Miracle-dz/UniFAR-FTUs huggingface dataset:
Road Interpretation for Driver Assistance based on an Early Cognitive Vision System

In this work, we address the problem of road interpretation for driver assistance based on an early cognitive vision system. The structure of a road and the relevant traffic are interpreted in terms of ego-motion estimation of the car, independently moving objects on the road, lane markers and large scale maps of the road. We make use of temporal and spatial disambiguation mechanisms to increase the reliability of visually extracted 2D and 3D information. This information is then used to interpret the layout of the road by using lane markers that are detected via Bayesian reasoning. We also estimate the ego-motion of the car which is used to create large scale maps of the road and also to detect independently moving objects. Sample results for the presented algorithms are shown on a stereo image sequence, that has been collected from a structured road.
Nonnegative matrix factorization for segmentation analysis

The conducted research project is concerned with image segmentation – one of the central problems of image analysis. A new model of segmented image is proposed and used to develop tools for analysis of image segmentations: image specific evaluation of segmentation algorithms’ performance, extraction of image segment descriptors, and extraction of image segments. Prevalent segmentation models are typically based on the assumption of smoothness in the chosen image representation within the segments and contrast between them. The proposed model, unlike them, describes segmentations using image adaptive properties, which makes it relatively robust to context factors such as image quality or the presence of texture. The image representation in the proposed terms may be obtained in a fully unsupervised process and it does not require learning from other images. The proposed model characterizes the histograms, or some other additive feature vectors, calculated over the image segments as nonnegative combinations of basic histograms. It is shown that the correct (manually drawn) segmentations generally have similar descriptions in such representation. A specific algorithm to obtain such histograms and combination coefficients is proposed; it is based on nonnegative matrix factorization (NMF). NMF approximates a given data matrix as a product of two low rank nonnegative matrices, usually by minimizing the L2 or the KL distance between the data matrix and the matrix product. This factorization was shown to be useful for several important computer vision applications. New NMF algorithms are proposed here to minimize two kinds of the Earth Mover’s Distance (EMD) error between the data and the matrix product. We propose an iterative NMF algorithm (EMD NMF) and prove its convergence. The algorithm is based on linear programming. We discuss the numerical difficulties of the EMD NMF and propose an efficient approximation. The advantages of the proposed combination of linear image model with sophisticated decomposition method are demonstrated with several applications: First, we use the boundary mixing weights (the boundary is widened and is also considered a segment) to assess image segmentation quality in precision and recall terms without ground truth. We demonstrate a surprisingly high accuracy of the unsupervised estimates obtained with our method in comparison to human-judged ground truth. We use the proposed unsupervised measure to automatically improve the quality of popular segmentation algorithms. Second, we discuss the advantage of EMD NMF over L2-NMF in the context of two challenging computer vision tasks – face recognition and texture modeling. The latter task is built on the proposed image model and demonstrates its application to non-histogram features. Third, we show that a simple segmentation algorithm based on rough segmentation using bilateral EMD NMF performs well for many image types. T ec hn io n C om pu te r Sc ie nc e D ep ar tm en t P h. D . T he si s P H D -2 01 009 2 01 0
Tectono‐metamorphic history recorded in garnet porphyroblasts: insights from thermodynamic modelling and electron backscatter diffraction analysis of inclusion trails

