Miracle-dz/UniFAR-FTUs huggingface dataset:
Anti-inflammatory effects of Calophyllum inophyllum L . in RAW 264 . 7 cells

Calophyllum inophyllum L. has been used as folk medicine in the treatment of ocular burn and it has demonstrated potential to be an anti-inflammatory agent. The aim of this study was to explore the anti-inflammatory activities of an acetone extract of C. inophyllum L. leaves (CIL). The CIL extract was tested on lipopolysaccharide (LPS)-induced RAW 264.7 cells to evaluate the effect of CIL extract on the expression of nitric oxide (NO) and inducible nitric oxide synthase (iNOS). Results showed that the CIL extract markedly suppressed the LPS-induced production of nitric oxide, as well as the expression of iNOS, cyclooxygenase (COX)-2 and nuclear factor-kappaB (NF-κB) in a dose-dependent manner. LPS-induced microRNA (miR)-146a expression was inhibited by CIL extract, while miR-155 and miR-424 expression was not affected as demonstrated using quantitative RT-PCR analysis. Taken together, these observations show that CIL extract has anti-inflammatory effect, which extends the potential application for prevention of inflammatory diseases, and its mechanism may be partially associated with blocking COX-2 and iNOS of RAW 264.7 cells.
Stretch-activated ion channel Piezo1 directs lineage choice in human neural stem cells

Significance Stem cells make lineage-choice decisions based on a combination of internal and external signals, including mechanical cues from the surrounding environment. Here we show that Piezo1, an ion channel opened by membrane tension, plays an important role in transducing matrix mechanical information to intracellular pathways affecting differentiation in neural stem cells. Piezo1 activity influences whether neural stem cells differentiate along a neuronal or astrocytic lineage. One of the barriers to successful neural stem cell transplantation therapy for neurological disorders lies in directing the fate of transplanted cells. Pharmacological agents aimed at modulating Piezo1 activity may be useful in directing the fate of transplanted neural stem cells toward the desired lineage. Neural stem cells are multipotent cells with the ability to differentiate into neurons, astrocytes, and oligodendrocytes. Lineage specification is strongly sensitive to the mechanical properties of the cellular environment. However, molecular pathways transducing matrix mechanical cues to intracellular signaling pathways linked to lineage specification remain unclear. We found that the mechanically gated ion channel Piezo1 is expressed by brain-derived human neural stem/progenitor cells and is responsible for a mechanically induced ionic current. Piezo1 activity triggered by traction forces elicited influx of Ca2+, a known modulator of differentiation, in a substrate-stiffness–dependent manner. Inhibition of channel activity by the pharmacological inhibitor GsMTx-4 or by siRNA-mediated Piezo1 knockdown suppressed neurogenesis and enhanced astrogenesis. Piezo1 knockdown also reduced the nuclear localization of the mechanoreactive transcriptional coactivator Yes-associated protein. We propose that the mechanically gated ion channel Piezo1 is an important determinant of mechanosensitive lineage choice in neural stem cells and may play similar roles in other multipotent stem cells.
Differential Dynamic and Structural Behavior of Lipid-Cholesterol Domains in Model Membranes

