Miracle-dz/UniFAR-FTUs huggingface dataset:
Change in EMG with skin friction at different frequencies during elbow flexion

Modulation of muscle activation in superficial and deeper regions may be induced by tactile stimulation. The purpose of this study was to examine changes in muscle activation with skin friction. Subjects performed an isometric elbow flexion at 30% maximal voluntary cotraction (MVC) with skin friction at different frequencies (0.5–2.7 Hz). Surface electromyography (S-EMG) and intramuscular EMG were obtained from the elbow flexor muscles (BBS: short head of biceps brachii, BBL: long head of biceps brachii, BRA: brachialis). S-EMG activity decreased at a higher frequency of 2.7 Hz and increased linearly with an increase in skin friction frequency (0.5–2.7 Hz) in BBS. A decrease in high-threshold motor unit (HT-MU) firing rate in superficial regions and an increase in low-threshold motor unit (LT-MU) firing rate in deeper regions were observed with skin friction (2.7 Hz) in BBS. The actions of inhibitory interneurons may be influenced by cutaneous afferent input with skin friction. Muscle activation of BBS depended on the intensity of the stimulus. Skin friction over BBS results in an inhibitory response in superficial regions of BBS, most likely due to the increase in firing rate of low-threshold cutaneous mechanoreceptors.
On the existence of spurious modes in Battle-Lemarie based MRTD

A distinction between the effects of inaccuracy of the Battle-Lemarie wavelet based multiresolution time domain (W-MRTD) scheme for high spatial frequencies and spurious modes is drawn and explained. Investigating the performance of the scheme under various excitation methods, it is concluded that what was described earlier in the literature as a spurious mode effect actually corresponds to alias frequencies stemming from the excitation of higher order modes by the wavelets, given that the latter are spectrally supported at higher wavenumbers.
Capital structure and corporate performance in late Imperial Russia

This article investigates the financing of corporations in industrialization’s early stages by examining new balance sheet data describing all Imperial Russian corporations in 1914. We emphasize differences between two Russian corporation types: share partnerships and A-corporations. Share partnerships issued greater dividends, were less likely to issue bonds, and had larger accounts payable. We find that capital structures varied with age, size, and sector according to modern corporate finance theories and that scaled profits did not demonstrate differential market power across corporation types. Thus, Russian corporations exhibited considerable financial flexibility, and reducing incorporation costs could have benefited the Imperial Russian economy.
Effect of hoof orientation and ballast on acceleration and vibration in the hoof and distal forelimb following simulated impacts ex vivo.

REASONS FOR PERFORMING STUDY We wished to add to the existing baseline data on impact loading of the distal limb as a precursor to assessing the potential role of impact in injury and joint disease. OBJECTIVES To examine the effect of 3 hoof-strike conditions (toe first, flat and heel first) and 2 specimen masses (with and without a ballast of ∼2% body mass) on impact deceleration and vibration frequencies and energies at the hoof, first phalanx and third metacarpal. STUDY DESIGN Biomechanical experiments in cadaver material. METHODS Eight cadaver limbs were subjected to randomised, repeated controlled trials, in which the hoof was struck by a pendulum impact-testing machine (impact velocity, 3.55 m/s) in the 3 strike and 2 mass conditions. Data from triaxial accelerometers on the hoof, first phalanx and third metacarpal quantified, for all trials, the peak impact acceleration, frequencies in the first 6.4 ms following impact, the frequency with the most energy, 95% of the total energy and the frequency at 95% cumulative energy. The effects of the strike and mass conditions on each variable were statistically tested using repeated-measures ANOVA (α = 0.05). RESULTS Signal energy reaching the third metacarpal was 6-31% of that at the hoof. A heel-first strike produced the largest peak accelerations and highest frequencies among all strike conditions, and changing the mass had no effect regardless of strike condition. CONCLUSIONS Large accelerations that occur upon impact of the hoof with the ground are attenuated by the distal structures of the equine limb, but still carry considerable energy within the signal that could be damaging to tissue and are dependent on hoof-strike condition but not ballast. Our results suggest that impact loading on the hoof could be a factor in contributing to bone injury and joint disease in the distal limb.
Why so complicated? Simple term filtering and weighting for location-based bug report assignment recommendation

