Miracle-dz/UniFAR-FTUs huggingface dataset:
Nutrition of the broiler chicken around the period of compensatory growth.

Three experiments were conducted with cage-reared broilers to 21 d following nutrient restriction from 6 to 12 d age. In Experiment 1, birds were full-fed from 6 to 11 or given 50% of ad libitum intake on a daily basis, or 100% of ad libitum intake on a daily basis when the diet was diluted 50% with oat hulls. Birds were not able to fully recover body weight depression by 21 d, although birds previously restricted, by whatever method, were more efficient (P < 0.01) in overall energy intake:body weight gain. Prior feed restriction had no effect on ability to metabolize diet energy (P > 0.05), although these birds did exhibit increased nitrogen retention compared to birds full-fed from 6 to 11 d. In a second experiment, birds were fed diets with 1.25, 1.38, 1.51, 1.63, 1.76, or 1.88% lysine in the realimentation diet from 12 to 21 d. Lysine level had no effect on growth rate or feed efficiency (P > 0.05) for full-fed birds; however there was a linear (P < 0.05) decline in growth rate from 12 to 21 d in response to extra dietary lysine for the birds previously feed restricted from 6 to 12 d. In a third experiment, birds were fed diets varying in energy (3,000 to 3,300 kcal/kg) or protein (22 to 29% CP) from 12 to 21 d following ad libitum vs 50% feed restriction from 6 to 11 d age. Protein level of the diet had little effect on performance traits to 21 d, although there was an indication of improved growth in response to the higher energy concentration. Birds full-fed from 6 to 11 d showed increased liver size at 21 d when fed more protein, although the converse was true for the restricted birds (P < 0.05). The growth response to diet energy was associated with increased carcass fatness. In general, there does not seem to be any advantage to manipulating diet formulation during realimentation of birds previously nutrient-restricted.
X-Press: Two-Stage X-Tolerant Compactor With Programmable Selector

This paper presents X-Press - a new two-stage test-response compactor that can be easily integrated with a multiple scan-chain environment. This compactor preserves all benefits of spatial compaction and offers, due to its overdrive sequential section, compression much higher than the ratio of scan chains to compactor outputs. X-Press is also capable of handling a wide range of unknown (X) state profiles by deploying a two-level scan-chain-selection mechanism. In addition to a new compactor architecture, original contributions of this paper include a detailed analysis of two-level error masking caused by X states and a new algorithm to both rank scan chains and then to determine, in per-pattern mode, scan-chain-selection rules used to suppress X states. Experimental results obtained for a variety of designs show feasibility and efficiency of the proposed compaction scheme, altogether with actual impact of X states on a test-pattern count. Finally, diagnostic capabilities of the proposed scheme accompanied by further experimental results are also analyzed.
Extracellular protons enable activation of the calcium‐dependent chloride channel TMEM16A

The calcium‐activated chloride channel TMEM16A provides a pathway for chloride ion movements that are key in preventing polyspermy, allowing fluid secretion, controlling blood pressure, and enabling gastrointestinal activity. TMEM16A is opened by voltage‐dependent calcium binding and regulated by permeant anions and intracellular protons. Here we show that a low proton concentration reduces TMEM16A activity while maximum activation is obtained when the external proton concentration is high. In addition, protonation conditions determine the open probability of TMEM16A without changing its calcium sensitivity. External glutamic acid 623 (E623) is key for TMEM16A's ability to respond to external protons. At physiological pH, E623 is un‐protonated and TMEM16A is activated when intracellular calcium increases; however, under acidic conditions E623 is partially protonated and works synergistically with intracellular calcium to activate the channel. These findings are critical for understanding physiological and pathological processes that involve changes in pH and chloride flux via TMEM16A.
Occupations, work characteristics and common mental disorder

