Miracle-dz/UniFAR-FTUs huggingface dataset:
Paxillin expression is closely linked to the pathogenesis, progression and prognosis of gastric carcinomas

Paxillin encodes a focal adhesion-associated protein and is involved in the progression and aggressive phenotypes of malignancies through its interactions with the actin cytoskeleton and key signal transduction oncogenes. The present study aimed to investigate the clinicopathological and prognostic significance of paxillin in gastric cancer. The expression of paxillin was evaluated using tissue microarrays of gastric adjacent non-cancerous mucosa, adenoma and carcinoma specimens by immunohistochemistry. Paxillin expression was compared against clinicopathological parameters and the survival time of the patients. Paxillin was highly expressed in gastric adenoma compared with that in non-neoplastic mucosa and carcinoma (P<0.05). Paxillin expression was lower in the younger carcinoma patients compared with that in the elder carcinoma patients (P<0.05). Paxillin expression was negatively correlated with tumor size, depth of invasion and lymph node metastasis, but not with patient gender, lymphatic or venous invasion, or TNM staging (P>0.05). Higher paxillin expression was observed in intestinal-type compared with diffuse-type carcinoma (P<0.05). Kaplan-Meier analysis indicated a positive association between paxillin expression and cumulative survival rate in all, advanced and intestinal-type carcinoma patients (P<0.05). Multivariate analysis using the Cox proportional hazards model indicated that patient age, depth of invasion, lymphatic invasion, lymph node metastasis, TNM staging and Lauren classification were independent prognostic factors for all gastric carcinomas (P<0.05). Aberrant paxillin expression may be involved in the growth, invasion, metastasis and differentiation of gastric carcinoma. Altered paxillin expression may, therefore, be employed as an indicator of pathobiological behaviors and prognosis of gastric carcinomas.
Increased Water Storage in the Qaidam Basin, the North Tibet Plateau from GRACE Gravity Data

Groundwater plays a key role in maintaining the ecology and environment in the hyperarid Qaidam Basin (QB). Indirect evidence and data from sparse observation wells suggest that groundwater in the QB is increasing but there has been no regional assessment of the groundwater conditions in the entire basin because of its remoteness and the severity of the arid environment. Here we report changes in the spatial and temporal distribution of terrestrial water storage (TWS) in the northern Tibetan Plateau (NTP) using Gravity Recovery and Climate Experiment (GRACE) data. Our study confirms long-term (2003–2012) TWS increases in the NTP. Between 2003 and 2012 the TWS increased by 88.4 and 20.6 km3 in the NTP and the QB, respectively, which is 225% and 52% of the capacity of the Three Gorges Reservoir, respectively. Soil and water changes from the Global Land Data Assimilation System (GLDAS) were also used to identify groundwater storage in the TWS and to demonstrate a long-term increase in groundwater storage in the QB. We demonstrate that increases in groundwater, not lake water, are dominant in the QB, as observed by groundwater levels. Our study suggests that the TWS increase was likely caused by a regional increase in precipitation and a decrease in evaporation. Degradation of the permafrost increases the thickness of the active layers providing increased storage for infiltrated precipitation and snow and ice melt water, which may also contribute to the increased TWS. The huge increase of water storage in the NTP will have profound effects, not only on local ecology and environment, but also on global water storage and sea level changes.
Lexicalized Semi-incremental Dependency Parsing

Even leaving aside concerns of cognitive plausibility, incremental parsing is appealing for applications such as speech recognition and machine translation because it could allow for incorporating syntactic features into the decoding process without blowing up the search space. Yet, incremental parsing is often associated with greedy parsing decisions and intolerable loss of accuracy. Would the use of lexicalized grammars provide a new perspective on incremental parsing? In this paper we explore incremental left-to-right dependency parsing using a lexicalized grammatical formalism that works with lexical categories (supertags) and a small set of combinatory operators. A strictly incremental parser would conduct only a single pass over the input, use no lookahead and make only local decisions at every word. We show that such a parser suffers heavy loss of accuracy. Instead, we explore the utility of a two-pass approach that incrementally builds a dependency structure by first assigning a supertag to every input word and then selecting an incremental operator that allows assembling every supertag with the dependency structure built so-far to its left. We instantiate this idea in different models that allow a trade-off between aspects of full incrementality and performance, and explore the differences between these models empirically. Our exploration shows that a semi-incremental (two-pass), linear-time parser that employs fixed and limited look-ahead exhibits an appealing balance between the efficiency advantages of incrementality and the achieved accuracy. Surprisingly, taking local or global decisions matters very little for the accuracy of this linear-time parser. Such a parser fits seemlessly with the currently dominant finite-state decoders for machine translation.
Reduced Renal Mass, Salt-Sensitive Hypertension Is Resistant to Renal Denervation

