Miracle-dz/UniFAR-FTUs huggingface dataset:
Down-Regulation of Rad51 and Decreased Homologous Recombination in Hypoxic Cancer Cells

ABSTRACT There is an emerging concept that acquired genetic instability in cancer cells can arise from the dysregulation of critical DNA repair pathways due to cell stresses such as inflammation and hypoxia. Here we report that hypoxia specifically down-regulates the expression of RAD51, a key mediator of homologous recombination in mammalian cells. Decreased levels of Rad51 were observed in multiple cancer cell types during hypoxic exposure and were not associated with the cell cycle profile or with expression of hypoxia-inducible factor. Analyses of RAD51 gene promoter activity, as well as mRNA and protein stability, indicate that the hypoxia-mediated regulation of this gene occurs via transcriptional repression. Decreased expression of Rad51 was also observed to persist in posthypoxic cells for as long as 48 h following reoxygenation. Correspondingly, we found reduced levels of homologous recombination in both hypoxic and posthypoxic cells, suggesting that the hypoxia-associated reduction in Rad51 expression has functional consequences for DNA repair. In addition, hypoxia-mediated down-regulation of Rad51 was confirmed in vivo via immunofluorescent image analysis of experimental tumors in mice. Based on these findings, we propose a novel mechanism of genetic instability in the tumor microenvironment mediated by hypoxia-induced suppression of the homologous recombination pathway in cancer cells. The aberrant regulation of Rad51 expression may also create heterogeneity in the DNA damage response among cells within tumors, with implications for the response to cancer therapies.
A Filtering Diplexing Antenna for Dual-Band Operation With Similar Radiation Patterns and Low Cross-Polarization Levels

A novel filtering diplexing antenna for dual-band operation is presented. The antenna is composed of a slot-loaded patch and two resonators with a commonly used ground. Dog-bone-shaped slots are used on the ground for achieving broadside magnetic coupling and increasing the isolation between operating bands. The antenna design is based on a second-order Chebyshev bandpass filter synthesis. The proposed antenna exhibits high band-edge selectivity performance, low cross-polarization levels with half-power beamwidths greater than 86° for 2.4- and 5.2-GHz WLAN communication bands. The measured and simulated results are highly consistent.
The bandwidth of consolidation into visual short-term memory depends on the visual feature

We investigated the nature of the bandwidth limit in the consolidation of visual information into visual short-term memory. In the first two experiments, we examined whether previous results showing differential consolidation bandwidth for colour and orientation resulted from methodological differences by testing the consolidation of colour information with methods used in prior orientation experiments. We briefly presented two colour patches with masks, either sequentially or simultaneously, followed by a location cue indicating the target. Participants identified the target colour via buttonpress (Experiment 1) or by clicking a location on a colour wheel (Experiment 2). Although these methods have previously demonstrated that two orientations are consolidated in a strictly serial fashion, here we found equivalent performance in the sequential and simultaneous conditions, suggesting that two colours can be consolidated in parallel. To investigate whether this difference resulted from different consolidation mechanisms or a common mechanism with different features consuming different amounts of bandwidth, Experiment 3 presented a colour patch and an oriented grating either sequentially or simultaneously. We found a lower performance in the simultaneous than the sequential condition, with orientation showing a larger impairment than colour. These results suggest that consolidation of both features share common mechanisms. However, it seems that colour requires less information to be encoded than orientation. As a result, two colours can be consolidated in parallel without exceeding the bandwidth limit, whereas two orientations or an orientation and a colour exceed the bandwidth and appear to be consolidated serially.
Dietary exposures to selected metals and pesticides.

