Miracle-dz/UniFAR-FTUs huggingface dataset:
Predicted Distribution of Major Malaria Vectors Belonging to the Anopheles dirus Complex in Asia: Ecological Niche and Environmental Influences

Methods derived from ecological niche modeling allow to define species distribution based on presence-only data. This is particularly useful to develop models from literature records such as available for the Anopheles dirus complex, a major group of malaria mosquito vectors in Asia. This research defines an innovative modeling design based on presence-only model and hierarchical framework to define the distribution of the complex and attempt to delineate sibling species distribution and environmental preferences. At coarse resolution, the potential distribution was defined using slow changing abiotic factors such as topography and climate representative for the timescale covered by literature records of the species. The distribution area was then refined in a second step using a mask of current suitable land cover. Distribution area and ecological niche were compared between species and environmental factors tested for relevance. Alternatively, extreme values at occurrence points were used to delimit environmental envelopes. The spatial distribution for the complex was broadly consistent with its known distribution and influencing factors included temperature and rainfall. If maps developed from environmental envelopes gave similar results to modeling when the number of sites was high, the results were less similar for species with low number of recorded presences. Using presence-only models and hierarchical framework this study not only predicts the distribution of a major malaria vector, but also improved ecological modeling analysis design and proposed final products better adapted to malaria control decision makers. The resulting maps can help prioritizing areas which need further investigation and help simulate distribution under changing conditions such as climate change or reforestation. The hierarchical framework results in two products one abiotic based model describes the potential maximal distribution and remains valid for decades and the other including a biotic mask easy to update with frequently available information gives current species distribution.
The Complete Mitochondrial Genome of the Asiatic Cavity-Nesting Honeybee Apis cerana (Hymenoptera: Apidae)

In the present study, we determined the complete mitochondrial DNA (mtDNA) sequence of Apis cerana, the Asiatic cavity-nesting honeybee. We present here an analysis of features of its gene content and genome organization in comparison with Apis mellifera to assess the variation within the genus Apis and among main groups of Hymenoptera. The size of the entire mt genome of A. cerana is 15,895 bp, containing 2 ribosomal RNA genes, 13 protein-coding genes, 22 transfer RNA (tRNA) genes and one control region. These genes are transcribed from both strands and have a nucleotide composition high in A and T. The contents of A+T of the complete genomes are 83.96% for A. cerana. The AT bias had a significant effect on both the codon usage pattern and amino acid composition of proteins. There are a total of 3672 codons in all 13 protein-coding genes, excluding termination codons. The most frequently used amino acid is Leu (15.52%), followed by Ile (12.85%), Phe (10.10%), Ser (9.15%) and Met (8.96%). Intergenic regions in the mt genome of A. cerana are 705 bp in total. The order and orientation of the gene arrangement pattern is identical to that of A. mellifera, except for the position of the tRNA-Ser(AGN) gene. Phylogenetic analyses using concatenated amino acid sequences of 13 protein-coding genes, with three different computational algorithms (NJ, MP and ML), all revealed two distinct groups with high statistical support, indicating that A. cerana and A. mellifera are two separate species, consistent with results of previous morphological and molecular studies. The complete mtDNA sequence of A. cerana provides additional genetic markers for studying population genetics, systematics and phylogeographics of honeybees.
Stress intensity factors for three‐dimensional weld toe cracks using weld toe magnification factors

