Miracle-dz/UniFAR-FTUs huggingface dataset:
The tale of four researchers : trials and triumphs from the phenomenographic research specialization

This paper explores the tactics employed to overcome challenges, unique and common, for others new to or considering a foray into qualitative research using phenomenography. Each contributing author is a postgraduate student making use of the phenomenographical research specialisation in their thesis. Several reoccurring themes of difficulty repeatedly surfaced for the researchers, as well as unique problems specific to the research topic of each researcher. The first two contributors have identified the historical antecedents of phenomenography and identified the constructivist-interpretive approach of phenomenography. This is situated in a study of middle years teachers’ conceptions of “essential knowledge” in social science education, and a study of the qualitatively different ways in which lower primary school teachers in Papua New Guinea (PNG) understand outcomes-based education. The third contributor discusses practical issues with the most common form of data gathering in phenomenography, the interview, in relation to a study into primary school teachers’ conceptions of teaching science through inquiry learning. The fourth contributor discusses data analysis, the structure of awareness, and the ‘outcome space’ as part of a study into the roles of parents in home educated children. Common findings indicate that all researchers strove to understand the phenomenon from the perspective of the participants, and illustrate that phenomenography may be employed to answer a wide variety of research questions. The result is a mapping of personal encounters with the methodology that may prove useful to researchers seeking to better understand this qualitative research methodology.
Neural Correlates of Adolescent Behavior

Adolescence is a developmental stage between childhood and adulthood associated with numerous brain and behavioral changes. It is also a period of vulnerability, as adolescents tend to take more risks, and various psychiatric problems first typically manifest at this time. Yet little is known about the neuronal basis of these vulnerabilities. Although extracellular electrophysiological recording is a useful technique for measuring the neural activity of awake behaving animals, it had not yet been used to address the neural correlates of adolescent motivated behavior. This dissertation therefore had two primary objectives. The first was to characterize a novel behavioral task suitable for testing adolescent and adult rats. The second was to record the neural activity of brain regions involved in motivated behavior, as adolescents and adults performed it. The behavioral task was a simple instrumental learning paradigm, in which rats associated poking into a hole with the delivery of a food pellet reward. While the learning and performance of this task was similar between the two groups, adolescents persisted in this activity more than adults when reward was withheld. It was determined that this was due to different age-related sensitivities to the presence of certain motivational factors.After characterizing the task, it was performed by adolescent and adult rats that had electrode arrays implanted in their orbitofrontal cortex (OFC), nucleus accumbens (NAc), or dorsal striatum (DS). Neural activity was examined in the context of similar instrumental behavior to determine whether adolescents processed salient events in a fundamentally different way from adults. Several interesting neural processing differences were observed, along with some notable similarities. The greatest phasic activity differences were found in the OFC and DS, particularly during the period immediately before reward. Local field potential oscillations also tended to differ, with particular disparities found in the DS. In contrast, NAc activity tended to look similar between adolescents and adults, with a few exceptions. In addition to demonstrating fundamental age-related neural processing differences during motivated behavior, these findings address existing hypotheses and raise new questions relevant to the neural basis of the increased vulnerabilities of adolescence.
Applying Software Patterns to Address Interoperability in Blockchain-based Healthcare Apps

Since the inception of the Bitcoin technology, its underlying data structure--the blockchain--has garnered much attention due to properties such as decentralization, transparency, and immutability. These properties make blockchains suitable for apps that require disintermediation through trustless exchange, consistent and incorruptible transaction records, and operational models beyond cryptocurrency. In particular, blockchain and its smart contract capabilities have the potential to address healthcare interoperability issues, such as enabling effective interactions between users and medical applications, delivering patient data securely to a variety of organizations and devices, and improving the overall efficiency of medical practice workflow. Despite the interest in using blockchain for healthcare interoperability, however, little information is available on the concrete architectural styles and patterns for applying blockchain to healthcare apps. This paper provides an initial step in filling this gap by showing: (1) the features and implementation challenges in healthcare interoperability, (2) an end-to-end case study of a blockchain-based healthcare app we are developing, and (3) how applying foundational software patterns can help address common interoperability challenges faced by blockchain-based healthcare apps.
Functional Memory B Cells and Long-Lived Plasma Cells Are Generated after a Single Plasmodium chabaudi Infection in Mice