Background The present study aimed to assess the prevalence of common mental disorders (CMDs) by occupation in a representative sample of the English adult population. Another aim was to examine whether the increased risk of CMD in some occupations could be explained by adverse work characteristics. Method We derived a sample of 3425 working-age respondents from the Adult Psychiatric Morbidity Survey 2007. Occupations were classified by Standard Occupational Classification group, and CMD measured by the Revised Clinical Interview Schedule. Job characteristics were measured by questionnaire, and tested as explanatory factors in associations of occupation and CMD. Results After adjusting for age, gender, housing tenure and marital status, caring personal service occupations had the greatest risk of CMD compared with all occupations (odds ratio 1.73, 95% confidence interval 1.16–2.58). The prevalence of adverse psychosocial work characteristics did not follow the pattern of CMD by occupation. Work characteristics did not explain the increased risk of CMDs associated with working in personal service occupations. Contrary to our hypotheses, adding work characteristics individually to the association of occupation and CMD tended to increase rather than decrease the odds for CMD. Conclusions As has been found by others, psychosocial work characteristics were associated with CMD. However, we found that in our English national dataset they could not explain the high rates of CMD in particular occupations. We suggest that selection into occupations may partly explain high CMD rates in certain occupations. Also, we did not measure emotional demands, and these may be important mediators of the relationship between occupation type and CMDs.
Field oriented control of an axial flux permanent magnet synchronous motor for traction solutions

Electric Vehicles (EVs) are increasingly used nowadays, and different powertrain solutions can be adopted. This paper describes the control system of an axial flux Permanent Magnet Synchronous Motor (PMSM) for EVs powertrain. It is described the implemented Field Oriented Control (FOC) algorithm and the Space Vector Modulation (SVM) technique. Also, the mathematical model of the PMSM is presented. Both, simulation and experimental, results with different types of mechanical load are presented. The experimental results were obtained using a laboratory test bench. The obtained results are discussed.
Analysis of the Cariogenic Potential of Various Almond Milk Beverages using a Streptococcus mutans Biofilm Model in vitro

To evaluate the cariogenic properties of almond milk beverages, 6 almond milks, along with soy and whole bovine milk, were analyzed for their abilities to support Streptococcus mutans biofilm formation and acid production, and their capacity to buffer changes in pH. Biofilm formation by S. mutans was analyzed using an in vitro 96-well plate model and measured by crystal violet staining. Acid production by S. mutans was evaluated by a colorimetric L-lactate assay and pH measurement of bacterial cultures. Buffering capacity was assessed by a pH titration assay. Soy milk supported the most biofilm growth, while the least was observed with unsweetened almond milk (both p < 0.001). Among almond milks, sucrose-sweetened milk led to the highest level of biofilm formation (p < 0.001), while the least was observed with unsweetened milk (p < 0.05). Sucrose-sweetened almond milk yielded the lowest pH (4.56 ± 0.66), followed by soy milk and bovine milk; the highest pH was with unsweetened almond milk (6.48 ± 0.5). When analyzed by pH titration, the unsweetened almond milk displayed the weakest buffering capacity while bovine milk showed the highest (p < 0.001). These results suggest that the almond milk beverages, except those that are sweetened with sucrose, possess limited cariogenic properties, while soy milk exhibits the most cariogenic potential. As milk alternatives become increasingly popular, dentists must counsel their patients that almond milks, especially sucrose-sweetened varieties, have cariogenic potential. For patients who are lactose-intolerant or suffer from milk allergy, almond milks may be a better alternative than soy-based products.
Revealing unobserved factors underlying cortical activity using a rectified latent variable model applied to neural population recordings

The activity of sensory cortical neurons is not only driven by external stimuli, but is also shaped by other sources of input to the cortex. Unlike external stimuli these other sources of input are challenging to experimentally control or even observe, and as a result contribute to variability of neuronal responses to sensory stimuli. However, such sources of input are likely not “noise”, and likely play an integral role in sensory cortex function. Here, we introduce the rectified latent variable model (RLVM) in order to identify these sources of input using simultaneously recorded cortical neuron populations. The RLVM is novel in that it employs non-negative (rectified) latent variables, and is able to be much less restrictive in the mathematical constraints on solutions due to the use an autoencoder neural network to initialize model parameters. We show the RLVM outperforms principal component analysis, factor analysis and independent component analysis across a variety of measures using simulated data. We then apply this model to the 2-photon imaging of hundreds of simultaneously recorded neurons in mouse primary somatosensory cortex during a tactile discrimination task. Across many experiments, the RLVM identifies latent variables related to both the tactile stimulation as well as non-stimulus aspects of the behavioral task, with a majority of activity explained by the latter. These results suggest that properly identifying such latent variables is necessary for a full understanding of sensory cortical function, and demonstrates novel methods for leveraging large population recordings to this end.
DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes

