Miracle-dz/UniFAR-FTUs huggingface dataset:
Evaluation of the BacterioScan 216Dx for Standalone Preculture Screen of Preserved Urine Specimens in a Clinical Setting

Background The BacterioScan 216Dx laser microbial growth monitoring system was evaluated as an option for preurine culture screening of preserved urine specimens at an acute care medical center. Methods The BacterioScan 216Dx system performance characteristics and the economic impact (cost effectiveness) for the laboratory were assessed. Urinalysis performance compared to urine culture was assessed if urinalysis was ordered as part of the patient care set. Results When compared to urine culture, the BacterioScan had an overall performance with corresponding 95% confidence intervals of 76% (68-83) sensitivity, 84% (80-87) specificity, 55% (48-63) positive predictive value, and 93% (90-95) negative predictive value for 610 randomly selected preserved urine specimens. Urinalysis compared to urine culture overall performance was 59% (48-69) sensitivity, 87% (83-90) specificity, 53% (43-63) positive predictive value, 89% (86-92) negative predictive value for 414 urine specimens. Conclusions While the system did improve the turnaround time to a negative report, adoption of the BacterioScan system would increase the reagent budget for laboratory urine culture by 2.34 times the current cost, potentially making BacterioScan prohibitive in a budget restricted environment. Additionally, performance when compared to traditional urine culture was less than acceptable for a diagnostic laboratory to use as a stand-alone urinary tract infection screen.
Spatial-Temporal Dynamics of Stable Fly (Diptera: Muscidae) Trap Catches in Eastern Nebraska

ABSTRACT Spatial and temporal relationships among catches of adult stable flies, Stomoxys calcitrans (L.), on sticky traps in eastern Nebraska were evaluated. Twenty-five alsynite sticky traps were placed in a 5 by 5 grid with ≈1.6-km intervals in a mixed agricultural environment from 2003 to 2011. Denser grids of 45–90 traps were implemented for varying lengths of time during the course of the study. More than two million stable flies were collected over 9 yr. Seasonal abundances based upon total collections from the primary grid of 25 traps were bimodal most years with population peaks in June and September or October. Individual trap catches varied greatly, both spatially and temporally. Trap catches were spatially aggregated with autocorrelation extending to ≈2 km. Synchrony among trap catches declined linearly with respect to distance between traps and differences in seasonal distribution increased asymptotically relative to distance between traps. Proximity to confined livestock facilities increased catch and proportion of catch collected later in the season. Fifteen to 20 traps were adequate for estimating stable fly populations with the standard error of the mean equal to 30% of the mean for most of the stable fly season. Early and late in the season, when mean trap catches were low, between 100 and 135 traps would be needed to maintain that level of confidence. Seasonal collection distributions from permutations of subsets of the data with fewer than 24 traps differed significantly from those of the complete grid of 25 traps, indicating that 20 or more traps may be needed to evaluate the seasonal dynamics of a stable fly population.
BIDDING FOR PARKING: The Impact of University Affiliation on Predicting Bid Values in Dutch Auctions of On-Campus Parking Permits

Parking is often underpriced and expanding its capacity is expensive; universities need a better way of reducing congestion outside of building costly parking garages. Demand based pricing mechanisms, such as auctions, offer a possible solution to the problem by promising to reduce parking at peak times. However, faculty, students, and staff at universities have systematically different parking needs, leading to different parking valuations. In this study, I determine the impact university affiliation has on predicting bid values cast in three Dutch Auctions of on-campus parking permits sold at Chapman University in Fall 2010. Using clustering techniques crosschecked with university demographic information to detect affiliation groups, I ran a log-linear regression, finding that university affiliation had a larger effect on bid amount than on lot location and fraction of auction duration. Generally, faculty were predicted to have higher bids whereas students were predicted to have lower bids. JEL classification: C38; C57; D44; R4; R49
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2) Naïve Bayes classifier is also a linear classifier. It uses the joint probability of classifying categories and features to estimate the probabilities of categories given feature evidence using Bayes theorem, assuming that the conditional probabilities of the input features are independent given the class label. In our case, we convert every continuous feature such as expression correlation into several binary features by binning the data, and then use these binary features to construct the Naive Bayes classifier.
Comparison of intrathecal morphine and surgical-site infusion of ropivacaine as adjuncts to intravenous patient-controlled analgesia in living-donor kidney transplant recipients.

