Miracle-dz/UniFAR-FTUs huggingface dataset:
eFSM—A Novel Online Neural-Fuzzy Semantic Memory Model

Fuzzy rule-based systems (FRBSs) have been successfully applied to many areas. However, traditional fuzzy systems are often manually crafted, and their rule bases that represent the acquired knowledge are static and cannot be trained to improve the modeling performance. This subsequently leads to intensive research on the autonomous construction and tuning of a fuzzy system directly from the observed training data to address the knowledge acquisition bottleneck, resulting in well-established hybrids such as neural-fuzzy systems (NFSs) and genetic fuzzy systems (GFSs). However, the complex and dynamic nature of real-world problems demands that fuzzy rule-based systems and models be able to adapt their parameters and ultimately evolve their rule bases to address the nonstationary (time-varying) characteristics of their operating environments. Recently, considerable research efforts have been directed to the study of evolving Tagaki-Sugeno (T-S)-type NFSs based on the concept of incremental learning. In contrast, there are very few incremental learning Mamdani-type NFSs reported in the literature. Hence, this paper presents the evolving neural-fuzzy semantic memory (eFSM) model, a neural-fuzzy Mamdani architecture with a data-driven progressively adaptive structure (i.e., rule base) based on incremental learning. Issues related to the incremental learning of the eFSM rule base are carefully investigated, and a novel parameter learning approach is proposed for the tuning of the fuzzy set parameters in eFSM. The proposed eFSM model elicits highly interpretable semantic knowledge in the form of Mamdani-type if-then fuzzy rules from low-level numeric training data. These Mamdani fuzzy rules define the computing structure of eFSM and are incrementally learned with the arrival of each training data sample. New rules are constructed from the emergence of novel training data and obsolete fuzzy rules that no longer describe the recently observed data trends are pruned. This enables eFSM to maintain a current and compact set of Mamdani-type if-then fuzzy rules that collectively generalizes and describes the salient associative mappings between the inputs and outputs of the underlying process being modeled. The learning and modeling performances of the proposed eFSM are evaluated using several benchmark applications and the results are encouraging.
Probabilistic Estimates of Transient Climate Sensitivity Subject to Uncertainty in Forcing and Natural Variability

In this paper, the authors address the impact of uncertainty on estimates of transient climate sensitivity (TCS) of the globally averaged surface temperature, including both uncertainty in past forcing and internal variability in the climate record. This study provides a range of probabilistic estimates of the TCS that combine these two sources of uncertainty for various underlying assumptions about the nature of the uncertainty. The authors also provide estimates of how quickly the uncertainty in the TCS may be expected to diminish in the future as additional observations become available. These estimates are made using a nonlinear Kalman filter coupled to a stochastic, global energy balance model, using the filter and observations to constrain the model parameters. This study verifies that model and filter are able to emulate the evolution of a comprehensive, state-of-the-art atmosphere‐ocean general circulation model and to accurately predict the TCS of the model, and then apply the methodology to observed temperature and forcing records of the twentieth century. For uncertainty assumptions best supported by global surface temperature data up to the present time, this paper finds a most likely present-day estimate of the transient climate sensitivity to be 1.6 K, with 90% confidencetheresponsewill fallbetween1.3and2. 6 K,anditisestimatedthat thisintervalmaybe45%smaller by the year 2030. The authors calculate that emissions levels equivalent to forcing of less than 475 ppmv CO2 concentration are needed to ensure that the transient temperature response will not exceed 2 K with 95% confidence. This is an assessment for the short-to-medium term and not a recommendation for long-term stabilization forcing; the equilibrium temperature response to this level of CO2 may be much greater. The flat temperaturetrendofthelastdecadehasadetectablebutsmallinfluenceonTCS.Thisstudydescribeshowthe results vary if differentuncertainty assumptions are madeand shows they are robust to variations in the initial prior probability assumptions.
Aromaticity and ring currents.

