Miracle-dz/UniFAR-FTUs huggingface dataset:
Impact of 3 Common ABCA1 Gene Polymorphisms on Optimal vs Non-Optimal Lipid Profile in Greek Young Nurses

Objective: This study is in line with two previous ones from our group. They evaluated the influence of ATP-binding cassette transporter A1 (ABCA1) gene polymorphisms [such as rs2230806 (R219K), rs2230808 (R1587K) and rs4149313 (I883M)] on the human lipid profile (defined as Optimal and Non-Optimal). Methods: The present study included 447 unrelated young women and men self-reported as being healthy and that attended the University of Nursing of Technological and Educational Institution. All subjects were genotyped and the ABCA1 polymorphisms (R219K, R1587K and I883M) were recorded. According to lipid profile [total cholesterol, triglyceride, high-density lipoprotein cholesterol and low-density lipoprotein cholesterol (LDL-C)] the subjects were separated into those with optimal lipid profile (Optimal Group, n=209) and Non-Optimal Group (n=238). Results: No statistical differences were observed in the distribution of R219K, R1587K and I883M polymorphisms according to the lipid profile (p>0.05 in all cases). No statistical differences were observed in the distribution of R219K, R1587K and I883M polymorphisms according to sex (p>0.05 in all cases). However, Logistic Regression revealed that subjects with RK (R1587K polymorphism) genotype had 69% increased risk on average of having LDL-C above normal limits as compared with those with RR genotype. Similarly, subjects with K allele (R1587K polymorphism) had 59% increased risk on average of having LDL-C above normal limits compared with those with R allele. Conclusion: These findings suggest that R1587K polymorphism of ABCA1 gene may influence the lipid profile. However, this needs to be confirmed by larger studies.
Nonassociative plasticity alters competitive interactions among mixture components in early olfactory processing

Experience‐related plasticity is an essential component of networks involved in early olfactory processing. However, the mechanisms and functions of plasticity in these neural networks are not well understood. We studied nonassociative plasticity by evaluating responses to two pure odors (A and X) and their binary mixture using calcium imaging of odor‐elicited activity in output neurons of the honey bee antennal lobe. Unreinforced exposure to A or X produced no change in the neural response elicited by the pure odors. However, exposure to one odor (e.g. A) caused the response to the mixture to become more similar to that of the other component (X). We also show in behavioral analyses that unreinforced exposure to A caused the mixture to become perceptually more similar to X. These results suggest that nonassociative plasticity modifies neural networks in such a way that it affects local competitive interactions among mixture components. We used a computational model to evaluate the most likely targets for modification. Hebbian modification of synapses from inhibitory local interneurons to projection neurons most reliably produced the observed shift in response to the mixture. These results are consistent with a model in which the antennal lobe acts to filter olfactory information according to its relevance for performing a particular task.
A Sense-Based Translation Model for Statistical Machine Translation

The sense in which a word is used determines the translation of the word. In this paper, we propose a sense-based translation model to integrate word senses into statistical machine translation. We build a broad-coverage sense tagger based on a nonparametric Bayesian topic model that automatically learns sense clusters for words in the source language. The proposed sense-based translation model enables the decoder to select appropriate translations for source words according to the inferred senses for these words using maximum entropy classifiers. Our method is significantly different from previous word sense disambiguation reformulatedfor machine translation in that the latter neglects word senses in nature. We test the effectiveness of the proposed sensebased translation model on a large-scale Chinese-to-English translation task. Results show that the proposed model substantially outperforms not only the baseline but also the previous reformulated word sense disambiguation.
Wear Studies on Metal Matrix Composites: a Taguchi Approach

An attempt has been made to study the influence of wear parameters like applied load, sliding speed, sliding distance and percentage of reinforcement on the dry sliding wear of the metal matrix composites. A plan of experiments,based on techniques of Taguchi, was pedormed to acquire data in controlled way. An orthogonal array and the analysis of variance were employed to investigate the influence of process parameters on the wear of composites. The objective is to establish a correlation between dry sliding wear of composites and wear parameters. These correlations were obtained by multiple regressions. Finally, confirmation tests were conducted to verify the experimental results foreseen from the mentioned correlations.
Thalamic calcification in vitamin D receptor knockout mice

