Miracle-dz/UniFAR-FTUs huggingface dataset:
Investigation of Wood Impact Properties Using Fractal Dimension Analysis

Fractal analysis is a research tool recently used to model various processes. However, this analysis has not been used for determining impact properties of wood. In this study, the transverse and longitudinal impact ductility of five species, ie white pine, poplar, pine, birch, and basswood, was experimentally determined. Based on the grid-cover method, photographs were taken of the fracture surfaces and edited by image graying using Photoshop CS5 (Adobe Systems Inc.). The yardstick δ was determined by adjusting the distance between the grid lines. The slope K of the regression equation of Log(1/δ i ) vs Log( N [δ i ]) was the fractal dimension D L of the fracture profile curve. Fractal dimension allows us to measure the complexity of fracture profiles after the specimens were broken by impacts. The results indicate that the average fractal dimension values were 2.023-2.075 on the fractures from transverse and longitudinal impacts. The longitudinal impact ductility was greater than the transverse for all tested species. The transverse and longitudinal impact ductility was linearly related to the fracture fractal dimension.
Communication Performance of Java-Based Parallel Virtual Machines

Message-passing libraries such as the Parallel Virtual Machine (PVM) and Message Passing Interface (MPI) provide a common Application Programming Interface (API) to implement parallel programs across multiple computers. Such libraries provide a means to program a collection of normally independent computers to work co-operatively on a single computation. However, for programs written in C and Fortran these collections of machines may provide a heterogenous set of computer architectures, requiring a different executable for each type of architecture. The Java language offers a potentially machine-independent method of distributing the same code to perform the computations on different computer architectures. The communication performance between processors running Java programs is a crucial issue for this type of application. This paper compares the performance between tradition PVM implemented in C code, Java code interfaced to the traditional PVM libraries (JavaPVM), and Java code that performs functions equivalent to the traditional PVM library (JPVM). The Java implementations are slower, but performance improvements are possible. © 1998 John Wiley & Sons, Ltd.
Channel Impulse Response Tap Prediction for Time-Varying Wireless Channels

In this paper, we perform a comparative study of both the achievable performance and the associated computational complexity of two major time-domain prediction strategies proposed for employment in wireless mobile communication systems. Specifically, we investigate the intrinsic design tradeoffs of the so-called stationary robust predictor and the adaptive recursive-least-squares (RLS) predictor. We demonstrate that the RLS predictor outperforms its robust counterpart at a cost of slightly higher computational complexity, and hence, the RLS predictor constitutes a better alternative for employment in wireless transceivers.
Android Fat Depot Is More Closely Associated with Metabolic Syndrome than Abdominal Visceral Fat in Elderly People

Background Fat accumulation in android compartments may confer increased metabolic risk. The incremental utility of measuring regional fat deposition in association with metabolic syndrome (MS) has not been well described particularly in an elderly population. Methods and Findings As part of the Korean Longitudinal Study on Health and Aging, which is a community-based cohort study of people aged more than 65 years, subjects (287 male, 75.9±8.6 years and 278 female, 76.0±8.8 years) with regional body composition data using Dual energy X-ray absorptiometry for android/gynoid area, computed tomography for visceral/subcutaneous adipose tissue (VAT/SAT), and cardiometabolic markers including adiponectin and high-sensitivity CRP were enrolled. We investigated the relationship between regional body composition and MS in multivariate regression models. Mean VAT and SAT area was 131.4±65.5 cm2 and 126.9±55.2 cm2 in men (P = 0.045) and 120.0±46.7 cm2 and 211.8±65.9 cm2 in women (P<0.01). Mean android and gynoid fat amount was 1.8±0.8 kg and 2.5±0.8 kg in men and 2.0±0.6 kg and 3.3±0.8 kg in women, respectively (both P<0.01). VAT area and android fat amount was strongly correlated with most metabolic risk factors compared to SAT or gynoid fat. Furthermore, android fat amount was significantly associated with clustering of MS components after adjustment for multiple parameters including age, gender, adiponectin, hsCRP, a surrogate marker of insulin resistance, whole body fat mass and VAT area. Conclusions Our findings are consistent with the hypothesized role of android fat as a pathogenic fat depot in the MS. Measurement of android fat may provide a more complete understanding of metabolic risk associated with variations in fat distribution.
A New In Vitro Model of Breast Cancer Metastasis to Bone

