Miracle-dz/UniFAR-FTUs huggingface dataset:
The re-discovered Maculinea rebeli (Hirschke, 1904): Host ant usage, parasitoid and initial food plant around the type locality with taxonomical aspects (Lepidoptera, Lycaenidae)

Abstract The taxonomy of the myrmecophilous Maculinea alcon group (Lepidoptera: Lycaenidae) is highly debated. The host-plant and host-ant usage of these butterflies have conventionally been important in their identification. Maculinea ‘rebeli’ has generally been considered to be the xerophilous form of Ma. alcon (Ma. alcon X hereafter) with Gentiana cruciata as initial food plant. However, the type locality and all other known sites of Ma. rebeli are found above the coniferous zone, and are well separated from the lower regions where Ma. alcon X sites are found. Furthermore, no food plant and host ant data for the nominotypic Ma. rebeli have yet been published. Our aim was therefore to identify the host ant(s) of Ma. rebeli around the type locality and compare this with the host ant usage of nearby Ma. alcon X. Nests of Myrmica spp. (Hymenoptera: Formicidae) close to the host plants were opened on one Ma. alcon X (host plant: Gentiana cruciata) and two Ma. rebeli (host plant: Gentianella rhaetica, first record, confirmed by oviposition and emerging larvae) sites just before the flying period, to find prepupal larvae and pupae. Three Myrmica species (My. lobulicornis, My. ruginodis, My. sulcinodis) were found on the two Ma. rebeli sites, which parasitized exclusively My. sulcinodis (22 individuals in 7 nests). On the Ma. alcon X site Myrmica sabuleti and My. lonae were found, with My. sabuleti the exclusive host (51 individuals in 10 nests). Ichneumon cf. eumerus parasitized both butterflies. The results highlight the differentiation of Maculinea rebeli from Ma. alcon X, from both conservation biological and ecological points of view. Thus, it should be concluded that Ma. rebeli does not simply represent an individual form of Ma. alcon but it can be considered as at least an ecological form adapted to high mountain conditions both in its initial food plant and host ant species. In addition, it should be emphasized that Ma. alcon X (= Ma. rebeli auct. nec Hirschke) cannot be synonymised with Ma. rebeli (Hirschke, 1904).
Diversity of Micrurus Snake Species Related to Their Venom Toxic Effects and the Prospective of Antivenom Neutralization

Background Micrurus snake bites can cause death by muscle paralysis and respiratory arrest, few hours after envenomation. The specific treatment for coral snake envenomation is the intravenous application of heterologous antivenom and, in Brazil, it is produced by horse immunization with a mixture of M. corallinus and M. frontalis venoms, snakes that inhabit the South and Southeastern regions of the country. However, this antivenom might be inefficient, considering the existence of intra- and inter-specific variations in the composition of the venoms. Therefore, the aim of the present study was to investigate the toxic properties of venoms from nine species of Micrurus: eight present in different geographic regions of Brazil (M. frontalis, M. corallinus, M. hemprichii, M. spixii, M. altirostris, M. surinamensis, M. ibiboboca, M. lemniscatus) and one (M. fulvius) with large distribution in Southeastern United States and Mexico. This study also analyzed the antigenic cross-reactivity and the neutralizing potential of the Brazilian coral snake antivenom against these Micrurus venoms. Methodology/Principal Findings Analysis of protein composition and toxicity revealed a large diversity of venoms from the nine Micrurus species. ELISA and Western blot assays showed a varied capability of the therapeutic antivenom to recognize the diverse species venom components. In vivo and in vitro neutralization assays indicated that the antivenom is not able to fully neutralize the toxic activities of all venoms. Conclusion These results indicate the existence of a large range of both qualitative and quantitative variations in Micrurus venoms, probably reflecting the adaptation of the snakes from this genus to vastly dissimilar habitats. The data also show that the antivenom used for human therapy in Brazil is not fully able to neutralize the main toxic activities present in the venoms from all Micrurus species occurring in the country. It suggests that modifications in the immunization scheme, with the inclusion of other venoms in the antigenic mixture, should occur in order to generate effective therapeutic coral snake antivenom.
Synaptic relationships between hair follicle afferents and neurones expressing GABA and glycine‐like immunoreactivity in the spinal cord of the rat

