Miracle-dz/UniFAR-FTUs huggingface dataset:
[Association of hepatic iron deposition and serum iron indices with hepatic inflammation and fibrosis stage in nonalcoholic fatty liver disease].

BACKGROUND/AIMS Nonalcoholic steatohepatitis can develop from nonalcoholic fatty liver and progress to severe liver disease such as cirrhosis. The mechanism determining the progression from fatty liver to steatohepatitis is unknown. Iron is suspected to enhance hepatic damage associated with nonalcoholic fatty liver disease (NAFLD). The aims of this study were to evaluate the relationship of serum iron indices and hepatic iron deposition with hepatic fibrosis or inflammation, and to assess whether the increased hepatic iron deposition is an independent predictor of progression to liver injury. METHODS The biochemical and histopathological data of thirty-nine patients with NAFLD were analyzed. Liver biopsy findings were graded according to the method described by Brunt, et al. Hepatic iron concentration was available in 29 of 39 patients. RESULTS The mean hepatic iron concentration and hepatic iron indices were 1,349+/-1,188 microg/g dry weight and 0.9+/-0.7 microg/g/age. Serum ferritin and body mass indices were associated with hepatic inflammation (p=0.001, p=0.006) and fibrosis (p=0.005, p=0.013). Hepatic iron concentration and hepatic iron index were not associated with hepatic inflammation and fibrosis. Multivariate analysis did not identify serum ferritin or body mass index as an independent predictor of liver injury. CONCLUSIONS Hepatic iron deposition shows no association with the degree of hepatic inflammation or fibrosis. Hepatic iron is not an independent predictor of hepatic injury in patients with NAFLD.
The Direct Detection of Lyman Continuum Emission from Star-forming Galaxies at z~3

We present the results of rest-frame UV spectroscopic observations of a sample of 14 z ~ 3 star-forming galaxies in the SSA 22a field. These spectra are characterized by unprecedented depth in the Lyman continuum region. For the first time, we have detected escaping ionizing radiation from individual galaxies at high redshift, with 2 of the 14 objects showing significant emission below the Lyman limit. We also measured the ratio of emergent flux density at 1500 Å to that in the Lyman continuum region, for the individual detections (C49 and D3) and the sample average. If a correction for the average IGM opacity is applied to the spectra of the objects C49 and D3, we find f1500/f900,corr,C49 = 4.5 and f1500/f900,corr,D3 = 2.9. The average emergent flux density ratio in our sample is ⟨f1500/f900,corr⟩ = 22, implying an escape fraction ~4.5 times lower than inferred from the composite spectrum from Steidel and coworkers. If this new estimate is representative of LBGs, their contribution to the metagalactic ionizing radiation field is Jν(900) ~ 2.6 × 10-22 ergs s-1 cm-2 Hz-1 sr-1, comparable to the contribution of optically selected quasars at the same redshift. The sum of the contributions from galaxies and quasars is consistent with recent estimates of the level of the ionizing background at z ~ 3, inferred from the H I Lyα forest optical depth. There is significant variance among the emergent far-UV spectra in our sample, yet the factors controlling the detection or nondetection of Lyman continuum emission from galaxies are not well determined. Because we do not yet understand the source of this variance, significantly larger samples will be required to obtain robust constraints on the galaxy contribution to the ionizing background at z ~ 3 and beyond.
Rapid hydrophobic grid membrane filter-enzyme-labeled antibody procedure for identification and enumeration of Escherichia coli O157 in foods

An O-antigen-specific monoclonal antibody, labeled by horseradish peroxidase-protein A, was used in a hydrophobic grid membrane filter-enzyme-labeled antibody method for rapid detection of Escherichia coli O157 in foods. The method yielded presumptive identification within 24 h and recovered, on average, 95% of E. coli O157:H7 artificially inoculated into comminuted beef, veal, pork, chicken giblets, and chicken carcass washings. In food samples from two outbreaks involving E. coli O157:H7, the organism was isolated at levels of up to 10(3)/g. The lower limit of sensitivity was 10 E. coli O157 per g of meat. Specific typing for E. coli O157:H7 can be achieved through staining with labeled H7 antiserum or tube agglutination.
Histology and ultrastructure of male mullerian gland of Uraeotyphlus narayani (Amphibia: Gymnophiona)