Abstract : Breast cancer frequently metastasizes to the bone where it disrupts the balance between osteoblasts and osteoclasts and leads to osteolytic degradation. The objective of this study was to test the hypothesis that osteolytic bone metastases results partly from the effect of the cancer cells on the osteoblasts, i.e., the cancer cells prevent osteoblasts from accreting mineralized tissue, ultimately leading to accelerated skeletal degradation. To test this idea, we proposed to develop an existing three-dimensional culture system into an in vitro test system for studying the interactions between osteoblasts and metastatic breast cancer cells. The objectives were to characterize the morphology and physiology of osteoblasts (MC3T3-E1) cultured as a 3D osteoid in a bioreactor and determine how they reacted to the presence of human metastatic breast cancer cells (MDA-MB-231). In addition, we proposed to determine how this interaction was affected by changing the oxidative state of the microenvironment with selenium supplementation. We also used this system to determine how the currently used drugs, zoledronic acid and doxetaxel, affected osteoblasts and cancer cells in the 3D model. Osteoblasts (OB) grew into bone-like tissue in a 3D model system. Pre-OB matured to OB and eventually to osteocyte-like cells. These cells met the criteria of osteocytes based on shape and protein expression. In addition, the density was similar to that reported for calvaria bone. The 3-D system was used to examine the interaction of metastatic breast cancer cells, MDA-MB-231, with OB. The cancer cells brought about profound effects on the osteoid tissue. The OB changed from cuboidal to spindle shape. The cancer cells aligned into an Indian filing pattern, and penetrated the osteoid. Using RT-PCR, we found that cancer cells downregulated OB differentiation proteins but increased inflammatory cytokines.
Exploring Trade-Offs between Fisheries and Conservation of the Vaquita Porpoise (Phocoena sinus) Using an Atlantis Ecosystem Model

Background Minimizing fishery bycatch threats might involve trade-offs between maintaining viable populations and economic benefits. Understanding these trade-offs can help managers reconcile conflicting goals. An example is a set of bycatch reduction measures for the Critically Endangered vaquita porpoise (Phocoena sinus), in the Northern Gulf of California, Mexico. The vaquita is an endemic species threatened with extinction by artisanal net bycatch within its limited range; in this area fisheries are the chief source of economic productivity. Methodology/Principal Findings We analyze trade-offs between conservation of the vaquita and fisheries, using an end-to-end Atlantis ecosystem model for the Northern Gulf of California. Atlantis is a spatially-explicit model intended as a strategic tool to test alternative management strategies. We simulated increasingly restrictive fisheries regulations contained in the vaquita conservation plan: implementing progressively larger spatial management areas that exclude gillnets, shrimp driftnets and introduce a fishing gear that has no vaquita bycatch. We found that only the most extensive spatial management scenarios recovered the vaquita population above the threshold necessary to downlist the species from Critically Endangered. The scenario that excludes existing net gear from the 2008 area of vaquita distribution led to moderate decrease in net present value (US$ 42 million) relative to the best-performing scenario and a two-fold increase in the abundance of adult vaquita over the course of 30 years. Conclusions/Significance Extended spatial management resulted in the highest recovery of the vaquita population. The economic cost of proposed management actions was unequally divided between fishing fleets; the loss of value from finfish gillnet fisheries was never recovered. Our analysis shows that managers will have to confront difficult trade-offs between management scenarios for vaquita conservation.
Bronchopulmonary Disposition of Intravenous Voriconazole and Anidulafungin Given in Combination to Healthy Adults

