Miracle-dz/UniFAR-FTUs huggingface dataset:
Sirtuin 3, a New Target of PGC-1α, Plays an Important Role in the Suppression of ROS and Mitochondrial Biogenesis

Background Sirtuin 3 (SIRT3) is one of the seven mammalian sirtuins, which are homologs of the yeast Sir2 gene. SIRT3 is the only sirtuin with a reported association with the human life span. Peroxisome proliferator-activated receptor γ coactivator-1α (PGC-1α) plays important roles in adaptive thermogenesis, gluconeogenesis, mitochondrial biogenesis and respiration. PGC-1α induces several key reactive oxygen species (ROS)-detoxifying enzymes, but the molecular mechanism underlying this is not well understood. Results Here we show that PGC-1α strongly stimulated mouse Sirt3 gene expression in muscle cells and hepatocytes. Knockdown of PGC-1α led to decreased Sirt3 gene expression. PGC-1α activated the mouse SIRT3 promoter, which was mediated by an estrogen-related receptor (ERR) binding element (ERRE) (−407/−399) mapped to the promoter region. Chromatin immunoprecipitation and electrophoretic mobility shift assays confirmed that ERRα bound to the identified ERRE and PGC-1α co-localized with ERRα in the mSirt3 promoter. Knockdown of ERRα reduced the induction of Sirt3 by PGC-1α in C2C12 myotubes. Furthermore, Sirt3 was essential for PGC-1α-dependent induction of ROS-detoxifying enzymes and several components of the respiratory chain, including glutathione peroxidase-1, superoxide dismutase 2, ATP synthase 5c, and cytochrome c. Overexpression of SIRT3 or PGC-1α in C2C12 myotubes decreased basal ROS level. In contrast, knockdown of mSIRT3 increased basal ROS level and blocked the inhibitory effect of PGC-1α on cellular ROS production. Finally, SIRT3 stimulated mitochondrial biogenesis, and SIRT3 knockdown decreased the stimulatory effect of PGC-1α on mitochondrial biogenesis in C2C12 myotubes. Conclusion Our results indicate that Sirt3 functions as a downstream target gene of PGC-1α and mediates the PGC-1α effects on cellular ROS production and mitochondrial biogenesis. Thus, SIRT3 integrates cellular energy metabolism and ROS generation. The elucidation of the molecular mechanisms of SIRT3 regulation and its physiological functions may provide a novel target for treating ROS-related disease.
Bariatric Surgery in the United Kingdom: A Cohort Study of Weight Loss and Clinical Outcomes in Routine Clinical Care

Background Bariatric surgery is becoming a more widespread treatment for obesity. Comprehensive evidence of the long-term effects of contemporary surgery on a broad range of clinical outcomes in large populations treated in routine clinical practice is lacking. The objective of this study was to measure the association between bariatric surgery, weight, body mass index, and obesity-related co-morbidities. Methods and Findings This was an observational retrospective cohort study using data from the United Kingdom Clinical Practice Research Datalink. All 3,882 patients registered in the database and with bariatric surgery on or before 31 December 2014 were included and matched by propensity score to 3,882 obese patients without surgery. The main outcome measures were change in weight and body mass index over 4 y; incident diagnoses of type 2 diabetes mellitus (T2DM), hypertension, angina, myocardial infarction (MI), stroke, fractures, obstructive sleep apnoea, and cancer; mortality; and resolution of hypertension and T2DM. Weight measures were available for 3,847 patients between 1 and 4 mo, 2,884 patients between 5 and 12 mo, and 2,258 patients between 13 and 48 mo post-procedure. Bariatric surgery patients exhibited rapid weight loss for the first four postoperative months, at a rate of 4.98 kg/mo (95% CI 4.88–5.08). Slower weight loss was sustained to the end of 4 y. Gastric bypass (6.56 kg/mo) and sleeve gastrectomy (6.29 kg/mo) were associated with greater initial weight reduction than gastric banding (2.77 kg/mo). Protective hazard ratios (HRs) were detected for bariatric surgery for incident T2DM, 0.68 (95% CI 0.55–0.83); hypertension, 0.35 (95% CI 0.27–0.45); angina, 0.59 (95% CI 0.40–0.87);MI, 0.28 (95% CI 0.10–0.74); and obstructive sleep apnoea, 0.55 (95% CI 0.40–0.87). Strong associations were found between bariatric surgery and the resolution of T2DM, with a HR of 9.29 (95% CI 6.84–12.62), and between bariatric surgery and the resolution of hypertension, with a HR of 5.64 (95% CI 2.65–11.99). No association was detected between bariatric surgery and fractures, cancer, or stroke. Effect estimates for mortality found no protective association with bariatric surgery overall, with a HR of 0.97 (95% CI 0.66–1.43). The data used were recorded for the management of patients in primary care and may be subject to inaccuracy, which would tend to lead to underestimates of true relative effect sizes. Conclusions Bariatric surgery as delivered in the UK healthcare system is associated with dramatic weight loss, sustained at least 4 y after surgery. This weight loss is accompanied by substantial improvements in pre-existing T2DM and hypertension, as well as a reduced risk of incident T2DM, hypertension, angina, MI, and obstructive sleep apnoea. Widening the availability of bariatric surgery could lead to substantial health benefits for many people who are morbidly obese.
Mismatch Negativity Recording in Children With Duchenne Muscular Dystrophy

