Miracle-dz/UniFAR-FTUs huggingface dataset:
Small-scale dispersal and population structure in stream-living brown trout (Salmo trutta) inferred by mark-recapture, pedigree reconstruction, and population genetics

Many animals move among habitats, and even small-scale dispersal of individuals between habitat patches may have strong implications for population dynamics and structure. Here, we use long-term mark-recapture data combined with extensive genotyping and parentage assignment to investigate the importance of small-scale location change of resident brown trout (Salmo trutta) in a small stream (1500 m). During the first summer, juvenile fish dispersed downstream (mean displacement 200 m), with smaller juveniles dispersing longer distances. Downstream movement was also predominant dur- ing the first winter, but older fish moved little. This limited dispersal resulted in a significant isolation-by-distance structure for ages 1 and 2, but not for older age groups or for the mature fish. Individual pairwise relatedness coefficients decreased with waterway distance for mature fish during the 2002 and 2003 spawning seasons, but only weakly. Overall, between-site genetic differentiation was stronger for the younger age classes, and the signal decayed with age, indicating that the genetic structure observed in the stream is mainly driven by spatial aggregation of close relatives. Resume : De nombreux animaux se deplacent d'un habitat a l'autre et la dispersion, meme a petite echelle, d'individus en- tre differentes parcelles d'habitat peut avoir d'importantes repercussions sur la dynamique et la structure des populations. Nous utilisons des donnees de marquage-recapture a long terme combinees au genotypage et a la determination de la filia- tion de nombreux specimens pour etudier l'importance des changements d'emplacement a petite echelle de la truite de mer (Salmo trutta) dans un petit cours d'eau (1500 m). Au cours du premier ete, les poissons juveniles se sont disperses vers l'a- val (deplacement moyen de 200 m), les juveniles plus petits se dispersant sur de plus grandes distances. Les deplacements vers l'aval etaient egalement predominants durant le premier hiver, bien que les poissons plus âges se soient peu deplaces. Cette dispersion limitee s'est traduite par une structure d'isolement par la distance significative pour les groupes d'un et deux ans d'âge, mais non pour les groupes de juveniles plus âges ou les poissons matures. Les coefficients de correlation par paire individuels montraient une faible diminution en fonction de la distance le long du cours d'eau pour les poissons matures durant les periodes de frai de 2002 et 2003. Dans l'ensemble, la differentiation genetique entre emplacements etait plus forte pour les classes d'âges plus jeunes, le signal diminuant avec l'augmentation de l'âge, ce qui indique que la struc- ture genetique observee dans le cours d'eau est principalement controlee par l'agregation spatiale de parents proches. (Traduit par la Redaction)
The relationship between riboflavin and plasma total homocysteine in the Framingham Offspring cohort is influenced by folate status and the C677T transition in the methylenetetrahydrofolate reductase gene.

Methylenetetrahydrofolate reductase (MTHFR) catalyzes the synthesis of 5-methyltetrahydrofolate, the methyl donor for remethylation of homocysteine to methionine. The C677T MTHFR polymorphism is associated with mild hyperhomocysteinemia, but only in the presence of low folate status. Because MTHFR contains flavin adenine dinucleotide (FAD) as a prosthetic group, riboflavin status may also influence homocysteine metabolism. The objective of this study was to examine the association between riboflavin status and fasting plasma total homocysteine (tHcy) concentration while also considering MTHFR C677T genotype and folate status. The study was conducted using fasting plasma samples (n = 450) from the fifth examination of the Framingham Offspring Study cohort. All persons with the TT genotype and age- and sex-matched sets of individuals with the CT and CC genotypes were selected for determination of plasma riboflavin and flavin mono- and dinucleotide levels. Plasma riboflavin was associated with tHcy concentrations, but the association was largely confined to persons with plasma folate <12.5 nmol/L and TT genotype. In these persons, the mean tHcy among individuals with riboflavin levels <6.89 nmol/L was 14.5 micromol/L, whereas the mean tHcy for those with riboflavin > or = 11 nmol/L was 11.6 micromol/L (P-trend <0.03). Plasma flavin nucleotides were unrelated to tHcy concentrations. Our data suggest that riboflavin status may affect homocysteine metabolism, but only in a small segment of the population who have both low folate status and are homozygotes for the MTHFR C677T mutation.
Optimization of friction stir welding parameters using multiple response surface methodology