ABSTRACT Voriconazole and anidulafungin in combination are being investigated for use for the treatment of pulmonary aspergillosis. We determined the pulmonary disposition of these agents. Twenty healthy participants received intravenous voriconazole (at 6 mg/kg of body weight every 12 h [q12h] on day 1 and then at 4 mg/kg q12h) and anidulafungin (200 mg on day 1 and then 100 mg every 24 h) for 3 days. Five participants each were randomized for collection of bronchoalveolar lavage samples at times of 4, 8, 12, and 24 h. Drug penetration was determined by the ratio of the total drug area under the concentration-time curve during the dosing interval (AUC0-τ) for epithelial lining fluid (ELF) and alveolar macrophages (AM) to the total drug AUC0-τ in plasma. The mean (standard deviation) half-life and AUC0-τ were 6.9 (2.1) h and 39.5 (19.8) μg·h/ml, respectively, for voriconazole and 20.8 (3.1) h and 101 (21.8) μg·h/ml, respectively, for anidulafungin. The AUC0-τ values for ELF and AM were 282 and 178 μg·h/ml, respectively, for voriconazole, and 21.9 and 1,430 μg·h/ml, respectively, for anidulafungin. This resulted in penetration ratios into ELF and AM of 7.1 and 4.5, respectively, for voriconazole and 0.22 and 14.2, respectively, for anidulafungin. The mean total concentrations of both drugs in ELF and AM at 4, 8, 12, and 24 h remained above the MIC90/90% minimum effective concentration for most Aspergillus species. In healthy adult volunteers, voriconazole achieved high levels of exposure in both ELF and AM, while anidulafungin predominantly concentrated in AM.
Breastfeeding and Later Cognitive and Academic Outcomes

Objective. This study examines the associations between duration of breastfeeding and childhood cognitive ability and academic achievement over the period from 8 to 18 years using data collected during the course of an 18-year longitudinal study of a birth cohort of >1000 New Zealand children. Method. During the period from birth to age 1 year, information was collected on maternal breastfeeding practices. Over the period from 8 to 18 years, sample members were assessed on a range of measures of cognitive and academic outcomes including measures of child intelligence quotient; teacher ratings of school performance; standardized tests of reading comprehension, mathematics, and scholastic ability; pass rates in school leaving examinations; and leaving school without qualifications. Results. Increasing duration of breastfeeding was associated with consistent and statistically significant increases in 1) intelligence quotient assessed at ages 8 and 9 years; 2) reading comprehension, mathematical ability, and scholastic ability assessed during the period from 10 to 13 years; 3) teacher ratings of reading and mathematics assessed at 8 and 12 years; and 4) higher levels of attainment in school leaving examinations. Children who were breastfed for ≥8 months had mean test scores that were between 0.35 and 0.59 SD units higher than children who were bottle-fed. Mothers who elected to breastfeed tended to be older; better educated; from upper socioeconomic status families; were in a two-parent family; did not smoke during pregnancy; and experienced above average income and living standards. Additionally, rates of breastfeeding increased with increasing birth weight, and first-born children were more likely to be breastfed. Regression adjustment for maternal and other factors associated with breastfeeding reduced the associations between breastfeeding and cognitive or educational outcomes. Nonetheless, in 10 of the 12 models, fitted duration of breastfeeding remained a significant predictor of later cognitive or educational outcomes. After adjustment for confounding factors, children who were breastfed for ≥8 months had mean test scores that were between 0.11 and 0.30 SD units higher than those not breastfed. Conclusions. It is concluded that breastfeeding is associated with small but detectable increases in child cognitive ability and educational achievement. These effects are 1) pervasive, being reflected in a range of measures including standardized tests, teacher ratings, and academic outcomes in high school; and 2) relatively long-lived, extending throughout childhood into young adulthood.
Feeding Behavior of Subadult Sixgill Sharks (Hexanchus griseus) at a Bait Station

This is the first in-situ study of feeding behaviors exhibited by bluntnose sixgill sharks. Bait was placed beneath the Seattle Aquarium pier situated on the waterfront in Elliott Bay, Puget Sound, Washington at 20m of water depth. Cameras and lights were placed around the bait box to record sixgill shark presence and behavior while feeding. Analysis of feeding behavior revealed that sixgills utilize a bite comparable to many other elasmobranchs and aquatic vertebrates, have the ability to protrude their upper jaw, change their feeding behavior based on the situation, and employ sawing and lateral tearing during manipulation. The versatility of their feeding mechanism and the ability of sixgills to change their capture and food manipulation behaviors may have contributed to the species’ worldwide distribution and evolutionary success.
Quantitative assessment of nonsolid pulmonary nodule volume with computed tomography in a phantom study.

