Miracle-dz/UniFAR-FTUs huggingface dataset:
Comparison between microfabrication technologies for metal tooling

Abstract This paper is based on the information gathered within the Multi-Material Micro-Manufacture (4M) Network activities in the Processing of Metals Division (Task 7.2 ‘Tooling’) (www.4m-net.org). The aim of the task involves a systematic analysis of the partners' expertise in different microtechnologies for processing tooling inserts made of metal. The following technologies have been analysed: micromilling, micro-electrodischarge machining (EDM, including wire-EDM, sinking-EDM, and EDM-milling), laser micromachining, electroforming, and electrochemical milling (ECF) (an electrochemical machining innovative process proposed by HSG-IMAT). Considered tool-insert materials are nickel for electroforming, stainless steel for ECF, and tool steel (AISI H13) for all other processes. Typical features (ribs, channels, pins, and holes) required by micro-optics, microfluidics, and sensor and actuator applications have been selected to form the benchmark part and to carry out this analysis. The results provide a global comparison between the micromanufacturing processes mentioned earlier in terms of technical capabilities and cost effectiveness of different feature machinings. As a second result, the current limitations of these technologies concerning feature sizes, surface finish, aspect ratios, etc. have been identified. The main conclusion drawn is the absence of a consolidated technology to produce three-dimensional free-form shapes smaller than 100–200 μm to date.
Human Cytomegalovirus Infection Elicits New Decidual Natural Killer Cell Effector Functions

During the first trimester of pregnancy the uterus is massively infiltrated by decidual natural killer cells (dNK). These cells are not killers, but they rather provide a microenvironment that is propitious to healthy placentation. Human cytomegalovirus (HCMV) is the most common cause of intrauterine viral infections and a known cause of severe birth defects or fetal death. The rate of HCMV congenital infection is often low in the first trimester of pregnancy. The mechanisms controlling HCMV spreading during pregnancy are not yet fully revealed, but evidence indicating that the innate immune system plays a role in controlling HCMV infection in healthy adults exists. In this study, we investigated whether dNK cells could be involved in controlling viral spreading and in protecting the fetus against congenital HCMV infection. We found that freshly isolated dNK cells acquire major functional and phenotypic changes when they are exposed to HCMV-infected decidual autologous fibroblasts. Functional studies revealed that dNK cells, which are mainly cytokines and chemokines producers during normal pregnancy, become cytotoxic effectors upon their exposure to HCMV-infected autologous decidual fibroblasts. Both the NKG2D and the CD94/NKG2C or 2E activating receptors are involved in the acquired cytotoxic function. Moreover, we demonstrate that CD56pos dNK cells are able to infiltrate HCMV-infected trophoblast organ culture ex-vivo and to co-localize with infected cells in situ in HCMV-infected placenta. Taken together, our results present the first evidence suggesting the involvement of dNK cells in controlling HCMV intrauterine infection and provide insights into the mechanisms through which these cells may operate to limit the spreading of viral infection to fetal tissues.
Sequential Gastroenteritis Episodes Caused by 2 Norovirus Genotypes

We investigated sequential episodes of acute norovirus gastroenteritis in a young child within an 11-month period. The infections were caused by 2 distinct genotypes (GII.4 and GII.6). Failure to achieve cross-protective immunity was linked to absence of an enduring and cross-reactive mucosal immune response, a critical consideration for vaccine design.
Transfer Length in Prestressed Self-Consolidating Concrete Box and I-Girders

Self-consolidating concrete (SCC) has garnered significant interest since first emerging as a structural material in the late 1980s. Concern about early-age bond behavior between SCC and prestressing strands, however, has been a limiting factor in using the material in prestressed members. This paper aims to investigate the transfer length of 12.7 mm (0.5 in.) diameter steel strands in fullscale prestressed box and I-beams cast with SCC. This paper first presents the experimental results of pullout tests on steel strands embedded in SCC and conventional concrete (CC) blocks. Next, the experimental results of transfer length tests on two box beams and two I-beams are presented for 1, 3, 7, 14, and 28 days after casting. The results are compared to current design codes and transfer lengths predicted by other researchers.
AlleleRetain: a program to assess management options for conserving allelic diversity in small, isolated populations

