Miracle-dz/UniFAR-FTUs huggingface dataset:
Targeted Curing of All Lysogenic Bacteriophage from Streptococcus pyogenes Using a Novel Counter-selection Technique

Streptococcus pyogenes is a human commensal and a bacterial pathogen responsible for a wide variety of human diseases differing in symptoms, severity, and tissue tropism. The completed genome sequences of >37 strains of S. pyogenes, representing diverse disease-causing serotypes, have been published. The greatest genetic variation among these strains is attributed to numerous integrated prophage and prophage-like elements, encoding several virulence factors. A comparison of isogenic strains, differing in prophage content, would reveal the effects of these elements on streptococcal pathogenesis. However, curing strains of prophage is often difficult and sometimes unattainable. We have applied a novel counter-selection approach to identify rare S. pyogenes mutants spontaneously cured of select prophage. To accomplish this, we first inserted a two-gene cassette containing a gene for kanamycin resistance (KanR) and the rpsL wild-type gene, responsible for dominant streptomycin sensitivity (SmS), into a targeted prophage on the chromosome of a streptomycin resistant (SmR) mutant of S. pyogenes strain SF370. We then applied antibiotic counter-selection for the re-establishment of the KanS/SmR phenotype to select for isolates cured of targeted prophage. This methodology allowed for the precise selection of spontaneous phage loss and restoration of the natural phage attB attachment sites for all four prophage-like elements in this S. pyogenes chromosome. Overall, 15 mutants were constructed that encompassed every permutation of phage knockout as well as a mutant strain, named CEM1ΔΦ, completely cured of all bacteriophage elements (a ~10% loss of the genome); the only reported S. pyogenes strain free of prophage-like elements. We compared CEM1ΔΦ to the WT strain by analyzing differences in secreted DNase activity, as well as lytic and lysogenic potential. These mutant strains should allow for the direct examination of bacteriophage relationships within S. pyogenes and further elucidate how the presence of prophage may affect overall streptococcal survival, pathogenicity, and evolution.
5-hydroxytryptamine1B receptors block the GABAB synaptic potential in rat dopamine neurons

Intracellular recordings were made from presumed dopamine-containing neurons in slices cut from the midbrain of the rat. Focal electrical stimulation produced a hyperpolarizing synaptic potential that was reduced by 75–95% by the GABAB-receptor antagonist 2-hydroxysaclofen (300 microM). 5-HT (3–100 microM) reduced the amplitude of the GABAB synaptic potential by 20–74%, with a 50% reduction at 10 microM, but did not reduce the amplitude of synaptic potentials mediated by GABAA receptors. 5-HT acted presynaptically because hyperpolarizations produced by exogenously administered GABA (1 mM) in picrotoxin (100 microM) were not affected by 5-HT (30 microM). (+/-)-Cyanopindolol (100 nM), a 5-HT1B antagonist, blocked the effect of 5-HT (10 microM); spiperone (1 microM), which is an antagonist at 5-HT1A and 5-HT2 receptors, had no effect. The amplitude of the GABAB synaptic potential was reduced by the 5-HT1B receptor agonists 1-[3-(trifluoromethyl)- phenyl]-piperazine (300 nM) and 7-trifluoromethyl-4-(4-methyl-1- piperazinyl)-pyrrolo[1,2-a]quinoxaline (1 microM), but not by the 5- HT1A agonist N,N-dipropyl-5-carboxamidotryptamine (1 microM) or the 5- HT2 agonist (+/-)-1-(2,5-dimethoxy-4-iodophenyl)-2-amino-propane (10 microM). We conclude that 5-HT activates presynaptic 5-HT1B receptors that inhibit the release of GABA onto GABAB but not GABAA receptors.
Transcriptional Regulation of PES1 Expression by c-Jun in Colon Cancer

