Miracle-dz/UniFAR-FTUs huggingface dataset:
Mineral dust transport to the Sierra Nevada, California: Loading rates and potential source areas

[1] The transport and deposition of aeolian dust represents an important material input pathway for many marine and terrestrial ecosystems and may be an ecologically significant source of exogenous phosphorus (P) to alpine lakes. In order to assess the abundance and elemental composition of atmospheric mineral dust over the Sierra Nevada of California, we collected size-fractionated atmospheric particulate matter (PM) samples during July 2008 to March 2009 at a mixed conifer site located in Sequoia National Park. PM concentrations were at their highest levels during the dry season, averaging 8.8 ± 3.7 and 11.1 ± 7.5 μg m−3 for the coarse (1 μm < Da < 15 μm) and fine (Da < 1 μm) fractions, respectively, while winter months were characterized by low (<1 μg m−3) PM concentrations in both size fractions. Using Al as a diagnostic tracer for mineral aerosol, we observed a significant and uniform contribution (50–80%) from aeolian dust to the total coarse PM load, whereas submicron particles contained comparatively little crustal material (7–33%). The mass concentrations of elements (Fe, Ca, Mg, P, and V) in the coarse PM fraction were significantly correlated with Al throughout the study, and coarse PM exhibited elemental signatures that were temporally consistent and distinguishable from those of other sites. Conversely, higher elemental enrichments were observed in the fine PM fraction for Fe, V, and P, indicating a greater contribution from anthropogenic emissions to the fine particle load. Fe/Al and Fe/Ca ratios suggest a mixture of mineral dust from regional agricultural activities and long-range transport of mineral dust from Asia. Asian sources comprised 40–90% of mineral dust in July 2008 and then declined to between 10 and 30% in August and early September.
Fractional Delay Filter Design Based on Truncated Lagrange Interpolation

A new design method for fractional delay filters based on truncating the impulse response of the Lagrange interpolation filter is presented. The truncated Lagrange fractional delay filter introduces a wider approximation bandwidth than the Lagrange filter. However, because of truncation, a ripple caused by the Gibbs phenomenon appears in the filter's frequency response. Proper choices of filter order and prototype filter order allow adjusting the overshoot to a desired level and simultaneously reducing the overall frequency-response error. The design of the proposed filter is computationally efficient, because it is based on polynomial formulas, which have common terms for all coefficients.
Bransfield Basin fine-grained sediments: late-Holocene sedimentary processes and Antarctic oceanographic conditions

The Antarctic Peninsula is sensitive to climatic change due to its northerly position and to the relatively reduced volume and character of its ice cover. High-resolution palaeoclimatic records from the Ant arctic Peninsula ice cores extend back only 500 years. A climatic record of 2850 years in the Bransfield Basin is investigated through the analysis of sediment gravity cores from the floor of the central subbasin (core GEBRA-1) and the slope of the eastern subbasin (core GEBRA-2). Sedimentological, mineralogical and geo chemical properties have been systematically measured, together with Accelerator Mass Spectrometry (AMS) radiocarbon dating. The fine-grained sediments result from two main processes: hemipelagic settling from resuspensions and primary productivity, and turbidity currents. Hemipelagic sediments were selected to investi gate the oceanographic and climatic conditions of the northern Antarctic Peninsula region during the last three millennia. Cold climatic periods are characterized by millimetric laminations and/or black layers with higher organic carbon, nitrogen and opal contents. Warm periods are recorded as massive to diffuse laminated facies with lower biogenic contents. The results include the ‘Little Ice Age’ (LIA) cold pulse as well as several 200– 300 year long fluctuations within the LIA and before this major climatic event of the Holocene.
The behavioural effects of predator-induced stress responses in the cricket (Gryllus texensis): the upside of the stress response

