Miracle-dz/UniFAR-FTUs huggingface dataset:
Relation of Adult Height With Stroke Mortality in Japan NIPPON DATA80

Background and Purpose— The age-adjusted stroke mortality rate in Japan was the highest in the world from 1950 to the 1970s, but it started to dramatically decrease after 1965. In addition to improved management of high blood pressure, the increase in average height might also contribute to this reduction. The present study investigates whether height is an independent risk for stroke mortality in Japan. Methods— Among participants of the National Survey on Cardiovascular Diseases in 1980 who were randomly selected from the Japanese population, we followed up 3969 and 4955 Japanese men and women without prior cardiovascular disease for a maximum of 19 years and observed 158 and 132 stroke deaths. Results— Height was inversely correlated with age and with crude stroke mortality. The relationship was attenuated in men when we adjusted for age or other possible confounders (multivariate adjusted relative hazards of a 5-cm increase of height for stroke mortality: 0.92, 95% CI: 0.79 to 1.08). For women, the inverse relationship (relative hazard: 0.77: 95% CI: 0.64 to 0.91) remained after multivariate adjustment. These relationships persisted when we stratified participants by age. Conclusions— Height is inversely related to stroke mortality and the relationship is statistically significant among Japanese women.
Self-esteem revisited: Performance on the implicit relational assessment procedure as a measure of self- versus ideal self-related cognitions in dysphoria

Although depression is characterised by low self-esteem as measured by questionnaires, research using implicit measures of self-esteem has failed to reveal the expected differences between depressed and non-depressed individuals. In this study, we used an implicit measure which enables the differentiation of ideal self- and actual self-esteem, through the introduction of propositions: “I am” versus “I want to be”. We measured implicit relational associations about actual and ideal self in low (N=27) versus high dysphoric (N=29) undergraduates. Our data revealed that dysphoric individuals have a higher ideal self-esteem, and lower actual self-esteem in comparison to healthy participants. The results underscore the need to go beyond simple associations and suggest that the use of individual–specific propositions could enhance our understanding of the implicit measurement of self-esteem. Furthermore, these results underscore the importance of actual versus ideal self-discrepancy theories, which might guide the content of therapeutic interventions.
Ultra-succinct representation of ordered trees

There exist two well-known succinct representations of ordered trees: BP (balanced parenthesis) [Munro, Raman 2001] and DFUDS (depth first unary degree sequence) [Benoit et al. 2005]. Both have size 2n + o(n) bits for n-node trees, which asymptotically matches the information-theoretic lower bound. Many fundamental operations on trees can be done in constant time on word RAM, for example finding the parent, the first child, the next sibling, the number of descendants, etc. However there has been no single representation supporting every existing operation in constant time; BP does not support i-th child, while DFUDS does not support lca (lowest common ancestor). In this paper, we give the first succinct tree representation supporting every one of the fundamental operations previously proposed for BP or DFUDS along with some new operations in constant time. Moreover, its size surpasses the information-theoretic lower bound and matches the entropy of the tree based on the distribution of node degrees. We call this an ultra-succinct data structure. As a consequence, a tree in which every internal node has exactly two children can be represented in n + o(n) bits. We also show applications for ultra-succinct compressed suffix trees and labeled trees.
Investigating the effect of key mutations on the conformational dynamics of toll‐like receptor dimers through molecular dynamics simulations and protein structure networks

The Toll‐like receptors (TLRs) are critical components of the innate immune system due to their ability to detect conserved pathogen‐associated molecular patterns, present in bacteria, viruses, and other microorganisms. Ligand detection by TLRs leads to a signaling cascade, mediated by interactions among TIR domains present in the receptors, the bridging adaptors and sorting adaptors. The BB loop is a highly conserved region present in the TIR domain and is crucial for mediating interactions among TIR domain‐containing proteins. Mutations in the BB loop of the Toll‐like receptors, such as the A795P mutation in TLR3 and the P712H mutation (Lpsd mutation) in TLR4, have been reported to disrupt or alter downstream signaling. While the phenotypic effect of these mutations is known, the underlying effect of these mutations on the structure, dynamics and interactions with other TIR domain‐containing proteins is not well understood. Here, we have attempted to investigate the effect of the BB loop mutations on the dimer form of TLRs, using TLR2 and TLR3 as case studies. Our results based on molecular dynamics simulations, protein–protein interaction analyses and protein structure network analyses highlight significant differences between the dimer interfaces of the wild‐type and mutant forms and provide a logical reasoning for the effect of these mutations on adaptor binding to TLRs. Furthermore, it also leads us to propose a hypothesis for the differential requirement of signaling and bridging adaptors by TLRs. This could aid in further understanding of the mechanisms governing such signaling pathways.
A scalable information theoretic approach to distributed robot coordination

