Miracle-dz/UniFAR-FTUs huggingface dataset:
Regulation of Neutrophilic Inflammation by Proteinase-Activated Receptor 1 during Bacterial Pulmonary Infection

Neutrophils are key effector cells of the innate immune response to pathogenic bacteria, but excessive neutrophilic inflammation can be associated with bystander tissue damage. The mechanisms responsible for neutrophil recruitment to the lungs during bacterial pneumonia are poorly defined. In this study, we focus on the potential role of the major high-affinity thrombin receptor, proteinase-activated receptor 1 (PAR-1), during the development of pneumonia to the common lung pathogen Streptococcus pneumoniae. Our studies demonstrate that neutrophils were indispensable for controlling S. pneumoniae outgrowth but contributed to alveolar barrier disruption. We further report that intra-alveolar coagulation (bronchoalveolar lavage fluid thrombin–antithrombin complex levels) and PAR-1 immunostaining were increased in this model of bacterial lung infection. Functional studies using the most clinically advanced PAR-1 antagonist, SCH530348, revealed a key contribution for PAR-1 signaling in influencing neutrophil recruitment to lung airspaces in response to both an invasive and noninvasive strain of S. pneumoniae (D39 and EF3030) but that PAR-1 antagonism did not impair the ability of the host to control bacterial outgrowth. PAR-1 antagonist treatment significantly decreased pulmonary levels of IL-1β, CXCL1, CCL2, and CCL7 and attenuated alveolar leak. Ab neutralization studies further demonstrated a nonredundant role for IL-1β, CXCL1, and CCL7 in mediating neutrophil recruitment in response to S. pneumoniae infection. Taken together, these data demonstrate a key role for PAR-1 during S. pneumoniae lung infection that is mediated, at least in part, by influencing multiple downstream inflammatory mediators.
Failure to demonstrate effect of trace concentrations of nitrous oxide and halothane on psychomotor performance.

Progressive visual reaction times were measured before and after exposure of 10 subjects (anaesthetics or anaesthetic technicians) to either halothane 100-150 p.p.m. in air or air alone. There were no significant differences between the control and test situations. In a subsequent study of 15 psychology students using an audiovisual reaction time test, a tachistoscope and the Wechsler memory scale, there was no significant difference in the subjects' responses when breathing either air or a mixture of halothane 15 p.p.m. and nitrous oxide 500 p.p.m. in air (range: halothane 10.3-16.0 p.p.m., nitrous oxide 485-700 p.p.m.).
EMPIRICAL EVIDENCE OF ADVANCED GEOGRAPHIC VISUALIZATION INTERFACE USE

Several advanced visual interface technologies have emerged in the past few years. Interfaces such as immersive virtual environments (VE) and augmented reality (AR) provide unique forms of interaction with spatial data that have often not been empirically investigated in the geographic visualization literature. At the same time as new interfaces emerge, we must develop an understanding of how they influence spatial knowledge acquisition. This requires an integrated approach to studying the relative influence of geographic visualization content, interface affordances, and user context. This paper describes the findings of a recently completed empirical study of how people develop mental models of visual representations of spatial information, mediated by different kinds of geographic visualization content, interface type and user context. The behavior, performance and task responses of individuals using an Augmented Reality (AR) geographic visualization interface were compared to identical activities undertaken by users of a desktop 3D geographic visualization interface. Combining theoretical perspectives and empirical techniques from spatial cognition, interface research, geographic visualization and geographic information science, an array of quantitative and qualitative data were gathered from 101 participants during 250 hours of observation. This work provides evidence that suggests how the combination of visualization content, interface affordances and users may interact to influence the development of spatial knowledge. This may in turn inform how a transformational view of the classification, representation and display of spatial phenomena may be enhanced by a commensurate understanding of how people interact with geographic visualizations to acquire spatial knowledge.
Universal Algorithms for Learning Theory Part I : Piecewise Constant Functions