γ‐Aminobutyric acid (GABA) and glycine have been implicated in the inhibition of sensory pathways in the dorsal horn of the spinal cord. The object of this study is to investigate the interactions between neurones immunoreactive for GABA and/or glycine and hair follicle afferent terminals labelled by intracellular injection with neurobiotin. GABA and glycine‐like immunoreactivity in axons and dendrites in synaptic contact with the afferent terminals was demonstrated by using a postembedding immunogold method, and serial section reconstruction was used to show the distribution and nature of these interactions in lamina III of the dorsal horn. Most afferent boutons (94%) were postsynaptic at axo‐axonic synapses: 67% of presynaptic boutons presynaptic to the afferent terminals were immunoreactive for GABA and glycine, 24% for GABA alone, and 7% for glycine alone. Only a small percentage of dendrites postsynaptic to afferent boutons appeared to belong to inhibitory interneurones: 3% were immunoreactive for GABA and glycine, 10% for glycine alone, but 87% were immunoreactive for neither antibody. Many afferent boutons were the central terminals of what appeared to be type IIb glomeruli and were involved triadic synaptic arrangements at which boutons presynaptic to an afferent terminal also made axodendritic contacts with dendrites postsynaptic to the afferent. Many of the presynaptic boutons involved in the triads were immunoreactive for GABA and glycine. Because afferent terminals do not themselves express glycine receptors (Mitchell et al. [ 1993 ] J. Neurosci. 13:2371–2381), glycine may therefore act on dendrites postsynaptic to hair follicle afferent terminals at these triads. J. Comp. Neurol. 452:367–380, 2002. © 2002 Wiley‐Liss, Inc.
Agile metrics at the Israeli Air Force

It is a significant challenge to implement and research agile software development methods in organizations such as the army. Since it differs from organizations in the industry and the academia, data gathered in the army and its continuous analysis may enrich the community knowledge abut agile methods. This work describes a research, conducted during an entire release, about one development team at the Israeli Air Force that works according to Extreme Programming. The establishment of this team and the investigation of the first release is part of a long-term process, started last year, aiming to reduce delivery time while raising communication and customer collaboration. Among several themes this research is concerned with, we focus on agile metrics and provide a metrics mechanism that was established and refined along the release development.
Cediranib in combination with mFOLFOX6 in Japanese patients with metastatic colorectal cancer: results from the randomised phase II part of a phase I/II study.

BACKGROUND Colorectal cancer (CRC) is the second most common malignancy in Japan. Treatment with inhibitors of the vascular endothelial growth factor (VEGF) signalling pathway has proven benefit in metastatic CRC. Cediranib is an oral highly potent VEGF signalling inhibitor that inhibits all three VEGF receptors. PATIENTS AND METHODS In this phase II, double-blind, placebo-controlled study, 172 patients with metastatic CRC were randomised to receive once-daily cediranib (20 or 30 mg) or placebo, each combined with modified FOLFOX6 (mFOLFOX6). The primary objective was comparison of progression-free survival (PFS). RESULTS The comparison of cediranib 20 mg versus placebo met the primary objective of PFS prolongation [hazard ratio = 0.70 (95% confidence interval 0.44-1.11), P = 0.167], which met the protocol-defined criterion of P < 0.2. Median PFS was 10.2 versus 8.3 months, respectively. The PFS comparison for cediranib 30 mg versus placebo did not meet the criterion. The most common adverse events (AEs) in the cediranib-containing groups were diarrhoea and hypertension. CONCLUSIONS Cediranib 20 mg plus mFOLFOX6 met the predefined criteria in terms of improved PFS compared with placebo plus mFOLFOX6. Cediranib 20 mg was generally well tolerated and the AE profile was consistent with previous studies.
Association of Chlamydia Pneumoniae Infection With Atherosclerotic Plaque Formation