This paper presents a scalable information theoretic approach to infer the state of an environment by distributively controlling robots equipped with sensors. The robots iteratively estimate the environment state using a recursive Bayesian filter, while continuously moving to improve the quality of the estimate by following the gradient of mutual information. Both the filter and the controller use a novel algorithm for approximating the robots' joint measurement probabilities, which combines consensus (for decentralization) and sampling (for scalability). The approximations are shown to approach the true joint measurement probabilities as the size of the consensus rounds grows or as the network becomes complete. The resulting gradient controller runs in constant time with respect to the number of robots, and linear time with respect to the number of sensor measurements and environment discretization cells, while traditional mutual information methods are exponential in all of these quantities. Furthermore, the controller is proven to be convergent between consensus rounds and, under certain conditions, is locally optimal. The complete distributed inference and coordination algorithm is demonstrated in experiments with five quad-rotor flying robots and simulations with 100 robots.
Twinned Raphides of Calcium Oxalate in Grape (Vitis): Implications for Crystal Stability and Function

Among the higher plants that accumulate crystalline calcium oxalate, many taxa characteristically produce raphides, or needle‐shaped crystals. Substantial evidence has accumulated indicating that raphides function in plant defenses against herbivory and that their acicular shape is a critical component in proposed mechanisms for these defenses. Previous observations have shown that raphides in members of the Vitaceae are twinned crystals. In this study, the fine structure of raphides in Vitis was examined in order to determine the nature of twinning. Rotation of isolated raphides under cross‐polarized light revealed extinction patterns that indicated that raphides are twinned along their length. In cross sections of raphides, the twin plane extends across the raphides, parallel to their surfaces. The dissolution patterns observed in etched crystals indicate that the type of twinning is rotational. Parallels in other biomineralization systems indicate that the rotational nature of the twinning may increase mechanical strength. In addition, because twinning may affect crystal growth or enhance stability and persistence of crystals, it could be an important factor in allowing plant cells to produce the raphide morphology.
Alloy Design of Nano-sized Precipitates Bearing High-strength Ferritic Heat-resistant Steels

Precipitation site, morphology and high temperature stability of the fine carbonitride particles were precisely analyzed for the high strength ferritic heat resistant steels, both the 9%Cr-W containing ASME Gr. 92 and the 2.25%Cr-1%Mo-V ASME Gr. 22V. TEM observation, EDX analyses identified the fine (Nb,V) (C, N) precipitation inside of the lath structure of Gr. 92 steel and dense precipitation on the lath boundary of Gr. 22V steel. Thermodynamic calculation and the void strengthening estimation inferred that the nano-scale size particles inside of the lath structure effectively delayed the sub-grain microstructure degradation in Gr. 92 steel, and that the nano-scale size VC on the lath boundary possibly determined the creep rupture strength of Gr. 22V steel.
Repulsion of Superinfecting Virions: A Mechanism for Rapid Virus Spread

Viral Superspreaders Viruses are thought to spread across a lawn of cells by an iterative process of infection, replication, and release. If this were the case, the rate of spread would be limited by the viral replication kinetics. Now, Doceul et al. (p. 873, published online 21 January; see the Perspective by Pickup) describe a spreading mechanism used by vaccinia virus that is not restricted by viral replication kinetics and that causes a dramatic acceleration of spread. Early after infection, vaccinia virus proteins A33 and A36 are expressed as a complex on the cell surface. This marks the cell as infected and causes superinfecting virions to be repelled by the formation of actin projections beneath the virus particle. Virions are repelled from infected cells repeatedly until an uninfected cell is reached and are thus pushed further away from the origin of infection to accelerate dissemination. Early in infection, vaccinia virus exploits the actin cytoskeleton to promote rapid cell-to-cell spread. Viruses are thought to spread across susceptible cells through an iterative process of infection, replication, and release, so that the rate of spread is limited by replication kinetics. Here, we show that vaccinia virus spreads across one cell every 75 minutes, fourfold faster than its replication cycle would permit. To explain this phenomenon, we found that newly infected cells express two surface proteins that mark cells as infected and, via exploitation of cellular machinery, induce the repulsion of superinfecting virions away toward uninfected cells. Mechanistically, early expression of proteins A33 and A36 was critical for virion repulsion and rapid spread, and cells expressing these proteins repelled exogenous virions rapidly. Additional spreading mechanisms may exist for other viruses that also spread faster than predicted by replication kinetics.
BRCA Mutations and Risk of Prostate Cancer in Ashkenazi Jews

