Miracle-dz/UniFAR-FTUs huggingface dataset:
Comparative Morphology of the Euglenid Pellicle. II. Diversity of Strip Substructure

ABSTRACT. The morphological diversity associated with the strip substructure of the euglenid pellicle was examined, and after identifying characters and states, we outlined hypotheses about their evolution. We have attempted to standardize terms necessary for analytical comparisons of strips by providing a glossary and comparing published synonyms. Most of the substructural diversity found in euglenids is demonstrated with 13 representative taxa. Strips are generally composed of two subcomponents: frames and projections. Frames support the basic shape of strips and many can be described as either S‐shaped, plateau‐shaped, M‐shaped, or A‐shaped. Projections branch laterally from the frames, are usually periodic, and can be described as thread‐like structures, an indented plate, tooth‐like structures, and plate‐like structures. The ancestral state included strips that were few in number, flat, and fused. The strips became S‐shaped and disjoined in the lineage leading to most euglenid taxa. These strips became secondarily flattened and fused in one lineage. In some lineages of phototrophs, the strips became increasingly robust. Two strips of different morphology formed the repeating pellicular unit or doublet in four taxa. These doublets evolved convergently at least three times and may provide insights into developmental patterns of the cytoskeleton.
Circadian rhythms and mood: Opportunities for multi-level analyses in genomics and neuroscience

In the healthy state, both circadian rhythm and mood are stable against perturbations, yet they are capable of adjusting to altered internal cues or ongoing changes in external conditions. The dual demands of stability and flexibility are met by the collective properties of complex neural networks. Disruption of this balance underlies both circadian rhythm abnormality and mood disorders. However, we do not fully understand the network properties that govern the crosstalk between the circadian system and mood regulation. This puzzle reflects a challenge at the center of neurobiology, and its solution requires the successful integration of existing data across all levels of neural organization, from molecules, cells, circuits, network dynamics, to integrated mental function. This essay discusses several open questions confronting the cross-level synthesis, and proposes that circadian regulation, and its role in mood, stands as a uniquely tractable system to study the causal mechanisms of neural adaptation.
Retrieval Dynamics in Self-Terminated Memory Search

Most free-recall experiments employ a paradigm in which participants are given a preset amount of time to retrieve items from a list. While much has been learned using this paradigm, it ignores an important component of many real-world retrieval tasks: the decision to terminate memory search. The present study examines the temporal characteristics underlying memory search by comparing within subjects a standard retrieval paradigm with a finite, preset amount of time (closed interval) to a design that allows participants to terminate memory search on their own (open interval). Calling on the results of several presented simulations, we anticipated that the threshold for number of retrieval failures varied as a function of the nature of the recall paradigm, such that open intervals should result in lower thresholds than closed intervals. Moreover, this effect was expected to manifest in interretrieval times (IRTs). Although retrieval-interval type did not significantly impact the number of items recalled or error rates, IRTs were sensitive to the manipulation. Specifically, the final IRTs in the closed-interval paradigm were longer than those of the open-interval paradigm. This pattern suggests that providing participants with a preset retrieval interval not only masks an important component of the retrieval process (the memory search termination decision), but also alters temporal retrieval dynamics. Task demands may compel people to strategically control aspects of their retrieval by implementing different stopping rules.
Oxidative stress: A cause and therapeutic target of diabetic complications

