Miracle-dz/UniFAR-FTUs huggingface dataset:
Effect of increasing proportion of supplemental nitrogen from urea on intake and utilization of low-quality, tallgrass-prairie forage by beef steers.

Five Angus x Hereford steers with ruminal and duodenal fistulas were used in a 5 x 5 Latin square to determine effects of increasing the proportion of urea in supplemental degradable intake protein (DIP) on intake, fermentation, and digestion. Steers had ad libitum access to low-quality, tallgrass-prairie forage (2.4% CP, 76% NDF). Supplemental DIP (380 g/d) was from sodium caseinate and(or) urea and was balanced with cornstarch to provide a final supplement (approximately 939 g DM/d) that contained 40% CP. The percentages of supplemental DIP from urea were 0, 25, 50, 75, and 100%. Intake of forage OM was not affected (P > or = .30) by urea level. Ruminal and total tract digestibilities of OM and NDF generally responded in a quadratic manner (P < or = .09) to increasing urea, with the lowest values observed at the highest urea level. As a result, digestible OM intake (DOMI) declined (linear, P = .03) with increasing proportions of urea and tended (quadratic, P = .14) to exhibit the largest proportional decline at the highest urea level. The effects of increasing urea on duodenal N flow, microbial efficiency, ruminal contents, and fluid dilution rate were minimal. Ruminal ammonia N and molar percent acetate increased linearly (P < or = .02), whereas most other VFA (except propionate) decreased (P < or = .05) with increasing urea. In conclusion, although forage OM intake was not altered, OM digestion, NDF digestion, and DOMI were lowest when all supplemental DIP was supplied as urea. Changes in fermentation characteristics reflected the change in source of available nitrogen.
Deblocking of block-transform compressed images using weighted sums of symmetrically aligned pixels

A new class of related algorithms for deblocking block-transform compressed images and video sequences is proposed in this paper. The algorithms apply weighted sums on pixel quartets, which are symmetrically aligned with respect to block boundaries. The basic weights, which are aimed at very low bit-rate images, are obtained from a two-dimensional function which obeys predefined constraints. Using these weights on images compressed at higher bit rates produces a deblocked image which contains blurred "false" edges near real edges. We refer to this phenomenon as the ghosting effect. In order to prevent its occurrences, the weights of pixels, which belong to nonmonotone areas, are modified by dividing each pixel's weight by a predefined factor called a grade. This scheme is referred to as weight adaptation by grading (WABG). Better deblocking of monotone areas is achieved by applying three iterations of the WABG scheme on such areas followed by a fourth iteration which is applied on the rest of the image. We refer to this scheme as deblocking frames of variable size (DFOVS). DFOVS automatically adapts itself to the activity of each block. This new class of algorithms produces very good subjective results and PSNR results which are competitive relative to available state-of-the-art methods.
Diversity of T Cell Epitopes in Plasmodium falciparum Circumsporozoite Protein Likely Due to Protein-Protein Interactions

Circumsporozoite protein (CS) is a leading vaccine antigen for falciparum malaria, but is highly polymorphic in natural parasite populations. The factors driving this diversity are unclear, but non-random assortment of the T cell epitopes TH2 and TH3 has been observed in a Kenyan parasite population. The recent publication of the crystal structure of the variable C terminal region of the protein allows the assessment of the impact of diversity on protein structure and T cell epitope assortment. Using data from the Gambia (55 isolates) and Malawi (235 isolates), we evaluated the patterns of diversity within and between epitopes in these two distantly-separated populations. Only non-synonymous mutations were observed with the vast majority in both populations at similar frequencies suggesting strong selection on this region. A non-random pattern of T cell epitope assortment was seen in Malawi and in the Gambia, but structural analysis indicates no intramolecular spatial interactions. Using the information from these parasite populations, structural analysis reveals that polymorphic amino acids within TH2 and TH3 colocalize to one side of the protein, surround, but do not involve, the hydrophobic pocket in CS, and predominately involve charge switches. In addition, free energy analysis suggests residues forming and behind the novel pocket within CS are tightly constrained and well conserved in all alleles. In addition, free energy analysis shows polymorphic residues tend to be populated by energetically unfavorable amino acids. In combination, these findings suggest the diversity of T cell epitopes in CS may be primarily an evolutionary response to intermolecular interactions at the surface of the protein potentially counteracting antibody-mediated immune recognition or evolving host receptor diversity.
The relationship between knee osteoarthritis and osteoporosis.

OBJECTIVE The aim of this study was to investigate the association between knee osteoarthritis (OA) and bone mineral density (BMD) in the femur and lumbar vertebrae. MATERIALS AND METHODS A total of 74 female patients (mean age 61.9 ±9.1 years, mean body mass index 27.09±4.24) diagnosed with knee OA were included in this study. To assess knee OA, bilateral weight-bearing antero-posterior knee radiographs were taken and graded from 0 to 4 according to Kellgren-Lawrence criteria. The BMD of the subjects was measured using dual-energy X-ray absorptiometry (DEXA). BMD measurements of those with OA were compared with those without OA. RESULTS While there was no correlation between BMD and the grade of knee OA, a significant negative correlation was found between age and femur BMD. Body mass index was positively correlated with OA and negatively correlated with OP. CONCLUSION Further investigations are needed to demonstrate the association between knee OA and BMD.
Stimulus Bias Provides Evidence for Conformational Constraints in the Structure of a G Protein-coupled Receptor*