SUMMARY Predator-induced stress responses are thought to reduce an animal's risk of being eaten. Therefore, these stress responses should enhance anti-predator behaviour. We found that individual insects (the cricket Gryllus texensis) show reliable behavioural responses (i.e. behavioural types) in a plus-shaped maze. An individual's behaviour in the plus maze remained consistent for at least 1/2 of its adult life. However, after exposure to a model predator, both male and female crickets showed a reduced period of immobility and an increased amount of time spent under shelter compared with controls. These changes could be mimicked by injections of the insect stress neurohormone octopamine. These behavioural changes probably aid crickets in evading predators. Exposure to a model predator increased the ability of crickets to escape a live predator (a bearded dragon, Pogona vitticeps). An injection of octopamine had the same effect, showing that stress hormones can reduce predation. Using crickets to study the fitness consequences of predator-induced stress responses will help integrate ecological and biomedical concepts of ‘stress’.
Esophageal Subepithelial Fibrosis and Hyalinization Are Features of Eosinophilic Esophagitis

Background and Objective: Eosinophilic esophagitis (EE) is characterized by marked esophageal mucosal eosinophilia on histological examination. Although the clinical and histological features of EE are increasingly recognized, the overlap of clinical symptoms and histological findings with gastroesophageal reflux disease (GERD) can lead to diagnostic difficulty. In children with EE we sought to define the frequency of subepithelial fibrosis and define the clinical correlates of this feature. The specificity of this finding in EE was obtained by comparison with a matched group of children with GERD, to ascertain its usefulness as a histological aid in differentiating between the 2 diagnoses. Patients and Methods: Comparison was made between 27 patients with EE and 24 patients with GERD, whose endoscopic biopsy specimens included subepithelial tissue. Demographic data, symptoms, endoscopic findings, and other histological findings were also compared. Results: In contrast to patients with GERD, those with EE more commonly reported longer periods of symptoms (especially dysphagia) and were more likely to have endoscopic abnormalities. Subepithelial fibrosis was present in 89% of patients with EE and 37.5% of patients with GERD (P < 0.0001). The features of fibrosis in EE included uniformity and hyalinization, whereas the fibrosis in GERD was predominantly associated with lymphoid tissue. Conclusions: Subepithelial fibrosis commonly occurs in children with EE and is associated with increased age and length of symptoms. We propose that along with mucosal eosinophilic infiltration the presence of subepithelial fibrosis is a feature of EE.
Differentiation Processes of Deccan Trap Basalts: Contribution from Geochemistry and Experimental Petrology

EARTHQUAKE RESEARCH INSTITUTE, THE UNIVERSITY OF TOKYO, TOKYO 113-0032, JAPAN INSTITUTE FOR GEOTHERMAL SCIENCES, KYOTO UNIVERSITY, NOGUCHIBARU, BEPPU 874-0903, JAPAN PLOT NO. 89, FRIENDS HOUSING SOCIETY LAYOUT-4, DEENDAYALNAGAR, NAGPUR 400 022, INDIA FACULTY OF GEO-ENVIRONMENTAL SCIENCES, RISSHO UNIVERSITY, KUMAGAYA 360-0194, JAPAN DEPARTMENT OF EARTH SCIENCES, NIHON UNIVERSITY, TOKYO 156-0045, JAPAN
Exploiting Local Low Dimensionality of the Atmospheric Dynamics for Efficient Ensemble Kalman Filtering

Recent studies (Patil et al. 2001a, 2001b) have shown that, when the Earth’s surface is divided up into local regions of moderate size, vectors of the forecast uncertainties in such regions tend to lie in a subspace of much lower dimension than that of the full atmospheric state vector. In this paper we show how this finding can be exploited to formulate a potentially accurate and efficient data assimilation technique. The basic idea is that, since the expected forecast errors lie in a locally low dimensional subspace, the analysis resulting from the data assimilation should also lie in this subspace. This implies that operations only on relatively low dimensional matrices are required. The data assimilation analysis is done locally in a manner allowing massively parallel computation to be exploited. The local analyses are then used to construct global states for advancement to the next forecast time. Potential advantages of the method are discussed.
Mass transport complexes and tectonic control on confined basin-floor submarine fans, Middle Eocene, south Spanish Pyrenees