Oxidative stress is defined as excessive production of reactive oxygen species (ROS) in the presence of diminished anti‐oxidant substances. Increased oxidative stress could be one of the common pathogenic factors of diabetic complications. However, the mechanisms by which hyperglycemia increases oxidative stress are not fully understood. In this review, we focus on the impact of mitochondrial derived ROS (mtROS) on diabetic complications and suggest potential therapeutic approaches to suppress mtROS. It has been shown that hyperglycemia increases ROS production from mitochondrial electron transport chain and normalizing mitochondrial ROS ameliorates major pathways of hyperglycemic damage, such as activation of polyol pathway, activation of PKC and accumulation of advanced glycation end‐products (AGE). Additionally, in subjects with type 2 diabetes, we found a positive correlation between HbA1c and urinary excretion of 8‐hydroxydeoxyguanosine (8‐OHdG), which reflects mitochondrial oxidative damage, and further reported that 8‐OHdG was elevated in subjects with diabetic micro‐ and macro‐ vascular complications. We recently created vascular endothelial cell‐specific manganese superoxide dismutase (MnSOD) transgenic mice, and clarified that overexpression of MnSOD in endothelium could prevent diabetic retinopathy in vivo. Furthermore, we found that metformin and pioglitazone, both of which have the ability to reduce diabetic vascular complications, could ameliorate hyperglycemia‐induced mtROS production by the induction of PPARγ coactivator‐1α (PGC‐1α) and MnSOD and/or activation of adenosine monophosphate (AMP)‐activated protein kinase (AMPK). We also found that metformin and pioglitazone promote mitochondrial biogenesis through the same AMPK–PGC‐1α pathway. Taking these results, mtROS could be the key initiator of and a therapeutic target for diabetic vascular complications. (J Diabetes Invest, doi: 10.1111/j.2040‐1124.2010.00013.x, 2010)
Teamwork improvement in emergency trauma departments

Background: Interprofessional teamwork is considered as the key to improve the quality of patient management in critical settings such as trauma emergency departments, but it is not fully conceptualized in these areas to guide practice. The aim of this article is to explore interprofessional teamwork and its improvement strategies in trauma emergency departments. Materials and Methods: Participants of this qualitative study consisted of 11 nurses and 6 supervisors recruited from the emergency departments of a newly established trauma center using purposive sampling. Data were generated using two focus group and six in-depth individual interviews, and analyzed using qualitative content analysis. Results: Interprofessional teamwork attributes and improvement strategies were emerged in three main themes related to team, context, and goal. These were categorized as the effective presence of team members, role definition in team framework, managerial and physical context, effective patient management, and overcoming competing goals Conclusions: Interprofessional teamwork in trauma emergency departments is explained as interdependence of team, context, and goal; so, it may be improved by strengthening these themes. The findings also provide a basis to evaluate, teach, and do research on teamwork.
Impact of Cyanidin-3-Glucoside on Glycated LDL-Induced NADPH Oxidase Activation, Mitochondrial Dysfunction and Cell Viability in Cultured Vascular Endothelial Cells

Elevated levels of glycated low density lipoprotein (glyLDL) are frequently detected in diabetic patients. Previous studies demonstrated that glyLDL increased the production of reactive oxygen species (ROS), activated NADPH oxidase (NOX) and suppressed mitochondrial electron transport chain (mETC) enzyme activities in vascular endothelial cells (EC). The present study examined the effects of cyanidin-3-glucoside (C3G), a type of anthocyanin abundant in dark-skinned berries, on glyLDL-induced ROS production, NOX activation and mETC enzyme activity in porcine aortic EC (PAEC). Co-treatment of C3G prevented glyLDL-induced upregulation of NOX4 and intracellular superoxide production in EC. C3G normalized glyLDL-induced inhibition on the enzyme activities of mETC Complex I and III, as well as the abundances of NADH dehydrogenase 1 in Complex I and cytochrome b in Complex III in EC. Blocking antibody for the receptor of advanced glycation end products (RAGE) prevented glyLDL-induced changes in NOX and mETC enzymes. Combination of C3G and RAGE antibody did not significantly enhance glyLDL-induced inhibition of NOX or mETC enzymes. C3G reduced glyLDL-induced RAGE expression with the presence of RAGE antibody. C3G prevented prolonged incubation with the glyLDL-induced decrease in cell viability and the imbalance between key regulators for cell viability (cleaved caspase 3 and B cell Lyphoma-2) in EC. The findings suggest that RAGE plays an important role in glyLDL-induced oxidative stress in vascular EC. C3G may prevent glyLDL-induced NOX activation, the impairment of mETC enzymes and cell viability in cultured vascular EC.
GEN05-6: Assessing the Impact of Multiple Active Queue Management Routers