Atherosclerosis is a complex multifactorial disorder. Studies show that infectious microbial agents may play an important role in the development of atherosclerosis; however, these findings are conflicting. This study investigated the presence of Chlamydia pneumoniae DNA in atherosclerotic plaques of patients suffering from coronary artery disease. In a cross-sectional study, 85 patients (43 females and 42 males with mean age of 61±9.5, range 42-82 years) referred for coronary artery bypass grafting (CABG) and thoracic biopsy as the control groups were enrolled for this study. Standard questionnaires, including demographic and clinical evaluation were administered. Obtained specimens were processed and then nested polymerase chain reaction with primers for Pst1 fragment was carried out to detect Chlamydia pneumoniae DNA. Statistical analysis was done using the SPSS software. Of note, in 25 out of the 85 patients (29.4%), C. pneumoniae was detected within atherosclerotic plaques, whereas, 5 out of the 85 thoracic biopsy (5.9%) were positive for the presence of the mentioned bacteria in internal thoracic artery. There was a statistically significant association between atherosclerotic plaque (study group) and thoracic biopsy (control group) in terms of C. pneumoniae positivity (P=0.0001). The findings of this study support the hypothesis that C. pneumoniae is associated with atherosclerosis.
CMIP5 drought projections in Canada based on the Standardized Precipitation Evapotranspiration Index

Abstract Drought projections on seasonal to annual time scales are presented for Canada over the twenty-first century, based on the Standardized Precipitation Evapotranspiration Index (SPEI). Results make use of bias-corrected temperature and precipitation projections from 29 global climate models participating in the Coupled Model Intercomparison Project Phase 5 (CMIP5), and include three different forcing scenarios (RCP2.6, RCP4.5 and RCP8.5). Large differences in projected drought changes are observed among different regions. On the annual time scale, southwestern Canada and the Prairies may experience an increase in drying under a warmer climate. On the other hand, coastal regions, including northern Canada, the northwest Pacific coast and the Atlantic region, show a small increase in wetness. Winter and spring SPEI results depict an increase in wetting, reflecting the projected country-wide winter and spring precipitation increases under climate change. For the most part, autumn and summer show increases in drying. The largest relative changes in both summer drying and winter wetting were found over northern regions, but the offsetting seasonal effects typically balance out to yield various degrees of wetting on the annual scale for this region. The projected drought responses are relatively modest in the weak forcing scenario (RCP2.6) for most Canadian regions. In addition, even for regions most affected, a marked increase in surface water deficit might not occur until the second half of this century. Inter-model variation (a crude measure of projection uncertainty) typically increases with forcing intensity and lead time, and is generally greater in northern and western Canada.
A fused score for ranking and evaluation using multiple performance metrics

Performance evaluation and ranking based on multiple performance metrics are required in many fields. These metrics have commonality since they evaluate the same thing despite in different aspects. If the performance is deemed good in all metrics, the overall performance is indeed good. In view of this, making full use of this commonality should be good for ranking and evaluation. Voting theory deals with problems that are quite similar to ours if we treat algorithms and metrics, respectively, as candidates and voters. Many criteria have been proposed in voting theory to justify voting methods. In this paper, we propose a new score, named comprehensive score of performance (CSP) considering these criteria. Its main idea is to measure the difference between the cumulative distribution functions of the perfect algorithm and the one to be evaluated. CSP fuses multiple metrics by considering their commonality. Also, it fuses preference information and numerical information. Ranking should rely mainly on preference information and evaluation should rely mostly on numerical information. Thus CSP is suitable for both evaluation and ranking. Moreover, CSP can comprehensively reflect the statistic characteristics of the performance and is also monotonic, consistent, and transitive. Two illustrative examples are presented to demonstrate the effectiveness and appropriateness of the CSP.
Articulated coordination of the right arm underlies control of bow parameters and quick bow reversals in skilled cello bowing