This paper is concerned with the construction and analysis of a universal estimator for the regression problem in supervised learning. Universal means that the estimator does not depend on any a priori assumptions about the regression function to be estimated. The universal estimator studied in this paper consists of a least-square fitting procedure using piecewise constant functions on a partition which depends adaptively on the data. The partition is generated by a splitting procedure which differs from those used in CART algorithms. It is proven that this estimator performs at the optimal convergence rate for a wide class of priors on the regression function. Namely, as will be made precise in the text, if the regression function is in any one of a certain class of approximation spaces (or smoothness spaces of order not exceeding one -- a limitation resulting because the estimator uses piecewise constants) measured relative to the marginal measure, then the estimator converges to the regression function (in the least squares sense) with an optimal rate of convergence in terms of the number of samples. The estimator is also numerically feasible and can be implemented on-line.
Angiotensin Type 2 Receptor Stimulation Ameliorates Left Ventricular Fibrosis and Dysfunction via Regulation of Tissue Inhibitor of Matrix Metalloproteinase 1/Matrix Metalloproteinase 9 Axis and Transforming Growth Factor &bgr;1 in the Rat Heart

Left ventricular (LV) remodeling is the main reason for the development of progressive cardiac dysfunction after myocardial infarction (MI). This study investigated whether stimulation of the angiotensin type 2 receptor is able to ameliorate post-MI cardiac remodeling and what the underlying mechanisms may be. MI was induced in Wistar rats by permanent ligation of the left coronary artery. Treatment with the angiotensin type 2 receptor agonist compound 21 ( 0.03 mg/kg) was started 6 hours post-MI and continued for 6 weeks. Hemodynamic parameters were measured by echocardiography and intracardiac catheter. Effects on proteolysis were studied in heart tissue and primary cardiac fibroblasts. Compound 21 significantly improved systolic and diastolic functions, resulting in improved ejection fraction (71.2±4.7% versus 53.4±7.0%; P<0.001), fractional shortening (P<0.05), LV internal dimension in systole (P<0.05), LV end-diastolic pressure (16.9±1.2 versus 22.1±1.4 mm Hg; P<0.05), ratio of early (E) to late (A) ventricular filling velocities, and maximum and minimum rate of LV pressure rise (P<0.05). Compound 21 improved arterial stiffness parameters and reduced collagen content in peri-infarct myocardium. Tissue inhibitor of matrix metalloproteinase 1 was strongly upregulated, whereas matrix metalloproteinases 2 and 9 and transforming growth factor &bgr;1 were diminished in LV of treated animals. In cardiac fibroblasts, compound 21 initially induced tissue inhibitor of matrix metalloproteinase 1 expression followed by attenuated matrix metalloproteinase 9 and transforming growth factor &bgr;1 secretion. In conclusion, angiotensin type 2 receptor stimulation improves cardiac function and prevents cardiac remodeling in the late stage after MI, suggesting that angiotensin type 2 receptor agonists may be considered a future pharmacological approach for the improvement of post-MI cardiac dysfunction.
Endothelial dysfunction and cardiorenal injury in experimental salt-sensitive hypertension: effects of antihypertensive therapy.

