Miracle-dz/UniFAR-FTUs huggingface dataset:
Feasibility of Telecognitive Assessment in Dementia

Videoconferencing (VC) technology has been used successfully to provide psychiatric services to patients in rural and otherwise underserved settings. VC-based diagnostic interviewing has shown good agreement with conventional face-to-face diagnosis of dementia in several investigations, but extension of this technology to neurocognitive assessment has received little attention. To this end, the authors administered a brief battery of common neuropsychological tests via VC technology (telecognitive) and traditional face-to-face methods to 14 older persons with mild cognitive impairment (MCI) and 19 persons with mild to moderate Alzheimer’s disease (AD). Highly similar test scores were obtained when participants were tested in-person or via VC. Telecognitive assessment appears to be a valid means to conduct neuropsychological evaluation of older adults with cognitive impairment. Furthermore, continued development of VC technology has implications for expanding neuropsychological assessment options in under-served populations.
Serial and Parallel Search in Pattern Vision?

The nature of the processing of combinations of stimulus dimensions in human vision has recently been investigated. A study is reported in which visual search for suprathreshold positional information—vernier offsets, stereoscopic disparity, lateral separation, and orientation—was examined. The initial results showed that reaction times for visual search for conjunctions of stereoscopic disparity and either vernier offsets or orientation were independent of the number of distracting stimuli displayed, suggesting that disparity was searched in parallel with vernier offsets or orientation. Conversely, reaction times for detection of conjunctions of vernier offsets and orientation, or lateral separation and each of the other positional judgements, were related linearly to the number of distractors, suggesting serial search. However, practice has a significant effect upon the results, indicative of a shift in the mode of search from serial to parallel for all conjunctions tested as well as for single features. This suggests a reinter-pretation of these and perhaps other studies that use the Treisman visual search paradigm, in terms of perceptual segregation of the visual field by disparity, motion, color, and pattern features such as colinearity, orientation, lateral separation, or size.
Short communication Estimating Arundo donax shoot biomass

We developed an equation for estimating Arundo donax shoot dry weight from shoot length. The equation, shoot dry weight (g) = 14.254 (standard error = � 0.275) � shoot height 2 (m), was as effective at explaining a high proportion of total variation in shoot dry weight (R 2 = 0.90) as more complicated equations containing additional morphometric parameters. Tested against two independent datasets, the equation provided accurate estimates of dry weight for shoots ranging from 0.3 to 7.06 m height (dataset 1, P < 0.0001, R 2 = 0.87, N = 29; dataset 2, P < 0.0001, R 2 = 0.82, N = 192). The equation provides aboveground biomass estimates from stem counts and heights more rapidly than harvest methods.
Low-level methicillin resistance in strains of Staphylococcus aureus

Two strains of Staphylococcus aureus expressing borderline or low-level methicillin resistance by one or more in vitro test methods were examined for resistance in vivo and for biochemical and genetic markers of methicillin resistance. In vivo, nafcillin was equally effective against experimental aortic valve endocarditis in rabbits, regardless of whether they were infected by a fully susceptible or a low-level-resistant strain. Resistance did not emerge during therapy. For the more resistant of the two low-level-resistant strains, methicillin was as effective as nafcillin. Nafcillin was ineffective against endocarditis caused by a truly methicillin-resistant strain, and resistance emerged on therapy. The low-level-resistant strains did not produce the low-affinity penicillin-binding protein 2a that is associated with methicillin resistance and did not contain DNA that hybridized with probes that recognized the methicillin resistance determinant. Low-level resistance in S. aureus is a phenomenon that is biochemically and genetically distinct from true methicillin resistance. These strains actually are susceptible to beta-lactam antibiotics. The clinical problem posed by these strains is not a therapeutic one but, instead, one of how to differentiate them from those that are truly methicillin resistant.
ASCOS++

