Miracle-dz/UniFAR-FTUs huggingface dataset:
REVIEW Amino Acid Metabolism and Atherosclerotic Cardiovascular Disease

Despite signi ﬁ cant advances in medical treatments and drug development, atherosclerotic cardiovascular disease (ASCVD) remains a leading cause of death worldwide. Dysregulated lipid metabolism is a well-established driver of ASCVD. Unfortunately, even with potent lipid-lowering therapies, ASCVD-related deaths have continued to increase over the past decade, highlighting an incomplete understanding of the underlying risk factors and mechanisms of ASCVD. Accumulating evidence over the past decades indicates a correlation between amino acids and disease state. This review explores the emerging role of amino acid metabolism in ASCVD, uncovering novel potential biomarkers, causative factors, and therapeutic targets. Speci ﬁ cally, the signi ﬁ cance of arginine and its related metabolites, homoarginine and polyamines, branched-chain amino acids, glycine, and aromatic amino acids, in ASCVD are discussed. These amino acids and their metabolites have been implicated in various processes characteristic of ASCVD, including impaired lipid metabolism, endothelial dysfunction, increased in-ﬂ ammatory response, and necrotic core development. Understanding the complex interplay between dysregulated amino acid metabolism and ASCVD provides new insights that may lead to the development of novel diagnostic and therapeutic approaches. Although further research is needed to uncover the precise mechanisms involved, it is evident that amino acid metabolism plays a role in ASCVD.
Boundary Refinement in Delaunay Mesh Generation Using Arbitrarily Ordered Vertex Insertion

In general, guaranteed-quality Delaunay meshing algorithms are difficult to parallelize because they require strictly ordered updates to the mesh boundary. We show that, by replacing the Delaunay cavity in the Bowyer-Watson algorithm with what we call the circumball intersection set, updates to the mesh can occur in any order, especially at the mesh boundary. To demonstrate this new idea, we describe a 2D constrained Delaunay meshing algorithm that does not enforce strict ordering of vertex insertions near the mesh boundary. We prove that the sequential version of this algorithm generates a mesh in which the circumradius to shortest edge ratio of every triangle is √ 2 or greater, as long as every angle interior to the polygonal input domain is at least 90. We briefly touch upon the parallel version of this algorithm, but we relegate a more complete discussion (with extension to 3D) to a forthcoming paper.
Isotropic Granularity-tunable gradients partition (IGGP) descriptors for human detection

This paper presents a new descriptor for human detection in still images. It is referred to as isotropic granularity-tunable gradients partition (IGGP), which is extended from granularity-tunable gradients partition (GGP) descriptors. The isotropic representation is achieved by aligning the features with different orientation channels according to their principal angles. The benefits of this extension are two folds: firstly, since the partitions’ sizes of all the orientation channels are equal, the noise introduce by the small partitions in the original GGP descriptors is eliminated and the performance can be essentially improved; secondly, the integral image based fast computation is applied and more than 20 times speedup has been achieved. In addition, we introduce a new human dataset HIMA. Unlike the previous available human datasets which are mainly captured on the street views for automobile safety or robotics, HIMA dataset is captured on the outdoor work fields for industry safety. The major challenges include: extreme light conditions, occlusion and strong noise. We benchmark several promising detection systems, providing an overview of state-of-the-art performance on the HIMA set. Experimental results show that the proposed method can yield very competitive results in both the detection speed and accuracy.
Insight into mental illness and child maltreatment risk among mothers with major psychiatric disorders.

OBJECTIVES This study examined the relationship between insight into mental illness and current child maltreatment risk among mothers who had a major psychiatric disorder and who had lost custody of a child because of abuse, neglect, or having placed the child at risk of harm. Specifically, a measure of insight was examined in relation to systematically observed parenting behaviors known to be correlated with past child maltreatment and in relation to a comprehensive clinical determination of risk. METHODS Forty-four mothers who had a major psychiatric disorder were independently rated for their insight into their illness, the quality of mother-child interaction, and the overall clinical risk of maltreatment. RESULTS Better insight into mental illness was associated with more sensitive mothering behavior and with lower assessed clinical risk of maltreatment. The association remained when mothers with current psychotic symptoms were excluded from the analyses. Better insight did not appear to be associated with past psychotic symptoms, maternal psychiatric diagnosis, or the mother's level of education. CONCLUSIONS Insight into mental illness may function as a protective factor that influences the risk of child maltreatment in mothers with mental illness. Measures of insight could be usefully incorporated into comprehensive parenting assessments for mothers with psychiatric disorders.
Positivity of spin foam amplitudes