Large software development projects receive many bug reports and each of these reports needs to be triaged. An important step in the triage process is the assignment of the report to a developer. Most previous efforts towards improving bug report assignment have focused on using an activity-based approach. We address some of the limitations of activity-based approaches by proposing a two-phased location-based approach where bug report assignment recommendations are based on the predicted location of the bug. The proposed approach utilizes a noun extraction process on several information sources to determine bug location information and a simple term weighting scheme to provide a bug report assignment recommendation. We found that by using a location-based approach, we achieved an accuracy of 89.41% and 59.76% when recommending five developers for the Eclipse and Mozilla projects, respectively.
Development and evaluation of antimicrobial herbal formulations containing the methanolic extract of Cassia alata for skin diseases

Objective: To explore the antifungal and antibacterial activity of methanolic extract of Cassia alata (C. alata) and its formulations for skin diseases. Methods: Sundried leaves of C. alata Linn. were extracted using different solvents as follows: water, methanol, ethanol, n-hexane and lastly with acetone. The crude extract was investigated for antifungal and antibacterial activities using disc diffusion method against Coccidioides immitis, Exophilia dermatitidis, Aspergillus fumigatus and human pathogenic fungi Candida albicans and a group of bacteria, Staphylococcus aureus. The minimum inhibitory concentrations of the methanolic extract were determined using the agar dilution method. Herbal ointments were prepared by incorporating the methanol extract of C. alata into emulsifying ointment to obtain different concentrations of 25, 50, 100, and 200 mg/mL. Results: The methanol extraction gave the maximum extraction. The formulated C. alata ointment when compared with standard drugs nystatin and streptomycin in vitro was more effective against the microorganisms. Conclusions: This study showed that C. alata had antifungal and antibacterial activities when formulated as ointment for topical use and could, therefore, explained its folkloric use for the treatment of dermatitis.
Simulating posterior parietal damage in a biologically plausible framework: Neuropsychological tests of the search over time and space model

The search over time and space (sSoTS) model attempts to simulate both the spatial and the temporal aspects of human visual search using spiking level neurons, which incorporate some biologically plausible aspects of neuronal firing. The model contains pools of units that (a) code basic features of objects, presumed to reside in the ventral visual stream, and (b) respond in a feature-independent way to stimulation at their location, presumed to operate in the posterior parietal cortex. We examined the effects of selective lesioning neurons responding to one side of the location map. Unilateral damage introduced spatial biases into selection that affected conjunction more than single-feature search. In addition, there was an impaired ability to segment stimuli over time as well as space (e.g., in preview search). These results match previously reported data on patients with posterior parietal lesions. In addition we show that spatial biases in selection increase under conditions in which there is decreased activity from excitatory neurotransmitters, mimicking effects of reduced arousal. Further simulations explored the effects of time and of visual grouping on extinction, generating predictions that were then tested empirically. The model provides a framework for linking behavioural data from patients with neural-level determinants of visual attention.
Differential RNA elongation controls the variant surface glycoprotein gene expression sites of Trypanosoma brucei

The protozoan parasite Trypanosoma brucei develops antigenic variation to escape the immune response of its host. To this end, the trypanosome genome contains multiple telomeric expression sites competent for transcription of variant surface glycoprotein genes, but as a rule only a single antigen is expressed at any time. We used reverse transcription‐PCR (RT‐PCR) to analyse transcription of different segments of the expression sites in different variant clones of two independent strains of T. brucei. The results indicated that RNA polymerase is installed and active at the beginning of many, if not all, expression sites simultaneously, but that a progressive arrest of RNA elongation occurs in all but one site. This defect is linked to inefficient RNA processing and RNA release from the nucleus. Therefore, functional transcription in the active site appears to depend on the selective recruitment of a RNA elongation/processing machinery.
Investigation of the phase morphology of dynamically vulcanized PVC/NBR blends using atomic force microscopy