Many studies on Duchenne muscular dystrophy children support the hypothesis of a specific neuropsychological phenotype affecting mostly phonological skills. This prospective study aimed to shed light on the role of phonological abilities. Fourteen Duchenne muscular dystrophy children and 7 healthy children underwent mismatch negativity. Moreover, verbal intelligence, visuospatial attention, immediate verbal memory, working memory, grammar, vocabulary, visuomotor skills, reading, text comprehension, writing, and arithmetic were tested in Duchenne muscular dystrophy children. No significant difference between control and Duchenne muscular dystrophy children was found neither for mismatch negativity amplitude (P = .191 and .116, respectively) nor for latency (P = .135). Eight (57.14%) patients showed an impairment of immediate verbal memory and of visuomotor skills, 7 (63.64%) patients had a deficit in writing and arithmetic skills, even with a mean normal intelligence quotient. Taken together, the results put in evidence a heterogeneous neuropsychological profile not explainable on the basis of a phonological deficit.
Excessive daytime sleepiness in the elderly: association with cardiovascular risk, obesity and depression.

OBJECTIVE To observe the relationship between Excessive Daytime Sleepiness (EDS) and the presence of risk factors for cardiovascular dysfunction, depression and obesity in the elderly. METHODS We interviewed 168 elderly from the community of Campina Grande, Paraíba. They were selected according to health districts in the period of 2010. We used the Epworth Sleepiness Scale to diagnose excessive daytime sleepiness (> 10 points); waist circumference for the risk of cardiovascular dysfunction (> 94 or > 80 cm); Geriatric Depression Scale for depression (>10 points) and body mass index for obesity (> 25 kg/m2). Association analysis was performed by the Chi-square test adjusted for sex and age group, adopting α < 0.05. RESULTS One hundred and sixty eight elderly individuals with mean age of 72.34 ± 7.8 years old participated in this study, being 122 (72.6%) women. EDS was identified in 53 (31.5%) of them; depression, in 72 (42.9%); overweight/obesity, in 95 (64.46%); and risk of cardiovascular dysfunction, in 129 (79.6%). Depressed men (78.6%, p = 0.0005) and risk of cardiovascular dysfunction (57.1%, p = 0.02) were more prone to EDS. In women, only obesity was related to sleepiness (42.1%, p = 0.01). Only those aged between 70 - 79 years old showed association between sleepiness and obesity. CONCLUSION It was found that obesity for women, and depression and cardiovascular dysfunction risking for men were associated with EDS in the elderly. The variable sex is a confusion condition for the association with sleepiness.
Immunogenicity of a Monovalent 2009 Influenza A ( H 1 N 1 ) Vaccine in Infants and Children

THE DISEASE BURDEN OF SEAsonal influenza in the pediatric population is generally attributed to a combination of immunologic naivety, prolonged virus shedding, and enhanced transmission opportunity in child-care and educational institutions. Consistent with this experience, initial reports of the introduction and indigenous transmission of 2009 influenza A(H1N1) infection in many countries have largely involved children, often attending day or boarding schools. Serosurveys have demonstrated little or no cross-reactivity of the pediatric sera sample to the new virus strain, underContext In the ongoing influenza pandemic, a safe and effective vaccine against 2009 influenza A(H1N1) is needed for infants and children.
Load flow method for radial distribution systems with distributed generation using a dynamic data matrix