In a Barrovian metamorphic sequence, garnetiferous mica schists document a heterogeneously developed superposition of sub‐orthogonal fabrics and multiple garnet growth episodes. In the variably deformed domains, four types of garnet porphyroblasts have been defined based on inclusion trail patterns. Modelled garnet zoning in the MnNCKFMASHTO system indicates a prograde evolution from 4–4.5 kbar and 490–510 °C to 5–6 kbar and 520–550 °C in the earliest subhorizontal fabric progressing towards 6.5–7.5 kbar and 560–590 °C in the subsequent subvertical foliation. This fabric is heterogeneously deformed into a shallow‐dipping retrograde foliation associated with garnet resorption. In situ electron backscatter diffraction measurements of ilmenite inclusions in individual garnet grains yield precise data on included planar and linear elements. Consistent orientations of internal foliations, lineations and foliation intersection axis sets indicate a superposition of three sub‐orthogonal foliation systems. Weak variations of internal records with increasing intensity of deformation suggest that a moderate buckling stage occurred, but apparent lack of porphyroblast rotation is interpreted as a result of dominant passive flow. Coupling the orientation of internal fabric sets with P–T estimates is used to complement the tectono‐metamorphic evolution of the thickened crust. We demonstrate that garnet porphyroblasts preserve features which reflect large‐scale tectonic processes in orogens.
Similar effects of bottom trawling and natural disturbance on composition and function of benthic communities across habitats

Bottom trawl fishing has widespread impacts on benthic habitats and communities. The benthic response to trawling seems to be smaller or absent in areas exposed to high natural disturbance, leading to the hypothesis that natural and trawl disturbance affect benthic communities in a similar way. However, systematic tests of this hypothesis at large spatial scales and with data from sites spanning a large range of natural disturbance do not exist. Here, we examine the effects of trawl and natural (tidal-bed shear stress) disturbance on benthic communities over gradients of commercial bottom trawling effort in 8 areas in the North and Irish Seas. Using a trait-based approach, that classified species by life-history strategies or by characteristics that provide a proxy for their role in community function, we found support for the hypothesis that trawl and natural disturbance affect benthic communities in similar ways. Both sources of disturbance caused declines in long-living, hard-bodied (exoskeleton) and suspension-feeding organisms. Given these similar impacts, there was no detectable trawling effect on communities exposed to high natural disturbance. Conversely, in 3 out of 5 areas with low bed shear stress, responses to trawling were detected and resulted in community compositions comparable with those in areas subject to high natural disturbance, with communities being composed of either small-sized, deposit-feeding animals or mobile scavengers and predators. The findings highlight that knowledge of the interacting effects of trawl and natural disturbance will help to identify areas that are more or less resilient to trawling and support the development of management plans that account for the environmental effects of fishing.
Dinàmica dels micronutrients en la caiguda i descomposició de la virosta de tres sistemes forestals del Montseny

catalaS'analitza la dinamica del Mn, Fe i Zn en la caiguda de la virosta i durant el proces de descomposicio d'un alzinar muntanyenc, una fageda i una avetosa del Montseny. En general, les concentracions de micronutrients en diferents fraccions de la virosta son mes elevades que les de la biomassa a causa de I'augment de metalls pesats en els organs morts. La fageda es el bosc que aporta mes quantitat de manganes i ferro, a traves de la caiguda de virosta, tot i que no es el que presenta la caiguda anual mes alta. Les fulles constitueixen la fraccio que aporta mes micronutrients (45-89 %) en els tres boscos. Mitjancant l'estudi de les variacions estacionals s'ha pogut apreciar que les concentracions maximes dels tres micronutrients solen coincidir amb els pics de caiguda de virosta. S'ha observat que aquests elements tendeixen a acumular-se, almenys en alguna part del proces de descomposicio. El Fe es el que presenta major immobilitzacio. El Mn pot alliberar-se amb mes facilitat si les condicions de pH i humitat son adequades. En conjunt, els tres boscos presenten diferencies importants, la interpretacio de les quals es complexa, en funcio de les difertncies de temperatura, humitat i caracteristiques estructurals de les fulles. EnglishThe dynamics of Mn, Fe and Zn has been studiedin the litterfall and in the decomposition process in individual monospecific stands of holm oak (Quercus ilex), beech (Fagus sylvatica) and fir (Abies alba) in the Montseny mountains. Usually, micronutrient concentrations in different litterfall fractions are higher than those in biomass due to the increase in dead organs. Beech is the forest with the highest manganese and iron return in litterfall. It has been observed that the maximum micronutrients concentrations usually coincide with litterfall peaks in each forest. These elements tend to acumulate in some steps of the decomposition process. Fe is the most immobilized nutrient. Mn is more readily released if the pH and wetness conditions are the right ones. In the whole, the three forests have important differences in micronutrient dynamics according to temperature, wetness and structural quality of litterfall fracions.
Short Duration Transient Visual Evoked Potentials in Glaucomatous Eyes

