Miracle-dz/UniFAR-FTUs huggingface dataset:
Familial Risk for Exceptional Longevity

One of the most glaring deficiencies in the current assessment of mortality risk is the lack of information concerning the impact of familial longevity. In this article we update estimates of sibling relative risk of living to extreme ages using data from more than 1700 sibships, and we begin to examine the trend for heritability for different birth-year cohorts. We also build a network model that can be used to compute the increased chance for exceptional longevity of a subject, conditional on his or her family history of longevity. The network includes familial longevity from three generations and can be used to understand the effects of paternal and maternal longevity on an individual's chance to live to an extreme age.
Assessment of the Pharmacogenomics Educational Environment in Southeast Europe

Background/Aims: Pharmacogenomics aims to use the information derived from an individual's genomic profile in the context of individualizing medical treatment modalities. However, currently, pharmacogenomics education is not uniformly provided to health care professionals. This study investigates the status of pharmacogenomics education in Southeast Europe. Methods: University websites served as information sources in order to investigate the discrepancies in pharmacogenomics education in Southeast Europe. In parallel, a survey was conducted at the University of Cagliari (Italy) to test pharmacogenomics knowledge and understanding among specialists, residents and undergraduate students. Results: Our study shows that pharmacogenomics knowledge is not uniformly spread in universities in Southeast Europe and provides the basis for the harmonization of pharmacogenomics education that would directly impact on a smoother integration of pharmacogenomics into mainstream medical practice. Also, a considerable gap in pharmacogenomics education was obvious between the group of specialists and the groups of residents and undergraduate students. Conclusions: Pharmacogenomics education as well as the continuous enrichment of pharmacogenomics knowledge for health care professionals are fundamental approaches toward personalized medicine. Ideally, pharmacogenomics should be taught as a stand-alone course or at least in the context of genetics courses that already exist in universities in Southeast Europe.
Risk factors for revision due to infection after primary total hip arthroplasty

Background and purpose There has been a limited amount of research on risk factors for revision due to infection following total hip arthroplasty (THA), probably due to low absolute numbers of revisions. We therefore studied patient- and surgery-related risk factors for revision due to infection after primary THA in a population-based setting. Materials and methods Using the Danish Hip Arthroplasty Registry, we identified 80,756 primary THAs performed in Denmark between Jan 1, 1995 and Dec 31, 2008. We used Cox regression analysis to compute crude and adjusted relative risk (RR) of revision due to infection. Revision was defined as extraction or exchange of any component due to infection. The median follow-up time was 5 (0–14) years. Results 597 primary THAs (0.7%) were revised due to infection. Males, patients with any co-morbidity, patients operated due to non-traumatic avascular femoral head necrosis, and patients with long duration of surgery had an increased RR of revision due to infection within the total follow-up time. A tendency of increased RR of revision was found for patients who had received cemented THA without antibiotic and hybrid THA relative to patients with cementless implants. Hip diagnosis and fixation technique were not associated with risk of revision due to infection within 1 year of surgery (short-term risk). Interpretation We identified several categories of THA patients who had a higher risk of revision due to infection. Further research is required to explain the mechanism underlying this increased risk. More attention should be paid by clinicians to infection prevention strategies in patients with THA, particularly those with increased risk.
Measurement of social physique anxiety in early adolescence.