Pescadillo is a nucleolar protein that has been suggested to be involved in embryonic development and ribosome biogenesis. Deregulated expression of human pescadillo (PES1) was described in some tumors, but its precise roles in tumorigenesis remains unclear. In this study, we generated three monoclonal antibodies recognizing PES1 with high specificity and sensitivity, with which PES1 expression in human colon cancer was analyzed immunohistochemically. Out of 265 colon cancer tissues, 89 (33.6%) showed positive PES1 expression, which was significantly higher than in non-cancerous tissues (P<0.001). Silencing of PES1 in colon cancer cells resulted in decreased proliferation, reduced growth of xenografts, and cell cycle arrest in G1 phase, indicating PES1 functions as an oncogene. We then explored the mechanism by which PES1 expression is controlled in human colon cancers and demonstrated that c-Jun, but not JunB, JunD, c-Fos, or mutant c-Jun, positively regulated PES1 promoter transcription activity. In addition, we mapped −274/−264 region of PES1 promoter as the c-Jun binding sequence, which was validated by chromatin immunoprecipitation and electrophoretic mobility shift assays. Moreover, we demonstrated a positive correlation between c-Jun and PES1 expression in colon cancer cells and colon cancer tissues. Upstream of c-Jun, it was revealed that c-Jun NH2-terminal kinases (JNK) is essential for controlling PES1 expression. Our study, in the first place, uncovers the oncogenic role of PES1 in colon cancer and elucidates the molecular mechanism directing PES1 expression.
Uterine compression sutures for postpartum hemorrhage: is routine postoperative cavity evaluation needed?

Postpartum hemorrhage due to uterine atony continues to be one of the major causes of maternal morbidity and mortality. Several uterine compression suture techniques have been described and are increasingly being used worldwide as a conservative approach. However, little is known about the long‐term effects on the uterine cavity, as well as fertility and pregnancy outcomes. We reviewed the reported complications and uterine findings after the use of compression sutures, both in examinations to evaluate the cavity (hysteroscopy, hysterosalpingography or sonohysterography) and at cesarean section, in order to assess the possible usefulness of routine postoperative cavity evaluation. Overall, the use of uterine compression sutures is effective and safe; however, some severe and potentially life‐threatening complications have been reported and could possibly have been prevented if uterine cavity evaluation had been performed. Routine follow‐up, both by hysteroscopy and an imaging technique, seems worthwhile.
Effect of Flexural and Torsional Wing Flexibility on Lift Generation in Hoverfly Flight

Synopsis The effect of wing flexibility in hoverflies was investigated using an at-scale mechanical model. Unlike dynamically scaled models, an at-scale model can include all phenomena related to motion and deformation of the wing during flapping. For this purpose, an at-scale polymer wing mimicking a hoverfly was fabricated using a custom micromolding process. The wing has venation and corrugation profiles which mimic those of a hoverfly wing and the measured flexural stiffness of the artificial wing is comparable to that of the natural wing. To emulate the torsional flexibility at the wing-body joint, a discrete flexure hinge was created. A range of flexure stiffnesses was chosen to match the torsional stiffness of pronation and supination in a hoverfly wing. The polymer wing was compared with a rigid, flat, carbon-fiber wing using a flapping mechanism driven by a piezoelectric actuator. Both wings exhibited passive rotation around the wing hinge; however, these rotations were reduced in the case of the compliant polymer wing due to chordwise deformations during flapping which caused a reduced effective angle of attack. Maximum lift was achieved when the stiffness of the hinge was similar to that of a hoverfly in both wing cases and the magnitude of measured lift is sufficient for hovering; the maximum lift achieved by the single polymer and carbon-fiber wings was 5.9 Â 10 2 mN and 6.9 Â 10 2 mN, respectively. These results suggest that hoverflies could exploit intrinsic compliances to generate desired motions of the wing and that, for the same flapping motions, a rigid wing could be more suitable for producing large lift.
Effects of Black Sugar ® and Mineral ® Supplementation on Growth performance and Meat Quality of Hamwoo Steers in Fattening Period

ABSTRACT This study was carried out investigate the effects of dietary addition of mineral and sugar on the dry matter intake, daily gain, yield grade and quality grade of Hanwoo ( Bos taurus coreanae ) steers. Three diets fed to steers included a control diet (concentrate mix and rice straw : C) and two treatments diet (control diet + black sugar 100 g + mineral 100 g : T1, and control diet + black sugar 150 g + mineral 50 g : T2). The results are summarized as follows; total feeding intake, body weight gain and daily gain did not show significant differences among the three treatments. Cold carcass weight was significantly (p T1 (4.67) > C (3.67). Meat color, fat color, texture and maturity were no significant difference. Quality grade was higher in T2 than in the other two treatments (C and T1), but there was no significant difference. The results show that marbling score and quality grade of Hanwoo can be increased by high dry matter intake with feeding addition of mineral and sugar. (
Understanding the multiframe caricature advantage for recognizing facial composites