Average daily dietary exposures to 11 contaminants were estimated for approximately 120,000 U.S. adults by combining data on annual diet, as measured by a food frequency questionnaire, with contaminant residue data for table-ready foods that were collected as part of the annual U.S. Food and Drug Administration Total Diet Study. The contaminants included in the analysis were four heavy metals (arsenic, cadmium, lead, mercury), three organophosphate pesticides (chlorpyrifos, diazinon, malathion), and four organochlorine pesticides (dieldrin, p,p'-DDE, lindane, heptachlor epoxide). Dietary exposures to these contaminants were highly variable among individuals, spanning two to three orders of magnitude. Intraindividual exposures to the metals, organophosphates, and organochlorines were estimated to be strongly correlated; Pearson's correlation coefficients ranged from 0.28 for lindane:dieldrin to 0.84 for lead:mercury. For some of the compounds (e.g., arsenic and dieldrin), a substantial fraction of the population was estimated to have dietary intakes in excess of health-based standards established by the EPA. Before use for risk assessment or epidemiologic purposes, however, the validity of the exposure estimates must be evaluated by comparison with biological indicators of chronic exposure. Because of their low detection rate in table-ready foods, the estimated distributions of exposures for dieldrin, p,p'-DDE, heptachlor epoxide, lindane, diazinon, and chlorpyrifos were found to be sensitive to assumed values for nondetect samples. Reliable estimates of the population distribution of dietary exposures to most other contaminants cannot be made currently, due to their low rate of detection in table-ready foods. Monitoring programs that use more sensitive study designs and population-based assessments for other subpopulations should be a priority for future research. ImagesFigure 1.Figure 2.Figure 3.Figure 4.
Lack of Bdnf and TrkB signalling in the postnatal cochlea leads to a spatial reshaping of innervation along the tonotopic axis and hearing loss

Members of the neurotrophin gene family and their high-affinity Trk receptors control innervation of the cochlea during embryonic development. Lack of neurotrophin signalling in the cochlea has been well documented for early postnatal animals, resulting in a loss of cochlear sensory neurones and a region-specific reduction of target innervation along the tonotopic axis. However, how reduced neurotrophin signalling affects the innervation of the mature cochlea is currently unknown. Here, we have analysed the consequences of a lack of the TrkB receptor and its ligand, the neurotrophin brain-derived neurotrophic factor (Bdnf), in the late postnatal or adult cochlea using mouse mutants. During early postnatal development, mutant animals show a lack of afferent innervation of outer hair cells in the apical part of the cochlea, whereas nerve fibres in the basal part are maintained. Strikingly, this phenotype is reversed during subsequent maturation of the cochlea, which results in a normal pattern of outer hair cell innervation in the apex and loss of nerve fibres at the base in adult mutants. Measurements of auditory brain stem responses of these mice revealed a significant hearing loss. The observed innervation patterns correlate with opposing gradients of Bdnf and Nt3 expression in cochlear neurones along the tonotopic axis. Thus, the reshaping of innervation may be controlled by autocrine signalling between neurotrophins and their receptors in cochlear neurones. Our results indicate a substantial potential for re-innervation processes in the mature cochlea, which may also be of relevance for treatment of hearing loss in humans.
A Neurocomputational Theory of the Dopaminergic Modulation of Working Memory Functions

The dopaminergic modulation of neural activity in the prefrontal cortex (PFC) is essential for working memory. Delay-activity in the PFC in working memory tasks persists even if interfering stimuli intervene between the presentation of the sample and the target stimulus. Here, the hypothesis is put forward that the functional role of dopamine in working memory processing is to stabilize active neural representations in the PFC network and thereby to protect goal-related delay-activity against interfering stimuli. To test this hypothesis, we examined the reported dopamine-induced changes in several biophysical properties of PFC neurons to determine whether they could fulfill this function. An attractor network model consisting of model neurons was devised in which the empirically observed effects of dopamine on synaptic and voltage-gated membrane conductances could be represented in a biophysically realistic manner. In the model, the dopamine-induced enhancement of the persistent Na+ and reduction of the slowly inactivating K+ current increased firing of the delay-active neurons, thereby increasing inhibitory feedback and thus reducing activity of the “background” neurons. Furthermore, the dopamine-induced reduction of EPSP sizes and a dendritic Ca2+ current diminished the impact of intervening stimuli on current network activity. In this manner, dopaminergic effects indeed acted to stabilize current delay-activity. Working memory deficits observed after supranormal D1-receptor stimulation could also be explained within this framework. Thus, the model offers a mechanistic explanation for the behavioral deficits observed after blockade or after supranormal stimulation of dopamine receptors in the PFC and, in addition, makes some specific empirical predictions.
Heavy Metals and Human Health: Mechanistic Insight into Toxicity and Counter Defense System of Antioxidants