Dynamic vulcanization is a mixing process employed in the melt state of elastomers with thermoplastics. This process may result in the formation of thermoplastic vulcanized (TPV) materials with improved properties such as mechanical strength, Young's modulus, hardness, and abrasion fatigue. In this study, a vulcanized thermoplastic was obtained by the dynamic vulcanization of poly(vinyl chloride)/acrylonitrile butadiene rubber (PVC/NBR) blends using a curative system based on sulfur (S)/tetramethylthiuram disulfide (TMTD) and mercaptobenzothiazyl disulfide (MBTS). The formation of crosslinks was characterized by differential scanning calorimetry (DSC) and Fourier transform infrared (FTIR) spectroscopy. The mechanical properties were analyzed by tensile tests and the phase morphology was investigated using atomic force microscopy (AFM) operating in the tapping mode-AFM. The phase images of the dynamically vulcanized blends showed an elongated morphology, which can be associated to the formation of crosslinks that give the material its excellent mechanical properties. © 2010 Wiley Periodicals, Inc. J Appl Polym Sci, 2010
Odd Sound Processing in the Sleeping Brain

How does the sleeping brain process external stimuli, and in particular, up to which extent does the sleeping brain detect and process modifications in its sensory environment? In order to address this issue, we investigated brain reactivity to simple auditory stimulations during sleep in young healthy subjects. Electroencephalogram signal was acquired continuously during a whole night of sleep while a classical oddball paradigm with duration deviance was applied. In all sleep stages, except Sleep Stage 4, a mismatch negativity (MMN) was unquestionably found in response to deviant tones, revealing for the first time preserved sensory memory processing during almost the whole night. Surprisingly, during Sleep Stage 2 and paradoxical sleep, both P3a-like and P3b-like components were identified after the MMN, whereas a P3a alone followed the MMN in wakefulness and in Sleep Stage 1. This totally new result suggests elaborated processing of external stimulation during sleep. We propose that the P3b-like response could be associated to an active processing of the deviant tone in the dream's consciousness.
Serum Magnesium and the Risk of Death From Coronary Heart Disease and Sudden Cardiac Death

Background Low serum magnesium has been implicated in cardiovascular mortality, but results are conflicting and the pathway is unclear. We studied the association of serum magnesium with coronary heart disease (CHD) mortality and sudden cardiac death (SCD) within the prospective population‐based Rotterdam Study, with adjudicated end points and long‐term follow‐up. Methods and Results Nine‐thousand eight‐hundred and twenty participants (mean age 65.1 years, 56.8% female) were included with a median follow‐up of 8.7 years. We used multivariable Cox proportional hazard models and found that a 0.1 mmol/L increase in serum magnesium level was associated with a lower risk for CHD mortality (hazard ratio: 0.82, 95% CI 0.70–0.96). Furthermore, we divided serum magnesium in quartiles, with the second and third quartile combined as reference group (0.81–0.88 mmol/L). Low serum magnesium (≤0.80 mmol/L) was associated with an increased risk of CHD mortality (N=431, hazard ratio: 1.36, 95% CI 1.09–1.69) and SCD (N=217, hazard ratio: 1.54, 95% CI 1.12–2.11). Low serum magnesium was associated with accelerated subclinical atherosclerosis (expressed as increased carotid intima‐media thickness: +0.013 mm, 95% CI 0.005–0.020) and increased QT‐interval, mainly through an effect on heart rate (RR‐interval: −7.1 ms, 95% CI −13.5 to −0.8). Additional adjustments for carotid intima‐media thickness and heart rate did not change the associations with CHD mortality and SCD. Conclusions Low serum magnesium is associated with an increased risk of CHD mortality and SCD. Although low magnesium was associated with both carotid intima‐media thickness and heart rate, this did not explain the relationship between serum magnesium and CHD mortality or SCD. Future studies should focus on why magnesium associates with CHD mortality and SCD and whether intervention reduces these risks.
Mutations in the NB-ARC Domain of I-2 That Impair ATP Hydrolysis Cause Autoactivation1[OA]

