Miracle-dz/UniFAR-FTUs huggingface dataset:
What Is the Goal of Sensory Coding?

A number of recent attempts have been made to describe early sensory coding in terms of a general information processing strategy. In this paper, two strategies are contrasted. Both strategies take advantage of the redundancy in the environment to produce more effective representations. The first is described as a compact coding scheme. A compact code performs a transform that allows the input to be represented with a reduced number of vectors (cells) with minimal RMS error. This approach has recently become popular in the neural network literature and is related to a process called Principal Components Analysis (PCA). A number of recent papers have suggested that the optimal compact code for representing natural scenes will have units with receptive field profiles much like those found in the retina and primary visual cortex. However, in this paper, it is proposed that compact coding schemes are insufficient to account for the receptive field properties of cells in the mammalian visual pathway. In contrast, it is proposed that the visual system is near to optimal in representing natural scenes only if optimality is defined in terms of sparse distributed coding. In a sparse distributed code, all cells in the code have an equal response probability across the class of images but have a low response probability for any single image. In such a code, the dimensionality is not reduced. Rather, the redundancy of the input is transformed into the redundancy of the firing pattern of cells. It is proposed that the signature for a sparse code is found in the fourth moment of the response distribution (i.e., the kurtosis). In measurements with 55 calibrated natural scenes, the kurtosis was found to peak when the bandwidths of the visual code matched those of cells in the mammalian visual cortex. Codes resembling wavelet transforms are proposed to be effective because the response histograms of such codes are sparse (i.e., show high kurtosis) when presented with natural scenes. It is proposed that the structure of the image that allows sparse coding is found in the phase spectrum of the image. It is suggested that natural scenes, to a first approximation, can be considered as a sum of self-similar local functions (the inverse of a wavelet). Possible reasons for why sensory systems would evolve toward sparse coding are presented.
Experimental Investigation on Usage of Palm Oil as a Lubricant to Substitute Mineral Oil in CI Engines

Due to growing environmental concerns, vegetable oils are finding their way into lubricants for industrial and transportation applications. The substitution of mineral oil with vegetable oil as a base stock for an environment friendly lubricant in a CI engine is explored in this study without adding any additives. The experiments have been conducted with a mixture of palm oil and mineral oil, at different compositions. Blends of palm oil and mineral oil in different compositions, 0, 25, and 50 (by vol %) were added to base SAE20W40 mineral oil to obtain different lubricant blends. The parameters evaluated include brake thermal efficiency, brake specific fuel consumption, volumetric efficiency, and mechanical efficiency and exhaust emissions. The engine performance and emission tests were carried out on a single cylinder, water cooled, 4-stroke CI engine. Compared to mineral oil, the palm oil-based lubricant revealed appreciable expedience on engine and emission performance.
International Journal of Copd Dovepress Fractal Correlation Property of Heart Rate Variability in Chronic Obstructive Pulmonary Disease

Background: It was reported that autonomic nervous system function is altered in subjects with chronic obstructive pulmonary disease (COPD). We evaluated short-and long-term fractal exponents of heart rate variability (HRV) in COPD subjects. Patients and methods: We analyzed data from 30 volunteers, who were divided into two groups according to spirometric values: COPD (n = 15) and control (n = 15). For analysis of HRV indices, HRV was recorded beat by beat with the volunteers in the supine position for 30 minutes. We analyzed the linear indices in the time (SDNN [standard deviation of normal to normal] and RMSSD [root-mean square of differences]) and frequency domains (low frequency [LF], high frequency [HF], and LF/HF), and the short-and long-term fractal exponents were obtained by detrended fluctuation analysis. We considered P , 0.05 to be a significant difference. Results: COPD patients presented reduced levels of all linear exponents and decreased short-term fractal exponent (alpha-1: 0.899 ± 0.18 versus 1.025 ± 0.09, P = 0.026). There was no significant difference between COPD and control groups in alpha-2 and alpha-1/alpha-2 ratio. Conclusion: COPD subjects present reduced short-term fractal correlation properties of HRV, which indicates that this index can be used for risk stratification, assessment of systemic disease manifestations, and therapeutic procedures to monitor those patients.
Ensemble Forecasting in a System with Model Error