In this article, we explore the relationships among digital objects in terms of their similarity based on vertex similarity measures. We argue that SimRank—a famous similarity measure—and its families, such as P-Rank and SimRank++, fail to capture similar node pairs in certain conditions, especially when two nodes can only reach each other through paths of odd lengths. We present new similarity measures ASCOS and ASCOS++ to address the problem. ASCOS outputs a more complete similarity score than SimRank and SimRank’s families. ASCOS++ enriches ASCOS to include edge weight into the measure, giving all edges and network weights an opportunity to make their contribution. We show that both ASCOS++ and ASCOS can be reformulated and applied on a distributed environment for parallel contribution. Experimental results show that ASCOS++ reports a better score than SimRank and several famous similarity measures. Finally, we re-examine previous use cases of SimRank, and explain appropriate and inappropriate use cases. We suggest future SimRank users following the rules proposed here before naïvely applying it. We also discuss the relationship between ASCOS++ and PageRank.
Evaluation of Anaplasma marginale major surface protein 3 (MSP3) as a diagnostic test antigen

An immunodominant surface protein, major surface protein 3 (MSP3), has been proposed as an antigen suitable for use in the diagnosis of bovine anaplasmosis. We further characterized MSP3 to examine its potential as a test antigen for the serological diagnosis of carrier cattle. The specificity of this antigen in detecting infected cattle as well as the conservation of MSP3 between strains of Anaplasma marginale was evaluated by using immunoblots of A. marginale proteins separated by one- and two-dimensional polyacrylamide gel electrophoreses. Immune sera from animals infected with Anaplasma ovis, Ehrlichia risticii, and Ehrlichia ewingii reacted with the MSP3 antigen of A. marginale. One-dimensional gel electrophoresis of A. marginale proteins demonstrated size polymorphism of MSP3 between different geographic isolates. Two-dimensional gel electrophoresis revealed at least three different antigens migrating at the 86-kDa molecular size, and sera from animals infected with different strains of A. marginale reacted with different 86-kDa antigens. These results indicate that MSP3 may share cross-reactive epitopes with antigens found in A. ovis and some Ehrlichia spp. In addition, MSP3 is not conserved between different isolates of A. marginale, and at least in the isolate from Florida, what was previously identified as MSP3 is actually a group of three or more 86-kDa antigens with different isoelectric points. The cross-reactivity of MSP3 with some Ehrlichia spp. , the variability of MSP3 between isolates, and the multiple 86-kDa antigens recognized by various sera suggest that MSP3 is not a suitable candidate for use as a recombinant test antigen.
Update or wait: How to keep your data fresh

In this work we study how to manage the freshness of status updates sent from a source to a remote monitor via a network server. A proper metric of data freshness at the monitor is the age-of-information, which is defined as how old the freshest update is since the moment this update was generated at the source. A logical policy is the zero-wait policy, i.e., the source submits a fresh update once the server is free, which achieves the maximum throughput and the minimum average delay. Surprisingly, this zero-wait policy does not always minimize the average age. This motivates us to study how to optimally control the status updates to keep data fresh and to understand when the zero-wait policy is optimal. We introduce a penalty function to characterize the level of “dissatisfaction” on data staleness, and formulate the average age penalty minimization problem as a constrained semi-Markov decision process (SMDP) with an uncountable state space. Despite of the difficulty of this problem, we develop efficient algorithms to find the optimal status update policy. We show that, in many scenarios, the optimal policy is to wait for a certain amount of time before submitting a new update. In particular, the zero-wait policy can be far from the optimum if (i) the penalty function grows quickly with respect to the age, and (ii) the update service times are highly random and positive correlated. To the best of our knowledge, this is the first optimal control policy which is proven to minimize the age-of-information in status update systems.
Crossing the ‘Uncanny Valley’: Adaptation to Cartoon Faces Can Influence Perception of Human Faces

In this study we assessed whether there is a single face space common to both human and cartoon faces by testing whether adaptation to cartoon faces can affect perception of human faces. Participants were shown Japanese animation cartoon videos containing faces with abnormally large eyes. The use of animated videos eliminated the possibility of position-dependent retinotopic adaptation (because the faces appear at many different locations) and more closely simulated naturalistic exposure. Adaptation to cartoon faces with large eyes significantly shifted preferences for human faces toward larger eyes, consistent with a common, non-retinotopic representation for both cartoon and human faces. This supports the possibility that there are representations that are specific to faces yet common to all kinds of faces.
Identifying the Knowledge Networks in Mobile Ecosystem Based on Patent Citation Analysis