The amplitude for a spin foam in the Barrett–Crane model of Riemannian quantum gravity is given as a product over its vertices, edges and faces, with one factor of the Riemannian 10j symbols appearing for each vertex, and simpler factors for the edges and faces. We prove that these amplitudes are always nonnegative for closed spin foams. As a corollary, all open spin foams going between a fixed pair of spin networks have real amplitudes of the same sign. This means one can use the Metropolis algorithm to compute expectation values of observables in the Riemannian Barrett–Crane model, as in statistical mechanics, even though this theory is based on a real-time (eiS) rather than imaginary-time e−S path integral. Our proof uses the fact that when the Riemannian 10j symbols are nonzero, their sign is positive or negative depending on whether the sum of the ten spins is an integer or half-integer. For the product of 10j symbols appearing in the amplitude for a closed spin foam, these signs cancel. We conclude with some numerical evidence suggesting that the Lorentzian 10j symbols are always nonnegative, which would imply similar results for the Lorentzian Barrett–Crane model.
A novel p64-related Cl-channel: subcellular distribution and nephron segment-specific expression.

Several closely related proteins that have been implicated as chloride channels of intracellular membranes have recently been described. We report here the molecular cloning and characterization of a new member of this family from human cells. On the basis of sequence similarity, we conclude that this new protein represents the human version of a previously described protein from rat brain named p64H1. The human version of p64H1 (huH1) is a 28.7-kDa protein that shows an apparent molecular mass of 31 kDa by SDS-PAGE. A single 4.5-kb message is detected on Northern blots and is present in all tissues probed. The protein is expressed in an intracellular vesicular pattern in Panc-1 cells that is distinct from the endoplasmic reticulum, fluid-phase endocytic, and transferrin-recycling compartments, but which does colocalize with caveolin. In human kidney, huH1 is highly expressed in a diffuse pattern in the apical domain of proximal tubule cells. huH1 is expressed less abundantly in a vesicular pattern in glomeruli and distal nephron.
TDP-43 Toxicity Proceeds via Calcium Dysregulation and Necrosis in Aging Caenorhabditis elegans Motor Neurons

Amyotrophic lateral sclerosis (ALS) is a heterogeneous disease with either sporadic or genetic origins characterized by the progressive degeneration of motor neurons. At the cellular level, ALS neurons show protein misfolding and aggregation phenotypes. Transactive response DNA-binding protein 43 (TDP-43) has recently been shown to be associated with ALS, but the early pathophysiological deficits causing impairment in motor function are unknown. Here we used Caenorhabditis elegans expressing mutant TDP-43A315T in motor neurons and explored the potential influences of calcium (Ca2+). Using chemical and genetic approaches to manipulate the release of endoplasmic reticulum (ER) Ca2+stores, we observed that the reduction of intracellular Ca2+ ([Ca2+]i) rescued age-dependent paralysis and prevented the neurodegeneration of GABAergic motor neurons. Our data implicate elevated [Ca2+]i as a driver of TDP-43-mediated neuronal toxicity. Furthermore, we discovered that neuronal degeneration is independent of the executioner caspase CED-3, but instead requires the activity of the Ca2+-regulated calpain protease TRA-3, and the aspartyl protease ASP-4. Finally, chemically blocking protease activity protected against mutant TDP-43A315T-associated neuronal toxicity. This work both underscores the potential of the C. elegans system to identify key targets for therapeutic intervention and suggests that a focused effort to regulate ER Ca2+ release and necrosis-like degeneration consequent to neuronal injury may be of clinical importance.
Dopamine-enabled anti-Hebbian timing-dependent plasticity in prefrontal circuitry