Antibodies have long been shown to play a critical role in naturally acquired immunity to malaria, but it has been suggested that Plasmodium-specific antibodies in humans may not be long lived. The cellular mechanisms underlying B cell and antibody responses are difficult to study in human infections; therefore, we have investigated the kinetics, duration and characteristics of the Plasmodium-specific memory B cell response in an infection of P. chabaudi in mice. Memory B cells and plasma cells specific for the C-terminal region of Merozoite Surface Protein 1 were detectable for more than eight months following primary infection. Furthermore, a classical memory response comprised predominantly of the T-cell dependent isotypes IgG2c, IgG2b and IgG1 was elicited upon rechallenge with the homologous parasite, confirming the generation of functional memory B cells. Using cyclophosphamide treatment to discriminate between long-lived and short-lived plasma cells, we demonstrated long-lived cells secreting Plasmodium-specific IgG in both bone marrow and in spleens of infected mice. The presence of these long-lived cells was independent of the presence of chronic infection, as removal of parasites with anti-malarial drugs had no impact on their numbers. Thus, in this model of malaria, both functional Plasmodium-specific memory B cells and long-lived plasma cells can be generated, suggesting that defects in generating these cell populations may not be the reason for generating short-lived antibody responses.
Value-added animal agriculture: inclusion of race and gender in the professional formula.

The Morrill Act establishing the land grant university system created public higher education institutions and paved the way for women and racial minorities to access them. Today women are -50% of the undergraduate population in animal science (AS) departments at the original land grant state universities, but racial minorities lag far behind, in part because the schools created under the 1890 legislation provided a diversion away from the state universities. Demographic trends from the U.S. Census and the Bureau of Labor Statistics indicate increasing positive growth in nonwhite workforce participation, with concurrent decreases in non-Hispanic male participation; men and women will be nearly equally represented by early in the 21st Century. In the faculties of AS departments, both women and minorities are seriously under-represented; causative factors underlying this phenomenon are similar. Although, historically, adherence to role stereotypes and divisions of labor explain some of the under-representation, these assumptions do not hold across all economic classes. Other factors contributing to the scarcity of women and faculty of color in AS include assumptions and mechanisms of scientific research itself; the very neutrality and disinterestedness of researchers, inherent in the scientific method, prevent recognition that values and personal biases affect decisions of hiring selections and mentoring effectiveness. We explore the cultural factors that underlie these values and biases that are common not only to agriculture but also to science more broadly.
Progressive color visual cryptography

Visual cryptography is a powerful technique that combines the notions of perfect ciphers and secret sharing in cryptography with that of raster graphics. A binary image can be divided into shares that can be stacked together to approximately recover the original image. Unfortunately, it has not been used much primarily because the decryption process entails a severe degradation in image quality in terms of loss of resolution and contrast. Its usage is also hampered by the lack of proper techniques for handling gray-scale and color images. We develop a novel technique that enables visual cryptography of color as well as gray-scale images. With the use of halftoning and a novel microblock encoding scheme, the technique has a unique flexibility that enables a single encryption of a color image but enables three types of decryptions on the same ciphertext. The three different types of decryptions enable the recovery of the image of varying qualities. The physical transparency stacking type of decryption enables the recovery of the traditional visual cryptography quality image. An enhanced stacking technique enables the decryption into a halftone quality image. Finally, a computation-based decryption scheme makes the perfect recovery of the original image possible. Based on this basic scheme, we establish a progressive mechanism to share color images at multiple resolutions. We extract shares from each resolution layer to construct a hierarchical structure; the images of different resolutions can then be restored by stacking the different shared images together. Thus, our technique enables flexible decryption. We implement our technique and present results.
Prediction of Transcriptional Terminators in Bacillus subtilis and Related Species

In prokaryotes, genes belonging to the same operon are transcribed in a single mRNA molecule. Transcription starts as the RNA polymerase binds to the promoter and continues until it reaches a transcriptional terminator. Some terminators rely on the presence of the Rho protein, whereas others function independently of Rho. Such Rho-independent terminators consist of an inverted repeat followed by a stretch of thymine residues, allowing us to predict their presence directly from the DNA sequence. Unlike in Escherichia coli, the Rho protein is dispensable in Bacillus subtilis, suggesting a limited role for Rho-dependent termination in this organism and possibly in other Firmicutes. We analyzed 463 experimentally known terminating sequences in B. subtilis and found a decision rule to distinguish Rho-independent transcriptional terminators from non-terminating sequences. The decision rule allowed us to find the boundaries of operons in B. subtilis with a sensitivity and specificity of about 94%. Using the same decision rule, we found an average sensitivity of 94% for 57 bacteria belonging to the Firmicutes phylum, and a considerably lower sensitivity for other bacteria. Our analysis shows that Rho-independent termination is dominant for Firmicutes in general, and that the properties of the transcriptional terminators are conserved. Terminator prediction can be used to reliably predict the operon structure in these organisms, even in the absence of experimentally known operons. Genome-wide predictions of Rho-independent terminators for the 57 Firmicutes are available in the Supporting Information section.
A Mid-Life Vitamin A Supplementation Prevents Age-Related Spatial Memory Deficits and Hippocampal Neurogenesis Alterations through CRABP-I