In welded components, particularly those with complex geometrical shapes, evaluating stress intensity factors is a difficult task. To effectively calculate the stress intensity factors, a weld toe magnification factor is introduced that can be derived from data obtained in a parametric study performed by finite element method (FEM). Although solutions for the weld toe magnification factor have been presented, these are applicable only to non-load-carrying cruciform or T-butt joints, due possibly to the requirement of very complicated calculations. In the majority of cases for various welded joints, the currently used weld toe magnification factors do not adequately describe the behaviour of weld toe cracks. In this study, the weld toe magnification factor solutions for the three types of welded joints such as cruciform, cover plate and longitudinal stiffener joints were provided through a parametric study using three-dimensional finite elements. The solutions were formed with exponents and fractions that have polynomial functions in terms of a/c and a/t – that is, crack depths normalised by corresponding half crack lengths and specimen thickness. The proposed weld toe magnification factors were applied to evaluate the fatigue crack propagation life considering the propagation mechanisms of multiple-surface cracks for all welded joints. It showed good agreement within a deviation factor of two between the experimental and calculated results for the fatigue crack propagation life.
Controlling Aedes albopictus and Culex pipiens pallens using silver nanoparticles synthesized from aqueous extract of Cassia fistula fruit pulp and its mode of action

Abstract Mosquitoes act as key vector for transmission of devastating parasites and pathogens which affect millions of people globally. In this research, the green synthesis of silver nanoparticles of Cassia fistula fruit pulp as an innovative and operative tool against vector mosquitoes is presented. Silver nanoparticles were characterized by a series of techniques including Fourier transform infrared spectroscopy, Transmission Electron Microscope and confirmed by Scanning Electron Microscope, UV-Vis spectrophotometry and X-ray diffraction. Silver nanoparticles were highly effective against the larvae (I–IV instar) and pupae of Aedes albopictus and Culex pipiens pallens after 24, 48 and 72 h of treatment. Ae. albopictus had LC50 values ranging from 8.3 mg/L (I instar) to 17.3 mg/L (pupae) and LC50 ranging from 1.1 mg/L (I instar) to 19.0 mg/L (pupae) against Cx. pipiens pallens. The systemic effect of AgNPs was further assessed in the fourth instar larvae of Ae. albopictus and Cx. pipiens pallens by measuring the levels of total proteins and activity of two important marker enzymes: Acetylcholinesterase and α- and β-carboxylesterase. Overall, the findings of the study suggest that the use of Cassia fistula-fruit pulp extract mediated synthesis of silver nanoparticles can be used for controlling vector mosquitoes. This is the first report on the mosquito larvicidal and pupicidal activity of AgNPs synthesized by Cassia fistula fruit pulp and its possible mechanism of action.
Chiral Thioxanthones as Modulators of P-glycoprotein: Synthesis and Enantioselectivity Studies

Recently, thioxanthone derivatives were found to protect cells against toxic P-glycoprotein (P-gp) substrates, acting as potent inducers/activators of this efflux pump. The study of new P-gp chiral modulators produced from thioxanthone derivatives could clarify the enantioselectivity of this ABC transporter towards this new class of modulators. The aim of this study was to evaluate the P-gp modulatory ability of four enantiomeric pairs of new synthesized chiral aminated thioxanthones (ATxs) 1–8, studying the influence of the stereochemistry on P-gp induction/ activation in cultured Caco-2 cells. The data displayed that all the tested compounds (at 20 μM) significantly decreased the intracellular accumulation of a P-gp fluorescent substrate (rhodamine 123) when incubated simultaneously for 60 min, demonstrating an increased activity of the efflux, when compared to control cells. Additionally, all of them except ATx 3 (+), caused similar results when the accumulation of the P-gp fluorescent substrate was evaluated after pre-incubating cells with the test compounds for 24 h, significantly reducing the rhodamine 123 intracellular accumulation as a result of a significant increase in P-gp activity. However, ATx 2 (−) was the only derivative that, after 24 h of incubation, significantly increased P-gp expression. These results demonstrated a significantly increased P-gp activity, even without an increase in P-gp expression. Therefore, ATxs 1–8 were shown to behave as P-gp activators. Furthermore, no significant differences were detected in the activity of the protein when comparing the enantiomeric pairs. Nevertheless, ATx 2 (−) modulates P-gp expression differently from its enantiomer, ATx 1 (+). These results disclosed new activators and inducers of P-gp and highlight the existence of enantioselectivity in the induction mechanism.
A geometrically controlled rigidity transition in a model for confluent 3D tissues