Cytosine methylation regulates essential genome functions across eukaryotes, but the fundamental question of whether nucleosomal or naked DNA is the preferred substrate of plant and animal methyltransferases remains unresolved. Here, we show that genetic inactivation of a single DDM1/Lsh family nucleosome remodeler biases methylation toward inter-nucleosomal linker DNA in Arabidopsis thaliana and mouse. We find that DDM1 enables methylation of DNA bound to the nucleosome, suggesting that nucleosome-free DNA is the preferred substrate of eukaryotic methyltransferases in vivo. Furthermore, we show that simultaneous mutation of DDM1 and linker histone H1 in Arabidopsis reproduces the strong linker-specific methylation patterns of species that diverged from flowering plants and animals over a billion years ago. Our results indicate that in the absence of remodeling, nucleosomes are strong barriers to DNA methyltransferases. Linker-specific methylation can evolve simply by breaking the connection between nucleosome remodeling and DNA methylation.
Essential Role of DNA Methyltransferase 1–mediated Transcription of Insulin-like Growth Factor 2 in Resistance to Histone Deacetylase Inhibitors

Purpose: Histone deacetylase inhibitors (HDI) are promising anticancer therapies; however, drug resistance limits their efficacy. Here, we investigated the molecular mechanisms underlying HDI resistance, focusing on the mechanism of HDI-mediated induction of insulin-like growth factor 2 (IGF2) based on our previous study. Experimental Design: The methylation status of CCCTC-binding factor (CTCF)-binding sites in the IGF2/H19 imprinting control region (ICR) were determined by methylation-specific PCR and bisulfite sequencing. The effectiveness of single or combinatorial blockade of DNA methyltransferase 1 (DNMT1) and histone deacetylase (HDAC) was evaluated using cell viability assay and patient-derived tumor xenograft (PDX) model. Results: HDAC inhibition by vorinostat increased acetylated STAT3 (K685), resulting in transcriptional upregulation of DNMT1. DNMT1-mediated hypermethylation of CTCF-binding sites in the IGF2/H19 ICR decreased CTCF insulator activity, leading to a transcriptional upregulation of IGF2 and activation of the insulin-like growth factor 1 receptor (IGF-1R) pathway in cells with acquired or de novo vorinostat resistance. Strategies targeting DNMT1 diminished the IGF2 expression and potentiated vorinostat sensitivity in preclinical models of lung cancer with hypermethylation in the H19/IGF2 ICR. The degree of ICR hypermethylation correlated with vorinostat resistance in patient-derived lung tumors and in patients with hematologic malignancies. Conclusions: DNMT1-mediated transcriptional upregulation of IGF2 is a novel mechanism of resistance to HDIs, highlighting the role of epigenetic deregulation of IGF2 in HDI resistance and the potential value of the H19/IGF2 ICR hypermethylation and DNMT1 expression as predictive biomarkers in HDI-based anticancer therapies. Clin Cancer Res; 23(5); 1299–311. ©2016 AACR.
Discovery of Flavonoids from Scutellaria baicalensis with Inhibitory Activity Against PCSK 9 Expression: Isolation, Synthesis and Their Biological Evaluation

Nine flavonoids were isolated and identified from a chloroform-soluble fraction of the roots of Scutellaria baicalensis through a bioactivity-guided fractionation using a proprotein convertase subtilisin/kexin type 9 (PCSK9) monitoring assay in HepG2 cells. All structures were established by interpreting the corresponding spectroscopic data and comparing measured values from those in the literature. All compounds were assessed for their ability to inhibit PCSK9 mRNA expression; compounds 1 (3,7,2′-trihydroxy-5-methoxy-flavanone) and 4 (skullcapflavone II) were found to suppress PCSK9 mRNA via SREBP-1. Furthermore, compound 1 was found to increase low-density lipoprotein receptor protein expression. Also, synthesis of compound 1 as a racemic mixture form (1a) was completed for the first time. Natural compound 1 and synthetic racemic 1a were evaluated for their inhibitory activities against PCSK9 mRNA expression and the results confirmed the stereochemistry of 1 was important.
Bridging the Gap between Protocol and Physical Models for Wireless Networks