Changes in the cholesterol (Chol) content of biological membranes are known to alter the physicochemical properties of the lipid lamella and consequently the function of membrane-associated enzymes. To characterize these changes, we used steady-state and time resolved fluorescence spectroscopy and two photon-excitation microscopy techniques. The membrane systems were chosen according to the techniques that were used: large unilamellar vesicles (LUVs) for cuvette and giant unilamellar vesicles (GUVs) for microscopy measurements; they were prepared from dipalmitoyl phosphatidylcholine (DPPC) and dioctadecyl phosphatidylcholine (DOPC) in mixtures that are well known to form lipid domains. Two fluorescent probes, which insert into different regions of the bilayer, were selected: 1,6-diphenyl-1,3,5-hexatriene (DPH) was located at the deep hydrophobic core of the acyl chain regions and 2-dimethylamino-6-lauroylnaphthalene (Laurdan) at the hydrophilic-hydrophobic membrane interface. Our spectroscopy results show that (i) the changes induced by cholesterol in the deep hydrophobic phospholipid acyl chain domain are different from the ones observed in the superficial region of the hydrophilic-hydrophobic interface, and these changes depend on the state of the lamella and (ii) the incorporation of cholesterol into the lamella induces an increase in the orientation dynamics in the deep region of the phospholipid acyl chains with a corresponding decrease in the orientation at the region close to the polar lipid headgroups. The microscopy data from DOPC/DPPC/Chol GUVs using Laurdan generalized polarization (Laurdan GP) suggest that a high cholesterol content in the bilayer weakens the stability of the water hydrogen bond network and hence the stability of the liquid-ordered phase (Lo).
True and false memories in children and adults: A cognitive neuroscience perspective

The authors consider evidence concerning accuracy and distortion in children's recollections within the broader context of recent research on memory that has used the methods and conceptual framework of cognitive neuroscience. They focus on 3 phenomena—source amnesia, confabulation, and false recognition—that have been observed in young children and in adults who have sustained damage to the frontal lobes. Similarities and differences between the memory performance of young children and frontal lobe patients are noted, and evidence concerning frontal lobe maturation and cognitive development is examined. The literature provides suggestive but not conclusive support for the hypothesis that some aspects of memory development and cognitive development are associated with immature frontal functioning. The authors conclude by considering several cognitive and temperamental factors that may be related to suggestibility and memory distortion in young children.
Human brain activity during spontaneously reversing perception of ambiguous figures

Looking at ambiguous figures results in rivalry with spontaneous alternation between two percepts. Using event-related functional magnetic resonance imaging, we localized transient human brain activity changes during perceptual reversals. Activation occurred in ventral occipital and intraparietal higher-order visual areas, deactivation in primary visual cortex and the pulvinar. Thus, without any physical stimulus changes, salient perceptual flips briefly engage widely separated specialized cortical areas, but are also associated with intermittent activity breakdown in structures putatively maintaining perceptual stability. Together, the dynamics of integrative perceptual experience are reflected in rapid spatially differentiated activity modulation within a cooperative set of neural structures.
Learning with Semantic Wikis

The knowledge society requires life-long learning and flexible learning environments that allow learners to learn whenever they have time, whereever they are, and according to their own needs and background knowledge. In this article, we investigate how Semantic Wikis – a combination of Wiki and Semantic Web technology – can support learners in such flexible learning environments. We first summarise common features of Wikis and Semantic Wikis and then describe different aspects of Semantic Wikis for learning. We also introduce our Semantic Wiki system called IkeWiki and show why it is particularly promising as
Psychophysical and Neural Correlates of Auditory Attraction and Aversion

i ABSTRACT This study explores the psychophysical and neural processes associated with the perception of sounds as either pleasant or aversive. The underlying psychophysical theory is based on auditory scene analysis, the process through which listeners parse auditory signals into individual acoustic sources. The first experiment tests and confirms that a self-rated pleasantness continuum reliably exists for 20 various stimuli (r = .48). In addition, the pleasantness continuum correlated with the physical acoustic characteristics of consonance/dissonance (r = .78), which can facilitate auditory parsing processes. The second experiment uses an fMRI block design to test blood oxygen level dependent (BOLD) changes elicited by a subset of 5 exemplar stimuli chosen from Experiment 1 that are evenly distributed over the pleasantness continuum. Specifically, it tests and confirms that the pleasantness continuum produces systematic changes in brain activity for unpleasant acoustic stimuli beyond what occurs with pleasant auditory stimuli. Results revealed that the combination of two positively and two negatively valenced experimental sounds compared to one neutral baseline control elicited BOLD increases in the primary auditory cortex, specifically the bilateral superior temporal gyrus, and left dorsomedial prefrontal cortex; the latter being consistent with a frontal decision-making process common in identification tasks. The negatively-valenced stimuli yielded additional BOLD increases in the left insula, which typically indicates processing of visceral emotions. The positively-valenced stimuli did not yield any significant BOLD activation, consistent with consonant, harmonic stimuli being the prototypical acoustic pattern of auditory objects that is optimal for auditory scene analysis. Both the psychophysical findings of Experiment 1 and the neural processing findings of ii Experiment 2 support that consonance is an important dimension of sound that is processed in a manner that aids auditory parsing and functional representation of acoustic objects and was found to be a principal feature of pleasing auditory stimuli. iii ACKNOWLEDGMENTS Thanks to everyone who helped me while I was working on this study, be it professional,
ncreased error-related brain activity in generalized anxiety disorder