The origin of rigidity in disordered materials is an outstanding open problem in statistical physics. Previously, a class of 2D cellular models has been shown to undergo a rigidity transition controlled by a mechanical parameter that specifies cell shapes. Here, we generalize this model to 3D and find a rigidity transition that is similarly controlled by the preferred surface area S0: the model is solid-like below a dimensionless surface area of s 0 ≡ S 0 / V ¯ 2 / 3 ≈ 5.413 with V ¯ being the average cell volume, and fluid-like above this value. We demonstrate that, unlike jamming in soft spheres, residual stresses are necessary to create rigidity. These stresses occur precisely when cells are unable to obtain their desired geometry, and we conjecture that there is a well-defined minimal surface area possible for disordered cellular structures. We show that the behavior of this minimal surface induces a linear scaling of the shear modulus with the control parameter at the transition point, which is different from the scaling observed in particulate matter. The existence of such a minimal surface may be relevant for biological tissues and foams, and helps explain why cell shapes are a good structural order parameter for rigidity transitions in biological tissues.
Towards an Operational SAR-Based Rice Monitoring System in Asia: Examples from 13 Demonstration Sites across Asia in the RIICE Project

Rice is the most important food security crop in Asia. Information on its seasonal extent forms part of the national accounting of many Asian countries. Synthetic Aperture Radar (SAR) imagery is highly suitable for detecting lowland rice, especially in tropical and subtropical regions, where pervasive cloud cover in the rainy seasons precludes the use of optical imagery. Here, we present a simple, robust, rule-based classification for mapping rice area with regularly acquired, multi-temporal, X-band, HH-polarized SAR imagery and site-specific parameters for classification. The rules for rice detection are based on the well-studied temporal signature of rice from SAR backscatter and its relationship with crop stages. We also present a procedure for estimating the parameters based on “temporal feature descriptors” that concisely characterize the key information in the rice signatures in monitored field locations within each site. We demonstrate the robustness of the approach on a very large dataset. A total of 127 images across 13 footprints in six countries in Asia were obtained between October 2012, and April 2014, covering 4.78 m ha. More than 1900 in-season site visits were conducted across 228 monitoring locations in the footprints for classification purposes, and more than 1300 field observations were made for accuracy assessment. Some 1.6 m ha of rice were mapped with classification accuracies from 85% to 95% based on the parameters that were closely related to the observed temporal feature descriptors derived for each site. The 13 sites capture much of the diversity in water management, crop establishment and maturity in South and Southeast Asia. The study demonstrates the feasibility of rice detection at the national scale using multi-temporal SAR imagery with robust classification methods and parameters that are based on the knowledge of the temporal dynamics of the rice crop. We highlight the need for the development of an open-access library of temporal signatures, further investigation into temporal feature descriptors and better ancillary data to reduce the risk of misclassification with surfaces that have temporal backscatter dynamics similar to those of rice. We conclude with observations on the need to define appropriate SAR acquisition plans to support policies and decisions related to food security.
Effect of Visitor Perspective on Adoption Decisions at One Animal Shelter

ABSTRACT This study investigated the visitor experience at one urban animal shelter. While several previous studies have examined the reasons particular nonhuman animals are chosen by adopters, few have investigated the possible reasons one would visit a shelter and leave without adopting. Over a two-month period, 158 visitors were surveyed after they were finished touring the shelter. One quarter of those exiting the shelter had adopted a pet (companion animal) compared to 11% who had been planning to adopt that day but did not. Almost 20% of survey respondents were just visiting with no plans for pet adoption either that day or in the near future. Being affectionate and friendly were important characteristics sought by potential adopters, although non-adopters reported more frequently than adopters that the animal’s reaction to them was important. Shelters should work toward increasing chances for pets to connect and interact with visitors and focus on educating and retaining the interest of those who are not quite ready for a new pet.
Current Guidelines Have Limited Applicability to Patients with Comorbid Conditions: A Systematic Analysis of Evidence-Based Guidelines