PURPOSE The present study assessed the factorial validity and gender invariance of the Social Physique Anxiety Scale (SPAS) using a sample of young adolescents. Existing SPAS 12-item, one- and two-factor and truncated, one-factor (i.e., nine-item and seven-item) measurement models reported in the adult literature were explored, with emphasis placed on the truncated models. METHOD Female (N = 389) and male (N = 225) 9th- and 10th-grade high-school students (mean = 15.2, SD = 0.7 yr) completed the SPAS and a measure of body satisfaction. RESULTS Findings were consistent with previous adult-based SPAS research. The 12-item, one-factor SPAS model did not exhibit a good fit to the data. The 12-item, two-factor model and truncated models exhibited good fits to the data. The truncated models were gender invariant. Latent mean analysis on the truncated models showed girls scored higher on social physique anxiety than boys. Finally, examination of standardized residuals suggested that a different seven-item truncated model from that forwarded in the existing literature best fit the adolescent data. This in part may stem from comprehension problems with one item. CONCLUSION The psychometric properties of the SPAS with a heterogeneous sample of young adolescents suggest that the instrument may be used in research exploring social physique anxiety in adolescence. Given that a different seven-item model emerged in this study than that established in prior research, use of the nine-item truncated version of the SPAS is recommended while further validation work is conducted with adolescent samples.
Inflammation, overhydration and cardiac biomarkers in haemodialysis patients: a longitudinal study.

BACKGROUND Inflammation, overhydration and elevated cardiac biomarkers are related to outcome in haemodialysis (HD) patients. Here, we explored the relationship between the body composition (BC), inflammation and cardiac biomarker concentrations in HD patients longitudinally. METHODS A total of 44 HD patients were followed for 6 months. BC was assessed by multifrequency bioimpedance (BIA). Serum concentrations of cardiac troponin T (cTnT), high-sensitive C-reactive protein (hsCRP), brain natriuretic peptide (BNP) and N-terminal proBNP (NT-proBNP) were assessed at 2 monthly intervals. The longitudinal data analysis was conducted with a marginal model. RESULTS During the follow-up, the parameters describing the BC were highly predictive of both BNP and NT-proBNP and independent of gender, time, hsCRP and cTnT concentrations. The intracellular water (ICW)/body weight (BW) ratio (reflecting malnutrition) exerted a negative effect, whereas the extracellular water (ECW)/BW ratio (reflecting overhydration) had a positive effect on BNP and NT-proBNP concentrations. HsCRP and cTnT concentrations were significantly associated with each other. Furthermore, NT-proBNP concentrations were predictive of cTnT and hsCRP concentrations. CONCLUSIONS In the present study, we find a significant relation between BIA-derived BC parameters and natriuretic peptide concentrations. This relationship was independent of the cardiac history of the patient and suggests that the natriuretic peptide levels are to some degree modifiable by changing a patient's fluid distribution. Moreover, cTnT, BNP, NT-proBNP and hsCRP were significantly related, showing a complex relation between overhydration, malnutrition, inflammation and cardiac biomarkers in dialysis patients.
Joint Congestion Control and Routing Optimization: An Efficient Second-Order Distributed Approach

Distributed joint congestion control and routing optimization has received a significant amount of attention recently. To date, however, most of the existing schemes follow a key idea called the back-pressure algorithm. Despite having many salient features, the first-order subgradient nature of the back-pressure based schemes results in slow convergence and poor delay performance. To overcome these limitations, in this paper, we make a first attempt at developing a second-order joint congestion control and routing optimization framework that offers utility-optimality, queue-stability, fast convergence, and low delay. Our contributions in this paper are three-fold: i) we propose a new second-order joint congestion control and routing framework based on a primal-dual interior-point approach; ii) we establish utility-optimality and queue-stability of the proposed second-order method; and iii) we show how to implement the proposed second-order method in a distributed fashion.
Improving amplify-and-forward relay networks: optimal power allocation versus selection

We consider an amplify-and-forward (AF) cooperative diversity system where a source communicates with a destination with the help of multiple relay nodes. The conventional system assumes all relay nodes participate, with the available channel and power resources equally distributed over all nodes. This approach being clearly sub-optimal, we first present an optimal power allocation scheme to minimize the outage probability for an AF system. Next, we propose a new selection scheme where only one, the "best" relay node is chosen to participate in the transmission. We show that at reasonable power levels the selection AF scheme maintains full diversity order, and has significantly better outage behavior and average throughput than the conventional scheme or that with optimal power allocation
Chromosome translocation induced by the insertion of the URA blaster into the major repeat sequence (MRS) in Candida albicans