Age-related memory decline including spatial reference memory is considered to begin at middle-age and coincides with reduced adult hippocampal neurogenesis. Moreover, a dysfunction of vitamin A hippocampal signalling pathway has been involved in the appearance of age-related memory deficits but also in adult hippocampal neurogenesis alterations. The present study aims at testing the hypothesis that a mid-life vitamin A supplementation would be a successful strategy to prevent age-related memory deficits. Thus, middle-aged Wistar rats were submitted to a vitamin A enriched diet and were tested 4 months later in a spatial memory task. In order to better understand the potential mechanisms mediating the effects of vitamin A supplementation on hippocampal functions, we studied different aspects of hippocampal adult neurogenesis and evaluated hippocampal CRABP-I expression, known to modulate differentiation processes. Here, we show that vitamin A supplementation from middle-age enhances spatial memory and improves the dendritic arborisation of newborn immature neurons probably resulting in a better survival and neuronal differentiation in aged rats. Moreover, our results suggest that hippocampal CRABP-I expression which controls the intracellular availability of retinoic acid (RA), may be an important regulator of neuronal differentiation processes in the aged hippocampus. Thus, vitamin A supplementation from middle-age could be a good strategy to maintain hippocampal plasticity and functions.
Successful Treatment in a Child with Anaplastic Large Cell Lymphoma and Coexistence of Pulmonary Tuberculosis

A 13-year-old girl was admitted to our department with a history of severe pain of her left axilla and fever. On physical examination, a block of lymph nodes in her left axilla, diffuse papular rash, and red-violet swelling of her supraclavicular and subclavian region were noted. Imaging investigations revealed left axillar and supraclavicular lymphadenopathy and a small nodular shade in the upper lobe of her left lung. A biopsy from an axillary lymph node established the diagnosis of anaplastic large cell lymphoma (ALCL), whereas DNA of Mycobacterium tuberculosis was detected by polymerase chain reaction (PCR) in the same tissue biopsy. Patient was started on chemotherapy for ALCL and achieved remission of all initially involved fields. Nevertheless, two new nodular lesions were detected in the left lower lobe. Biopsy revealed granulomas, and PCR was positive for M. tuberculosis. Our patient received treatment with the combination of isoniazid and rifampin (12 months), pyrazinamide (the first 2 months), and maintenance chemotherapy for her ALCL for one year simultaneously. Four years later, she is disease free for both mycobacterial infection and lymphoma. We are reporting this successful management of mycobacterial infection in a patient with ALCL despite intensive chemotherapy that the patient received at the same time.
Loss of Melanopsin Photoreception and Antagonism of the Histamine H3 Receptor by Ciproxifan Inhibit Light-Induced Sleep in Mice

Light has direct effects on sleep and wakefulness causing arousal in diurnal animals and sleep in nocturnal animals. In the present study, we assessed the modulation of light-induced sleep by melanopsin and the histaminergic system by exposing mice to millisecond light flashes and continuous light respectively. First, we show that the induction of sleep by millisecond light flashes is dose dependent as a function of light flash number. We found that exposure to 60 flashes of light occurring once every 60 seconds for 1-h (120-ms of total light over an hour) induced a similar amount of sleep as a continuous bright light pulse. Secondly, the induction of sleep by millisecond light flashes was attenuated in the absence of melanopsin when animals were presented with flashes occurring every 60 seconds over a 3-h period beginning at ZT13. Lastly, the acute administration of a histamine H3 autoreceptor antagonist, ciproxifan, blocked the induction of sleep by a 1-h continuous light pulse during the dark period. Ciproxifan caused a decrease in NREMS delta power and an increase in theta activity during both sleep and wake periods respectively. The data suggest that some form of temporal integration occurs in response to millisecond light flashes, and that this process requires melanopsin photoreception. Furthermore, the pharmacological data suggest that the increase of histaminergic neurotransmission is sufficient to attenuate the light-induced sleep response during the dark period.
Hate Online: A Content Analysis of Extremist Internet Sites