Abstract The syn-tectonic deep-marine Ainsa fans (Eocene of the Ainsa basin, Spanish Pyrenees) were confined by lateral thrust ramps and influenced by intra-basinal growth anticlines. Mass transport complexes (MTCs) constitute a major component of the stratigraphy and represent an integral part of the evolution and depositional style of the deep-marine clastics. Using an integrated study of outcrop data from sedimentary logs and mapping, with core data from eight wells and micropalaeontological and palynomorph analyses, we demonstrate the lateral step-wise migration of sandy channelized submarine fans, as a foreland-propagating clastic wedge on a time-scale of hundreds of thousands of years. The deep-marine expression of the inferred tectonic pulses began with the large-scale basin-slope collapse as sediment slides and debris flows that formed much of the seafloor topography for each fan and contributed to their lateral confinement. The uppermost slope and any shelf-edge, including the narrow shelf, then collapsed, redepositing unconsolidated sands and gravels into deep water. This is overlain by an interval of mainly channelized and amalgamated sandy deposits, passing up into several tens of metres of less confined, non-amalgamated, medium- and thin-bedded, finer grained sands and marls. These deposits represent the phase of most active fan growth, initially by erosional channel development, sediment bypass and backfill (in several cycles), giving way to non-channelized, finer grained sandy deposition, interpreted as a response to the flushing out of the coarser clastics from the coastal and near coastal fluvial systems. During this latter stage in active fan growth and when sediment accumulation rates probably remained high, the degraded submarine slope was regraded and healed by finer grained depositional events. The high amount of woody material and the high non-marine palynomorph signal in these sandy deposits suggest direct river input as both turbidity currents and hyperpycnal flows for the silty marls. In the upper few metres, a thinning-and-fining-upward sequence shows a return to background marl deposition, representing fan abandonment. Many sequences are overlain by intraformational sediment slides that attest to the increasing seafloor gradients associated with the regrading and healing stage in slope development. These organized, predictable vertical sedimentary sequences provide a testable generic model for submarine fan development where fan growth is strongly influenced by tectonic processes.
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An annual cycle of biomass and productivity of wild celery (Vallisneria americana) was studied in Kings Bay, FL, USA. In situ growth rates were measured monthly between March 2001 and June 2002 in high-density stands, using a modified hole-punching technique, and applied to shoot density data to obtain areal estimates of production. Mean shoot density varied greatly over the study period, ranging between 200 and 800 shoots m À2. Mean total biomass ranged between 162 and 1013 g m À2 , with aboveground material comprising, on average, 70% of total biomass. Total annual estimated production of new attached shoots was 519 g m À2. Leaf growth rates peaked at >50 mg shoot À1 d À1 , and mass-specific leaf growth ranged 0.6–1.8% d À1. Annually, individual shoots produced 7.4 g of leaf material and completely replaced standing leaf biomass 3.5 times. Areal leaf production was highest in late spring/summer of 2001, and ranged between 3.6 and 23.0 g m À2 d À1. Annual total leaf production was 2704 g m À2. Seasonality was not apparent in most variables monitored monthly; only 1 of the 64 relationships we examined between environmental variables (nutrients, chlorophyll a, and irradiance) and Vallisneria biological variables were significant, with relative growth rate increasing linearly with irradiance. Peak biomass and productivity of Vallisneria in Kings Bay were high compared to literature values for other Vallisneria populations as well as global averages for well-studied seagrasses, emphasizing the potential importance of Vallisneria to whole ecosystem functioning in springs, lakes, and oligohaline reaches of many estuaries. Published by Elsevier B.V.
Mining Competitors from Large Unstructured Datasets