Electrophoretic karyotype studies have shown that clinical isolates of Candida albicans have extensive chromosome length polymorphisms. Chromosome translocation is one of the causes of karyotypic variation. Chromosome translocation events have been shown to occur very frequently at or near the major repeat sequence (MRS) on chromosomes. The MRS consists of the repeated sequences RB2, RPS and HOK, and the repeated sequences are considered to be the template for recombination. To investigate which element of the MRS is important for chromosome translocation, we constructed three cassettes, each containing a URA blaster and sequences homologous to one of the repeats, for insertion into the MRS region on the chromosomes. The ura3 strain STN22u2, which shows a stable, standard karyotype, was transformed with each construct. Insertion events with each cassette occurred at almost all chromosomes. Insertion into the RB2 repeat, but not into the RPS repeat, was accompanied by chromosome translocation in some transformants: chromosome translocations between chromosomes R and 7 and chromosomes 1 and 7 were found, as well as deletions of 7A and 7C from chromosome 7. We conclude that the insertion at the RB2 region may initiate chromosome translocation in C. albicans. Copyright © 2004 John Wiley & Sons, Ltd.
Eye-Movement Analysis: A New Tool for Evaluating the Design of Visually Administered Instruments (Paper and Web) By

A data collection instrument that a respondent selfcompletes through the visual channel, such as on paper or over the Web, is visually administered. Although insightful in many ways, traditional methods of evaluating questionnaires, such as cognitive interviewing, usability testing, and experimentation may be insufficient when it comes to evaluating the design of visually administered questionnaires because these methods cannot directly identify information respondents perceive or the precise order in which they observe the information (Redline et al 1998). In this paper, we present the results of a study that was conducted to explore whether eye-movement analysis might prove a promising new tool for evaluating the design of visually administered questionnaires. Eye tracking hardware and software, which were originally developed in the Systems Engineering Department of the University of Virginia for use with computer monitors, were adapted to track the eye movements of respondents answering three versions of a paper questionnaire. These versions were chosen for study because differences in the design of their branching instructions were hypothesized to affect eye-movements, which in turn may affect the accuracy of following the branching instructions (Redline and Dillman Forthcoming).
Continuous Flow Peritoneal Dialysis: Is There a Need for it?

Automated peritoneal dialysis (APD) is the fastest growing technique of peritoneal dialysis. However, recently APD has displayed some limitations imposed by the characteristics of the technique and by the characteristics of the peritoneal membrane of some patients. In general, the advent of a new technique such as continuous flow peritoneal dialysis (CFPD) should be seen as a benefit for several patients based on different considerations: CFPD is a high‐efficiency technique which could overcome some of the limitations imposed by other techniques in terms of adequacy targets and performance. CFPD may become a useful tool to keep patients on PD who would otherwise be transferred to hemodialysis. CFPD may present advantages in terms of biocompatibility and also in terms of the possible modulation of the peritoneal solution to patient needs. Recent developments in technology seem to have made CFPD easily feasible and well tolerated. A new era of PD is probably beginning and CFPD will definitely represent one of the key issues in the future of PD.
Morphological Characters Are Compatible with Mitogenomic Data in Resolving the Phylogeny of Nymphalid Butterflies (Lepidoptera: Papilionoidea: Nymphalidae)

Nymphalidae is the largest family of butterflies with their phylogenetic relationships not adequately approached to date. The mitochondrial genomes (mitogenomes) of 11 new nymphalid species were reported and a comparative mitogenomic analysis was conducted together with other 22 available nymphalid mitogenomes. A phylogenetic analysis of the 33 species from all 13 currently recognized nymphalid subfamilies was done based on the mitogenomic data set with three Lycaenidae species as the outgroups. The mitogenome comparison showed that the eleven new mitogenomes were similar with those of other butterflies in gene content and order. The reconstructed phylogenetic trees reveal that the nymphalids are made up of five major clades (the nymphaline, heliconiine, satyrine, danaine and libytheine clades), with sister relationship between subfamilies Cyrestinae and Biblidinae, and most likely between subfamilies Morphinae and Satyrinae. This whole mitogenome-based phylogeny is generally congruent with those of former studies based on nuclear-gene and mitogenomic analyses, but differs considerably from the result of morphological cladistic analysis, such as the basal position of Libytheinae in morpho-phylogeny is not confirmed in molecular studies. However, we found that the mitogenomic phylogeny established herein is compatible with selected morphological characters (including developmental and adult morpho-characters).
You are where you live: parasitic nematode mitochondrial genome size is associated with the thermal environment generated by hosts