INTRODUCTION This prospective observational study compared the postoperative analgesic effectiveness of intrathecal morphine (ITM) and surgical-site infusion (SSI) of ropivacaine as adjuncts to intravenous (IV) patient-controlled analgesia (PCA) (fentanyl) in living-donor kidney transplant recipients. METHODS Patients undergoing living-donor kidney transplantation who received ITM or SSI in addition to IV PCA were included. Rescue analgesia was achieved with IV meperidine as required. The primary outcome, measured using the Numeric Pain Rating Scale (NRS), was pain at rest and when coughing. Patients were assessed for 48 hours after surgery. RESULTS A total of 53 patients (32 ITM, 21 SSI) were included in the study. The ITM group showed significantly lower NRS scores, at rest and when coughing, for up to 12 and eight hours. NRS scores were comparable between the groups at other times. The ITM group had significantly less postoperative systemic opioid requirement in the first 24 hours, but there was no significant difference between the systemic opioid consumption of the groups on postoperative Day 2. In the ITM group, 3 (9.4%) patients presented with bradypnoea and 1 (3.1%) with excessive sedation in the first 12 postoperative hours. More patients in the ITM group developed pruritus requiring treatment during the first 24 hours. There were no differences between the groups in other outcomes (e.g. nausea/vomiting, change in pulmonary or kidney functions). CONCLUSION Compared with SSI, ITM reduced immediate postoperative pain and IV opioid consumption on postoperative Day 1 after living-donor kidney transplantation, but at the cost of increased pruritus and respiratory depression.
Efficient Separation of Four Antibacterial Diterpenes from the Roots of Salvia Prattii Using Non-Aqueous Hydrophilic Solid-Phase Extraction Followed by Preparative High-Performance Liquid Chromatography

An efficient preparative procedure for the separation of four antibacterial diterpenes from a Salvia prattii crude diterpenes-rich sample was developed. Firstly, the XION hydrophilic stationary phase was chosen to separate the antibacterial crude diterpenes-rich sample (18.0 g) into three fractions with a recovery of 46.1%. Then, the antibacterial fractions I (200 mg), II (200 mg), and III (150 g) were separated by the Megress C18 preparative column, and compounds tanshinone IIA (80.0 mg), salvinolone (62.0 mg), cryptotanshinone (70.0 mg), and ferruginol (68.0 mg) were produced with purities greater than 98%. The procedure achieved large-scale preparation of the four diterpenes with high purity, and it could act as a reference for the efficient preparation of active diterpenes from other plant extracts.
Feasibility of using a smart unobtrusive wearable system for the autonomic characterisation of endurance trail runners

Wearable sensors currently represent a non-invasive way of monitoring health-related parameters, quite useful for both self-assessment and naturalistic studies. The autonomic imbalance experienced by athletes engaged in strenuous physical exercises could be also seen through this minimally obtrusive approach, possibly opening the field to a variety of novel investigations. Here, 41 athletes, taking part to two of the most strenuous ultra-trail competitions in Europe were assessed in terms of autonomic evaluation before, during and after the race, through a minimally invasive ECG system based on a fitness-like chest strap. Results showed an increased sympathetic activity both before and after the race, whereas vagal tone appeared increased during the race. Having proven the good feasibility of the proposed approach in such field, further investigations are needed to clarify the scientific basis explaining such modifications.
Cohort Profile Cohort Profile : The Korean Genome and Epidemiology Study ( KoGES ) Consortium