Improving quality in today’s complicated industrial systems is gaining more and more importance every day. Since applying these systems costs a lot, companies should try to offer the best outcomes and processes possible. One of the products most applied is Tailor Welding Blanks, which is widely used in automobile, aerospace, and other industries. One of the best methods of producing Tailor Welding Blanks is Friction Stir Welding. Using this technology, sheets dissimilar in material and thickness can be joined. In this paper, the possibility of welding thin sheets of 5083-H12 and 6061-T6 aluminum alloy by Friction Stir Welding with the thickness of 1.5 mm is examined. To detect the impact of Friction Stir Welding parameters, i.e. rotational speed (r/min), linear speed (mm/ min), shoulder diameter (mm), and tilt angle (°), a Box-Behnken design was used and using multiple Response Surface Methodology values of robust optimization of tensile strength and elongation were derived. The optimization and experiment results were then compared. The results of the comparison showed a good correspondence.
Exploring the Consumer Behavior of Intention to Purchase Green Products in Belt and Road Countries: An Empirical Analysis

This study explored the consumer behavior of intention to purchase green products based on a decision-making model that integrates cognitive attributes, affective attributes, and behavioral intentions in Belt and Road countries. The questionnaires were collected from customers who previously purchased green products; this study distributed the questionnaires at the appliance section of the department stores and collected 227 valid responses. Environmental attitude, product attitude, social influence, and perceived monetary value positively affected purchase intention; among these attributes, product attitude most substantially affected purchase intention. Cognitive values (collective and individual) significantly and positively affected environmental and product attitudes. Regarding individual environmental literacy, objective knowledge did not significantly affect environmental attitude, whereas subjective knowledge positively and significantly affected product attitude. In addition, both environmental awareness and government role (extrinsic motivating attributes) significantly and positively affected environmental and product attitudes for sustainable consumption. Media exposure also exerted a significant positive effect on environmental attitude for reducing, reusing and recycling emissions.
Metaphylactic effect of minerals on the immune response, biochemical variables and antioxidant status of newborn calves

The aim of this study was to evaluate whether injectable zinc and copper affect host immune responses and antioxidant status of newborn calves. For this study, 19 newborn calves were divided into two groups. The control group consisted of 10 animals; and the treated group consisted of nine animals that received copper edetate (Cu-ed) and zinc edetate (Zn-ed) subcutaneously at the first day of life at doses of 0.3 mg/kg and 1.0 mg/kg respectively. Blood and faecal samples were collected for laboratory analyses (seric biochemistry, proteinogram, antioxidant enzymes and parasitological examination) on days 10, 20 and 30 after birth. On day 10, treated animals showed increased levels of total proteins, as well as increased globulin levels compared to the control group, a finding probably related to the increase in ceruloplasmin and IgG heavy chain. Thirty days after mineral metaphylactic administration, IgG light chain and acid glycoprotein levels significantly increased in treated animals (p < .05). There were no significant differences between groups regarding the biochemical analyses (triglycerides, cholesterol, glucose and urea). On the other hand, the superoxide dismutase and catalase activities increased on day 10 after treatment. In the control group, eight animals showed severe diarrhoea and one died 8 days after birth. Two animals from this group showed mild diarrhoea. Only three treated animals had severe diarrhoea, and six showed signs of mild diarrhoea. All animals that showed severe diarrhoea (control = 8; treated = 3) had hyperthermia (over 39.5°C), and therefore, antibiotic therapy was administered (sulfadiazine and trimethoprim) for five consecutive days. In summary, Zn-ed and Cu-ed decreased the frequency and intensity of diarrhoea, modulated superoxide dismutase (SOD) and catalase (CAT) enzymes and also heightened the immune responsiveness of newborn calves, suggesting a new approach to improve cattle performance and minimize the occurrence of diarrhoea.
Thermodynamics and NMR studies on Duck, Heron and Human HBV encapsidation signals

