Miracle-dz/UniFAR-FTUs huggingface dataset:
The Relative Impact of Climate Change on the Extinction Risk of Tree Species in the Montane Tropical Andes

There are widespread concerns that anthropogenic climate change will become a major cause of global biodiversity loss. However, the potential impact of climate change on the extinction risk of species remains poorly understood, particularly in comparison to other current threats. The objective of this research was to examine the relative impact of climate change on extinction risk of upper montane tree species in the tropical Andes, an area of high biodiversity value that is particularly vulnerable to climate change impacts. The extinction risk of 129 tree species endemic to the region was evaluated according to the IUCN Red List criteria, both with and without the potential impacts of climate change. Evaluations were supported by development of species distribution models, using three methods (generalized additive models, recursive partitioning, and support vector machines), all of which produced similarly high AUC values when averaged across all species evaluated (0.82, 0.86, and 0.88, respectively). Inclusion of climate change increased the risk of extinction of 18–20% of the tree species evaluated, depending on the climate scenario. The relative impact of climate change was further illustrated by calculating the Red List Index, an indicator that shows changes in the overall extinction risk of sets of species over time. A 15% decline in the Red List Index was obtained when climate change was included in this evaluation. While these results suggest that climate change represents a significant threat to tree species in the tropical Andes, they contradict previous suggestions that climate change will become the most important cause of biodiversity loss in coming decades. Conservation strategies should therefore focus on addressing the multiple threatening processes currently affecting biodiversity, rather than focusing primarily on potential climate change impacts.
Completeness of lung cancer surgery: is mediastinal dissection common practice?

OBJECTIVES In patients with early-stage non-small cell lung cancer, surgery offers the best chance of cure when a complete resection, including mediastinal lymph node dissection, is performed. A definition for complete resection and guidelines for intra-operative lymph node staging have been published, but it is unclear whether these guidelines are followed in daily practice. The goal of this study was to evaluate the extent of mediastinal lymph node dissection routinely performed during lung cancer surgery, and hereby the completeness of resection according to the guidelines of the European Society of Thoracic Surgery (ESTS) for intra-operative lymph node staging. METHODS In a retrospective cohort study, the extent of mediastinal lymph node dissection was evaluated in 216 patients who underwent surgery for lung cancer with a curative intent in four different hospitals, three community hospitals and one university hospital. Data regarding clinical staging, the type of resection and extent of lymph node dissection were collected from both the patient's medical record and the surgical and pathology report. Based on histology, location and side of the primary tumour, the extent of mediastinal dissection was compared with the ESTS guidelines for intra-operative lymph node staging. RESULTS According to the surgical report interlobar and hilar lymph nodes were dissected in one-third of patients. A mediastinal lymph node exploration was performed in 75% of patients; however, subcarinal lymph nodes were dissected in <50% of patients and at least three mediastinal lymph node stations were investigated in 36% of patients. In 35% of the mediastinal stations explored, lymph nodes were sampled instead of a complete dissection of the entire station. A complete lymph node dissection according to the guidelines of the ESTS was performed in 4% of patients. Despite an incomplete dissection unexpected mediastinal lymph nodes were found in 5% of patients. CONCLUSIONS In daily practice, the intended curative resection for lung cancer cannot be considered complete in the majority of patients, because of an incomplete lymph node dissection according to the current guidelines of the ESTS.
An Accounting Perspective on Intellectual Capital ♦

In this chapter we provide an accounting perspective on intellectual capital. For this purpose we will first provide an overview of how the topic of intellectual capital has evolved in the field of accounting. We will then discuss its definitions and the current regulatory standards as well as the latest scholarly thinking. In the concluding section we discuss potential future developments of accounting standards.
Is Deep Learning Safe for Robot Vision? Adversarial Examples Against the iCub Humanoid

