Miracle-dz/UniFAR-FTUs huggingface dataset:
Glacial ocean circulation and stratification explained by reduced atmospheric temperature

Significance To understand climatic swings between glacial and interglacial climates we need to explain the observed fluctuations in atmospheric carbon dioxide (CO2), which in turn are most likely driven by changes in the deep ocean circulation. This study presents a model for differences in the deep ocean circulation between glacial and interglacial climates consistent with both our physical understanding and various proxy observations. The results suggest that observed changes in ocean circulation and stratification are caused directly by atmospheric cooling or warming, which has important implications for our interpretation of glacial–interglacial transitions. In particular, the direct link between atmospheric temperature and ocean circulation changes supports the notion of a positive feedback loop between atmospheric temperature, ocean circulation, and atmospheric CO2. Earth’s climate has undergone dramatic shifts between glacial and interglacial time periods, with high-latitude temperature changes on the order of 5–10 °C. These climatic shifts have been associated with major rearrangements in the deep ocean circulation and stratification, which have likely played an important role in the observed atmospheric carbon dioxide swings by affecting the partitioning of carbon between the atmosphere and the ocean. The mechanisms by which the deep ocean circulation changed, however, are still unclear and represent a major challenge to our understanding of glacial climates. This study shows that various inferred changes in the deep ocean circulation and stratification between glacial and interglacial climates can be interpreted as a direct consequence of atmospheric temperature differences. Colder atmospheric temperatures lead to increased sea ice cover and formation rate around Antarctica. The associated enhanced brine rejection leads to a strongly increased deep ocean stratification, consistent with high abyssal salinities inferred for the last glacial maximum. The increased stratification goes together with a weakening and shoaling of the interhemispheric overturning circulation, again consistent with proxy evidence for the last glacial. The shallower interhemispheric overturning circulation makes room for slowly moving water of Antarctic origin, which explains the observed middepth radiocarbon age maximum and may play an important role in ocean carbon storage.
Robust algorithm for real-time route planning

Route planning for intelligent guidance and navigation systems is an extremely complex problem with both military and commercial applications. Standard route planning algorithms usually generate a minimum cost route based on a predetermined cost function. Unfortunately, such a solution may not represent a desirable route for various mission scenarios. We present a novel route planning approach to generate mission-adaptable routes in an accurate and efficient manner. The routes are computed in real-time and are able to take into account various mission constraints including: minimum route leg length, maximum turning angle, route distance constraint, and fixed approach vector to goal position.
Male aggression during mating: evidence for sexual coercion in a female dominant primate?

In this article we document male sexual coercion of a Lemur catta female on St. Catherines Island (SCI), USA. Data presented in this paper were collected on one free‐ranging L. catta group during October–November 2002 using all‐occurrences sampling for agonism and reproductive behavior. We observed a male forcefully attempting to mate with a year‐old estrous female. Despite the fact that we observed this female to present to the male during her estrus, throughout the episode the male employed the use of force, and achieved penile intromission on at least one occasion while the female struggled and resisted. We interpret his behavior as sexual coercion. As measured by sexual presents, the female appeared to more strongly prefer two other males as mates, yet each of these males gained fewer mounts and less cumulative time spent in mounts than the coercive male. The coercive male was one of two group males with the lowest observed mating success, suggesting that coercion might be a strategy used by males who are not highly sexually preferred. Females undergo early sexual maturation at this site owing to provisioning, and can therefore enter estrus before fully attaining dominance over males. As such, these data suggest that one consequence of provisioning a wild L. catta population (or of maintaining L. catta in captivity) may be that young females can be the targets of sexual coercion if they reach sexual maturity before fully achieving social dominance over males. In conclusion, male sexual coercion can occur in L. catta despite the female dominance characteristic of this species, and can constrain the mating behavior of females. Am. J. Primatol. 70:1187–1190, 2008. © 2008 Wiley‐Liss, Inc.
Involvement of Fnr and ArcA in anaerobic expression of the tdc operon of Escherichia coli