PurposeTo investigate the correlation between structural and functional damage in patients with asymmetric glaucoma using a newly developed short duration transient visual evoked potential (SD-tVEP) device. MethodsTwenty-five patients with visual acuity ≥20/30 and asymmetric visual field (VF) loss [inter-eye difference in mean deviation index (MD) of at least 3 dB] were enrolled. Patients underwent optical coherence tomography (OCT) for macular thickness measurement, scanning laser polarimetry with variable corneal compensation for retinal nerve fiber layer measurement, and SD-tVEP (10% and 85% Michelson contrast, acquisition time of 20 s) in both eyes within 2 months. We correlated VF MD and structural test results with SD-tVEP P100 latency and Delta Amplitude (N75-P100). ResultsUsing 10% contrast, there was a significant difference in SD-tVEP latency and amplitude between eyes with better and worse VF MD (P<0.001). MD correlated significantly with both SD-tVEP parameters (r>0.33, P⩽0.01). When using 85% contrast, SD-tVEP amplitude differed between eyes (P=0.01) and MD values correlated significantly with amplitude results (r=0.32, P=0.01), but not with latency (P=0.46). In eyes with more advanced VF loss, there was a positive and significant correlation between SD-tVEP amplitude (85% contrast) and macular thickness on OCT (r=0.47, P=0.01), but not with retinal nerve fiber layer measured with polarimetry (P=0.26). ConclusionsIn cases of asymmetric glaucoma, SD-tVEP results correlate significantly with the level of VF damage as measured by MD. In the eyes with more advanced VF loss, reduced SD-tVEP amplitude was associated with decreased macular thickness on OCT. These findings suggest that SD-tVEP may be a fast and objective method to assess or screen for functional damage in glaucomatous eyes.
Establishing the P–T path for Alpine Schist, Southern Alps near Hokitika, New Zealand

Pressure–temperature pseudosections for ‘greyschist’ (metamorphosed greywacke and argillite) from the Alpine Schist (Haast Schist group) near Hokitika (Southern Alps, New Zealand) are used to gain new insights into its metamorphic history. The rocks were metamorphosed at relatively low‐grade conditions associated with the first appearance and initial growth of garnet in the stability field of albite. The measured and predicted garnet compositional zoning data are used to construct an overall P–T path by combining P–T path results from nearby rocks that have a range of MnO contents. The P–T path obtained is steep from ∼380 °C/2.5 kbar up to ∼490 °C/8.5 kbar, then recurves sharply with garnet growth continuing during early decompression to ∼500 °C/6.5 kbar. Most garnet growth in the study area took place in the stability field of albite, with oligoclase appearing only during decompression, when the peristerite gap was entered. On appearance of oligoclase, there is a marked decrease in the CaO content of garnet. The preservation of mineral assemblages from near‐peak temperature conditions can be understood in terms of the P–T path subsequently becoming tangential to water content contours, during cooling with further decompression.
Crossmodal Attentive Skill Learner

This paper presents the Crossmodal Attentive Skill Learner (CASL), integrated with the recently-introduced Asynchronous Advantage Option-Critic (A2OC) architecture [Harb et al., 2017] to enable hierarchical reinforcement learning across multiple sensory inputs. We provide concrete examples where the approach not only improves performance in a single task, but accelerates transfer to new tasks. We demonstrate the attention mechanism anticipates and identifies useful latent features, while filtering irrelevant sensor modalities during execution. We modify the Arcade Learning Environment [Bellemare et al., 2013] to support audio queries, and conduct evaluations of crossmodal learning in the Atari 2600 game Amidar. Finally, building on the recent work of Babaeizadeh et al. [2017], we open-source a fast hybrid CPU-GPU implementation of CASL.
PRESS: a clustered server based on user-level communication

