Miracle-dz/UniFAR-FTUs huggingface dataset:
Advances in the Diagnosis of Sepsis: Hydrogen Sulfide as a Prognostic Marker of Septic Shock Severity

Hydrogen sulfide (H2S) is a third known gasotransmitter. Most of the time it was knows as a poisonous gas. In last 30 years, we are seeing change in its perception. Scientists have discovered its major role in different organ systems. It is endogenously produced in various tissues and its production is influenced by many factors. In normal, physiological conditions only 20% of H2S is in its free form. The role of H2S is very wide. It acts as a signaling molecule, has influence on vascular tone, inflammatory response, scavenges reactive oxygen species, can be cytoprotective and can even reduce the extent of myocardial ischemia. Different studies have shown H2S has considerable influence in pathology of sepsis and its outcome. High free plasma levels of H2S are predictor of unfavorable outcome. Findings show that moderate free plasma levels of H2S have protective effect. Paradoxical very low free plasma levels of H2S, seen in patients with chronic heart failure, are also predictor of severity of disease and poor outcome. We presume that relationship between morbidity/mortality and concentration of H2S has a wide U-shape curve dependence. New researches with discovery of H2S agonists and antagonists could open new ways in understanding different pathologies and ability to treat them. Recent advances in the identification of H2S agonists and antagonists may help in forwarding our understanding of pathomechanisms and hence their treatment.
Durabilité des géotextiles aramides en milieu alcalin

ABSTRACT Because of their high initial properties, aramid geotextiles have been used for a decade for ground reinforcement. Today, the geotextiles manufacturers think about their use in alkaline grounds. However there are few data on the long-term behaviour of aramid fibres under these conditions. Consequently, a durability study in a basic environment has been carried out in order to improve understanding of the degradation mechanisms involved in ageing. On that purpose, the physico-chemical characteristics as well as the surface state and the mechanical properties of the Twaron 1000 fibres have been followed at different ageing times.
Securin and Separase Modulate Membrane Traffic by Affecting Endosomal Acidification

Securin and separase play a key role in sister chromatid separation during anaphase. However, a growing body of evidence suggests that in addition to regulating chromosome segregation, securin and separase display functions implicated in membrane traffic in Caenorhabditis elegans and Drosophila. Here we show that in mammalian cells both securin and separase associate with membranes and that depletion of either protein causes robust swelling of the trans‐Golgi network (TGN) along with the appearance of large endocytic vesicles in the perinuclear region. These changes are accompanied by diminished constitutive protein secretion as well as impaired receptor recycling and degradation. Unexpectedly, cells depleted of securin or separase display defective acidification of early endosomes and increased membrane recruitment of vacuolar (V‐) ATPase complexes, mimicking the effect of the specific V‐ATPase inhibitor Bafilomycin A1. Taken together, our findings identify a new functional role of securin and separase in the modulation of membrane traffic and protein secretion that implicates regulation of V‐ATPase assembly and function.
Adaptation of sympatric Achromatium spp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria.

Changes in the abundance of sympatric Achromatium spp. in response to the artificial manipulation of redox conditions in sediment microcosms was determined by fluorescence in situ hybridization (FISH). Adaptation to different redox conditions was shown to be one mechanism that supported the coexistence of functionally similar Achromatium spp. In sediment microcosms, in which the overlying water was oxygenated, Achromatium community size and composition remained unchanged over time. However, imposition of anoxic conditions induced changes in community structure. Anoxia caused a reduction in the relative abundance of Achromatium sp. RY8 (72 +/- 4% to 49 +/- 2%) and an increase in Achromatium sp. RY5 (19 +/- 5% to 32 +/- 3%) and a newly identified Achromatium sp. , RYKS (14 +/- 4% to 27 +/- 2%). In anoxic microcosms supplemented with a single addition of nitrate at different initial concentrations the relative decline in Achromatium sp. RY8 was dependent on the initial nitrate concentration. In these experiments nitrate was rapidly removed. In contrast, when high levels of nitrate were maintained by periodic replacement of the overlying water with nitrate supplemented anoxic water, the composition of the Achromatium community remained stable over time. This suggested that all of the coexisting Achromatium spp. are obligate or facultative anaerobes, but, Achromatium sp. RY8 was more sensitive to sediment redox conditions than the other Achromatium species. Given the heterogeneous nature of sedimentary environments, redox-related niche differentiation may promote coexistence of sympatric Achromatium spp.
Nasal cytokines in common cold and allergic rhinitis