This paper tries to reconcile the tension between the physical model and the protocol model that have been used to characterize interference relationship in a multihop wireless network. The physical model (a.k.a. signal-to-interference-and-noise ratio model) is widely considered as a reference model for physical layer behavior but its application in multihop wireless networks is limited by its complexity. On the other hand, the protocol model (a.k.a. disk graph model) is simple but there have been doubts on its validity. This paper explores the following fundamental question: How to correctly use the protocol interference model? We show that, in general, solutions obtained under the protocol model may be infeasible and, thus, results based on blind use of protocol model can be misleading. We propose a new concept called "reality check” and present a method of using a protocol model with reality check for wireless networks. Subsequently, we show that by appropriate setting of the interference range in the protocol model, it is possible to narrow the solution gap between the two models. Our simulation results confirm that this gap is indeed small (or even negligible). Thus, our methodology of joint reality check and interference range setting retains the protocol model as a viable approach to analyze multihop wireless networks.
Trends in infective endocarditis.

INTRODUCTION Infectious endocarditis (IE) is a rare disease with a high mortality. In 2009, the European society of cardiology restricted antibiotic prophylaxis to a smaller number of cardiac conditions with very high risk for IE. Did these changes in the guidelines have an impact on the epidemiological and bacteriological profile of IE? AIM The main aim of our work was to study the evolution of the microbiological profile of IE from 1991 to 2016. METHODS We realized an analytic retrospective study comparing two groups: group 1 included patients admitted for a certain IE before September 2009 and group 2 those admitted after that date. RESULTS Patients mean age was 46 ± 13 years and sex ratio was of 1.5. Forty percent of the patients were at high risk of IE. Blood cultures were positive in 19 cases. The most frequently isolated germ was Staphylococcus (10 patients). Serology was performed in six patients and was positive for Chlamydia Trachomatis in two cases. Forty-two patients had surgical treatment, 17 had a valve culture that was positive in 3 cases only. Clinical and paraclinic characteristics were comparable among the two groups. Negative blood cultures rates decreased from 72% to 68% between group 1 and 2 (p = 0.789). Staphylococcus positive blood cultures increased from 13% to 21% (p = 0.49). In contrast, Streptococcal positive blood cultures decreased from 11% to 5% in 2009 (p = 0.69). CONCLUSION Our data suggest that there has been no change in the bacteriological profile of IE after the reduction in antibiotic prophylaxis.
Impacts of global open-fire aerosols on direct radiative, cloud and surface-albedo effects simulated with CAM5

Abstract. Aerosols from open-land fires could significantly perturb the global radiation balance and induce climate change. In this study, Community Atmosphere Model version 5 (CAM5) with prescribed daily fire aerosol emissions is used to investigate the spatial and seasonal characteristics of radiative effects (REs, relative to the case of no fires) of open-fire aerosols including black carbon (BC) and particulate organic matter (POM) from 2003 to 2011. The global annual mean RE from aerosol–radiation interactions (REari) of all fire aerosols is 0.16 ± 0.01 W m−2 (1σ uncertainty), mainly due to the absorption of fire BC (0.25 ± 0.01 W m−2), while fire POM induces a small effect (−0.05 and 0.04 ± 0.01 W m−2 based on two different methods). Strong positive REari is found in the Arctic and in the oceanic regions west of southern Africa and South America as a result of amplified absorption of fire BC above low-level clouds, in general agreement with satellite observations. The global annual mean RE due to aerosol–cloud interactions (REaci) of all fire aerosols is −0.70 ± 0.05 W m−2, resulting mainly from the fire POM effect (−0.59 ± 0.03 W m−2). REari (0.43 ± 0.03 W m−2) and REaci (−1.38 ± 0.23 W m−2) in the Arctic are stronger than in the tropics (0.17 ± 0.02 and −0.82 ± 0.09 W m−2 for REari and REaci), although the fire aerosol burden is higher in the tropics. The large cloud liquid water path over land areas and low solar zenith angle of the Arctic favor the strong fire aerosol REaci (up to −15 W m−2) during the Arctic summer. Significant surface cooling, precipitation reduction and increasing amounts of low-level cloud are also found in the Arctic summer as a result of the fire aerosol REaci based on the atmosphere-only simulations. The global annual mean RE due to surface-albedo changes (REsac) over land areas (0.03 ± 0.10 W m−2) is small and statistically insignificant and is mainly due to the fire BC-in-snow effect (0.02 W m−2) with the maximum albedo effect occurring in spring (0.12 W m−2) when snow starts to melt.
Ontogeny and Microanatomy of the Nasal Turbinals in Lemuriformes

