Miracle-dz/UniFAR-FTUs huggingface dataset:
Antisense Expression of an Arabidopsis Ran Binding Protein Renders Transgenic Roots Hypersensitive to Auxin and Alters Auxin-Induced Root Growth and Development by Arresting Mitotic Progress Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010

We cloned a cDNA encoding an Arabidopsis Ran binding protein, AtRanBP1c, and generated transgenic Arabidopsis expressing the antisense strand of the AtRanBP1c gene to understand the in vivo functions of the Ran/RanBP signal pathway. The transgenic plants showed enhanced primary root growth but suppressed growth of lateral roots. Auxin significantly increased lateral root initiation and inhibited primary root growth in the transformants at 10 pM, several orders of magnitude lower than required to induce these responses in wild-type roots. This induction was followed by a blockage of mitosis in both newly emerged lateral roots and in the primary root, ultimately resulting in the selective death of cells in the tips of both lateral and primary roots. Given the established role of Ran binding proteins in the transport of proteins into the nucleus, these findings are consistent with a model in which AtRanBP1c plays a key role in the nuclear delivery of proteins that suppress auxin action and that regulate mitotic progress in root tips.
Perceptions about the acceptability and prevalence of HIV testing and factors influencing them in different communities in South Africa

Abstract HIV counselling and testing (HCT) is considered important because it is an entry point to a comprehensive continuum of care for HIV/AIDS. The South African Department of Health launched an HCT campaign in April 2010, and this reached 13,269,746 people by June 2011, of which 16% tested HIV positive and 400,000 of those were initiated into antiretroviral treatment. The overall objective of this project was to gain insight into the general perceptions about HIV testing in the different South African communities. Factors influencing testing in these communities were also explored. Discussions with twelve focus groups (FG) of 8–12 participants each were conducted with male and female participants recruited from both urban formal and informal communities in Cape Town and Durban. Participants included four racial groups represented by different age groups as follows: adolescents (12–17 years), youth (18–24 years) and adults (25 years and older). Data were analyzed using thematic coding. Among the key themes that emerged from the findings were the inaccurate perception of risk, fear of testing HIV positive, stigma and discrimination. Participants from both African and Indian FGs reported being less likely to do self-initiated HIV testing and counselling, while those from the FG consisting of young whites were more likely to learn about their HIV status through blood donations and campus HIV testing campaigns. Most FGs said they were likely to test if they understood the testing process better and also if the results are kept confidential. The present findings reiterate the importance of spreading positive messages and ensuring confidentiality for HIV testing in a society where there is still some stigma associated with people living with HIV/AIDS. This can partly be accomplished by the continuation of the national HCT campaign, which has been a considerable success in the fight against HIV/AIDS in South Africa during the past two years.
Breast cancer detection by daughters of women with breast cancer.

PURPOSE This study was conducted to determine the frequency of breast self-examination (BSE), clinical breast examination, and mammography of adult daughters of women with breast cancer. Additionally, the relationships among frequency of self-examination, clinical examination, perceived risk, fear of breast cancer, and frequency of talking with their mothers about breast cancer were assessed. METHODS A retrospective, correlational descriptive design was used. Questionnaires were mailed to members of a breast cancer support group and to women diagnosed with breast cancer in one medical oncology practice. These women were asked to mail the questionnaires to their adult daughters. RESULTS There was a significant relationship between frequency of BSE and frequency of talking with mothers about breast cancer. Frequency of self-examination was related inversely to fear of breast cancer. Fear of breast cancer appears to act as a barrier to action whereas frequency of talking with their mothers about breast cancer seems to act as a cue to action in support of the Health Belief Model. CLINICAL IMPLICATIONS Healthcare providers should make every effort to optimize the practice of BSE in daughters of women with breast cancer. Only 52% reported performing BSE monthly, with the remaining 48% performing BSE less frequently or not at all. Thirty-one percent reported having no formal or printed instruction regarding BSE. Health professionals caring for women who have a family history of breast cancer should assess the educational needs of these women and provide opportunities for them to acquire and demonstrate skills. Periodic re-evaluation of BSE is needed to reinforce importance and demonstrate technique. The development of educational materials developed specifically for daughters of women with breast cancer may be useful in diminishing the perception of an unrealistically high risk of developing breast cancer. With the decrease in fear, which appears to be acting as a barrier to BSE in this group, better breast cancer detection practices in daughters may be realized. Counseling about realistic risk of developing breast cancer also may be useful in reducing the amount of fear of breast cancer in these women. This is an unnecessary burden for any woman to bear and may interfere with her optimal practice of breast cancer detection practices.
Water availability in +2°C and +4°C worlds