Heavy metals, which have widespread environmental distribution and originate from natural and anthropogenic sources, are common environmental pollutants. In recent decades, their contamination has increased dramatically because of continuous discharge in sewage and untreated industrial effluents. Because they are non-degradable, they persist in the environment; accordingly, they have received a great deal of attention owing to their potential health and environmental risks. Although the toxic effects of metals depend on the forms and routes of exposure, interruptions of intracellular homeostasis include damage to lipids, proteins, enzymes and DNA via the production of free radicals. Following exposure to heavy metals, their metabolism and subsequent excretion from the body depends on the presence of antioxidants (glutathione, α-tocopherol, ascorbate, etc.) associated with the quenching of free radicals by suspending the activity of enzymes (catalase, peroxidase, and superoxide dismutase). Therefore, this review was written to provide a deep understanding of the mechanisms involved in eliciting their toxicity in order to highlight the necessity for development of strategies to decrease exposure to these metals, as well as to identify substances that contribute significantly to overcome their hazardous effects within the body of living organisms.
ANOMALOUSLY HIGH LEVELS OF URANIUM AND OTHER NATURALLY OCCURRING RADIONUCLIDES IN PRIVATE WELLS IN THE PIEDMONT REGION OF SOUTH CAROLINA

Anomalously high levels of uranium and 210Pb have been detected in untreated domestic groundwater wells near Simpsonville/Fountain Inn, South Carolina. Nine wells were sampled from the affected area and analyzed for total uranium, 234,235,238U, 226,228Ra, 222Rn, and 210Pb as well other water quality parameters. These data augment other uranium concentration measurements and limited 226,228Ra and 222Rn concentration measurements collected on private and public wells by the South Carolina Department of Health and Environmental Control. The observed radionuclide data were compared to maximum levels published in several national surveys from the past 30 years. The total uranium concentration in the groundwater ranged from 44.3 to 5,570 &mgr;g L−1, with one well having the second highest published concentration in the U.S. The 234U/238U activity ratio ranged from 1.1 to 2.5. 226Ra concentrations ranged from less than the minimum detectable concentration (< MDC) to 1,154 mBq L−1 while the 228Ra concentration ranged from < MDC to 532.8 mBq L−1 and the 222Rn levels ranged from 62 to 1,510 Bq L−1. The 210Pb concentrations ranged from < MDC to 844 mBq L−1.
Climate change impact on Balearic shearwater through a trophic cascade

A recent study showed that a critically endangered migratory predator species, the Balearic shearwater Puffinus mauretanicus, rapidly expanded northwards in northeast Atlantic waters after the mid-1990s. As a significant positive correlation was found between the long-term changes in the abundance of this seabird and sea temperature around the British Isles, it was hypothesized that the link between the biogeographic shift and temperature occurred through the food web. Here, we test this conjecture and reveal concomitant changes in a regional index of sea temperature, plankton (total calanoid copepod), fish prey (anchovy and sardine) and the Balearic shearwater for the period 1980–2003. All three trophic levels exhibit a significant shift detected between 1994 and 1996. Our findings therefore support the assertion of both a direct and an indirect effect of climate change on the spatial distribution of post-breeding Balearic shearwater through a trophic cascade.
Maternal attachment representations in relation to emotional availability and discipline behaviour

