Miracle-dz/UniFAR-FTUs huggingface dataset:
Development of a Novel PVA-PLGA Hollow Fibre Bioreactor for Tissue Engineering

Tissue engineering offers a potential alternative therapy to overcome the limitations of organ transplantation, by employing biomaterials as scaffold for cell growth. For example, poly-lactic-co-glycolic acid (PLGA) is a synthetic biomaterial widely used in tissue engineering. However, the hydrophobicity of PLGA results in scaffolds that are poorly wettable, and which, therefore, possess poor mass transfer properties for the delivery of nutrients and the removal of waste. The present work aimed to develop more hydrophilic PLGA scaffolds, specifically hollow fibre membranes, within a bioreactor system, which enables co-culture of cells in order to direct stem cell differentiation. Large quantities of costly growth factors are required over long periods for stem cell differentiation. Therefore, this project also aimed to use a cell line as a “factory” for the inexpensive, in situ growth factor production. Hollow fibres were fabricated by wet spinning and a hydrophilic polymer, polyvinyl alcohol (PVA), was added to the PLGA solution at three different concentrations (1.25, 2.5, 5% w/w) in order to obtain a more hydrophilic membrane. Results indicated that 5% PVA-PLGA hollow fibres were the only membranes which allowed permeation of water, BSA and cell-secreted hepatocyte growth factor (HGF), thus indicating that they are the most suitable membranes for use in bioreactor devices. However, these membranes failed to improve cell-attachment. Cell secreted HGF was shown to be more stable in a dynamic culture environment than commercial HGF, thus suggesting its suitability for applications in bioreactor devices. However, using both commercial and cell-secreted HGF, mesenchymal stem cell differentiation was unsuccessful. In conclusion, this work has developed a hollow fibre membrane which is more permeable to water and proteins for a higher mass transfer of nutrients, and has realised a model system for the inexpensive production of growth factors for use in bioreactor devices and the differentiation of stem cells.
Determinants of adherence to highly active antiretroviral therapy among HIV-1-infected patients in Côte d'Ivoire

Objective:To assess adherence to HAART and to determine factors associated with poor adherence among HIV-1-infected patients in Abidjan, Côte d'Ivoire. Methods:A prospective observational study of 614 consecutive patients attending an HIV/AIDS outpatient clinic. Adherence was measured twice at 3-month intervals by self-report of missing doses over 4 days. An adherence level of less than 95% was defined as poor adherence. We used generalized estimating equation models for binomial distribution with repeated measures for data analysis. Results:Of the 591 subjects who completed the study, 74.3% reported adherence levels of 95% or greater. Six factors were independently related to poor adherence: age less than 35 years [relative risk (RR) 1.45; 95% confidence interval (CI) 1.17–1.79], absence of social support (RR 1.66; 95% CI 1.24–2.24), number of daily pills 10 or more (RR 1.47; 95% CI 1.14–1.91), time of adherence assessment (first versus second time assessment RR 1.36; 95% CI 1.12–1.66), CD4 cell count of 250 cells/μl or greater (RR 1.43; 95% CI 1.10–1.88), and not being less worried about HIV infection now that treatments have improved (RR 1.26; 95% CI 1.01–1.58). Drug supply interruptions in the pharmacies were reported by 10.0% of the non-adherent patients as the reason for missing pills. Conclusion:Psychosocial factors were found to impact adherence and should be analysed in more detail by further studies. Scaling up antiretroviral therapy in sub-Saharan Africa should be preceded by reliable drug supply and distribution systems.
Gene ranking and biomarker discovery under correlation

