Miracle-dz/UniFAR-FTUs huggingface dataset:
The use of ground EM systems to accurately assess salt store and help define land management options for salinity management

The ability to rapidly and accurately determine the vertical and spatial distribution of soil salinity at a farm or paddock scale is extremely important for land managers and researchers involved in managing land salination. Knowledge of current (shallow) soil salinity levels is required to make informed short-term management decisions as to what pasture, crop or tree species will be the most productive, or should be grown to minimise surface soil salination. Prognosis of future (deeper) salinity development is required for longer-term management. Hence, characteristics of regolith salt store and groundwater depth are essential information. The vertical distribution of salt throughout the regolith is also very important at the regional scale and for calibrating larger-scale airborne EM mapping systems. Accurate site assessment using soil sampling and laboratory analysis is time consuming, expensive and can be highly variable because of large spatial variability compared with sample size and practical sampling density. Clearly, an accurate and efficient system of salinity mapping using portable ground-based geophysical instruments is required. The Geonics EM38 and EM31 instruments have been routinely used to map soil salinity. Recently, automated ground-based data acquisition and real-time mapping systems have been developed. In the past, most use has been made of the instruments’ relative readings. However, continued calibration in variable terrain will allow for more practical and absolute use to be made of readings. The Geonics EM34 and EM39 instruments have also been used to determine salinity profiles to depth; however, usually in experimental situations. They have the potential to replace deep drilling (EM34) and drill-sample assay (EM39), and have been used to evaluate airborne EM systems. We have reviewed the use of the four Geonics instruments for salinity investigations and present over thirty calibrations with soil salinity from various terrains in southwestern Australia and compare them with calibrations from eastern Australia. We found that the instruments are reliable and the information they generate is reproducible. In all situations studied, salinity was the dominant contributor to EM response. However, soil type, moisture and temperature can have secondary contributions, which may be more important when EM is used to assess and predict plant response to salinity. We show that for practical purposes ground-based EM can be confidently used in salinity mapping.
Re-evaluation of the Well Permeameter as a Field Method for Measuring Hydraulic Conductivity

Improved theory of steady outflow of water ponded to constant depth in holes drilled in unsaturated soil is used to re-evaluate the well permeameter method for measurement of in situ hydraulic conductivity, Kg. In particular, theory predicts that neglect of unsaturated flow into soil surrounding the saturated region around a borehole may lead to serious overestimation of K0, especially when using small holes in soils with high capillarity, i.e. the capillarity factor a = 0.1-1 m-l. Field studies on 12 soils gave a values from 6 to 35 m-l, resulting in theoretical overestimates of K0 by 10-40%, for boreholes >0.3 m deep and >0.03 m radius. Comparison of results obtained by measurements with this method for four soils, however, gave permeameter values of K0 which were approximately 50% of those obtained with the augerhole or the core method. Overestimation of K0 due to neglect of capillarity was, in all cases, more than offset by reduction in K0 due to pore closure around a hole during drilling and infiltration.
Comparison of scaling behavior between fuzzy c-means based classifier with many parameters and LibSVM

This paper reports the scaling behavior of the fuzzy c-means based classifier (FCMC) with many parameters. FCMC is a classifier based on clustering approaches. The classification accuracy on test sets (i.e., the generalization capability) is not necessarily improved by increasing the number of clusters. Especially when the number of training samples is relatively small, not only the classification boundary over-fits the data, but also covariance matrices and cluster centers are computed incorrectly, since the number of samples in each cluster becomes smaller. Hence, the test set accuracy deteriorates. The performance of FCMC with two clusters in each class and the number of training samples less than 1000, was reported in the literature. This paper reports the scaling behavior of FCMC by testing with variously-sized training samples. The number of clusters of FCMC is increased up to eight. The number of clusters used in this paper is not very large but the number of parameters is relatively large. So, the parameters are optimized to training sets. LibSVM is one of the widely known state of the art tools for support vector machines (SVM). The test set accuracy, training time and testing time (i.e., the detection time) of FCMC are compared with LibSVM by varying the size of training sets. FCMC shows a good generalization capability, though the parameters are optimized to training sets. When the number of training samples is increased by 10 times, the training time of FCMC increases by 10 times, but that of LibSVM increases by a factor of 100. The testing time is also much shorter than LibSVM when the size of the training set is large.
Lung bioavailability of generic and innovator salbutamol metered dose inhalers.