Accepting a commission to review progress in the subject embodied in our title is, perhaps, to take up something of a ‘poisoned chalice’. One of us, contributing on this same topic more than 20 years ago at the 1979 International Symposium on Aromaticity in Dubrovnik, wrote1 “A cynic would say that there are actually only two difficulties in discussing the subject of ‘aromaticity’ and ‘ring currents’sdeciding what is meant by ‘ring current’, and assigning a meaning to the term ‘aromaticity’! ” That comment, though ostensibly facetious, had serious intent: it did encapsulate, with only a modicum of exaggeration, the problems that inherently beset any assessment such as the one attempted at Dubrovnik1 and in the present review. At the heart of the matter lies the undeniable fact that neither ring currents nor aromaticity are physical observables. Nevertheless, the intervening period has seen the ring-current idea, at least, become generally less controversial and more accepted than it once was. At the time of our opening quotation, one of us and Haigh had just published an exhaustive review2 of the ring-current concept covering the period up to about 1980sthe end of what might now be regarded as the era of semiempirical calculations in this field.2 This review2 (1979/1980) concluded that “the ‘ring current’ picture has proved itself . to have great power in rationalising, at least qualitatively, the magnetic properties of π-electron systems. It is so pictorial that one can almost feel what is happening when a [conjugated] molecule is subjected to a magnetic field. Whatever advances the future may bring, it may be that the favourite habitat of the ‘ring current’ will be that in which it was born and brought up, namely, that of semi-empirical π-electron theory”. In other words, these authors were sanguine that, at the time (ca. 1980), the ring-current idea was gently coming to the end of its natural, useful life. However, as recently as 1997, when reviewing progress concerning the status of the ring-current model during the decade and a half or so after 1980s a period in this field that we have dubbed3 ‘the ab initio era’sthe present authors3 were initially somewhat surprised to find themselves concluding that “the ‘ring-current’ idea has well survived the first 15 years of the ab initio era. ” Lazzeretti’s subsequent magnum opus4 on ring currents has more than confirmed this. By contrast, the sheer fact that in 2001sthe very first year of the 21st centurysthe American Chemical Society has seen fit to run this particular issue of Chemical Reviews shows that the concept of Aromaticity is as elusive as it ever was (see section II). There are three reasons for our not feeling obliged or inclined to present, in this review, an exhaustive, systematic, or historical critique of the ring-current concept itself. First, as we have just claimed, the idea of a ring current seems more secure now than it was 20 years ago, and it would appear that less apology or justification is needed for invoking it. Second, we ourselves have, in any case, only recently updated 1349 Chem. Rev. 2001, 101, 1349−1383
Principles and Design of a Zeeman–Sisyphus Decelerator for Molecular Beams

Abstract We explore a technique for decelerating molecules using a static magnetic field and optical pumping. Molecules travel through a spatially varying magnetic field and are repeatedly pumped into a weak‐field seeking state as they move towards each strong field region, and into a strong‐field seeking state as they move towards weak field. The method is time‐independent and so is suitable for decelerating both pulsed and continuous molecular beams. By using guiding magnets at each weak field region, the beam can be simultaneously guided and decelerated. By tapering the magnetic field strength in the strong field regions, and exploiting the Doppler shift, the velocity distribution can be compressed during deceleration. We develop the principles of this deceleration technique, provide a realistic design, use numerical simulations to evaluate its performance for a beam of CaF, and compare this performance to other deceleration methods.
HLA‐DRB1 associations in individuals with single and multiple clinically relevant red blood cell antibodies

A minority of red blood cell (RBC) alloantigen–exposed persons form antibodies. Responders are at high risk of developing additional antibodies upon subsequent transfusions. Several studies showed an association between particular HLA‐DRB1 phenotypes and the development of specific RBC antibodies. This study evaluates the presence of HLA‐DRB1 antigens in individuals with single or multiple RBC antibody specificities to explore whether the response against RBC antigens is associated with a summation of particular HLA‐DRB1 susceptibility antigens.
When Forgetting Preserves Memory