Coronavirus‐induced common cold and allergen‐induced rhinitis are characterized by nasal mucosal exudation of bulk blood plasma. The mucosal exudation process involves ‘flooding’ of the lamina propria with plasma‐derived binding proteins and it is possible that subepithelial inflammatory cytokines and mediators may be moved by the exudate to the mucosal surface. In this study, we have analysed cytokine levels in nasal lavage (NAL) fluids from non‐allergic subjects inoculated with coronavirus (n= 20) and from subjects with allergic (birch pollen) rhinitis subjected to additional allergen challenge (samples were obtained 35min post challenge) in the laboratory (n= 10). Ten of the 20 inoculated subjects developed common cold and 10 remained healthy. Interferon‐γ (IFN‐γ), interleukin‐1β (IL‐1β), granulocyte‐macrophage colony‐stimulating factor (GM‐CSF), IL‐4, and IL‐6 were analysed in unprocessed NAL fluids using immunoassays. The subjects who developed common cold had increased NAL fluid levels of IFNγ (P < 0.05) that correlated well with the symptoms (P < 0.001). IFNγ did not increase in subjects with allergic rhinitis. IL‐1β levels were similar in NAL fluids obtained from all inoculated subjects. In the subjects with allergic rhinitis NAL fluid levels of both IL‐1β and GM‐CSF were increased (P < 0.05). GM‐CSF was not detected in common cold. IL‐4 and IL‐6 were not detectable in any of the NAL fluids. The present cytokines may not only emanate from superficial mucosal cells. By aiding plasma exudation subepithelial cytokines may potentially also be retrieved on the mucosal surface. Our study provides original in vivo data supporting the notion that a TH‐1 profile of cytokines, notably IFNγ, is present in viral infection and further supporting the view that GM‐CSF is an important cytokine in allergic airways disease.
Rheology and microstructure of complex fluids: dispersions, emulsions and polymer solutions

The rheology and microstructure of complex fluids are intimately related, and this relationship is explored to gain a deeper understanding of the physics of colloidal dispersions, emulsions and polymer solutions. The nonequilibrium microstructure and rheological properties of dispersions in steady, simple shear flow are calculated by solving the Smoluchowski equation as a function of dimensionless shear rate. The particles have a purely repulsive interaction with an hydrodynamic radius, a, and a thermodynamic radius, b. For hard spheres, b/a --> l, shear thinning is caused by a decrease in the Brownian contribution since Brownian motion becomes less important with increasing shear. Shear thickening occurs because of an increase in the hydrodynamic viscosity caused by the increased probability of finding particles near contact with increasing shear when particles hydrodynamically interact. The first normal stress difference changes sign since Brownian and hydrodynamic contributions have opposite signs, while the second normal stress difference is always negative. Scaling arguments are made to extend these dilute results for concentrated dispersions. Similar calculations and analyses are performed to study the effects of hydrodynamic interactions and varying b/a ratios on rheology and microstructure. Scaling arguments for the volume-fraction dependence of the bulk stress of emulsions at the critical capillary number are presented along with experimental evidence using an unstabilized emulsion of polymerized castor oil dispersed in polydimethylsiloxane. It is shown that the droplet contribution to both the relative shear viscosity and first normal stress difference is linear in volume fraction for a given viscosity ratio for dilute to moderately-concentrated emulsions in steady, simple shear flow. Stress jump measurements are performed for the first tune for (i) shear startup and (ii) polymer solutions in shear. The startup viscosity of a polymer solution of polyacrylamide in fructose-water at equilibrium is equal to the measured high frequency dynamic viscosity, as expected, since both methods measure the viscous contribution to the viscosity associated with the equilibrium microstructure. Since polymer solutions exhibit stress jumps different from the solvent viscosity, effects of shear on the hydrodynamic viscosity can be investigated.
Atomistic simulation of dislocation emission in nanosized grain boundaries