With the emergence of smartphones, the paradigm of the mobile ecosystem has changed rapidly. In particular, global mobile firms focus on technological competition when jostling for market position in recognition of the strategic need to secure a strong mobile platform. In this paper, we analyze the network structure of technological knowledge flows in mobile ecosystems using U.S. patent citation information. We find that two subsectors, platform providers and application & software providers, are at the center of knowledge exchange activity and play a brokerage role as the key knowledge mediator. Then, we categorize mobile firms into five different groups based on the patterns of their network centrality: knowledge keystone players, knowledge-distributing mediators, knowledge-absorbing mediators, catch-up players, and pure knowledge receivers. The categorization of firms demonstrates that knowledge flows in the mobile industry converge toward a few leading firms, and such patterns are shaping the mobile ecosystem with respect to technological knowledge. The firms categorized as catch-up players have played a brokerage role within their group, while the firms categorized as knowledge keystone players play a brokerage role across different groups.
Control of Hysteresis in Smart Actuators. Part 1. Modeling, Parameter Identification, and Inverse Control

Abstract : Hysteresis in smart actuators presents a challenge in control of these actuators. A fundamental idea to cope with hysteresis is inverse compensation. In this paper we study modeling, identification and inverse control of hysteresis in smart actuators through the example of controlling a commercially available magnetostrictive actuator. The (rate-independent) Preisach operator has been used extensively to model the hysteresis in smart actuators. We present efficient inversion algorithms for the Preisach operator that are implementable in real-time. The magnetostrictive hysteresis is rate-dependent at high frequencies. For this we propose a novel dynamic hysteresis model by coupling a Preisach operator to an ordinary differential equation. This model can capture the dynamic and hysteretic behavior of the magnetostrictive actuator, and it provides insight into modeling of rate-dependent hysteresis in other smart materials. The effectiveness of the identification and inverse control schemes is demonstrated through extensive experimental results.
Multiplex ligation-dependent probe amplification analysis of uveal melanoma with extraocular extension demonstrates heterogeneity of gross chromosomal abnormalities.

PURPOSE To determine whether biopsy of extraocular extension of uveal melanoma (UM) is representative of the intraocular tumor with respect to copy number of chromosomes 1p, 3, 6, and 8. METHODS Multiplex ligation-dependent probe amplification (MLPA) using the P027 assay was performed on formalin-fixed, paraffin-embedded sections from 10 UMs. The intraocular and extraocular parts of the tumor were microdissected and analyzed separately. RESULTS Of the 10 UMs analyzed, seven showed heterogeneity for at least one chromosome arm; the most frequently heterogeneous chromosome arm was 6p. No heterogeneity of 8p was observed between the intraocular and extraocular areas of the tumor. One tumor showed monosomy 3 in the intraocular area of the tumor but loss of the 3q arm only for the extraocular area. CONCLUSIONS Biopsy of an extraocular tumor extension may not be representative of the underlying UM with respect to chromosome 1p, 3, 6, and 8q abnormalities detectable by MLPA. These results suggest that for UM with extraocular extension, both the intraocular and the extraocular parts of the tumor should be sampled for accurate genetic prognostic testing.
Symbiodinium clades A and D differentially predispose Acropora cytherea to disease and Vibrio spp. colonization