In this paper, we propose and evaluate a cluster-based network server called PRESS. The server relies on locality-conscious request distribution and a standard for user-level communication to achieve high performance and portability. We evaluate PRESS by first isolating the performance benefits of three key features of user-level communication: low processor overhead, remote memory accesses, and zero-copy transfers. Next, we compare PRESS to servers that involve less intercluster communication, but are not as easily portable. Our results for an 8-node server cluster and five WWW traces demonstrate that user-level communication can improve performance by as much as 52 percent compared to a kernel-level protocol. Low processor overhead, remote memory writes, and zero-copy all make nontrivial contributions toward this overall gain. Our results also show that portability in PRESS causes no throughput degradation when we exploit user-level communication extensively.
AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening

The involvement of ethylene in fruit ripening is well documented, though knowledge regarding the crosstalk between ethylene and other hormones in ripening is lacking. We discovered that AUXIN RESPONSE FACTOR 2A (ARF2A), a recognized auxin signaling component, functions in the control of ripening. ARF2A expression is ripening regulated and reduced in the rin, nor and nr ripening mutants. It is also responsive to exogenous application of ethylene, auxin and abscisic acid (ABA). Over-expressing ARF2A in tomato resulted in blotchy ripening in which certain fruit regions turn red and possess accelerated ripening. ARF2A over-expressing fruit displayed early ethylene emission and ethylene signaling inhibition delayed their ripening phenotype, suggesting ethylene dependency. Both green and red fruit regions showed the induction of ethylene signaling components and master regulators of ripening. Comprehensive hormone profiling revealed that altered ARF2A expression in fruit significantly modified abscisates, cytokinins and salicylic acid while gibberellic acid and auxin metabolites were unaffected. Silencing of ARF2A further validated these observations as reducing ARF2A expression let to retarded fruit ripening, parthenocarpy and a disturbed hormonal profile. Finally, we show that ARF2A both homodimerizes and interacts with the ABA STRESS RIPENING (ASR1) protein, suggesting that ASR1 might be linking ABA and ethylene-dependent ripening. These results revealed that ARF2A interconnects signals of ethylene and additional hormones to co-ordinate the capacity of fruit tissue to initiate the complex ripening process.
Using genetic algorithms for supervised concept learning

The authors consider the application of a genetic algorithm (GA) to a symbolic learning task namely, supervised concept learning from examples. A GA concept learner, GABL, that learns a concept from a set of positive and negative examples is implemented. GABL is run in a batch-incremental mode to facilitate comparison with an incremental concept learner, ID5R. Preliminary results show that, despite minimal system bias, GABL is an effective concept learner and is quite competitive with ID5R as the target concept increases in complexity. <<ETX>>
Three transitions in the RNA polymerase II transcription complex during initiation

We have analyzed transcription initiation by RNA polymerase II (pol II) in a highly efficient in vitro transcription system composed of essentially homogeneous protein preparations. The pol II complex was stalled on adenovirus major late promoter templates at defined positions, and the open region and RNA products of these complexes were examined. The first transition is formation of the open complex, which can be reversed by addition of ATPγS. The open region is no longer sensitive to ATPγS after formation of a four‐nucleotide RNA, which constitutes the second transition. This indicates that the ATP‐dependent DNA helicase activity of TFIIH is required to maintain the open region only during formation of the first three phosphodiester bonds. The downstream part of the transcription bubble expands in a continuous motion, but the initially opened region (−9/−2 on the non‐template strand) recloses abruptly when transcription reaches register 11. This third transition is accompanied by a switch from abortive to productive RNA synthesis, which implies promoter clearance. Our findings provide a framework to analyze regulation of these specific transitions during transcription initiation by pol II.
Does Abnormal Sleep Impair Memory Consolidation in Schizophrenia?

