Miracle-dz/UniFAR-FTUs huggingface dataset:
Evidence that macrophages are required for T-cell infiltration and rejection of fetal pig pancreas xenografts in nonobese diabetic mice.

BACKGROUND Host macrophages are abundant within fetal pig pancreas xenografts undergoing rejection, but their role is unknown. Therefore, we examined the effect of host macrophage depletion on xenograft rejection. METHODS Nonobese diabetic (NOD) mice were given clodronate-loaded liposomes intravenously to deplete macrophages. Controls received phosphate-buffered saline (PBS) or PBS-liposomes. General immune status was assessed after 2, 3, and 7 days by (1) fluorescence-activated cell sorter analysis of peripheral blood, spleen, and lymph node cells, (2) immunohistochemistry on spleens, and (3) mixed lymphocyte reaction. Organ-cultured fetal pig pancreas was transplanted under the kidney capsule of NOD mice 3 days after clodronate or PBS injection. Grafts were assessed histologically at 4, 5, 6, and 8 days after transplantation. RESULTS Splenic macrophages and peripheral blood monocytes were depleted 2 days after clodronate treatment but had recovered within 11 days. T cell, B cell, and dendritic cell numbers were normal in spleen, peripheral blood, and lymph nodes of clodronate-treated mice, and T cells and antigen-presenting cells from these mice functioned normally in mixed lymphocyte reaction. Clodronate treatment markedly reduced graft infiltration by macrophages, T cells, and eosinophils at 4, 5, and 6 days after transplantation, and was associated with maintenance of endocrine cell viability and insulin expression. However, all grafts were rejected 8 days after transplantation, concordant with reappearance of splenic macrophages. CONCLUSIONS Short-term, specific depletion of macrophages markedly delayed cellular infiltration and rejection of xenografts. The results provide the first evidence that macrophages promote T-cell infiltration and rejection of fetal pig pancreas xenografts in NOD mice.
A robust second order sliding mode controller for Buck converter

A robust second order sliding mode control is used for Buck converter. After building the model of Buck circuit, the Twisting Algorithm is designed, which is based on relative degree of sliding mode control. The second order sliding mode not only reserves advantages of traditional sliding mode: robustness, but also eliminates the chattering problem. By comparing PID control with second order sliding mode control, simulation results indicate that second order sliding mode control have stronger robustness despite load disturbance.
Czech-English Word Alignment

We describe an experiment with Czech-English word alignment. Half a thousand sentences were manually annotated by two annotators in parallel and the most frequent reasons for disagreement are described. We evaluate the accuracy of GIZA++ alignment toolkit on the data and identify that lemmatization of the Czech part can reduce alignment error to a half. Furthermore we document that about 38% of tokens difficult for GIZA++ were difficult for humans already.
Endogenous chloride channels of insect sf9 cells. Evidence for coordinated activity of small elementary channel units

The endogenous Cl- conductance of Spodoptera frugiperda (Sf9) cells was studied 20-35 h after plating out of either uninfected cells or cells infected by a baculovirus vector carrying the cloned beta-galactosidase gene (beta-Gal cells). With the cation Tris+ in the pipette and Na+ in the bath, the reversal potential of whole-cell currents was governed by the prevailing Cl- equilibrium potential and could be fitted by the Goldman-Hodgkin-Katz equation with similar permeabilities for uninfected and beta-Gal cells. In the frequency range 0.12 < f < 300 Hz, the power density spectrum of whole-cell Cl- currents could be fitted by three Lorentzians. Independent of membrane potential, >50% of the total variance of whole-cell current fluctuations was accounted for by the low frequency Lorentzian (fc = 0.40 +/- 0.03 Hz, n = 6). Single-Cl- channels showed complex gating kinetics with long lasting (seconds) openings interrupted by similar long closures. In the open state, channels exhibited fast burst-like closures. Since the patches normally contained more than a single channel, it was not possible to measure open and closed dwell-time distributions for comparing single-Cl- channel activity with the kinetic features of whole-cell currents. However, the power density spectrum of Cl- currents of cell-attached and excised outside-out patches contained both high and low frequency Lorentzian components, with the corner frequency of the slow component (fc = 0.40 +/- 0.02 Hz, n = 4) similar to that of whole-cell current fluctuations. Chloride channels exhibited multiple conductance states with similar Goldman-Hodgkin-Katz-type rectification. Single-channel permeabilities covered the range from approximately 0.6.10(-14) cm5/s to approximately 6.10(-14) cm3/s, corresponding to a limiting conductance (gamma 150/150) of approximately 3.5 pS and approximately 35 pS, respectively. All states reversed near the same membrane potential, and they exhibited similar halide ion selectivity, P1 > PCl approximately PBr. Accordingly, Cl- current amplitudes larger than current flow through the smallest channel unit resolved seem to result from simultaneous open/shut events of two or more channel units.
Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated

HO endonuclease-induced double-strand breaks in Saccharomyces cerevisiae can undergo recombination by two distinct and competing pathways. In a plasmid containing a direct repeat, in which one repeat is interrupted by an HO endonuclease cut site, gap repair yields gene conversions while single-strand annealing produces deletions. Consistent with predictions of the single-strand annealing mechanism, deletion formation is not accompanied by the formation of a reciprocal recombination product. Deletions are delayed 60 min when the distance separating the repeats is increased by 4.4 kb. Moreover, the rate of deletion formation corresponds to the time at which complementary regions become single stranded. Gap repair processes are independent of distance but are reduced in rad52 mutants and in G1-arrested cells.
Evasion Techniques: Sneaking through Your Intrusion Detection/Prevention Systems

Detecting attacks disguised by evasion techniques is a challenge for signature-based Intrusion Detection Systems (IDSs) and Intrusion Prevention Systems (IPSs). This study examines five common evasion techniques to determine their ability to evade recent systems. The denial-of-service (DoS) attack attempts to disable a system by exhausting its resources. Packet splitting tries to chop data into small packets, so that a system may not completely reassemble the packets for signature matching. Duplicate insertion can mislead a system if the system and the target host discard different TCP/IP packets with a duplicate offset or sequence. Payload mutation fools a system with a mutative payload. Shellcode mutation transforms an attacker's shellcode to escape signature detection. This study assesses the effectiveness of these techniques on three recent signature-based systems, and among them, explains why Snort can be evaded. The results indicate that duplicate insertion becomes less effective on recent systems, but packet splitting, payload mutation and shellcode mutation can be still effective against them.
Energy-Efficient Medium Access Control Protocols for Wireless Sensor Networks

A key challenge for wireless sensor networks is how to extend network lifetime with dynamic power management on energy-constraint sensor nodes. In this paper, we propose two energy-efficient MAC protocols: asynchronous MAC (A-MAC) protocol and asynchronous schedule-based MAC (ASMAC) protocol. A-MAC and ASMAC protocols are attractive due to their suitabilities for multihop networks and capabilities of removing accumulative clock-drifts without any network synchronization. Moreover, we build a traffic-strength- and network-density-based model to adjust essential algorithm parameters adaptively. Simulation results show that our algorithms can successfully acquire the optimum values of power-on/off duration, schedule-broadcast interval, as well as super-time-slot size and order. These algorithm parameters can ensure adequate successful transmission rate, short waiting time, and high energy utilization. Therefore, not only the performance of network is improved but also its lifetime is extended when A-MAC or ASMAC is used.
Dramatic Co-Activation of WWOX/WOX1 with CREB and NF-κB in Delayed Loss of Small Dorsal Root Ganglion Neurons upon Sciatic Nerve Transection in Rats