Eyewitnesses often construct a “composite” face of a person they saw commit a crime, a picture that police use to identify suspects. We described a technique (Frowd, Bruce, Ross, McIntyre, & Hancock, 2007) based on facial caricature to facilitate recognition of these images: Correct naming substantially improves when composites are seen with progressive positive caricature, where distinctive information is enhanced, and then with progressive negative caricature, the opposite. Over the course of four experiments, the underpinnings of this mechanism were explored. Positive-caricature levels were found to be largely responsible for improving naming of composites, with some benefit from negative-caricature levels. Also, different frame-presentation orders (forward, reverse, random, repeated) facilitated equivalent naming benefit relative to static composites. Overall, the data indicate that composites are usually constructed as negative caricatures.
Domain Adaptation with Multiple Sources

This paper presents a theoretical analysis of the problem of domain adaptation with multiple sources. For each source domain, the distribution over the input points as well as a hypothesis with error at most ∊ are given. The problem consists of combining these hypotheses to derive a hypothesis with small error with respect to the target domain. We present several theoretical results relating to this problem. In particular, we prove that standard convex combinations of the source hypotheses may in fact perform very poorly and that, instead, combinations weighted by the source distributions benefit from favorable theoretical guarantees. Our main result shows that, remarkably, for any fixed target function, there exists a distribution weighted combining rule that has a loss of at most ∊ with respect to any target mixture of the source distributions. We further generalize the setting from a single target function to multiple consistent target functions and show the existence of a combining rule with error at most 3∊. Finally, we report empirical results for a multiple source adaptation problem with a real-world dataset.
A novel control method for multiphase voltage regulators

This paper proposes a novel control method for the multiphase voltage regulators (VRs) to power the next generation of microprocessors. With a simple structure, this control can achieve multiphase current sharing, very fast transient response, and adaptive output voltage regulation. Simulation and experimental results show that the proposed control scheme significantly improves the performance, as compared with existing control methods.
Distributionally Robust Optimization and Its Tractable Approximations

In this paper we focus on a linear optimization problem with uncertainties, having expectations in the objective and in the set of constraints. We present a modular framework to obtain an approximate solution to the problem that is distributionally robust and more flexible than the standard technique of using linear rules. Our framework begins by first affinely extending the set of primitive uncertainties to generate new linear decision rules of larger dimensions and is therefore more flexible. Next, we develop new piecewise-linear decision rules that allow a more flexible reformulation of the original problem. The reformulated problem will generally contain terms with expectations on the positive parts of the recourse variables. Finally, we convert the uncertain linear program into a deterministic convex program by constructing distributionally robust bounds on these expectations. These bounds are constructed by first using different pieces of information on the distribution of the underlying uncertainties to develop separate bounds and next integrating them into a combined bound that is better than each of the individual bounds.
Characteristics and Outcome of Streptococcus pneumoniae Endocarditis in the XXI Century