BACKGROUND Pharmacological control of hypertension has contributed to a significant decrease in cardiovascular morbidity and mortality, although the beneficial effect on cardiac and renal diseases has been far more modest than the reduction in stroke. The endothelium plays a crucial homeostatic role in the regulation of vascular tone thrombogenesis and vascular remodeling. We studied the relationship between endothelial dysfunction and cardiorenal injury in hypertensive rats and evaluated the effects of two classes of antihypertensive agents commonly used in the clinical setting, a diuretic (DIU) and an ACE inhibitor (CEI). METHODS AND RESULTS Dahl salt-sensitive rats (DS) given high dietary salt (4% NaCl) developed hypertension (systolic blood pressure [SBP], 218+/-9 versus 147+/-3 mm Hg in DS given 0.5% NaCl; P<.001), which was associated with impaired endothelium-dependent relaxations (EDRs) in aortic rings (ED50, 5.44+/-.18 versus 7.51+/-.10; P<.05) and mesenteric vessels (area under the curve, 299+/-11 versus 217+/-11 arbitrary units; P<.05). Hypertensive DS also demonstrated depressed nitric oxide synthase activity in the aorta (0.76+/-.15 versus 2.83+/-.17 nmol x min(-1) x g protein(-1); P<. 05), left ventricular hypertrophy (0.43+/-.02 versus 0.29+/-.02 g ventricular weight/100 g body weight; P<.05), glomerular injury (histological injury score: 151+/-8 versus 11+/-2; P<.05), and increased urinary protein excretion (95+/-21 versus 25+/-5 mg/24 hours; P<.05). Treatment of DS rats with the CEI perindopril (4.56 mg x kg(-1) x d(-1)) did not affect SBP (225+/-6 mm Hg) but modestly improved EDR (ED50: 6.07+/-.37; P<.05 versus hypertensive DS) as well as proteinuria and glomerular histology. Addition of the DIU indapamide (1.44 mg x kg(-1) x d(-1)) normalized SBP (151+/-2 mm Hg; P<.05), EDR (ED50, 7.33+/-.08; P<.05), left ventricular hypertrophy (0.27+/-.01 g/100 g body weight; P<.05), and proteinuria (31+/-4 mg/24 hours; P<.05) and prevented glomerular injury (injury score: 30+/-2; P<.05). Monotherapy with DIU reduced SBP (175+/-3 mm Hg; P<.05) and normalized EDR and left ventricular hypertrophy but did not provide effective renal protection. In hypertensive DS, impaired EDR and left ventricular hypertrophy were positively correlated with SBP. In addition, we found a significant correlation between cardiac hypertrophy and endothelial dysfunction. Indeed, a hierarchical regression analysis revealed that impaired aortic EDR, and therefore decreased aortic compliance, positively contributed to left ventricular hypertrophy in addition to but independently of SBP [F(2,37)=6.29; P=. 004]. CONCLUSIONS These studies suggest a dissociation of the endothelial, cardiac, and renal effects of antihypertensive therapy in hypertension and may explain the variable success of antihypertensive regimens in treating hypertension while preventing cardiac and renal damage.
Analysis of Realistic Ultrawideband Indoor Communication Channels by Using an Efficient Ray-Tracing Based Method

A fundamental step in ultrawideband (UWB) communication system design involves the characterization of the indoor propagation channel. In this paper, we show that the UWB propagation channel parameters can be accurately predicted by employing ray tracing (RT) simulation carried out at various frequencies over the signal bandwidth. It is important to note that the determination of the rays reaching a given location is made only once, as the RT algorithm is independent of frequency. A parallel ray approximation (PRA) is used to significantly improve the computational efficiency of the RT based method. Moreover the accuracy of the approximation is verified through a measurement campaign.
Multiple Oncogenic Pathway Signatures Show Coordinate Expression Patterns in Human Prostate Tumors

Background Gene transcription patterns associated with activation of oncogenes Myc, c-Src, beta-catenin, E2F3, H-Ras, HER2, EGFR, MEK, Raf, MAPK, Akt, and cyclin D1, as well as of the cell cycle and of androgen signaling have been generated in previous studies using experimental models. It was not clear whether genes in these “oncogenic signatures” would show coordinate expression patterns in human prostate tumors, particularly as most of the signatures were derived from cell types other than prostate. Principal Findings The above oncogenic pathway signatures were examined in four different gene expression profile datasets of human prostate tumors (representing ∼250 patients in all), using both Q1-Q2 and one-sided Fisher's exact enrichment analysis methods. A significant fraction (∼5%) of genes up-regulated experimentally by Myc, c-Src, HER2, Akt, or androgen were co-expressed in human tumors with the oncogene or biomarker corresponding to the pathway signature. Genes down-regulated experimentally, however, did not show anticipated patterns of anti-enrichment in the human tumors. Conclusions Significant subsets of the genes in these experimentally-derived oncogenic signatures are relevant to the study of human prostate cancer. Both molecular biologists and clinical researchers could focus attention on the relatively small number of genes identified here as having coordinate patterns that arise from both the experimental system and the human disease system.
Nanog Dynamics in Mouse Embryonic Stem Cells: Results from Systems Biology Approaches