Hepatitis B virus (HBV) replication is initiated by binding of its reverse transcriptase (P) to the apical stem-loop (AL) and primer loop (PL) of epsilon, a highly conserved RNA element at the 5′-end of the RNA pregenome. Mutation studies on duck/heron and human in vitro systems have shown similarities but also differences between their P–epsilon interaction. Here, NMR and UV thermodynamic data on AL (and PL) from these three species are presented. The stabilities of the duck and heron ALs were found to be similar, and much lower than that of human. NMR data show that this low stability stems from an 11-nt internal bulge destabilizing the stem of heron AL. In duck, although structured at low temperature, this region also forms a weak point as its imino resonances broaden to disappearance between 30 and 35°C well below the overall AL melting temperature. Surprisingly, the duck- and heron ALs were both found to be capped by a stable well-structured UGUU tetraloop. All avian ALs are expected to adhere to this because of their conserved sequence. Duck PL is stable and structured and, in view of sequence similarities, the same is expected for heron - and human PL.
Grb7 gene amplification and protein expression by FISH and IHC in ovarian cancer.

OBJECTIVE Overexpression of growth factor receptor-bound protein 7 (Grb7) has been found in numerous human cancers. The aim of this study was to evaluate the correlation between Grb7 gene amplification and protein expression in ovarian cancer (OC). METHODS We use Tissue Microarray (TMA) respectively to detect the gene amplification and protein expression of Grb7 in 90 cases OC and 10 control specimens of normal ovarian tissues by IHC and FISH. RESULTS The Grb7 protein expression by IHC analysis was observed in 52/90 (57.8%) OC with 3 cases (3.3%) scored 3(+) and 9 cases (10%) scored 2(+) Grb7 gene amplification by FISH analysis was successfully detectable in 6 specimens with a positive rate of 6.8% (6/88) in which immunostaining 3(+), 2(+) and negative (1(+)/0) expressions of Grb7 were 100.0% (3/3), 11.1% (1/9) and 2.6% (2/76), respectively. Our data exhibited that the IHC and FISH results had a good consistency between Grb7 gene amplification and Grb7 protein expression (Kappa = 0.651, P < 0.001). Both the results of IHC and FISH revealed that Grb7 did not seem to have a role in OC clinicopathology. CONCLUSION There is a close relationship between Grb7 gene amplification and GRB7 protein overexpression in human OC. IHC might have limited diagnostic value especially in these tumors and especially in characterizing genetically diverse borderline cases, FISH could be superior to IHC.
Test and simulation for dry friction characteristics of metallic materials

A single-degree-of-freedom spring damper model and a Mindlin theoretical model were analyzed and a test-bed for metal's dry friction characteristics was built to gain the hysteresis curve,equivalent stiffness and equivalent damp.With the growing of the amplitude of relative displacement between interfaces,the equivalent stiffness of the friction force descends and the descending trend becomes gentle;while the equivalent damp of the friction force ascends and gets its peak when the nondimensional relative displacement amplitude equals to 2.0,then it descends with the increasing displacement amplitude.The comparison between the test and theoretical data indicates that when the nondimensional relative displacement amplitude is less than 1.0,the theory model cannot describe the system's stiffness and damping characteristics.A corresponding FEM model was built in MARC.The consistency between the results of the FEM model and test data validates the FEM prediction method,which can help analyze the real material's dry friction characteristics.
Dislocation emission around nanoindentations on a (001) fcc metal surface studied by scanning tunneling microscopy and atomistic simulations.

We present a combined study by scanning tunneling microscopy and atomistic simulations of the emission of dissociated dislocation loops by nanoindentation on a (001) fcc surface. The latter consist of two stacking-fault ribbons bounded by Shockley partials and a stair-rod dislocation. These dissociated loops, which intersect the surface, are shown to originate from loops of interstitial character emitted along the <110> directions and are usually located at hundreds of angstroms away from the indentation point. Simulations reproduce the nucleation and glide of these dislocation loops.
Hydrogen concentration and bonding configuration in polycrystalline diamond films: From micro-to nanometric grain size