Aim: Activation of the sympathetic nervous system is common in resistant hypertension (RHT) and also in chronic kidney disease (CKD), a prevalent condition among resistant hypertensives. However, renal nerve ablation lowers blood pressure (BP) only in some patients with RHT. The influence of loss of nephrons per se on the antihypertensive response to renal denervation (RDNx) is unclear and was the focus of this study. Methods: Systemic hemodynamics and sympathetically mediated low frequency oscillations of systolic BP were determined continuously from telemetrically acquired BP recordings in rats before and after surgical excision of ∼80% of renal mass and subsequent RDNx. Results: After reduction of renal mass, rats fed a high salt (HS) diet showed sustained increases in mean arterial pressure (108 ± 3 mmHg to 128 ± 2 mmHg) and suppression of estimated sympathetic activity (∼15%), responses that did not occur with HS before renal ablation. After denervation of the remnant kidney, arterial pressure fell (to 104 ± 4 mmHg), estimated sympathetic activity and heart rate (HR) increased concomitantly, but these changes gradually returned to pre-denervation levels over 2 weeks of follow up. Subsequently, sympathoinhibition with clonidine did not alter arterial pressure while significantly suppressing estimated sympathetic activity and HR. Conclusion: These results indicate that RDNx does not chronically lower arterial pressure in this model of salt-sensitive hypertension associated with substantial nephron loss, but without ischemia and increased sympathetic activity, thus providing further insight into conditions likely to impact the antihypertensive response to renal-specific sympathoinhibition in subjects with CKD.
Case Report: Atypical Cornelia de Lange Syndrome

Cornelia de Lange Syndrome (CdLS) (also called Bushy Syndrome or Amsterdam dwarfism), is a genetic disorder that can lead to several alterations. This disease affects both physical and neuropsychiatric development. The various abnormalities include facial dysmorphia (arched eyebrows, synophrys, depressed nasal bridge, long philtrum, down-turned angles of the mouth), upper-extremity malformations, hirsutism, cardiac defects, and gastrointestinal alterations. The prevalence of this syndrome is approximately one per 15,000. Ultrasound is not the perfect means to diagnose CdLS, however, many abnormalities can be detected prenatally by scrupulous image observation. We report an atypical CdLS case characterized by increased nuchal translucency in the first trimester, normal karyotype, saddle nose, micrognathia with receding jaw, low set ears, facies senilis, arthrogryposis of the hands, absence of the Aranzio ductus venous, dilatation of gallbladder and bowel, a unique umbilical artery, increased volume of amniotic fluid, and intrauterine growth retardation ending with the interruption of pregnancy.
Macrophage Migration Inhibitory Factor Antagonist Blocks the Development of Endometriosis In Vivo