Mouse embryonic stem cells (mESCs), derived from the inner cell mass of the blastocyst, are pluripotent stem cells having self-renewal capability and the potential of differentiating into every cell type under the appropriate culture conditions. An increasing number of reports have been published to uncover the molecular mechanisms that orchestrate pluripotency and cell fate specification using combined computational and experimental methodologies. Here, we review recent systems biology approaches to describe the causes and functions of gene expression heterogeneity and complex temporal dynamics of pluripotency markers in mESCs under uniform culture conditions. In particular, we focus on the dynamics of Nanog, a key regulator of the core pluripotency network and of mESC fate. We summarize the strengths and limitations of different experimental and modeling approaches and discuss how various strategies could be used.
The linear power spectrum of observed source number counts

We relate the observable number of sources per solid angle and redshift to the underlying proper source density and velocity, background evolution and line-of-sight potentials. We give an exact result in the case of linearized perturbations assuming general relativity. This consistently includes contributions of the source density perturbations and redshift distortions, magnification, radial displacement, and various additional linear terms that are small on sub-horizon scales. In addition we calculate the effect on observed luminosities, and hence the result for sources observed as a function of flux, including magnification bias and radial-displacement effects. We give the corresponding linear result for a magnitude-limited survey at low redshift, and discuss the angular power spectrum of the total count distribution. We also calculate the cross-correlation with the CMB polarization and temperature including Doppler source terms, magnification, redshift distortions and other velocity effects for the sources, and discuss why the contribution of redshift distortions is generally small. Finally we relate the result for source number counts to that for the brightness of line radiation, for example 21-cm radiation, from the sources.
Retrospective evaluation of bone pain palliation after samarium-153-EDTMP therapy.

PURPOSE The aim of this study was to evaluate the degree of metastatic bone pain palliation and medullar toxicity associated with samarium-153-EDTMP treatment. METHODS Seventy-three patients with metastatic bone pain having previously undergone therapy with samarium-153-EDTMP (1 mCi/kg) were retrospectively evaluated. Routine follow-up included pain evaluation and blood counts for 2 months after treatment. Pain was evaluated using a subjective scale (from 0 to 10) before and for 8 weeks after the treatment. Blood counts were obtained before treatment and once a week for 2 months during follow-up. Dosimetry, based upon the urinary excretion of the isotope, was estimated in 41 individuals, and the resulting radiation absorbed doses were correlated with hematological data. RESULTS Reduction in pain scores of 75% to 100% was obtained in 36 patients (49%), with a decrease of 50% to 75%, 25% to 50%, and 0% to 25% in, respectively, 20 (27%), 10 (14%), and 7 (10%) patients. There was no significant relationship between the pain response and location of the primary tumor (breast or prostate cancer). Mild to moderate myelosuppression was noted in 75.3% of patients, usually with hematological recovery at 8 weeks. The mean bone marrow dose was 347 +/- 65 cGy, and only a weak correlation was found between absorbed dose and myelosuppression (Pearson coefficient = .4). CONCLUSIONS Samarium-153-EDTMP is a valuable method for metastatic bone pain palliation. A mild to moderate and transitory myelosuppression is the main toxicity observed after samarium therapy, showing a weak correlation with dosimetric measures.
Effects of Dioxins and Polychlorinated Biphenyls on Thyroid Hormone Status of Pregnant Women and Their Infants

ABSTRACT: Dioxins [polychlorinated dibenzo-p-dioxins (PCDD), dibenzofurans (PCDF)] and polychlorinated biphenyls (PCB) are potentially hazardous compounds. Animal studies have demonstrated that PCDD, PCDF, and PCB can alter thyroid hormone homeostasis. We investigated thyroid hormone levels in 105 mother-infant pairs. To estimate maternal and infant exposure, four nonplanar PCB congeners were measured in maternal plasma during the last month of pregnancy and in umbilical cord plasma. Seventeen PCDD and PCDF congeners, three planar PCB congeners, and 23 nonplanar PCB congeners were measured in human milk. Higher PCDD, PCDF, and PCB levels in human milk, expressed as toxic equivalents, correlated significantly with lower plasma levels of maternal total triiodothyronine and total thyroxine, and with higher plasma levels of TSH in the infants in the 2nd wk and 3rd mo after birth. Infants exposed to higher toxic equivalents levels had also lower plasma free thyroxine and total thyroxine levels in the 2nd wk after birth. We conclude that elevated levels of dioxins and PCB can alter the human thyroid hormone status.
Effect of Oleamide on Sleep and Its Relationship to Blood Pressure, Body Temperature, and Locomotor Activity in Rats