There has been a resurgence of interest in defining the circumstances leading to memory modifications. Studies have shown that reactivating a supposedly stable memory re-introduces a time-limited window of plasticity during which presentation of interfering material can cause long-term memory changes. The present study asks whether such memory changes can be prevented if people are instructed to forget the memory before the new material is encoded. Participants learned a set of objects. After 48 h, they were reminded of this learning episode, and learned another set of objects. Again 48 h later, they recalled the first (Exp. 1) or second set (Exp. 3). As shown previously, a reminder caused intrusions from the second set into recall of the first set. Here I show that the instruction to forget the first set significantly diminished intrusions from the second set, especially when the instruction was given before the new set was encoded in the second session. Experiment 2 suggests that the reduced intrusions were due to list segregation/isolation, rather than temporarily inhibited access to Set 1. Taken together, the study shows that the attempt to forget a memory can immunize it such that the presentation of interfering material has limited effects, and the memory can be recalled unchanged in the future. This is important when veridical memory is essential, such as in eyewitness testimonies.
Genetic Regulation of Bone Traits Is Influenced by Sex and Reciprocal Cross in F2 Progeny From GK and F344 Rats

A genome‐wide linkage analysis to identify quantitative trait loci (QTLs) for bone phenotypes was performed in an F2 intercross of inbred spontaneously type 2 diabetic GK and normoglycemic F344 rats (108 males and 98 females). The aim of the study was to locate genome regions with candidate genes affecting trabecular and cortical bone and to investigate the effects of sex and reciprocal cross. pQCT was used to determine tibial bone phenotypes in the F2 rats, comprising reciprocal crosses with divergent mitochondrial (mt) DNA. Sex and reciprocal cross‐separated QTL analyses were performed followed by assessment of specific interactions. Four genome‐wide significant QTLs linked to either cortical vBMD, tibia length, body length, or metaphyseal area were identified in males on chromosomes (chr) 1, 8, and 15. In females, three significant QTLs linked to cortical BMC or metaphyseal total vBMD were identified on chr 1 and 2. Several additional suggestive loci for trabecular and cortical traits were detected in both males and females. Four female‐specific QTLs on chr 2, 3, 5, and 10 and four reciprocal cross‐specific QTLs on chr 1, 10, and 18 were identified, suggesting that both sex and mt genotype influence the expression of bone phenotypes.
Cytoskeletal Changes Regulated by the PAK4 Serine/Threonine Kinase Are Mediated by LIM Kinase 1 and Cofilin*

PAK4 is the most recently identified member of the PAK family of serine/threonine kinases. PAK4 differs from other members of the PAK family in sequence and in many of its functions. Previously, we have shown that an important function of this kinase is to mediate the induction of filopodia in response to the Rho GTPase Cdc42. Here we show that PAK4 also regulates the activity of the protein kinase LIM kinase 1 (LIMK1). PAK4 was shown to interact specifically with LIMK1 in binding assays. Immune complex kinase assays revealed that both wild-type and constitutively active PAK4 phosphorylated LIMK1 even more strongly than PAK1, and activated PAK4 stimulated LIMK1's ability to phosphorylate cofilin. Immunofluorescence experiments revealed that PAK4 and LIMK1 cooperate to induce cytoskeletal changes in C2C12 cells. Furthermore, dominant negative LIMK1 and a mutant cofilin inhibited the specific cytoskeletal and cell shape changes that were induced in response to a recently characterized constitutively activated PAK4 mutant.
The acute effects of sleeper stretches on shoulder range of motion.