BACKGROUND: The aim of this study was to determine whether significant differences exist in lung bioavailability between generic (Salamol, Salbulin) and innovator (Ventolin) formulations of inhaled salbutamol given by metered dose inhalers. METHODS: Ten healthy volunteers of mean age 20.5 years with a forced expiratory volume in one second (FEV1) of 112.1% predicted were studied in a randomised double blind single dosing crossover study. Salbutamol, 1200 micrograms, was given with mouth rinsing and lung bioavailability was assessed by measuring plasma salbutamol levels and urine excretion of salbutamol. RESULTS: No differences were seen between innovator and generic salbutamol metered dose inhalers in plasma salbutamol levels, urinary salbutamol excretion, or extrapulmonary beta 2 activity. The maximum plasma salbutamol concentration (mean Cmax) and time to maximum concentration (median Tmax) were: Ventolin (2.93 ng/ml, 10 minutes), Salbulin (3.01 ng/ml, 10 minutes), Salamol (3.33 ng/ml, 10 minutes). The geometric mean ratio and 95% confidence interval for Cmax were: Salbulin/Ventolin 1.02 (0.69 to 1.41) and Salamol/Ventolin 1.13 (0.94 to 1.35). CONCLUSIONS: No differences are apparent between the two generic and innovator formulations of salbutamol metered dose inhaler in terms of lung bioavailability.
Changes in dynamic shear moduli of carbonate rocks with fluid substitution

To assess saturation effects on acoustic properties in carbonates, we measure ultrasonic velocity on 38 limestone samples whose porosity ranges from 5% to 30% under dry and water-saturated conditions. Complete saturation of the pore space with water causes an increase and decrease in compressional- and shear-wave velocity as well as significant changes in the shear moduli. Compressional velocities of most water-saturated samples are up to 500 m∕s higher than the velocities of the dry samples. Some show no change, and a few even show a decrease in velocity. Shear-wave velocity ( VS ) generally decreases, but nine samples show an increase of up to 230 m∕s . Water saturation decreases the shear modulus by up to 2 GPa in some samples and increases it by up to 3 GPa in others. The average increase in the shear modulus with water saturation is 1.23 GPa ; the average decrease is 0.75GPa . The VP ∕ VS ratio shows an overall increase with water saturation. In particular, rocks displaying shear weakening have disti.
A new paleobathymetric interpretation of the middle miocene grand bay formation of Carriacou (Grenadines, lesser antilles)

The ichnology of the Antillean region remains largely unstudied. A large specimen of Zoophycos isp. is reported from the Middle Miocene Grand Bay Formation of Carriacou, Grenadines, Lesser Antilles, possibly the first member of this ichnotaxon to be documented from the region. The Grand Bay Formation has previously been interpreted as a shallower‐water unit, but the presence of Zoophycos, with other, supporting evidence, suggests that it is more likely to have been deposited under deeper‐water conditions, probably on the outer island shelf or deeper.
p53 activates the PANK1/miRNA-107 gene leading to downregulation of CDK6 and p130 cell cycle proteins