Anaerobic expression of the tdcABC operon in Escherichia coli, as measured by LacZ activity from single-copy tdc-lacZ transcriptional and translational fusions, is greatly reduced in strains lacking two global transcriptional regulators, Fnr and ArcA. The nucleotide sequence of the tdc promoter around -145 shows significant similarity with the consensus Fnr-binding site; however, extensive base substitutions within this region had no effect on Fnr regulation of the tdc genes. A genetic analysis revealed that the effect of Fnr on tdc is not mediated via ArcA. Furthermore, addition of cyclic AMP to the anaerobic incubation medium completely restored tdc expression in fnr and arcA mutants as well as in strains harboring mutations in the Fnr- and ArcA-dependent pfl gene and the Fnr-regulated glpA and frd genes. These results, taken together with the earlier finding that tdc expression is subject to catabolite repression by intermediary metabolites, strongly suggest that the negative regulatory effects of mutations in the fnr and arcA genes are mediated physiologically due to accumulation of a metabolite(s) which prevents tdc transcription in vivo.
Estimating a weighted average of stratum‐specific parameters

This article investigates estimators of a weighted average of stratum‐specific univariate parameters and compares them in terms of a design‐based estimate of mean‐squared error (MSE). The research is motivated by a stratified survey sample of Florida Medicaid beneficiaries, in which the parameters are population stratum means and the weights are known and determined by the population sampling frame. Assuming heterogeneous parameters, it is common to estimate the weighted average with the weighted sum of sample stratum means; under homogeneity, one ignores the known weights in favor of precision weighting. Adaptive estimators arise from random effects models for the parameters. We propose adaptive estimators motivated from these random effects models, but we compare their design‐based performance. We further propose selecting the tuning parameter to minimize a design‐based estimate of mean‐squared error. This differs from the model‐based approach of selecting the tuning parameter to accurately represent the heterogeneity of stratum means. Our design‐based approach effectively downweights strata with small weights in the assessment of homogeneity, which can lead to a smaller MSE. We compare the standard random effects model with identically distributed parameters to a novel alternative, which models the variances of the parameters as inversely proportional to the known weights. We also present theoretical and computational details for estimators based on a general class of random effects models. The methods are applied to estimate average satisfaction with health plan and care among Florida beneficiaries just prior to Medicaid reform. Copyright © 2008 John Wiley & Sons, Ltd.
An Ancient Mechanism Controls the Development of Cells with a Rooting Function in Land Plants

Root hairs and rhizoids are cells with rooting functions in land plants. We describe two basic helix-loop-helix transcription factors that control root hair development in the sporophyte (2n) of the angiosperm Arabidopsis thaliana and rhizoid development in the gametophytes (n) of the bryophyte Physcomitrella patens. The phylogeny of land plants supports the hypothesis that early land plants were bryophyte-like and possessed a dominant gametophyte and later the sporophyte rose to dominance. If this hypothesis is correct, our data suggest that the increase in morphological complexity of the sporophyte body in the Paleozoic resulted at least in part from the recruitment of regulatory genes from gametophyte to sporophyte.
An efficient compensatory neuro-fuzzy system and its applications

In this study, a compensatory neuro-fuzzy system (CNFS) is proposed. The compensatory fuzzy reasoning method uses adaptive fuzzy operations of a neuro-fuzzy system to make the fuzzy logic system more adaptive and effective. Furthermore, an online learning algorithm that consists of structure learning and parameter learning is proposed to automatically construct the CNFS. The structure learning is based on the fuzzy similarity measure to determine the number of fuzzy rules, and the parameter learning is based on backpropagation algorithm to adjust the parameters. The simulation results have shown that (1) the CNFS model converges quickly and (2) the CNFS model has a lower root mean square (RMS) error than other models.
Effect of an isocaloric carbohydrate-protein-antioxidant drink on cycling performance.