While the parties to the UNFCCC agreed in the December 2009 Copenhagen Accord that a 2°C global warming over pre-industrial levels should be avoided, current commitments on greenhouse gas emissions reductions from these same parties will lead to a 50 : 50 chance of warming greater than 3.5°C. Here, we evaluate the differences in impacts and adaptation issues for water resources in worlds corresponding to the policy objective (+2°C) and possible reality (+4°C). We simulate the differences in impacts on surface run-off and water resource availability using a global hydrological model driven by ensembles of climate models with global temperature increases of 2°C and 4°C. We combine these with UN-based population growth scenarios to explore the relative importance of population change and climate change for water availability. We find that the projected changes in global surface run-off from the ensemble show an increase in spatial coherence and magnitude for a +4°C world compared with a +2°C one. In a +2°C world, population growth in most large river basins tends to override climate change as a driver of water stress, while in a +4°C world, climate change becomes more dominant, even compensating for population effects where climate change increases run-off. However, in some basins where climate change has positive effects, the seasonality of surface run-off becomes increasingly amplified in a +4°C climate.
Cross-Priming of Cytotoxic T Cells Dictates Antigen Requisites for Modified Vaccinia Virus Ankara Vector Vaccines

ABSTRACT Recombinant vaccines based on modified vaccinia virus Ankara (MVA) have an excellent record concerning safety and immunogenicity and are currently being evaluated in numerous clinical studies for immunotherapy of infectious diseases and cancer. However, knowledge about the biological properties of target antigens to efficiently induce MVA vaccine-mediated immunity in vivo is sparse. Here, we examined distinct antigen presentation pathways and different antigen formulations contained in MVA vaccines for their capability to induce cytotoxic CD8+ T-cell (CTL) responses. Strikingly, we found that CTL responses against MVA-produced antigens were dominated by cross-priming in vivo, despite the ability of the virus to efficiently infect professional antigen-presenting cells such as dendritic cells. Moreover, stable mature protein was preferred to preprocessed antigen as the substrate for cross-priming. Our data are essential for improved MVA vaccine design, as they demonstrate the need for optimal adjustment of the target antigen properties to the intrinsic requirements of the delivering vector system.
Resampling Tamper Detection Based on JPEG Double Compression

JPEG compression and resampling operations appear frequently when image is tampered, hence the traces of JPEG compression and resampling are used to detect images. As JPEG compression and resampling operations affect the linear correlation between coefficients, so the traces of JPEG compression and the linear correlation are introduced when images are resampled and saved in JPEG format. Hence, the moment of DCT coefficient histogram are taken as the factor of JPEG compression, and due to the singular value decomposition can measure linear correlation between pixels well so that the mean value and variance of the singular values are extracted. At last, two types of features are extracted and trained by SVM. Experimental results show that proposed method has a good detection rate for resampling compression images, especially for rotation operation and the scale factor which greater than 1.
The Impact of HMOs on Hospital-Based Uncompensated Care

Managed care in general and HMOs in particular have become the vehicle of choice for controlling health care spending in the private sector. By several accounts, managed care has achieved its cost-containment objectives. At the same time, the percentage of Americans without health insurance coverage continues to rise. For-profit and not-for-profit hospitals have traditionally financed care for the uninsured from profits derived from patients with insurance. Thus the relationship between growth in managed care and HMOs, hospital "profits," and care for the uninsured represent an important policy question. Using national data over an eight-year period, we find that a ten-percentage point increase in managed care penetration is associated with a two-percentage point reduction in hospital total profit margin and a 0.6 percentage point decrease in uncompensated care.
Facial marks as biometric signatures to distinguish between identical twins

There exists a high degree of similarity in facial appearance between identical twins that makes it difficult for even the state of the art face matching systems to distinguish between them. Given the consistent increase in the number of twin births in recent decades, there is a need to develop alternate approaches to characterize facial appearance that can address this challenging task that has eluded even humans. In this paper, we investigate the usefulness of facial marks as biometric signatures with focus on the task of distinguishing between identical twins. We define and characterize a set of facial marks that are manually annotated by multiple observers. The geometric distribution of annotated facial marks along with their respective categories is used to characterize twin face images. The analysis is conducted on 295 twin face images acquired at the Twins Days Festival at Twinsburg, Ohio, in 2009. The results of our analysis signify the usefulness of distribution of facial marks as a biometric signature. In addition, contrary to prior research, our results indicate the existence of some degree of correlation between positions of facial marks belonging to identical twins.
In Vivo Selection of H1N2 Influenza Virus Reassortants in the Ferret Model