The error-related negativity (ERN) is a negative deflection approximately 50 ms following an erroneous response, and is thought to reflect activity of the anterior cingulate cortex (ACC), a region of the medial prefrontal cortex implicated in the pathophysiology of a number of affective disorders, including generalized anxiety disorder (GAD). Pathological worry, the hallmark of GAD, has been linked to increased
Delayed Maturity Associated with Southern Green Stink Bug (Heteroptera: Pentatomidae) Injury at Various Soybean Phenological Stages

Abstract Delayed maturity in soybean, Glycine max (L.) Merr. , occurred in response to infestation by southern green stink bug, Nezara viridula (L.), in 4 yr of field studies. Maturity delays followed stink bug infestation that occurred only during the pod set and filling stages (R3–R5.5), and infestations at R3–4 and R5 resulted in delayed maturity more consistently than did infestation at R5.5. Infestation levels of six stink bugs per 0.3 m of row for 7–14 d generally were required to delay soybean maturity. The greatest impact on seed yield and quality parameters followed stink bug infestations that occurred during R3–R5.5, which corresponded closely with the periods of infestation that resulted in delayed maturity. If both delayed maturity and yield reduction are considered, the pod elongation through late pod filling stages were most critical for protecting soybeans from southern green stink bugs.
EFFECTS OF POMEGRANATE JUICE ON HUMAN CYTOCHROME P450 3A (CYP3A) AND CARBAMAZEPINE PHARMACOKINETICS IN RATS

In this study, we investigated whether components of pomegranate could inhibit CYP3A-mediated drug metabolism. The ability of pomegranate to inhibit the carbamazepine 10,11-epoxidase activity of CYP3A was examined using human liver microsomes, and pomegranate juice was shown to be a potent inhibitor of human CYP3A. Addition of 25 μl (5.0% v/v) of pomegranate juice resulted in almost complete inhibition of the carbamazepine 10,11-epoxidase activity of human CYP3A (1.8%). The inhibition potency of pomegranate juice was similar to that of grapefruit juice. In addition, we investigated the in vivo interaction between pomegranate juice and carbamazepine pharmacokinetics using rats. In comparison with water, the area under the concentration-time curve (AUC) of carbamazepine was approximately 1.5-fold higher when pomegranate juice (2 ml) was orally injected 1 h before the oral administration of the carbamazepine (50 mg/kg). On the other hand, the elimination half-life of carbamazepine and the AUC ratio of carbamazepine 10,11-epoxide to carbamazepine were not altered by the injection of pomegranate juice. These data suggest that pomegranate juice component(s) impairs the function of enteric but not hepatic CYP3A. Thus, we discovered that a component(s) of pomegranate inhibits the human CYP3A-mediated metabolism of carbamazepine. Furthermore, pomegranate juice alters the carbamazepine pharmacokinetics in rats.
Phosphorylation of SPT5 by CDKD;2 Is Required for VIP5 Recruitment and Normal Flowering in Arabidopsis thaliana[OPEN]

