Miracle-dz/UniFAR-FTUs huggingface dataset:
Weathering a Dynamic Seascape: Influences of Wind and Rain on a Seabird’s Year-Round Activity Budgets

How animals respond to varying environmental conditions is fundamental to ecology and is a question that has gained impetus due to mounting evidence indicating negative effects of global change on biodiversity. Behavioural plasticity is one mechanism that enables individuals and species to deal with environmental changes, yet for many taxa information on behavioural parameters and their capacity to change are lacking or restricted to certain periods within the annual cycle. This is particularly true for seabirds where year-round behavioural information is intrinsically challenging to acquire due to their reliance on the marine environment where they are difficult to study. Using data from over 13,000 foraging trips throughout the annual cycle, acquired using new-generation automated VHF technology, we described sex-specific, year-round activity budgets in Cape gannets. Using these data we investigated the role of weather (wind and rain) on foraging activity and time allocated to nest attendance. Foraging activity was clearly influenced by wind speed, wind direction and rainfall during and outside the breeding season. Generally, strong wind conditions throughout the year resulted in relatively short foraging trips. Birds spent longer periods foraging when rainfall was moderate. Nest attendance, which was sex-specific outside of the breeding season, was also influenced by meteorological conditions. Large amounts of rainfall (> 2.5 mm per hour) and strong winds (> 13 m s-1) resulted in gannets spending shorter amounts of time at their nests. We discuss these findings in terms of life history strategies and implications for the use of seabirds as bio-indicators.
Niche Partitioning of Feather Mites within a Seabird Host, Calonectris borealis

According to classic niche theory, species can coexist in heterogeneous environments by reducing interspecific competition via niche partitioning, e.g. trophic or spatial partitioning. However, support for the role of competition on niche partitioning remains controversial. Here, we tested for spatial and trophic partitioning in feather mites, a diverse and abundant group of arthropods. We focused on the two dominant mite species, Microspalax brevipes and Zachvatkinia ovata, inhabiting flight feathers of the Cory’s shearwater, Calonectris borealis. We performed mite counts across and within primary and tail feathers on free-living shearwaters breeding on an oceanic island (Gran Canaria, Canary Islands). We then investigated trophic relationships between the two mite species and the host using stable isotope analyses of carbon and nitrogen on mite tissues and potential host food sources. The distribution of the two mite species showed clear spatial segregation among feathers; M. brevipes showed high preference for the central wing primary feathers, whereas Z. ovata was restricted to the two outermost primaries. Morphological differences between M. brevipes and Z. ovata support an adaptive basis for the spatial segregation of the two mite species. However, the two mites overlap in some central primaries and statistical modeling showed that Z. ovata tends to outcompete M. brevipes. Isotopic analyses indicated similar isotopic values for the two mite species and a strong correlation in carbon signatures between mites inhabiting the same individual host suggesting that diet is mainly based on shared host-associated resources. Among the four candidate tissues examined (blood, feather remains, skin remains and preen gland oil), we conclude that the diet is most likely dominated by preen gland oil, while the contribution of exogenous material to mite diets is less marked. Our results indicate that ongoing competition for space and resources plays a central role in structuring feather mite communities. They also illustrate that symbiotic infracommunities are excellent model systems to study trophic ecology, and can improve our understanding of mechanisms of niche differentiation and species coexistence.
Arithmetic Memory Is Modality Specific

In regards to numerical cognition and working memory, it is an open question as to whether numbers are stored into and retrieved from a central abstract representation or from separate notation-specific representations. This study seeks to help answer this by utilizing the numeral modality effect (NME) in three experiments to explore how numbers are processed by the human brain. The participants were presented with numbers (1–9) as either Arabic digits or written number words (Arabic digits and dot matrices in Experiment 2) at the first (S1) and second (S2) stimuli. The participant’s task was to add the first two stimuli together and verify whether the answer (S3), presented simultaneously with S2, was correct. We hypothesized that if reaction time (RT) at S2/S3 depends on the modality of S1 then numbers are retrieved from modality specific memory stores. Indeed, RT depended on the modality of S1 whenever S2 was an Arabic digit which argues against the concept of numbers being stored and retrieved from a central, abstract representation.
Synthesis of Luminescent Graphene Quantum Dots with High Quantum Yield and Their Toxicity Study