The tumor suppressor p53 is a central regulator of cell-cycle arrest and apoptosis by acting as a transcription factor to regulate numerous genes. We identified all human p53-regulated mRNAs by microarray analyses and searched for protein-coding genes which contain intronic miRNAs. Among others, this analysis yielded the panthothenate kinase 1 (PANK1) gene and its intronic miRNA-107. We showed that miRNA-107 and PANK1 are coregulated by p53 in different cell systems. The PANK1 protein, which catalyzes the rate-limiting step of coenzyme A biosynthesis, is also upregulated by p53. We observed that p53 directly activates PANK1 and miRNA-107 transcription through a binding site in the PANK1 promoter. Furthermore, p53 is recruited to the PANK1 promoter after DNA damage. In order to get more insight into miRNA-107 function we investigated its potential target genes. Cell-cycle regulators are significantly enriched among predicted miRNA-107 targets. We found miRNA-107-dependent regulation of two important regulators of G1/S progression, CDK6 and the RB-related 2 gene RBL2 (p130). CDK6 and p130 proteins are downregulated upon miRNA-107 expression. Our results uncover a novel miRNA-dependent signaling pathway which leads to downregulation of cell cycle proteins in the absence of transcriptional repression.
C^2MSNet: A Novel Approach for Single Image Haze Removal

Degradation of image quality due to the presence of haze is a very common phenomenon. Existing DehazeNet [3], MSCNN [11] tackled the drawbacks of hand crafted haze relevant features. However, these methods have the problem of color distortion in gloomy (poor illumination) environment. In this paper, a cardinal (red, green and blue) color fusion network for single image haze removal is proposed. In first stage, network fusses color information present in hazy images and generates multi-channel depth maps. The second stage estimates the scene transmission map from generated dark channels using multi channel multi scale convolutional neural network (McMs-CNN) to recover the original scene. To train the proposed network, we have used two standard datasets namely: ImageNet [5] and D-HAZY [1]. Performance evaluation of the proposed approach has been carried out using structural similarity index (SSIM), mean square error (MSE) and peak signal to noise ratio (PSNR). Performance analysis shows that the proposed approach outperforms the existing state-of-the-art methods for single image dehazing.
P–T conditions of decompression of the Limpopo high‐grade terrane: record from shear zones

The Southern Marginal Zone of the late Archean Limpopo Belt of southern Africa is an example of a high‐grade gneiss terrane in which both upper and lower crustal deformational processes can be studied. This marginal zone consists of large thrust sheets of complexly folded low‐strain gneisses, bound by an imbricate system of kilometre‐wide deep crustal shear zones characterized by the presence of high‐strain gneisses (‘primary straight gneisses’). These shear zones developed during the decompression stage of this high‐grade terrane. Low‐ and high‐strain gneisses both contain similar reaction textures that formed under different kinematic conditions during decompression. Evidence for the early M1/D1 metamorphic phase (> 2690 Ma) is rarely preserved in low‐strain gneisses as a uniform orientation of relict Al‐rich orthopyroxene in the matrix and quartz and plagioclase inclusions in the cores of early (M1) Mg‐rich garnet porphyroblasts. This rare fabric formed at > 820 °C and > 7.5 kbar. The retrograde M2/D2 metamorphic fabric (2630–2670 Ma) is well developed in high‐strain gneisses from deep crustal shear zones and is microscopically recognized by the presence of reaction textures that formed synkinematically during shear deformation: M2 sigmoid‐shaped reaction textures with oriented cordierite–orthopyroxene symplectites formed after the early M1 Mg‐rich garnet porphyroblasts, and syn‐decompression M2 pencil‐shaped garnet with oriented inclusions of sillimanite and quartz formed after cordierite under conditions of near‐isobaric cooling at 750–630 °C and 6–5 kbar. The symplectites and pencil‐shaped garnet are oriented parallel to the shear fabric and in the stretching direction. Low‐strain gneisses from thrust sheets show similar M2 decompression cooling and near‐isobaric cooling reaction textures that formed within the same P–T range, but under low‐strain conditions, as shown by their pseudo‐idioblastic shapes that reflect the contours of completely replaced M1 garnet and randomly oriented cordierite–orthopyroxene symplectites. The presence of similar reaction textures reflecting low‐strain conditions in gneisses from thrust sheets and high‐strain conditions in primary straight gneisses suggests that most of the strain during decompression was partitioned into the bounding shear zones. A younger M3/D3 mylonitic fabric (< 2637 Ma) in unhydrated mylonites is characterized by brittle deformation of garnet porphyroclasts and ductile deformation of the quartz–plagioclase–biotite matrix developed at < 600 °C, as the result of post‐decompression shearing under epidote–amphibolite facies conditions.
Temporal and Petrogenetic Constraints on Volcanic Accretionary Processes at 9-10 Degrees North East Pacific Rise