PURPOSE Fourteen male cyclists were studied to compare the effect of carbohydrate-protein-antioxidant beverage (CHOPA) to an isocaloric carbohydrate-only (CHO) beverage on time to fatigue and muscle damage. METHODS Subjects performed two sets of rides to exhaustion on a cycle ergometer. In each set, the first ride was performed at 70% VO2peak, and the second was performed 24 h later at 80%. CHO or CHOPA was consumed every 15 min during exercise and immediately afterward. Plasma CK and LDH and muscle soreness were measured pre- and postexercise. RESULTS Time to fatigue was not different between CHO and CHOPA at 70% VO2peak (95.8 +/- 29.7 vs 98.1 +/- 28.7 min), 80% VO2peak (42.3 +/- 18.6 vs 42.9 +/- 21.8 min), or total performance time (138.1 +/- 39.3 vs 140.9 +/- 43.7 min). Postexercise CK was increased (P < 0.05) from baseline in CHO (203 +/- 120 vs 582 +/- 475 U.L(-1)) but not with CHOPA (188 +/- 119 vs 273 +/- 169 U.L(-1)). Similarly, LDH values increased over baseline in CHO (437 +/- 46 vs 495 +/- 64 U.L(-1)) but not with CHOPA (432 +/- 40 vs 451 +/- 43 U.L(-1)). Postexercise CPK and LDH were higher after the CHO trial than after the CHOPA trial. Median postexercise muscle soreness was higher in CHO (3.0 +/- 5.0) than with CHOPA (1.0 +/- 3.0). CONCLUSION No differences in time to fatigue were observed between the beverages, despite lower total carbohydrate content in the CHOPA beverage. The CHOPA beverage attenuated postexercise muscle damage, as evidenced by CK and LDH values, compared with an isocaloric CHO beverage.
Cognitive-Behavioral Therapy for Somatization and Symptom Syndromes: A Critical Review of Controlled Clinical Trials

Objective: Few treatments for somatization have been proven effective. In the past decade, however, clinical trials of cognitive-behavioral therapy (CBT) have been promising. Our aim was to critically review and synthesize the evidence from these trials. Methods: A search of the Medline database from 1966 through July 1999 was conducted to identify controlled trials designed to evaluate the efficacy of CBT in patients with somatization or symptom syndromes. Results: A total of 31 controlled trials (29 randomized and 2 nonrandomized) were identified. Twenty-five studies targeted a specific syndrome (e.g. chronic fatigue, irritable bowel, pain) while 6 focused on more general somatization or hypochondriasis. Primary outcome assessment included physical symptoms, psychological distress and functional status in 28, 26 and 19 studies, respectively. Physical symptoms appeared the most responsive: CBT-treated patients improved more than control subjects in 71% of the studies and showed possibly greater improvement (i.e., a trend) in another 11% of the studies. A definite or possible advantage of CBT for reducing psychological distress was demonstrated in only 38 and 8% of studies, and for improving functional status in 47 and 26%. Group therapy and interventions as brief as 5 sessions proved efficacious. Benefits were sustained for up to 12 months. Conclusion: CBT can be an effective treatment for patients with somatization or symptom syndromes. Benefits can occur whether or not psychological distress is ameliorated. Since chronic symptoms are exceptionally common and most studies were conducted in referral populations, the optimal sequencing of CBT in treating primary care patients and the identification of those most likely to accept and respond to therapy should be further evaluated.
Recent advances in understanding the role of the hypothalamic circuit during aggression

The hypothalamus was first implicated in the classic “fight or flight” response nearly a century ago, and since then, many important strides have been made in understanding both the circuitry and the neural dynamics underlying the generation of these behaviors. In this review, we will focus on the role of the hypothalamus in aggression, paying particular attention to recent advances in the field that have allowed for functional identification of relevant hypothalamic subnuclei. Recent progress in this field has been aided by the development of new techniques for functional manipulation including optogenetics and pharmacogenetics, as well as advances in technology used for chronic in vivo recordings during complex social behaviors. We will examine the role of the hypothalamus through the complimentary lenses of (1) loss of function studies, including pharmacology and pharmacogenetics; (2) gain of function studies, including specific comparisons between results from classic electrical stimulation studies and more recent work using optogenetics; and (3) neural activity, including both immediate early gene and awake-behaving recordings. Lastly, we will outline current approaches to identifying the precise role of the hypothalamus in promoting aggressive motivation and aggressive action.
A perceptual investigation of speech transcription errors involving frequent near-homophones in French and american English

