Miracle-dz/UniFAR-FTUs huggingface dataset:
THE EFFECT OF EPITHELIAL REMNANT AND WHOLE ORGAN GRAFTS OF THYMUS ON THE RECOVERY OF THYMECTOMIZED IRRADIATED MICE

Work has been presented which suggests that thymus epithelial reticular cells are not effective in restoring the microscopic morphology of lymphoid tissues and their immunologic capacities. They function in recruiting precursors of thymus lymphocytes from the host animals to produce an organ which, after it becomes architecturally normal, can reconstitute the defective host. Intact thymus grafts in situ from 10–14 days, but not for shorter periods of time, have been shown to result in a return toward normal of these two parameters. Evidence is offered to show that few dividing cellular components in the lymphoid tissue originate from the thymus remnant grafts, and that a minor cellular component is contributed by the intact grafts. These data support the concept that the structural and functional development of the lymphatic tissue in thymectomized animals is dependent on thymus lymphoid cells and/or their products, and that the epithelial-reticular cells do not have a direct action in peripheral lymphoid reconstitution.
Enteritis in sheep, goats and pigs due to Yersinia pseudotuberculosis infection

SUMMARY The features of naturally occurring Yersinia pseudotuberculosis serotype III infections in 16 sheep, one goat and 3 pigs, and Y. pseudotuberculosis serotype I infections in 3 goats, are described. Affected animals usually had diarrhoea and were in poor condition or emaciated. A number were moribund or dead when submitted for necropsy. Thickening of the caecal and colonic mucosa was the only gross lesion attributable to Y. pseudotuberculosis infection, with liver or other visceral abscesses not being seen. Characteristic microabscesses were demonstrated in the intestinal mucosa of 10 sheep, one goat and one pig infected with Y. pseudotuberculosis serotype III and one goat infected with Y. pseudotuberculosis serotype I. Sheep, goats and pigs dosed orally with Y. pseudotuberculosis serotype III, the serotype isolated most commonly from these species, developed intestinal infection. In sheep and pigs, infection was accompanied by diarrhoea. Haematological changes and specific antibodies were elicited in all 3 species in response to infection. Microabscesses were seen in the intestinal mucosa of all experimentally exposed animals. The occurrence of field cases and the results of experimental exposure confirm that Y. pseudotuberculosis serotype III is an enteropathogen of sheep, goats and pigs. The association of Y. pseudotuberculosis serotype I with lesions in a goat, indicates that this bacterium may also be a pathogen of this species. It is concluded that Y. pseudotuberculosis serotype III is an enteric pathogen of a wide range of ungulate species including cattle, buffalo, deer, antelopes, sheep, goats and pigs. Serotypes I and II, while having a more restricted host range, are probably also pathogens of ungulates and, in particular, deer, antelopes and goats.
Transpressional Rupture Cascade of the 2016 Mw 7.8 Kaikoura Earthquake, New Zealand

Large earthquakes often do not occur on a simple planar fault but involve rupture of multiple geometrically complex faults. The 2016 Mw 7.8 Kaikoura earthquake, New Zealand, involved the rupture of at least 21 faults, propagating from southwest to northeast for about 180 km. Here we combine space geodesy and seismology techniques to study subsurface fault geometry, slip distribution, and the kinematics of the rupture. Our finite‐fault slip model indicates that the fault motion changes from predominantly right‐lateral slip near the epicenter to transpressional slip in the northeast with a maximum coseismic surface displacement of about 10 m near the intersection between the Kekerengu and Papatea faults. Teleseismic back projection imaging shows that rupture speed was overall slow (1.4 km/s) but faster on individual fault segments (approximately 2 km/s) and that the conjugate, oblique‐reverse, north striking faults released the largest high‐frequency energy. We show that the linking Conway‐Charwell faults aided in propagation of rupture across the step over from the Humps fault zone to the Hope fault. Fault slip cascaded along the Jordan Thrust, Kekerengu, and Needles faults, causing stress perturbations that activated two major conjugate faults, the Hundalee and Papatea faults. Our results shed important light on the study of earthquakes and seismic hazard evaluation in geometrically complex fault systems.
Tourism Extranet Acceptance in the Cruise Distribution Chain: The Role of Content, Usability, and Appearance