AbstractStreptococcus pneumoniae is an infrequent cause of severe infectious endocarditis (IE). The aim of our study was to describe the epidemiology, clinical and microbiological characteristics, and outcome of a series of cases of S. pneumoniae IE diagnosed in Spain and in a series of cases published since 2000 in the medical literature.We prospectively collected all cases of IE diagnosed in a multicenter cohort of patients from 27 Spanish hospitals (n = 2539). We also performed a systematic review of the literature since 2000 and retrieved all cases with complete clinical data using a pre-established protocol. Predictors of mortality were identified using a logistic regression model.We collected 111 cases of pneumococcal IE: 24 patients from the Spanish cohort and 87 cases from the literature review. Median age was 51 years, and 23 patients (20.7%) were under 15 years. Men accounted for 64% of patients, and infection was community-acquired in 96.4% of cases. The most important underlying conditions were liver disease (27.9%) and immunosuppression (10.8%). A predisposing heart condition was present in only 18 patients (16.2%). Pneumococcal IE affected a native valve in 93.7% of patients. Left-sided endocarditis predominated (aortic valve 53.2% and mitral valve 40.5%). The microbiological diagnosis was obtained from blood cultures in 84.7% of cases. In the Spanish cohort, nonsusceptibility to penicillin was detected in 4.2%. The most common clinical manifestations included fever (71.2%), a new heart murmur (55%), pneumonia (45.9%), meningitis (40.5%), and Austrian syndrome (26.1%). Cardiac surgery was performed in 47.7% of patients. The in-hospital mortality rate was 20.7%. The multivariate analysis revealed the independent risk factors for mortality to be meningitis (OR, 4.3; 95% CI, 1.4–12.9; P < 0.01). Valve surgery was protective (OR, 0.1; 95% CI, 0.04–0.4; P < 0.01). Streptococcus pneumoniae IE is a community-acquired disease that mainly affects native aortic valves. Half of the cases in the present study had concomitant pneumonia, and a considerable number developed meningitis. Mortality was high, mainly in patients with central nervous system (CNS) involvement. Surgery was protective.
Effects of a sheet metal stamping lubricant on static strength of adhesive-bonded aluminum alloys

Stamping lubricant is often applied to sheet metal surface to improve the formability. In this study, the effect of stamping lubricant on the strength of adhesive-bonded 1.0-mm-thick bare aluminum (Novelis X610-T4PD) and 0.9-mm-thick bare aluminum (Novelis X626-T4P) joints was investigated. It was found that while a proper amount of lubricant (~2.21 g/m2, 1.5 μL lubricant on the 25 × 25 mm coupon) applied on the surface of the substrate had little effect on the joint strength, levels more than 2.21 g/m2 lubricant significantly decreased the joint strength. When the lubricant amount exceeds the adhesive’s compatibility with the lubricant, the negative effects of pores from lubricant evaporation during curing on the strength overrides the positive effect of increased adhesion energy. Furthermore, the presence of 2.21 g/m2 lubricant minimized the reduction of the strength of the joints pre-exposed to neutral salt spray (i.e. a concentration of 50 ± 5 g/L sodium chloride solution). Careful analyses of the results indicated that corrosion of aluminum substrate surfaces of the pre-exposed joints led to the degradation in bond adhesion between the adhesive and substrates, and consequently resulted in the decrease of the joint strength. The hydrophobic lubricant protected the aluminum substrate from electrochemical reaction by damage of the bond adhesion between the adhesive and substrates leading to the lubricated joints having better corrosion resistance than the unlubricated joints.
Brain bases of language selection: MEG evidence from Arabic-English bilingual language production

Much of the world's population is bilingual, hence, language selection is a core component of language processing in a significant proportion of individuals. Though language selection has been investigated using artificial cues to language choice such as color, little is known about more ecologically valid cues. We examined with MEG the neurophysiological and behavioral effects of two natural cues: script and cultural context, hypothesizing the former to trigger more automatic language selection. Twenty Arabic-English bilinguals performed a number-naming task with a Match condition, where the cue and target language of response matched, and a Mismatch condition, with opposite instruction. The latter addressed the mechanisms responsible for overriding natural cue-language associations. Early visual responses patterned according to predictions from prior object recognition literature, while at 150–300 ms, the anterior cingulate cortex showed robust sensitivity to cue-type, with enhanced amplitudes to culture trials. In contrast, a mismatch effect for both cue-types was observed at 300–400 ms in the left inferior prefrontal cortex. Our findings provide the first characterization of the spatio-temporal profile of naturally cued language selection and demonstrate that natural but less automatic language-choice, elicited by cultural cues, does not engage the same mechanisms as the clearly unnatural language-choice of our mismatch tasks.
Creating and evaluating a consensus for negated and speculative words in a Swedish clinical corpus