High fluorescence quantum yield graphene quantum dots (GQDs) have showed up as a new generation for bioimaging. In this work, luminescent GQDs were prepared by an ameliorative photo-Fenton reaction and a subsequent hydrothermal process using graphene oxide sheets as the precursor. The as-prepared GQDs were nanomaterials with size ranging from 2.3 to 6.4 nm and emitted intense green luminescence in water. The fluorescence quantum yield was as high as 24.6% (excited at 340 nm) and the fluorescence was strongest at pH 7. Moreover, the influences of low-concentration (12.5, 25 μg/mL) GQDs on the morphology, viability, membrane integrity, internal cellular reactive oxygen species level and mortality of HeLa cells were relatively weak, and the in vitro imaging demonstrated GQDs were mainly in the cytoplasm region. More strikingly, zebrafish embryos were co-cultured with GQDs for in vivo imaging, and the results of heart rate test showed the intake of small amounts of GQDs brought little harm to the cardiovascular of zebrafish. GQDs with high quantum yield and strong photoluminescence show good biocompatibility, thus they show good promising for cell imaging, biolabeling and other biomedical applications.
Some facts on Permanents in Finite Characteristics

The polynomial-time computability of the permanent over fields of characteristic 3 for k-semi-unitary matrices (i.e. square matrices such that the differences of their Gram matrices and the corresponding identity matrices are of rank k) in the case k = 0 or k = 1 and its #3P-completeness for any k > 1 (Ref. 9) is a result that essentially widens our understanding of the computational complexity boundaries for the permanent modulo 3. Now we extend this result to study more closely the case k > 1 regarding the (n-k)x(n-k)-sub-permanents (or permanent-minors) of a unitary nxn-matrix and their possible relations, because an (n-k)x(n-k)-submatrix of a unitary nxn-matrix is generically a k-semi-unitary (n-k)x(n-k)-matrix. The following paper offers a way to receive a variety of such equations of different sorts, in the meantime extending this direction of research to reviewing all the set of polynomial-time permanent-preserving reductions and equations for the sub-permanents of a generic matrix they might yield, including a number of generalizations and formulae (valid in an arbitrary prime characteristic) analogical to the classical identities relating the minors of a matrix and its inverse. Moreover, the second chapter also deals with the Hamiltonian cycle polynomial in characteristic 2 that surprisingly possesses quite a number of properties very similar to the corresponding ones of the permanent in characteristic 3, while in the field GF(2) it obtains even more amazing features. Besides, the third chapter is devoted to the computational complexity issues of the permanent and some related functions on a variety of Cauchy matrices and their certain generalizations, including constructing a polynomial-time algorithm (based on them) for the permanent of an arbitrary matrix in characteristic 5 and conjecturing the existence of a similar scheme in characteristic 3.
Trough Concentrations of Vancomycin in Patients Undergoing Extracorporeal Membrane Oxygenation