CONTEXT The deceleration phase of the throwing motion creates large distraction forces at the shoulder, which may result in posterior shoulder tightness and ensuing alterations in shoulder range of motion (ROM) and may result in an increased risk of shoulder injury. Researchers have hypothesized that various stretching options increase this motion, but few data on the effectiveness of treating such tightness are available. OBJECTIVE To evaluate the acute effects of "sleeper stretches" on shoulder ROM. DESIGN Descriptive with repeated measures. SETTING Biomechanics laboratory and 2 separate collegiate athletic training facilities. PATIENTS OR OTHER PARTICIPANTS Thirty-three National Collegiate Athletic Association Division I baseball players (15 pitchers, 18 position players; age = 19.8 +/- 1.3 years, height = 184.7 +/- 6.4 cm, mass = 84.8 +/- 7.7 kg) and 33 physically active male college students (age = 20.1 +/- 0.6 years, height = 179.6 +/- 6.6 cm, mass = 83.4 +/- 11.3 kg) who reported no recent participation (within 5 years) in overhead athletic activities. INTERVENTION(S) Range-of-motion measurements of the dominant shoulder were assessed before and after completion of 3 sets of 30-second passive sleeper stretches among the baseball players. The ROM measurements in the nonthrower group were taken using identical methods as those in the baseball group, but this group did not perform any stretch or movement between measurements. MAIN OUTCOME MEASURE(S) Internal and external glenohumeral rotation ROM and posterior shoulder motion (glenohumeral horizontal adduction). RESULTS In the baseball group, posterior shoulder tightness, internal rotation ROM, and external rotation ROM were -3.5 degrees +/- 7.7 degrees , 43.8 degrees +/- 9.5 degrees , and 118.6 degrees +/- 10.9 degrees , respectively, before the stretches and were -1.2 degrees +/- 8.8 degrees , 46.9 degrees +/- 9.8 degrees , and 119.2 degrees +/- 11.0 degrees , respectively, after the stretches. These data revealed increases in posterior shoulder motion (P = .01, effect size = 0.30) and in internal shoulder rotation (P = .003, effect size = 0.32) after application of the stretches. No other differences were observed in the baseball group, and no differences were noted in the nonthrower group. CONCLUSIONS Based on our results, the sleeper stretches produced a statistically significant acute increase in posterior shoulder flexibility. However, this change in motion may not be clinically significant.
Evidence for specific subunit distribution and interactions in the quaternary structure of α‐crystallin

The quaternary structure of α‐crystallin is dynamic, a property which has thwarted crystallographic efforts towards structural characterization. In this study, we have used collision‐induced dissociation mass spectrometry to examine the architecture of the polydisperse assemblies of α‐crystallin. For total α‐crystallin isolated directly from fetal calf lens using size‐based chromatography, the αB‐crystallin subunit was found to be preferentially dissociated from the oligomers, despite being significantly less abundant overall than the αA‐crystallin subunits. Furthermore, upon mixing molar equivalents of purified αA‐ and αB‐crystallin, the levels of their dissociation were found to decrease and increase, respectively, with time. Interestingly though, dissociation of subunits from the αA‐ and αB‐crystallin homo‐oligomers was comparable, indicating that strength of the αA:αA, and αB:αB subunit interactions are similar. Taken together, these data suggest that the differences in the number of subunit contacts in the mixed assemblies give rise to the disproportionate dissociation of αB‐crystallin subunits. Limited proteolysis mass spectrometry was also used to examine changes in protease accessibility during subunit exchange. The C‐terminus of αA‐crystallin was more susceptible to proteolytic attack in homo‐oligomers than that of αB‐crystallin. As subunit exchange proceeded, proteolysis of the αA‐crystallin C‐terminus increased, indicating that in the hetero‐oligomeric form this tertiary motif is more exposed to solvent. These data were used to propose a refined arrangement for the interactions of the α‐crystallin domains and C‐terminal extensions of subunits within the α‐crystallin assembly. In particular, we propose that the palindromic IPI motif of αB‐crystallin gives rise to two orientations of the C‐terminus. Proteins 2010. © 2010 Wiley‐Liss, Inc.
SQLite Optimization with Phase Change Memory for Mobile Applications

Given its pervasive use in smart mobile platforms, there is a compelling need to optimize the performance of sluggish SQLite databases. Popular mobile applications such as messenger, email and social network services rely on SQLite for their data management need. Those mobile applications tend to execute relatively short transactions in the autocommit mode for transactional consistency in databases. This often has adverse effect on the flash memory storage in mobile devices because the small random updates cause high write amplification and high write latency. In order to address this problem, we propose a new optimization strategy, called per-page logging (PPL), for mobile data management, and have implemented the key functions in SQLite/PPL. The hardware component of SQLite/PPL includes phase change memory (PCM) with a byte-addressable, persistent memory abstraction. By capturing an update in a physiological log record and adding it to the PCM log sector, SQLite/PPL can replace a multitude of successive page writes made to the same logical page with much smaller log writes done to PCM much more efficiently. We have observed that SQLite/PPL would potentially improve the performance of mobile applications by an order of magnitude while supporting transactional atomicity and durability.
Impaired erythrocyte filterability of spontaneously hypertensive rats: investigation by nickel filtration technique.