Volcanic accretion at the fast-spreading East Pacific Rise (EPR) occurs over a ~2-4 km wide neo-volcanic zone on either side of the axial summit trough (AST). Eruption ages are critical for understanding the distribution and timing of volcanic and magmatic activity. Uranium series nuclides are susceptible to fractionation by magmatic processes that occur beneath mid-ocean ridges, and the half-lives of 22 6Ra (1.6 kyrs) and 23Th (75 kyrs) make them ideally suited for determining eruption ages and placing constraints on eruption frequency and temporal changes in magma chemistry. Accordingly, major and trace element, and long-lived radiogenic and 2 8 U-2 Th-226Ra isotope compositions were measured in basalts from 9'-10 N EPR to determine eruption ages and to place temporal constraints on volcanic and magmatic processes. At 9030'N EPR, 238U-2 Th-2 26Ra compositions indicate that trace elementally and isotopically enriched mid-ocean ridge basalt (MORB) collected off-axis erupted >8 ka and that E-MORB magmatism is interspersed with normal, depleted MORB magmatism. Lava ages are consistent with eruption from the AST and flow down the ridge flanks, which is in contrast to previous studies that suggested E-MORB erupted from off-axis vents. At 9'50'N EPR, discrete eruptive units are distinguished by high precision 238U, 32 Th, and 226Ra sample concentrations, but because the resolution of the "2 Th-226Ra model age dating technique is ~±1 kyrs, the surprisingly young ages of these lavas prohibit the construction of an explicit, time-constrained lava stratigraphy. Nonetheless, seven different flows identified within 0.8-2.0 km west of the AST imply greater frequency of flows to these distances than previously recognized. Model age dating of ferrobasalts, basaltic andesites, andesites, and dacites sampled from the east limb of the overlapping spreading center at 9'03'N EPR is difficult due to uncertainties in magma residence times. However, (22 6Ra/23 Th) disequilibria indicate recent basaltic volcanism (<<8 ka) up to -4 km off-axis. The axial graben at the rise crest sources the most recent volcanic activity and is the dominant location for eruption of high-silica magmas. Major element, trace element, 87Sr/86Sr, and (3 4U/238U) isotope compositions are consistent with the formation of dacite magmas by extensive crystallization, and 238U-2Fh-226 Ra systematics imply crustal residence times of -8 kyrs.
Deeper syntax for better semantic parsing

Syntax plays an important role in the task of predicting the semantic structure of a sentence. But syntactic phenomena such as alternations, control and raising tend to obfuscate the relation between syntax and semantics. In this paper we predict the semantic structure of a sentence using a deeper syntax than what is usually done. This deep syntactic representation abstracts away from purely syntactic phenomena and proposes a structural organization of the sentence that is closer to the semantic representation. Experiments conducted on a French corpus annotated with semantic frames showed that a semantic parser reaches better performances with such a deep syntactic input.
Modeling and inverting reactive stream tracers undergoing two‐site sorption and decay in the hyporheic zone