Recent studies have shown that a non-negligible number of packets face multiple congested links on Internet paths. We investigate the impact of using multiple active queue management (AQM) routers on paths that consist of multiple congested links. We present the results of an ns-2 evaluation study of various AQM techniques that, in contrast to previous studies of AQM, uses a complex network topology including up to three congested links, reverse path traffic, and realistic round-trip times. We consider the effects of multiple AQM routers coupled with explicit congestion notification (ECN) on the throughput of long-lived flows and response times of web traffic. We find that, especially for web traffic, performance is improved as the number of AQM routers is increased, but that significant improvements occur with even a single AQM router.
Hippocampic Theta Rhythm

A prominent theta rhythm dominates the EEG of rodents such as rabbits, rats and mice. This rhythmical activity is preponderant in the hippocampus and may become quite widespread; it is usually arousal-related and generated by cholinergic mechanisms. This pattern has been intensively studied by experimental neuroscientists but is rather little known in circles of clinical electroencephalographers. Hippocampic theta rhythm is also found in canines and felines but at a clearly lesser degree and is practically absent in monkeys and humans. An olfactory memory of the macrosmatic rodents helps us understand “the world in which they live,” their EEG patterns being an objective sign of their neuropsychology.
A Model-Based Bayesian Estimation of the Rate of Evolution of VNTR Loci in Mycobacterium tuberculosis

Variable numbers of tandem repeats (VNTR) typing is widely used for studying the bacterial cause of tuberculosis. Knowledge of the rate of mutation of VNTR loci facilitates the study of the evolution and epidemiology of Mycobacterium tuberculosis. Previous studies have applied population genetic models to estimate the mutation rate, leading to estimates varying widely from around to per locus per year. Resolving this issue using more detailed models and statistical methods would lead to improved inference in the molecular epidemiology of tuberculosis. Here, we use a model-based approach that incorporates two alternative forms of a stepwise mutation process for VNTR evolution within an epidemiological model of disease transmission. Using this model in a Bayesian framework we estimate the mutation rate of VNTR in M. tuberculosis from four published data sets of VNTR profiles from Albania, Iran, Morocco and Venezuela. In the first variant, the mutation rate increases linearly with respect to repeat numbers (linear model); in the second, the mutation rate is constant across repeat numbers (constant model). We find that under the constant model, the mean mutation rate per locus is (95% CI: ,)and under the linear model, the mean mutation rate per locus per repeat unit is (95% CI: ,). These new estimates represent a high rate of mutation at VNTR loci compared to previous estimates. To compare the two models we use posterior predictive checks to ascertain which of the two models is better able to reproduce the observed data. From this procedure we find that the linear model performs better than the constant model. The general framework we use allows the possibility of extending the analysis to more complex models in the future.
Anatomical, developmental and physiological aspects of silica in wheat

The major aims of this thesis were to study silica deposits in cereal inflorescences and wheat roots and investigate soluble/deposited silica partitioning and uptake of silica by wheat. The morphology of a particular phytolith (the papilla) from inflorescence bracts of 70 species from Triticum (wheat). Hordeum. Aegi/ops families and Secale cereale was analyzed. Using papilla pit number and/or diameter it is possible to distinguish between Hordeum sp. and Triticum sp. , and between wheats of different ploidy levels. The root growth of T. aestivum was reduced by silica in the nutrient solution (Si+) during the first six days of growth, compared to plants grown in solution not supplemented by silica (Si-), After a further four days Si+ plants had significantly longer roots than Siplants. At the light microscope level, a time course for silicification of the inner tangential wall of the root endodermis of T. aestivum was elucidated over ten days. Very few walls were silicified after 24 hours exposure to Si+ solution, but by day 10 up to 80% of endodermal cells in the basal area of the root were silicified. The percentage of silicified cells increased from the apex to the base of the root. Silica in T. aestivum was measured quantitatively using a molybdate blue detection method. Typically, 99% of the total silica in the seedlings was in the deposited form. The average concentration of soluble silica within the xylem exudate was 3.6 mM. The uptake of silica was affected by the silica concentration and pH of the nutrient solution. By measuring transpirational water loss and the silica content of the plants, it was concluded that silica uptake was active in T. aestivum. Uptake mechanisms were investigated by growing seedlings in nutrient solutions containing 2 mM Si and an inhibitor for 24 hours. The inhibitors used were ATPase inhibitors ( sodium orthovanadate, diethylstilbestrol, erythrosin B) and ionophores (nigericin, FCCP). The data suggests that functional ATPases and a proton gradient are required for silica uptake. Transport into the xylem and uptake at the root surface may be differentially affected by the inhibitors.
Effects of medications on the periodontal tissues in health and disease.