The present work studies the incorporation of hydrogen and its bonding configuration in diamond films composed of diamond grains of varying size which were deposited by three different methods: hot filament (HF), microwave (MW), and direct current glow discharge (dc GD) chemical vapor deposition (CVD). The size of diamond grains which constitute the films varies in the following way: hundreds of nanometers in the case of HF CVD (“submicron size,” ∼300nm), tens of nanometers in the case of MW CVD (3–30nm), and a few nanometers in the case of dc GD CVD (“ultrananocrystalline diamond,” ∼5nm). Raman spectroscopy, secondary ion mass spectroscopy, and high resolution electron energy loss spectroscopy (HR-EELS) were applied to investigate the hydrogen trapping in the films. The hydrogen retention of the diamond films increases with decreasing grain size, indicating that most likely, hydrogen is bonded and trapped in grain boundaries as well as on the internal grain surfaces. Raman and HR-EELS analyses show that .
Longitudinal changes in brain morphology from 4 weeks to 12 months after mild traumatic brain injury: Associations with cognitive functions and clinical variables

ABSTRACT Objective: To investigate longitudinal changes in cortical and subcortical volumes in patients with mild traumatic brain injury (MTBI) and to evaluate whether such changes were associated with self-reported post-concussive symptoms, global functional outcomes and neuropsychological functioning. Methods: This was a prospecitve, longitudinal cohort study of patients with complicated (i.e presence of intracranial abnormalities on the day of injury CT) and uncomplicated MTBI (i.e, absence of intracranial abnormalities). Magnetic resonance imaging (MRI) was performed at approximately 4 weeks and 12 months. We utilized a 3T MRI system, cortical reconstruction and volumetric segmentation by FreeSurfer software. We included 33 patients with uncomplicated and 29 with complicated MTBI, who were aged 16–65 years. Results: 12 months after MTBI, significant within-group volume reductions were detected in the left accumbens area and right caudate nucleus for both patients groups, but no significant differences between the groups were revealed. No associations between volumetric variables and post-concussive symptoms or global functioning were found. The left temporal thickness was significantly associated with executive functioning. Conclusion: Structural subcortical alterations occur after complicated and uncomplicated MTBIs but these findings were not associated with symptoms burden or functional outcomes. Nonetheless, worse executive functioning was found in patients with shrinkage of the left temporal lobe.
Natural copepods are superior to enriched artemia nauplii as feed for halibut larvae (Hippoglossus hippoglossus) in terms of survival, pigmentation and retinal morphology: relation to dietary essential fatty acids.

Replicate groups of halibut larvae were fed to d 71 post-first feeding (PFF) either the marine copepod, Eurytemora velox, or Artemia nauplii doubly enriched with the marine chromist or golden algae, Schizochytrium sp. , (Algamac 2000) and a commercial oil emulsion (SuperSelco). The fatty acid compositions of eyes, brains and livers from larvae fed the two diets were measured, and indices of growth, eye migration and skin pigmentation were recorded along with histological examinations of eye and liver. The docosahexaenoic acid [22:6(n-3); DHA]/eicosapentaenoic acid [20:5(n-3); EPA] ratios in Artemia nauplii enriched with the SuperSelco and Algamac 2000 were 0.4 and 1.0, respectively. The E. velox copepods were divided into two size ranges (125-250 and 250-400 microm) with the smaller size range containing the highest level of (n-3) highly unsaturated fatty acids (HUFA). The DHA/EPA ratios for the two size ranges of copepods were 2.0 and 0.9, respectively. The total lipids of eyes, brains and livers of larvae fed copepods had higher levels of DHA and lower levels of EPA than those of larvae fed enriched Artemia. The percentage of survival of the halibut larvae was significantly higher when copepods rather than enriched Artemia nauplii were fed, but larval specific growth rates did not differ. The indices of eye migration were high and not significantly different in larvae fed the two diets, but the percentage of larvae undergoing successful metamorphosis (complete eye migration and dorsal pigmentation) was higher in larvae fed copepods (40%) than in larvae fed enriched Artemia (4%). The rod/cone ratios in histological sections of the retina were 2.5 +/- 0.7 in larvae fed copepods and 1.3 +/- 0.6 in larvae fed enriched Artemia (P < 0.01). Histological examination of the livers and intestines of the larvae were consistent with better assimilation of lipid from copepods than lipid from Artemia nauplii up to 46 d post-first feeding. Thus, marine copepods are superior to enriched Artemia as food for halibut larvae in terms of survival, eye development and pigmentation, and this superiority can be related to the level of DHA in the feed.
A Test of Simpson’s “Rule of the Survival of the Relatively Unspecialized” Using Fossil Crinoids