To investigate the appropriateness of the current vancomycin dosing strategy in adult patients with extracorporeal membrane oxygenation (ECMO), between March 2013 and November 2013, patients who were treated with vancomycin while on ECMO were enrolled. Control group consisted of 60 patients on vancomycin without ECMO, stayed in medical intensive care unit during the same study period and with the same exclusion criteria. Early trough levels were obtained within the fourth dosing, and maintenance levels were measured at steady state. A total of 20 patients were included in the analysis in ECMO group. Sixteen patients received an initial intravenous dose of 1.0 g vancomycin followed by 1.0 g every 12 hours. The non-steady state trough level of vancomycin after starting administration was subtherapeutic in 19 patients (95.00%) in ECMO group as compared with 40 patients (66.67%) in the control group (p = 0.013). Vancomycin clearance was 1.27±0.51 mL/min/kg, vancomycin clearance/creatinine clearance ratio was 0.90 ± 0.37, and elimination rate constant was 0.12 ± 0.04 h-1. Vancomycin dosingfrequency and total daily dose were significantly increased after clinical pharmacokinetic services of the pharmacist based on calculated pharmacokinetic parameters (from 2.10 ± 0.72 to 2.90 ± 0.97times/day, p = 0.002 and from 32.54 ± 8.43 to 42.24 ± 14.62mg/kg, p = 0.014) in ECMO group in contrast with those (from 2.11 ± 0.69 to 2.37 ± 0.86 times/day, p = 0.071 and from 33.91 ± 11.85 to 31.61 ± 17.50 mg/kg, p = 0.350) in the control group.Although the elimination rate for vancomycin was similar with population parameter of non ECMO patients, the current dosing strategy of our institution for vancomycinin our ICU was not sufficient to achieve the target trough in the initial period in most patients receiving ECMO.
Bimetallic Thermal Resists for Photomask, Micromachining and Microfabrication

Photoresists and photomasks are two of the most critical materials in microfabrication and micromachining industries. As the shift towards shorter wavelength exposure continues, conventional organic photoresists and chromelquartz photomasks start to encounter problems. This thesis investigates and presents an alternative to organic photoresists and chromium photomasks which overcomes their intrinsic problems. A bimetallic thin film, such as BilIn and SnIIn, creates an inorganic thermal resist with many interesting properties. Both experiments and simulations demonstrate that this class of thermal resists can be converted by laser exposure with wavelengths from 213 nm to 830 nm, showing wavelength invariance. Simulations of the projected wavelength response show that BiIIn thermal resist works down to the 1 nm X-ray range. Exposed bimetallic thermal resists can be developed in two different acid solutions with excellent selectivity. A standard etch (RCA2) can strip the unexposed bimetallic film when photoresist rework is needed. Exposed bimetallic films are resistant to Si anisotropic wet etching and fluorine, O2 and chlorine plasma etching. The Bi/In thermal resist is the first reported resist that works for both wet chemical anisotropic Si etching and dry plasma etching. All these features make the bimetallic film a complete thermal resist. Another very important property of bimetallic thin films is the largest change in the optical absorption ever reported in the literature (3.0 OD before exposure and 0.22 OD after exposure, 365 nm), with the exposed areas becoming nearly transparent. The transmission of the exposed films depends on the laser writing power. Thus, BilIn resist and its class can be utilized as a direct-write photomask material for both binary and grayscale photomasks. Binary photomasks and grayscale photomasks were successfully created. 2D and 3D structures were successfully generated in Shipley organic photoresists using a mercury lamp mask aligner with exposure conditions identical to those for conventional chrome masks. Material analyses show that the transformation after laser exposure of bimetallic thermal resists is an oxidation process. Laser-converted BilIn and S n h oxides have a structure similar to that of indium tin oxide films. 1 1 1
Nonisolated High Step-Up DC–DC Converters Adopting Switched-Capacitor Cell

In a photovoltaic (PV)- or fuel-cell-based grid-connected power system, a high step-up dc-dc converter is required to boost the low voltage of a PV or fuel cell to a relatively high bus voltage for the downstream dc-ac grid-connected inverter. To integrate the advantages of the high voltage gain of a switched-capacitor (SC) converter and excellent output regulation of a switching-mode dc-dc converter, a method of combining the two types of converters is proposed in this paper. The basic idea is that when the switch is turned on, the inductor is charged, and the capacitors are connected in series to supply the load, and when the switch is turned off, the inductor releases energy to charge multiple capacitors in parallel, whose voltages are controlled by a pulsewidth modulation technique. Thus, a high voltage gain of the dc-dc converter can be obtained with good regulation. Based on this principle, a series of new topologies are derived, and the operating principles and voltage gains of the proposed converters are analyzed. Finally, the design of the proposed converter is given, and the experiment results are provided to verify the theoretical analysis.
Nature and Age of Neighbours Matter: Interspecific Associations among Tree Species Exist and Vary across Life Stages in Tropical Forests

