Miracle-dz/UniFAR-FTUs huggingface dataset:
Comparison of 5 different remifentanil strategies against myocardial ischemia-reperfusion injury.

OBJECTIVE The purpose of this study was to investigate the effects of various remifentanil strategies (preconditioning, postconditioning, or continuous infusion) against myocardial ischemia-reperfusion injury. DESIGN An in vitro experimental study using the Langendorff system. SETTING A university research laboratory. PARTICIPANTS Male Sprague-Dawley rats (each n = 9). INTERVENTIONS Five different remifentanil strategies were performed in isolated rat hearts as follows: remifentanil preconditioning (R-Pre), remifentanil postconditioning (R-Post), ischemic targeting remifentanil (R1), reperfusion targeting remifentanil (R2), or both ischemic and reperfusion targeting remifentanil (R3). Infarct size and cardiodynamics were compared. MEASUREMENT AND MAIN RESULTS The infarct-risk volume ratio in groups R-Pre (13.7% ± 9.9%), R-Post (13.7% ± 12.3%), and R3 (12.6% ± 6.1%) were decreased significantly compared with the untreated control hearts (32.9% ± 11.1%, p < 0.01). There was no significant difference in the left ventricular-developed pressure (LVDP) recovery after reperfusion between the control (43.6% ± 14.5%) and R-Pre (34.8% ± 12.9%, p > 0.05) groups after reperfusion. However, the LVDP recovery in R-Post (21.6% ± 7.7%, p < 0.05), R1 (16.7% ± 19.8%, p < 0.01), R2 (22.2% ± 13.9%, p < 0.05), and R3 (16.2% ± 7.8%, p < 0.01) was decreased significantly compared with control hearts. There was no significant difference in the recovery of dP/dt(max) after reperfusion between the R-Pre (42.0% ± 16.9%) and control groups (39.0% ± 15.4%, p > 0.05), whereas the dP/dt(max) in R3 group (16.9% ± 9.0%) was decreased significantly compared with R-Pre (p < 0.05). CONCLUSIONS Preconditioning or postconditioning by remifentanil and the continuous infusion of remifentanil effectively reduce myocardial infarction, whereas reperfusion targeting ischemic targeting or reperfusion targeting remifentanil does not. Remifentanil preconditioning better preserves myocardial function, especially LVDP, than other remifentanil strategies.
Demyelinating and Nondemyelinating Strains of Mouse Hepatitis Virus Differ in Their Neural Cell Tropism

ABSTRACT Some strains of mouse hepatitis virus (MHV) can induce chronic inflammatory demyelination in mice that mimics certain pathological features of multiple sclerosis. We have examined neural cell tropism of demyelinating and nondemyelinating strains of MHV in order to determine whether central nervous system (CNS) cell tropism plays a role in demyelination. Previous studies demonstrated that recombinant MHV strains, isogenic other than for the spike gene, differ in the extent of neurovirulence and the ability to induce demyelination. Here we demonstrate that these strains also differ in their abilities to infect a particular cell type(s) in the brain. Furthermore, there is a correlation between the differential localization of viral antigen in spinal cord gray matter and that in white matter during acute infection and the ability to induce demyelination later on. Viral antigen from demyelinating strains is detected initially in both gray and white matter, with subsequent localization to white matter of the spinal cord, whereas viral antigen localization of nondemyelinating strains is restricted mainly to gray matter. This observation suggests that the localization of viral antigen to white matter during the acute stage of infection is essential for the induction of chronic demyelination. Overall, these observations suggest that isogenic demyelinating and nondemyelinating strains of MHV, differing in the spike protein expressed, infect neurons and glial cells in different proportions and that differential tropism to a particular CNS cell type may play a significant role in mediating the onset and mechanisms of demyelination.
Designing attentive interfaces

In this paper, we propose a tentative framework for the classification of Attentive Interfaces, a new category of user interfaces. An Attentive Interface is a user interface that dynamically prioritizes the information it presents to its users, such that information processing resources of both user and system are optimally distributed across a set of tasks. The interface does this on the basis of knowledge --- consisting of a combination of measures and models --- of the past, present and future state of the user's attention, given the availability of system resources. We will show how the Attentive Interface provides a natural extension to the windowing paradigm found in Graphical User Interfaces. Our taxonomy of Attentive Interfaces allows us to identify classes of user interfaces that would benefit most from the ability to sense, model and optimize the user's attentive state. In particular, we show how systems that influence user workflow in concurrent task situations, such as those involved with management of multiparty communication, may benefit from such facilities.
Fast and scalable prediction of local energy at grain boundaries: machine-learning based modeling of first-principles calculations