ABSTRACT Although the ferret model has been extensively used to study pathogenesis and transmission of influenza viruses, little has been done to determine whether ferrets are a good surrogate animal model to study influenza virus reassortment. It has been previously shown that the pandemic 2009 H1N1 (H1N1pdm) virus was able to transmit efficiently in ferrets. In coinfection studies with either seasonal H1N1 or H3N2 strains (H1N1s or H3N2s, respectively), the H1N1pdm virus was able to outcompete these strains and become the dominant transmissible virus. However, lack of reassortment could have been the result of differences in the cell or tissue tropism of these viruses in the ferret. To address this issue, we performed coinfection studies with recombinant influenza viruses carrying the surface genes of a seasonal H3N2 strain in the background of an H1N1pdm strain and vice versa. After serial passages in ferrets, a dominant H1N2 virus population was obtained with a constellation of gene segments, most of which, except for the neuraminidase (NA) and PB1 segments, were from the H1N1pdm strain. Our studies suggest that ferrets recapitulate influenza virus reassortment events. The H1N2 virus generated through this process resembles similar viruses that are emerging in nature, particularly in pigs.
The J-curve phenomenon revisited again: SPRINT outcomes favor target systolic blood pressure below 120 mmHg

SVERRE E. KJELDSEN, SUZANNE OPARIL, KRZYSZTOF NARKIEWICZ & THOMAS HEDNER Department of Cardiology, University of Oslo, Ullevaal Hospital, Oslo, Norway, Vascular Biology and Hypertension Program, University of Alabama, Birmingham, AL, USA, Department of Hypertension and Diabetology, Medical University of Gdansk, Gdansk, Poland, and Department of Medicine, University of Göteborg, Sahlgrenska Academy, Göteborg, Sweden
Sortase independent and dependent systems for acquisition of haem and haemoglobin in Listeria monocytogenes

We studied three Fur‐regulated systems of Listeria monocytogenes: the srtB region, that encodes sortase‐anchored proteins and a putative ABC transporter, and the fhu and hup operons, that produce putative ABC transporters for ferric hydroxamates and haemin (Hn)/haemoglobin (Hb) respectively. Deletion of lmo2185 in the srtB region reduced listerial [59Fe]‐Hn transport, and purified Lmo2185 bound [59Fe]‐Hn (KD = 12 nM), leading to its designation as a Hn/Hb binding protein (hbp2). Purified Hbp2 also acted as a haemophore, capturing and supplying Hn from the environment. Nevertheless, Hbp2 only functioned in [59Fe]‐Hn transport at external concentrations less than 50 nM: at higher Hn levels its uptake occurred with equivalent affinity and rate without Hbp2. Similarly, deletion of sortase A had no effect on ferric siderophore or Hn/Hb transport at any concentration, and the srtA‐independence of listerial Hn/Hb uptake distinguished it from comparable systems of Staphylococcus aureus. In the cytoplasmic membrane, the Hup transporter was specific for Hn: its lipoprotein (HupD) only showed high affinity for the iron porphyrin (KD = 26 nM). Conversely, the FhuD lipoprotein encoded by the fhu operon had broad specificity: it bound both ferric siderophores and Hn, with the highest affinity for ferrioxamine B (KD = 123 nM). Deletions of Hup permease components hupD, hupG or hupDGC reduced Hn/Hb uptake, and complementation of ΔhupC and ΔhupG by chromosomal integration of hupC+ and hupG+ alleles on pPL2 restored growth promotion by Hn/Hb. However, ΔhupDGC did not completely eliminate [59Fe]‐Hn transport, implying the existence of another cytoplasmic membrane Hn transporter. The overall KM of Hn uptake by wild‐type strain EGD‐e was 1 nM, and it occurred at similar rates (Vmax = 23 pmol 109 cells−1 min−1) to those of ferric siderophore transporters. In the ΔhupDGC strain uptake occurred at a threefold lower rate (Vmax = 7 pmol 109 cells−1 min−1). The results show that at low (< 50 nM) levels of Hn, SrtB‐dependent peptidoglycan‐anchored proteins (e.g. Hbp2) bind the porphyrin, and HupDGC or another transporter completes its uptake into the cytoplasm. However, at higher concentrations Hn uptake is SrtB‐independent: peptidoglycan‐anchored binding proteins are dispensable because HupDGC directly absorbs and internalizes Hn. Finally, ΔhupDGC increased the LD50 of L. monocytogenes 100‐fold in the mouse infection model, reiterating the importance of this system in listerial virulence.
Contribution of the Primate Superior Colliculus to Inhibition of Return