Detailed information about interspecific spatial associations among tropical tree species is scarce, and hence the ecological importance of those associations may have been underestimated. However, they can play a role in community assembly and species diversity maintenance. This study investigated the spatial dependence between pairs of species. First, the spatial associations (spatial attraction and spatial repulsion) that arose between species were examined. Second, different sizes of trees were considered in order to evaluate whether the spatial relationships between species are constant or vary during the lifetime of individuals. Third, the consistency of those spatial associations with the species-habitat associations found in previous studies was assessed. Two different tropical ecosystems were investigated: a montane cloud forest and a lowland moist forest. The results showed that spatial associations among species exist, and these vary among life stages and species. The rarity of negative spatial interactions suggested that exclusive competition was not common in the studied forests. On the other hand, positive interactions were common, and the results of this study strongly suggested that habitat associations were not the only cause of spatial attraction among species. If this is true, habitat associations and density dependence are not the only mechanisms that explain species distribution and diversity; other ecological interactions, such as facilitation among species, may also play a role. These spatial associations could be important in the assembly of tropical tree communities and forest succession, and should be taken into account in future studies.
Orchid Species Richness along Elevational and Environmental Gradients in Yunnan, China

The family Orchidaceae is not only one of the most diverse families of flowering plants, but also one of the most endangered plant taxa. Therefore, understanding how its species richness varies along geographical and environmental gradients is essential for conservation efforts. However, such knowledge is rarely available, especially on a large scale. We used a database extracted from herbarium records to investigate the relationships between orchid species richness and elevation, and to examine how elevational diversity in Yunnan Province, China, might be explained by mid-domain effect (MDE), species–area relationship (SAR), water–energy dynamics (WED), Rapoport’s Rule, and climatic variables. This particular location was selected because it is one of the primary centers of distribution for orchids. We recorded 691 species that span 127 genera and account for 88.59% of all confirmed orchid species in Yunnan. Species richness, estimated at 200-m intervals along a slope, was closely correlated with elevation, peaking at 1395 to 1723 m. The elevational pattern of orchid richness was considerably shaped by MDE, SAR, WED, and climate. Among those four predictors, climate was the strongest while MDE was the weakest for predicting the elevational pattern of orchid richness. Species richness showed parabolic responses to mean annual temperature (MAT) and mean annual precipitation (MAP), with maximum richness values recorded at 13.7 to 17.7°C for MAT and 1237 to 1414 mm for MAP. Rapoport’s Rule also helped to explain the elevational pattern of species richness in Yunnan, but those influences were not entirely uniform across all methods. These results suggested that the elevational pattern of orchid species richness in Yunnan is collectively shaped by several mechanisms related to geometric constraints, size of the land area, and environments. Because of the dominant role of climate in determining orchid richness, our findings may contribute to a better understanding of the potential effects of climate change on orchid diversity, and the development of conservation strategies for orchids.
Covert Communications with a Full-Duplex Receiver over Wireless Fading Channels

In this work, we propose a covert communication scheme where the transmitter attempts to hide its transmission to a full-duplex receiver, from a warden that is to detect this covert transmission using a radiometer. Specifically, we first derive the detection error rate at the warden, based on which the optimal detection threshold for its radiometer is analytically determined and its expected detection error rate over wireless fading channels is achieved in a closed-form expression. Our analysis indicates that the artificial noise deliberately produced by the receiver with a random transmit power, although causes self-interference, offers the capability of achieving a positive effective covert rate for any transmit power (can be infinity) subject to any given covertness requirement on the expected detection error rate. This work is the first study on the use of the full- duplex receiver with controlled artificial noise for achieving covert communications and invites further investigation in this regard.
Probabilistic Tensor Canonical Polyadic Decomposition With Orthogonal Factors