We propose a new scheme based on machine learning for the efficient screening in grain-boundary (GB) engineering. A set of results obtained from first-principles calculations based on density functional theory (DFT) for a small number of GB systems is used as a training data set. In our scheme, by partitioning the total energy into atomic energies using a local-energy analysis scheme, we can increase the training data set significantly. We use atomic radial distribution functions and additional structural features as atom descriptors to predict atomic energies and GB energies simultaneously using the least absolute shrinkage and selection operator, which is a recent standard regression technique in statistical machine learning. In the test study with fcc-Al [110] symmetric tilt GBs, we could achieve enough predictive accuracy to understand energy changes at and near GBs at a glance, even if we collected training data from only 10 GB systems. The present scheme can emulate time-consuming DFT calculations for large GB systems with negligible computational costs, and thus enable the fast screening of possible alternative GB systems.
Analysis of Endoglin Expression in Normal Brain Tissue and in Cerebral Arteriovenous Malformations

Background and Purpose A high incidence of arteriovenous malformations (AVMs) is associated with hereditary hemorrhagic telangiectasia type 1. Endoglin, the gene mutated in this disorder, is expressed at reduced levels on blood vessels of these patients. Since endoglin is a component of the transforming growth factor-&bgr; receptor complex critical for vascular development and homeostasis, we determined its expression in sporadic cerebral AVMs and in normal brain vessels. Methods Twenty cerebral AVMs and 10 normal brain samples were analyzed for endoglin, platelet endothelial cell adhesion molecule 1 (PECAM-1), &agr;-smooth muscle cell actin, vimentin, and desmin by immunohistochemistry. Results In normal brain, endoglin was found not only on the endothelium of all vessels but also on the adventitial layer of arteries and arterioles. In cerebral AVMs, the numerous vessels present expressed endoglin on both endothelium and adventitia. Arterialized veins, identified by lack of elastin and uneven thickness of smooth muscle cells, revealed endoglin-positive mesenchymal cells in the adventitia and perivascular connective tissue. These cells were fibroblasts since they expressed vimentin but not actin and/or desmin. Conclusions This is the first report of endoglin expression on adventitia of normal brain arteries and on arterialized veins in cerebral AVMs. Increasing numbers of endoglin-positive endothelial and adventitial cells were seen in sporadic cerebral AVMs, but endoglin density was normal. Thus, it is not involved in the generation of these lesions. However, the presence of endoglin on fibroblasts in the perivascular stroma suggests an active role for this protein in vascular remodeling in response to increased blood flow and shear stress.
Weld pool development during GTA and laser beam welding of Type 304 stainless steel; Part I - theoretical analysis

A computational and experimental study was carried out to quantitatively understand the influence of the heat flow and the fluid flow in the transient development of the weld pool during gas tungsten arc (GTA) and laser beam welding of Type 304 stainless steel. Stationary gas tungsten arc and laser beam welds were made on two heats of Type 304 austenitic stainless steels containing 90 ppm sulfur and 240 ppm sulfur. A transient heat transfer model was utilized to simulate the heat flow and fluid flow in the weld pool. In this paper, the results of the heat flow and fluid flow analysis are presented.
Attentional capture by signals of threat

Attention can be captured automatically by events that are physically salient. Similarly, emotional stimuli are known to be prioritised by the visual system because of their behavioural significance. The present study investigated whether a neutral stimulus which became associated with fear captured attention in visual search. Using a fear-conditioning procedure, one stimulus was repeatedly combined with an electrical shock (CS+), whereas another stimulus with identical physical features was never combined with a shock (CS−). Following conditioning, participants had to search for a target; while on some trials, either an irrelevant CS+ or CS− stimulus was present. The results show that the presence of an irrelevant distractor that was previously associated with fear slowed a search more than a distractor without fear association. The current results indicate that learned fear associations have the ability to capture our attention even if we try to ignore them.
GERM BANKING: BET‐HEDGING AND VARIABLE RELEASE FROM EGG AND SEED DORMANCY