It is now well recognized that the adult population is living longer and retaining their teeth into old age. A major part of this increase in life expectancy is attributed to an expansion in our understanding of disease processes and the subsequent explosion in drug treatments. Some of these drugs will have an impact on the periodontium and its response to bacterial plaque. This paper reviews the various possible interactions between a patient’s medication and their periodontium in both health and disease. The effect of systemic drug therapy on the periodontium can be categorized as follows: • an adverse effect on the periodontal tissues; • affording some degree of protection against periodontal breakdown; • causing an increased risk of periodontal breakdown.
Studies on arsenic toxicity in male rat gonads and its protection by high dietary protein supplementation.

Arsenic was given orally to rats as arsenic tri oxide, 3mg /kg body wt/day in a single dose for 28 consecutive days. This treatment in male Wistar rats caused increase in seminiferous tubular luminal size coupled with reduced accumulation of spermatozoa, and signs of necrotic changes with disarray in cellular organization. Other significant changes were decrease in sperm count, viability and motility (p<0.001). On high protein diet (containing pea 37gm/100 gm of diet and casein 9gm/100gm of diet) supplementation along with same arsenic exposure caused partial restoration of normalcy. All these sperm physiological changes and altered gonadal features, both histomorphometric and histological observations, were found significantly ameliorated. Results of this study propose that high protein diet supplementation may be effective to recovery from the toxic effect of arsenic on male gonad of rat.
Site-Specific Keloid Fibroblasts Alter the Behaviour of Normal Skin and Normal Scar Fibroblasts through Paracrine Signalling

Keloid disease (KD) is an abnormal cutaneous fibroproliferative disorder of unknown aetiopathogenesis. Keloid fibroblasts (KF) are implicated as mediators of elevated extracellular matrix deposition. Aberrant secretory behaviour by KF relative to normal skin fibroblasts (NF) may influence the disease state. To date, no previous reports exist on the ability of site-specific KF to induce fibrotic-like phenotypic changes in NF or normal scar fibroblasts (NS) by paracrine mechanisms. Therefore, the aim of this study was to investigate the influence of conditioned media from site-specific KF on the cellular and molecular behaviour of both NF and NS enabled by paracrine mechanisms. Conditioned media was collected from cultured primary fibroblasts during a proliferative log phase of growth including: NF, NS, peri-lesional keloid fibroblasts (PKF) and intra-lesional keloid fibroblasts (IKF). Conditioned media was used to grow NF, NS, PKF and IKF cells over 240 hrs. Cellular behavior was monitored through real time cell analysis (RTCA), proliferation rates and migration in a scratch wound assay. Fibrosis-associated marker expression was determined at both protein and gene level. PKF conditioned media treatment of both NF and NS elicited enhanced cell proliferation, spreading and viability as measured in real time over 240 hrs versus control conditioned media. Following PKF and IKF media treatments up to 240 hrs, both NF and NS showed significantly elevated proliferation rates (p<0.03) and migration in a scratch wound assay (p<0.04). Concomitant up-regulation of collagen I, fibronectin, α-SMA, PAI-1, TGF-β and CTGF (p<0.03) protein expression were also observed. Corresponding qRT-PCR analysis supported these findings (P<0.03). In all cases, conditioned media from growing marginal PKF elicited the strongest effects. In conclusion, primary NF and NS cells treated with PKF or IKF conditioned media exhibit enhanced expression of fibrosis-associated molecular markers and increased cellular activity as a result of keloid fibroblast-derived paracrine factors.
Histone H3 acetylation is associated with reduced p21WAF1/CIP1 expression by gastric carcinoma