This paper proposes an algorithm to build a dynamic data matrix (DDM) that allows organizing the topology information of a radial distribution system (RDS). The DDM is then used in load flow analysis of RDSs with and without distributed generation (DG). The deterministic equations of the load flow method and the iterative loop to find the bus voltage magnitude and phase angle solutions of an RDS are presented. The load flow method is valid for RDSs with or without DGs, and it is flexible for RDS reconfiguration. A computational program was developed in MATLAB to build the DDM and run the load flow for RDSs of n buses. Finally, the load flow program performance is analyzed with two radial distribution systems of 33 and 119 buses. The results show that the DDM's algorithm and the load flow method are computationally efficient and that the load flow program converges in a short number of iterations.
A Multiscale pipeline for the search of string-induced CMB anisotropies

We propose a multi-scale edge-detection algorithm to search for the Gott-Kaiser-Stebbins imprints of a cosmic string (CS) network on the Cosmic Microwave Background (CMB) anisotropies. Curvelet decomposition and extended Canny algorithm are used to enhance the string detectability. Various statistical tools are then applied to quantify the deviation of CMB maps having a cosmic string contribution with respect to pure Gaussian anisotropies of inflationary origin. These statistical measures include the one-point probability density function, the weighted two-point correlation function (TPCF) of the anisotropies, the unweighted TPCF of the peaks and of the up-crossing map, as well as their cross-correlation. We use this algorithm on a hundred of simulated Nambu-Goto CMB flat sky maps, covering approximately $10\%$ of the sky, and for different string tensions $G\mu$. On noiseless sky maps with an angular resolution of $0.9'$, we show that our pipeline detects CSs with $G\mu$ as low as $G\mu\gtrsim 4.3\times 10^{-10}$. At the same resolution, but with a noise level typical to a CMB-S4 phase II experiment, the detection threshold would be to $G\mu\gtrsim 1.2 \times 10^{-7}$.
Human Error in P300 Speller Paradigm for Brain-Computer Interface

A brain-computer interface (BCI) is a system that conveys messages and commands directly from the human brain to a computer. The BCI system described in this work is based on P300 speller BCI paradigm designed by Farwell and Donchin in 1988. It has been the most widely used and a benchmark in P300 BCI. In this paradigm, a 6x6 matrix of letters and numbers is displayed and subject focuses on a character while different rows and columns flash. The work presented in this paper is an attempt to improve the accuracy of P300 BCI systems by understanding a source of error in this paradigm. It is shown that adjacent rows and columns to the target ones play major role in the error. This can be attributed to human error that when the adjacent row or column to the target one flashes, it attracts subject's attention and creates the P300.
A Congestion Mechanism for Uphill Expressways, Part I: the Shoulder Lane "Release Valve"

A mechanism is unveiled by which congestion forms and persists near the base of an uphill expressway segment, causing significant reductions in output flow. The traffic condition in the expressway's shoulder lane is key to the mechanism. When shoulder-lane flow was low, drivers maneuvered around speed disturbances that periodically arose in the median lane. The shoulder lane accommodated high rates of vehicle migrations, thus acting as a "release valve" for the excess accumulation created by the speed disturbances. The release valve failed only when demand increased later in the rush. The resulting higher flows in the shoulder lane impeded drivers' attempts to maneuver around the median-lane speed disturbances that occurred thereafter. These attempts disrupted traffic and spread the excess accumulation laterally across all lanes. When this queue filled the approach to the hill, vehicles arrived to its base at low speeds. This impeded vehicle ascent; output flow dropped by about 10%; and this state of affairs persisted for the remainder of the rush. The more conspicuous details of this mechanism were observed in loop detector data measured over many days at the site, and are consistent with observations previously made at other sites. The more subtle details became visible by examining thousands of vehicle trajectories extracted from a series of eleven roadside video cameras. Many of the subtleties are compatible with an existing theory of multi-lane traffic. All of this suggests that the present findings can be generalized to other uphill expressway segments. Practical implications are discussed.
The phylogenetics of mycotoxin and sclerotium production in Aspergillus flavus and Aspergillus oryzae.