This study reports the anatomy, histology, and ultrastructure of the male Mullerian gland of the caecilian Uraeotyphlus narayani, based on dissections, light microscopic histological and histochemical preparations, and transmission electron microscopic observations. The posterior end of the Mullerian duct and the urinogenital duct of this caecilian join to form a common duct before opening into the cloaca. The boundary of the entire gland has a pleuroperitoneum, followed by smooth muscle fibers and connective tissue. The Mullerian gland is composed of numerous individual tubular glands separated from each other by connective tissue. Each gland has a duct, which joins the central Mullerian duct. The ducts of the tubular glands are also surrounded by abundant connective tissue. The tubular glands differ between the column and the base in regard to the outer boundary and the epithelial organization. The basement membrane of the column is so thick that amoeboid cells may not penetrate it, whereas that around the base of the gland is thin and appears to allow migration of amoeboid cells into and out of the basal aspect of the gland. The epithelium of the column has nonciliated secretory cells with basal nuclei and ciliated nonsecretory cells with apical nuclei. In the epithelium of the base there are secretory cells, ciliated cells, and amoeboid cells. The epithelium of ducts of the tubular glands is formed of ciliated dark cells and microvillated light cells. The epithelium of the central duct is formed of ciliated dark cells also possessing microvilli, ciliated light cells also possessing microvilli, and microvillated light cells that lack cilia. It is regressed during March to June when the testis lobes are in a state of quiescence. The Mullerian gland is active in secretion during July to February when the testis is active in spermatogenesis. J. Morphol. 260:33–56, 2004. © 2004 Wiley‐Liss, Inc.
Synchronization of Timing and Motion Among Performing Musicians

WE INVESTIGATED INFLUENCES OF AUDITORY FEEDBACK, musical role, and note ratio on synchronization in ensemble performance. Pianists performed duets on a piano keyboard; the pianist playing the upper part was designated the leader and the other pianist was the follower. They received full auditory feedback, one-way feedback (leaders heard themselves while followers heard both parts), or self-feedback only. The upper part contained more, fewer, or equal numbers of notes relative to the lower part. Temporal asynchronies increased as auditory feedback decreased: The pianist playing more notes preceded the other pianist, and this tendency increased with reduced feedback. Interonset timing suggested bidirectional adjustments during full feedback despite the leader/follower instruction, and unidirectional adjustment only during reduced feedback. Motion analyses indicated that leaders raised fingers higher and pianists9 head movements became more synchronized as auditory feedback was reduced. These findings suggest that visual cues became more important when auditory information was absent.
Prognostic value of myocardial ischemia and viability in patients with chronic left ventricular ischemic dysfunction.

BACKGROUND Previous studies showed that thallium scintigraphy and dobutamine echocardiography were accurate, noninvasive ways of predicting contractile recovery after revascularization in patients with left ventricular (LV) dysfunction. However, the prognostic impact of such methods remains uncertain. METHODS AND RESULTS We prospectively studied 137 consecutive patients with coronary disease and LV dysfunction who underwent exercise-redistribution-reinjection thallium scintigraphy and dobutamine echocardiography to identify myocardial ischemia and viability. A total of 94 patients subsequently underwent revascularization, and 43 underwent medical treatment. The primary endpoint was cardiac mortality, and mean follow-up was 33+/-10 months. Twenty-four patients died of cardiac causes. By Cox's regression analysis, long-term survival was related to the extent of coronary disease, the presence of diabetes, type of treatment, the presence of ischemic myocardium as determined by thallium scintigraphy, and the presence of viable myocardium as determined by both tests. Three-year survival was greater in patients with ischemic myocardium (as determined by thallium scintigraphy) or viable myocardium (as determined by both tests) who underwent revascularization than in the other groups (P=0.018 with thallium; P<0.001 with dobutamine). Subgroup analyses indicated that among patients with 1- or 2-vessel disease, only those with ischemic or viable myocardium improved survival after revascularization, whereas in patients with 3-vessel or left main diseases, revascularization always improved survival, albeit more in the presence of ischemic or viable myocardium. CONCLUSIONS Among the parameters commonly available in patients with LV ischemic dysfunction, the presence of ischemic myocardium (as determined by thallium scintigraphy) and that of viable myocardium (as determined by dobutamine echocardiography) are independent predictors of subsequent mortality. These observations may be useful in the preoperative selection of patients for revascularization.
Repair of complete bilateral cleft lip with severely protruding premaxilla performing a premaxillary setback and vomerine ostectomy in one stage surgery