Preserving genetic health is an important aspect of species conservation. Allelic diversity is particularly important to conserve, as it provides capacity for adaptation and thus enables long‐term population viability. Allele retention is difficult to predict beyond one generation for real populations with complex demography and life‐history traits, so we developed a computer model to simulate allele retention in small populations. AlleleRetain is an individual‐based model implemented in r and can be applied to assess management options for conserving allelic diversity in small populations of animals with overlapping generations. AlleleRetain remedies the limitations of similar existing software, and its source code is freely available for further modification. AlleleRetain and its supporting materials can be downloaded from https://sites.google. com/site/alleleretain/ or CRAN (http://cran.r-project.org).
Physician Recommendations Regarding SIDS Risk Reduction: A National Survey of Pediatricians and Family Physicians

Background: Sudden infant death syndrome (SIDS) is a leading cause of death among infants. Recently, new SIDS risk factors have emerged. Objective: To determine knowledge and recommendations of pediatricians and family physicians regarding SIDS-relevant practices. Methods: Cross-sectional survey of 3005 pediatricians and family physicians. Results: Of the 783 respondents, pediatricians comprised 64% and females 52%; 78% recognized supine as the recommended sleep position; 69% recommended supine. Almost all physicians recommended a firm mattress, 82% recommended a crib or bassinet, and 42% recommended a separate room for infants; 63% had no preference about or did not recommend restricting pacifier use. Pediatricians were more likely to discuss infant sleep position and room sharing at every well-child visit. Conclusions: Knowledge about recommended infant sleep position is relatively high, but there are gaps in physician knowledge regarding safe sleep recommendations. Greater dissemination of information is required, and barriers to implementation need to be identified and addressed.
General and MicroRNA-Mediated mRNA Degradation Occurs on Ribosome Complexes in Drosophila Cells

ABSTRACT The translation and degradation of mRNAs are two key steps in gene expression that are highly regulated and targeted by many factors, including microRNAs (miRNAs). While it is well established that translation and mRNA degradation are tightly coupled, it is still not entirely clear where in the cell mRNA degradation takes place. In this study, we investigated the possibility of mRNA degradation on the ribosome in Drosophila cells. Using polysome profiles and ribosome affinity purification, we could demonstrate the copurification of various deadenylation and decapping factors with ribosome complexes. Also, AGO1 and GW182, two key factors in the miRNA-mediated mRNA degradation pathway, were associated with ribosome complexes. Their copurification was dependent on intact mRNAs, suggesting the association of these factors with the mRNA rather than the ribosome itself. Furthermore, we isolated decapped mRNA degradation intermediates from ribosome complexes and performed high-throughput sequencing analysis. Interestingly, 93% of the decapped mRNA fragments (approximately 12,000) could be detected at the same relative abundance on ribosome complexes and in cell lysates. In summary, our findings strongly indicate the association of the majority of bulk mRNAs as well as mRNAs targeted by miRNAs with the ribosome during their degradation.
The gaps in anaphylaxis diagnosis and management by French physicians

Several studies have assessed the knowledge of health professionals in recognition and treatment of anaphylaxis using case-based surveys with conflicting results [1-3]. The proportion of responders able to recognize anaphylaxis and treat with appropriate adrenaline ranged from 56% to 95% [1, 3]. The causes for this under optimal management are not clearly understood. In this context, EAACI anaphylaxis guidelines were recently updated. This article is protected by copyright. All rights reserved.
Cyanobacteria Diversity in Eutrophic Lake of Yunnan, China