Aspergillus flavus is a common filamentous fungus that produces aflatoxins and presents a major threat to agriculture and human health. Previous phylogenetic studies of A. flavus have shown that it consists of two subgroups, called groups I and II, and morphological studies indicated that it consists of two morphological groups based on sclerotium size, called "S" and "L. " The industrially important non-aflatoxin-producing fungus A. oryzae is nested within group I. Three different gene regions, including part of a gene involved in aflatoxin biosynthesis (omt12), were sequenced in 33 S and L strains of A. flavus collected from various regions around the world, along with three isolates of A. oryzae and two isolates of A. parasiticus that were used as outgroups. The production of B and G aflatoxins and cyclopiazonic acid was analyzed in the A. flavus isolates, and each isolate was identified as "S" or "L" based on sclerotium size. Phylogenetic analysis of all three genes confirmed the inference that group I and group II represent a deep divergence within A. flavus. Most group I strains produced B aflatoxins to some degree, and none produced G aflatoxins. Four of six group II strains produced both B and G aflatoxins. All group II isolates were of the "S" sclerotium phenotype, whereas group I strains consisted of both "S" and "L" isolates. Based on the omt12 gene region, phylogenetic structure in sclerotium phenotype and aflatoxin production was evident within group I. Some non-aflatoxin-producing isolates of group I had an omt12 allele that was identical to that found in isolates of A. oryzae.
Enhanced Photovoltaic Performance of FASnI3-Based Perovskite Solar Cells with Hydrazinium Chloride Coadditive

For the fabrication of efficient Sn-based perovskite solar cells (PSCs), deposition of uniform and pinhole-free perovskite films with low Sn4+ content remains a crucial factor. In this work, we present a coadditive engineering process by introduction of hydrazinium chloride (N2H5Cl) in a single precursor solvent system to fabricate FASnI3 perovskite films. The successful integration of N2H5Cl results in reduced concentration of Sn4+ content by 20% in the FASnI3 film leading to suppressed carrier recombination and pinhole-free uniform coverage. These remarkable improvements in the FASnI3 film results in power conversion efficiency (PCE) of Sn-based PSC up to 5.4% due to a significant increase in open-circuit voltage. Moreover, the best PSC without encapsulation showed stable shelf life up to 1000 h while retaining 65% of its initial PCE.
Ferrisiderophore reductase activity associated with an aromatic biosynthetic enzyme complex in Bacillus subtilis

The cytoplasmic fractions obtained from Bacillus subtilis strains W168 and WB2802 catalyzed reductive release of iron from the ferric chelate of 2,3-dihydroxybenzoic acid (ferri-DHB), the ferrisiderophore produced by B. subtilis. Ferrisiderophore reductase activity may insert iron into metabolism. This activity required a reductant (reduced nicotinamide adenine dinucleotide phosphate was preferred), was oxygen sensitive, and was stimulated by flavin mononucleotide plus certain divalent cations. The cytoplasmic fractions also reduced 2,6-dichlorophenolindophenol; this reaction was stimulated by flavin mononucleotide plus a divalent cation. Ferri-DHB and 2,6-dichlorophenolindophenol reductase activities were copurified by phosphocellulose and diethylaminoethyl-cellulose chromatography. Nondenaturing polyacrylamide gel electrophoresis of the purified material revealed that both ferri-DHB and 2,6-dichlorophenolindophenol reductase activities were located in a protein band at Rf 0.75. The chromatographic procedures purified a reductase known to be associated with two aromatic biosynthetic enzymes, chorismate synthase and dehydroquinate synthase. Therefore, a portion of the ferrisiderophore reductase activity in B. subtilis may be catalyzed by a reductase that also is essential for aromatic biosynthesis.
Gender-Specific Impacts of Apnea, Age, and BMI on Parasympathetic Nerve Dysfunction during Sleep in Patients with Obstructive Sleep Apnea