Extremists, such as hate groups espousing racial supremacy or separation, have established an online presence. A content analysis of 157 extremist web sites selected through purposive sampling was conducted using two raters per site. The sample represented a variety of extremist groups and included both organized groups and sites maintained by apparently unaffiliated individuals. Among the findings were that the majority of sites contained external links to other extremist sites (including international sites), that roughly half the sites included multimedia content, and that half contained racist symbols. A third of the sites disavowed racism or hatred, yet one third contained material from supremacist literature. A small percentage of sites specifically urged violence. These and other findings suggest that the Internet may be an especially powerful tool for extremists as a means of reaching an international audience, recruiting members, linking diverse extremist groups, and allowing maximum image control.
Some Insults are Easier to Detect: The Embodied Insult Detection Effect

In the present research we examined the effects of bodily experience on processing of insults in a series of semantic categorization tasks we call insult detection tasks (i.e., participants decided whether presented stimuli were insults or not). Two types of insults were used: more embodied insults (e.g., asswipe, ugly), and less embodied insults (e.g., cheapskate, twit), as well as non-insults. In Experiments 1 and 2 the non-insults did not form a single, coherent category (e.g., airbase, polka), whereas in Experiment 3 all the non-insults were compliments (e.g., eyeful, honest). Regardless of type of non-insult used, we observed facilitatory embodied insult effects such that more embodied insults were responded to faster and recalled more often than less embodied insults. In Experiment 4 we used a larger set of insults as stimuli, which allowed hierarchical multiple regression analyses. These analyses revealed that bodily experience ratings accounted for a significant amount of unique response latency, response error, and recall variability for responses to insults, even with several other predictor variables (e.g., frequency, offensiveness, imageability) included in the analyses: responses were faster and more accurate, and there was greater recall for relatively more embodied insults. These results demonstrate that conceptual knowledge of insults is grounded in knowledge gained through bodily experience.
Helping Young Hispanic Learners.

Although we may label various racial and ethnic groups “at risk” in terms of education outcomes, many are less at risk in certain areas than the majority population. Empirical studies have shown, for example, that compared with children from U.S.-born families, children from poor immigrant families have lower infant mortality rates, suffer from fewer physical and mental health problems, and are less likely to engage in such risky behaviors as substance abuse, early sexual intercourse, and delinquent or violent activity (Shields & Behrman, 2004).
Morphological Determinants of Echocardiographic Patterns of Mitral Valve Systolic AnteriorMotion in Obstructive Hypertrophic Cardiomyopathy

BackgroundThe morphological determinants of mitral valve systolic anterior motion (SAM) and obstruction to left ventricular outflow in patients within the broad clinical spectrum of hypertrophic cardiomyopathy (HCM) are not completely understood, particularl the contribution of mitral leaflet length and size. Methods and ResultsTo clarify this issue, mitral valve specimens from 43 patients with HCM and basal outflow obstruction were used to relate morphometric measurements of leaflet area to certain morphological and functional assessments of left ventricular outflow tract geometry and valvular motion obtained from echocardiograms in the same patients. Twenty-four patients (56%) had mitral valves of normal size (leaflet area < 12.0 cm2) and 19 patients (44%) had enlarged and elongated valves (area >12.0 cm2). Compared with normal-sized mitral valves, the enlarged valves were situated more posteriorly in a larger left ventricular outflow tract (cross-sectional area, 3.3±1.0 versus 1.9±0.7 cm2 for normal-sized valves; p<0.001) and also had greater systolic excursion of the anterior leaflet (16.2±4.5 versus 13.3±3.3 mm, p<0.02), usually with a distinctive sharp-angled bend and localized contact of the leaflet tip with ventricular septum (“typical” SAM); this pattern of SAM was possible because the central and distal portions of the leaflet were relatively free of fibrous thickening. In contrast, normal-sized mitral valves were situated more anteriorally in a smaller left ventricular outflow tract and frequently showed a different mechanism of SAM and subaortic obstruction with relatively limited leaflet motion, absence of a sharp bend, and septal contact involving more substantial portions of the anterior leaflet and contiguous chordae (“atypical” SAM); mitral-septal apposition was effected in large measure by posterior ventricular septal motion. This pattern of SAM was invariably associated with a more diffuse pattern of fibrous thickening. ConclusionsPatients with obstructive HCM show patterns of mitral valve SAM that are diverse and determined largely by the interrelation of left ventricular outflow tract geometry, the size and mobility of the mitral leaflets, and the presence and distribution of fibrous thickening.