Worldwide globalization and Westernization in social and economic aspects have led to drastic changes in South Korea during the past several decades. These changes include individual health behaviours, which were reflected as increased prevalence of non-communicable chronic diseases (NCDs), such as type 2 diabetes mellitus (T2DM), hypertension, obesity and cardiovascular disease (CVD). These NCDs are known to be caused by both environmental risk factors and predisposing genetic factors. Population decline is another issue in South Korea; the recorded fertility rate was 1.3 births per woman, and 10% of the population were elderly individuals aged 65 years according to the Population and Housing Census results of 2005-2010. We have also been observing an increased influx and efflux of the population due to globalization. In particular, there has been a rising tendency in the marriage-based inflow of South Asian women during the last decade. To attempt to solve public health issues resulting from these population trends and prepare for personalized and preventive health care in the future, the Korean government (National Research Institute of Health (NIH), Centers for Disease Control and Prevention and the Ministry of Health and Welfare, Korea) initiated a large prospective cohort study with government funding, named the Korean genome and epidemiology study (KoGES). The study is a consortium project consisting of six prospective cohort studies that would be categorized into population-based and geneenvironment model studies (Figure 1). The aim of the KoGES was to establish a genome epidemiological study platform for the research community with a health database and biobank, to investigate the genetic and environmental aetiology of common complex diseases in Koreans (i.e. T2DM, hypertension, obesity, metabolic syndrome, osteoporosis, CVD,and cancer) and causes of death with longterm follow-up. The ultimate goal of the KoGES was to develop comprehensive and applicable health care guidelines for common complex diseases in Koreans, reduce the burden of chronic diseases and improve the quality of life.
Non-adrenergic control of lipolysis and thermogenesis in adipose tissues

ABSTRACT The enormous plasticity of adipose tissues, to rapidly adapt to altered physiological states of energy demand, is under neuronal and endocrine control. In energy balance, lipolysis of triacylglycerols and re-esterification of free fatty acids are opposing processes operating in parallel at identical rates, thus allowing a more dynamic transition from anabolism to catabolism, and vice versa. In response to alterations in the state of energy balance, one of the two processes predominates, enabling the efficient mobilization or storage of energy in a negative or positive energy balance, respectively. The release of noradrenaline from the sympathetic nervous system activates lipolysis in a depot-specific manner by initiating the canonical adrenergic receptor–Gs-protein–adenylyl cyclase–cyclic adenosine monophosphate–protein kinase A pathway, targeting proteins of the lipolytic machinery associated with the interface of the lipid droplets. In brown and brite adipocytes, lipolysis stimulated by this signaling pathway is a prerequisite for the activation of non-shivering thermogenesis. Free fatty acids released by lipolysis are direct activators of uncoupling protein 1-mediated leak respiration. Thus, pro- and anti-lipolytic mediators are bona fide modulators of thermogenesis in brown and brite adipocytes. In this Review, we discuss adrenergic and non-adrenergic mechanisms controlling lipolysis and thermogenesis and provide a comprehensive overview of pro- and anti-lipolytic mediators. Summary: In this Review, we discuss adrenergic and non-adrenergic mechanisms controlling lipolysis and thermogenesis in adipocytes and provide a comprehensive overview of pro- and anti-lipolytic mediators.
Assessing polyphenols content and antioxidant activity in coffee beans according to origin and the degree of roasting

Background The roasting stage constitutes a key component in the manufacturing process of natural coffee because temperature elicits changes in bioactive compounds such as polyphenols and that Maillard-reaction compounds appear, thus affecting the product’s sensory and antioxidant properties. Actual contents of these compounds may depend on which region the coffee is cultivated as well as the extent to which the beans are roasted Objectives To determine polyphenols content and antioxidant activity in the ‘Arabica’ coffee type coming from various world regions of its cultivation and which have undergone industrial roasting. Also to establish which coffee, taking into account the degree of roasting (ie. light, medium and strong), is nutritionally the most beneficial Materials and Methods The study material was natural coffee beans (100% Arabica) roasted to various degrees, as aforementioned, that had been cultivated in Brazil, Ethiopia, Columbia and India. Polyphenols were measured in the coffee beans by spectrophotometric means based on the Folin-Ciocalteu reaction, whereas antioxidant activity was measured colourimetrically using ABTS+ cat-ionic radicals Results Polyphenol content and antioxidant activity were found to depend both on the coffee’s origin and degree of roasting. Longer roasting times resulted in greater polyphenol degradation. The highest polyphenol concentrations were found in lightly roasted coffee, ranging 39.27 to 43.0 mg/g, whereas levels in medium and strongly roasted coffee respectively ranged 34.06 to 38.43 mg/g and 29.21 to 36.89 mg/g. Antioxidant activity however significantly rose with the degree of roasting, where strongly roasted coffee had higher such activity than lightly roasted coffee. This can be explained by the formation of Maillard-reaction compounds during roasting, leading then to the formation of antioxidant melanoidin compounds which, to a large extent, compensate for the decrease in polyphenols during roasting Conclusions Polyphenols levels and antioxidant activities in the studied Arabica coffee beans that had undergone roasting depended on the cultivation region of the world. Longer roasting caused a significant decline in polyphenols compound levels (from 7.3% to 32.1%) in the coffee beans. Antioxidant activities of coffee increased with roasting, despite reduced levels of natural antioxidants. From a nutritional standpoint, the most favoured coffees are those lightly or medium roasted
Thermo-mechanical properties of epoxy formulations with low glass transition temperatures