Background Guidelines traditionally focus on the diagnosis and treatment of single diseases. As almost half of the patients with a chronic disease have more than one disease, the applicability of guidelines may be limited. The aim of this study was to assess the extent that guidelines address comorbidity and to assess the supporting evidence of recommendations related to comorbidity. Methodology/Principal Findings We conducted a systematic analysis of evidence-based guidelines focusing on four highly prevalent chronic conditions with a high impact on quality of life: chronic obstructive pulmonary disease, depressive disorder, diabetes mellitus type 2, and osteoarthritis. Data were abstracted from each guideline on the extent that comorbidity was addressed (general comments, specific recommendations), the type of comorbidity discussed (concordant, discordant), and the supporting evidence of the comorbidity-related recommendations (level of evidence, translation of evidence). Of the 20 guidelines, 17 (85%) addressed the issue of comorbidity and 14 (70%) provided specific recommendations on comorbidity. In general, the guidelines included few recommendations on patients with comorbidity (mean 3 recommendations per guideline, range 0 to 26). Of the 59 comorbidity-related recommendations provided, 46 (78%) addressed concordant comorbidities, 8 (14%) discordant comorbidities, and for 5 (8%) the type of comorbidity was not specified. The strength of the supporting evidence was moderate for 25% (15/59) and low for 37% (22/59) of the recommendations. In addition, for 73% (43/59) of the recommendations the evidence was not adequately translated into the guidelines. Conclusions/Significance Our study showed that the applicability of current evidence-based guidelines to patients with comorbid conditions is limited. Most guidelines do not provide explicit guidance on treatment of patients with comorbidity, particularly for discordant combinations. Guidelines should be more explicit about the applicability of their recommendations to patients with comorbidity. Future clinical trials should also include patients with the most prevalent combinations of chronic conditions.
Hop-by-Hop Routing in Wireless Mesh Networks with Bandwidth Guarantees

Wireless Mesh Network (WMN) has become an important edge network to provide Internet access to remote areas and wireless connections in a metropolitan scale. In this paper, we study the problem of identifying the maximum available bandwidth path, a fundamental issue in supporting quality-of-service in WMNs. Due to interference among links, bandwidth, a well-known bottleneck metric in wired networks, is neither concave nor additive in wireless networks. We propose a new path weight which captures the available path bandwidth information. We formally prove that our hop-by-hop routing protocol based on the new path weight satisfies the consistency and loop-freeness requirements. The consistency property guarantees that each node makes a proper packet forwarding decision, so that a data packet does traverse over the intended path. Our extensive simulation experiments also show that our proposed path weight outperforms existing path metrics in identifying high-throughput paths.
Acanthaster planci Outbreak: Decline in Coral Health, Coral Size Structure Modification and Consequences for Obligate Decapod Assemblages

Although benthic motile invertebrate communities encompass the vast majority of coral reef diversity, their response to habitat modification has been poorly studied. A variety of benthic species, particularly decapods, provide benefits to their coral host enabling them to cope with environmental stressors, and as a result benefit the overall diversity of coral-associated species. However, little is known about how invertebrate assemblages associated with corals will be affected by global perturbations, (either directly or indirectly via their coral host) or their consequences for ecosystem resilience. Analysis of a ten year dataset reveals that the greatest perturbation at Moorea over this time was an outbreak of the corallivorous sea star Acanthaster planci from 2006 to 2009 impacting habitat health, availability and size structure of Pocillopora spp. populations and highlights a positive relationship between coral head size and survival. We then present the results of a mensurative study in 2009 conducted at the end of the perturbation (A. planci outbreak) describing how coral-decapod communities change with percent coral mortality for a selected coral species, Pocillopora eydouxi. The loss of coral tissue as a consequence of A. planci consumption led to an increase in rarefied total species diversity, but caused drastic modifications in community composition driven by a shift from coral obligate to non-obligate decapod species. Our study highlights that larger corals left with live tissue in 2009, formed a restricted habitat where coral obligate decapods, including mutualists, could subsist. We conclude that the size structure of Pocillopora populations at the time of an A. planci outbreak may greatly condition the magnitude of coral mortality as well as the persistence of local populations of obligate decapods.
An extended retinotopic map of mouse cortex