Purpose: The Breast Cancer Linkage Consortium and other family-based ascertainments have suggested that male carriers of BRCA mutations are at increased risk of prostate cancer. Several series looking at the frequency of BRCA mutations in unselected patients with prostate cancer have not confirmed this finding. To clarify this issue, we conducted a large case-control study. Experimental Design: Blood specimens from 251 unselected Ashkenazi men with prostate cancer were screened for the presence of one of the three common Ashkenazi founder mutations in BRCA1 and BRCA2. The incidence of founder mutations was compared with the incidence of founder mutations in 1472 male Ashkenazi volunteers without prostate cancer using logistic regression analysis after adjusting for age. Results: Thirteen (5.2%) cases had a deleterious mutation in BRCA1 or BRCA2 compared with 28 (1.9%) controls. After adjusting for age, the presence of a BRCA1 or BRCA2 mutation was associated with the development of prostate cancer (odds ratio, 3.41; 95% confidence interval, 1.64–7.06; P = 0.001). When results were stratified by gene, BRCA2 mutation carriers demonstrated an increased risk of prostate cancer (odds ratio, 4.78; 95% confidence interval, 1.87–12.25; P = 0.001), whereas the risk in BRCA1 mutation carriers was not significantly increased. Conclusions: BRCA2 mutations are more likely to be found in unselected individuals with prostate cancer than age-matched controls. These results support the hypothesis that deleterious mutations in BRCA2 are associated with an increased risk of prostate cancer.
Body Conscious? Interoceptive Awareness, Measured by Heartbeat Perception, Is Negatively Correlated with Self-Objectification

Background ‘Self-objectification’ is the tendency to experience one's body principally as an object, to be evaluated for its appearance rather than for its effectiveness. Within objectification theory, it has been proposed that self-objectification accounts for the poorer interoceptive awareness observed in women, as measured by heartbeat perception. Our study is, we believe, the first specifically to test this relationship. Methodology/Principal Findings Using a well-validated and reliable heartbeat perception task, we measured interoceptive awareness in women and compared this with their scores on the Self-Objectification Questionnaire, the Self-Consciousness Scale and the Body Consciousness Questionnaire. Interoceptive awareness was negatively correlated with self-objectification. Interoceptive awareness, public body consciousness and private body consciousness together explained 31% of the variance in self-objectification. However, private body consciousness was not significantly correlated with interoceptive awareness, which may explain the many nonsignificant results in self-objectification studies that have used private body consciousness as a measure of body awareness. Conclusions/Significance We propose interoceptive awareness, assessed by heartbeat perception, as a measure of body awareness in self-objectification studies. Our findings have implications for those clinical conditions, in women, which are characterised by self-objectification and low interoceptive awareness, such as eating disorders.
Experience-dependent firing rate remapping generates directional selectivity in hippocampal place cells

When rodents engage in irregular foraging in an open-field environment, hippocampal principal cells exhibit place-specific firing that is statistically independent of the direction of traverse through the place field. When the path is restricted to a track, however, in-field rates differ substantially in opposite directions. Frequently, the representations of the track in the two directions are essentially orthogonal. We show that this directionally selective firing is not hard-wired, but develops through experience-dependent plasticity. During the rats' first pass in each direction, place fields were highly directionally symmetric, whereas over subsequent laps, the firing rates in the two directions gradually but substantially diverged. We conclude that, even on a restricted track, place cell firing is initially determined by allocentric position, and only later, the within-field firing rates change in response to differential sensory information or behavioral cues in the two directions. In agreement with previous data, place fields near local cues, such as textures on the track, developed less directionality than place fields on a uniform part of the track, possibly because the local cues reduced the net difference in sensory input at a given point. Directionality also developed in an open environment without physical restriction of the animal's path, when rats learned to run along a specified path. In this case, directionality developed later than on the running track, only after the rats began to run in a stereotyped manner. Although the average population firing rates exhibited little if any change over laps in either direction, the direction-specific firing rates in a given place field were up-or down-regulated with about equal probability and magnitude, which was independent in the two directions, suggesting some form of competitive mechanism (e.g., LTP/LTD) acting coherently on the set of synapses conveying external information to each cell.
Longitudinal functional and NMR assessment of upper limbs in Duchenne muscular dystrophy

Objective: To explore the value of nuclear magnetic resonance (NMR) and functional assessments for follow-up of ambulatory and nonambulatory patients with Duchenne muscular dystrophy (DMD). Methods: Twenty-five 53-skippable patients with DMD were included in this study; 15 were nonambulatory at baseline. All patients underwent clinical and functional assessments every 6 months using the Motor Function Measure (MFM), hand grip and key pinch strength, MoviPlate, and NMR spectroscopy and imaging studies. Results: Upper limb distal strength decreased in nonambulatory patients over the period of 1 year; ambulatory patients showed improvement during the same period. The same applied for several NMRS indices, such as phosphocreatine/adenosine triphosphate, which decreased in older patients but increased in younger ambulatory patients. Fat infiltration in the upper limbs increased linearly with age. Almost all NMR and functional assessment results correlated. Conclusions: Our results underscore complementarity of functional and NMR assessments in patients with DMD. Sensitivity to change of various indices may differ according to disease stage.
Cell Traction Force Mapping in MG63 and HaCaTs