Background Tumor suppressor WOX1 (also named WWOX or FOR) is known to participate in neuronal apoptosis in vivo. Here, we investigated the functional role of WOX1 and transcription factors in the delayed loss of axotomized neurons in dorsal root ganglia (DRG) in rats. Methodology/Principal Findings Sciatic nerve transection in rats rapidly induced JNK1 activation and upregulation of mRNA and protein expression of WOX1 in the injured DRG neurons in 30 min. Accumulation of p-WOX1, p-JNK1, p-CREB, p-c-Jun, NF-κB and ATF3 in the nuclei of injured neurons took place within hours or the first week of injury. At the second month, dramatic nuclear accumulation of WOX1 with CREB (>65% neurons) and NF-κB (40–65%) occurred essentially in small DRG neurons, followed by apoptosis at later months. WOX1 physically interacted with CREB most strongly in the nuclei as determined by FRET analysis. Immunoelectron microscopy revealed the complex formation of p-WOX1 with p-CREB and p-c-Jun in vivo. WOX1 blocked the prosurvival CREB-, CRE-, and AP-1-mediated promoter activation in vitro. In contrast, WOX1 enhanced promoter activation governed by c-Jun, Elk-1 and NF-κB. WOX1 directly activated NF-κB-regulated promoter via its WW domains. Smad4 and p53 were not involved in the delayed loss of small DRG neurons. Conclusions/Significance Rapid activation of JNK1 and WOX1 during the acute phase of injury is critical in determining neuronal survival or death, as both proteins functionally antagonize. In the chronic phase, concurrent activation of WOX1, CREB, and NF-κB occurs in small neurons just prior to apoptosis. Likely in vivo interactions are: 1) WOX1 inhibits the neuroprotective CREB, which leads to eventual neuronal death, and 2) WOX1 enhances NF-κB promoter activation (which turns to be proapoptotic). Evidently, WOX1 is the potential target for drug intervention in mitigating symptoms associated with neuronal injury.
A note on flow reversal in a wavy channel filled with anisotropic porous material

Viscous flow through a symmetric wavy channel filled with anisotropic porous material is investigated analytically. Flow inside the porous bed is assumed to be governed by the anisotropic Brinkman equation. It is assumed that the ratio of the channel width to the wavelength is small (i.e. δ2≪1). The problem is solved up to O(δ2) assuming that δ2λ2≪1, where λ is the anisotropic ratio. The key purpose of this paper is to study the effect of anisotropic permeability on flow near the crests of the wavy channel which causes flow reversal. We present a detailed analysis of the flow reversal at the crests. The ratio of the permeabilities (anisotropic ratio) is responsible for the flow separation near the crests of the wall where viscous forces are effective. For a flow configuration (say, low amplitude parameter) in which there is no separation if the porous media is isotropic, introducing anisotropy causes flow separation. On the other hand, interestingly, flow separation occurs even in the case of isotropic porous medium if the amplitude parameter a is large.
Material removal characteristics of full aperture optical polishing process

ABSTRACT Precision surfaces of optical grade have been in great demand for various applications such as high-power laser systems, astronomical reflecting telescopes glass mirrors, folding mirrors of avionics displays, reflectors, guides for transmission of hot and cold neutron beams for neutron exploration setups, electronic substrate, display covers and substrates for biomedical imaging and sensing, etc. Generation of such surfaces has been a challenge; particularly the polishing operation of optical fabrication process is quite critical which determines the final surface quality. To achieve the required optical surface parameters, a good control and systematic understanding of polishing process and its parameters are required. However, the conventional or full aperture optical polishing process still depends on operator's skills to achieve the target surface quality. To exploit the process to the extent, it is must to have a scientific understanding of material removal behavior of the polishing process, which will lead to the process becoming deterministic. This article has attempted to address this issue. Authors have summarized different material removal theories and discussed various mathematical models as proposed by researchers so far. Attempt has been made to come up with knowledge gaps which are required to be bridged in future.
Leakage-power-aware clock period minimization

In the design of nonzero clock skew circuits, an increase of the path delay may improve circuit speed and reduce leakage power. However, the impact of increasing path delay on the trade-off between circuit speed and leakage power has not been well studied. In this paper, we propose a two-step approach for leakage-power-aware clock period minimization. Compared with previous works, our approach has the following two significant contributions. First, our approach is the first leakage-power-aware clock skew scheduling that can guarantee working with the lower bound of the clock period. Second, our approach is also the first work that demonstrates the problem of minimizing the number of extra buffers is a polynomial-time problem. Benchmark data show that our approach achieves the best results in terms of the clock period and the leakage power.
Comparative Efficacy of Different Herbal Plant's Leaf Extract on Haematology, Intestinal Histomorphology and Nutrient Digestibility in Broilers

