Miracle-dz/UniFAR-FTUs huggingface dataset:
Latency and Selectivity of Single Neurons Indicate Hierarchical Processing in the Human Medial Temporal Lobe

Neurons in the temporal lobe of both monkeys and humans show selective responses to classes of visual stimuli and even to specific individuals. In this study, we investigate the latency and selectivity of visually responsive neurons recorded from microelectrodes in the parahippocampal cortex, entorhinal cortex, hippocampus, and amygdala of human subjects during a visual object presentation task. During 96 experimental sessions in 35 subjects, we recorded from a total of 3278 neurons. Of these units, 398 responded selectively to one or more of the presented stimuli. Mean response latencies were substantially larger than those reported in monkeys. We observed a highly significant correlation between the latency and the selectivity of these neurons: the longer the latency the greater the selectivity. Particularly, parahippocampal neurons were found to respond significantly earlier and less selectively than those in the other three regions. Regional analysis showed significant correlations between latency and selectivity within the parahippocampal cortex, entorhinal cortex, and hippocampus, but not within the amygdala. The later and more selective responses tended to be generated by cells with sparse baseline firing rates and vice versa. Our results provide direct evidence for hierarchical processing of sensory information at the interface between the visual pathway and the limbic system, by which increasingly refined and specific representations of stimulus identity are generated over time along the anatomic pathways of the medial temporal lobe.
Risk of Later Seizure After Perinatal Arterial Ischemic Stroke: A Prospective Cohort Study

OBJECTIVE: Although acute seizures are common among neonates with arterial ischemic stroke (AIS), the incidence of subsequent seizures is unknown. The goals of this study were to determine the incidence of seizures following hospital discharge after perinatal acute AIS, and to assess lesion characteristics associated with later seizure occurrence. METHODS: Neonates with confirmed acute AIS on MRI were identified through a prospective stroke registry. Clinic visits and telephone follow-up identified occurrence of seizures after hospital discharge. MRI scans were graded for size and characteristics of infarct, and associations with seizures after stroke were analyzed. RESULTS: At a mean (SD) follow-up of 31.3 (16.1) months, 11 of 46 (23.9%) patients with perinatal AIS had at least 1 seizure. Five patients had a single episode of seizure, and 6 developed epilepsy. The Kaplan-Meier probability of remaining seizure-free at 3 years was 73%. Stroke size on MRI was significantly associated with development of later seizures, with an incidence rate of later seizures 6.2 times higher among those with larger stroke size. CONCLUSIONS: Seizures occurred in <25% of patients during initial follow-up after perinatal AIS. Of those with seizures, nearly half had a single episode of seizure and not early epilepsy. Larger stroke size was associated with higher risk of seizure. These data suggest that prolonged treatment with anticonvulsant agents may not be indicated for seizure prophylaxis after perinatal AIS. These findings may help guide clinicians in counseling families and could form the basis for much-needed future research in this area.
The Concerted Action of Msh2 and UNG Stimulates Somatic Hypermutation at A · T Base Pairs

ABSTRACT Mismatch repair plays an essential role in reducing the cellular mutation load. Paradoxically, proteins in this pathway produce A·T mutations during the somatic hypermutation of immunoglobulin genes. Although recent evidence implicates the translesional DNA polymerase η in producing these mutations, it is unknown how this or other translesional polymerases are recruited to immunoglobulin genes, since these enzymes are not normally utilized in conventional mismatch repair. In this report, we demonstrate that A·T mutations were closely associated with transversion mutations at a deoxycytidine. Furthermore, deficiency in uracil-N-glycolase (UNG) or mismatch repair reduced this association. These data reveal a previously unknown interaction between the base excision and mismatch repair pathways and indicate that an abasic site generated by UNG within the mismatch repair tract recruits an error-prone polymerase, which then introduces A·T mutations. Our analysis further indicates that repair tracts typically are ∼200 nucleotides long and that polymerase η makes ∼1 error per 300 T nucleotides. The concerted action of Msh2 and UNG in stimulating A·T mutations also may have implications for mutagenesis at sites of spontaneous cytidine deamination.
ABORTED MICROSPORES Acts as a Master Regulator of Pollen Wall Formation in Arabidopsis[C][W][OPEN]