Vitamin D is a steroid hormone with many important functions in the brain, mediated through the nuclear vitamin D receptor. Here, we report that aging nuclear vitamin D receptor knockout mice demonstrate a symmetric thalamic calcification with numerous Ca/P-containing laminated bodies. These results are consistent with clinical findings showing brain calcification in patients with vitamin D deficiency. Our results suggest that nuclear vitamin D receptor deficiency leads to brain mineralization in vitamin D receptor knockout mice, which may represent an experimental model of intracranial calcification.
Past pollen production reconstructed from needle production in Pinus sylvestris at the northern timberline: a tool for evaluating palaeoclimate reconstructions

Annual needle production (PROD) of Scots pine (Pinus sylvestris L.) and pine pollen accumulation rates (PAR) are compared along a 5-site transect from the Arctic Circle to the northern timberline. PROD is calculated using the Needle Trace Method (NTM). PAR is monitored by two series of pollen traps, located in the centres of mires and within forests, respectively. There is a strong year-to-year agreement in PAR and PROD between the sites for the common 19-year period for which both proxies are available. Mean July temperature of the previous year (TJUL–1) correlates statistically significantly with PROD at all five sites and with PAR in the four northernmost sites. There is also a significant relationship between TJUN–1 and PROD at all sites, and TJUN and PAR at the two northernmost sites. PROD and PAR correlate most strongly in the three near tree line sites, where PROD explains up to 51% of the variation in PAR. On the basis of the calibration between PROD, PAR and TJUL–1, PROD and TJUL–1 are used to reconstruct past PAR. That such a reconstruction is realistic is supported by its agreement with the pollen record for 1982–2000 and with records of male flowering for the period 1956–1973. The use of PROD in reconstructing past PAR can help in interpreting the fossil pollen signal in terms of climate rather than vegetation change and in evaluating the high-resolution dating of peat profiles and calculations of the rate of peat accumulation.
Mathematics and Computer Science: Coping with Finiteness

By presenting these examples, I have tried to illustrate four main points. 1) Finite numbers can be really enormous, and the known universe is very small. Therefore the distinction between finite and infinite is not as relevant as the distinction between realistic and unrealistic. 2) In many cases there are subtle ways to solve very large problems quickly, in spite of the fact that they appear at first to require examination of too many possibilities. 3) There are also cases where we can prove that a fairly natural problem is intrinsically hard, far beyond our conceivable capabilities. 4) It takes a good deal of skill to decide whether a given problem is in the easy or hard class; but even if a problem does turn out to be hard there are useful and interesting ways to change it into one that can be done satisfactorily.
How to Play ANY Mental Game Over the Net Concurrently composable secure computation without setup assumptions

We construct a protocol for general multi-party computation that remains secure even if executed concurrently with multiple copies of itself and of arbitrary other protocols. This is the first such construction that is based on standard cryptographic assumptions and does not require setup conditions such as the existence of a common reference string. Furthermore, our protocol utilizes only a constant number of communication rounds and remains secure also with respect to adaptive adversaries (without using memory erasures). The security of our protocol is demonstrated by a simulator with a quasi-polynomial simulation overhead, as opposed to the standard notion of polynomial simulation. However, quasipolynomial simulation still provides sufficient security for almost all applications. Furthermore, it was previously shown that there does not exist such a protocol with polynomial simulation (Lindell, FOCS ’03).
Mosaic DNA Imports with Interspersions of Recipient Sequence after Natural Transformation of Helicobacter pylori