Oleamide (cis-9,10-octadecenoamide) is a brain lipid that has recently been isolated from the cerebral fluid of sleep-deprived cats. Intracerebroventricular and intraperitoneal administration of oleamide induces sleep in rats. However, it is unclear whether oleamide's hypnogenic effects are mediated, in part, by its actions on blood pressure and core body temperature. Here we show that systemic administration of oleamide (10 and 20 mg/kg) in rats increased slow-wave sleep 2, without affecting blood pressure and heart rate. In addition, oleamide decreased body temperature and locomotor activity in a dose-dependent manner. These latter effects were not correlated in time with the observed increases in slow-wave sleep. These data suggest that the hypnogenic effects of oleamide are not related to changes in blood pressure, heart rate, or body temperature.
Comparative Genomics Revealed Genetic Diversity and Species/Strain-Level Differences in Carbohydrate Metabolism of Three Probiotic Bifidobacterial Species

Strains of Bifidobacterium longum, Bifidobacterium breve, and Bifidobacterium animalis are widely used as probiotics in the food industry. Although numerous studies have revealed the properties and functionality of these strains, it is uncertain whether these characteristics are species common or strain specific. To address this issue, we performed a comparative genomic analysis of 49 strains belonging to these three bifidobacterial species to describe their genetic diversity and to evaluate species-level differences. There were 166 common clusters between strains of B. breve and B. longum, whereas there were nine common clusters between strains of B. animalis and B. longum and four common clusters between strains of B. animalis and B. breve. Further analysis focused on carbohydrate metabolism revealed the existence of certain strain-dependent genes, such as those encoding enzymes for host glycan utilisation or certain membrane transporters, and many genes commonly distributed at the species level, as was previously reported in studies with limited strains. As B. longum and B. breve are human-residential bifidobacteria (HRB), whereas B. animalis is a non-HRB species, several of the differences in these species' gene distributions might be the result of their adaptations to the nutrient environment. This information may aid both in selecting probiotic candidates and in understanding their potential function as probiotics.
Assessing the Suitability of Future Multi- and Hyperspectral Satellite Systems for Mapping the Spatial Distribution of Norway Spruce Timber Volume

The availability of accurate and timely information on timber volume is important for supporting operational forest management. One option is to combine statistical concepts (e.g., small area estimates) with specifically designed terrestrial sampling strategies to provide estimations also on the level of administrative units such as forest districts. This may suffice for economic assessments, but still fails to provide spatially explicit information on the distribution of timber volume within these management units. This type of information, however, is needed for decision-makers to design and implement appropriate management operations. The German federal state of Rhineland-Palatinate is currently implementing an object-oriented database that will also allow the direct integration of Earth observation data products. This work analyzes the suitability of forthcoming multi- and hyperspectral satellite imaging systems for producing local distribution maps for timber volume of Norway spruce, one of the most economically important tree species. In combination with site-specific inventory data, fully processed hyperspectral data sets (HyMap) were used to simulate datasets of the forthcoming EnMAP and Sentinel-2 systems to establish adequate models for estimating timber volume maps. The analysis included PLS regression and the k-NN method. Root Mean Square Errors between 21.6% and 26.5% were obtained, where k-NN performed slightly better than PLSR. It was concluded that the datasets of both simulated sensor systems fulfill accuracy requirements to support local forest management operations and could be used in synergy. Sentinel-2 can provide meaningful volume distribution maps in higher geometric resolution, while EnMAP, due to its hyperspectral coverage, can contribute complementary information, e.g., on biophysical conditions.
Force Field Energy Functionals for Image Feature Extraction

The overall objective in defining feature space is to reduce the dimensionality of pattern space yet maintaining discriminatory power for classification and invariant description. To meet this objective, in the context of ear biometrics, a novel force field transformation has been developed in which the image is treated as an array of Gaussian attractors that act as the source of a force field. The directional properties of the force field are exploited to automatically locate the extrema of a small number of potential energy wells and associated potential channels. These form the basis of the ear description. This has been applied to a small database of ears and initial results show that the new approach has suitable performance attributes and shows promising results in automatic ear recognition.