In any competitive business, success is based on the ability to make an item more appealing to customers than the competition. A number of questions arise in the context of this task: how do we formalize and quantify the competitiveness between two items? Who are the main competitors of a given item? What are the features of an item that most affect its competitiveness? Despite the impact and relevance of this problem to many domains, only a limited amount of work has been devoted toward an effective solution. In this paper, we present a formal definition of the competitiveness between two items, based on the market segments that they can both cover. Our evaluation of competitiveness utilizes customer reviews, an abundant source of information that is available in a wide range of domains. We present efficient methods for evaluating competitiveness in large review datasets and address the natural problem of finding the top-k competitors of a given item. Finally, we evaluate the quality of our results and the scalability of our approach using multiple datasets from different domains.
Neonatal Infection and 5-year Neurodevelopmental Outcome of Very Preterm Infants

OBJECTIVE: To determine whether neonatal infections are associated with a higher risk of adverse neurodevelopment at 5 years of age in a population-based cohort of very preterm children. METHODS: We included all live births between 22 and 32 weeks of gestation, from 9 regions in France, in 1997 (EPIPAGE study). Of the 2665 live births, 2277 were eligible for a follow-up evaluation at 5 years of age: 1769 had a medical examination and 1495 underwent cognitive assessment. Cerebral palsy and cognitive impairment were studied as a function of early-onset sepsis (EOS) and late-onset sepsis (LOS), after adjustment for potential confounding factors, in multivariate logistic regression models. RESULTS: A total of 139 (5%) of the 2665 live births included in the study presented with EOS alone (without associated LOS), 752 (28%) had LOS alone (without associated EOS), and 64 (2%) displayed both EOS and LOS. At 5 years of age, the frequency of cerebral palsy was 9% (157 of 1769) and that of cognitive impairment was 12% (177 of 1495). The frequency of cerebral palsy was higher in infants with isolated EOS (odds ratio [OR]: 1.70 [95% confidence interval (CI): 0.84−3.45]) or isolated LOS (OR: 1.71 [95% CI: 1.14−2.56]) than in uninfected infants, and this risk was even higher in cases of combined EOS and LOS (OR: 2.33 [95% CI: 1.02−5.33]). There was no association between neonatal infection and cognitive impairment. CONCLUSIONS: Neonatal infections in these very preterm infants were associated with a higher risk of cerebral palsy at the age of 5 years, particularly in infants presenting with both EOS and LOS.
Neogene sedimentary deformation in the Chilean forearc and implications for Andean basin development, seismicity and uplift

Neogene sediments in the northern Chilean forearc display a wide range of near syndepositional structures. Analysis of the origin and distribution of these structures in space and time offers new insights into the development of the forearc basins. The structures are described in detail and show many features associated with soft-sediment deformation, pseudo-diapirism and slope failure. Synsedimentary deformation reached a peak in the Late Miocene to Early Pliocene while the sediments were saturated in a largely plastic state, and many of the structures were probably triggered by seismic shock. Late-stage tilting of the forearc generated shear stresses in the sediments leading to slumping and sliding. Base-level revision and drainage incision led to sediment bypass and cessation of lacustrine sedimentation that was not necessarily linked to climate change. Compaction and dewatering of the basins caused transition of the sediments from a plastic to a brittle state. The age and distribution of structures associated with seismicity appears to correlate with increasing subduction erosion and westward drift of South America but not with basin subsidence, shortening rates or plate convergence. This suggests that upper crustal deformation is at least partly decoupled from plate movement.
Hypolimnetic oxidation rates in Lake Superior: Role of dissolved organic material on the lake's carbon budget