This article compares the errors made by automatic speech recognizers to those made by humans for near-homophones in American English and French. This exploratory study focuses on the impact of limited word context and the potential resulting ambiguities for automatic speech recognition (ASR) systems and human listeners. Perceptual experiments using 7-gram chunks centered on incorrect or correct words output by an ASR system, show that humans make significantly more transcription errors on the first type of stimuli, thus highlighting the local ambiguity. The long-term aim of this study is to improve the modeling of such ambiguous items in order to reduce ASR errors.
Predicting Arabidopsis Freezing Tolerance and Heterosis in Freezing Tolerance from Metabolite Composition

Heterosis, or hybrid vigor, is one of the most important tools in plant breeding and has previously been demonstrated for plant freezing tolerance. Freezing tolerance is an important trait because it can limit the geographical distribution of plants and their agricultural yield. Plants from temperate climates increase in freezing tolerance during exposure to low, non-freezing temperatures in a process termed ‘cold acclimation’. Metabolite profiling has indicated a major reprogramming of plant metabolism in the cold, but it has remained unclear in previous studies which of these changes are related to freezing tolerance. In the present study, we have used metabolic profiling to discover combinations of metabolites that predict freezing tolerance and its heterosis in Arabidopsis thaliana. We identified compatible solutes and, in particular, the pathway leading to raffinose as crucial statistical predictors for freezing tolerance and its heterosis, while some TCA cycle intermediates contribute only to predicting the heterotic phenotype. This indicates coordinate links between heterosis and metabolic pathways, suggesting that a limited number of regulatory genes may determine the extent of heterosis in this complex trait. In addition, several unidentified metabolites strongly contributed to the prediction of both freezing tolerance and its heterosis and we present an exemplary analysis of one of these, identifying it as a hexose conjugate.
Diagnosing variant Creutzfeldt-Jakob disease with the pulvinar sign: MR imaging findings in 86 neuropathologically confirmed cases.

BACKGROUND AND PURPOSE Variant Creutzfeldt-Jakob disease (vCJD) is a rare but important cause of dementia and death in young patients and is causally linked to bovine spongiform encephalopathy. Symmetrical hyperintensity in the pulvinar (posterior) nuclei of the thalamus (pulvinar sign) on brain MR images was described as a specific, noninvasive, diagnostic sign of vCJD in a previous small series. This purpose of this larger study was to evaluate this sign prospectively and further define the MR imaging characteristics of vCJD. METHODS As part of the ongoing surveillance program in the United Kingdom, MR images of suspected cases of vCJD were collected during a 6-year period. All available images were assessed prospectively by one observer for the presence of the pulvinar sign. Images of neuropathologically confirmed cases were then assessed independently by two neuroradiologists for the degree of hyperintensity of the pulvinar on images of different MR sequences, and for the presence of abnormal hyperintensity in other areas of the brain. Discrepancies were reviewed jointly and a consensus opinion formed. RESULTS Prospective analysis identified the pulvinar sign in 74 of 82 cases of vCJD. In the retrospective study, the pulvinar sign, as defined by hyperintensity of the pulvinar relative to the anterior putamen, was present on seven (9%) of 75 T1-weighted, 77 (71%) of 108 T2-weighted, 47 (81%) of 58 proton density-weighted, and 30 (100%) of 30 fluid-attenuated inversion-recovery (FLAIR) images. Diffusion-weighted images were available in two cases and were positive for the pulvinar sign in one. Other features were hyperintensity of the dorsomedial thalamic nuclei (93%), caudate head (40%), and periaqueductal gray matter (83%) on FLAIR images. CONCLUSION In the appropriate clinical context, demonstration of the pulvinar sign on MR images is a highly accurate diagnostic sign for vCJD. FLAIR sequence is more sensitive than other sequences. Positive MR images may obviate more invasive diagnostic tests in most cases.
A scalable video-on-demand system using multi-batch buffering techniques