BACKGROUND Deformability of erythrocytes plays a key role in the impairment of the microcirculation in hypertension. However, erythrocyte deformability in spontaneously hypertensive rats (SHR) during development of hypertension has not been fully investigated so far. METHODS AND RESULTS Erythrocyte filterability (whole cell deformability) was investigated in relation to blood pressure measured by the tail-cuff method in SHR and age-matched Wistar-Kyoto rats (WKY), using a highly sensitive and reproducible nickel mesh filtration technique. Impaired erythrocyte filterability was marked (37.0+/-17.5%) in prehypertensive young SHR (7 weeks of age) and sustained (51.6+/-13.3%) in hypertensive mature SHR (18 weeks of age), when compared with that of age-matched WKY (62.1+/-7.2% in 7 weeks of age, P<0.005, and 71.1+/-3.9% in 18 weeks of age, P<0.005, respectively). This impairment in SHR could not be explained by the mean corpuscular volume or mean corpuscular hemoglobin concentration of erythrocytes, but the erythrocyte count was significantly (P<0.005) greater in SHR than in the age-matched WKY. CONCLUSIONS Although the precise mechanisms remain to be elucidated, markedly impaired erythrocyte filterability in SHR is considered to contribute to the development and maintenance of genetic hypertension. (Circ J 2010; 74: 129 - 136).
Block-copolymer-assisted synthesis of hydroxyapatite nanoparticles with high surface area and uniform size

Abstract We report the synthesis of hydroxyapatite nanoparticles (HANPs) by the coprecipitation method using calcium D-gluconate and potassium hydrogen phosphate as the sources of calcium and phosphate ions, respectively, and the triblock copolymer F127 as a stabilizer. The HANPs were characterized using scanning electron microscopy, x-ray diffraction, and nitrogen adsorption/desorption isotherms. Removal of F127 by solvent extraction or calcination alters the structure of HANPs. The solvent-extracted HANPs were single crystals with their 〈001〉 axis oriented along the rod axis of the HANP, whereas the calcined HANPs contained two crystal phases that resulted in a spherical morphology. The calcined HANPs had much higher surface area (127 m2 g−1) than the solvent-extracted HANPs (44 m2 g−1).
Cellular Changes Induced by Low-Risk Human Papillomavirus Type 11 in Keratinocytes That Stably Maintain Viral Episomes

ABSTRACT Infections by low-risk papillomavirus types, such as human papillomavirus (HPV) type 6 (HPV-6) and HPV-11, induce benign genital warts that rarely progress to malignancy. In contrast, lesions induced by high-risk HPV types have the potential to progress to cancer. Considerable information is available concerning the pathogenesis of high-risk HPV types, but little is known about the life cycle of low-risk HPV types. Although functionally distinct, both high- and low-risk virus types infect keratinocytes and induce virion production upon differentiation. This information suggests that they may share common mechanisms for regulating their productive life cycles. Using tissue culture methods developed to study high-risk HPV types, we examined the ability of HPV-11 to be stably maintained as episomes following transfection of normal human keratinocytes with cloned viral DNA. HPV-11 genomes were found to be maintained in keratinocytes for extended passages in cultures in 14 independent experiments involving transfection of cloned HPV-11 DNA. Interestingly, the HPV-11-positive cells exhibited an extended life span that averaged approximately twofold longer than that of control neomycin-transfected cells. In organotypic cultures, HPV-11-positive cells exhibited altered differentiation patterns, but the extent of disruption was less severe than that seen with high-risk HPV types. In addition, the amplification of HPV-11 DNA, as well as the induction of several viral messages, was observed following differentiation of transfected cells in semisolid media. To determine whether global changes in cellular gene expression induced by HPV-11 were similar to those observed with high-risk HPV-31 (Y. E. Chang and L. A. Laimins, J. Virol. 74:4174–4182, 2000), microarray analysis of 7,075 expressed sequences was performed. A spectrum of cellular genes different from that previously reported for HPV-31 was found to be activated or repressed by HPV-11. The expression of only a small set of genes was similarly altered by both high- and low-risk HPV types. This result suggests that different classes of HPVs have distinct effects on global cellular transcription patterns during infection. The methods described allow for a genetic analysis of HPV-11 in the context of its differentiation-dependent life cycle.