On average, the water column of Lake Superior is undersaturated with respect to dissolved oxygen and supersaturated with respect to carbon dioxide during the summer‐stratified period. On the basis of temporal changes in water column dissolved oxygen, we calculate rates of oxygen consumption that range from 0.19 to 0.75 mmol m−3 d−1. These rates are a factor of 5–10 times larger than can be supported by the particulate carbon settling rates and benthic oxygen consumption rates. In addition, on the basis of the limited information available, dissolved allochthonous carbon inputs are insufficient to account for the calculated rates of carbon oxidation. Rates of nitrate and total CO2 ΣCO2) production are 0.019 ± 0.012 and 0.13 ± 0.06 mmol m−3 d−1, respectively, and are consistent with the oxidation of a dissolved organic component that is similar in composition (C :N ratio) to the settling particulate material. Previously published estimates of total primary production were smaller but similar in magnitude to our integrated water column respiration rates. We interpret the observed imbalance between particulate carbon delivered to the deep lake and the calculated rate of carbon oxidation to be the result of the decomposition of dissolved organic carbon that appears to have both an autochthonous and an allochthonous component.
Tracing modern environmental conditions to their roots in early mining, metallurgy, and settlement in Gladhammar, southeast Sweden: Vegetation and pollution history outside the traditional Bergslagen mining region

We present results from a multidisciplinary project using lake sediment as a natural archive in combination with archaeology to investigate the earliest history of the Gladhammar mining area, southeastern Sweden. The aim was to identify and trace human impacts on the landscape, specifically in connection with settlement and metal production. Sediment records from two lakes linked to different processes in metal production were analyzed; Tjursbosjön down-slope of the mining area and Hyttegöl situated downstream of an excavated blast furnace, 1.8 km from the mines. The sediment analyses included multi-element geochemistry (WD-XRF), stable lead isotopes, pollen, and charcoal. Although historical documents record activities beginning in AD 1526, the archaeological study found indications that mining and metal production likely predated this period. The known historical period is well reflected in the sediment records, such as a 500-fold increase in copper, stream erosion, loss of forest cover and an expansion in agriculture. More importantly, already in the 12th–13th centuries, there was a 2- to 10-fold increase in lead, copper, and charcoal particles and evidence of erosion linked to the establishment of a blast furnace. Lead isotopes reveal a change from natural conditions to an input of lead from regional ores as early as the 9th–10th centuries. Settlement in the form of agriculture can be seen from 2000 BP. This sediment evidence of early mining or metallurgy during the 9th–15th centuries is supported by a few radiocarbon dates from the excavated mining fields, which on their own were considered as vague or improbable outliers by archaeologists.
Muscle dynamics in skipjack tuna: timing of red muscle shortening in relation to activation and body curvature during steady swimming.

Cyclic length changes in the internal red muscle of skipjack tuna (Katsuwonus pelamis) were measured using sonomicrometry while the fish swam in a water tunnel at steady speeds of 1.1-2.3 L s(-)(1), where L is fork length. These data were coupled with simultaneous electromyographic (EMG) recordings. The onset of EMG activity occurred at virtually the same phase of the strain cycle for muscle at axial locations between approximately 0.4L and 0.74L, where the majority of the internal red muscle is located. Furthermore, EMG activity always began during muscle lengthening, 40-50 ° prior to peak length, suggesting that force enhancement by stretching and net positive work probably occur in red muscle all along the body. Our results support the idea that positive contractile power is derived from all the aerobic swimming muscle in tunas, while force transmission is provided primarily by connective tissue structures, such as skin and tendons, rather than by muscles performing negative work. We also compared measured muscle length changes with midline curvature (as a potential index of muscle strain) calculated from synchronised video image analysis. Unlike contraction of the superficial red muscle in other fish, the shortening of internal red muscle in skipjack tuna substantially lags behind changes in the local midline curvature. The temporal separation of red muscle shortening and local curvature is so pronounced that, in the mid-body region, muscle shortening at each location is synchronous with midline curvature at locations that are 7-8 cm (i.e. 8-10 vertebral segments) more posterior. These results suggest that contraction of the internal red muscle causes deformation of the body at more posterior locations, rather than locally. This situation represents a unique departure from the model of a homogeneous bending beam, which describes red muscle strain in other fish during steady swimming, but is consistent with the idea that tunas produce thrust by motion of the caudal fin rather than by undulation of segments along the body.