The phenomenon of inhibition of return (IOR) has generated considerable interest in cognitive neuroscience because of its putative functional role in visual search, that of placing inhibitory tags on objects that have been recently inspected so as to direct further search to novel items. Many behavioral parameters of this phenomenon have been clearly delineated, and based on indirect but converging evidence, the widely held consensus is that the midbrain superior colliculus (SC) is involved in the generation of IOR. We had previously trained monkeys on a saccadic IOR task and showed that they displayed IOR in a manner similar to that observed in humans. Here we recorded the activity of single neurons in the superficial and intermediate layers of the SC while the monkeys performed this IOR task. We found that when the target was presented at a previously cued location, the stimulus-related response was attenuated and the magnitude of this response was correlated with subsequent saccadic reaction times. Surprisingly, this observed attenuation of activity during IOR was not caused by active inhibition of these neurons because (a) they were, in fact, more active following the presentation of the cue in their response field, and (b) when we repeated the same experiment while using the saccadic response time induced by electrical micro-stimulation of the SC to judge the level of excitability of the SC circuitry during the IOR task, we found faster saccades were elicited from the cued location. Our findings demonstrate that the primate SC participates in the expression of IOR; however, the SC is not the site of the inhibition. Instead, the reduced activity in the SC reflects a signal reduction that has taken place upstream.
Umer Javed Frequency hopping in wireless sensor networks

of the Master’s thesis Author: Umer Javed Name of the thesis: Frequency hopping in wireless sensor networks Date: March 2009 Number of pages: 58 Faculty: Faculty of Electronics, Communications and Automation Professorship: S-72 Communications Engineering Supervisor: Professor Riku Jäntti Instructor: M.Sc. Aamir Mahmood Wireless sensor networks (WSNs) are nowadays being used to collectively gather and spread information in different kinds of applications, for military, civilian, environmental as well as commercial purposes. Therefore the proper functioning of WSNs under different kinds of environmental conditions, especially hostile environments, is a must and a lot of research currently ongoing. The problems related to the initialization and deployment of WSNs under harsh and resource limited conditions are investigated in this thesis. Frequency hopping (FH) is a spread spectrum technique in which multiple channels are used, or hoped, for communications across the network. This mitigates the worst effects of interference with frequency agile communication systems rather than by brute force approaches. FH is a promising technique for achieving the coexistence of sensor networks with other currently existing wireless systems, and it is successful within the somewhat limited computational capabilities of the sensor nodes hardware radios. In this thesis, a FH scheme for WSNs is implemented for a pair of nodes on an application layer. The merits and demerits of the scheme are studied for different kinds of WSN environments. The implementation has been done using a Sensinode NanoStack, a communication stack for internet protocol (IP) based wireless sensor networks and a Sensinode Devkit, for an IPv6 over low power wireless personal area network (6LoWPAN). The measurements are taken from the developed test bed and channel simulator for different kinds of scenarios. The detailed analysis of the FH scheme is done to determine its usefulness against interference from other wireless systems, especially wireless local area networks (WLANs), and the robustness of the scheme to combat fading or frequency selective fading.
Serum Metabolomic Profiling of All-Cause Mortality: A Prospective Analysis in the Alpha-Tocopherol, Beta-Carotene Cancer Prevention (ATBC) Study Cohort

Tobacco use, hypertension, hyperglycemia, overweight, and inactivity are leading causes of overall and cardiovascular disease (CVD) mortality worldwide, yet the relevant metabolic alterations responsible are largely unknown. We conducted a serum metabolomic analysis of 620 men in the Alpha-Tocopherol, Beta-Carotene Cancer Prevention Study (1985-2013). During 28 years of follow-up, there were 435 deaths (197 CVD and 107 cancer). The analysis included 406 known metabolites measured with ultra-high-performance liquid chromatography/mass spectrometry-gas chromatography/mass spectrometry. We used Cox regression to estimate mortality hazard ratios for a 1-standard-deviation difference in metabolite signals. The strongest associations with overall mortality were N-acetylvaline (hazard ratio (HR) = 1.28; P < 4.1 × 10-5, below Bonferroni statistical threshold) and dimethylglycine, 7-methylguanine, C-glycosyltryptophan, taurocholate, and N-acetyltryptophan (1.23 ≤ HR ≤ 1.32; 5 × 10-5 ≤ P ≤ 1 × 10-4). C-Glycosyltryptophan, 7-methylguanine, and 4-androsten-3β,17β-diol disulfate were statistically significantly associated with CVD mortality (1.49 ≤ HR ≤ 1.62, P < 4.1 × 10-5). No metabolite was associated with cancer mortality, at a false discovery rate of <0.1. Individuals with a 1-standard-deviation higher metabolite risk score had increased all-cause and CVD mortality in the test set (HR = 1.4, P = 0.05; HR = 1.8, P = 0.003, respectively). The several serum metabolites and their composite risk score independently associated with all-cause and CVD mortality may provide potential leads regarding the molecular basis of mortality.