There exists remarkable interspecific variation in mitochondrial sequence evolution rates and in mitochondrial genome sizes. A number of hypotheses based on the forces of mutation and selection have been proposed to explain this variation. Among such hypotheses, we test three: 1) the ‘longevity‐dependent selection’, 2) the ‘functional constraints’ and 3) the ‘race for replication’ hypotheses, using published mtDNA genomic sequences of 47 Nematoda species. We did not find any relationship between body size (used as a proxy for longevity) and genome size or the substitution rate of protein sequences, providing little evidence for the first hypothesis. Parasitic species from different thermal habitats, as determined by their definitive host type (ectothermal vs. endothermal), did not differ in their rates of protein evolution. Therefore, little support was obtained for the second hypothesis. However, we revealed that mitogenomes of parasites of endotherms were significantly smaller than those of parasites of ectotherms, supporting the race for replication hypothesis. As mitochondrial genomes of endothermal animals are usually more compact than those of ectothermal animals, intriguingly, nematode parasites of endotherms and ectotherms exhibit similar patterns of mtDNA length variation to their hosts.
The Hyperstar Interconnection Network

In this paper, a multiprocessor interconnection topology, the hyperstar, based on the Cartesian product of star graphs is studied. The basic properties of the hyperstar are discussed and proved. This includes reduced degree and diameter, hierarchical structure, vertex symmetry, optimal routing, and shortest path characterization. The hyperstar is shown to be a member of the Cayley class of symmetric graphs. Embeddings of hypercubes, star graphs, and meshes are discussed. An optimal one-to-all broadcasting algorithm is obtained and analyzed. Some results on fault tolerance, parallel paths, Hamiltonian cycles, and VLSI layouts are obtained. Furthermore, a comparative study between the hyperstar and seven related networks is conducted. The comparison is based on scalability, broadcasting cost, link requirements, cost/performance ratio, and other static parameters such as degree, diameter, and average diameter.
Mechanical Properties of Nonwoven Reinforced Thermoplastic Polyurethane Composites

Reinforcement of flexible fibre reinforced plastic (FRP) composites with standard textile fibres is a potential low cost solution to less critical loading applications. The mechanical behaviour of FRPs based on mechanically bonded nonwoven preforms composed of either low or high modulus fibres in a thermoplastic polyurethane (TPU) matrix were compared following compression moulding. Nonwoven preform fibre compositions were selected from lyocell, polyethylene terephthalate (PET), polyamide (PA) as well as para-aramid fibres (polyphenylene terephthalamide; PPTA). Reinforcement with standard fibres manifold improved the tensile modulus and strength of the reinforced composites and the relationship between fibre, fabric and composite’s mechanical properties was studied. The linear density of fibres and the punch density, a key process variable used to consolidate the nonwoven preform, were varied to study the influence on resulting FRP mechanical properties. In summary, increasing the strength and degree of consolidation of nonwoven preforms did not translate to an increase in the strength of resulting fibre reinforced TPU-composites. The TPU composite strength was mainly dependent upon constituent fibre stress-strain behaviour and fibre segment orientation distribution.
Auxiliary Deep Generative Models