Histone acetylation appears to play an important role in transcriptional regulation. Inactivation of chromatin by histone deacetylation is involved in the transcriptional repression of several tumour suppressor genes, including p21WAF1/CIP1. However, the in vivo status of histone acetylation in human cancers, including gastric carcinoma, is not well understood. This study shows that histone H3 in the p21WAF1/CIP1 promoter region is hypoacetylated and that this hypoacetylation is associated with reduced p21WAF1/CIP1 expression in gastric carcinoma specimens. Chromatin immunoprecipitation assays revealed that histone H3 was hypoacetylated in the p21WAF1/CIP1 promoter and coding regions in 10 (34.5%) and 10 (34.5%) of 29 gastric carcinoma specimens, respectively. Hypoacetylation of histone H4 in the p21WAF1/CIP1 promoter and coding regions was observed in 6 (20.7%) and 16 (55.2%) of 29 gastric carcinoma specimens, respectively. p21WAF1/CIP1 mRNA levels were associated with histone H3 acetylation status in the p21WAF1/CIP1 promoter region (p = 0.047) but not p53 mutation status (p = 0.460). In gastric carcinoma cell lines, expression of p21WAF1/CIP1 protein was induced by trichostatin A, a histone deacetylase inhibitor. This induction was associated with hyperacetylation of histone H3 in the p21WAF1/CIP1 promoter region. Hyperacetylation of histone H4 in the p21WAF1/CIP1 promoter region did not appear to be associated with increased expression. Induction of p21WAF1/CIP1 protein expression was associated with hyperacetylation of histones H3 and H4 in the p21WAF1/CIP1 coding region. Expression of a dominant‐negative mutant of p53 reduced expression of p21WAF1/CIP1 protein. Histone H4 acetylation in both the promoter and coding regions of the p21WAF1/CIP1 gene in cells expressing dominant‐negative p53 was less than half of that in cells expressing wild‐type p53, whereas histone H3 acetylation in both the promoter and coding regions was slightly reduced (by approximately 20%) in cells expressing the dominant‐negative p53. These findings provide evidence that alteration of histone acetylation occurs in human cancer tissue specimens such as those from gastric carcinoma. Copyright © 2004 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.
The Ebb and Flow of Controversial Debates on Social Media

We explore how the polarization around controversial topics evolves on Twitter — over a long period of time (2011 to 2016), and also as a response to major external events that lead to increased related activity. We find that increased activity is typically associated with increased polarization; however, we find no consistent long-term trend in polarization over time among the topics we study.
The association of aspirin use with age-related macular degeneration.

OBJECTIVE To determine whether regular aspirin use is associated with a higher risk for developing age-related macular degeneration (AMD) by using analyzed data from a 15-year prospective cohort. METHODS A prospective analysis was conducted of data from an Australian population-based cohort with 4 examinations during a 15-year period (1992-1994 to 2007-2009). Participants completed a detailed questionnaire at baseline assessing aspirin use, cardiovascular disease status, and AMD risk factors. Age-related macular degeneration was graded side-by-side from retinal photographs taken at each study visit to assess the incidence of neovascular (wet) AMD and geographic atrophy (dry AMD) according to the international AMD classification. RESULTS Of 2389 baseline participants with follow-up data available, 257 individuals (10.8%) were regular aspirin users and 63 of the 2389 developed neovascular AMD. Persons who were regular aspirin users were more likely to have incident neovascular AMD: the 15-year cumulative incidence was 9.3% in users and 3.7% in nonusers. After adjustment for age, sex, smoking, history of cardiovascular disease, systolic blood pressure, and body mass index, persons who were regular aspirin users had a higher risk of developing neovascular AMD (odds ratio [OR], 2.46; 95% CI, 1.25-4.83). The association showed a dose-response effect (multivariate-adjusted P = .01 for trend). Aspirin use was not associated with the incidence of geographic atrophy (multivariate-adjusted OR, 0.99; 95% CI, 0.59-1.65). CONCLUSION Regular aspirin use is associated with increased risk of incident neovascular AMD, independent of a history of cardiovascular disease and smoking.