Abstract Error in weather forecasting is due to inaccuracy both in the models used and in the estimate of the current atmospheric state at which the model is initiated. Because weather models are thought to be chaotic and, therefore, sensitive to initial conditions, the technique of ensemble forecasting has been developed in part to address the latter effect. An ensemble of forecasts is made with perturbed initial conditions, with the aim being to produce an estimate of the probability distribution function for the future state of the weather. Some ensemble schemes also include changes to the model. While the ensemble approach is quite widely adopted, however, its verification is complicated, and the effect of model error on ensemble performance is not clear. In this paper, the effect of model error on ensemble behavior for a version of the Lorenz ’96 system is investigated. It is shown that estimates of the model’s ability to shadow the observations, obtained using the model drift, are robust to observat.
Products deriving from microbial fermentation are linked to insulinaemic response in pigs fed breads prepared from whole-wheat grain and wheat and rye ingredients

The effects of wheat and rye breads made from whole-wheat grain (WWG), wheat aleurone flour (WAF) or rye aleurone flour (RAF) on net portal absorption of carbohydrate-derived nutrients (glucose, SCFA and lactate) and apparent insulin secretion were studied in a model experiment with catheterised pigs. The breads were similar in dietary fibre (DF, 120–125 g/kg DM) but differed in arabinoxylans (50–62 g/kg), β-glucans (4–9 g/kg) and content of soluble DF (13–29 g/kg). Six pigs in a repeated 3 × 3 crossover design were fitted with catheters in the portal vein and the mesenteric artery and a portal flow probe. Pigs were fed three meals daily (at 09.00, 14.00 and 19.00 hours), and blood profiles were collected repeatedly from 08.30 until 19.00 hours once weekly. Net portal absorption of glucose was similar among breads and between meals. In contrast, insulin secretion was lowest (P < 0·05) in pigs fed RAF bread (3·9 nmol/h), intermediate in pigs fed WAF bread (5·4 nmol/h) and highest in pigs fed WWG bread (5·9 nmol/h), indicating that RAF bread improved insulin economy. Portal concentrations of propionate, butyrate and valerate were high, intermediate and low (P < 0·05) when pigs were fed RAF, WAF and WWG breads, respectively. Insulin secretion was higher (P < 0·001), and portal absorption of SCFA was lower (P < 0·05) after the first daily meal than after the second daily meal (8·8 v. 4·4 nmol/h). A low insulin response was associated with high portal absorption of SCFA. In conclusion, RAF bread was able to improve insulin economy compared to WWG bread.
Edinburgh Research Explorer RNA-seq Analysis of Host and Viral Gene Expression Highlights Interaction between Varicella Zoster Virus and Keratinocyte Differentiation

Varicella zoster virus (VZV) is the etiological agent of chickenpox and shingles, diseases characterized by epidermal skin blistering. Using a calcium-induced keratinocyte differentiation model we investigated the interaction between epidermal differentiation and VZV infection. RNA-seq analysis showed that VZV infection has a profound effect on differentiating keratinocytes, altering the normal process of epidermal gene expression to generate a signature that resembles patterns of gene expression seen in both heritable and acquired skin-blistering disorders. Further investigation by real-time PCR, protein analysis and electron microscopy revealed that VZV specifically reduced expression of specific suprabasal cytokeratins and desmosomal proteins, leading to disruption of epidermal structure and function. These changes were accompanied by an upregulation of kallikreins and serine proteases. Taken together VZV infection promotes blistering and desquamation of the epidermis, both of which are necessary to the viral spread and pathogenesis. At the same time, analysis of the viral transcriptome provided evidence that VZV gene expression was significantly increased following calcium treatment of keratinocytes. Using reporter viruses and immunohistochemistry we confirmed that VZV gene and protein expression in skin is linked with cellular differentiation. These studies highlight the intimate host-pathogen interaction following VZV infection of skin and provide insight into the mechanisms by which VZV remodels the epidermal environment to promote its own replication and spread. Analysis
Rates and Predictors of Consistent Condom-use by People Living with HIV/AIDS on Antiretroviral Treatment in Uganda