Cyanobacteria are widespread in eutrophic freshwater lakes and can produce potent toxins which pose serious risk for human and animal health, aquatic ecosystem sustainability and economic vitality. There are 9 major lakes, which eutrophication and related ecological problem had occurred in most of these lakes in Yunnan, China. In this study, water samples were collected at different sampling time from five freshwater plateau lakes, which located in the middle area of Yunnan province, to assess the cyanobacteria diversity vary with the seasons. The morphological character of cyanobacteria were observed by light microscope (LM), the genetic diversity of cyanobacteria had been demonstrated by constructed phylogenetic trees based on DNA sequence of cyanobacteria 16S-23S rRNA internal space (ITS). The results showed that a variety of cyanobacterial species were distributed in five plateau freshwater lakes. The cyanobacterial population consisted mainly of several Microcystis species as dominants in Dianchi Lake and the dominant species of cyanobacteria found in June to October of 2009 was Microcystis aeruginosa. The diversity of cyanobacteria in Caohai was higher than that of Waihai in Dianchi Lake.
Exercise as Medicine for the Treatment of Brain Dysfunction: Evidence for Cortical Stroke, Cerebellar Ataxia, and Parkinson’s Disease

This review addresses the role of exercise as an intervention for treating neurological disease. It focuses on three major neurological diseases that either present in acute or neurodegenerative forms—Parkinson’s disease, cerebellar ataxia, and cortical stroke. Each of the diseases affects primarily different brain structures, namely the basal ganglia, the cerebellum, and the cerebrum. These structures are all known to be involved in motor control, and the dysfunction of each structure leads to distinct movement deficits. The review summarizes current knowledge on how exercise can aid rehabilitation or therapeutic efforts. In addition, it addresses the role of robotic devices in enhancing available therapies by reviewing how robot-aided therapies may promote the recovery for stroke survivors. It highlights recent scientific evidence in support of exercise as a treatment for brain dysfunction, but also outlines the still open challenges for unequivocally demonstrating the benefits of exercise.
Effect of breed on fatty acid composition and lipogenic enzyme abundance in the subcutaneous adipose tissue of pigs.

UNLABELLED This study investigated the role of lipogenic enzyme expression in breed-specific fat deposition in pigs. OBJECTIVES (i) determine effect of breed on the relative abundance of the key lipogenic enzymes stearoyl-CoA desaturase (SCD), delta-6 desaturase (Δ6D), and fatty acid synthase (FAS) in pig subcutaneous adipose tissue. (ii) Investigate breed-specific relationships between lipogenic enzyme abundance and fatty acid composition. Large White × Piétrain, Piétrain, and Duroc × Piétrain pigs were used. Expression of SCD, Δ6D, and FAS was analyzed by Western blotting. Fatty acid composition was determined by gas chromatography. FAS protein in Large White × Piétrain pigs was similar to the Piétrain breed, but was significantly higher than Duroc × Piétrain. A positive relationship was found between FAS abundance and the saturated fatty acids (SFAs), for Large White × Piétrain pigs, but not for the other breeds. Δ6D was significantly higher in Large White × Piétrain compared with Duroc × Piétrain and Piétrain. This was accompanied by significantly higher total n-3 poly-unsaturated fatty acids (PUFAs) in the Large White × Piétrain when compared to the other breeds. CONCLUSIONS (i) increased subcutaneous adipose tissue SFA content in Large White × Piétrain pigs (but not Piétrain and Duroc × Piétrain) is related to increased abundance of FAS protein; (ii) high n-3 PUFA content in Large White × Piétrain pigs is related to activation of Δ6D protein synthesis; (iii) SCD and Δ6D abundance does not contribute to between-breed differences in MUFA and n-6 PUFA content of pig subcutaneous adipose tissue.
Identification of a Novel Point Mutation of Mouse Proto-Oncogene c-kit Through N-Ethyl-N-nitrosourea Mutagenesis Sequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY536430 and AY536431.