MOTIVATION Biomarker discovery and gene ranking is a standard task in genomic high-throughput analysis. Typically, the ordering of markers is based on a stabilized variant of the t-score, such as the moderated t or the SAM statistic. However, these procedures ignore gene-gene correlations, which may have a profound impact on the gene orderings and on the power of the subsequent tests. RESULTS We propose a simple procedure that adjusts gene-wise t-statistics to take account of correlations among genes. The resulting correlation-adjusted t-scores ('cat' scores) are derived from a predictive perspective, i.e. as a score for variable selection to discriminate group membership in two-class linear discriminant analysis. In the absence of correlation the cat score reduces to the standard t-score. Moreover, using the cat score it is straightforward to evaluate groups of features (i.e. gene sets). For computation of the cat score from small sample data, we propose a shrinkage procedure. In a comparative study comprising six different synthetic and empirical correlation structures, we show that the cat score improves estimation of gene orderings and leads to higher power for fixed true discovery rate, and vice versa. Finally, we also illustrate the cat score by analyzing metabolomic data. AVAILABILITY The shrinkage cat score is implemented in the R package 'st', which is freely available under the terms of the GNU General Public License (version 3 or later) from CRAN (http://cran.r-project.org/web/packages/st/).
Human Umbilical Cord Blood-Derived Mesenchymal Stem Cells Contribute to Chondrogenesis in Coculture with Chondrocytes

Human umbilical cord blood-derived mesenchymal stem cells (hUCB-MSCs) have been shown as the most potential stem cell source for articular cartilage repair. In this study, we aimed to develop a method for long-term coculture of human articular chondrocytes (hACs) and hUCB-MSCs at low density in vitro to determine if the low density of hACs could enhance the hUCB-MSC chondrogenic differentiation as well as to determine the optimal ratio of the two cell types. Also, we compared the difference between direct coculture and indirect coculture at low density. Monolayer cultures of hUCB-MSCs and hACs were investigated at different ratios, at direct cell-cell contact groups for 21 days. Compared to direct coculture, hUCB-MSCs and hACs indirect contact culture significantly increased type II collagen (COL2) and decreased type I collagen (COL1) protein expression levels. SRY-box 9 (SOX9) mRNA levels and protein expression were highest in indirect coculture. Overall, these results indicate that low density direct coculture induces fibrocartilage. However, indirect coculture in conditioned chondrocyte cell culture medium can increase expression of chondrogenic markers and induce hUCB-MSCs differentiation into mature chondrocytes. This work demonstrates that it is possible to promote chondrogenesis of hUCB-MSCs in combination with hACs, further supporting the concept of novel coculture strategies for tissue engineering.
Efalizumab for the Treatment of Psoriatic Arthritis

Background: Psoriatic arthritis (PsA) is an inflammatory arthritis associated with psoriasis. Efalizumab, a T cell-targeted, recombinant human monoclonal antibody, is approved for the treatment of adult patients with chronic moderate to severe plaque psoriasis. The effect of efalizumab therapy on PsA has not previously been investigated. Objective: This phase II randomized, double-blind, placebo-controlled multicenter study evaluated the efficacy and safety of efalizumab for the treatment of PsA. Methods: Patients were required to be on at least one of the following concomitant systemic therapies for PsA: nonsteroidal anti-inflammatory drugs, corticosteroids, and/or sulfasalazine or methotrexate. One hundred fifteen patients with active PsA were enrolled and randomized in the study. Of these, 107 were treated weekly with efalizumab 1 mg/kg or placebo for 12 weeks, followed by 12 additional weeks of open-label efalizumab. Results: At week 12, 28% of efalizumab-treated patients achieved ACR-20 response (a 20% reduction from the baseline in the American College of Rheumatology response criteria), the primary end point, compared with 19% of placebo patients (p = .27). The safety profile was comparable between efalizumab- and placebo-treated patient groups, regardless of methotrexate background therapy, and no worsening of joint disease occurred with efalizumab therapy. Conclusions: Efalizumab was not effective in treating PsA; efalizumab therapy did not worsen PsA. The efalizumab safety profile does not appear to be altered with the concomitant use of methotrexate therapy.
Assessing cardiac function from total-variation-regularized 4D C-arm CT in the presence of angular undersampling