Deep neural networks have been widely adopted in recent years, exhibiting impressive performances in several application domains. It has however been shown that they can be fooled by adversarial examples, i.e., images altered by a barely-perceivable adversarial noise, carefully crafted to mislead classification. In this work, we aim to evaluate the extent to which robot-vision systems embodying deep-learning algorithms are vulnerable to adversarial examples, and propose a computationally efficient countermeasure to mitigate this threat, based on rejecting classification of anomalous inputs. We then provide a clearer understanding of the safety properties of deep networks through an intuitive empirical analysis, showing that the mapping learned by such networks essentially violates the smoothness assumption of learning algorithms. We finally discuss the main limitations of this work, including the creation of real-world adversarial examples, and sketch promising research directions.
Immunohistochemical Study of Pepsinogen C Expression in Cutaneous Malignant Melanoma: Association with Clinicopathological Parameters

Background The aim of this study was to evaluate the pepsinogen C expression in malignant cutaneous melanomas and analyze its possible relationship to clinical and pathological parameters. Pepsinogen C is an aspartyl proteinase primarily involved in the digestion of proteins in the stomach and represents one of the main androgen-inducible proteins in breast cancer cells. Method Tumoral pepsinogen C expression was retrospectively analyzed in 35 paraffin-embedded tissues from patients with primary malignant cutaneous melanoma and in 10 samples from 10 benign lesions (4 dermal melanocytic nevi, 4 compound melanocytic nevi and 2 dysplastic melanocytic nevi), using immunohistochemical methods. Results The benign lesions were consistently negative for pepsinogen C, whereas 20 of the 35 malignant melanomas (57%) showed positive immunostaining for pepsinogen C. The percentage of pepsinogen C-positive tumors was significantly higher in men than in women (p=0.01) and in epithelioid melanomas than in fusocellular or mixed type melanomas (p=0.003). In addition, the percentage of pepsinogen-C positive tumors was positively and significantly correlated with lesion thickness (p=0.003), Clark's level of invasion (p=0.028) and tumor stage (p<0.001). Conclusion Pepsinogen C could be a new prognosticator of unfavorable outcome in cutaneous malignant melanoma.
A new metriorhynchid crocodylomorph from the Oxford Clay Formation (Middle Jurassic) of England, with implications for the origin and diversification of Geosaurini

Metriorhynchids are an extinct group of Jurassic–Cretaceous crocodylomorphs secondarily adapted to a marine lifestyle. A new metriorhynchid crocodylomorph from the Oxford Clay Formation (Callovian, Middle Jurassic) of England is described. The specimen is a large, fragmentary skull and associated single ramus of a lower jaw uniquely preserved in a septarian concretion. The description of the specimen reveals a series of autapomorphies (apicobasal flutings on the middle labial surface of the tooth crowns, greatly enlarged basoccipital tuberosities) and a unique combination of characters that warrant the creation of a new genus and species: Ieldraan melkshamensis gen. et sp. nov. This taxon shares numerous characters with the Late Jurassic–Early Cretaceous genus Geosaurus: tooth crowns that have three apicobasal facets on their labial surface, subtly ornamented skull and lower jaws elements, and reception pits along the lateral margin of the dentary (maxillary overbite). Phylogenetic analysis places this new species as the sister taxon to Geosaurus. The new taxon adds valuable information on the time of origin of the macrophagous subclade Geosaurini, which was initially thought to have evolved and radiated during the Late Jurassic. The presence of Ieldraan melkshamensis, the phylogenetic re-evaluation of Suchodus durobrivensis as a Plesiosuchus sister taxon and recently identified Callovian Dakosaurus-like specimens in the Oxford Clay Formation, indicate that all major Geosaurini lineages originated earlier than previously supposed. This has major implications for the evolution of macropredation in the group. Specifically, we can now demonstrate that the four different forms of true ziphodonty observed in derived geosaurins independently evolved from a single non-functional microziphodont common ancestor. http://zoobank.org/urn:lsid:zoobank.org:pub:7A400670-A339-463F-8CD4-8704745CB312
How many nurses per patient? Measurements of nurse staffing in health services research.