Abstract Coral disease outbreaks have increased over the last three decades, but their causal agents remain mostly unclear (e.g., bacteria, viruses, fungi, protists). This study details a 14‐month‐long survey of coral colonies in which observations of the development of disease was observed in nearly half of the sampled colonies. A bimonthly qPCR method was used to quantitatively and qualitatively evaluate Symbiodinium assemblages of tagged colonies, and to detect the presence of Vibrio spp. Firstly, our data showed that predisposition to disease development in general, and, more specifically, infection by Vibrio spp. in Acropora cytherea depended on which clades of Symbiodinium were harbored. In both cases, harboring clade D rather than A was beneficial to the coral host. Secondly, the detection of Vibrio spp. in only colonies that developed disease strongly suggests opportunistic traits of the bacteria. Finally, even if sporadic cases of switching and probably shuffling were observed, this long‐term survey does not suggest specific‐clade recruitment in response to stressors. Altogether, our results demonstrate that the fitness of the coral holobiont depends on its initial consortium of Symbiodinium, which is distinct among colonies, rather than a temporary adaptation achieved through acquiring different Symbiodinium clades.
A Logical Framework to Represent and Reason about Graded Preferences and Intentions

In intentional agents, actions are derived from the mental attitudes and their relationships. In particular, preferences (positive desires) and restrictions (negative desires) are important proactive attitudes which guide agents to intentions and eventually to actions. In this paper, we present a general logical framework to represent and reasoning about gradual notions of desires and intentions, including sound and complete axiomatizations. Some extensions are proposed corresponding to certain additional constraints that the agent can set about the kind of preferences she is dealing with. We also show that the framework is expressive enough to describe how desires, together with other information, can lead agents to intentions.
Oral Health Condition of School Children in Nawalparasi District, Nepal.

BACKGROUND Oral diseases and feeding habits are inextricably linked. Significance of assessing oral health conditions among the school children therefore exists. The current study investigated the oral health condition among 5-6 years and 12-13 years children in Nawalparasi district, Nepal. METHODS Recruiting 1,000 school children aged (5-6) and (12-13) years in Nawalparasi district, a cross-sectional study was carried out from November to December, 2014. Data assembled from standard instrument was entered in Epi-Data 3.1, cleaned in SPSS version 16.0, and analyzed in Epi Info 3.5. 4. RESULTS Of 12-13 years children, three out of ten (32.0%, 95% CI: 27.8-36.4) suffered from occasional dental discomfort and pain, and 8.1% (95% CI: 5.9-11.0) often experienced dental discomfort and pain during the last 12 months. It was 73.6% (95% CI: 69.3-77.4) who brushed teeth at least once a day, while another 20.7% (95% CI: 17.2-24.7) brushed twice a day. Among all children, 86.1% (95% CI: 82.6-89.1) used toothpaste to brush the teeth. A three-fourth (73.8%, 95% CI: 69.5-77.7) drank tea with sugar daily. Dental caries was visible on 42.2% (95% CI: 37.7-46.8) (mean DMFT score 2.3 ± 1.5). Likewise, a quarter (24.1%, 95% CI: 20.3-28.3) had gingival bleeding, 10.9% (95% CI: 8.3-14.1) questionable enamel fluorosis, 4.5% (95% CI: 2.9-6.9) dental trauma, and 1.7% (95% CI: 0.8-3.5) oral mucosal lesion. Referral for preventive/routine treatment was observed in 40.5% (95% CI: 36.145.1). Among 5-6 years old children, a remarkable proportion of dental caries (64.4%, 95% CI: 59.2-69.4 and mean DMFT score 4.4 ± 3.0) was noted. Statistics of enamel fluorosis, dental trauma, and oral mucosal lesions in this age group were: 3.1% (95% CI: 1.6-5.6), 1.7% (95% CI: 0.7-3.8), and 1.1% (95% CI: 0.4-3.0) respectively. About 40.1% (95% CI: 35.0-45.4) were referred for preventive treatment, and the rest for prompt treatment. CONCLUSIONS Oral health of the children was poor, chiefly dental carries remained widespread. Dental hygiene awareness should be promoted in schools in active coordination and collaboration with education authorities.
Flexural subsidence analysis of the Laxmi Basin, Arabian Sea and its tectonic implications