Background The authors present a technique for selected cases of CBCL. The primary repair of the CBCL with a severely protruding premaxilla in one stage surgery is very difficult, essentially because a good muscular apposition is difficult, forcing synchronously to do a premaxillary setback to facilitate subsequent bilateral lip repair and, thus, achieving satisfactory results. We achieve this by a reductive ostectomy on the vomero-premaxillary suture. Material and Methods 4 patients with CBCL and severely protruding premaxilla underwent premaxillary setback by vomerine ostectomy at the same time of lip repair in the past 24 months. The extent of premaxillary setback varied between 9 and 16 mm. The required amount of bone was removed anterior to the vomero-premaxillary suture. The authors did an additional simultaneous gingivoperiosteoplasty in all patients, achieving an enough stability of the premaxilla in its new position, to be able to close the alveolar gap bilaterally. The authors have examined the position of premaxilla and dental arch between 6 and 24 months. We did not do the primary nose correction, because this increased the risk of impairment of the already compromised vascularity of the philtrum and premaxilla. Results The follow-up period ranged between 6 and 24 months. None of the patients had any major complication. During follow-up, the premaxilla was minimally mobile. We achieved a good lip repair in all cases: adequate muscle repair, symmetry of the lip, prolabium and Cupid’s bow, as well as good scars. Conclusions To our knowledge, there are few reports of one stage surgery with vomerine ostectomy to repair CBCL with severely protruding premaxilla. Doing this vomerine ostectomy, we don’t know how it will affect the subsequent growth of the premaxila and restrict the natural maxillary growth. Applying this alternative treatment for children with CBCL and protruded premaxilla without any preoperative orthopedic, we can successfully perform, in a single-stage surgery, a good primary lip repair at our center. Further confirmations of this surgery with follow up and anthropometric studies of these patients during childhood and adolescence are required. Key words: Protruding premaxilla, bilateral cleft lip, vomerine ostectomy, one stage surgery, Millard II technique.
Cutting Edge: Eotaxin Elicits Rapid Vesicular Transport-Mediated Release of Preformed IL-4 from Human Eosinophils1

IL-4 release is important in promoting Th2-mediated allergic and parasitic immune responses. Although human eosinophils are potential sources of IL-4, physiologic mechanisms to elicit its release have not been established. By flow cytometry and microscopy, eosinophils from normal donors uniformly contained preformed IL-4. In contrast to cytolytic IL-4 release from calcium ionophore-activated eosinophils, eotaxin and RANTES, but not IFN-γ, elicited IL-4 release by noncytotoxic mechanisms. With a dual Ab capture and detection immunofluorescent microscopic assay, IL-4 was released at discrete cell surface sites. IL-5 enhanced eotaxin-induced IL-4 release, which was mediated by G protein-coupled CCR3 receptors, detectable as early as 5 min and maximum within 1 h. IL-4 release was not diminished by transcription or protein synthesis inhibitors, but was suppressed by brefeldin A, an inhibitor of vesicle formation. Thus, CCR3-mediated signaling can rapidly mobilize IL-4 stored preformed in human eosinophils for release by vesicular transport to contribute to immune responses.
The accumulation of MMS-induced single strand breaks in G1 phase is recombinogenic in DNA polymerase β defective mammalian cells