The bHLH protein, AMS, acts as a master transcriptional regulator directly modulating the expression of 23 genes related to pollen wall development and sporopollenin biosynthesis in Arabidopsis. These genes are implicated in the separation of microspore mother cells, dissolution of the callose layer of tetrads, and subsequent sporopollenin biosynthesis and pollen coat formation. Mature pollen is covered by durable cell walls, principally composed of sporopollenin, an evolutionary conserved, highly resilient, but not fully characterized, biopolymer of aliphatic and aromatic components. Here, we report that ABORTED MICROSPORES (AMS) acts as a master regulator coordinating pollen wall development and sporopollenin biosynthesis in Arabidopsis thaliana. Genome-wide coexpression analysis revealed 98 candidate genes with specific expression in the anther and 70 that showed reduced expression in ams. Among these 70 members, we showed that AMS can directly regulate 23 genes implicated in callose dissociation, fatty acids elongation, formation of phenolic compounds, and lipidic transport putatively involved in sporopollenin precursor synthesis. Consistently, ams mutants showed defective microspore release, a lack of sporopollenin deposition, and a dramatic reduction in total phenolic compounds and cutin monomers. The functional importance of the AMS pathway was further demonstrated by the observation of impaired pollen wall architecture in plant lines with reduced expression of several AMS targets: the abundant pollen coat protein extracellular lipases (EXL5 and EXL6), and CYP98A8 and CYP98A9, which are enzymes required for the production of phenolic precursors. These findings demonstrate the central role of AMS in coordinating sporopollenin biosynthesis and the secretion of materials for pollen wall patterning.
Methicillin-resistant Staphylococcus aureus in Neonatal Intensive Care Unit

A neonatal intensive care unit outbreak was caused by a strain of methicillin-resistant Staphylococcus aureus previously found in the community (ST45-MRSA-IV). Fifteen infected neonates were identified, 2 of whom died. This outbreak illustrates how a rare community pathogen can rapidly spread through nosocomial transmission.
Learning Social Relation Traits from Face Images

Social relation defines the association, e.g., warm, friendliness, and dominance, between two or more people. Motivated by psychological studies, we investigate if such fine grained and high-level relation traits can be characterised and quantified from face images in the wild. To address this challenging problem we propose a deep model that learns a rich face representation to capture gender, expression, head pose, and age-related attributes, and then performs pairwise-face reasoning for relation prediction. To learn from heterogeneous attribute sources, we formulate a new network architecture with a bridging layer to leverage the inherent correspondences among these datasets. It can also cope with missing target attribute labels. Extensive experiments show that our approach is effective for fine-grained social relation learning in images and videos.
CHLAMYDIAL INFECTIONS

SUMMARY Chlamydiae are among the most successful bacterial pathogens, and there are few branches of medicine on which chlamydial infection and its sequelae do not impinge. Chlamydia trachomatis is responsible for many million cases of blindness, pelvic inflammatory disease, urethritis, epididymitis, infertility and ectopic pregnancy annually; it also causes lymphogranuloma venereum, reactive arthritis, ophthalmia neonatorum and infantile pneumonia. C. pneumoniae is among the most common causes of community‐acquired pneumonia, and recent evidence suggests that it may play a part in the pathogenesis of coronary heart disease. C. psittaci is a highly prevalent zoonotic infection with a wide host range. It is of great economic importance, and causes sporadic but sometimes devastating disease in humans. Most chlamydial infections are subclinical, but even if the initial illness is mild there may be serious long‐term sequelae. It is therefore important to identify and treat chlamydial infections in their early stages, but diagnosis usually depends on laboratory tests. Recent trials have shown that single doses of the long‐acting macrolide azithromycin are effective in the treatment of genital and ocular C. trachomatis infection, but longer courses of antimicrobials remain the mainstay of treatment for C. pneumoniae and C. psittaci infections.
The New Solidarity? Trade Union Coalition-Building in Five Countries

This chapter deals with attempts by unions to build coalitions with other movements and institutions in civil society. In the first place, it identifies the functions of coalition-building for unions and notes the types of resource that unions can access through alliance with other civil society agents. Secondly, it develops a typology of union-backed coalitions that distinguishes between vanguard, common-cause, and integrative coalitions. Thirdly, it examines the factors that promote coalition, which range from diminishing traditional union resources, through the availability of coalition partners to the political opportunity structure. This framework is illustrated by comparing patterns of union coalition-building in the five cases of Britain, Germany, Italy, Spain, and the US.
A theoretical study on electrical and thermal response in resistance spot welding

The effect of contact resistance including constriction and contamination resistance has been a major hurdle for the thermoelectrical analysis of the resistance spot welding process. In this paper, a simple model was suggested and used for calculating the electrical and thermal response of the resistance spot welding process to investigate the influence of contacting forces on the formation of weld nuggets. The electrode surface of the contact interface was assumed to be axisymmetric and its microasperities to have a trapezoidal cross-section. These microasperities were considered as the one-dimensional contact resistance elements in the finite element formulation. The contamination film was assumed to be a nonconducting oxide layer, which is very brittle, so that it is broken to some number of pieces when a contacting pressure is being applied. The crushed films were assumed to be distributed at regular intervals and to conserve their size and number during the welding process. The simulation results revealed that the proposed model can be successfully used to predict the effect of the contact resistance on the electrical and thermal response of the resistance spot welding process.
Disorder and function: a review of the dehydrin protein family