travel agencies remain the most popular distribution channel for cruises and a major determinant of passengers’ postvacation evaluation. Our starting point is that cruise operators’ extranets can contribute to their relationship with travel agencies, while improving the evaluation of cruise services. Within e-tourism research, the B2B dimension and the utilization of extranets is underrepresented, especially within the cruise domain. Consequently, this article seeks to contribute to a better understanding of travel agents’ requirements on cruise/tour operators’ extranets. A Web-based survey of 260 German, Austrian, and Swiss travel agents, selling cruise holidays, was conducted in order to examine the role and significance of content, usability, and appearance for the acceptance of tourism extranets. the results of the survey revealed that question items related to the content dimension were more significant that the items associated with usability and appearance. Following a discussion of the findings, further research and practical implications are outlined
Antibiotic-Induced Pathobiont Dissemination Accelerates Mortality in Severe Experimental Pancreatitis

Although antibiotic-induced dysbiosis has been demonstrated to exacerbate intestinal inflammation, it has been suggested that antibiotic prophylaxis may be beneficial in certain clinical conditions such as acute pancreatitis (AP). However, whether broad-spectrum antibiotics, such as meropenem, influence the dissemination of multidrug-resistant (MDR) bacteria during severe AP has not been addressed. In the currently study, a mouse model of obstructive severe AP was employed to investigate the effects of pretreatment with meropenem on bacteria spreading and disease outcome. As expected, animals subjected to biliopancreatic duct obstruction developed severe AP. Surprisingly, pretreatment with meropenem accelerated the mortality of AP mice (survival median of 2 days) when compared to saline-pretreated AP mice (survival median of 7 days). Early mortality was associated with the translocation of MDR strains, mainly Enterococcus gallinarum into the blood stream. Induction of AP in mice with guts that were enriched with E. gallinarum recapitulated the increased mortality rate observed in the meropenem-pretreated AP mice. Furthermore, naïve mice challenged with a mouse or a clinical strain of E. gallinarum succumbed to infection through a mechanism involving toll-like receptor-2. These results confirm that broad-spectrum antibiotics may lead to indirect detrimental effects during inflammatory disease and reveal an intestinal pathobiont that is associated with the meropenem pretreatment during obstructive AP in mice.
Vagotomy/Drainage Is Superior to Local Oversew in Patients Who Require Emergency Surgery for Bleeding Peptic Ulcers

Objective:To compare early postoperative outcomes of patients undergoing different types of emergency procedures for bleeding or perforated gastroduodenal ulcers. Background:Although definitive acid-reducing procedures are being used less frequently during emergency ulcer surgery, there is little published data to support this change in practice. Methods:A retrospective analysis of data for patients from the 2005–2011 American College of Surgeons National Surgical Quality Improvement Program database who underwent emergency operation for bleeding or perforated peptic ulcer disease was performed to determine the association between surgical approach (local procedure alone, vagotomy/drainage, or vagotomy/gastric resection) and 30-day postoperative outcomes. Multivariable regression analysis was used to adjust for a number of patient-related factors. Results:A total of 3611 patients undergoing emergency ulcer surgery (775 for bleeding, 2374 for perforation) were included for data analysis. Compared with patients undergoing local procedures alone, vagotomy/gastric resection was associated with significantly greater postoperative morbidity when performed for either ulcer perforation or bleeding. For patients with perforated ulcers, vagotomy/drainage produced similar outcomes as local procedures but required a significantly greater length of postoperative hospitalization. Conversely, vagotomy/drainage was associated with a significantly lower postoperative mortality rate than local ulcer oversew when performed for bleeding ulcers. Conclusions:Simple repair is the procedure of choice for patients requiring emergency surgery for perforated peptic ulcer disease. For patients requiring emergency operation for intractable ulcer bleeding, vagotomy/drainage is associated with lower postoperative mortality than with simple ulcer oversew.
Taxonomy Caching: A Scalable Low-CostMechanism for Indexing Remote Contents in Peer-to-Peer Systems