DNA polymerase (Pol) beta null mouse embryonic fibroblasts provide a useful cell system to investigate the effects of alterations in base excision repair (BER) on genome stability. These cells are characterized by hypersensitivity to the cytotoxic effects of methyl methanesulfonate (MMS) and by decreased repair of the MMS-induced DNA single strand breaks (SSB). Here, we show that, in the absence of Pol beta, SSB accumulate in G1 phase cells, accompanied by the formation of proliferating cell nuclear antigen foci in the nuclei. When replicating Pol beta null cells are treated with MMS, a rapid phosphorylation of histone H2AX is detected in the nuclei of S phase cells, indicating that double strand breaks (DSB) are formed in response to unrepaired SSB. This is followed by relocalization within the nuclei of Rad51 protein, which is essential for homologous recombination (HR). These findings are compatible with a model where, in mammalian cells, unrepaired SSB produced during BER are substrates for the HR pathway via DSB formation. This is an example of a coordinated effort of two different repair pathways, BER and HR, to protect mammalian cells from alkylation-induced cytotoxicity.
Experimental test of predation's effect on divergent selection during character displacement in sticklebacks

Ecological character displacement is common in nature but the mechanisms causing divergence are not well understood. The contributions of ecological interactions other than competition have received little attention. We conducted a pond experiment to explore the contribution of both competition and predation to character divergence in threespine stickleback species. We estimated the strength of divergent selection on a morphologically intermediate target population between competition treatments under two alternate predation treatments. Divergent selection on the target population tended to be stronger in the predator-addition treatment than in the predator-reduction treatment, a difference that approached significance (P = 0.09). This trend occurred even though competition was strongest in the predator-reduction treatment. Overall, the strength of divergent selection was best predicted by stickleback mortality (P = 0.025) being strongest where mortality was highest. These results indicate that predation and other agents of mortality can enhance the rate of change in competition per unit of phenotypic divergence and, thereby, divergent selection, even as they lower the overall strength of competition. In this way, predation and other agents of mortality may facilitate, rather than hinder, character displacement.
NetView: A High-Definition Network-Visualization Approach to Detect Fine-Scale Population Structures from Genome-Wide Patterns of Variation

High-throughput sequencing and single nucleotide polymorphism (SNP) genotyping can be used to infer complex population structures. Fine-scale population structure analysis tracing individual ancestry remains one of the major challenges. Based on network theory and recent advances in SNP chip technology, we investigated an unsupervised network clustering method called Super Paramagnetic Clustering (Spc). When applied to whole-genome marker data it identifies the natural divisions of groups of individuals into population clusters without use of prior ancestry information. Furthermore, we optimised an analysis pipeline called NetView, a high-definition network visualization, starting with computation of genetic distance, followed clustering using Spc and finally visualization of clusters with Cytoscape. We compared NetView against commonly used methodologies including Principal Component Analyses (PCA) and a model-based algorithm, Admixture, on whole-genome-wide SNP data derived from three previously described data sets: simulated (2.5 million SNPs, 5 populations), human (1.4 million SNPs, 11 populations) and cattle (32,653 SNPs, 19 populations). We demonstrate that individuals can be effectively allocated to their correct population whilst simultaneously revealing fine-scale structure within the populations. Analyzing the human HapMap populations, we identified unexpected genetic relatedness among individuals, and population stratification within the Indian, African and Mexican samples. In the cattle data set, we correctly assigned all individuals to their respective breeds and detected fine-scale population sub-structures reflecting different sample origins and phenotypes. The NetView pipeline is computationally extremely efficient and can be easily applied on large-scale genome-wide data sets to assign individuals to particular populations and to reproduce fine-scale population structures without prior knowledge of individual ancestry. NetView can be used on any data from which a genetic relationship/distance between individuals can be calculated.
The Pharmacodynamics of the p53-Mdm2 Targeting Drug Nutlin: The Role of Gene-Switching Noise