Performing stream‐tracer experiments is an accepted technique to assess transport characteristics of streams undergoing hyporheic exchange. Recently, combining conservative and reactive tracers, in which the latter presumably undergoes degradation exclusively within the hyporheic zone, has been suggested to study in‐stream transport, hyporheic exchange, and the metabolic activity of the hyporheic zone. The combined quantitative analysis to adequately describe such tests, however, has been missing. In this paper, we present mathematical methods to jointly analyze breakthrough curves of a conservative tracer (fluorescein), a linearly degrading tracer (resazurin), and its daughter compound (resorufin), which are synchronously introduced into the stream as pulses. In‐stream transport is described by the one‐dimensional advection‐dispersion equation, amended with a convolution term to account for transient storage within the hyporheic zone over a distribution of travel times, transformation of the reactive tracer in the hyporheic zone, and two‐site sorption of the parent and daughter compounds therein. We use a shape‐free approach of describing the hyporheic travel‐time distribution, overcoming the difficulty of identifying the best functional parameterization for transient storage. We discuss how this model can be fitted to the breakthrough curves of all three compounds and demonstrate the method by an application to a tracer test in the third‐order stream Goldersbach in Southern Germany. The entire river water passes once through the hyporheic zone over a travel distance of about 200 m with mean hyporheic residence times ranging between 16 and 23 min. We also observed a secondary peak in the transfer functions at about 1 h indicating a second hyporheic flow path. We could jointly fit the breakthrough curves of all compounds in three monitoring stations and evaluated the parameter uncertainty of the individual and joint fits by a method based on conditional realizations of the hyporheic travel‐time distribution. The approach gives insight into in‐stream transport, hyporheic exchange, metabolic activity, and river‐bed sorption of the stream under investigation.
EXPERIMENTS ON DENSITY AND TURBIDITY CURRENTS: II. UNIFORM FLOW OF DENSITY CURRENTS

The basic theory for the average velocity of uniform flow of a density current is now well established. The resistance at the bottom may be estimated from reasonable assumptions regarding the roughness of the bottom and the size of the current. The principal problem remaining is quantitative estimation of the resistance of the upper (fluid) interface. A review of the literature suggests that this resistance increases with increase in Froude number and decreases with increase in Reynolds number, and the writer's experiments support this hypothesis.As many turbidity currents are large scale and flow over low slopes of relatively small roughness it seems probable that both the bottom resistance and the resistance at the upper interface are small.
Representational plasticity in cortical area 3b paralleling tactual-motor skill acquisition in adult monkeys.

The representations of the surfaces of the hand in the primary somatosensory cortical field, area 3b, were reconstructed in detail in seven owl monkeys and two squirrel monkeys trained to pick up food pellets from five wells of different sizes. From an early clumsy performance in which several to many retrieval attempts were required for each successful pellet retrieval, the monkeys exhibited a gradual improvement in digital dexterity as shown by significant decreases in mean numbers of grasp attempts/successful retrieval and corresponding standard deviations (e.g. 5.8 +/- 4.5 and 4.8 +/- 3.1 respectively, for the smallest well) between the first and last training sessions. All monkeys commonly used alternative, specific retrieval strategies involving various combinations of digits for significant time epochs before developing a highly successful strategy, which, once achieved, was rapidly stereotyped. For example, the numbers of digit combinations used during the first five versus the last five training sessions decreased from 3.3 +/- 0.7 to 1.8 +/- 0.6 for the smallest well. In both owl and squirrel monkeys, as the behavior came to be stereotyped, monkeys reliably engaged limited surfaces of the glabrous tips of two digits (in eight monkeys), or of three digits (in one monkey) in the palpation and manipulation of these small pellets for their location, capture, and transportation to the mouth. In cortical area 3b, the magnification of representation of these differentially engaged glabrous fingertip surfaces was nearly 2x larger than for the corresponding surfaces of other hand digits, or for the contralateral cortical representations of the same digit surfaces on the opposite hand. In parallel, cutaneous receptive field for area 3b neurons representing crucial digital tip surfaces were less than half as large as were those representing the corresponding surfaces of control digits. Receptive field overlaps were smaller on the trained fingertips than on control fingers. Moreover, the proportion of small overlaps was greater for the trained digits (76 +/- 7%) than for the other digits of the same hand (49 +/- 5.4%). There was still a simple, single--but apparently topologically expanded--representation of these differentially engaged skin surfaces in these monkeys. Thus, with very limited manual exercise over a total period of a few hours of practice at a skill played out in brief daily sessions over a several week long training period, the representations of skin surfaces providing information crucial for successfully performing a small-object retrieval behavior appeared to be substantially remodeled in the most 'primary' of the SI somatosensory cortical fields, cortical area 3b. By that remodeling, behaviorally important skin surfaces were represented in a much finer representational grain than normal. Some implications of these findings for motor skill acquisition are discussed.