Helicobacter pylori colonizes the gastric mucosa of half of the human population, causing gastritis, ulcers, and cancer. H. pylori is naturally competent for transformation by exogenous DNA, and recombination during mixed infections of one stomach with multiple H. pylori strains generates extensive allelic diversity. We developed an in vitro transformation protocol to study genomic imports after natural transformation of H. pylori. The mean length of imported fragments was dependent on the combination of donor and recipient strain and varied between 1294 bp and 3853 bp. In about 10% of recombinant clones, the imported fragments of donor DNA were interrupted by short interspersed sequences of the recipient (ISR) with a mean length of 82 bp. 18 candidate genes were inactivated in order to identify genes involved in the control of import length and generation of ISR. Inactivation of the antimutator glycosylase MutY increased the length of imports, but did not have a significant effect on ISR frequency. Overexpression of mutY strongly increased the frequency of ISR, indicating that MutY, while not indispensable for ISR formation, is part of at least one ISR-generating pathway. The formation of ISR in H. pylori increases allelic diversity, and contributes to the uniquely low linkage disequilibrium characteristic of this pathogen.
Aortic valve repair versus replacement in bicuspid aortic valve disease.

BACKGROUND AND AIM OF THE STUDY The study aim was to compare the results of aortic valve repair and replacement with biological valves in adult patients with aortic insufficiency (AI) caused by congenital bicuspid aortic valve (BAV) METHODS: Forty-four patients who had aortic valve repair were matched for age and left ventricular function to 44 patients who had aortic valve replacement (AVR) with biological valves. Patients were followed annually using echocardiography. The mean follow up was 2.6 +/- 2.1 years for the repair group, and 3.5 +/- 2.1 years for the replacement group. Follow up was complete. RESULTS There was no operative or late death in either group. Early postoperative echocardiography showed trace or no AI in 35 patients and mild AI in nine who had repair, and trace or no AI in 38 patients and mild AI in five who had AVR. The mean peak systolic gradient was 16.2 +/- 7.6 mmHg for repair and 13.2 +/- 7.2 mmHg for AVR. Four patients who had valve repair and two who had AVR, needed repeat aortic valve surgery because of progressive AI or endocarditis. Freedom from reoperation at five years was 91 +/- 5% for repair and 94 +/- 6% for replacement (p = 0.2), while freedom from moderate or severe AI at five years was 79 +/- 8% for repair and 94 +/- 6% for replacement (p = 0.024). The peak systolic gradient at follow up was 11.7 +/- 6.8 mmHg after repair and 13.3 +/- 9.6 mmHg after AVR (p = 0.4). There were no thromboembolic complications in either group. CONCLUSION Repair of BAV is feasible in certain patients with AI, but the hemodynamics and clinical outcomes do not appear to be superior to AVR with biological valves during the first five years of follow up.
Effect of Flibanserin Treatment on Body Weight in Premenopausal and Postmenopausal Women with Hypoactive Sexual Desire Disorder: A Post Hoc Analysis

Abstract Background: Flibanserin, a 5-HT1A agonist and 5-HT2A antagonist, is indicated for the treatment of acquired, generalized hypoactive sexual desire disorder (HSDD) in premenopausal women. This post hoc analysis evaluated the effect of flibanserin treatment on body weight in premenopausal and postmenopausal women with HSDD. Materials and Methods: This analysis included three 24-week, double-blind, placebo-controlled studies of flibanserin 100 mg each bedtime (qhs) in premenopausal women, a similarly designed study in postmenopausal women, and a 52-week, open-label extension study in premenopausal women. Results: In a pooled analysis of premenopausal women, mean baseline body mass index (BMI) was 27.0 kg/m2 in the flibanserin group (n = 1227) and 26.8 kg/m2 in the placebo group (n = 1238). Among patients who completed 24 weeks of treatment, least squares (LS) mean weight change was −1.4 kg in the flibanserin group (n = 1010) and −0.1 kg in the placebo group (n = 1066; p < 0.0001). Weight loss ≥5% from baseline was reported in 21.0% of patients who received flibanserin and 7.8% of patients who received placebo; weight loss ≥10% was reported in 3.8% and 2.0% of patients, respectively. In postmenopausal women, mean baseline BMI was 27.7 kg/m2 in the flibanserin group (n = 467) and 27.3 kg/m2 in the placebo group (n = 480). LS mean weight change at week 24 was −1.8 kg in the flibanserin group (n = 385) and −0.1 kg in the placebo group (n = 425; p < 0.0001), with weight loss ≥5% reported in 24.7% and 7.3% of patients, respectively, and weight loss ≥10% reported in 5.2% and 1.7%, respectively. In HSDD patients with >12 months (n = 880) and >18 months (n = 637) of exposure to flibanserin, mean weight change was −1.0 and −1.2 kg, respectively; 25.4% and 26.9% of patients, respectively, experienced weight loss ≥5% from baseline, and 7.8% and 8.4%, respectively, experienced weight loss ≥10%. Conclusions: Women treated with flibanserin for HSDD may experience weight loss.
Quantitative control of the error bounds of a fast super-resolution technique for microscopy and astronomy