Resistance (R) proteins in plants confer specificity to the innate immune system. Most R proteins have a centrally located NB-ARC (nucleotide-binding adaptor shared by APAF-1, R proteins, and CED-4) domain. For two tomato (Lycopersicon esculentum) R proteins, I-2 and Mi-1, we have previously shown that this domain acts as an ATPase module that can hydrolyze ATP in vitro. To investigate the role of nucleotide binding and hydrolysis for the function of I-2 in planta, specific mutations were introduced in conserved motifs of the NB-ARC domain. Two mutations resulted in autoactivating proteins that induce a pathogen-independent hypersensitive response upon expression in planta. These mutant forms of I-2 were found to be impaired in ATP hydrolysis, but not in ATP binding, suggesting that the ATP- rather than the ADP-bound state of I-2 is the active form that triggers defense signaling. In addition, upon ADP binding, the protein displayed an increased affinity for ADP suggestive of a change of conformation. Based on these data, we propose that the NB-ARC domain of I-2, and likely of related R proteins, functions as a molecular switch whose state (on/off) depends on the nucleotide bound (ATP/ADP).
Optical Properties of Nanocomposite Thin-Films

This paper aims at developing numerically validated models for predicting the through-plane effective index of refraction and absorption index of nanocomposite thin-films. First, models for the effective optical properties are derived from previously reported analysis applying the volume averaging theory (VAT) to the Maxwell's equations. The transmittance and reflectance of nanoporous thin-films are computed by solving the Maxwell's equations and the associated boundary conditions at all interfaces using finite element methods. The effective optical properties of the films are retrieved by minimizing the root mean square of the relative errors between the computed and theoretical transmittance and reflectance. Nanoporous thin-films made of SiO2 and TiO2 consisting of cylindrical nanopores and nanowires are investigated for different diameters and various porosities. Similarly, electromagnetic wave transport through dielectric medium with embedded metallic nanowires are simulated. Numerical results are compared with predictions from widely used effective property models including (1) Maxwell-Garnett Theory, (2) Bruggeman effective medium approximation, (3) parallel, (4) series, (5) Lorentz-Lorenz, and (6) VAT models. Very good agreement is found with the VAT model for both the effective index of refraction and absorption index. Finally, the effect of volume fraction on the effective complex index of refraction predicted by the VAT model is discussed. For certain values of wavelengths and volume fractions, the effective index of refraction or absorption index of the composite material can be smaller than that of both the continuous and dispersed phases. These results indicate guidelines for designing nanocomposite optical materials.Copyright © 2006 by ASME
PPAR-Alpha Agonist Fenofibrate Induces Renal CYP Enzymes and Reduces Blood Pressure and Glomerular Hypertrophy in Zucker Diabetic Fatty Rats

We have previously shown that fenofibrate, a peroxisome proliferator-activated receptor-α activator, increases renal cytochrome P450 (CYP)-derived eicosanoids and improves endothelial function in pre-diabetic obese rats. The present study was designed to explore the efficacy of fenofibrate on blood pressure and renal injury in the advanced stage of type-2 diabetes. 26-week-old male Zucker diabetic fatty rats (ZDF) were fed fenofibrate (100 mg/kg/day) for 6 weeks. Chronic treatment with fenofibrate normalized systolic blood pressure and reduced glomerular size by 19% in diabetic rats. Western blot and fluorescent immunostaining revealed that the over-expression of collagen type IV and α-smooth muscle actin was significantly attenuated in the kidney of fenofibrate-treated ZDF (F-ZDF) rats. In addition, fenofibrate administration dramatically decreased the cyclin D1 protein level in the kidney of diabetic rats. In contrast, renal CYP2C23 and CYP4A proteins were significantly increased in F-ZDF rats. These fenofibrate effects were observed in the absence of significant changes in glucose, insulin or lipid levels. Taken together, our results demonstrate that fenofibrate may lower blood pressure and attenuate glomerular hypertrophy and collagen accumulation through the downregulation of cyclin D1 and upregulation of CYP monooxygenases in the late stage of type-2 diabetes.
Mathematical programming algorithms for regression-based nonlinear filtering in RN