Manipulation of the mouse genome has emerged as an important approach for studying gene function and establishing human disease models. In this study, the mouse mutants were generated through N-ethyl-N-nitrosourea (ENU)-induced mutagenesis in C57BL/6J mice. The screening for dominant mutations yielded several mice with fur color abnormalities. One of them causes a phenotype similar to that shown by dominant-white spotting (W) allele mutants. This strain was named Wads because the homozygous mutant mice are white color, anemic, deaf, and sterile. The new mutation was mapped to 42 cM on chromosome five, where proto-oncogene c-kit resides. Sequence analysis of c-kit cDNA from Wadsm/m revealed a unique T-to-C transition mutation that resulted in Phe-to-Ser substitution at amino acid 856 within a highly conserved tyrosine kinase domain. Compared with other c-kit mutants, Wads may present a novel loss-of-function or hypomorphic mutation. In addition to the examination of adult phenotypes in hearing loss, anemia, and mast cell deficiency, we also detected some early developmental defects during germ cell differentiation in the testis and ovary of neonatal Wadsm/m mice. Therefore, the Wads mutant may serve as a new disease model of human piebaldism, anemia, deafness, sterility, and mast cell diseases.
Using the Virtual Reality-Cognitive Rehabilitation Approach to Improve Contextual Processing in Children with Autism

Background. This pilot study investigated the efficacy of a novel virtual reality-cognitive rehabilitation (VR-CR) intervention to improve contextual processing of objects in children with autism. Previous research supports that children with autism show deficits in contextual processing, as well as deficits in its elementary components: abstraction and cognitive flexibility. Methods. Four children with autism participated in a multiple-baseline, single-subject study. The children were taught how to see objects in context by reinforcing attention to pivotal contextual information. Results. All children demonstrated statistically significant improvements in contextual processing and cognitive flexibility. Mixed results were found on the control test and changes in context-related behaviours. Conclusions. Larger-scale studies are warranted to determine the effectiveness and usability in comprehensive educational programs.
Hypercalcaemia is associated with poor mental health in haemodialysis patients: results from Japan DOPPS.

BACKGROUND The Dialysis Outcomes and Practice Patterns Study (DOPPS) reported high incidence of depression in haemodialysis patients. Hypercalcaemia and high parathyroid hormone (PTH) levels are aetiological factors of psychological disorders. We examined the association between mineral metabolism abnormalities and mental health in Japanese-DOPPS patients. METHODS We used baseline data of Japan-DOPPS, Phase 1 (2755 patients, 1999-2001) and Phase 2 (2286 patients, 2002-03). The outcome variable was mental health using the mental health domain of SF-36. We examined the association between serum corrected calcium, phosphorus, calcium x phosphorus product and intact PTH concentrations, and mental health using analysis of covariance and also the associations between corrected calcium levels and current use of vitamin D and calcium-containing phosphate binder. RESULTS There was a significant association between mental health and corrected calcium levels. A significantly lower mental health score was noted in patients with corrected calcium > or = 11 mg/dl than in <8.4 (P = 0.04), > or =8.4 to <10.2 (P = 0.009) and > or =10.2 to <11 mg/dl (P = 0.003). The association was significant even after adjustment for age, sex and other confounders. However, there was no relationship between intact PTH and mental health. High-corrected calcium levels were significantly associated with the use of intravenous active vitamin D and calcium-containing phosphate binder. CONCLUSIONS Hypercalcaemia, but not high intact PTH, is associated with poor mental health in dialysis patients. While a cause-effect relationship between hypercalcaemia and deterioration of mental health needs further confirmation by longitudinal and prospective studies, our observational findings suggest the importance of control of serum calcium concentration in dialysis patients.
Order and disorder control the functional rearrangement of influenza hemagglutinin