In this work we investigate, by means of a computational stochastic model, how tumor cells with wild-type p53 gene respond to the drug Nutlin, an agent that interferes with the Mdm2-mediated p53 regulation. In particular, we show how the stochastic gene-switching controlled by p53 can explain experimental dose-response curves, i.e., the observed inter-cell variability of the cell viability under Nutlin action. The proposed model describes in some detail the regulation network of p53, including the negative feedback loop mediated by Mdm2 and the positive loop mediated by PTEN, as well as the reversible inhibition of Mdm2 caused by Nutlin binding. The fate of the individual cell is assumed to be decided by the rising of nuclear-phosphorylated p53 over a certain threshold. We also performed in silico experiments to evaluate the dose-response curve after a single drug dose delivered in mice, or after its fractionated administration. Our results suggest that dose-splitting may be ineffective at low doses and effective at high doses. This complex behavior can be due to the interplay among the existence of a threshold on the p53 level for its cell activity, the nonlinearity of the relationship between the bolus dose and the peak of active p53, and the relatively fast elimination of the drug.
Therapeutic Decision-Making Using Endoscopic Ultrasonography in Endoscopic Treatment of Early Gastric Cancer

Background/Aims We evaluated the effectiveness of an endoscopic ultrasonography (EUS)-based treatment plan compared to an endoscopy-based treatment plan in selecting candidates with early gastric cancer (EGC) for endoscopic submucosal dissection based on the prediction of invasion depth. Methods We reviewed 393 EGCs with differentiated histology from 380 patients who underwent EUS from July 2007 to April 2010. The effectiveness of the EUS-based and endoscopy-based plans was evaluated using a simplified hypothetical treatment algorithm. Results The numbers of endoscopically determined mucosal, indeterminate, and submucosal cancers were 253 (64.4%), 56 (14.2%), and 84 (21.4%), respectively. Overall, the appropriate treatment selection rates were 75.3% (296/393) in the endoscopy-based plan and 71.5% (281/393) in the EUS-based plan (p=0.184). For endoscopic mucosal cancers, the appropriate treatment selection rates in the endoscopy-based plan were 88.1% (223/253), while the use of an EUS-based plan significantly decreased this rate to 81.4% (206/253) (p=0.036). For endoscopic submucosal cancers, the appropriate selection rates did not differ between the endoscopy-based plan (46.4%, 39/84) and the EUS-based plan (53.6%, 45/84) (p=0.070). Conclusions EUS did not increase the likelihood of selecting the appropriate treatment in differentiated-type EGC. Therefore, EUS may not be necessary before treating differentiated-type EGC, especially in endoscopically presumed mucosal cancers.
Preparation and characterization of thermally stable polyimide membranes by electrospinning for protective clothing applications

The aim of the present study was to obtain high-performance materials for heat and flame protective clothing. Therefore, hybrid membranes were prepared using Kevlar as support and aromatic polyimide nanofibers as a protective coating. The exceptional performances of the prepared membranes were highlighted by selected indicators: high thermal stability, fire resistance and improvement in air permeability without modifying drastically the water vapor transmission rate properties. Attenuated total reflectance Fourier transform infrared and 1H nuclear magnetic resonance spectroscopy were employed to confirm polyimide formation. The ability of polyimide to form fibers was investigated by rheological measurements and scanning electron microscopy, respectively. Thermal degradation was studied using thermogravimetric analysis and a microscale combustion calorimeter. The transport properties of the materials were examined by air permeability, water vapor transmission rate and water resistance. It was shown that transport properties of the modified Kevlar membranes could be controlled by varying the spinning time of polyimide solution. Moreover, by annealing the modified Kevlar weavings at 260℃, the structural integrity and transport properties were not affected, whereas a higher resistance to water was found.
QCD Corrections to Scalar Quark Decays

In supersymmetric theories, the main decay modes of scalar quarks are decays into quarks plus charginos or neutralinos, if the gluinos are heavy enough. We calculate the $O({\ensuremath{\alpha}}_{s})$ QCD corrections to these decay modes in the minimal supersymmetric extension of the standard model. In the case of scalar top and bottom quarks, where mixing effects can be important, these corrections can reach values of the order of a few ten percent. They can be either positive or negative and increase logarithmically with the gluino mass. For the scalar partners of light quarks, the corrections do not exceed in general the level of ten percent for gluino masses less than 1 TeV.