21.32, rs2647012 (ORcombined = 0.64, Pcombined = 2×10−21) located 962 bp away from rs10484561 (r2<0.1 in controls). After mutual adjustment, the associations at the two SNPs remained genome-wide significant (rs2647012:ORadjusted = 0.70, Padjusted = 4×10−12; rs10484561:ORadjusted = 1.64, Padjusted = 5×10−15). Haplotype and coalescence analyses indicated that rs2647012 arose on an evolutionarily distinct haplotype from that of rs10484561 and tags a novel allele with an opposite (protective) effect on FL risk. Moreover, in a follow-up analysis of the top 6 FL–associated SNPs in 4,449 cases of other NHL subtypes, rs10484561 was associated with risk of diffuse large B-cell lymphoma (ORcombined = 1.36, Pcombined = 1.4×10−7). Our results reveal the presence of allelic heterogeneity within the HLA class II region influencing FL susceptibility and indicate a possible shared genetic etiology with diffuse large B-cell lymphoma. These findings suggest that the HLA class II region plays a complex yet important role in NHL.
Impact of Handedness Consistency on Bimanual and Unimanual Continuous Movements

ABSTRACT Bimanual coordination is an essential human function requiring efficient interhemispheric communication to produce coordinated movements. Previous research suggests a “bimanual advantage” phenomenon, where completing synchronized bimanual tasks results in less variability than unimanual tasks. Additionally, of hand dominance has been shown to influence coordinated performance. The present study examined the bimanual advantage in individuals with consistent and inconsistent handedness. It was predicted that participants with consistent handedness would not display a bimanual advantage unlike those with inconsistent handedness. Fifty-six young adults completed a finger-tapping paradigm in five conditions: unimanual tapping with either left or right hand, in-phase bimanual tapping, and out-of phase bimanual tapping led by either left or right hand. Results were not consistent with the hypothesis that participants with consistent handedness displayed the “bimanual advantage”. However, the “bimanual advantage” was not evident for the inconsistent handers when the temporal consistency was measured with either the left or right hand only. Overall, the “bimanual advantage” may be dependent upon consistency of hand preference, as well as the direction of hand dominance.
Thalamocortical and corticothalamic pathways differentially contribute to goal-directed behaviors in the rat

Highly distributed neural circuits are thought to support adaptive decision-making in volatile and complex environments. Notably, the functional interactions between prefrontal and reciprocally connected thalamic nuclei areas may be important when choices are guided by current goal value or action-outcome contingency. We examined the functional involvement of selected thalamocortical and corticothalamic pathways connecting the dorsomedial prefrontal cortex (dmPFC) and the mediodorsal thalamus (MD) in the behaving rat. Using a chemogenetic approach to inhibit projection-defined dmPFC and MD neurons during an instrumental learning task, we show that thalamocortical and corticothalamic pathways differentially support goal attributes. Both pathways participate in adaptation to the current goal value, but only thalamocortical neurons are required to integrate current causal relationships. These data indicate that antiparallel flow of information within thalamocortical circuits may convey qualitatively distinct aspects of adaptive decision-making and highlight the importance of the direction of information flow within neural circuits.
Expression of Hippo pathway genes and their clinical significance in colon adenocarcinoma

Yes-associated protein 1 (YAP1) is a transcriptional regulator of the Hippo pathway, which regulates the development and progression of a number of types of cancer, including that of the colon. In the present study, the expression levels of Hippo pathway genes and their clinical significance were investigated in 458 patients with colon adenocarcinoma (COAD), the most frequently diagnosed neoplastic disease globally, using data obtained from The Cancer Genome Atlas database. Notably, mRNA expression of YAP1 was higher in COAD than in other types of gastrointestinal tract cancer. Expression of YAP1 mRNA was higher in COAD than in normal colon samples and was significantly higher in Tumor-Node-Metastasis (TNM) stages III–IV than in stages I–II. YAP1 protein levels, a protein primarily localized in the nucleus, was greater in TNM stages III–IV than in stages I–II. The level of pYAP1, which is inactive and localized in the cytoplasm, was significantly higher in TNM stages III–IV than in stages I–II. However, the YAP1/pYAP1 ratio, which is representative of activity, was higher in TNM stages III–IV than in stages I–II. High mRNA expression of YAP1, TAZ and TEAD4 was associated with a poor prognosis in patients with COAD. Bioinformatics analysis revealed that YAP1 was associated with DNA duplication, cell proliferation and development. Wnt signaling and transforming growth factor-β signaling were significantly higher in the high-YAP1 group, according to data from Gene Set Enrichment Analysis. Taken together, the results indicate that the subcellular distribution of YAP1 and high mRNA expression of YAP1, TAZ and TEAD4 may be associated with poorer overall survival rates in patients with COAD.
A 55nm time-domain mixed-signal neuromorphic accelerator with stochastic synapses and embedded reinforcement learning for autonomous micro-robots

Even as rapid advances are being made in the areas of deep neural networks (DNNs) and convolutional neural networks (CNNs) with most hardware demonstrations geared towards inference in vision-based platforms [1-5], we recognize that true autonomy in intelligent agents will only emerge when such bio-mimetic systems can perform continuous learning through interactions with the environment. Reinforcement learning (RL) presents one such computational paradigm inspired by behaviorist psychology, where autonomous agents take actions in an environment to maximize a notion of cumulative reward. This concept is deeply rooted in the human brain where dopamine mediated neurotransmitters (in the cortex, striatum and thalamus of the brain) have been shown to encourage reward-motivated behavior in all our social interactions (Fig. 7.4.1). In this paper, we present a 690μW (VCC=1.2V) neuromorphic accelerator fabricated in 55nm CMOS, which: (1) inherits unique properties of stochastic neural networks, (2) leverages recent advances in Q-learning as an implementation of RL, and (3) demonstrates energy-efficient time-domain mixed-signal (TD-MS) circuit architectures, to provide autonomy to a mobile, self-driving micro-robot at the edge of the cloud, with possible applications in disaster relief, reconnaissance and personal robotics.
High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants

ABSTRACT We present here the draft genome sequences of bacterial pathogens of the Araceae family, Xanthomonas axonopodis pv. dieffenbachiae LMG 695 and Xanthomonas campestris pv. syngonii LMG 9055, differing in host range. A comparison between genome sequences will help understand the mechanisms involved in tissue specificity and adaptation to host plants.