Background To assess the volumetric measurement of small (≤1 cm) nonsolid nodules with computed tomography (CT), focusing on the interaction of state of the art iterative reconstruction (IR) methods and dose with nodule densities, sizes, and shapes. Methods Twelve synthetic nodules [5 and 10 mm in diameter, densities of -800, -630 and -10 Hounsfield units (HU), spherical and spiculated shapes] were scanned within an anthropomorphic phantom. Dose [computed tomography scan dose index (CTDIvol)] ranged from standard (4.1 mGy) to below screening levels (0.3 mGy). Data was reconstructed using filtered back-projection and two state-of-the-art IR methods (adaptive and model-based). Measurements were extracted with a previously validated matched filter-based estimator. Analysis of accuracy and precision was based on evaluation of percent bias (PB) and the repeatability coefficient (RC) respectively. Results Density had the most important effect on measurement error followed by the interaction of density with nodule size. The nonsolid -630 HU nodules had high accuracy and precision at levels comparable to solid (-10 HU) nonsolid, regardless of reconstruction method and with CTDIvol as low as 0.6 mGy. PB was <5% and <11% for the 10- and 5-mm in nominal diameter -630 HU nodules respectively, and RC was <5% and <12% for the same nodules. For nonsolid -800 HU nodules, PB increased to <11% and <30% for the 10- and 5-mm nodules respectively, whereas RC increased slightly overall but varied widely across dose and reconstruction algorithms for the 5-mm nodules. Model-based IR improved measurement accuracy for the 5-mm, low-density (-800, -630 HU) nodules. For other nodules the effect of reconstruction method was small. Dose did not affect volumetric accuracy and only affected slightly the precision of 5-mm nonsolid nodules. Conclusions Reasonable values of both accuracy and precision were achieved for volumetric measurements of all 10-mm nonsolid nodules, and for the 5-mm nodules with -630 HU or higher density, when derived from scans acquired with below screening dose levels as low as 0.6 mGy and regardless of reconstruction algorithm.
Muscarinic acetylcholine receptor antagonists inhibit chick scleral chondrocytes.

PURPOSE Muscarinic acetylcholine receptors (mAChRs) have been implicated in the control of myopia in humans and in animal models. This study was conducted to determine whether mAChRs influence the growth of the chick sclera and, if so, which mAChR subtypes are involved. METHODS Sclera and scleral chondrocytes from normal and form-deprived eyes of 10- to 14-day-old chicks were treated with a total of seven ligands: two agonists, carbachol (nonselective) and McN-A-343 (selective for the M1 mAChR subtype); and five antagonists, atropine (nonselective), pirenzepine and telenzepine (M1), gallamine (M2), and 4-diphenylacetoxy-N-methylpiperidine methiodide (4-DAMP; M1 and M3). Incorporation of sulfate into glycosaminoglycans and of thymidine into DNA were quantified and normalized to sample DNA content. Possible toxicity of ligands at high doses was examined by analysis of cell number (by cell counting), viability (by trypan blue exclusion), and cellular metabolic activity (by dehydrogenase activity). RESULTS Cellular proliferation and extracellular matrix production were inhibited by atropine in whole sclera and in its cartilaginous layer. Sulfate incorporation by chondrocytes from normal and form-deprived eyes was inhibited by mAChR antagonists with a rank order of potency (atropine > pirenzepine = 4-DAMP >> gallamine) consistent with regulation by M1, rather than M3 or M2 mAChR subtypes. Pirenzepine inhibited sulfate incorporation by chondrocytes from form-deprived eyes more effectively than those from normal eyes. Chondrocyte cultures were not viable when grown in high doses of any of the ligands used except gallamine. CONCLUSIONS In chick scleral chondrocytes, synthesis of DNA and glycosaminoglycans was inhibited by mAChR antagonists. This inhibition was probably mediated by the M1 subtype mAChR. Therefore in vivo the sclera may be a site of action for the mAChR antagonists previously used to influence myopia. Although at high concentrations mAChR antagonists tested seemed to be toxic to chondrocytes, at lower doses inhibition occurred without toxic effects.
Memory dependence prediction