Maternal attachment representations have been investigated in relation to sensitivity and emotional support, but rarely in relation to other important areas of daily parent–child interactions in early childhood, like limit setting and discipline strategies. This study investigates maternal attachment representations in relation to parenting sensitive and discipline behaviours. The sample consists of 37 Portuguese high-risk severely economically disadvantaged mothers and their 1- to 4-year-old children, that responded to the Adult Attachment Interview, and were observed in play and discipline interaction contexts. The results showed that a more preoccupied state of mind was related to less emotional availability in free play interaction with child. A more secure attachment representation was related to more psychologically controlling discipline tactics. These findings highlight the relevance of maternal attachment states of mind in understanding parenting practices in several domains, and are discussed in light of sociocultural factors.
Erythroid Differentiation Regulator 1 as a Novel Biomarker for Hair Loss Disorders

Erythroid differentiation regulator 1 (Erdr1) is known to be involved in the inflammatory process via regulating the immune system in many cutaneous disorders, such as psoriasis and rosacea. However, the role of Erdr1 in various hair loss disorders remains unclear. The aim of this study was to investigate the putative role of Erdr1 in alopecias. Skin samples from 21 patients with hair loss disorders and five control subjects were retrieved, in order to assess their expression levels of Erdr1. Results revealed that expression of Erdr1 was significantly downregulated in the epidermis and hair follicles of patients with hair loss disorders, when compared to that in the control group. In particular, the expression of Erdr1 was significantly decreased in patients with alopecia areata. We propose that Erdr1 downregulation might be involved in the pathogenesis of hair loss, and could be considered as a novel biomarker for hair loss disorders.
The effect of psychometric variables in predicting physical activity behavior among diabetes mellitus type-2 patients

Background Diabetes mellitus type-2 (DMT-2), the most common endocrine disease in the world, is a major global public health-related issue. Diabetes mellitus is one of the most common non-communicable diseases globally, and there is substantial evidence that it is epidemic in many low- and middle-income countries. It is widely recognized that physical activity is important in preventing and treating DMT-2. The aim of this study was to identify predictors of physical activity among DMT-2 patients attending Jimma University Specialized Hospital (JUSH), Southwest Ethiopia. Methods A facility-based cross-sectional study was conducted in 2013 at JUSH, Southwest Ethiopia. A systematic random sampling technique was employed to select 322 diabetes patients. Data were collected using a structured questionnaire on interviewer-administered basis. A summary of descriptive statistics, and binary and multiple logistic regression analysis were computed to identify potential predictors of physical activity among diabetes mellitus patients. Results Among the 319, 70 (21%) engaged in the recommended physical activity (such as running, jogging, going to the gym, or brisk walking). Two hundred seventy-nine (87.5) of the respondents had adequate general knowledge of diabetes and 31.7% of the respondents had adequate general knowledge of physical activity. The likelihood of engaging in the recommended physical activity was associated with perceived barrier (odds ratio [OR]=0.58, 95% confidence interval, CI [0.56, 0.67]; p<0.000), perceived self-efficacy (OR=1.33, 95% CI [1.12, 1.57] p<0.001) and perceived benefit (OR=1.16 (95% CI [1.03, 1.29] p<0.000). Conclusion This study illustrated that practicing the recommended physical activities among DMT-2 patients was insufficient. Perceived barrier, perceived benefit and perceived self-efficacy became potential predictors of physical activity of DMT-2 patients. None of the socio-demographic factors affect the physical activity behavior of these groups. Diabetes intervention messages should focus on building individual self-efficacy to overcome those barriers with a due emphasis to suggested concrete benefit of physical activity.
Patch Test as a Diagnostic Tool in Hand Eczema.