Time-resolved tomographic cardiac imaging using an angiographic C-arm device may support clinicians during minimally invasive therapy by enabling a thorough analysis of the heart function directly in the catheter laboratory. However, clinically feasible acquisition protocols entail a highly challenging reconstruction problem which suffers from sparse angular sampling of the trajectory. Compressed sensing theory promises that useful images can be recovered despite massive undersampling by means of sparsity-based regularization. For a multitude of reasons—most notably the desired reduction of scan time, dose and contrast agent required—it is of great interest to know just how little data is actually sufficient for a certain task. In this work, we apply a convex optimization approach based on primal-dual splitting to 4D cardiac C-arm computed tomography. We examine how the quality of spatially and temporally total-variation-regularized reconstruction degrades when using as few as 6.9±1.2 projection views per heart phase. First, feasible regularization weights are determined in a numerical phantom study, demonstrating the individual benefits of both regularizers. Secondly, a task-based evaluation is performed in eight clinical patients. Semi-automatic segmentation-based volume measurements of the left ventricular blood pool performed on strongly undersampled images show a correlation of close to 99% with measurements obtained from less sparsely sampled data.
A SCANNING ELECTRON MICROSCOPE STUDY OF SURFACE FEATURES OF VIRAL AND SPONTANEOUS TRANSFORMANTS OF MOUSE BALB/3T3 CELLS

Cells of the mouse line Balb/3T3 as well as three virus-induced transformants and two spontaneous transformants grown in vitro have been studied for their topography by scanning electron microscopy. The parent cell in confluent culture closely resembles an endothelial cell in its form and in the structure of its association with adjacent cells. The tumorigenic transformants produced by SV40, murine sarcoma virus, or polyoma viruses are fusiform to pleomorphic and distinctly different from the cell of origin. They show relatively smooth surfaces except for blebs and marginal microvilli. Perhaps most surprising is the similarity they bear to one another. This is made the more singular by the very different form shown by the tumorigenic transformants of spontaneous origin. One of these, S2-4, possesses a thickened rather than the lamellar form of the parent A31 cell and is covered by long microvilli and many spherical blebs. The other, TuT3, more closely resembles the cell of origin but shows extensive ruffling at its margins. All transformants grow without evidence of contact inhibition. The significance of the surface morphologies and the factors influencing cell form are discussed.
Abatement of an Azo Dye on Structured C-Nafion/Fe-Ion Surfaces by Photo-Fenton Reactions Leading to Carboxylate Intermediates with a Remarkable Biodegradability Increase of the Treated Solution

A novel C-Nafton/Fe-ion structured fabric capable of mediating Orange II decomposition in Fenton-immobilized photoassisted reactions is presented. The catalyst preparation requires the right balance between the amount of the Nafion necessary to protect the C-surface and the minimum encapsulation of the Fe-cluster catalytic sites inside the Nafion to allow the photocatalysis to proceed. The C-Nafion/Fe fabric can be used up to pH 10 under light to photocatalyze the disappearance of Orange II in the presence of H2O2. The photocatalysis mediated by the C-Nafion/Fe-ion fabric increased with the applied light intensity and reaction temperature in the reaction needing an activation energy of 9.8 kcal/mol. This indicates that ion- and radical-molecule reactions take place during Orange II disappearance. The build up and decomposition of intermediate iron complexes under light involves the recycling of Fe2+ and was detected by infrared spectroscopy (FTIR). This observation, along with other experimental results, allows us to suggest a surface mechanism for the dye degradation on the C-Nafion/Fe-ion fabrics. The C-Nafion/Fe-ion fabric in the presence of H2O2 under solar simulated light transforms the totally nonbiodegradable Orange II into a biocompatible material with a very high BOD5/COD value. X-ray photoelectron spectroscopy (XPS) and sputtering by Ar+-ions of the upper surface layer of the C-Nafion/Fe-ion fabric allow us to describe the intervention of the photocatalyst down to the molecular level. Most of the Fe clusters examined by transmission electron microscopy (TEM) showed particle sizes close to 4 nm due to their encapsulation into the Gierke cages of the Nafion thin film observed by scanning electron microscopy (SEM) and optical microscopy (OM).
A red palm oil diet can reduce the effects of oxidative stress on rat spermatozoa