As the existing techniques that empower the modern high-performance processors are being refined and as the underlying technology trade-offs change, new bottlenecks are exposed and new challenges are raised. This thesis introduces a new tool, Memory Dependence Prediction that can be useful in combating these bottlenecks and meeting the new challenges. Memory dependence prediction is a technique to guess whether a load or a store will experience a dependence. Memory dependence prediction exploits regularity in the memory dependence stream of ordinary programs, a phenomenon which is also identified in this thesis. To demonstrate the utility of memory dependence prediction this thesis also presents the following three novel microarchitectural techniques: 1. Dynamic Speculation/Synchronization of Memory Dependences: this thesis demonstrates that to exploit parallelism over larger regions of code waiting to determine the dependences a load has is not the best performing option. Higher performance is possible if memory dependence speculation is used especially if memory dependence prediction is used to guide this speculation. 2. Speculative Memory Cloaking and Bypassing: this thesis approaches memory as either an interoperation communication or as a data-sharing mechanism. In the first case, memory is used to communicate values among instructions. In the second case, memory is used to hold values that are read repeatedly. Memory dependence prediction can be used to explicitly express either action so that loads can obtain a speculative value long before they can even access memory. Moreover, this thesis presents a technique to further reduce memory latency by linking directly the actual producer of a value with the actual consumers, taking loads and stores off the access path. 3. Transient Value Cache (TVC): Supporting highly-parallel execution requires the ability to perform multiple, simultaneous memory accesses. The TVC uses a small data cache to provide this support for a large fraction of loads while avoiding an increase in the latency of all other loads. This is achieved by using memory dependence prediction to selectively place the small data cache either inseries or in-parallel to the L1 cache.
The Blood Contribution to Early Myocardial Reperfusion Injury Is Amplified in Diabetes

Cardiovascular disease is excessive in diabetes, and blood cell function is altered. It is not clear, however, if alterations in the blood contribute to the excessive cardiovascular complications of this disease. In this study, we compared the contribution of nondiabetic and diabetic blood to myocardial reperfusion injury. The recovery of cardiac contractile function following no-flow ischemia was studied in isolated diabetic and nondiabetic rat hearts perfused with diabetic or nondiabetic diluted whole blood. Hearts were isolated from 10- to 12-week-old diabetic (streptozotocin, 65 mg/kg, i.v.) and nondiabetic rats and perfused with a Krebs-albumin-red cell solution (K2RBC, Hct 20%). After a 30-min pre-ischemic control period, during which cardiac pump function was evaluated, diabetic and nondiabetic hearts were perfused for 5 min with diluted whole blood (DWB; Hct 20%) collected from either diabetic or nondiabetic donor animals. Coronary flow was then stopped and the hearts subjected to 30 min of no-flow ischemia. Following ischemia, the hearts were reperfused with the K2RBC perfusate. Cardiac contractile function was evaluated throughout the 60-min reperfusion period. Six groups were studied: diabetic and nondiabetic hearts perfused before ischemia with either K2RBC, nondiabetic DWB (NDDWB), or diabetic DWB (DDWB). Perfusion with DWB prior to ischemia impaired the recovery of contractile function in all cases. The impairment to recovery was greater with DDWB than with NDDWB. Although diabetic hearts perfused with K2RBC throughout recovered quite well, the effect of DDWB perfusion in the diabetic hearts was dramatic. In an effort to determine why diabetic blood impaired functional recovery, measures of blood filterability and the generation of reactive oxygen species (ROS) were made. We found that diabetic blood was less filterable than nondiabetic blood; that is, the diabetic blood cells tended to plug the 5-μm filter pores more readily than the nondiabetic blood cells. Also, we found that the diabetic blood was capable of generating significantly greater ROS (oxygen free radicals) than nondiabetic blood (P < 0.05). These findings suggest that the blood contribution to myocardial reperfusion injury is amplified in diabetes. A tendency for diabetic blood cells to plug capillary-sized pores and show enhanced oxygen free radical production may account for the excessive contribution of diabetic blood to reperfusion injury in the heart.