Although disturbed sleep is a prominent feature of schizophrenia, its relation to the pathophysiology, signs, and symptoms of schizophrenia remains poorly understood. Sleep disturbances are well known to impair cognition in healthy individuals. Yet, in spite of its ubiquity in schizophrenia, abnormal sleep has generally been overlooked as a potential contributor to cognitive deficits. Amelioration of cognitive deficits is a current priority of the schizophrenia research community, but most efforts to define, characterize, and quantify cognitive deficits focus on cross-sectional measures. While this approach provides a valid snapshot of function, there is now overwhelming evidence that critical aspects of learning and memory consolidation happen offline, both over time and with sleep. Initial memory encoding is followed by a prolonged period of consolidation, integration, and reorganization, that continues over days or even years. Much of this evolution of memories is mediated by sleep. This article briefly reviews (i) what is known about abnormal sleep in schizophrenia, (ii) sleep-dependent memory consolidation in healthy individuals, (iii) recent findings of impaired sleep-dependent memory consolidation in schizophrenia, and (iv) implications of impaired sleep-dependent memory consolidation in schizophrenia. This literature suggests that abnormal sleep in schizophrenia disrupts attention and impairs sleep-dependent memory consolidation and task automation. We conclude that these sleep-dependent impairments may contribute substantially to generalized cognitive deficits in schizophrenia. Understanding this contribution may open new avenues to ameliorating cognitive dysfunction and thereby improve outcome in schizophrenia.
Coregistering functional near-infrared spectroscopy with underlying cortical areas in infants

Abstract. Functional near-infrared spectroscopy (fNIRS) is becoming a popular tool in developmental neuroscience for mapping functional localized brain responses. However, as it cannot provide information about underlying anatomy, researchers have begun to conduct spatial registration of fNIRS channels to cortical anatomy in adults. The current work investigated this issue with infants by coregistering fNIRS and magnetic resonance imaging (MRI) data from 55 individuals. Our findings suggest that fNIRS channels can be reliably registered with regions in the frontal and temporal cortex of infants from 4 to 7 months of age. Although some macro-anatomical regions are difficult to consistently define, others are more stable and fNIRS channels on an age-appropriate MRI template are often consistent with individual infant MRIs. We have generated a standardized scalp surface map of fNIRS channel locators to reliably locate cortical regions for fNIRS developmental researchers. This new map can be used to identify the inferior frontal gyrus, superior temporal sulcus (STS) region [which includes the superior and middle temporal gyri (MTG) nearest to the STS], and MTG and temporal-parietal regions in 4- to 7-month-old infants. Future work will model data for the whole head, taking into account the properties of light transport in tissue, and expanding to different ages across development.
APE: Analyses of Phylogenetics and Evolution in R language

UNLABELLED Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics. APE provides both utility functions for reading and writing data and manipulating phylogenetic trees, as well as several advanced methods for phylogenetic and evolutionary analysis (e.g. comparative and population genetic methods). APE takes advantage of the many R functions for statistics and graphics, and also provides a flexible framework for developing and implementing further statistical methods for the analysis of evolutionary processes. AVAILABILITY The program is free and available from the official R package archive at http://cran.r-project.org/src/contrib/PACKAGES.html#ape. APE is licensed under the GNU General Public License.
Efficient use of side information in multiple-antenna data transmission over fading channels

We derive performance limits for two closely related communication scenarios involving a wireless system with multiple-element transmitter antenna arrays: a point-to-point system with partial side information at the transmitter, and a broadcast system with multiple receivers. In both cases, ideal beamforming is impossible, leading to an inherently lower achievable performance as the quality of the side information degrades or as the number of receivers increases. Expected signal-to-noise ratio (SNR) and mutual information are both considered as performance measures. In the point-to-point case, we determine when the transmission strategy should use some form of beamforming and when it should not. We also show that, when properly chosen, even a small amount of side information can be quite valuable. For the broadcast scenario with an SNR criterion, we find the efficient frontier of operating points and show that even when the number of receivers is larger than the number of antenna array elements, significant performance improvements can be obtained by tailoring the transmission strategy to the realized channel.