Antiretroviral treatment (ART) has been recognized as one of the methods for reducing the risk of HIV transmission, and access to this is being rapidly expanded. However, in a generalized HIV epidemic, ART could increase unprotected sex by people living with HIV/AIDS (PHAs). This paper assessed the rates and predictors of consistent condom-use by sexually-active PHAs after initiating ART. The study used cross-sectional data on sexual behaviour of 269 sexually-active ART-experienced individuals (95 males and 174 females) aged 18 years and above. The results revealed that 65% (70% of men and 61% of women) used condom consistently after initiating ART. Consistent use of condom was more likely if PHAs had secondary or tertiary-level education and had more than one sex partner in the 12 months preceding the study. However, PHAs were less likely to have used condom consistently if they worked in the informal and formal sectors, belonged to the medium and high-income groups, and were married. PHAs, who were on ART for less than 1 year and 1-2 year(s), had a good self-perception of health, had a sexual partner who was HIV-negative or a partner with unknown HIV status, and desired to bear children, were also less likely to have used condom consistently. The paper concluded that, although the majority of PHAs consistently used condom, there was potential for unprotected sex by PHAs on ART.
N-Variant Systems: A Secretless Framework for Security through Diversity

We present an architectural framework for systematically using automated diversity to provide high assurance detection and disruption for large classes of attacks. The framework executes a set of automatically diversified variants on the same inputs, and monitors their behavior to detect divergences. The benefit of this approach is that it requires an attacker to simultaneously compromise all system variants with the same input. By constructing variants with disjoint exploitation sets, we can make it impossible to carry out large classes of important attacks. In contrast to previous approaches that use automated diversity for security, our approach does not rely on keeping any secrets. In this paper, we introduce the N-variant systems framework, present a model for analyzing security properties of N-variant systems, define variations that can be used to detect attacks that involve referencing absolute memory addresses and executing injected code, and describe and present performance results from a prototype implementation.
Sex Determination Using the Second Cervical Vertebra—A Test of the Method *

Abstract: Sex is one of the critical questions addressed when unidentified skeletal remains are discovered in forensic or archeological contexts. Continuous testing and re‐evaluation of existing techniques is essential to improve accuracy and precision. The Wescott (J Forensic Sci 2000;45(2):462–6) method of sex determination from dimensions of the second cervical vertebra was blind‐tested on 153 adult individuals from the Spitalfields documented collection of human skeletal remains held at the Natural History Museum, London. Significant sex differences were determined for all dimensions measured (independent two‐sample t‐test, p < 0.05–0.001). The discriminant functions developed by Wescott were shown to have an overall accuracy of classification of 76.99%. Using stepwise discriminant analysis, a discriminant function based on the Spitalfields data correctly classified sex in 83.3% of individuals and was able to classify males and females with equal accuracy. Additional discriminant functions are presented for use in instances where preservation of the second cervical vertebra is poor.
ALLELIC VARIABILITY OF CROATIAN WHEAT CULTIVARS AT THE MICROSATELLITE LOCUS XGWM261

The plant height of wheat is an important quantitative trait, controlled by several genes with strong effect. However, in worldwide wheat breeding only several of those genes have been used. Rht8 (Reduced Height Gene) is especially important in agro-climatic conditions of South-East Europe. Because of its close linkage with dwarfing gene Rht8, microsatellite marker gwm261 has been accepted as the diagnostic molecular marker for gene Rht8. In this study, allelic variability at the locus Xgwm261 for 122 Croatian and foreign wheat cultivars by means of microsatellite marker gwm261 was determined. A 192 base pairs allele at the locus Xgwm261 was found for 84 Croatian cultivars. The genetic heritage of Croatian cultivars at the locus Xgwm261 is the consequence of usage of new parental components, carriers of short plant and early maturity attributes and the consequent selection of progeny with these traits during breeding process. The results of this research will be helpful in characterization of domestic wheat cultivars, as well as in more accurate selection of parents for hybridization purposes.
Inhibition of G Protein-Activated Inwardly Rectifying K+ Channels by Different Classes of Antidepressants