The ability of a cell to adhere and transmit traction forces to a surface reveals the cytoskeleton integrity of a cell. Shear sensitive liquid crystals were discovered with new function in sensing cell traction force recently. This liquid crystal has been previously shown to be non-toxic, linear viscoelastic and sensitive to localized exerted forces. This paper reports the possibility of extending the application of the proposed liquid crystal based cell force sensor in sensing traction forces of osteoblast-like (MG-63) and human keratinocyte (HaCaT) cell lines exerted to the liquid crystal sensor. Incorporated with cell force measurement software, force distributions of both cell types were represented in force maps. For these lowly contractile cells, chondrocytes expressed regular forces (10 – 90 nN, N = 200) around the circular cell body whereas HaCaT projected forces (0 – 200 nN, N = 200) around the perimeter of poly-hedral shaped body. These forces are associated with the organisation of the focal adhesion expressions and stiffness of the LC substrate. From the results, liquid crystal based cell force sensor system is shown to be feasible in detecting forces of both MG63 and HaCaT.
GPC-3 in hepatocellular carcinoma: current perspectives

Glypican-3 (GPC3), a member of heparan sulfate proteoglycans, attaches to the cell membrane and is frequently observed to be elevated in hepatocellular carcinoma (HCC). However, GPC3 is not detected in normal liver tissues and benign liver lesions. Consequently, GPC3 is currently being used as a diagnostic biomarker and HCC-specific positron emission computed tomography probe to identify HCCs in normal liver tissues and benign liver lesions. The overexpression of GPC-3 in serum or liver tissue also predicts poor prognosis for HCC patients. In addition, GPC3 promotes HCC growth and metastasis by activating the canonical Wnt and other signaling pathways. Targeting of GPC3, including GC33, HN3 and YP7, might offer new immunotherapeutic tools for HCC treatment.
Oxidative stress and aging: beyond correlation

The oxidative stress theory of aging has become increasingly accepted as playing a role in the aging process, based primarily on a substantial accumulation of circumstantial evidence. In recent years, the hypothesis that mitochondrially generated reactive oxygen species play a role in organismal aging has been directly tested in both invertebrate and mammalian model systems. Initial results imply that oxidative damage, specifically the level of superoxide, does play a role in limiting the lifespans of invertebrates such as Drosophila melanogaster and Caenorhabditis elegans. In mammalian model systems, the effect of oxidative stress on lifespan is less clear, but there is evidence that antioxidant treatment protects against age‐related dysfunction, including cognitive decline.
Application of Isotopic Techniques Using Constant Specific Activity or Enrichment to the Study of Carbohydrate Metabolism

Tracer techniques have become an established part of metabolic research and indeed are a fundamental part of our understanding of carbohydrate metabolism in humans. This review is meant to provide a basic overview of the problems and potential pitfalls associated with these techniques in the hope that they are reliably applied to newer areas of research. A quantitative measurement of the substrate fluxes that determine fasting or postprandial glucose concentrations is central to the determination of the pathophysiology of disease states and of measuring the effect of therapeutic interventions on the disease state. During the fasting state, glucose concentrations are dependent on the rate of endogenous glucose production (EGP) relative to the rate of glucose disappearance; measurement using tracer techniques is quite straightforward. The situation is more complex in the postprandial state, where gastric emptying, glucose absorption, the net sum of splanchnic extraction of ingested glucose (and therefore the rate of systemic appearance of ingested glucose), EGP, and glucose disappearance determine postprandial glucose concentrations (1,2). The tracer-based methodologies used to measure these fluxes, and their potential pitfalls, will be discussed. ### Tracers: stable vs. radioisotopes. The use of a substance (tracer) that can be used to follow a naturally occurring substrate (tracee) requires that such a substance experience the identical metabolic fate as the tracee. The ideal tracer can be detected with such precision as to require administration in trace amounts, thereby avoiding any alteration in the metabolism of the tracee (3). Tracers used for the purpose of metabolic research in humans are usually identical to the tracee, except that one or more atoms differ from the more abundant naturally occurring form of that atom. Such isotopes are radioactive when they spontaneously disintegrate to form another element, releasing radiation as a by-product of the decay. For example, 3H, which has one proton …