The present work deals with the atomic mechanism responsible for the emission of partial dislocations from grain boundaries (GB) in nanocrystalline metals. It is shown that, in a 12 nm grain-size sample, GBs containing grain-boundary dislocations (GBDs) can emit a partial dislocation during deformation by local atomic shuffling and stress-assisted free-volume migration. As in previous work, the nucleation occurs at a GBD, which, upon nucleation and propagation, is removed. In the present case, free-volume migration occurs away from the nucleation region both before and after the nucleation event.
Alcohol withdrawal syndrome in critically ill patients: Protocolized versus nonprotocolized management

BACKGROUND Approximately 18% to 25% of patients with alcohol use disorders admitted to the hospital develop alcohol withdrawal syndrome (AWS). Symptom-triggered dosing of benzodiazepines (BZDs) seems to lead to shorter courses of treatment, lower cumulative BZD dose, and more rapid control of symptoms in non–critically ill patients. This study compares the outcomes of critically ill patients with AWS when treated using a protocolized, symptom-triggered, dose escalation approach versus a nonprotocolized approach. METHODS This is a retrospective pre-post study of patients 18 years or older with AWS admitted to an intensive care unit (ICU). The preintervention cohort (PRE) was admitted between February 2008 and February 2010. The postintervention cohort (POST) was admitted between February 2012 and January 2013. The PRE patients were treated by physician preference and compared with POST patients who were given escalating doses of BZDs and/or phenobarbital according to an AWS protocol, titrating to light sedations (Richmond Agitation Sedation Scale score of 0 to −2). RESULTS There were 135 episodes of AWS in 132 critically ill patients. POST patients (n = 75) were younger (50.7 [13.8] years vs. 55.7 [8.7] years, p = 0.03) than PRE patients (n = 60). Sequential Organ Failure Assessment (SOFA) scores were higher in the PRE group (6.1 [3.7] vs. 3.9 [2.9], p = 0.0004). There was a significant decrease in mean ICU length of stay from 9.6 (10.5) days to 5.2 (6.4) days (p = 0.0004) in the POST group. The POST group also had significantly fewer ventilator days (5.6 [13.9] days vs. 1.31 [5.6] days, p < 0.0001) as well as a significant decrease in BZD use (319 [1,084] mg vs. 93 [171] mg, p = 0.002). There were significant differences between the two cohorts with respect to the need for continuous sedation (p < 0.001), duration of sedation (p < 0.001), and intubation secondary to AWS (p < 0.001). In all of these outcomes, the POST cohort had a notably lower frequency of occurrence. CONCLUSION A protocolized treatment approach of AWS in critically ill patients involving symptom-triggered, dose escalations of diazepam and phenobarbital may lead to a decreased ICU length of stay, decreased time spent on mechanical ventilation, and decreased BZD requirements. LEVEL OF EVIDENCE Epidemiologic study, level III; therapeutic study, level IV.
Expression of the C-C chemokine receptor 5 in human kidney diseases.

BACKGROUND Chemokines are proteins that contribute to the migration of leukocytes to sites of tissue injury. CCR5 is a receptor for the C-C chemokine RANTES, which is expressed in inflammatory kidney diseases and transplant rejection. METHODS In order to study the distribution of CCR5, we developed a series of monoclonal antibodies against human CCR5. These antibodies were then evaluated by flow cytometry, Western blot, and immunohistochemistry on formalin-fixed, paraffin-embedded tonsils. Eighty biopsies from patients with membranous glomerulonephritis (N = 9), IgA nephropathy (N = 10), lupus nephritis (N = 10), membranoproliferative glomerulonephritis (N = 10), acute interstitial nephritis (N = 13), chronic interstitial nephritis (N = 10), acute transplant rejection (N = 9), and chronic transplant rejection (N = 9) were stained for CCR5 and CD3 expression in parallel sections. RESULTS One monoclonal antibody (MC-5) showed a single protein band of approximately 38 kD corresponding to CCR5 in Western blot. By indirect immunohistochemistry, a cell membrane signal was detected exclusively on mononuclear inflammatory cells. All control stainings with an isotype-matched mouse IgG2a were negative. CCR5-positive cells were identified in areas of interstitial infiltration in biopsies of chronic glomerulonephritis, interstitial nephritis, and transplant rejection. The staining of CCR5 showed the same distribution as CD3-positive T cells. In patients with impaired renal function, a significantly higher number of CCR5-positive cells were found as compared with patients with normal renal function. In contrast to the prominence of CCR5-positive cells in the interstitial infiltrate, the number of CCR5-positive cells within the glomeruli was low, even in cases with proliferative glomerulonephritis. No CCR5 expression could be detected on intrinsic cells of glomerular, tubular, or vascular structures. CONCLUSIONS The pattern of CCR5 and CD3 cell infiltration suggests that CCR5-positive T cells may play a role in interstitial processes leading to fibrosis. Further studies are required to define the pathophysiological relevance of these cells in progressive renal diseases.
Analysis of Rigid Extended Object Co-Manipulation by Human Dyads: Lateral Movement Characterization