Background The gender-specific influences of various confounding factors, including apnea, age, BMI, and cigarette consumption, on the function of the parasympathetic nerve system (PNS) during sleep in OSA patients has never been investigated. Methods One hundred ninety-seven males and 63 females with OSA were subjected to full PSG examinations including assessment of R-R intervals (RRIs) during an overnight ECG. The PNS-derived modulatory effect on the RRIs and the variability of this effect were quantified during REM and NREM using instantaneous time-frequency analysis with complex demodulation. The spectral domain with the maximum instantaneous amplitude in the high-frequency band between 0.15 and 0.4 Hz was defined as the main HF peak and used as a surrogate marker of PNS discharge. Based on density-spectrum-array maps of the main HF peaks (HF-DSA map), shifts in the central frequency of the main HF peak over time were continuously observed. When the main HF peaks on the HF-DSA maps maintained the same central frequency for more than 20 sec or 5 min, the PNS functions were considered to be “stable” or “very stable”, respectively. Results Apneas enhanced PNS-derived cardiac-modulation during REM in males, but more importantly, they made PNS-function unstable during both REM and NREM in males and during NREM in females. Aging blunted the PNS-derived cardiac-modulation during both REM and NREM regardless of gender, but aging had no impact on the stability of PNS-function. BMI blunted PNS-eliciting cardiac-modulation during REM in males and during NREM in both males and females. BMI made the PNS unstable during REM in females. Neither height nor cigarette consumption influenced any PNS-related parameter. Conclusions The PNS-derived cardiac-modulation was generally inhibited by aging and obesity, in which the effect of obesity was gender-specific. The PNS instability at nighttime was mainly induced by apneas but by obesity particularly during REM in females.
Extraintestinal migration of Pharyngostomum cordatum metacercariae in experimental rodents

Extraintestinal migration patterns of Pharyngostomum cordatum (Digenea: Neodiplostomidae) were studied in experimental rodents such as mice, rats, and hamsters. When metacercariae isolated from grass snakes were infected orally to rodents, they penetrated the intestinal wall at days 2–3 post-infection (p.i.) and were discovered mainly in the diaphragm, intercostal muscles, and vital organ such as the lungs at days 7–28 p.i. , without morphological changes. Interestingly, from several rodents which died suddenly at days 2–9 p.i. , small to considerable numbers of metacercariae were found, not only in the lungs, but also in the heart and brain. Within the tissues, worms were freely motile until day 7 p.i. , but later they were surrounded by host cells, and finally tissue cysts were formed. When metacercariae harvested from the snakes and intercostal muscles of rodents were infected orally to cats, they developed into adult flukes in the small intestine. The results show that P. cordatum undergoes considerable extraintestinal migration including the vital organs of its rodent hosts.
Selenomethionine Stimulates MAPK (ERK) Phosphorylation, Protein Oxidation, and DNA Synthesis in Gastric Cancer Cells

Abstract: Selenium is an essential trace element and is required for the synthesis of cellular enzymes that protect against oxidative stress. Epidemiological findings indicate that low selenium intake is associated with increased cancer risk, and, although the majority of studies show that exposure of transformed cells to selenium results in apoptotic cell death, there are reports indicating that cells exposure to low selenium concentrations promotes cellular proliferation. Gastric adenocarcinoma SNU-1 cells responded to selenomethionine with a biphasic proliferative curve: enhanced incorporation of 3H-thymidine into DNA within a very narrow range of selenomethionine concentrations followed by decreased 3H-thymidine uptake at higher levels. Concentrations of selenomethionine that stimulate cellular proliferation also induce cellular oxidation and phosphorylation of MAPK (ERK), a component of cell signaling cascades. MAPK (ERK) phosphorylation is synonymous with MAPK activation and enhanced cell growth. Our findings support previous observations of enhanced proliferation in response to low levels of selenium and suggest that, at certain concentrations, selenomethionine induces mild oxidative stress that, in turn, stimulates DNA synthesis.
Ni–Cr–Al Alloy for neutron scattering at high pressures

ABSTRACT High-pressure devices used in neutron scattering require materials with high strength, low neutron attenuation, and no activation. They should also be non-magnetic. Only very few materials fulfil these criteria. Here, it is reported on the manufacture and properties of the Ni–Cr–Al alloy (57.0 wt-% Ni, 40.0 wt-% Cr, and 3.0 wt-% Al). The casting and heat treatment to obtain the material with the optimal yield strength are described in detail. Synchrotron powder diffraction reveals that phases of the Ni2Cr, Cr, and Ni3Al types are present. Aging has no significant effect on their lattice parameters and volume fractions. The alloy has no magnetic order down to at least 1.9 K as evidenced by magnetic measurements and diffraction with polarised neutrons. This paper is part of a Thematic Issue on The Crystallographic Aspects of Metallic Alloys.