Stringed instrument bowing is a complex coordinative motor skill acquired though years of intense practice. We apply a novel “freezing” analysis to investigate how movement at different joints contributes to bow transport (movement amplitude), stabilization of bow parameters (angle, velocity) during bow movements, and quick reversals of bow direction (acceleration amplitude). Participants were ten advanced or professional cellists (19–32 years, at least 10 years of practice) and ten age-matched novice players. Arm and bow movements were recorded using 3D motion capture. To assess how performance depends on articulated use of the right arm, actual data were compared to surrogate data, generated by artificially removing movement at (“freezing”) individual joints in measured arm movements. This analysis showed that both elbow and shoulder significantly contribute to bow transport in experts, while only the shoulder contributed to bow transport in novices. Moreover, experts showed more strongly increased variability of bow parameters and reduced acceleration amplitudes at bow reversals for surrogate compared to actual movement data. This indicates that movement across joints was organized to reduce bow variability and achieve quick bow reversals. Corresponding effects were less pronounced or absent in the novices, in particular for the wrist and elbow. Our results demonstrate the importance of articulated use of the right arm and clarify the contribution of different joints in experts’ bowing performance. Moreover, they support theories of motor control and learning that propose exploitation of biomechanical degrees of freedom, in particular of distal joints, as a critical component in skilled motor performance.
Schizosaccharomyces pombe Checkpoint Response to DNA Interstrand Cross-Links

ABSTRACT Drugs that produce covalent interstrand cross-links (ICLs) in DNA remain central to the treatment of cancer, but the cell cycle checkpoints activated by ICLs have received little attention. We have used the fission yeast, Schizosaccharomyces pombe, to elucidate the checkpoint responses to the ICL-inducing anticancer drugs nitrogen mustard and mitomycin C. First we confirmed that the repair pathways acting on ICLs in this yeast are similar to those in the main organisms studied to date (Escherichia coli, budding yeast, and mammalian cells), principally nucleotide excision repair and homologous recombination. We also identified and disrupted the S. pombe homologue of the Saccharomyces cerevisiae SNM1/PSO2 ICL repair gene and found that this activity is required for normal resistance to cross-linking agents, but not other forms of DNA damage. Survival and biochemical analysis indicated a key role for the “checkpoint Rad” family acting through the chk1-dependent DNA damage checkpoint in the ICL response. Rhp9-dependent phosphorylation of Chk1 correlates with G2 arrest following ICL induction. In cells able to bypass the G2 block, a second-cycle (S-phase) arrest was observed. Only a transient activation of the Cds1 DNA replication checkpoint factor occurs following ICL formation in wild-type cells, but this is increased and persists in G2 arrest-deficient mutants. This likely reflects the fraction of cells escaping the G2 damage checkpoint and arresting in the subsequent S phase due to ICL replication blocks. Disruption of cds1 confers increased resistance to ICLs, suggesting that this second-cycle S-phase arrest might be a lethal event.
Precision-Recall-Gain Curves: PR Analysis Done Right

Precision-Recall analysis abounds in applications of binary classification where true negatives do not add value and hence should not affect assessment of the classifier's performance. Perhaps inspired by the many advantages of receiver operating characteristic (ROC) curves and the area under such curves for accuracy-based performance assessment, many researchers have taken to report Precision-Recall (PR) curves and associated areas as performance metric. We demonstrate in this paper that this practice is fraught with difficulties, mainly because of incoherent scale assumptions - e.g., the area under a PR curve takes the arithmetic mean of precision values whereas the Fβ score applies the harmonic mean. We show how to fix this by plotting PR curves in a different coordinate system, and demonstrate that the new Precision-Recall-Gain curves inherit all key advantages of ROC curves. In particular, the area under Precision-Recall-Gain curves conveys an expected F1 score on a harmonic scale, and the convex hull of a Precision-Recall-Gain curve allows us to calibrate the classifier's scores so as to determine, for each operating point on the convex hull, the interval of β values for which the point optimises Fβ. We demonstrate experimentally that the area under traditional PR curves can easily favour models with lower expected F1 score than others, and so the use of Precision-Recall-Gain curves will result in better model selection.
Image coding based on a fractal theory of iterated contractive image transformations