Endometriosis, a disease of reproductive age women, is a major cause of infertility, menstrual disorders and pelvic pain. Little is known about its etiopathology, but chronic pelvic inflammation is a common feature in affected women. Beside symptomatic treatment of endometriosis-associated pain, only two main suboptimal therapeutic approaches (hormonal and invasive surgery) are generally recommended to patients and no specific targeted treatment is available. Our studies led to the detection of a marked increase in the expression of macrophage migration inhibitory factor (MIF) in the eutopic endometrium, the peripheral blood and the peritoneal fluid of women with endometriosis, and in early, vascularized and active endometriotic lesions. Herein, we developed a treatment model of endometriosis, where human endometrial tissue was first allowed to implant into the peritoneal cavity of nude mice, to assess in vivo the effect of a specific antagonist of MIF (ISO-1) on the progression of endometriosis and evaluate its efficacy as a potential therapeutic tool. Administration of ISO-1 led to a significant decline of the number, size and in situ dissemination of endometriotic lesions. We further showed that ISO-1 may act by significantly inhibiting cell adhesion, tissue remodeling, angiogenesis and inflammation as well as by altering the balance of pro- and anti-apoptotic factors. Actually, mice treatment with ISO-1 significantly reduced the expression of cell adhesion receptors αv and ß3 integrins (P<0.05), matrix metalloproteinases (MMP) 2 and 9 (P<0.05), vascular endothelial cell growth factor (VEGF) (P<0.01), interleukin 8 (IL8) (P<0.05), cyclooxygenease (COX)2 (P<0.001) and the anti-apoptotic protein Bcl2 (P<0.01), but significantly induced the expression of Bax (P<0.05), a potent pro-apoptotic protein. These data provide evidence that specific inhibition of MIF alters endometriotic tissue growth and progression in vivo and may represent a promising potential therapeutic avenue.
Image recovery from reduced sparse measurements by compressed sensing based on wavelet transform

In traditional sampling methods, images are sampled at the Nyquist rate for perfect reconstruction. But most of these acquired data samples are discarded during compression. Compressed Sensing (CS) overcomes this problem by combining the acquisition and compression process. Most of the images are sparse in some domain and thus can be recovered from reduced number of samples than the Nyquist rate. The quality of reconstruction depends upon the sparsity level of the image. Contourlet transform is used to obtain the sparse representation of the image while the wavelet transform reduces the complexity of the compressed sensing algorithm. Thus both the transforms are combined to achieve better recovery from reduced number of sparse measurements. The low frequency wavelet subband contains most of the information and thus more number of samples is taken from this band. The high frequency wavelet bands contain lesser amount of data and thus reduced number of samples is taken from these bands. The recovered image is smoothened by using the Hybrid Mean Median (HMM) Filter because of its nature of preserving the sharp edges in the image. Hence higher quality image is obtained from very less measurements.
Reliability analysis of vehicle-to-vehicle applications based on real world measurements

Safety applications are envisioned to be the first Vehicle-to-Vehicle (V2V) applications delivered to the mass market in the near future. In this paper, we address the question of achievable application-level reliability while operating over the Dedicated Short Range Communication (DSRC) channel. We advocate, that this reliability is a cumulative metric, which combines the main application operational requirements bounded with network performance metrics. In this context, we focus on (i) required information freshness and communication range, as main communication performance requirements and (ii) path prediction error, as application operational requirement. We present a novel simulation approach towards quantifying these metrics based on MATLAB vehicle dynamics models coupled with a driver reaction model. The input data for the simulation study is obtained empirically through real world experiments. This allows us to achieve numerical results with high accuracy. Further, based on data gathered in extensive real world measurement campaigns, we assess application-level reliability under different realistic conditions and perform a feasibility analysis of various NLOS scenarios while showing their potential for future V2V applications on the example of the Intersection Collision Warning (ICW). Finally, we investigate whether the packet delivery ratio (PDR) is capable to capture application-level reliability adequately and compare it with the metrics proposed in this work.
Radicalization of Glyceraldehyde-3-Phosphate Dehydrogenase by HOCl in Living Cells

A number of post-translational oxidative modifications of the enzyme “cell-redox sensor” glyceraldehyde-3- phosphate dehydrogenase (GAPDH) have been reported. These modifications affect GAPDH structure, function, and cell fate; however no free-radical mechanisms have been reported in these processes. Herein we used the nitrone 5,5-dimethyl-1-pyrroline N-oxide (DMPO)-based spin trapping techniques to examine a novel free radical mechanism that causes GAPDH inactivation and aggregation in RAW264.7 cells primed with lipopolysaccharide (LPS). In these primed cells, GAPDH is oxidized by myeloperoxidase (MPO)-derived hypochlorous acid (HOCl) resulting in loss of enzyme activity and aggregation, accumulation of lactate and cell death. Due to the close spatial and physical proximity between MPO and GAPDH, and the oxidizing potential of HOCl, it may be the main species that triggers radicalization of GAPDH that ultimately results in enzyme aggregation and inactivation in LPS-primed macrophages. Lysine residues are the primary radicalization sites formed upon reaction of HOCl with the enzyme. Our data highlight the important relationship between radicalization of GAPDH and fate of stressed cells, which might help teasing out the cell response to stress at sites of inflammation.
Familial Aggregation of Vibrio cholerae-associated Infection in Matlab, Bangladesh