Dehydration proteins (dehydrins) are group 2 members of the late embryogenesis abundant (LEA) protein family. The protein architecture of dehydrins can be described by the presence of three types of conserved sequence motifs that have been named the K-, Y-, and S-segments. By definition, a dehydrin must contain at least one copy of the lysine-rich K-segment. Abiotic stresses such as drought, cold, and salinity cause the upregulation of dehydrin mRNA and protein levels. Despite the large body of genetic and protein evidence of the importance of these proteins in stress response, the in vivo protective mechanism is not fully known. In vitro experimental evidence from biochemical assays and localization experiments suggests multiple roles for dehydrins, including membrane protection, cryoprotection of enzymes, and protection from reactive oxygen species. Membrane binding by dehydrins is likely to be as a peripheral membrane protein, since the protein sequences are highly hydrophilic and contain many charged amino acids. Because of this, dehydrins in solution are intrinsically disordered proteins, that is, they have no well-defined secondary or tertiary structure. Despite their disorder, dehydrins have been shown to gain structure when bound to ligands such as membranes, and to possibly change their oligomeric state when bound to ions. We review what is currently known about dehydrin sequences and their structures, and examine the various ligands that have been shown to bind to this family of proteins.
Sedative and analgesic effects of medetomidine in dogs.

The sedative and analgesic effects of medetomidine were studied in 18 laboratory beagles in a randomized cross-over study which was carried out in a double-blind fashion. Xylazine was included as a positive control and placebo as a negative control. Medetomidine was used at doses of 10, 30, 90 and 180 micrograms/kg i.m. compared to a dose of 2.2 mg/kg xylazine i.m. Parameters closely related to sedation were used to measure the degree of sedation. These were a posture variable (including evaluation of the dog's posture without external disturbance and resistance when laid recumbent) and a relaxation variable (including relaxation of the jaws, upper eyelids and anal sphincter). The first signs of sedation were recorded 1.5-3.5 min after administration of both drugs. The dogs sat down at 0.6-2.6 min post-injection and became prone at 1.9-5.9 min. Medetomidine dose-dependently affected the posture of the dogs and the relaxation variable--the higher the dose, the stronger and longer lasting the effect recorded. The sedative effect of xylazine was comparable to a medetomidine dose of 30 micrograms/kg. The analgesic effect was assessed as changes in the response to superficial pain induced by electrical stimuli. The response threshold increased significantly with both drugs and the effect of medetomidine was dose-dependent. The effects of the doses of 30 micrograms/kg medetomidine and 2.2 mg/kg xylazine did not differ significantly. In summary, medetomidine possessed an excellent sedative effect associated with analgesia in dogs.
Antenna Array Synthesis Using Derivative, Non-Derivative and Random Search Optimization

The literature on antenna array optimization has recently focused on direct search methods that use random decision making, e.g., genetic/evolutionary algorithms (GA) and particle swarm optimization (PSO). In this paper we compare results for test problems from the literature using direct search methods that do not use random decision making, such as Nelder-Mead, with those that do, such as PSO. We also revisit gradient based search methods, specifically Newton-like optimization methods that also do not rely upon randomness. Search efficiency is measured in terms of the total number of function evaluations required to converge to an acceptable pattern. For these test problems it is found that direct search without randomness is far more efficient than direct search with randomness; and that non-random gradient based search is most efficient of all.
Change of Bone Mineral Density and Biochemical Markers of Bone Turnover in Patients on Suppressive Levothyroxine Therapy for Differentiated Thyroid Carcinoma

Untreated hyperthyroidism and high-dose thyroid hormone are associated with osteoporosis, and increased bone mineral density (BMD) has been demonstrated in postmenopausal females with hypoparathyroidism. Studies on the effect of suppressive levothyroxine (LT4) therapy on BMD and bone metabolism after total thyroidectomy in patients with differentiated thyroid carcinoma have presented conflicting results, and few studies in relation to the status of hypoparathyroidism have been studied. One hundred postmenopausal women and 24 premenopausal women on LT4 suppression therapy were included in this study. BMD of lumbar spine and femur and bone turnover markers were measured at the baseline and during the follow-up period up to 18 months using dual energy X-ray absorptiometry. Biochemical marker of bone resorption was measured by urine deoxypyridinoline and bone formation by serum osteocalcin. The age ranged from 36 to 64 years old. Thyroid stimulating hormone (TSH) was suppressed during the study. The results showed that BMD of femur and lumbar spine were not significantly changed in both pre- and postmenopausal women except femur neck in postmenopausal women without hypoparathyroidism. Patients with hypoparathyroidism had higher BMD gain than those without hypoparathyroidism in total hip (1.25 vs. -1.18%, P=0.015). Biochemical markers of bone turnover, serum osteocalcin, and urine deoxypyridinoline did not show significant change. In conclusion, patients with well differentiated thyroid carcinoma are not at a great risk of bone loss after LT4 suppressive therapy. The state of hypoparathyroidism is associated with increased BMD, particularly in postmenopausal women.
Methodology for analysis of stress level based on asymmetry patterns of alpha rhythms in EEG signals