In microelectronics industry, epoxy is widely used as molding compounds, underfill encapsulants, and coatings for the protection of integrated circuits. It is possible to formulate epoxy materials with properties ranging from extreme flexibility to high strength and hardness. This paper presents the characterization of thermo-mechanical properties of epoxy formulations with low glass transition temperatures. Nine different formulations were prepared with different epoxy resins 1,4-butanediol diglycidyl ether (BDE), neopentyl glycol diglycidyl ether (NGDE), and diglycidyl 1,2-cyclohexanedicarboxylate (DCHC), cured with methylhexahydrophthalic anhydride (MHHPA) as hardener and different catalysts tertiary amine dimethylbenzylamine (DMBA), imidazole derivative 1-cyanoethyl-2-ethyl-4-methylimidazole (2E4MZ-CN), and metal chelate cobalt(II) acetylacetonate (CAA). Differential scanning calorimeter (DSC) was used to investigate the curing properties. The thermomechanical properties were characterized before and after moisture absorption. The glass transition temperature increases in the following order: NGDE<BDE<DCHC. These formulations showed higher moisture pickup than epoxy formulation based on bisphenol-A type epoxy resin. Significant decrease in glass transition temperature was observed after moisture absorption. The higher moisture pickup, the greater reduction in glass transition temperature. Loss factor versus temperature of moisture absorbed samples showed new peaks, indicating the interaction between the absorbed moisture and the polymer matrix.
Web-Based Activity Within a Sexual Health Economy: Observational Study

Background Regular testing for sexually transmitted infections (STIs) is important to maintain sexual health. Self-sampling kits ordered online and delivered in the post may increase access, convenience, and cost-effectiveness. Sexual health economies may target limited resources more effectively by signposting users toward Web-based or face-to-face services according to clinical need. Objective The aim of this paper was to investigate the impact of two interventions on testing activity across a whole sexual health economy: (1) the introduction of open access Web-based STI testing services and (2) a clinic policy of triage and signpost online where users without symptoms who attended clinics for STI testing were supported to access the Web-based service instead. Methods Data on attendances at all specialist public sexual health providers in an inner-London area were collated into a single database. Each record included information on user demographics, service type accessed, and clinical activity provided, including test results. Clinical activity was categorized as a simple STI test (could be done in a clinic or online), a complex visit (requiring face-to-face consultation), or other. Results Introduction of Web-based services increased total testing activity across the whole sexual health economy by 18.47% (from 36,373 to 43,091 in the same 6-month period—2014-2015 and 2015-2016), suggesting unmet need for testing in the area. Triage and signposting shifted activity out of the clinic onto the Web-based service, with simple STI testing in the clinic decreasing from 16.90% (920/5443) to 12.25% (511/4172) of total activity, P<. 001, and complex activity in the clinic increasing from 69.15% (3764/5443) to 74.86% (3123/4172) of total activity, P<. 001. This intervention created a new population of online users with different demographic and clinical profiles from those who use Web-based services spontaneously. Some triage and signposted users (29.62%, 375/1266) did not complete the Web-based testing process, suggesting the potential for missed diagnoses. Conclusions This evaluation shows that users can effectively be transitioned from face-to-face to Web-based services and that this introduces a new population to Web-based service use and changes the focus of clinic-based activity. Further development is underway to optimize the triage and signposting process to support test completion.
The Brain Reaction to Viewing Faces of Opposite- and Same-Sex Romantic Partners