High storage capacity and support for wireless Internet is now available in an increasingly higher number of mobile devices. These devices can be connected in a P2P network, thus enabling sharing of resources (which can be both files and services) with other users participating in the network. An important challenge is to enable capabilities for finding relevant resources stored at other devices. In this paper, we present an approach to improve P2P search that is particularly suitable for connections with limited bandwidth, as in the case of portable devices. The contents of a peer are represented by taxonomy terms, and remote peers maintain a taxonomy overview instead of detailed indexing information of remote peers' contents. We show through simulations that our approach, while achieving comparable recall compared to basic flooding, significantly reduces 1) the number of messages needed for performing a query and 2) the number of peers that have to be contacted during the query
Inhomogeneous spherical-earth finite element model of coseismic offset due to the 2012 Indian Ocean Earthquake

On April 11, 2012, a Mw 8.6 earthquake struck off the west coast of northern Sumatra approximately 300 km west of the Sunda trench following by Mw 8.2 two hours afterward. The 2012 Indian Ocean Earthquake sequence, which was the largest intraplate earthquake in recorded history, yielded seismic moment of 1.2-1.3 × 1022 N m and 0.2-0.3 × 1022 N m for the main shock (Mw 8.6) and the after shock (Mw 8.2), respectively. Aceh GPS Network for Sumatran Fault System (AGNeSS) observed a predominantly ENE coseismic offset up to 10 cm while the sites on the Andaman Island observed southward and southern part Sumatra GPS Array (SuGar) network observed northward. Limited far-field and inland GPS observation network might lead the homogeneous and half-space model insufficient to explain the coseismic offset. In that of sense, in order to estimate more realistic surface displacement due to complex subduction and far-field GPS station, we consider developing inhomogeneous three-dimensional finite element model incorporat.
The pCri System: A Vector Collection for Recombinant Protein Expression and Purification

A major bottleneck in structural, biochemical and biophysical studies of proteins is the need for large amounts of pure homogenous material, which is generally obtained by recombinant overexpression. Here we introduce a vector collection, the pCri System, for cytoplasmic and periplasmic/extracellular expression of heterologous proteins that allows the simultaneous assessment of prokaryotic and eukaryotic host cells (Escherichia coli, Bacillus subtilis, and Pichia pastoris). By using a single polymerase chain reaction product, genes of interest can be directionally cloned in all vectors within four different rare restriction sites at the 5′end and multiple cloning sites at the 3′end. In this way, a number of different fusion tags but also signal peptides can be incorporated at the N- and C-terminus of proteins, facilitating their expression, solubility and subsequent detection and purification. Fusion tags can be efficiently removed by treatment with site-specific peptidases, such as tobacco etch virus proteinase, thrombin, or sentrin specific peptidase 1, which leave only a few extra residues at the N-terminus of the protein. The combination of different expression systems in concert with the cloning approach in vectors that can fuse various tags makes the pCri System a valuable tool for high throughput studies.
Absence of relationship between tuberculin reactivity and atopy in BCG vaccinated young adults

BACKGROUND An inverse association between tuberculin responses and atopy has been observed in Japanese children, indicating that BCG immunisation, subclinical exposure to Mycobacterium tuberculosis without clinical disease, or host characteristics may influence the T helper (Th) lymphocyte balance with decreased atopy as a result. This study was undertaken to determine whether tuberculin reactivity is inversely related to atopy in young adults vaccinated with BCG at the age of 14. METHODS Men and women aged 20–44 years were tested using the adrenaline-Pirquet test with Norwegian produced synthetic medium tuberculin (n = 891). In addition, their serum total and specific IgE antibodies against mite, cat, timothy grass, mould and birch were measured. RESULTS Of the 574 subjects with complete examinations, 64% had a positive adrenaline-Pirquet tuberculin test (⩾4 mm) and 27% exhibited IgE antibodies (⩾0.35 kU/l) to one or more of the five specific allergens. The geometric mean of total serum IgE in the population was 30.2 kU/l. Tuberculin reactivity and log IgE were not correlated (r = 0.043, p = 0.30). The mean tuberculin reactivity was 4.6 mm, 4.9 mm, and 5.0 mm in the lower, middle and upper tertile of IgE distribution (<14 kU/l, 14–61 kU/l, >61 kU/l). The prevalence of atopy, as assessed by either the presence of any of the five specific IgE antibodies or by each specific IgE antibody separately, did not differ between subjects with a positive and those with a negative tuberculin test. These results persisted after adjustment for age, sex, and smoking status in multivariate logistic regression analyses. CONCLUSIONS In this young adult population, BCG vaccinated at the age of 14, no significant relationship between a positive tuberculin reaction and atopy was observed. If a true relationship had been found, our study suggests that it may be limited to populations immunised in early childhood when a substantial modulation of the immune system can occur.
Plasmids of enterotoxigenic Escherichia coli H10407: evidence for two heat-stable enterotoxin genes and a conjugal transfer system