OBJECTIVE To compare alternative measures of nurse staffing and assess the relative strengths and limitations of each measure. DATA SOURCES/STUDY SETTING Primary and secondary data from 2000 and 2002 on hospital nurse staffing from the American Hospital Association, California Office of Statewide Health Planning and Development, California Nursing Outcomes Coalition, and the California Workforce Initiative Survey. STUDY DESIGN Hospital-level and unit-level data were compared using summary statistics, t-tests, and correlations. DATA COLLECTION/EXTRACTION METHODS Data sources were matched for each hospital. When possible, hospital units or types of units were matched within each hospital. Productive nursing hours and direct patient care hours were converted to full-time equivalent employment and to nurse-to-patient ratios to compare nurse staffing as measured by different surveys. PRINCIPAL FINDINGS The greatest differences in staffing measurement arise when unit-level data are compared with hospital-level aggregated data reported in large administrative databases. There is greater dispersion in the data obtained from publicly available, administrative data sources than in unit-level data; however, the unit-level data sources are limited to a select set of hospitals and are not available to many researchers. CONCLUSIONS Unit-level data collection may be more precise. Differences between databases may account for differences in research findings.
The Role of Agriculture in Development

A longstanding question in economics is why some countries are so much richer than others. Today, for example, income per capita in the world's richest countries is roughly thirty-five times greater than it is in the world's poorest countries. Recent work (e.g., Robert E. Lucas 2001, and Rachel Ngai 1999) argues that the proximate cause of this disparity is that today's poor countries began the process of industrialization much later and that this process is slow. In this paper we argue that a model of structural transformation provides a useful theory of both why industrialization occurs at different dates, and why it proceeds slowly. A key implication of this model is that growth in agricultural productivity is central to development, a message that also appears prominently in the traditional development literature. (See, e.g., Peter Timmer (1986)).
The Warwick Agreement on femoroacetabular impingement syndrome (FAI syndrome): an international consensus statement

The 2016 Warwick Agreement on femoroacetabular impingement (FAI) syndrome was convened to build an international, multidisciplinary consensus on the diagnosis and management of patients with FAI syndrome. 22 panel members and 1 patient from 9 countries and 5 different specialties participated in a 1-day consensus meeting on 29 June 2016. Prior to the meeting, 6 questions were agreed on, and recent relevant systematic reviews and seminal literature were circulated. Panel members gave presentations on the topics of the agreed questions at Sports Hip 2016, an open meeting held in the UK on 27–29 June. Presentations were followed by open discussion. At the 1-day consensus meeting, panel members developed statements in response to each question through open discussion; members then scored their level of agreement with each response on a scale of 0–10. Substantial agreement (range 9.5–10) was reached for each of the 6 consensus questions, and the associated terminology was agreed on. The term ‘femoroacetabular impingement syndrome’ was introduced to reflect the central role of patients' symptoms in the disorder. To reach a diagnosis, patients should have appropriate symptoms, positive clinical signs and imaging findings. Suitable treatments are conservative care, rehabilitation, and arthroscopic or open surgery. Current understanding of prognosis and topics for future research were discussed. The 2016 Warwick Agreement on FAI syndrome is an international multidisciplinary agreement on the diagnosis, treatment principles and key terminology relating to FAI syndrome. The Warwick Agreement on femoroacetabular impingement syndrome has been endorsed by the following 25 clinical societies: American Medical Society for Sports Medicine (AMSSM), Association of Chartered Physiotherapists in Sports and Exercise Medicine (ACPSEM), Australasian College of Sports and Exercise Physicians (ACSEP), Austian Sports Physiotherapists, British Association of Sports and Exercise Medicine (BASEM), British Association of Sport Rehabilitators and Trainers (BASRaT), Canadian Academy of Sport and Exercise Medicine (CASEM), Danish Society of Sports Physical Therapy (DSSF), European College of Sports and Exercise Physicians (ECOSEP), European Society of Sports Traumatology, Knee Surgery and Arthroscopy (ESSKA), Finnish Sports Physiotherapist Association (SUFT), German-Austrian-Swiss Society for Orthopaedic Traumatologic Sports Medicine (GOTS), International Federation of Sports Physical Therapy (IFSPT), International Society for Hip Arthroscopy (ISHA), Groupo di Interesse Specialistico dell’A.I.F.I. , Norwegian Association of Sports Medicine and Physical Activity (NIMF), Norwegian Sports Physiotherapy Association (FFI), Society of Sports Therapists (SST), South African Sports Medicine Association (SASMA), Sports Medicine Australia (SMA), Sports Doctors Australia (SDrA), Sports Physiotherapy New Zealand (SPNZ), Swedish Society of Exercise and Sports Medicine (SFAIM), Swiss Society of Sports Medicine (SGMS/SGSM), Swiss Sports Physiotherapy Association (SSPA).
PALM-3000: EXOPLANET ADAPTIVE OPTICS FOR THE 5 m HALE TELESCOPE