During co-manipulation involving humans and robots, it is necessary to base robot controllers on human behaviors to achieve comfortable and coordinated movement between the human-robot dyad. In this paper, we describe an experiment between human-human dyads and we record the force and motion data as the leader-follower dyads moved in translation and rotation. The force/motion data was then analyzed for patterns found during lateral translation only. For extended objects, lateral translation and in-place rotation are ambiguous, but this paper determines a way to characterize lateral translation triggers for future use in human-robot interaction. The study has 4 main results. First, interaction forces are apparent and necessary for co-manipulation. Second, minimum-jerk trajectories are found in the lateral direction only for lateral movement. Third, the beginning of a lateral movement is characterized by distinct force triggers by the leader. Last, there are different metrics that can be attributed to determine which dyads moved most effectively in the lateral direction.
Efeito da atividade física no osso normal e na prevenção e tratamento da osteoporose

Osteoporosis has been increasingly diagnosed in women and men worldwide. Although the sexual steroids are important in the genesis of human osteoporosis, it is believed that the lack of physical activity constitutes a risk factor. Physical activity acts on the bone by direct effect via mechanical force, or indirect effect through hormonal factors. However, the mechanism through which physical activity improves the bone mass is not completely known. Sports practice has been increasingly recommended for prevention and even treatment of osteoporosis based on the results that have demonstrated the beneficial effects of physical activity on the bone tissue. The goal of this review is to describe the effects of physical activity in the normal bone tissue and on the osteoporosis prevention and treatment.
Protocadherins, not prototypical: a complex tale of their interactions, expression, and functions

The organization of functional neural circuits requires the precise and coordinated control of cell–cell interactions at nearly all stages of development, including neuronal differentiation, neuronal migration, axon outgrowth, dendrite arborization, and synapse formation and stabilization. This coordination is brought about by the concerted action of a large number of cell surface receptors, whose dynamic regulation enables neurons (and astrocytes) to adopt their proper roles within developing neural circuits. The protocadherins (Pcdhs) comprise a major family of cell surface receptors expressed in the developing vertebrate nervous system whose cellular and developmental roles are only beginning to be elucidated. In this review, we highlight selected recent results in several key areas of Pcdh biology and discuss their implications for our understanding of neural circuit formation and function.
The Structural Basis for Promoter −35 Element Recognition by the Group IV σ Factors

The control of bacterial transcription initiation depends on a primary σ factor for housekeeping functions, as well as alternative σ factors that control regulons in response to environmental stresses. The largest and most diverse subgroup of alternative σ factors, the group IV extracytoplasmic function σ factors, directs the transcription of genes that regulate a wide variety of responses, including envelope stress and pathogenesis. We determined the 2.3-Å resolution crystal structure of the −35 element recognition domain of a group IV σ factor, Escherichia coli σE 4, bound to its consensus −35 element, GGAACTT. Despite similar function and secondary structure, the primary and group IV σ factors recognize their −35 elements using distinct mechanisms. Conserved sequence elements of the σE −35 element induce a DNA geometry characteristic of AA/TT-tract DNA, including a rigid, straight double-helical axis and a narrow minor groove. For this reason, the highly conserved AA in the middle of the GGAACTT motif is essential for −35 element recognition by σE 4, despite the absence of direct protein–DNA interactions with these DNA bases. These principles of σE 4/−35 element recognition can be applied to a wide range of other group IV σ factors.
Affective Factors and Fluent Performance : French Learners ’ Appraisals of L 2 Speech Tasks