The author proposes an independent and novel approach to image coding, based on a fractal theory of iterated transformations. The main characteristics of this approach are that (i) it relies on the assumption that image redundancy can be efficiently exploited through self-transformability on a block-wise basis, and (ii) it approximates an original image by a fractal image. The author refers to the approach as fractal block coding. The coding-decoding system is based on the construction, for an original image to encode, of a specific image transformation-a fractal code-which, when iterated on any initial image, produces a sequence of images that converges to a fractal approximation of the original. It is shown how to design such a system for the coding of monochrome digital images at rates in the range of 0.5-1.0 b/pixel. The fractal block coder has performance comparable to state-of-the-art vector quantizers.
Heightened immune response to autocitrullinated Porphyromonas gingivalis peptidylarginine deiminase: a potential mechanism for breaching immunologic tolerance in rheumatoid arthritis

Background Rheumatoid arthritis (RA) is characterised by autoimmunity to citrullinated proteins, and there is increasing epidemiologic evidence linking Porphyromonas gingivalis to RA. P gingivalis is apparently unique among periodontal pathogens in possessing a citrullinating enzyme, peptidylarginine deiminase (PPAD) with the potential to generate antigens driving the autoimmune response. Objectives To examine the immune response to PPAD in patients with RA, individuals with periodontitis (PD) and controls (without arthritis), confirm PPAD autocitrullination and identify the modified arginine residues. Methods PPAD and an inactivated mutant (C351A) were cloned and expressed and autocitrullination of both examined by immunoblotting and mass spectrometry. ELISAs using PPAD, C351A and another P gingivalis protein arginine gingipain (RgpB) were developed and antibody reactivities examined in patients with RA (n=80), individuals with PD (n=44) and controls (n=82). Results Recombinant PPAD was a potent citrullinating enzyme. Antibodies to PPAD, but not to Rgp, were elevated in the RA sera (median 122 U/ml) compared with controls (median 70 U/ml; p<0.05) and PD (median 60 U/ml; p<0.01). Specificity of the anti-peptidyl citrullinated PPAD response was confirmed by the reaction of RA sera with multiple epitopes tested with synthetic citrullinated peptides spanning the PPAD molecule. The elevated antibody response to PPAD was abolished in RA sera if the C351A mutant was used on ELISA. Conclusions The peptidyl citrulline-specific immune response to PPAD supports the hypothesis that, as a bacterial protein, it might break tolerance in RA, and could be a target for therapy.
Computing Optimal Subsets

Various tasks in decision making and decision support require selecting a preferred subset of items from a given set of feasible items. Recent work in this area considered methods for specifying such preferences based on the attribute values of individual elements within the set. Of these, the approach of (Brafman et al. 2006) appears to be the most general. In this paper, we consider the problem of computing an optimal subset given such a specification. The problem is shown to be NP-hard in the general case, necessitating heuristic search methods. We consider two algorithm classes for this problem: direct set construction, and implicit enumeration as solutions to appropriate CSPs. New algorithms are presented in each class and compared empirically against previous results.
Sunbed Use Prevalence and Associated Skin Health Habits: Results of a Representative, Population-Based Survey among Austrian Residents

Recreational sunbed use accounts for the main non-solar source of exposure to ultraviolet radiation in fair-skinned Western populations. Indoor tanning is associated with increased risks for acute and chronic dermatological diseases. The current community-based study assessed the one-year prevalence of sunbed use and associated skin health habits among a representative, gender-balanced sample of 1500 Austrian citizens. Overall one-year prevalence of sunbed use was 8.9% (95% confidence interval (CI) 7.5%–10.4%), with slightly higher prevalence in females (9.2%, 95% CI 7.3%–11.2%) compared to males (8.6%, 95% CI 6.7%–10.6%). Factors predicting sunbed use were younger age (by trend decreasing with older age), place of living, smoking, skin type (by trend increasing with darker skin), sun exposure, motives to tan, and use of UV-free tanning products. Despite media campaigns on the harmful effects of excessive sunlight and sunbed exposure, we found a high prevalence of self-reported sunbed use among Austrian citizens. From a Public (Skin) Health perspective, the current research extends the understanding of prevailing leisure time skin health habits in adding data on prevalence of sunbed use in the general Austrian population.