Male Wistar rats (n = 54) received daily supplementation of red palm oil (RPO: 0, 2, 4 ml). Subgroups were subsequently injected with saline, cumene hydroperoxide (cHP, 10 μm) or t‐butyl hydroperoxide (tbHP, 20 μm) over a 60‐day period after which animals were sacrificed. Epididymal sperm motility, concentration, reactive oxygen species (ROS), lipid peroxidation and enzymes were measured. Sperm concentration, motility, superoxide dismutase (SOD) concentration, glutathione (GSH) and catalase (CAT) activities were significantly lower, while dichlorofluorescein (DCF) and malondialdehyde (MDA) were higher in sperm of hydroperoxide‐treated animals compared to controls (P < 0.05). DCF and MDA levels were significantly lower, while SOD, CAT and GSH were significantly higher in the sperm of rats supplemented with RPO in combination with hydroperoxide treatment when compared to those receiving hydroperoxide and no RPO supplementation (P < 0.05). Moreover, the DCF, SOD, CAT and GSH levels in the RPO hydroperoxide groups did not differ from control values (P > 0.05). RPO supplementation can successfully attenuate the oxidative stress‐induced sperm damage due to organic hydroperoxide exposure. We therefore propose that a daily intake of RPO supplement to the diet might be helpful in protecting males against the adverse effects of high ROS in sperm function and help preserve fertility.
POYRAZ: CONTEXT‐AWARE SERVICE SELECTION UNDER DECEPTION

The increasing number of service providers on the Web makes it challenging to select a provider for a specific service demand. Each service consumer has different expectations for a given service in different contexts, so the selection process should be consumer‐oriented and context‐dependent. Current approaches for service selection typically have consumers receive ratings of providers from other consumers, where the ratings reflect the consumers' overall subjective opinions. This may be misleading if consumers have different contexts and satisfaction criteria. In this paper, we propose that consumers objectively record their experiences, using an ontology to capture subtle details. This can then be interpreted by consumers according to their own criteria and contexts. We then integrate a method for addressing consumers who lie about their experiences, filtering them out during service selection. We demonstrate the value of our approach through experiments comparing our model with three recent rating‐based service selection models. Our experiments show that using the proposed approach, service consumers can select the service providers for their needs more accurately even if the consumers have different criteria, they change the contexts of their service demands over time, or a significant portion of them are liars.
Dendritic cell-based vaccination in metastatic melanoma patients: Phase II clinical trial

Metastatic and chemoresistant melanoma can be a good target of immunotherapy because it is an intractable cancer with a very poor prognosis. Previously, we tested a dendritic cell (DC)-based phase I vaccine, and confirmed that it was safe. In the present study, we performed a phase II trial of a DC vaccine for metastatic melanoma patients with mainly the HLA-A24 genotype, and investigated the efficacy of the vaccine. Twenty-four patients with metastatic melanoma were enrolled into a phase II study of DC-based immunotherapy. The group included 19 HLA-A24-positive (A*2402) patients and 3 HLA-A2-positive (A*0201) patients. The protocol for DC production was similar to that in the phase I trial. Briefly, a cocktail of 5 melanoma-associated synthetic peptides (gp100, tyrosinase, MAGE-A2, MAGE-A3 and MART-1 or MAGE-A1) restricted to HLA-A2 or A24 and KLH were used for DC pulsing. Finally, DCs were injected subcutaneously (s.c.) into the inguinal region in the dose range of 1–5×107 per shot. The DC ratio (lin-HLA-DR+) of the vaccine was 38.1±13.3% and the frequency of CD83+ DCs was 25.7±20.8%. Other parameters regarding DC processing were not different from phase I. Immune response-related parameters including the ELISPOT assay, DTH reaction to peptide or KLH, DC injection numbers were shown to be related to a good prognosis. The ELISPOT reaction was positive in 75% of the patients vaccinated. The increase of anti-melanoma antigen antibody titer before vaccination was also shown to be a prognosis factor, but that post-vaccination was not. Based on immunohistochemical analysis, CD8 and IL-17 were not involved in the prognosis. Adverse effects of more than grade III were not seen. Overall survival analysis revealed a significant survival prolongation effect in DC-given melanoma patients. These results suggest that peptide cocktail-treated DC vaccines may be a safe and effective therapy against metastatic melanoma in terms of prolongation of overall survival time.
Generating and zeta functions, structure, spectral and analytic properties of the moments of the Minkowski question mark function