We pursued our functional magnetic resonance imaging (fMRI) studies of the neural correlates of romantic love in 24 subjects, half of whom were female (6 heterosexual and 6 homosexual) and half male (6 heterosexual and 6 homosexual). We compared the pattern of activity produced in their brains when they viewed the faces of their loved partners with that produced when they viewed the faces of friends of the same sex to whom they were romantically indifferent. The pattern of activation and de-activation was very similar in the brains of males and females, and heterosexuals and homosexuals. We could therefore detect no difference in activation patterns between these groups.
A microbolometer-based far infrared radiometer to study thin ice clouds in the Arctic

Abstract. A far infrared radiometer (FIRR) dedicated to measuring radiation emitted by clear and cloudy atmospheres was developed in the framework of the Thin Ice Clouds in Far InfraRed Experiment (TICFIRE) technology demonstration satellite project. The FIRR detector is an array of 80 × 60 uncooled microbolometers coated with gold black to enhance the absorptivity and responsivity. A filter wheel is used to select atmospheric radiation in nine spectral bands ranging from 8 to 50 µm. Calibrated radiances are obtained using two well-calibrated blackbodies. Images are acquired at a frame rate of 120 Hz, and temporally averaged to reduce electronic noise. A complete measurement sequence takes about 120 s. With a field of view of 6°, the FIRR is not intended to be an imager. Hence spatial average is computed over 193 illuminated pixels to increase the signal-to-noise ratio and consequently the detector resolution. This results in an improvement by a factor of 5 compared to individual pixel measurements. Another threefold increase in resolution is obtained using 193 non-illuminated pixels to remove correlated electronic noise, leading an overall resolution of approximately 0.015 W m−2 sr−1. Laboratory measurements performed on well-known targets suggest an absolute accuracy close to 0.02 W m−2 sr−1, which ensures atmospheric radiance is retrieved with an accuracy better than 1 %. Preliminary in situ experiments performed from the ground in winter and in summer on clear and cloudy atmospheres are compared to radiative transfer simulations. They point out the FIRR ability to detect clouds and changes in relative humidity of a few percent in various atmospheric conditions, paving the way for the development of new algorithms dedicated to ice cloud characterization and water vapor retrieval.
REM Sleep Behavior Disorder and Cognitive Impairment in Parkinson's Disease

Study Objectives REM sleep behavior disorder (RBD) is a parasomnia affecting 33% to 46% of patients with Parkinson's disease (PD). The existence of a unique and specific impaired cognitive profile in PD patients with RBD is still controversial. We extensively assessed cognitive functions to identify whether RBD is associated with more severe cognitive deficits in nondemented patients with PD. Methods One hundred sixty‐two participants, including 53 PD patients with RBD, 40 PD patients without RBD, and 69 healthy subjects, underwent polysomnography, a neurological assessment and an extensive neuropsychological exam to assess attention, executive functions, episodic learning and memory, visuospatial abilities, and language. Results PD patients with RBD had poorer and clinically impaired performance in several cognitive tests compared to PD patients without RBD and healthy subjects. These two latter groups were similar on all cognitive measures. Mild cognitive impairment (MCI) diagnosis frequency was almost threefold higher in PD patients with RBD compared to PD patients without RBD (66% vs. 23%, p < .001). Moreover, subjective cognitive decline was reported in 89% of PD patients with RBD compared to 58% of PD patients without RBD (p = .024). Conclusions RBD in PD is associated with a more impaired cognitive profile and higher MCI diagnosis frequency, suggesting more severe and widespread neurodegeneration. This patient subgroup and their caregivers should receive targeted medical attention to better detect and monitor impairment and to enable the development of management interventions for cognitive decline and its consequences.