The study was planned to determine the comparative efficacy of leaf extract of Azadirachta indica, Cichorium intybus and Moringa oleifera, on haematology, intestinal histomorphology and nutrient digestibility in broilers. Day old broiler chicks (n=180) purchased from a commercial hatchery were reared in a group for one week (adaptation period). At day 8, these birds were individually weighed and 120 birds of middle weight range were randomly selected and distributed into 12 replicates (10 chicks/replicate). These replicates were further allotted to four treatment groups designated as A, B, C and D. Group A was offered water without any supplementation and served as a control. Whereas, group B, C and D were offered water supplemented with leaf extract of Azadirachta indica (4%), Cichorium intybus (2%) and Moringa oleifera (6%), @ 50 ml/l, @ 10 ml/l and @ 30 ml/l, respectively. Results of the study revealed that supplementation of Azadirachta indica leaf extract showed better nutrient digestibility of crude protein and ether extract as compared to that of control. However, digestibility of crude fiber due to the treatments remained unaffected. Stabilization of blood metabolites resulted in improved intestinal histo-morphology. The birds using Azadirachta indica fetched the highest profit as compare to the other treatment groups. Therefore, use of Azadirachta indica leaf extracts in broiler is recommended as inexpensive and efficient growth promoting agent without residual effects like antibiotic growth promoter.
Capacity of correlated MIMO Rayleigh channels

Abstract-This paper presents some exact results on the capacity of multiple-input-multiple-output (MIMO) channels subject to correlated Rayleigh fading when perfect channel state information (CSI) is known at the receiver. The authors focus on the semicorrelated scenario in which correlation exists either at the transmitter or at the receiver. , They consider two cases: 1) the transmitter does not have any CSI and as such allocates power equally among transmitter antennas and 2) the transmitter only knows the statistical distribution of the channel. The first case derives the moment generating function (MGF) of the mutual information (MI) and then deduces from this MGF the mean MI. The authors also study the cumulative distribution function (CDF) of the MI, which can serve as an upper bound to the outage probability under the capacity versus outage formulation when the channel is nonergodic. The second case studies the capacity achieved by optimum power-loading and beamforming schemes based on covariance feedback. Numerical results illustrate that the full capacity of MIMO systems can be preserved even for relatively high values of correlation coefficients.
Performance of Swabs, Lavage, and Diluents to Quantify Biomarkers of Female Genital Tract Soluble Mucosal Mediators

Background Measurement of immune mediators and antimicrobial activity in female genital tract secretions may provide biomarkers predictive of risk for HIV-1 acquisition and surrogate markers of microbicide safety. However, optimal methods for sample collection do not exist. This study compared collection methods. Methods Secretions were collected from 48 women (24 with bacterial vaginosis [BV]) using vaginal and endocervical Dacron and flocked swabs. Cervicovaginal lavage (CVL) was collected with 10 mL of Normosol-R (n = 20), saline (n = 14), or water (n = 14). The concentration of gluconate in Normosol-R CVL was determined to estimate the dilution factor. Cytokine and antimicrobial mediators were measured by Luminex or ELISA and corrected for protein content. Endogenous anti-HIV-1 and anti-E. coli activity were measured by TZM-bl assay or E. coli growth. Results Higher concentrations of protein were recovered by CVL, despite a 10-fold dilution of secretions, as compared to swab eluents. After protein correction, endocervical swabs recovered the highest mediator levels regardless of BV status. Endocervical and vaginal flocked swabs recovered significantly higher levels of anti-HIV-1 and anti-E. coli activity than Dacron swabs (P<0.001). BV had a significant effect on CVL mediator recovery. Normosol-R tended to recover higher levels of most mediators among women with BV, whereas saline or water tended to recover higher levels among women without BV. Saline recovered the highest levels of anti-HIV-1 activity regardless of BV status. Conclusions Endocervical swabs and CVL collected with saline provide the best recovery of most mediators and would be the optimal sampling method(s) for clinical trials.
Technical note: a technique for inserting a T-cannula into the distal ileum of pregnant sows.