We describe and report first results from PALM-3000, the second-generation astronomical adaptive optics (AO) facility for the 5.1 m Hale telescope at Palomar Observatory. PALM-3000 has been engineered for high-contrast imaging and emission spectroscopy of brown dwarfs and large planetary mass bodies at near-infrared wavelengths around bright stars, but also supports general natural guide star use to V ≈ 17. Using its unique 66 × 66 actuator deformable mirror, PALM-3000 has thus far demonstrated residual wavefront errors of 141 nm rms under ∼1″ seeing conditions. PALM-3000 can provide phase conjugation correction over a 6. ″4 × 6. ″4 working region at λ = 2.2 μm, or full electric field (amplitude and phase) correction over approximately one-half of this field. With optimized back-end instrumentation, PALM-3000 is designed to enable 10−7 contrast at 1″ angular separation, including post-observation speckle suppression processing. While continued optimization of the AO system is ongoing, we have already successfully commissioned five back-end instruments and begun a major exoplanet characterization survey, Project 1640.
Transmit power allocation for a downlink two-user interference channel

We develop the optimal transmit power allocation scheme that maximizes the total throughput for a downlink two-user interference channel. The derived optimal scheme allocates the total power to one user in better channel state, as in the greedy scheme, when the degree of interference between users exceeds a certain threshold. When it is less than the threshold, on the contrary, the transmit power is divided into two users, as in the water-filling scheme. Numerical results are presented to verify the optimality of the derived scheme and to show throughput gains over the greedy and water-filling schemes.
Spectrum of a fluid-loaded vibrating plate: the multiple resonance phenomenon

It was recently observed in a numerical study on a high order perturbation method under heavy fluid loading that a loaded vibrating plate results, not only in the classical frequency shift of the in vacuo single resonance (in both the real part because of the fluid added mass and the imaginary part because of energy lost by radiation), but also in an increase in the number of the resonance. As a result of the loading, a single in vacuo resonance of the structure is transformed into a multiple resonance. Here we show that this phenomenon is a refinement of the Sanchez's classical result where it was established, using asymptotic analysis, that in the case of a light loading conditions " the scattering frequencies of a fluid loaded elastic structure (ie the resonance frequencies) are nearly the real eigenfrequencies of the elastic body alone and the complex scattering frequencies of the fluid with a rigid solid ". A theoretical explanation of the multiple resonances is given using classical results on theory of entire functions. It is established that every single in vacuo resonance of a simply supported rectangular plate is transformed into an infinite number of resonances under fluid-loading condition.
Categorical Local-Shape Perception

How well do observers perceive the local shape of an object from its shaded image? This problem was addressed by first deriving a potential representation of local solid shape. The descriptor of local shape, called shape characteristic, provides a viewpoint-independent continuum between hyperbolic (saddle-shaped) and elliptic (egg-shaped) points. The ability of human observers to make categorical judgments of local solid shape was then studied. This question was investigated by using a smooth ‘croissant’, a simple object made of two connected regions of elliptic and hyperbolic points. Observers decided whether the surface was locally elliptic or hyperbolic at various points on the object. The task was natural, and the observers could reliably partition the shaded image of the object into two regions, one elliptic and one hyperbolic. The ability of observers to perform this partition shows that they can, at least implicitly, localize the parabolic curves on a surface. This ability to locate the parabolic curve could in turn be exploited for other purposes, for instance to segment an object into its parts.
Cumulative Viral Load and Virologic Decay Patterns after Antiretroviral Therapy in HIV-Infected Subjects Influence CD4 Recovery and AIDS