A video-on-demand (VoD) system delivers videos on demand over an installed network. Due to the large size of digitized videos, expensive video servers with high I/O capability are needed in order to provide VoD services in metropolitan areas. In addition, there is a great need for efficient networking distribution/interaction schemes so that the video servers can serve as many clients as possible. In particular, because of scalability problems, the classical unicast VoD system is not suitable for large-scale deployments. In this paper, a highly scalable VoD system with a low per-user cost is described and evaluated. We first analyze the performance degradation problems using recently proposed VoD systems, namely batched and centralized-buffer VoD systems that occur during the handling of interactions. Then a new system called the multi-batch buffer (MBB) system, which attempts to solve these problems, is proposed. The proposed system handles a majority of interaction requests by scalable buffering techniques employed in the buffer of the local servers and the set-top boxes (STB). We have performed extensive simulation for the analysis and performance evaluation of our proposed VoD system. The simulation results demonstrate that our VoD system is very scalable and outperforms related state-of-the-art VoD systems.
Mechanical Characterization of Friction Stir Channels under Internal Pressure and In-Plane Bending

Friction Stir Channelling (FSC) is a simple and innovative technique of manufacturing integral and continuous channels (also referred as conformal channels) in monolithic plates in a single step. This paper is focused on the mechanical behaviour of integral and continuous FS channels produced in a monolithic plate of the aluminium alloy AA7178‑T6 with 13mm of thickness, typically used in structural aircraft applications. Internal pressure tests were conducted on specimens with a longitudinal friction stir channel. In-plane bending tests were carried out in specimens with longitudinal and transversal channels; different conditions were analysed for each FSC parameters set. Results were analysed and compared concerning the FS channels microstructure and base material mechanical properties. Bending tests results show that tool rotation speed has more influence in the FSC specimens bending strength than tool travel speed and internal pressure tests show that increase tool rotation speed increases the minimum pressure that leaking points arise.
Generalized Fisher Score for Feature Selection

Fisher score is one of the most widely used supervised feature selection methods. However, it selects each feature independently according to their scores under the Fisher criterion, which leads to a suboptimal subset of features. In this paper, we present a generalized Fisher score to jointly select features. It aims at finding an subset of features, which maximize the lower bound of traditional Fisher score. The resulting feature selection problem is a mixed integer programming, which can be reformulated as a quadratically constrained linear programming (QCLP). It is solved by cutting plane algorithm, in each iteration of which a multiple kernel learning problem is solved alternatively by multivariate ridge regression and projected gradient descent. Experiments on benchmark data sets indicate that the proposed method outperforms Fisher score as well as many other state-of-the-art feature selection methods.
Effect of selective dorsal rhizotomy in the treatment of children with cerebral palsy.

OBJECT In this investigation the authors compared impairment and functional outcomes between two groups of children with cerebral palsy (CP): one group underwent selective dorsal rhizotomy (SDR) followed by intensive physical therapy (PT), and the other group underwent the latter only (PT group). Data from an age-matched group of children without disability (nondisabled [ND] group) were also collected. METHODS Data pertaining to the 68 children with CP were collected before any intervention and again 8 and 20 months afterwards. Data regarding the 40 children in the ND group were collected in a single session. CONCLUSIONS Although patients in both groups with CP were weaker than those in the ND group, they did have strength gains. Gait speed in the SDR-PT group was slower than that in the ND group preoperatively but not at 20 months postoperatively. Gait speed in the PT group remained slower than that in the ND group. The pre- to postoperative change in the Gross Motor Abilities Estimate score was significantly greater in the SDR-PT group than in the PT-only group. An effective treatment for children with CP, SDR offers gains in strength, gait speed, and overall gross motor function.