Stress can affect all people, regardless of age, gender or ethnicity. The human body uses stress as an adaptive response against several situations, but it can cause physical, mental or emotional distress. In stress situation the nervous system evokes the same physiological responses, whatever the type of stress and these responses cause changes in the physical, cognitive, emotional and social performance. This paper proposes to develop a methodology for analyzing the stress level using electroencephalographic signals (EEG) based on asymmetry patterns of alpha waves. The subjects of this research are professionals from Vitoria's Fire Department. Activities of the Central Nervous System are capture using Emotiv Epoc Headset, placed on the volunteer's scalp. The signals are analyzed from the frontal cortex at positions Fp1 (AF3), Fp2 (AF4), F3 and F4, according to of the international 10-20 system. The results are analyzed together with some peripheral physiological signals, such as: heart beat rate (ECG), peripheral blood flow, skin conductance, breath rate, body temperature and change in level of salivary cortisone. In addition, a psychological assessment of voluntary's stress is performed through a questionnaire of LIPP-ISS (Inventory of Symptom Stress). A validation study is conducted through a comparison with data available in literature, as well as with evaluation conducted by a psychologist. The results are analyzed in order to get a correlation between EEG signals and physical, mental or emotional stress.
Velocity Measurements in the Middle Cerebral Arteries of Healthy Volunteers Using 3D Radial Phase-Contrast HYPRFlow: Comparison with Transcranial Doppler Sonography and 2D Phase-Contrast MR Imaging

BACKGROUND AND PURPOSE: We have developed PC HYPRFlow, a comprehensive MRA technique that includes a whole-brain CE dynamic series followed by PC velocity-encoding, yielding a time series of high-resolution morphologic angiograms with associated velocity information. In this study, we present velocity data acquired by using the PC component of PC HYPRFlow (PC-VIPR). MATERIALS AND METHODS: Ten healthy volunteers (6 women, 4 men) were scanned by using PC HYPRFlow and 2D-PC imaging, immediately followed by velocity measurements by using TCD. Velocity measurements were made in the M1 segments of the MCAs from the PC-VIPR, 2D-PC, and TCD examinations. RESULTS: PC-VIPR showed approximately 30% lower mean velocity compared with TCD, consistent with other comparisons of TCD with PC-MRA. The correlation with TCD was r = 0.793, and the correlation of PC-VIPR with 2D-PC was r = 0.723. CONCLUSIONS: PC-VIPR is a technique capable of acquiring high-resolution MRA of diagnostic quality with velocity data comparable with TCD and 2D-PC. The combination of velocity information and fast high-resolution whole-brain morphologic angiograms makes PC HYPRFlow an attractive alternative to current MRA methods.
The Influence of Concrete Strength and Confinement Type on the Response of FRP-Confined Concrete Cylinders

This paper describes a series of tests on concrete cylinders confined by carbon fiber jackets. The primary variables in the investigation were the thickness of the jackets (and therefore the lateral confinement stress), the size of the cylinders, the loading speed, and the loading type (monotonic vs. cyclic) and the jacket type (individual layers or continuous wrap). Of these parameters, the lateral confining stress was found to have the greatest influence, but the coefficient for the concrete used was found to be slightly lower than the 4.1 that is implicit in ACI318-02. The cylinder size, the loading speed and the cyclic loading regimes were found to have essentially no influence on stress and strain at failure. The continuously wound jackets were found to initiate failure by delamination, rather than fracture of the fiber, and to lower the stress and strain at failure.
Variance In System Dynamics And Agent Based Modelling Using The SIR Model Of Infectious Disease

Classical deterministic simulations of epidemiological processes, such as those based on System Dynamics, produce a single result based on a fixed set of input parameters with no variance between simulations. Input parameters are subsequently modified on these simulations using Monte-Carlo methods, to understand how changes in the input parameters affect the spread of results for the simulation. Agent Based simulations are able to produce different output results on each run based on knowledge of the local interactions of the underlying agents and without making any changes to the input parameters. In this paper we compare the influence and effect of variation within these two distinct simulation paradigms and show that the Agent Based simulation of the epidemiological SIR (Susceptible, Infectious, and Recovered) model is more effective at capturing the natural variation within SIR compared to an equivalent model using System Dynamics with Monte-Carlo simulation. To demonstrate this effect, the SIR model is implemented using both System Dynamics (with Monte-Carlo simulation) and Agent Based Modelling based on previously published empirical data.