Vibrio cholerae is a major cause of diarrhoeal illness in endemic regions, such as Bangladesh. Understanding the factors that determine an individual's susceptibility to infection due to V. cholerae may lead to improved prevention and control strategies. Increasing evidence suggests that human genetic factors affect the severity of V. cholerae-associated infection. This study, therefore, sought to characterize the heritable component of susceptibility to infection due to V. cholerae using the Matlab Health and Demographic Surveillance System database of the International Centre for Diarrhoeal Disease Research, Bangladesh. In total, 144 pedigrees that included a cholera patient and 341 pedigrees without a cholera patient were evaluated during 1 January–31 December 1992. The odds of the sibling of a patient being admitted with cholera were 7.67 times the odds of the sibling of an unaffected individual being admitted with cholera [95% confidence interval (CI) 2.40–24.5, p<0.001], after adjustment for gender, age, socioeconomic status, and hygiene practices. Although exposure to environmental reservoirs is essential in the epidemiology of cholera, household-specific factors, such as familial relatedness to an index case, may also be important determinants of risk of cholera. Further analysis of human genetic factors that contribute to susceptibility to cholera may be productive.
Greedy weighted matching for scheduling the input-queued switch

We consider greedy maximal weighted matching based scheduling for input-queued switches. We present simulation results that demonstrate the attractive throughput and delay performance achievable under maximal weighted matching. For the 2times2 input-queued switch we subsequently prove for i.i. d. Bernoulli arrival processes that greedy maximal weighted matching achieves 100% throughput.
vglut2 and gad expression reveal distinct patterns of dual GABAergic versus glutamatergic cotransmitter phenotypes of dopaminergic and noradrenergic neurons in the zebrafish brain

Throughout the vertebrate lineage, dopaminergic neurons form important neuromodulatory systems that influence motor behavior, mood, cognition, and physiology. Studies in mammals have established that dopaminergic neurons often use γ‐aminobutyric acid (GABA) or glutamatergic cotransmission during development and physiological function. Here, we analyze vglut2, gad1b and gad2 expression in combination with tyrosine hydroxylase immunoreactivity in 4‐day‐old larval and 30‐day‐old juvenile zebrafish brains to determine which dopaminergic and noradrenergic groups may use GABA or glutamate as a second transmitter. Our results show that most dopaminergic neurons also express GABAergic markers, including the dopaminergic groups of the olfactory bulb (homologous to mammalian A16) and the subpallium, the hypothalamic groups (A12, A14), the prethalamic zona incerta group (A13), the preoptic groups (A15), and the pretectal group. Thus, the majority of catecholaminergic neurons are gad1b/2‐positive and coexpress GABA. A very few gad1/2‐negative dopaminergic groups, however, express vglut2 instead and use glutamate as a second transmitter. These glutamatergic dual transmitter phenotypes are the Orthopedia transcription factor–dependent, A11‐type dopaminergic neurons of the posterior tuberculum. All together, our results demonstrate that all catecholaminergic groups in zebrafish are either GABAergic or glutamatergic. Thus, cotransmission of dopamine and noradrenaline with either GABA or glutamate appears to be a regular feature of zebrafish catecholaminergic systems. We compare our results with those that have been described for mammalian systems, discuss the phenomenon of transmitter dualism in the context of developmental specification of GABAergic and glutamatergic regions in the brain, and put this phenomenon in an evolutionary perspective. J. Comp. Neurol. 522:2019–2037, 2014. © 2013 Wiley Periodicals, Inc.
A microfluidic glucose sensor incorporating a novel thread‐based electrode system