Background The impact of viral load (VL) decay and cumulative VL on CD4 recovery and AIDS after highly-active antiretroviral therapy (HAART) is unknown. Methods and Findings Three virologic kinetic parameters (first year and overall exponential VL decay constants, and first year VL slope) and cumulative VL during HAART were estimated for 2,278 patients who initiated HAART in the U.S. Military HIV Natural History Study. CD4 and VL trajectories were computed using linear and nonlinear Generalized Estimating Equations models. Multivariate Poisson and linear regression models were used to determine associations of VL parameters with CD4 recovery, adjusted for factors known to correlate with immune recovery. Cumulative VL higher than the sample median was independently associated with an increased risk of AIDS (relative risk 2.38, 95% confidence interval 1.56–3.62, p<0.001). Among patients with VL suppression, first year VL decay and slope were independent predictors of early CD4 recovery (p = 0.001) and overall gain (p<0.05). Despite VL suppression, those with slow decay during the first year of HAART as well as during the entire therapy period (overall), in general, gained less CD4 cells compared to the other subjects (133 vs. 195.4 cells/µL; p = 0.001) even after adjusting for potential confounders. Conclusions In a cohort with free access to healthcare, independent of established predictors of AIDS and CD4 recovery during HAART, cumulative VL and virologic decay patterns were associated with AIDS and distinct aspects of CD4 reconstitution.
Variable visual habitats may influence the spread of colourful plumage across an avian hybrid zone

Several studies have shown that hybridization can be a creative process by acting as a conduit for the spread of adaptive traits between species, but few provide the mechanism that favours this spread. In the hybrid zone between the golden‐ (Manacus vitellinus) and white‐collared (Manacus candei) manakins, sexual selection drives the introgression of golden/yellow plumage into the white species; however, the mechanism for the yellow male's mating advantage and the reasons why yellow plumage has not swept further into the white species remain mostly speculative. We quantified the colour properties of male plumage, the background and the ambient light at the hybrid zone, and allopatric golden and white populations. As measured by the perceived difference in colour between plumage and background, we found that yellow plumage appears more conspicuous than white plumage in the hybrid zone and allopatric golden‐collar habitats, whereas white plumage appears more conspicuous than yellow plumage in the allopatric white‐collared habitat. These results suggest a mechanism for the unidirectional spread of yellow plumage across the hybrid zone but slowed movement beyond it.
NUTRITIONAL VALUE OF CONVENTIONAL AND MODIFIED DDGS FOR POULTRY

Several experiments were conducted to evaluate the variation in nutrient content and digestibility among different commercial samples of DDGS, the effects of different processing methods and feed additives on the bioavailability of P in DDGS and the effect of new processing technologies on the nutritional value of DDGS for poultry. The nutrient composition varied substantially among DDGS samples, with the greatest variation being found for Ca and Na content and digestibility of lysine. The mean TME content for 20 samples of DDGS was similar to the NRC (1994) table value. The mean bioavailability coefficient for P in 9 samples of DDGS was 79% and varied from 62 to 102%. Bioavailability of P was increased by additional heat processing but protein quality was reduced, particularly lysine digestibility. Particle size had no effect on P bioavailability whereas both phytase enzyme and citric acid increased P bioavailability. Two new processing technologies, modified dry grind and quick germ quick fiber (for removing germ and fiber) increased the protein and reduced the fat and fiber in DDGS and had varying effects on the lysine content. An elusieve process, sieving and air aspiration, reduced the fiber and increased the protein and fat in DDGS. The three new processing technologies generally had no effect on digestibility of amino acids in DDGS. Finally, a commercial sample of high-protein DDGS and corn germ meal were evaluated. Total P in the high-protein DDGS and corn germ meal was . 33 and 1.22%, respectively, and bioavailability of the P in the 2 samples were 58 and 25%, respectively. The total Lys as a % of CP was approximately two times greater for corn germ meal than the high-protein DDGS and the amino acid digestibilities were also higher for the corn germ meal, particularly for Lys.