While the registration step is often problematic for superresolution, many microscopes and telescopes are now equipped with a piezoelectric mechanical system which permits to accurately control their motion (down to nanometers). Therefore one can use such devices to acquire multiple images of the same scene at various controlled positions. Then a fast super-resolution algorithm [1] can be used for efficient super-resolution. However the minimal use of r2 images for a resolution enhancement factor r is generally not sufficient to obtain good results. We propose to take several images at positions randomly distributed close to each reference position. We study the number of images necessary to control the error resulting from the super-resolution algorithm by [1] due to the uncertainty on positions. The main result is a lower bound on the number of images to respect a given error upper bound with probability higher than a desired confidence level.
A Social Media Based Index of Mental Well-Being in College Campuses

Psychological distress in the form of depression, anxiety and other mental health challenges among college students is a growing health concern. Dearth of accurate, continuous, and multi-campus data on mental well-being presents significant challenges to intervention and mitigation efforts in college campuses. We examine the potential of social media as a new "barometer" for quantifying the mental well-being of college populations. Utilizing student-contributed data in Reddit communities of over 100 universities, we first build and evaluate a transfer learning based classification approach that can detect mental health expressions with 97% accuracy. Thereafter, we propose a robust campus-specific Mental Well-being Index: MWI. We find that MWI is able to reveal meaningful temporal patterns of mental well-being in campuses, and to assess how their expressions relate to university attributes like size, academic prestige, and student demographics. We discuss the implications of our work for improving counselor efforts, and in the design of tools that can enable better assessment of the mental health climate of college campuses.
Molecular causes of aneuploidy in mammalian eggs

Mammalian oocytes are particularly error prone in segregating their chromosomes during their two meiotic divisions. This results in the creation of an embryo that has inherited the wrong number of chromosomes: it is aneuploid. The incidence of aneuploidy rises significantly with maternal age and so there is much interest in understanding this association and the underlying causes of aneuploidy. The spindle assembly checkpoint, a surveillance mechanism that operates in all cells to prevent chromosome mis-segregation, and the cohesive ties that hold those chromosomes together, have thus both been the subject of intensive investigation in oocytes. It is possible that a lowered sensitivity of the spindle assembly checkpoint to certain types of chromosome attachment error may endow oocytes with an innate susceptibility to aneuploidy, which is made worse by an age-related loss in the factors that hold the chromosomes together.
Aggregate Query Answering on Anonymized Tables

Privacy is a serious concern when microdata need to be released for ad hoc analyses. The privacy goals of existing privacy protection approaches (e.g., k-anonymity and l-diversity) are suitable only for categorical sensitive attributes. Since applying them directly to numerical sensitive attributes (e.g., salary) may result in undesirable information leakage, we propose privacy goals to better capture the need of privacy protection for numerical sensitive attributes. Complementing the desire for privacy is the need to support ad hoc aggregate analyses over microdata. Existing generalization-based anonymization approaches cannot answer aggregate queries with reasonable accuracy. We present a general framework of permutation-based anonymization to support accurate answering of aggregate queries and show that, for the same grouping, permutation-based techniques can always answer aggregate queries more accurately than generalization-based approaches. We further propose several criteria to optimize permutations for accurate answering of aggregate queries, and develop efficient algorithms for each criterion.
Primary-user mobility impact on spectrum sensing in Cognitive Radio networks