An electrochemical sensor for the detection of glucose using thread‐based electrodes and fabric is described. This device is relatively simple to fabricate and can be used for multiple readings after washing with ethanol. The fabrication of the chip consisted of two steps. First, three thread‐based electrodes (reference, working, and counter) were fabricated by painting pieces of nylon thread with either layered silver ink and carbon ink or silver/silver chloride ink. The threads were then woven into a fabric chip with a beeswax barrier molded around the edges in order to prevent leaks from the tested solutions. A thread‐based working electrode consisting of one layer of silver underneath two layers of carbon was selected to fabricate the final sensor system. Using the chip, a PBS solution containing glucose oxidase (GOx) (10 mg/mL), potassium ferricyanide (K3[Fe(CN)6]) (10 mg/mL) as mediator, and different concentrations of glucose (0‐25 mM), was measured by cyclic voltammetry (CV). It was found that the current output from the oxidation of glucose was proportional to the glucose concentrations. This thread‐based electrode system is a viable sensor platform for detecting glucose in the physiological range.
New dinosaurs link southern landmasses in the Mid–Cretaceous

Abelisauroid predators have been recorded almost exclusively from South America, India and Madagascar, a distribution thought to document persistent land connections exclusive of Africa. Here, we report fossils from three stratigraphic levels in the Cretaceous of Niger that provide definitive evidence that abelisauroid dinosaurs and their immediate antecedents were also present on Africa. The fossils include an immediate abelisauroid antecedent of Early Cretaceous age (ca. 130–110 Myr ago), early members of the two abelisauroid subgroups (Noasauridae, Abelisauridae) of Mid–Cretaceous age (ca. 110 Myr ago) and a hornless abelisaurid skull of early Late Cretaceous age (ca. 95 Myr ago). Together, these fossils fill in the early history of the abelisauroid radiation and provide key evidence for continued faunal exchange among Gondwanan landmasses until the end of the Early Cretaceous (ca. 100 Myr ago).
Hypothesis and theory: mechanical instabilities and non-uniformities in hereditary sarcomere myopathies

Familial hypertrophic cardiomyopathy (HCM), due to point mutations in genes for sarcomere proteins such as myosin, occurs in 1/500 people and is the most common cause of sudden death in young individuals. Similar mutations in skeletal muscle, e.g., in the MYH7 gene for slow myosin found in both the cardiac ventricle and slow skeletal muscle, may also cause severe disease but the severity and the morphological changes are often different. In HCM, the modified protein function leads, over years to decades, to secondary remodeling with substantial morphological changes, such as hypertrophy, myofibrillar disarray, and extensive fibrosis associated with severe functional deterioration. Despite intense studies, it is unclear how the moderate mutation-induced changes in protein function cause the long-term effects. In hypertrophy of the heart due to pressure overload (e.g., hypertension), mechanical stress in the myocyte is believed to be major initiating stimulus for activation of relevant cell signaling cascades. Here it is considered how expression of mutated proteins, such as myosin or regulatory proteins, could have similar consequences through one or both of the following mechanisms: (1) contractile instabilities within each sarcomere (with more than one stable velocity for a given load), (2) different tension generating capacities of cells in series. These mechanisms would have the potential to cause increased tension and/or stretch of certain cells during parts of the cardiac cycle. Modeling studies are used to illustrate these ideas and experimental tests are proposed. The applicability of similar ideas to skeletal muscle is also postulated, and differences between heart and skeletal muscle are discussed.
atechol-o-Methyltransferase , Cognition , nd Psychosis : Val 158 Met and Beyond

his review summarizes our current understanding of catechol-o-methyltransferase (COMT) and how it relates to brain function and chizophrenia. We begin by considering the COMT gene, its transcripts and proteins, and its relevance for central catecholamine unction. We then describe how variation in COMT activity affects the function of the prefrontal cortex (PFC) and associated areas, eviewing evidence that COMT modulates executive function and working memory and highlighting recent data that also implicate t in emotional processing. Finally, we discuss briefly the genetic association between COMT and schizophrenia, focusing in particular n the complex interaction of functional loci within the gene that may underlie the mixed results of studies to date. We conclude by utlining preliminary data indicating that COMT is a promising therapeutic target for ameliorating the cognitive deficits associated ith schizophrenia.