Many species produce eggs or seeds that refrain from hatching despite developmental preparedness and favorable environmental conditions. Instead, these propagules hatch in intervals over long periods. Such variable hatch or germination tactics may represent bet‐hedging against future catastrophes. Empiricists have independently recognized these approaches in diverse species. Terms such as seed banking, delayed egg hatching, and embryonic diapause have been used to describe these tactics, but connections between fields of study have been rare. Here we suggest a general term, germ banking, to incorporate all previous terms, unifying many seemingly disparate biological strategies under a single definition. We define the phenomenon of germ banking and use several biological examples to illustrate it. We then discuss the different causes of variation in emergence timing, delineate which constitute germ banking, and distinguish between germ banking and optimal timing of diapause. The wide‐ranging consequences of germ banking are discussed, including modification of the age structure of a population, the alteration of microevolutionary dynamics, the migration of alleles from the past, the maintenance of genetic and species diversity, and the promotion of species coexistence. We end by posing questions to direct future research.
Motion Estimation and Classification in Compressive Sensing from Dynamic Measurements

Temporal artifacts due to sequential acquisition of measurements in compressed sensing manifest differently from a conventional optical camera. We propose a framework for dynamic scenes to estimate the relative global motion between camera and scene from measurements acquired using a compressed sensing camera. We follow an adaptive block approach where the resolution of the estimated motion path depends on the motion trajectory. To underline the importance of the proposed motion estimation framework, we develop a face recognition algorithm in the compressive sensing domain by factoring in the time-varying nature of the acquisition process.
Morphological studies of hypomineralized enamel of rat pups on calcium‐deficient diet, and of its changes after return to normal diet

Background: Micro‐hardness investigations have shown that rat pups nursed by mothers on a low calcium diet and weaned with the maternal calcium‐deficient diet develop hypomineralized enamel. The inorganic and organic components of this enamel, their relationships, and their changes after return to normal diet have been studied by light and electron microscopy.
Distinct cellular expression of beta I- and beta II-subspecies of protein kinase C in rat cerebellum

Immunohistochemical and biochemical studies with subspecies-specific antibodies have revealed that beta I- and beta II-subspecies of protein kinase C, which result from alternative splicing of a single RNA transcript, show different regional expression in rat CNS. In the cerebellar cortex, beta I-subspecies is localized mainly in the granular layer, whereas beta II-subspecies is found predominantly in the molecular layer, most apparently in the presynaptic nerve endings that terminate at Purkinje cells. These distribution patterns are in sharp contrast to that of gamma-subspecies, which is most abundant within the Purkinje cells. The different patterns of expression imply that the multiple subspecies of protein kinase C may each have a specific function in modulating the neuronal activity of particular cell types.
DO WHEEZING INFANTS HAVE IMPAIRED LUNG FUNCTION AS COMPARED WITH MATCHED HEALTHY INFANTS ?

1. Abstract 2. Introduction: Questions which deserve an answer 3. Do wheezing infants have impaired lung function as compared with matched healthy infants? 4. Does functional impairment precedes the first episode of wheeze? 5. Is the pre-morbid impaired infant lung function a risk factor for asthma later in life? Lessons from cohort studies 6. The role of bronchial hyper-responsiveness 7. What risk factors are related with this pre-morbid low lung function? 7.1. Preterm birth and intrauterine growth restriction 7.2. Prenatal tobacco exposure 7.3. Gen polymorphisms 7.4. Atopy and inflammation 7.5. Other risks factors 8. References
Reasoning about recursively defined data structures

A decision algorithm is given for the quantifier-free theory of recursively defined data structures which, for a conjunction of length n, decides its satisfiability in time linear in n. The first-order theory of recursively defined data structures, in particular the first-order theory of LISP list structure (the theory of CONS, CAR, CDR), is shown to be decidable but not elementary recursive.
c-Cbl Is Involved in Met Signaling in B Cells and Mediates Hepatocyte Growth Factor-Induced Receptor Ubiquitination