In this paper, the effects of the primary-user (PU) mobility on spectrum sensing in Cognitive Radio (CR) networks are studied. To this aim, first, the spectrum sensing problem is reformulated to account for the PU mobility. Then, the effects of the PU mobility are studied with the objective to determine the parameters that affect the spectrum sensing functionality. For this, two performance metrics are analytically derived: i) the detection capability, which measures the PU mobility impact on the CR user detection probability; ii) the mobility-enabled sensing capacity, a new metric that measures the expected transmission capacity achievable by a CR user in the presence of PU mobility. The mathematical analysis is carried out in different scenarios, by using mobility and spectrum occupancy models. The results show that the detection capability is affected by five parameters: the PU protection range, the network region size, the PU mobility model, the CR spatial distribution, and the number of PUs that use the same spectrum band. Moreover, it is shown that the sensing capacity can significantly increase in the presence of PU mobility if the PU protection range is smaller than the network region size. The mathematical results are derived by considering the dynamic PU traffic, and validated through simulations.
Antimicrobial therapy in periodontitis: the use of systemic antimicrobials against the subgingival biofilm.

OBJECTIVES The aim was to answer three relevant questions: can systemic antimicrobials be efficacious if the biofilm is not disrupted? Can the type of debridement of the subgingival biofilm impact upon the clinical outcomes of the adjunctive antimicrobial therapy? Is the efficacy of the adjunctive systemic antimicrobial therapy dependent on the quality of the debridement of the subgingival biofilm and the sequence debridement-antibiotic usage? MATERIAL AND METHODS Relevant papers were searched, critically analysed and their data were extracted. RESULTS For the first question, studies assessing susceptibility of bacteria in biofilms, and clinical studies evaluating systemic antimicrobials as monotherapy, were reviewed. For the second question, clinical studies comparing systemic antimicrobials as adjuncts to non-surgical debridement or to periodontal surgery and clinical trials using systemic antibiotics with periodontal surgery were evaluated. For the third question, a previous systematic review was updated. CONCLUSION If systemic antimicrobials are indicated in periodontal therapy, they should be adjunctive to mechanical debridement. There is not enough evidence to support their use with periodontal surgery. Indirect evidence suggests that antibiotic intake should start on the day of debridement completion, debridement should be completed within a short time (preferably <1 week) and with an adequate quality, to optimize the results.
Erythropoietin in Experimental Acute Renal Failure

The haematopoietic factor erythropoietin (EPO) has recently been recognized to play a physiological role in the brain and other tissues. The EPO receptor is present in the glomerulus, mesangial and tubular epithelial cells in the kidney. We have reviewed the experimental use of EPO in animal models of acute renal failure. EPO attenuates the dysfunction and histological changes associated with ischaemia-reperfusion injury, with a reduction in apoptotic cell death. EPO has also shown benefit in animal models of systemic shock and cisplatin-induced nephrotoxicity. In vitro studies have shown that EPO has direct effects on proliferation and cell death in proximal tubular epithelial cells. There is increasingly strong experimental evidence that EPO may be of therapeutic use in acute renal failure, and clinical trials should be undertaken to determine its clinical applications in this field.
The Potent BACE1 Inhibitor LY2886721 Elicits Robust Central Aβ Pharmacodynamic Responses in Mice, Dogs, and Humans

BACE1 is a key protease controlling the formation of amyloid β, a peptide hypothesized to play a significant role in the pathogenesis of Alzheimer's disease (AD). Therefore, the development of potent and selective inhibitors of BACE1 has been a focus of many drug discovery efforts in academia and industry. Herein, we report the nonclinical and early clinical development of LY2886721, a BACE1 active site inhibitor that reached phase 2 clinical trials in AD. LY2886721 has high selectivity against key off-target proteases, which efficiently translates in vitro activity into robust in vivo amyloid β lowering in nonclinical animal models. Similar potent and persistent amyloid β lowering was observed in plasma and lumbar CSF when single and multiple doses of LY2886721 were administered to healthy human subjects. Collectively, these data add support for BACE1 inhibition as an effective means of amyloid lowering and as an attractive target for potential disease modification therapy in AD.