In this paper we are interested in moments of Minkowski question mark function ? (x). It appears that, to certain extent, the results are analogous to the results obtained for objects associated with Maass wave forms: period functions, L-series, distributions, spectral properties. These objects can be naturally defined for ? (x) as well. Despite the fact that there are various nice results about the nature of ? (x), these investigations are mainly motivated from the perspective of metric number theory, Hausdorff dimension, singularity and generalizations. In this work it is shown that analytic and spectral properties of various integral transforms of ? (x) do reveal significant information about the question mark function. We prove asymptotic and structural results about the moments, calculate certain integrals involving ? (x), define an associated zeta function, generating functions, Fourier series, and establish intrinsic relations among these objects. At the end of the paper it is shown that certain object associated with ? (x) establish a bridge between realms of imaginary and real quadratic irrationals.
Transoral resection of pharyngeal cancer: Summary of a National Cancer Institute Head and Neck Cancer Steering Committee Clinical Trials Planning Meeting, November 6–7, 2011, Arlington, Virginia

Recent advances now permit resection of many pharyngeal tumors through the open mouth, an approach that can greatly reduce the morbidity of surgical exposure. These transoral techniques are being rapidly adopted by the surgical community and hold considerable promise. On November 6–7, 2011, the National Cancer Institute sponsored a Clinical Trials Planning Meeting to address how to further investigate the use of transoral surgery, both in the good prognosis human papillomavirus (HPV)–initiated oropharyngeal cancers, and in those with HPV‐unrelated disease. The proceedings of this meeting are summarized. © 2012 Wiley Periodicals, Inc. Head Neck, 2012
Who am I?: The influence of affect on the working self-concept

Two experiments investigated the impact of affect on the working self-concept. Following an affect induction, participants completed the Twenty Statements Test (TST) to assess their working self-concepts. Participants in predominantly happy and angry states used more abstract statements to describe themselves than did participants in predominantly sad and fearful states. Evaluations of the statements that participants generated (Experiment 2) demonstrate that these effects are not the result of (1) participants describing positively and negatively valenced information at different levels of abstraction, or (2) valence-based affective priming. Further, half of the participants in Experiment 2 were led to attribute their affect to the manipulation prior to completing the TST. This manipulation eliminated the influence of affect on the working self-concept. Taken together, these results are consistent with theory and research on the informative functions of affect.
Balsalazide is superior to mesalamine in the time to improvement of signs and symptoms of acute mild-to-moderate ulcerative colitis

OBJECTIVE:Balsalazide is a novel azo-bonded 5-aminosalicylic acid treatment for mild-to-moderate ulcerative colitis. The study objective was to compare symptomatic remission rates with balsalazide and mesalamine while controlling for extent of disease and time since diagnosis in patients with active, mild-to-moderate ulcerative colitis.METHODS:A total of 173 patients with sigmoidoscopically verified ulcerative colitis were randomized to 8 wk of double-blind treatment with balsalazide 6.75 g/day or mesalamine 2.4 g/day. Both treatments provided 2.4 g/day of oral 5-aminosalicylic acid. Patients maintained symptom diaries throughout the treatment period.RESULTS:Overall, 46% of balsalazide- and 44% of mesalamine-treated patients achieved symptomatic remission. Higher response rates were noted in newly diagnosed patients with ≤40 cm of disease (68% vs 61%) than in recently relapsed patients with >40 cm of disease (36% vs 25%). The median time to symptomatic remission was 12 days shorter with balsalazide (25 days) than with mesalamine (37 days). Significantly more balsalazide patients showed sigmoidoscopic (p = 0.002), stool frequency (p = 0.006), rectal bleeding (p = 0.006), and physician's global assessment score (p = 0.013) improvement by 14 days than did mesalamine patients. Similar proportions of patients reported adverse events (54% vs 64%), which were most commonly related to the gastrointestinal and central and peripheral nervous systems.CONCLUSIONS:Balsalazide is an effective and safe treatment for mild-to-moderate ulcerative colitis. Improvement of symptoms occurs considerably earlier with balsalazide than with mesalamine.