This paper is concerned with regression under a "sum" of partial order constraints. Examples include locally monotonic, piecewise monotonic, runlength constrained, and unimodal and oligomodal regression. These are of interest not only in nonlinear filtering but also in density estimation and chromatographic analysis. It is shown that under a least absolute error criterion, these problems can be transformed into appropriate finite problems, which can then be efficiently solved via dynamic programming techniques. Although the result does not carry over to least squares regression, hybrid programming algorithms can be developed to solve least squares counterparts of certain problems in the class.
Innate Immune Responses Are Increased in Chronic Obstructive Pulmonary Disease

Background Chronic obstructive pulmonary disease (COPD) is characterised by irreversible airflow obstruction, neutrophilic airway inflammation and chronic bacterial colonisation, however the role of the innate immune response in the pathogenesis of COPD remains unclear. Methods Induced sputum was obtained from adults with COPD (n = 22), and healthy controls (n = 29) and was processed for differential cell counts. The sputum supernatant was assayed for innate immune mediators using ELISA, whilst sputum gene expression was measured using real-time PCR. Peripheral blood neutrophils were isolated and their response to lipopolysaccaride (LPS) stimulation was assessed in a subgroup of participants with COPD (n = 13) and healthy controls (n = 21). Results Participants with COPD had significantly higher protein levels of interleukin (IL)-8, and neutrophil elastase (NE) and detection of oncostatin M (OSM) compared to healthy controls. Gene expression for toll-like receptor (TLR) 2, IL-8 and OSM were also significantly higher in COPD participants. The level of IL-1β, surfactant protein (SP)-A, matrix metalloproteinase (MMP)-9 and TLR4 mRNA was not significantly different between groups. The level of innate immune response markers were highly associated with the presence of sputum neutrophils, each other and the degree of airflow limitation (FEV1/FVC). Peripheral blood neutrophils from participants with COPD had an increased response to stimulation by LPS; with a greater fold increase in the production of IL-8 and MMP-9 protein, and gene expression of IL-8, TLR2 and TLR4. Conclusions The innate immune response is increased in the airways and circulating neutrophils in COPD, and may be an important mechanism involved in disease pathogenesis.
Garlic as an inhibitor of Pseudomonas aeruginosa quorum sensing in cystic fibrosis—a pilot randomized controlled trial

Pseudomonas aeruginosa forms biofilms in the cystic fibrosis lung. Quorum sensing (QS) controls biofilm maturation, immune evasion, antibiotic tolerance and virulence factor production. Garlic shows QS inhibitory activity in vitro and in animal models. We report the first clinical trial in man of a QS inhibitor.
Get the most out of your sample: optimal unbiased estimators using partial information

Random sampling is an essential tool in the processing and transmission of data. It is used to summarize data too large to store or manipulate and meet resource constraints on bandwidth or battery power. Estimators that are applied to the sample facilitate fast approximate processing of queries posed over the original data and the value of the sample hinges on the quality of these estimators. Our work targets data sets such as request and traffic logs and sensor measurements, where data is repeatedly collected over multiple instances: time periods, locations, or snapshots. We are interested in operations, like quantiles and range, that span multiple instances. Subset-sums of these operations are used for applications ranging from planning to anomaly and change detection. Unbiased low-variance estimators are particularly effective as the relative error decreases with aggregation. The Horvitz-Thompson estimator, known to minimize variance for subset-sums over a sample of a single instance, is not optimal for multi-instance operations because it fails to exploit samples which provide partial information on the estimated quantity. We present a general principled methodology for the derivation of optimal unbiased estimators over sampled instances and aim to understand its potential. We demonstrate significant improvement in estimate accuracy of fundamental queries for common sampling schemes.