Hepatocyte growth factor/scatter factor (HGF) and its receptor tyrosine kinase Met are key regulators of epithelial motility and morphogenesis. Recent studies indicate that the HGF/Met pathway also plays a role in B cell differentiation, whereas uncontrolled Met signaling may lead to B cell neoplasia. These observations prompted us to explore HGF/Met signaling in B cells. In this study, we demonstrate that HGF induces strong tyrosine phosphorylation of the proto-oncogene product c-Cbl in B cells and increases Cbl association with the Src family tyrosine kinases Fyn and Lyn, as well as with phosphatidylinositol-3 kinase and CrkL. In addition, we demonstrate that c-Cbl mediates HGF-induced ubiquitination of Met. This requires the juxtamembrane tyrosine Y1001 (Y2) of Met, but not the multifunctional docking site (Y14/15) or any additional C-terminal tyrosine residues (Y13–16). In contrast to wild-type c-Cbl, the transforming mutants v-Cbl and 70Z/3 Cbl, which lack the ubiquitin ligase RING finger domain, suppress Met ubiquitination. Our findings identify c-Cbl as a negative regulator of HGF/Met signaling in B cells, mediating ubiquitination and, consequently, proteosomal degradation of Met, and suggest a role for Cbl in Met-mediated tumorigenesis.
Direct protein introduction into plant cells using a multi-gas plasma jet

Protein introduction into cells is more difficult in plants than in mammalian cells, although it was reported that protein introduction was successful in shoot apical meristem and leaves only together with a cell-penetrating peptide. In this study, we tried to introduce superfolder green fluorescent protein (sGFP)-fused to adenylate cyclase as a reporter protein without a cell-penetrating peptide into the cells of tobacco leaves by treatment with atmospheric non-thermal plasmas. For this purpose, CO2 or N2 plasma was generated using a multi-gas plasma jet. Confocal microscopy indicated that sGFP signals were observed inside of leaf cells after treatment with CO2 or N2 plasma without substantial damage. In addition, the amount of cyclic adenosine monophosphate (cAMP) formed by the catalytic enzyme adenylate cyclase, which requires cellular calmodulin for its activity, was significantly increased in leaves treated with CO2 or N2 plasma, also indicating the introduction of sGFP-fused adenylate cyclase into the cells. These results suggested that treatment with CO2 or N2 plasma could be a useful technique for protein introduction into plant tissues.
Properties of pyranose dehydrogenase purified from the litter‐degrading fungus Agaricus xanthoderma

We purified an extracellular pyranose dehydrogenase (PDH) from the basidiomycete fungus Agaricus xanthoderma using ammonium sulfate fractionation and ion‐exchange and hydrophobic interaction chromatography. The native enzyme is a monomeric glycoprotein (5% carbohydrate) containing a covalently bound FAD as its prosthetic group. The PDH polypeptide consists of 575 amino acids and has a molecular mass of 65 400 Da as determined by MALDI MS. On the basis of the primary structure of the mature protein, PDH is a member of the glucose–methanol–choline oxidoreductase family. We constructed a homology model of PDH using the 3D structure of glucose oxidase from Aspergillus niger as a template. This model suggests a novel type of bi‐covalent flavinylation in PDH, 9‐S‐cysteinyl, 8‐α‐N3‐histidyl FAD. The enzyme exhibits a broad sugar substrate tolerance, oxidizing structurally different aldopyranoses including monosaccharides and oligosaccharides as well as glycosides. Its preferred electron donor substrates are d‐glucose, d‐galactose, l‐arabinose, and d‐xylose. As shown by in situ NMR analysis, d‐glucose and d‐galactose are both oxidized at positions C2 and C3, yielding the corresponding didehydroaldoses (diketoaldoses) as the final reaction products. PDH shows no detectable activity with oxygen, and its reactivity towards electron acceptors is rather limited, reducing various substituted benzoquinones and complexed metal ions. The azino‐bis‐(3‐ethylbenzthiazolin‐6‐sulfonic acid) cation radical and the ferricenium ion are the best electron acceptors, as judged by the catalytic efficiencies (kcat/Km). The enzyme may play a role in lignocellulose degradation.
Enhanced Hypothalamic Glucose Sensing in Obesity: Alteration of Redox Signaling