Various antidepressants are commonly used for the treatment of depression and several other neuropsychiatric disorders. In addition to their primary effects on serotonergic or noradrenergic neurotransmitter systems, antidepressants have been shown to interact with several receptors and ion channels. However, the molecular mechanisms that underlie the effects of antidepressants have not yet been sufficiently clarified. G protein-activated inwardly rectifying K+ (GIRK, Kir3) channels play an important role in regulating neuronal excitability and heart rate, and GIRK channel modulation has been suggested to have therapeutic potential for several neuropsychiatric disorders and cardiac arrhythmias. In the present study, we investigated the effects of various classes of antidepressants on GIRK channels using the Xenopus oocyte expression assay. In oocytes injected with mRNA for GIRK1/GIRK2 or GIRK1/GIRK4 subunits, extracellular application of sertraline, duloxetine, and amoxapine effectively reduced GIRK currents, whereas nefazodone, venlafaxine, mianserin, and mirtazapine weakly inhibited GIRK currents even at toxic levels. The inhibitory effects were concentration-dependent, with various degrees of potency and effectiveness. Furthermore, the effects of sertraline were voltage-independent and time-independent during each voltage pulse, whereas the effects of duloxetine were voltage-dependent with weaker inhibition with negative membrane potentials and time-dependent with a gradual decrease in each voltage pulse. However, Kir2.1 channels were insensitive to all of the drugs. Moreover, the GIRK currents induced by ethanol were inhibited by sertraline but not by intracellularly applied sertraline. The present results suggest that GIRK channel inhibition may reveal a novel characteristic of the commonly used antidepressants, particularly sertraline, and contributes to some of the therapeutic effects and adverse effects.
Packet prediction for speculative cut-through switching

The amount of intelligent packet processing in an Ethernet switch continues to grow, in order to support of embedded applications such as network security, load balancing and quality of service assurance. This increased packet processing is contributing to greater per-packet latency through the switch. In addition, there is a growing interest in using Ethernet switches in low latency environments such as high-performance clusters, storage area networks and real-time media distribution. In this paper we propose Packet Prediction for Speculative Cut-through Switching (PPSCS), a novel approach to reducing the latency of modern Ethernet switches without sacrificing feature rich policy-based forwarding enabled by deep packet inspection. PPSCS exploits the temporal nature of network communications to predict the flow classification of incoming packets and begin the speculative forwarding of packets before complex lookup operations are complete. Simulation studies using actual network traces indicate that correct prediction rates of up to 97% are achievable using only a small amount of prediction circuitry per port. These studies also indicate that PPSCS can reduce the latency in traditional store-and-forward switches by nearly a factor of 8, and reduce the latency of cut-through switches by a factor of 3.
Cognitive Hearing Science

Stuart Gatehouse was one of the pioneers of cognitive hearing science. The ease of language understanding (ELU) model (Rönnberg) is one example of a cognitive hearing science model where the interplay between memory systems and signal processing is emphasized. The mismatch notion is central to ELU and concerns how phonological information derived from the signal, matches/mismatches phonological representations in lexical and semantic long-term memory (LTM). When signals match, processing is rapid, automatic and implicit, and lexical activation proceeds smoothly. Given a mismatch, lexical activation fails, and working or short-term memory (WM/STM) is assumed to be invoked to engage in explicit repair strategies to disambiguate what was said in the conversation. In a recent study, negative long-term consequences of mismatch were found by means of relating hearing loss to episodic LTM in a sample of old hearing-aid wearers. STM was intact (Rönnberg et al.). Beneficial short-term consequences of a binary masking noise reduction scheme on STM was obtained in 4-talker babble for individuals with high WM capacity, but not in stationary noise backgrounds (Ng et al.). This suggests that individuals high on WM capacity inhibit semantic auditory distraction in 4-talker babble while exploiting the phonological benefits in terms of speech quality provided by binary masking (Wang). Both long-term and short-term mismatch effects, apparent in data sets including behavioral as well as subjective (Rudner et al.) data, need to be taken into account in the design of future hearing instruments.
On the errors involved in ice-thickness estimates I: ground-penetrating radar measurement errors