Temporally long‐ranging (=long‐lived) taxa have been postulated to have unusual properties that aid their prolonged geologic survival. Past studies have examined dispersal capabilities, geographic ranges, and single‐character morphological adaptations as factors that may contribute to geologic longevity. Here, I test whether long‐lived fossil crinoid taxa are morphologically unusual using a whole suite of morphological characters. I define long‐lived taxa in several explicit, comparative ways. I find that long‐lived crinoid genera and families are often less distant from mean morphologies of their crinoid orders than their shorter‐lived relatives; that is, they are relatively less specialized. I also compare the morphology of crinoid genera relative to basal members of their respective orders; mean morphological distances of long‐lived genera from basal morphologies are seldom distinct from those of their shorter‐lived relatives. I observe that long‐lived crinoid genera are less distant from mean morphologies of their temporal cohorts compared with shorter‐lived genera but not in a statistically significant manner. I conclude that long‐lived crinoids are relatively unspecialized, in the sense that they are relatively closer to mean morphologies of their taxonomic groups.
Predicting clinical progression in multiple sclerosis with the magnetic resonance disease severity scale.

BACKGROUND Individual magnetic resonance imaging (MRI) disease severity measures, such as atrophy or lesions, show weak relationships to clinical status in patients with multiple sclerosis (MS). OBJECTIVE To combine MS-MRI measures of disease severity into a composite score. DESIGN Retrospective analysis of prospectively collected data. SETTING Community-based and referral subspecialty clinic in an academic hospital. PATIENTS A total of 103 patients with MS, with a mean (SD) Expanded Disability Status Scale (EDSS) score of 3.3 (2.2), of whom 62 (60.2%) had the relapsing-remitting, 33 (32.0%) the secondary progressive, and 8 (7.8%) the primary progressive form. MAIN OUTCOME MEASURES Brain MRI measures included baseline T2 hyperintense (T2LV) and T1 hypointense (T1LV) lesion volume and brain parenchymal fraction (BPF), a marker of global atrophy. The ratio of T1LV to T2LV (T1:T2) assessed lesion severity. A Magnetic Resonance Disease Severity Scale (MRDSS) score, on a continuous scale from 0 to 10, was derived for each patient using T2LV, BPF, and T1:T2. RESULTS The MRDSS score averaged 5.1 (SD, 2.6). Baseline MRI and EDSS correlations were moderate for BPF, T1:T2, and MRDSS and weak for T2LV. The MRDSS showed a larger effect size than the individual MRI components in distinguishing patients with the relapsing-remitting form from those with the secondary progressive form. Models containing either T2LV or MRDSS were significantly associated with disability progression during the mean (SD) 3.2 (0.3)-year observation period, when adjusting for baseline EDSS score. CONCLUSION Combining brain MRI lesion and atrophy measures can predict MS clinical progression and provides the basis for developing an MRI-based continuous scale as a marker of MS disease severity.
Reduced Graphene Oxides: Influence of the Reduction Method on the Electrocatalytic Effect towards Nucleic Acid Oxidation

For the first time a critical analysis of the influence that four different graphene oxide reduction methods have on the electrochemical properties of the resulting reduced graphene oxides (RGOs) is reported. Starting from the same graphene oxide, chemical (CRGO), hydrothermal (hTRGO), electrochemical (ERGO), and thermal (TRGO) reduced graphene oxide were produced. The materials were fully characterized and the topography and electroactivity of the resulting glassy carbon modified electrodes were also evaluated. An oligonucleotide molecule was used as a model of DNA electrochemical biosensing. The results allow for the conclusion that TRGO produced the RGOs with the best electrochemical performance for oligonucleotide electroanalysis. A clear shift in the guanine oxidation peak potential to lower values (~0.100 V) and an almost two-fold increase in the current intensity were observed compared with the other RGOs. The electrocatalytic effect has a multifactorial explanation because the TRGO was the material that presented a higher polydispersity and lower sheet size, thus exposing a larger quantity of defects to the electrode surface, which produces larger physical and electrochemical areas.