Spike timing-dependent plasticity (STDP) of glutamatergic synapses is a Hebbian associative plasticity that may underlie certain forms of learning. A cardinal feature of STDP is its dependence on the temporal order of presynaptic and postsynaptic spikes during induction: pre–post (positive) pairings induce t-LTP (timing-dependent long-term potentiation) whereas post–pre (negative) pairings induce t-LTD (timing-dependent long-term depression). Dopamine (DA), a reward signal for behavioral learning, is believed to exert powerful modulations on synapse strength and plasticity, but its influence on STDP has remained incompletely understood. We previously showed that DA extends the temporal window of t-LTP in the prefrontal cortex (PFC) from +10 to +30 ms, gating Hebbian t-LTP. Here, we examined DA modulation of synaptic plasticity induced at negative timings in layer V pyramidal neurons on mouse medial PFC slices. Using a negative timing STDP protocol (60 post–pre pairings at 0.1 Hz, δt = -30 ms), we found that DA applied during post–pre pairings did not produce LTD, but instead enabled robust LTP. This anti-Hebbian t-LTP depended on GluN2B-containing NMDA receptors. Blocking D1- (D1Rs), but not D2- (D2Rs) class DA receptors or disrupting cAMP/PKA signaling in pyramidal neurons also abolished this atypical t-LTP, indicating that it was mediated by postsynaptic D1R-cAMP/PKA signaling in excitatory synapses. Unlike DA-enabled Hebbian t-LTP that requires suppression of GABAergic inhibition and cooperative actions of both D1Rs and D2Rs in separate PFC excitatory and inhibitory circuits, DA-enabled anti-Hebbian t-LTP occurred under intact inhibitory transmission and only required D1R activation in excitatory circuit. Our results establish DA as a potent modulator of coincidence detection during associative synaptic plasticity and suggest a mechanism by which DA facilitates input-target association during reward learning and top-down information processing in PFC circuits.
Influence of Native Microbiota on Survival of Ralstonia solanacearum Phylotype II in River Water Microcosms

ABSTRACT Ralstonia solanacearum phylotype II biovar 2 causes bacterial wilt in solanaceous hosts, producing severe economic losses worldwide. Waterways can be major dissemination routes of this pathogen, which is able to survive for long periods in sterilized water. However, little is known about its survival in natural water when other microorganisms, such as bacteriophages, other bacteria, and protozoa, are present. This study looks into the fate of a Spanish strain of R. solanacearum inoculated in water microcosms from a Spanish river, containing different microbiota fractions, at 24°C and 14°C, for a month. At both temperatures, R. solanacearum densities remained constant at the initial levels in control microcosms of sterile river water while, by contrast, declines in the populations of the introduced strain were observed in the nonsterile microcosms. These decreases were less marked at 14°C. Lytic bacteriophages present in this river water were involved in the declines of the pathogen populations, but indigenous protozoa and bacteria also contributed to the reduced persistence in water. R. solanacearum variants displaying resistance to phage infection were observed, but only in microcosms without protozoa and native bacteria. In water microcosms, the temperature of 14°C was more favorable for the survival of this pathogen than 24°C, since biotic interactions were slower at the lower temperature. Similar trends were observed in microcosms inoculated with a Dutch strain. This is the first study demonstrating the influence of different fractions of water microorganisms on the survival of R. solanacearum phylotype II released into river water microcosms.
Role of stem cell factor and c-kit signaling in regulation of fetal intestinal epithelial cell adhesion to fibronectin.

The interaction of stem cell factor (SCF) and c-kit is considered to be an important signaling event for the homeostasis of the epithelial barrier function in the intestinal tract. This study was designed to investigate the role of the SCF and c-kit signaling pathway in adhesion of intestinal epithelial cells (IECs) to fibronectin (FN) using primary cells. Fetal murine IECs were prepared from the small intestine of mouse fetus. The mRNAs coding for SCF in mesenchymes and c-kit in IECs were detected by reverse transcription-PCR. The expression of FN receptor VLA-5 on IECs was examined by flow cytometry. A cell adhesion assay showed that the stimulation of IECs with SCF increased the number of cells adhering to FN. Experiments using specific antibody against SCF indicated that this increase in cell adhesion was SCF-dependent. On the other hand, SCF did not influence the expression of VLA-5 on IECs. The IEC adhesion to FN was inhibited by specific antibody against the FN receptor (VLA-5), as well as competitive Arg-Gly-Asp (RGD) peptide. When alteration of intracellular signal transduction induced by SCF was examined, it was found that SCF stimulated a tyrosine-specific c-kit autophosphorylation cascade of IECs. Further, preincubation of IECs with an optimal concentration of genistein resulted in the inhibition of SCF-induced c-kit phosphorylation and adhesion of IECs to FN. These results suggested that adhesion of immature IECs to FN is regulated by activation of RGD-dependent VLA-5 through the SCF and c-kit signal transduction pathway. SCF, which may be produced by mesenchymes locally, is an important regulatory factor for the adhesion of immature IECs to basement membrane matrix via VLA-5 and FN interaction. This cytokine-regulated interaction between VLA-5 and FN may play an important role in the development and wound repair of the intestinal tract.
A Comparative Study on the Suitability of Smartphones and IMU for Mobile, Unsupervised Energy Expenditure Calculi