Tensor canonical polyadic decomposition (CPD), which recovers the latent factor matrices from multidimensional data, is an important tool in signal processing. In many applications, some of the factor matrices are known to have orthogonality structure, and this information can be exploited to improve the accuracy of latent factors recovery. However, existing methods for CPD with orthogonal factors all require the knowledge of tensor rank, which is difficult to acquire, and have no mechanism to handle outliers in measurements. To overcome these disadvantages, in this paper, a novel tensor CPD algorithm based on the probabilistic inference framework is devised. In particular, the problem of tensor CPD with orthogonal factors is interpreted using a probabilistic model, based on which an inference algorithm is proposed that alternatively estimates the factor matrices, recovers the tensor rank, and mitigates the outliers. Simulation results using synthetic data and real-world applications are presented to illustrate the excellent performance of the proposed algorithm in terms of accuracy and robustness.
Environmental Conditions Determine the Course and Outcome of Phytoplankton Chytridiomycosis

Chytrid fungi are highly potent parasites of phytoplankton. They are thought to force phytoplankton organisms into an evolutionary arms race with high population diversity as the outcome. The underlying selection regime is known as Red Queen dynamics. However, our study suggests a more complex picture for chytrid parasitism in the cyanobacterium Planktothrix. Laboratory experiments identified a “cold thermal refuge”, inside which Planktothrix can grow without chytrid infection. A field study in two Norwegian lakes underlined the ecological significance of this finding. The study utilized sediment DNA as a biological archive in combination with existing monitoring data. In one lake, temperature and light conditions forced Planktothrix outside the thermal refuge for most of the growing season. This probably resulted in Red Queen dynamics as suggested by a high parasitic pressure exerted by chytrids, an increase in Planktothrix genotype diversity over time, and a correlation between Planktothrix genotype diversity and duration of bloom events. In the second lake, a colder climate allowed Planktothrix to largely stay inside the thermal refuge. The parasitic pressure exerted by chytrids and Planktothrix genotype diversity remained low, indicating that Planktothrix successfully evaded the Red Queen dynamics. Episodic Planktothrix blooms were observed during spring and autumn circulation, in the metalimnion or under the ice. Interestingly, both lakes were dominated by the same or related Planktothrix genotypes. Taken together, our data suggest that, depending on environmental conditions, chytrid parasitism can impose distinct selection regimes on conspecific phytoplankton populations with similar genotype composition, causing these populations to behave and perhaps to evolve differently.
Levels and Patterns of Genetic Diversity and Population Structure in Domestic Rabbits

Over thousands of years humans changed the genetic and phenotypic composition of several organisms and in the process transformed wild species into domesticated forms. From this close association, domestic animals emerged as important models in biomedical and fundamental research, in addition to their intrinsic economical and cultural value. The domestic rabbit is no exception but few studies have investigated the impact of domestication on its genetic variability. In order to study patterns of genetic structure in domestic rabbits and to quantify the genetic diversity lost with the domestication process, we genotyped 45 microsatellites for 471 individuals belonging to 16 breeds and 13 wild localities. We found that both the initial domestication and the subsequent process of breed formation, when averaged across breeds, culminated in losses of ~20% of genetic diversity present in the ancestral wild population and domestic rabbits as a whole, respectively. Despite the short time elapsed since breed diversification we uncovered a well-defined structure in domestic rabbits where the FST between breeds was 22%. However, we failed to detect deeper levels of structure, probably consequence of a recent and single geographic origin of domestication together with a non-bifurcating process of breed formation, which were often derived from crosses between two or more breeds. Finally, we found evidence for intrabreed stratification that is associated with demographic and selective causes such as formation of strains, colour morphs within the same breed, or country/breeder of origin. These additional layers of population structure within breeds should be taken into account in future mapping studies.