Visual perception and behavior are mediated by cortical areas that have been distinguished using architectonic and retinotopic criteria. We employed fluorescence imaging and GCaMP6 reporter mice to generate retinotopic maps, revealing additional regions of retinotopic organization that extend into barrel and retrosplenial cortices. Aligning retinotopic maps to architectonic borders, we found a mismatch in border location, indicating that architectonic borders are not aligned with the retinotopic transition at the vertical meridian. We also assessed the representation of visual space within each region, finding that four visual areas bordering V1 (LM, P, PM and RL) display complementary representations, with overlap primarily at the central hemifield. Our results extend our understanding of the organization of mouse cortex to include up to 16 distinct retinotopically organized regions. DOI: http://dx.doi. org/10.7554/eLife.18372. 001
Thermally assisted coating of PVA for hydrophilic surface modification of PMMA microchannel for oil in water emulsion

Microfluidics plays a significant role in the field of engineering and modern sciences. It has various applications especially in bio-medical science, reaction engineering to improve the reaction rates for better yield, electro chromatographic separations, chemical synthesis and drug screening. A surface modification method for bonded poly methyl methacrylate (PMMA) micro channels is presented in this study. Coating was performed from aqueous solution of polyvinyl alcohol (PVA) along with subsequent heat treatment of PMMA micro channels. This surface modification improves hydrophilic wettability of channels. It permits the generation of oil-in-water (O/W) emulsion in PMMA microchip. To evaluate the PVA coating in microchannels of bonded microfluidic device, polymer hydrophilicity with aging time and surface properties were studied. Surface hydrophilicity and chemistry was evaluated by measuring contact angle on PMMA substrate and performing energy dispersive x-ray spectroscopy (EDX) respectively. Also, the stability of the PVA coated hydrophilic surfaces was confirmed by successfully generating oil in water emulsion.
Male-Specific Transfer and Fine Scale Spatial Differences of Newly Identified Cuticular Hydrocarbons and Triacylglycerides in a Drosophila Species Pair

We analyzed epicuticular hydrocarbon variation in geographically isolated populations of D. mojavensis cultured on different rearing substrates and a sibling species, D. arizonae, with ultraviolet laser desorption/ionization mass spectrometry (UV-LDI MS). Different body parts, i.e. legs, proboscis, and abdomens, of both species showed qualitatively similar hydrocarbon profiles consisting mainly of long-chain monoenes, dienes, trienes, and tetraenes. However, D. arizonae had higher amounts of most hydrocarbons than D. mojavensis and females of both species exhibited greater hydrocarbon amounts than males. Hydrocarbon profiles of D. mojavensis populations were significantly influenced by sex and rearing substrates, and differed between body parts. Lab food–reared flies had lower amounts of most hydrocarbons than flies reared on fermenting cactus substrates. We discovered 48 male- and species-specific hydrocarbons ranging in size from C22 to C50 in the male anogenital region of both species, most not described before. These included several oxygen-containing hydrocarbons in addition to high intensity signals corresponding to putative triacylglycerides, amounts of which were influenced by larval rearing substrates. Some of these compounds were transferred to female cuticles in high amounts during copulation. This is the first study showing that triacylglycerides may be a separate class of courtship-related signaling molecules in drosophilids. This study also extends the kind and number of epicuticular hydrocarbons in these species and emphasizes the role of larval ecology in influencing amounts of these compounds, many of which mediate courtship success within and between species.