Three species of plasmids, associated with virulence and conjugal transfer, were identified in a clinically isolated enterotoxigenic Escherichia coli strain, H10407 (serotype O78:H11). pCS1, a non-self-transmissible plasmid species with a molecular weight of 62 X 10(6) and a 47 mol% guanine-plus-cytosine content, specified colonization factor antigen I and heat-stable enterotoxin (ST) production, as reported by others previously. A second non-self-transmissible plasmid species, designated pJY11, with a molecular weight of 42 X 10(6) and a 51 mol% guanine-plus-cytosine content, specified ST and heat-labile enterotoxin production and manifested T5/T6 phage restriction. The third plasmid species, pTRA1, also had a molecular weight of 42 X 10(6) and had a guanine-plus-cytosine content of 51 mol%; this species was self-transmissible and promoted transfer of both pCS1 and pJY11 to other bacterial cells. pCS1 may have originated from species of bacteria with a lower guanine-plus-cytosine content than E. coli. Finally, although demonstrating some heterogeneity with each other, both STs encoded by pCS1 and pJY11 belonged to the STa group.
Geochemical Composition and Petrogenesis of Schists and Amphibolites of Parts of Sheets 203 (Lafiagi) SW and 224 (Osi) NW, Southwestern Nigeria

Precambrian meta-sedimentary rocks are widely exposed and are interbanded with amphibolitic rocks in Sheets 203 (Lafiagi) SW and 224 (Osi) NW, southwestern Nigeria. They are underlain by migmatitic and granitic gneisses and intruded by Late- to Post- Pan African granitoids. Petrographic and geochemical studies show that the meta-sediments are para-schists of arkosic to greywacke parentage which were sourced from a moderately weathered feldspathic igneous rock(s) while the amphibolitic rocks are sub alkaline Island Arc tholeiites whose original chemistry have been significantly altered during and after the emplacement. Derivation of the schists from K feldspar-rich protoliths is indicated by the enhancement of Ba over Rb while the presence of significant amount of mafic constituents is signified by relatively high amount of Cr and, sometimes, Ni. Low level of weathering of the protolith is suggested, based on the calculated CIA values. The geochemical characteristics of the amphibolites indicate a possible origin from a basaltic magma under an oxidizing condition. The study area shows similar petrological, structural and geochemical characteristics with the Ilesha Schist Belt to the south and to which it is considered to be the northern extension.
Myosin Light Chain–activating Phosphorylation Sites Are Required for Oogenesis in Drosophila

The Drosophila spaghetti squash (sqh) gene encodes the regulatory myosin light chain (RMLC) of nonmuscle myosin II. Biochemical analysis of vertebrate nonmuscle and smooth muscle myosin II has established that phosphorylation of certain amino acids of the RMLC greatly increases the actin-dependent myosin ATPase and motor activity of myosin in vitro. We have assessed the in vivo importance of these sites, which in Drosophila correspond to serine-21 and threonine-20, by creating a series of transgenes in which these specific amino acids were altered. The phenotypes of the transgenes were examined in an otherwise null mutant background during oocyte development in Drosophila females. Germ line cystoblasts entirely lacking a functional sqh gene show severe defects in proliferation and cytokinesis. The ring canals, cytoplasmic bridges linking the oocyte to the nurse cells in the egg chamber, are abnormal, suggesting a role of myosin II in their establishment or maintenance. In addition, numerous aggregates of myosin heavy chain accumulate in the sqh null cells. Mutant sqh transgene sqh-A20, A21 in which both serine-21 and threonine-20 have been replaced by alanines behaves in most respects identically to the null allele in this system, with the exception that no heavy chain aggregates are found. In contrast, expression of sqh-A21, in which only the primary phosphorylation target serine-21 site is altered, partially restores functionality to germ line myosin II, allowing cystoblast division and oocyte development, albeit with some cytokinesis failure, defects in the rapid cytoplasmic transport from nurse cells to cytoplasm characteristic of late stage oogenesis, and some damaged ring canals. Substituting a glutamate for the serine-21 (mutant sqh-E21) allows oogenesis to be completed with minimal defects, producing eggs that can develop normally to produce fertile adults. Flies expressing sqh-A20, in which only the secondary phosphorylation site is absent, appear to be entirely wild type. Taken together, this genetic evidence argues that phosphorylation at serine-21 is critical to RMLC function in activating myosin II in vivo, but that the function can be partially provided by phosphorylation at threonine-20.
Defending Tor from Network Adversaries: A Case Study of Network Path Prediction