The nasal cavity of strepsirrhine primates (lemurs and lorises) has the most primitive arrangement of extant primates. In nocturnal species, the numerous turbinals of the ethmoid bear a large surface area of olfactory mucosa (OM). In this study, we examine turbinal development in four genera of diurnal or cathemeral lemuriformes. In addition, we examined an age series of each genus to detect whether structures bearing OM as opposed to respiratory mucosa (RM) develop differently, as has been observed in nocturnal strepsirrhines. In adults, the maxilloturbinal is covered by highly vascular respiratory mucosa throughout its entire length, with large sinusoidal vessels in the lamina propria; any parts of other turbinals that closely borders the maxilloturbinal has a similar mucosa. Posteriorly, the most vascular RM is restricted in the nasopharyngeal duct, which becomes partitioned from the dorsal olfactory region. A comparison of newborns to adults reveals that the first ethmoturbinal increases more in length in the parts that are covered with RM than OM, which supports the idea that ethmoturbinals can specialize in more than one function. Finally, we observe that the regions of turbinals that are ultimately covered with RM develop more accessory lamellae or additional surface area of existing scrolls compared to the regions covered with OM. Because such outgrowths of bone develop postnatally and without cartilaginous precursors, we hypothesize that the complexity of olfactory lamellae within the ethmoturbinal complex is primarily established at birth, while respiratory lamellae become elaborated due to the epigenetic influence of respiratory physiology. Anat Rec, 299:1492–1510, 2016. © 2016 Wiley Periodicals, Inc.
Constant-factor approximation for ordered k-median

We study the Ordered k-Median problem, in which the solution is evaluated by first sorting the client connection costs and then multiplying them with a predefined non-increasing weight vector (higher connection costs are taken with larger weights). Since the 1990s, this problem has been studied extensively in the discrete optimization and operations research communities and has emerged as a framework unifying many fundamental clustering and location problems such as k-Median and k-Center. Obtaining non-trivial approximation algorithms was an open problem even for simple topologies such as trees. Recently, Aouad and Segev (2017) were able to obtain an O(log n) approximation algorithm for Ordered k-Median using a sophisticated local-search approach. The existence of a constant-factor approximation algorithm, however, remained open even for the rectangular weight vector. In this paper, we provide an LP-rounding constant-factor approximation algorithm for the Ordered k-Median problem. We achieve this result by revealing an interesting connection to the classic k-Median problem. In particular, we propose a novel LP relaxation that uses the constraints of the natural LP relaxation for k-Median but minimizes over a non-metric, distorted cost vector. This cost function (approximately) emulates the weighting of distances in an optimum solution and can be guessed by means of a clever enumeration scheme of Aouad and Segev. Although the resulting LP has an unbounded integrality gap, we can show that the LP rounding process by Charikar and Li (2012) for k-Median, operating on the original, metric space, gives a constant-factor approximation when relating not only to the LP value but also to a combinatorial bound derived from the guessing phase. To analyze the rounding process under the non-linear, ranking-based objective of Ordered k-Median, we employ several new ideas and technical ingredients that we believe could be of interest in some of the numerous other settings related to ordered, weighted cost functions.