The present mixed-methods study examined the role of learner appraisals of speech tasks in L2 French on the fluency of their speech as well as expert rater’s perceptions of their fluency. Forty adult learners in a Canadian immersion programme participated in the study which compared four sources of data: (1) participants’ performances of three narrative tasks differing in their conceptualization and formulation demands, (2) a questionnaire on their interest, task-related anxiety, task motivation, and perceived success in task-completion, (3) an interview in which they elaborated on their perceptions of the tasks, and (4) ratings of their performances by three native speakers. Findings showed the cognitive demands of tasks were associated with learners’ affective responses to tasks as well as objective and subjective measures of performance. Furthermore, task-related anxiety and perceived success in task completion were the most important affective factors associated with fluent task performance, whereas interest and task motivation were correlated with native speakers’ fluency ratings. These results are discussed in terms of how task design and implementation can contribute to enhanced task motivation and performance in the classroom.
Zirconia Implants in Esthetic Areas: 4-Year Follow-Up Evaluation Study

Objectives. The aim is to evaluate the survival and success rates, as well as the marginal bone loss (MBL) and periodontal indexes of zirconia implants positioned in the esthetic jaw areas. Materials and Method. 13 patients were selected and 20 one-piece zirconia implants were used for the rehabilitation of single tooth or partially edentulous ridge in the esthetic jaw areas. Six months after surgery and then once a year, a clinical-radiographic evaluation was performed in order to estimate peri-implant tissue health and marginal bone loss. Results. The survival and success rates were 100%. The average marginal bone loss from baseline to 48 months after surgery was +2.1 mm. Four years after surgery, the median and the mode for visible Plaque Index and Bleeding On Probing resulted 1 whereas Probing Pocket Depth amounted to 3 mm (SD = ±0.49 mm). Conclusion. One-piece zirconia dental implants are characterized by high biocompatibility, low plaque adhesion, and absence of microgap that can be related to the clinical success of these implants even in the esthetic areas.
Postexercise essential amino acid supplementation amplifies skeletal muscle satellite cell proliferation in older men 24 hours postexercise

Aged skeletal muscle has an attenuated and delayed ability to proliferate satellite cells in response to resistance exercise. The mechanistic target of rapamycin complex 1 (mTORC1) signaling pathway is a focal point for cell growth, however, the effect of postexercise mTORC1 activation on human skeletal muscle satellite cell (SC) proliferation is unknown. To test the proliferative capacity of skeletal muscle SC in aging muscle to a potent mTORC1 activator (i.e., EAA; essential amino acids) we recruited older (~72y) men to conduct leg resistance exercise (8setsx10reps) without (−EAA; n = 8) and with (+EAA: n = 11) ingestion of 10 g of EAA 1 h postexercise. Muscle biopsies were taken before exercise (Pre) and 24 h postexercise (Post) for assessment of expression and fiber type‐specific Pax7+ SC, Ki67+Pax7+ SC and MyoD+ SC. −EAA did not show an increase in Pax7+ satellite cells at Post(P > 0.82). Although statistical significance for an increase in Pax7 + SC at 24 h post‐RE was not observed in +EAA versus −EAA, we observed trends for a treatment difference (P < 0.1). When examining the change from Pre to Post trends were demonstrated (#/myofiber: P = 0.076; and %/myonuclei: P = 0.065) for a greater increase in +EAA versus −EAA. Notably, we found an increase SC proliferation in +EAA, but not −EAA with increase in Ki67+ SC and MyoD+ cells (P < 0.05). Ki67+ SC also exhibited a significant group difference Post (P < 0.010). Pax7+ SC in fast twitch myofibers did not change and were not different between groups (P > 0.10). CDK2, MEF2C, RB1 mRNA only increased in +EAA (P < 0.05). Acute muscle satellite cell proliferative capacity may be partially rescued with postexercise EAA ingestion in older men.