Significance Influenza hemagglutinin (HA), a viral surface glycoprotein, undergoes a critical and large conformational rearrangement to promote fusion of the viral membrane with the host membrane. Unlike the variable receptor binding domain HA1, the coiled-coil domain HA2 is highly conserved, making HA2 a promising target for therapeutics. Furthermore, the structural similarity between influenza HA2 and other viral fusion proteins, including that of HIV, makes HA2 a valuable model system. We build a model using information from only the prefusion and postfusion configurations of HA2 and use molecular dynamics simulations to characterize the structural ensembles found during the conformational transition. We find that local unfolding facilitates interaction of HA2 with the host membrane and enables a quasi-stable asymmetric intermediate during the transition. Influenza hemagglutinin (HA), a homotrimeric glycoprotein crucial for membrane fusion, undergoes a large-scale structural rearrangement during viral invasion. X-ray crystallography has shown that the pre- and postfusion configurations of HA2, the membrane-fusion subunit of HA, have disparate secondary, tertiary, and quaternary structures, where some regions are displaced by more than 100 Å. To explore structural dynamics during the conformational transition, we studied simulations of a minimally frustrated model based on energy landscape theory. The model combines structural information from both the pre- and postfusion crystallographic configurations of HA2. Rather than a downhill drive toward formation of the central coiled-coil, we discovered an order-disorder transition early in the conformational change as the mechanism for the release of the fusion peptides from their burial sites in the prefusion crystal structure. This disorder quickly leads to a metastable intermediate with a broken threefold symmetry. Finally, kinetic competition between the formation of the extended coiled-coil and C-terminal melting results in two routes from this intermediate to the postfusion structure. Our study reiterates the roles that cracking and disorder can play in functional molecular motions, in contrast to the downhill mechanical interpretations of the “spring-loaded” model proposed for the HA2 conformational transition.
Online Instrumental Variable Regression with Applications to Online Linear System Identification

Instrumental variable regression (IVR) is a statistical technique utilized to recover unbiased estimators when there are errors in the independent variables. Estimator bias in learned time series models can yield poor performance in applications such as long-term prediction and filtering where the recursive use of the model results in the accumulation of propagated error. However, prior work addressed the IVR objective in the batch setting, where it is necessary to store the entire dataset in memory — an infeasible requirementin large dataset scenarios. In this work, we develop Online Instrumental Variable Regression (OIVR), an algorithm that is capable of updating the learned estimator with streaming data. We show that the online adaptation of IVR enjoys a no-regret performance guarantee with respect the original batchsetting by taking advantage of any no-regret online learning algorithm inside OIVR for the underlying update steps. We experimentally demonstrate the efficacy of our algorithm in combination with popular no-regret onlinealgorithms for the task of learning predictive dynamical system models and on a prototypical econometrics instrumental variable regression problem.
Adaptive Ridge Regression for Rare Variant Detection

It is widely believed that both common and rare variants contribute to the risks of common diseases or complex traits and the cumulative effects of multiple rare variants can explain a significant proportion of trait variances. Advances in high-throughput DNA sequencing technologies allow us to genotype rare causal variants and investigate the effects of such rare variants on complex traits. We developed an adaptive ridge regression method to analyze the collective effects of multiple variants in the same gene or the same functional unit. Our model focuses on continuous trait and incorporates covariate factors to remove potential confounding effects. The proposed method estimates and tests multiple rare variants collectively but does not depend on the assumption of same direction of each rare variant effect. Compared with the Bayesian hierarchical generalized linear model approach, the state-of-the-art method of rare variant detection, the proposed new method is easy to implement, yet it has higher statistical power. Application of the new method is demonstrated using the well-known data from the Dallas Heart Study.
The effect of selection on genetic variability: a simulation study.

Computer simulations have been done to study the effects of stabilizing and disruptive selection on a polygenic character. The results are reported in terms of three components of genetic variability which represent changes in gene frequencies, departures from Hardy–Weinberg equilibrium and linkage disequilibrium respectively. Under random mating the first and third components are the most important. The observed changes in gene frequencies are interpreted in the light of previous theoretical work on the stability of equilibria under selection. In addition, large and rapid changes in the genotypic variance result from the generation of linkage disequilibrium under selection; the observed changes are in good agreement with those predicted on theoretical grounds.