OBJECTIVE Recent data demonstrated that glucose sensing in different tissues is initiated by an intracellular redox signaling pathway in physiological conditions. However, the relevance of such a mechanism in metabolic disease is not known. The aim of the present study was to determine whether brain glucose hypersensitivity present in obese Zücker rats is related to an alteration in redox signaling. RESEARCH DESIGN AND METHODS Brain glucose sensing alteration was investigated in vivo through the evaluation of electrical activity in arcuate nucleus, changes in reactive oxygen species levels, and hypothalamic glucose-induced insulin secretion. In basal conditions, modifications of redox state and mitochondrial functions were assessed through oxidized glutathione, glutathione peroxidase, manganese superoxide dismutase, aconitase activities, and mitochondrial respiration. RESULTS Hypothalamic hypersensitivity to glucose was characterized by enhanced electrical activity of the arcuate nucleus and increased insulin secretion at a low glucose concentration, which does not produce such an effect in normal rats. It was associated with 1) increased reactive oxygen species levels in response to this low glucose load, 2) constitutive oxidized environment coupled with lower antioxidant enzyme activity at both the cellular and mitochondrial level, and 3) overexpression of several mitochondrial subunits of the respiratory chain coupled with a global dysfunction in mitochondrial activity. Moreover, pharmacological restoration of the glutathione hypothalamic redox state by reduced glutathione infusion in the third ventricle fully reversed the cerebral hypersensitivity to glucose. CONCLUSIONS The data demonstrated that obese Zücker rats' impaired hypothalamic regulation in terms of glucose sensing is linked to an abnormal redox signaling, which originates from mitochondria dysfunction.
Does Dietary Intake by Tehranian Adults Align with the 2005 Dietary Guidelines for Americans? Observations from the Tehran Lipid and Glucose Study

The aim of this study was to compare dietary intakes by Tehranian adults with recent dietary guidelines for the Americans. The study made a cross-sectional assessment of the dietary patterns of Tehranian adults using a validated food-frequency questionnaire. It included 2,510 subjects (1,121 men and 1,389 women) aged 19-70 years. They were the participants of the third follow-up survey of the Tehran Lipid and Glucose Study (2005-2008). The dietary patterns were assessed using the latest World Health Organization (WHO)'s nutritional goals and Dietary Guidelines for the Americans Adherence Index (DGAI) 2005. The mean [standard deviation (SD)] DGAI score for this population was 8.31 (1.9). Participants in the highest quartile category of DGAI were more likely to be female, older, non-smoking, and physically active than those in the lowest quartile category (p<0.001). Percentage of participants meeting the DGA recommendations waslow, especially for starchy vegetables (2.3%), orange vegetables (16.2%), lean meat (9.2%), grains (12.0%), and legumes (6.4%). Over-consumption of grains was observed in almost half of the participants while approximately 20% of the subjects over-consumed milk and meat groups. Intakes of most nutrients examined were significantly associated with the DGAI 2005 score (p<0.001), except for vitamin E, vitamin B12, and vitamin D. The least adherence with the WHO goals was observed with n-3 PUFAs, sodium, fruit, and vegetable intakes. The results revealed that the dietary patterns of most Tehranian adults did not comply with the 2005 DGA and nutritional goals of WHO/Food and Agriculture Organization.
Blockade of Lyn kinase upregulates both canonical and non-canonical TLR-3 pathways in THP-1 monocytes exposed to human cytomegalovirus.

Regulation of monocyte response to human cytomegalovirus (HCMV) occurs via activation of receptors that elicit innate antiviral effects and later T-cell responses. Our previous data (Yew et al., 2010) demonstrated that human monocyte scavenger receptor A type 1 (SR-A1) are required for sensing of HCMV by endosomal toll-like receptors (TLRs)-3 and -9, which in turn induce critical pro-inflammatory cytokines. However, it remains unclear which subcellular molecules associated with SR-A1 lead to downstream activation of TLR-3 and/or TLR-9 signaling pathways. Herein we report that Lyn kinase, associated physically and functionally with SR-A for low density lipoprotein (LDL) recognition, acts as a key SR-A1-induced kinase that plays a critical role in TLR-3/9 signal transduction upon HCMV exposure to THP-1 monocytes. We found that disruption of the SR-A1 signal transduction through molecular inhibition by Lyn kinase oligonucleotides not only blocks the activation of downstream TLR-9 pathway but also alters the downstream TLR-3 pathway. In particular, Lyn kinase oligonucleotides resulted in decreased expression of TLR-9-induced tumor necrosis factor alpha (TNF-α) but strongly upregulated canonical TLR-3-induced interferon beta (IFN-β) and non-canonical TLR-3-induced NF-κB-dependent p35 (35kDa) subunit of interleukin 12 (IL-12p35) gene transcription. Thus, the observed shift away from TNF-α to robust IFN-β and IL-12p35 induction may offer opportunities for therapeutic interventions.