INTRODUCTION Allergic contact dermatitis is an important cause of hand eczema. Patch testing is the only investigation available to prove the diagnosis of allergic contact dermatitis. Exposures to allergens differ according to geographical, occupational, economic and social factors. Accordingly, patterns of allergic contact dermatitis differ in different parts of the world and different regions of the same country. AIM To study the causes of allergic contact dermatitis in adult patients with hand eczema with the help of patch testing. MATERIALS AND METHODS This was a cross-sectional study involving 54 hand eczema patients conducted between October 2013 and June 2015, at a tertiary care centre in Southern India. After a detailed history including history of occupational exposure and detailed examination, patch test was done on these patients with Indian standard series. The patches were removed after 48 hours. Another reading was taken after 72 hours. The readings were interpreted according to International Contact Dermatitis Research Group criteria and noted down. The data were summarized using mean and standard deviation for continuous variables and percentages for categorical and dichotomous variables. The test of association was done with Fisher's-exact test. RESULTS Hyperkeratotic hand eczema was the commonest morphological type (29%), followed by discoid eczema. Pompholyx was significantly more common among patients with history of atopy. A total of 20 patients (37%) showed patch test positivity to a total of 25 allergens. Nickel was the most common allergen (11.11%) followed by para-phenylenediamine (PPD) (7.4%). Nickel (6 patients) and cobalt (3 patients) were the common allergens among women, while potassium dichromate (3 patients) and parthenium (2 patients) were the common allergens among men. Potassium dichromate allergy was significantly more common among masons and PPD allergy was significantly more common among hair dye users. Discoid pattern of hand eczema was common among patients with allergy to potassium dichromate. CONCLUSION Majority of the cases of hand eczema are not due to allergic contact dermatitis. History of atopy is common among patients with pompholyx. Allergic contact dermatitis due to nickel remains a common cause of hand eczema.
Improving simulated Amazon forest biomass and productivity by including spatial variation in biophysical parameters

Dynamic vegetation models forced with spatially homogeneous biophysical parameters are capable of producing average productivity and biomass values for the Amazon basin forest biome that are close to the observed estimates, but these models are unable to reproduce observed spatial variability. Recent observational studies have shown substantial regional spatial variability of above-ground productivity and biomass across the Amazon basin, which is believed to be primarily driven by a combination of soil physical and chemical properties. In this study, spatial heterogeneity of vegetation properties is added to the Integrated Biosphere Simulator (IBIS) land surface model, and the simulated productivity and biomass of the Amazon basin are compared to observations from undisturbed forest. The maximum RuBiCo carboxylation capacity ( V cmax ) and the woody biomass residence time (τ w ) were found to be the most important properties determining the modeled spatial variation of above-ground woody net primary productivity and biomass, respectively. Spatial heterogeneity of these properties may lead to simulated spatial variability of 1.8 times in the woody net primary productivity (NPP w ) and 2.8 times in the woody above-ground biomass (AGB w ). The coefficient of correlation between the modeled and observed woody productivity improved from 0.10 with homogeneous parameters to 0.73 with spatially heterogeneous parameters, while the coefficient of correlation between the simulated and observed woody above-ground biomass improved from 0.33 to 0.88. The results from our analyses with the IBIS dynamic vegetation model demonstrated that using single values for key ecological parameters in the tropical forest biome severely limits simulation accuracy. Clearer understanding of the biophysical mechanisms that drive the spatial variability of carbon allocation, τ w and V cmax is necessary to achieve further improvements to simulation accuracy.
Prevalence and determinants of genital infection with papillomavirus, in female and male university students in Busan, South Korea.

BACKGROUND Little is known about the prevalence of human papillomavirus (HPV) infection in young adults in Asia. METHODS We invited female and male students in Busan, South Korea, to participate in a survey that included, for females, self-collection of vaginal cells and, for males, physician-performed collection of exfoliated genital cells. The prevalences of 25 HPV types were evaluated, by a polymerase chain reaction-based assay, in 672 female students (median age, 19 years) and in 381 male students (median age, 22 years). RESULTS HPV DNA was detected more frequently in female students (15.2%) than in male students (8.7%); in both sexes, high-risk HPV types were predominant. Among sexually active students, HPV prevalence was 38.8% in females and 10.6% in males. In female students, currently smoking cigarettes and having multiple lifetime sex partners were the strongest risk factors for HPV infection; in male students, associations between HPV prevalence and sexual habits were similar to those in female students but never attained statistical significance. CONCLUSIONS Young women in South Korea start having penetrative sexual intercourse relatively late (median age, 18 years), but, once they begin, HPV prevalence quickly rises to levels comparable with those found in university students in the United States and in northern Europe. The high rate of participation in our study suggests that trials of new vaccines against HPV may be feasible among university students in South Korea.