ABSTRACT This is the first (Paper I) of three companion papers focused respectively, on the estimates of the errors in ice thickness retrieved from pulsed ground-penetrating radar (GPR) data, on how to estimate the errors at the grid points of an ice-thickness DEM, and on how the latter errors, plus the boundary delineation errors, affect the ice-volume estimates. We here present a comprehensive analysis of the various errors involved in the computation of ice thickness from pulsed GPR data, assuming they have been properly migrated. We split the ice-thickness error into independent components that can be estimated separately. We consider, among others, the effects of the errors in radio-wave velocity and timing. A novel aspect is the estimate of the error in thickness due to the uncertainty in horizontal positioning of the GPR measurements, based on the local thickness gradient. Another novel contribution is the estimate of the horizontal positioning error of the GPR measurements due to the velocity of the GPR system while profiling, and the periods of GPS refreshing and GPR triggering. Their effects are particularly important for airborne profiling. We illustrate our methodology through a case study of Werenskioldbreen, Svalbard.
Dual specific oral tolerance induction using interferon gamma for IgE-mediated anaphylactic food allergy and the dissociation of local skin allergy and systemic oral allergy: tolerance or desensitization?

BACKGROUND Specific oral tolerance induction (SOTI) for IgE-mediated food allergy (IFA) can be successfully achieved using interfero gamma (classic SOTI). OBJECTIVE In this study, a tolerable dose was introduced during tolerance induction with interferon gamma (dual SOTI), and its effectiveness was evaluated. METHODS The study population comprised 25 IFA patients. Blood samples were taken for analysis, including complete blood count with differential counts of eosinophils, serum total IgE levels, and specific IgE for allergenic foods. Skin prick tests were conducted with the allergens. Oral food challenges were performed to diagnose IFA. Ten patients received dual SOTI, 5 received classic SOTI, 5 received SOTI without interferon gamma (original SOTI), and 5 were not treated (controls). RESULTS Patients treated with dual SOTI and classic SOTI using interferon gamma became tolerant to the allergenic food. The tolerable dose was introduced successfully in dual SOTI. It was difficult to proceed with the same dosing protocol used for classic SOTI in cases treated with original SOTI. Following dual SOTI, the systemic reaction to oral intake subsided, but the local skin reaction to contact with the allergenic food persisted. CONCLUSIONS Dual SOTI is an improved protocol for SOTI using interferon gamma for IFA.The local skin reaction and systemic reaction to oral intake were dissociated following dual SOTI. In cases of food allergy, tolerance appears to result from desensitization to allergens.
Optimal Exciting Dance for Identifying Inertial Parameters of an Anthropomorphic Structure

Knowledge of the mass and inertial parameters of a humanoid robot or a human being is crucial for the development of model-based control, as well as for monitoring the rehabilitation process. These parameters are also important for obtaining realistic simulations in the field of motion planning and human motor control. For robots, they are often provided by computer-aided design data, while averaged anthropometric table values are often used for human subjects. The unit/subject-specific inertial parameters can be identified by using the external wrench caused by the ground reaction. However, the identification accuracy intrinsically depends on the excitation properties of the recorded motion. In this paper, a new method for obtaining optimal excitation motions is proposed. This method is based on the identification model of legged systems and on optimization processes to generate excitation motions while handling mechanical constraints. A pragmatic decomposition of this problem, the use of a new excitation criterion, and a quadratic program to identify inertial parameters are proposed. The method has been experimentally validated onto an HOAP-3 humanoid robot and with one human subject.