In this paper we describe the creation of a consensus corpus that was obtained through combining three individual annotations of the same clinical corpus in Swedish. We used a few basic rules that were executed automatically to create the consensus. The corpus contains negation words, speculative words, uncertain expressions and certain expressions. We evaluated the consensus using it for negation and speculation cue detection. We used Stanford NER, which is based on the machine learning algorithm Conditional Random Fields for the training and detection. For comparison we also used the clinical part of the BioScope Corpus and trained it with Stanford NER. For our clinical consensus corpus in Swedish we obtained a precision of 87.9 percent and a recall of 91.7 percent for negation cues, and for English with the Bioscope Corpus we obtained a precision of 97.6 percent and a recall of 96.7 percent for negation cues.
Effect of Vitamin C on Glycosylation of Proteins

Twelve nondiabetic subjects consumed 1 g/day vitamin C for 3 mo. A fasting blood sample was taken at the start of the study and at the end of each month for the measurement of plasma and intraerythrocyte glucose, vitamin C, glycosylated hemoglobin (affinity chromatography and electrophoresis), and glycosylated albumin (affinity chromatography). Although there were no significant changes in fasting glycemia, glycosylated hemoglobin (affinity chromatography) decreased 18%, from 6.18 ± 0.48% (mean ± SD) at the start to 5.05 ± 0.50% (P < 0.0001) after 3 mo, whereas, HbA1 measured by electrophoresis increased 16%, from 6.17 ± 0.61 to 7.16 ± 0.59% (P < 0.0001) in this period. Glycosylated albumin decreased 33%, from 1.56 ± 0.24 to 1.04 ± 1.01% (P < 0.0001) after 3 mo. This discrepancy between glycosylated hemoglobin measured by electrophoresis and affinity chromatography was due to methodological differences between the two techniques, with affinity chromatography measuring “true” glycosylated hemoglobin. The greater decrease found with glycosylated albumin was probably due to the different distribution of vitamin C between plasma and within the erythrocyte, levels after 1 mo of supplementation being 109 ± 19 and 59 ± 9 μM, respectively (P < 0.001). This indicates that administration of oral vitamin C may inhibit the glycosylation of proteins in vivo by a competitive mechanism.
Investigation Into the Phase Noise of Modulated Grating Y-Branch Lasers

Theoretical and experimental investigations of the phase noise of modulated grating Y-branch (MGY) lasers are presented, mainly focusing on influence of the additive Vernier effect. A comprehensive simulation model based on transmission line model is developed, taking into account the spontaneous emission noise in the active section, the carrier shot noise in the passive sections, the 1/f noise for the injection currents and the detuned-loading effect induced by the grating reflectors. The phase noise characteristics of the MGY laser and the SGDBR laser are simulated, and compared to find the difference between the additive and multiplicative Vernier effects. The results clearly indicate that the MGY laser exhibits more serious phase noise due to using the additive Vernier effect. It has been found that different super-mode selection methods lead to different reflection characteristics, which play an important role in determining the phase noise. Finally, the phase noise of the MGY laser and the SGDBR laser are measured by using a coherent phase noise measurement technique, the experimental results turn out to be in agreement with the simulations.
Regulation of Transport of the Angiotensin AT2 Receptor by a Novel Membrane-Associated Golgi Protein

Objective— Synthesis and maturation of G protein–coupled receptors are complex events that require an intricate combination of processes including protein folding, posttranslational modifications, and transport through distinct cellular compartments. Little is known concerning the regulation of G protein–coupled receptor transport from the endoplasmic reticulum to the cell surface. Methods and Results— Here we show that the cytoplasmatic carboxy-terminal of the angiotensin AT2 receptor (AT2R) acts independently as an endoplasmic reticulum–export signal. Using a yeast two-hybrid system, we identified a Golgi membrane–associated protein termed ATBP50 (for AT2R binding protein of 50 kDa) that binds to this motif. We also cloned ATBP60 and ATBP135 encoded by the same gene as ATBP50 that mapped to chromosomes 8p21.3. Downregulation of ATBP50 using siRNA leads to retention of AT2R in inner compartments, reduced cell surface expression, and decreased antiproliferative effects of the receptor. Conclusion— Our results indicate that ATBP50 regulates the transport of the AT2R to cell membrane by binding to a specific motif within its cytoplasmic carboxy-terminal and thereby enabling the antiproliferative effects of the receptor.