Deep generative models parameterized by neural networks have recently achieved state-of-the-art performance in unsupervised and semi-supervised learning. We extend deep generative models with auxiliary variables which improves the variational approximation. The auxiliary variables leave the generative model unchanged but make the variational distribution more expressive. Inspired by the structure of the auxiliary variable we also propose a model with two stochastic layers and skip connections. Our findings suggest that more expressive and properly specified deep generative models converge faster with better results. We show state-of-the-art performance within semi-supervised learning on MNIST, SVHN and NORB datasets.
Prevalence and Genetic Structures of Streptococcus pneumoniae Serotype 6D, South Korea

To determine prevalence and genetic structures of new serotype 6D strains of pneumococci, we examined isolates from diverse clinical specimens in South Korea during 1991–2008. Fourteen serotype 6D strains accounted for 10.4% of serogroup 6 pneumococci from blood, sputum, nasopharynx, and throat samples. Serotype 6D strains consisted of 3 sequence types.
Clinical Applications of Platelet-Rich Plasma in Patellar Tendinopathy

Platelet-rich plasma (PRP), a blood derivative with high concentrations of platelets, has been found to have high levels of autologous growth factors (GFs), such as transforming growth factor-β (TGF-β), platelet-derived growth factor (PDGF), fibroblastic growth factor (FGF), vascular endothelial growth factor (VEGF), and epidermal growth factor (EGF). These GFs and other biological active proteins of PRP can promote tissue healing through the regulation of fibrosis and angiogenesis. Moreover, PRP is considered to be safe due to its autologous nature and long-term usage without any reported major complications. Therefore, PRP therapy could be an option in treating overused tendon damage such as chronic tendinopathy. Here, we present a systematic review highlighting the clinical effectiveness of PRP injection therapy in patellar tendinopathy, which is a major cause of athletes to retire from their respective careers.
Different activities of the frizzled-related proteins frzb2 and sizzled2 during Xenopus anteroposterior patterning.

In a search for factors that regulate patterning of the Xenopus anteroposterior (A/P) axis, particularly the anterior ectoderm, we isolated two members of the Frizzled-related protein (FRP) gene family that are thought to encode antagonists of Wnt signaling. frzb2 is expressed in head mesoderm while sizzled2 is expressed in ventral ectoderm and mesoderm, tissues that modulate anterior fates. Consistent with a role for these genes in A/P patterning, ectopically expressed frzb2 inhibited head formation, while sizzled2 dorsalized embryos, causing expansion of the head. The different activities of frzb2 and sizzled2 may be explained by their interaction with distinct proteins since frzb2 is an inhibitor of Xwnt8 activity, while sizzled2 is unable to inhibit the activity of Xwnt8 or any other Xwnt tested. The data suggest that anteroposterior patterning is modulated by multiple components of the Wnt signaling pathway.
Auditory Localization Abilities in Bilateral Cochlear Implant Recipients

Objective: To quantify binaural advantage for auditory localization in the horizontal plane by bilateral cochlear implant (CI) recipients. Also, to determine whether the use of dual microphones with one implant improves localization. Methods: Twenty subjects from the UK multicenter trial of bilateral cochlear implantation with Nucleus 24 K/M device were recruited. Sound localization was assessed in an anechoic room with an 11-loudspeaker array under four test conditions: right CI, left CI, binaural CI, and dual microphone. Two runs were undertaken for each of five stimuli (speech, tones, noise, transients, and reverberant speech). Order of conditions was counterbalanced across subjects. Results: Mean localization error with bilateral implants was 24° compared with 67° for monaural implant and dual microphone conditions (chance performance is 65°). Normal controls average 2 to 3° in similar conditions. Binaural performance was significantly better than monaural performance for all subjects, for all stimulus types, and for different sound sources. Only small differences in performance with different stimuli were observed. Conclusions: Bilateral cochlear implantation with the Nucleus 24 device provides marked improvement in horizontal plane localization abilities compared with unilateral CI use for a range of stimuli having different spectral and temporal characteristics. Benefit was obtained by all subjects, for all stimulus types, and for all sound directions. However, binaural performance was still worse than that obtained by normal hearing listeners and hearing aid users with the same methodology. Monaural localization performance was at chance. There is no benefit for localization with dual microphones.