Abstract Two-dimensional flexural backstripping and thermal modelling (assuming laterally variable stretching) is applied along regional depth-converted interpreted seismic profiles from the Laxmi Basin in the Arabian Sea. Results from reverse post-rift flexural modelling reveal considerable basin-wide subsidence in response to the crustal geodynamics during and after the last extensional phase. Unloading of the stratigraphy allows us to estimate the degree of laterally varying extension, assuming thermal subsidence and pure shear. High degrees of extension in the basin centre predict considerable water depths at the time of rift cessation, consistent with deep drilling data. We suggest that regional extension prior to Paleocene time could have fuelled variable subsidence in the Laxmi Basin but that extension is less than seen in typical oceanic lithosphere. Volcanic loading by the seamounts shortly after extension has flexed the basin and implies an effective elastic thickness (Te) at that time of ∼6 km. Reconstruction of the seamount top near sea level at the end of emplacement indicates no major transient uplift potentially linked to the Deccan mantle plume activity. Backstripping of post-rift sediments from interpreted seismic profiles supports the presence of a hyper-thinned crust underneath the Laxmi Basin, with β factors reaching >7 in the basin centre and ∼3 across much of the basin width. Computations of decompacted sediment accumulation rates in light of new results from IODP Expedition 355 show that basin sedimentation peaked during early–middle Miocene time, possibly coeval with uplift and erosion of the Himalayan–Tibetan Plateau driven by strong summer monsoon rains.
Evolution of the Nearshore Bed Envelope

The temporal growth of the envelope of bed motion owing to the migration of bedforms, which can be considered a proxy for maximum object burial depth, is examined using five different data sets. These data sets support the hypothesis that the envelope of bed motion will grow as an exponential taper, quickly at first, tapering off and approaching an asymptotic value. This growth is largest and fastest in the surf zone where wave and current flows are strong. Within the surf zone, envelopes owing solely to the migration of megaripples (bedforms with heights from 20 to 40 cm and lengths from 1 to 5 m) grow for about 8 d and reach an asymptote of about 40 cm. When wave energy becomes larger ( 1 m), bed envelopes are dominated by migrating sand bars and approach an asymptote of 3-4 m, but only after 2-12 years (depending on the beach). In addition, the frequency of object burial (the percentage of time that an object would be buried by the crests of migrating bedforms) is highest in the surf zone and grows rapidly with time.
Characterization of Colonizing Staphylococcus aureus Isolated from Surgical Wards' Patients in a Nigerian University Hospital

In contrast to developed countries, only limited data on the prevalence, resistance and clonal structure of Staphylococcus aureus are available for African countries. Since S. aureus carriage is a risk factor for postoperative wound infection, patients who had been hospitalized in surgical wards in a Nigerian University Teaching Hospital were screened for S. aureus carriage. All S. aureus isolates were genotyped (spa, agr) and assigned to multilocus sequence types (MLST). Species affiliation, methicillin-resistance, and the possession of pyrogenic toxin superantigens (PTSAg), exfoliative toxins (ETs) and Panton-Valentine Leukocidin (PVL) were analyzed. Of 192 patients screened, the S. aureus carrier rate was 31.8 % (n = 61). Of these isolates, 7 (11.5%) were methicillin-resistant (MRSA). The isolates comprised 24 spa types. The most frequent spa types were t064, t084, t311, and t1931, while the most prevalent MLST clonal complexes were CC5 and CC15. The most frequent PTSAg genes detected were seg/sei (41.0%) followed by seb (29.5%), sea (19.7%), seh (14.7%) and sec (11.5). The difference between the possession of classical and newly described PTSAg genes was not significant (63.9% versus 59.0% respectively; P = 0.602). PVL encoding genes were found in 39.3% isolates. All MRSA isolates were PVL negative, SCCmec types I and VI in MLST CC 5 and CC 30, respectively. Typing of the accessory gene regulator (agr) showed the following distribution: agr group 1 (n = 20), group II (n = 17), group III (n = 14) and group IV (n = 10). Compared to European data, enterotoxin gene seb and PVL-encoding genes were more prevalent in Nigerian methicillin-susceptible S. aureus isolates, which may therefore act as potential reservoir for PVL and PTSAg genes.