Our objective was to develop a technique for cannulating the terminal ileum in pregnant sows and to evaluate the usefulness of this procedure in digestibility studies in pregnant and lactating sows. A simple T-cannula was inserted into the terminal ileum approximately 15 cm cranial to the ileo-cecal valve in a total of 15 multiparous sows at d 40 (+/- 5 d) of pregnancy. All cannulated sows recovered quickly after the surgery and within 3 d they were eating normally. Elevated body temperatures were not registered in any sows, and clinical problems related to the surgery were not observed. At farrowing, normal litters were born, and number of stillborn pigs, number of live born pigs, and daily litter weight gain were not affected by the cannulations (P > .05). Of the 15 sows originally cannulated, 11 sows were used for collection of digesta during gestation and the following lactating period. Eight sows were rebred after weaning, and five sows were rebred after the second lactation period and kept for another cycle. Blockage of the cannulas never occurred, and no serious problems were associated with digesta collections. The experiment demonstrated that pregnant sows can be prepared with a simple T-cannula in the distal ileum and that the cannula can be maintained in sows throughout the reproductive cycle. Hence, the procedure provides a tool for obtaining digesta from pregnant and lactating sows for nutrition studies.
The nonrandom participation of human acrocentric chromosomes in Robertsonian translocations

The present study explores the origin of human Robertsonian translocations (RT) and the causes of the nonrandom participation of the different acrocentrics in them. Satellite associations have been analysed in 966 cells from 8 persons, and 1266 RT with ascertainment have been collected from the literature. The observation that the chromosomes preferentially taking part in satellite associations vary between individuals is confirmed. However, since a preferred chromosome appears to associate at random with the others, this phenomenon should not add to the nonrandomness of the RT.
Seasonal dependence of northern high‐latitude upper thermospheric winds: A quiet time climatological study based on ground‐based and space‐based measurements

This paper investigates the large‐scale seasonal dependence of geomagnetically quiet time, northern high‐latitude F region thermospheric winds by combining extensive observations from eight ground‐based (optical remote sensing) and three space‐based (optical remote sensing and in situ) instruments. To provide a comprehensive picture of the wind morphology, data are assimilated into a seasonal empirical vector wind model as a function of season, latitude, and local time in magnetic coordinates. The model accurately represents the behavior of the constituent data sets. There is good general agreement among the various data sets, but there are some major offsets between GOCE and the other data sets, especially on the duskside. The assimilated wind patterns exhibit a strong and large duskside anticyclonic circulation cell, sharp latitudinal gradients in the duskside auroral zone, strong antisunward winds in the polar cap, and a weaker tendency toward a dawnside cyclonic circulation cell. The high‐latitude wind system shows a progressive intensification of wind patterns from winter to equinox to summer. The latitudinal extent of the duskside circulation cell does not depend strongly on season. Zonal winds show a mainly diurnal variation (two extrema) around polar and middle latitudes and semidiurnal variation (four extrema) at auroral latitudes; meridional winds are primarily diurnal at all high latitudes. The strength of zonal winds channeling through the auroral zone on the duskside is strongest in the summer season. The vorticity of the wind pattern increases from winter to summer, whereas divergence is maximum in equinox. In all three seasons, divergence is weaker than vorticity.
The Cytotoxic Role of Intermittent High Glucose on Apoptosis and Cell Viability in Pancreatic Beta Cells

Objectives. Glucose fluctuations are both strong predictor of diabetic complications and crucial factor for beta cell damages. Here we investigated the effect of intermittent high glucose (IHG) on both cell apoptosis and proliferation activity in INS-1 cells and the potential mechanisms. Methods. Cells were treated with normal glucose (5.5 mmol/L), constant high glucose (CHG) (25 mmol/L), and IHG (rotation per 24 h in 11.1 or 25 mmol/L) for 7 days. Reactive oxygen species (ROS), xanthine oxidase (XOD) level, apoptosis, cell viability, cell cycle, and expression of cyclinD1, p21, p27, and Skp2 were determined. Results. We found that IHG induced more significant apoptosis than CHG and normal glucose; intracellular ROS and XOD levels were more markedly increased in cells exposed to IHG. Cells treated with IHG showed significant decreased cell viability and increased cell proportion in G0/G1 phase. Cell cycle related proteins such as cyclinD1 and Skp2 were decreased significantly, but expressions of p27 and p21 were increased markedly. Conclusions. This study suggested that IHG plays a more toxic effect including both apoptosis-inducing and antiproliferative effects on INS-1 cells. Excessive activation of cellular stress and regulation of cyclins might be potential mechanism of impairment in INS-1 cells induced by IHG.