The metabolic equivalent of task (MET) is currently the most used indicator for measuring the energy expenditure (EE) of a physical activity (PA) and has become an important measure for determining and supervising a person’s state of health. The use of new devices which are capable of measuring inertial movements by means of built-in accelerometers enable the PA to be measured objectively on the basis of the reckoning of “counts”. These devices are also known as inertial measurement units (IMUs) and each count is an aggregated value indicating the intensity of a movement and can be used in conjunction with other parameters to determine the MET rate of a particular physical activity and thus it’s associated EE. Various types of inertial devices currently exist that enable count calculus and physical activity to be monitored. The advent of mobile devices, such as smartphones, with empowered computation capabilities and integrated inertial sensors, has enabled EE to be measure in a distributed, ubiquitous and natural way, thereby overcoming the reluctance of users and practitioners associated with in-lab studies. From the point of view of the process analysis and infrastructure needed to manage data from inertial devices, there are also various differences in count computing: extra devices are required, out-of-device processing, etc. This paper presents a study to discover whether the estimation of energy expenditure is dependent on the accelerometer of the device used in measurements and to discover the suitability of each device for performing certain physical activities. In order to achieve this objective, we have conducted several experiments with different subjects on the basis of the performance of various daily activities with different smartphones and IMUs.
Store-operated calcium channel regulates the chemotactic behavior of ascidian sperm

The sperm-activating and -attracting factor released from the eggs of the ascidians Ciona intestinalis and Ciona savignyi requires extracellular Ca2+ for activating sperm motility and eliciting chemotactic behavior of the activated sperm toward the egg. Here, we show that modulators of the store-operated Ca2+ channel, SK&F96365, Ni2+, 2-aminoethoxydiphenylborane, and thapsigargin inhibit the chemotactic behavior of the ascidian sperm; on the other hand, blockers of voltage-dependent Ca2+ channels did not inhibit the chemotaxis, even though they inhibited the sperm activation operated by voltage-dependent Ca2+ channels. The blockers of store-operated Ca2+ channels also inhibited the asymmetrical flagellar beating and turning movements of the ascidian sperm, which are typical signs of sperm chemotaxis. Depletion of internal Ca2+ stores by thapsigargin induced capacitative Ca2+ entry into the sperm, which was blocked by SK&F96365. These results suggest that the intracellular Ca2+ concentration increase through the store-operated Ca2+ channels induces asymmetrical flagellar movements to establish the chemotactic behavior of the sperm.
Hepatocellular ATP-binding Cassette Protein Expression Enhances ATP Release and Autocrine Regulation of Cell Volume*