Phosphorylation of transcription elongation factor SPT5 determines the trimethylated lysine 4 on histone 3 (H3K4me3) status in Arabidopsis. The elongation factor suppressor of Ty 5 homolog (Spt5) is a regulator of transcription and histone methylation. In humans, phosphorylation of SPT5 by P-TEFb, a protein kinase composed of Cyclin-dependent kinase 9 (CDK9) and cyclin T, interacts with the RNA polymerase II-associated factor1 (PAF1) complex. However, the mechanism of SPT5 phosphorylation is not well understood in plants. Here, we examine the function of SPT5 in Arabidopsis thaliana and find that spt5 mutant flowers early under long-day and short-day conditions. SPT5 interacts with the CDK-activating kinase 4 (CAK4; CDKD;2) and is specifically phosphorylated by CDKD;2 at threonines. The phosphorylated SPT5 binds VERNALIZATION INDEPENDENCE5 (VIP5), a subunit of the PAF1 complex. Genetic analysis showed that VIP5 acts downstream of SPT5 and CDKD;2. Loss of SPT5 or CDKD;2 function results in early flowering because of decreased amounts of FLOWERING LOCUS C (FLC) transcript. Importantly, CDKD;2 and SPT5 are required for the deposition of VIP5 and the enhancement of trimethylation of histone 3 lysine 4 in the chromatin of the FLC locus. Together, our results provide insight into the mechanism by which the Arabidopsis elongation factor SPT5 recruits the PAF1 complex via the posttranslational modification of proteins and suggest that the phosphorylation of SPT5 by CDKD;2 enables it to recruit VIP5 to regulate chromatin and transcription in Arabidopsis.
The effects of aging on visual contour and shape perception

The effects of aging on visual contour and shape perception Eugenie Roudaia Doctor of Philosophy Department of Psychology, Neuroscience, & Behaviour McMaster University 2013 Human vision has an incredible ability to translate light reaching the retinae into a coherent, three-dimensional representation of the outside world in a fraction of a second. Much research has been devoted to understanding how local orientation information is integrated to form global contours and shapes a crucial step in visual processing. This dissertation describes experiments examining how contour and shape perception are affected in healthy aging. Chapter 2 examined contour grouping at low contrast and in the absence of distracters. Unlike younger subjects, older subjects did not benefit from co-alignment of local orientations with the contours outline, suggesting that grouping by orientation co-alignment is impaired in older age in low contrast. Chapters 3 and 4 examined the effects of aging on the ability to detect and discriminate high-contrast contours embedded in a dense field of distracters, as real life situations often require detecting objects among clutter, such as a snake hiding among tall grass. Results showed that older adults require significantly more time to discriminate contours in clutter, especially for less salient contours. Moreover, increasing the relative density of background clutter had a greater detrimental effect on older, compared to younger, subjects. However, aging did not seem to affect the ability to group contours across a range of spatial distances, or the sensitivity of contour integration to orientation misalignment. Lastly, Chapter 5 examined the influence of local orientation information on the perception of a contour’s shape. Results revealed that older and younger subjects perceived the shape of a sampled contour in the same way, even when the contour’s orientation and position information were in conflict. These findings indicated that the integration of orientation and position information in shape perception does not change with age.
Advanced maritime adaptation in the western Pacific coastal region extends back to 35,000–30,000 years before present