Abstract The Tor anonymity network has been shown vulnerable to traffic analysis attacks by autonomous systems (ASes) and Internet exchanges (IXes), which can observe different overlay hops belonging to the same circuit. We evaluate whether network path prediction techniques provide an accurate picture of the threat from such adversaries, and whether they can be used to avoid this threat. We perform a measurement study by collecting 17.2 million traceroutes from Tor relays to destinations around the Internet. We compare the collected traceroute paths to predicted paths using state-of-the-art path inference techniques. We find that traceroutes present a very different picture, with the set of ASes seen in the traceroute path differing from the predicted path 80% of the time. We also consider the impact that prediction errors have on Tor security. Using a simulator to choose paths over a week, our traceroutes indicate a user has nearly a 100% chance of at least one compromise in a week with 11% of total paths containing an AS compromise and less than 1% containing an IX compromise when using default Tor selection. We find modifying the path selection to choose paths predicted to be safe lowers total paths with an AS compromise to 0.14% but still presents a 5–11% chance of at least one compromise in a week while making 5% of paths fail, with 96% of failures due to false positives in path inferences. Our results demonstrate more measurement and better path prediction is necessary to mitigate the risk of AS and IX adversaries to Tor.
Multiple Signal Transduction Pathways Link Na+/K+-ATPase to Growth-related Genes in Cardiac Myocytes

We showed before that in neonatal rat cardiac myocytes partial inhibition of Na+/K+-ATPase by nontoxic concentrations of ouabain causes hypertrophic growth and transcriptional regulations of genes that are markers of cardiac hypertrophy. In view of the suggested roles of Ras and p42/44 mitogen-activated protein kinases (MAPKs) as key mediators of cardiac hypertrophy, the aim of this work was to explore their roles in ouabain-initiated signal pathways regulating four growth-related genes of these myocytes,i.e. those for c-Fos, skeletal α-actin, atrial natriuretic factor, and the α3-subunit of Na+/K+-ATPase. Ouabain caused rapid activations of Ras and p42/44 MAPKs; the latter was sustained longer than 90 min. Using high efficiency adenoviral-mediated expression of a dominant-negative Ras mutant, and a specific inhibitor of MAPK kinase (MEK), activation of Ras-Raf-MEK-p42/44 MAPK cascade by ouabain was shown. The effects of the mutant Ras, an inhibitor of Ras farnesylation, and the MEK inhibitor on ouabain-induced changes in mRNAs of the four genes indicated that (a) skeletal α-actin induction was dependent on Ras but not on p42/44 MAPKs, (b) α3 repression was dependent on the Ras-p42/44 MAPK cascade, and (c) induction of c-fos or atrial natriuretic factor gene occurred partly through the Ras-p42/44 MAPK cascade, and partly through pathways independent of Ras and p42/44 MAPKs. All ouabain effects required extracellular Ca2+, and were attenuated by a Ca2+/calmodulin antagonist or a protein kinase C inhibitor. The findings show that (a) signal pathways linked to sarcolemmal Na+/K+-ATPase share early segments involving Ca2+ and protein kinase C, but diverge into multiple branches only some of which involve Ras, or p42/44 MAPKs, or both; and (b) there are significant differences between this network and the related gene regulatory pathways activated by other hypertrophic stimuli, including those whose responses involve increases in intracellular free Ca2+ through different mechanisms.