In a model liver cell line, recovery from swelling is mediated by a sensitive autocrine pathway involving conductive release of ATP, P2 receptor stimulation, and opening of membrane Cl− channels (Wang, Y., Roman, R. M., Lidofsky, S. D., and Fitz, J. G. (1996)Proc. Natl. Acad. Sci. U. S. A. 93, 12020–12025). However, the mechanisms coupling changes in cell volume to ATP release are not known. Based on evidence that certain ATP-binding cassette (ABC) proteins may function as ATP channels or channel regulators, we evaluated the potential role of ABC proteins by comparing ATP release and volume regulation in rat HTC and HTC-R hepatoma cells, the latter of which overexpress Mdr proteins. In both cell types, Cl−current activation (I Cl-swell) and volume recovery following swelling were dependent on conductive ATP efflux. The rate of volume recovery was ∼6-fold faster in HTC-R cells compared with HTC cells. This effect is likely due to enhanced ABC protein-dependent ATP release since (i)I Cl-swell and cell volume recovery were eliminated by inhibition of P-glycoprotein transport (20 μm verapamil and 15 μm cyclosporin A); (ii) swelling-induced Cl− current density was similar in both cell types (approximately −50 pA/pF; not significant); and (iii) ATP conductance measured by whole-cell techniques was increased ∼3-fold in HTC-R cells compared with HTC cells. Moreover, HTC-R cells exhibited enhanced survival during hypotonic stress. By modulating ATP release, hepatic ABC proteins may play a key role in the cellular pathways coupling changes in cell volume to ion permeability and secretion.
Dopaminergic substitution in Parkinson’s disease

Motor complications associated with long-term levodopa application, which follow the so-called honeymoon period of well-tolerated levodopa administration and are looked upon as one clinical marker for progression of Parkinson’s disease (PD), initiated a long and controversial debate on the putative neurotoxicity of levodopa. Since dopamine agonists (DA) delay onset of motor complications, they support the neuroprotective treatment strategy in PD. Efficacy and tolerability of DA differs in particular due to their affinity to various dopamine receptor subtypes. The accumulating evidence for levodopa-associated homocysteinaemia, which represents a risk factor for increased incidence of vascular disease in PD, supports the strategy of initial DA application and the use of levodopa as an add-on compound in as low a dose as possible in young PD patients.
The effect of occupational exposure to manganese dust and fume on neuropsychological functioning in Australian smelter workers

Chronic low-level occupational exposure to manganese (Mn) is reportedly associated with the development of Parkinsonian-like symptoms. In a study of 143 manganese smelter workers, inhalable Mn exposure was associated with lower performances on the Digit Symbol Coding and Stroop tests; respirable Mn exposure was associated with improved Digit Symbol Coding test performance and reduced performance on the Trail Making (Part A), Matrix Reasoning, and Stroop tests. While these relationships reached statistical significance, the magnitude of these effects was significantly smaller than the standard error of measurement of the neuropsychological tests, indicating that these differences are not of clinical significance.
Heavy Metals in Bottom Sediments of Reservoirs in the Lowland Area of Western Poland: Concentrations, Distribution, Sources and Ecological Risk

The paper presents the results of a study of heavy metals (HMs) concentrations in six retention reservoirs located in the lowland area of western Poland. The objectives of this study were to analyze the Cd, Cr, Cu, Ni, Pb and Zn concentrations, assess contamination and ecological risk, analyze the spatial variability of HM concentrations and identify potential sources and factors determining the concentration and spatial distribution. The bottom sediment pollution by HMs was assessed on the basis of the index of geo-accumulation (Igeo), enrichment factor (EF), pollution load index (PLI) and metal pollution index (MPI). To assess the ecological risk associated with multiple HMs, the mean probable effect concentration (PEC) quotient (Qm-PEC) and the toxic risk index (TRI) were used. In order to determine the similarities and differences between sampling sites in regard to the HM concentration, cluster analysis (CA) was applied. Principal component analysis (PCA) was performed to assess the impact of grain size, total organic matter (TOM) content and sampling site location on HM spatial distribution. Additionally, PCA was used to assess the impact of catchment, reservoir characteristics and hydrological conditions. The values of Igeo, EF, MPI and PLI show that Cd, Cr, Cu, Ni and Pb mainly originate from geogenic sources. In contrast, Zn concentrations come from point sources related to agriculture. The mean PEC quotient (Qm-PEC) and TRI value show that the greatest ecological risk occurred at the inlet to the reservoir and near the dam. The analysis showed that the HMs concentration depends on silt and sand content. However, the Pb, Cu, Cd and Zn concentrations are associated with TOM as well. The relationship between individual HMs and silt was stronger than with TOM. The PCA results indicate that HMs with the exception of Zn originate from geogenic sources—weathering of rock material. However, the Ni concentration may additionally depend on road traffic. The results show that a reservoir with more frequent water exchange has higher HMs concentrations, whereas the Zn concentration in bottom sediments is associated with agricultural point sources.