Significance Moving into oceanic islands after c. 50,000 years ago was a remarkable step forward in the history of worldwide expansion of modern humans. However, the developmental process of Pleistocene maritime technology remains unclear. So far, the only secure sources of information for such discussions were the Indonesian Archipelago and northern New Guinea as steppingstones from the Asian continent to Australia. This article reports a successful maritime adaptation that extended from ∼35,000 to 13,000 years ago on a small island environment in the southern Japanese Archipelago. The new evidence demonstrates a geographically wider distribution of early maritime technology that extended north to the midlatitude areas along the western Pacific coast. Maritime adaptation was one of the essential factors that enabled modern humans to disperse all over the world. However, geographic distribution of early maritime technology during the Late Pleistocene remains unclear. At this time, the Indonesian Archipelago and eastern New Guinea stand as the sole, well-recognized area for secure Pleistocene evidence of repeated ocean crossings and advanced fishing technology. The incomplete archeological records also make it difficult to know whether modern humans could sustain their life on a resource-poor, small oceanic island for extended periods with Paleolithic technology. We here report evidence from a limestone cave site on Okinawa Island, Japan, of successive occupation that extends back to 35,000−30,000 y ago. Well-stratified strata at the Sakitari Cave site yielded a rich assemblage of seashell artifacts, including formally shaped tools, beads, and the world’s oldest fishhooks. These are accompanied by seasonally exploited food residue. The persistent occupation on this relatively small, geographically isolated island, as well as the appearance of Paleolithic sites on nearby islands by 30,000 y ago, suggest wider distribution of successful maritime adaptations than previously recognized, spanning the lower to midlatitude areas in the western Pacific coastal region.
Trends in prostate cancer incidence and mortality in New Mexico are consistent with an increase in effective screening.

The increasing occurrence of prostate cancer in the United States has led to recommendations for routine prostate cancer screening in men aged 50 years and older. Although present methods of prostate cancer screening have not been shown to reduce mortality, screening using digital rectal examination or prostate-specific antigen does detect tumors at earlier stages. To assess whether trends in incidence and mortality rates are consistent with an increase in effective screening in New Mexico, we examined prostate cancer incidence rates calculated from data collected by the New Mexico Tumor Registry for the years 1969-1991, and mortality rates calculated from data collected by the New Mexico Bureau of Vital Statistics for the years 1958-1991. Population-based measures of prostate cancer screening frequency in New Mexico are not available for the period of this study; however, the proportion of prostate cancers detected by screening, as documented by a review of records from a random sample of prostate cancer cases, increased 3-fold, from 13% during the 1969-1972 period to 41% in the 1988-1991 period. During the period of study, age-adjusted incidence rates increased from 66.3 to 122.3/100,000 men. Stage migration from distant to earlier stages was apparent in the increase in the proportion of early stage cancers from 77.5 to 85.5%, and the decrease of distant stage cancers from 21.2 to 9.8%. Stage-specific incidence rates increased for local (87.3%) and regional stage cancers (283.0%), and decreased for distant stage cancers (16.0%). (ABSTRACT TRUNCATED AT 250 WORDS)
Mental health of British farmers

Aims: To estimate the prevalence of neurotic symptoms in a sample of British farmers, to investigate whether farming characteristics are associated with psychiatric morbidity, and to test the hypothesis that British farmers have a higher prevalence of depression and thoughts of life not worth living than the British household population. Methods: A total of 425 farmers from Hereford, Norwich, and Preston completed the Revised Clinical Interview Schedule (CIS-R) by computer between March and July 1999. The comparison cohort consisted of 9830 private householders aged 16–64 from the Office of Population Censuses and Surveys National Psychiatric Morbidity Surveys of Great Britain carried out in 1993 in which the CIS-R was administered. All analyses used the commands developed specifically for survey data available in Stata version 6.0. Results: Taking a threshold of an overall score of 12 or more on the CIS-R, only 6% of farmers reported clinically relevant psychiatric morbidity. Psychiatric morbidity was not significantly associated with farm type or size in this study. Farmers reported a lower prevalence of psychiatric morbidity than the general population but were more likely to report thinking that life is not worth living, particularly after the low prevalence of psychiatric morbidity had been taken into account (odds ratio 2.56, 95% CI 1.39 to 4.69). When restricting the comparison to only rural or semirural householders, this increased risk was even more pronounced (odds ratio 3.26, 95% CI 1.51 to 7.02). Conclusions: The relation between depression and suicidal ideation seems to be quite different among farmers and the general population and warrants further investigation. We have shown it is possible to measure mental health systematically in a sample of British farmers. This study should be repeated in the aftermath of the foot and mouth crisis.