Background: GPCRs adopt multiple active states, resulting in pathway-biased signaling. Results: A novel method for quantifying stimulus bias was applied to mutational analysis of the M2 muscarinic GPCR. Conclusion: We established that aromatic residues in an allosteric site regulate the activation state of the receptor. Significance: The combination of mutagenesis with statistical quantification of stimulus bias results in enriched structure-function relationships at GPCRs. A key characteristic of G protein-coupled receptors (GPCRs) is that they activate a plethora of signaling pathways. It is now clear that a GPCR coupling to these pathways can be regulated selectively by ligands that differentially drive signaling down one pathway in preference to another. This concept, termed stimulus bias, is revolutionizing receptor biology and drug discovery by providing a means of selectively targeting receptor signaling pathways that have therapeutic impact. Herein, we utilized a novel quantitative method that determines stimulus bias of synthetic GPCR ligands in a manner that nullifies the impact of both the cellular background and the “natural bias” of the endogenous ligand. By applying this method to the M2 muscarinic acetylcholine receptor, a prototypical GPCR, we found that mutation of key residues (Tyr-802.61 and Trp-993.28) in an allosteric binding pocket introduces stimulus bias in response to the atypical ligands AC-42 (4-n-butyl-1-(4-(2-methylphenyl)-4-oxo-1-butyl)piperidine HCl) and 77-LH-28-1 (1-(3-(4-butyl-1-piperidinyl)propyl)- 3,3-dihydro-2(1H)-quinolinone). By comparing stimulus bias factors among receptor internalization, G protein activation, extracellular-regulated protein kinase 1/2 (ERK1/2) signaling, and receptor phosphorylation, we provide evidence that Tyr-802.61 and Trp-993.28 act either as molecular switches or as gatekeeper residues that introduce constraints limiting the active conformation of the M2 muscarinic acetylcholine receptor and thereby regulate stimulus bias. Furthermore, we provide evidence that downstream signaling pathways previously considered to be related to each other (i.e. receptor phosphorylation, internalization, and activation of ERK1/2) can act independently.
Myocardial Infarction in Parents Who Lost a Child: A Nationwide Prospective Cohort Study in Denmark

Background—The association between psychological stress and coronary heart disease remains unclear. We conducted a prospective follow-up study based on national registers to investigate if the death of a child, one of the most severe stressors, increases the risk of myocardial infarction (MI) in parents. Methods and Results—From 1980 to 1996, 19 361 parents who lost a child (<18 years of age) in Denmark were recruited to the exposed cohort, and 295 540 parents matched on family structure were selected for the unexposed cohort. The Cox proportional hazards model was used to evaluate the relative risk (RR) of myocardial infarction (MI). The average RRs for a fatal MI and any first MI among the exposed were 1.36 (95% CI, 0.98 to 1.88) and 1.28 (95% CI, 1.08 to 1.51), respectively. The two cohorts had similar MI risk during the first 6 years of follow-up. From the 7th to the 17th year of follow-up, the exposed cohort had a RR of 1.58 (95% CI, 1.08 to 2.30) for fatal MI and a RR of 1.31 (95% CI, 1.09 to 1.57) for first MI. Parents who lost a child unexpectedly, especially from sudden infant death syndrome, experienced higher RRs. Conclusions—The death of a child was associated with an increased risk of MI in bereaved parents.
Age- and Gender Dependent Liver Fat Content in a Healthy Normal BMI Population as Quantified by Fat-Water Separating DIXON MR Imaging

Objectives To establish age- and sex-dependent values of magnetic resonance (MR) liver fat-signal fraction (FSF) in healthy volunteers with normal body-mass index (BMI). Methods 2-point mDIXON sequences (repetition time/echo time, 4.2msec/1.2msec, 3.1msec) at 3.0 Tesla MR were acquired in 80 healthy volunteers with normal BMI (18.2 to 25.7 kg/m2) between 20 and 62 years (10 men/10 women per decade). FSF was measured in 5 liver segments (segment II, III, VI, VII, VIII) based on mean signal intensities in regions of interest placed on mDIXON-based water and fat images. Multivariate general linear models were used to test for significant differences between BMI-corrected FSF among age subgroups. Pearson and Spearman correlations between FSF and several body measures were calculated. Results Mean FSF (%) ± standard deviations significantly differed between women (3.91 ± 1.10) and men (4.69 ± 1.38) and varied with age for women/men (p-value: 0.002/0.027): 3.05 ± 0.49/3.74 ± 0.60 (age group 20–29), 3.75 ± 0.66/4.99 ± 1.30 (30–39), 4.76 ± 1.16/5.25 ± 1.97 (40–49) and 4.09 ± 1.26/4.79 ± 0.93 (50–62). FSF differences among age subgroups were significant for women only (p = 0.003). Conclusions MR-based liver fat content is higher in men and peaks in the fifth decade for both genders.
Multi-robot team formation control in the GUARDIANS project

Purpose – The Group of Unmanned Assistant Robots Deployed in Aggregative Navigation by Scent (GUARDIANS) multi‐robot team is to be deployed in a large warehouse in smoke. The team is to assist firefighters search the warehouse in the event or danger of a fire. The large dimensions of the environment together with development of smoke which drastically reduces visibility, represent major challenges for search and rescue operations. The GUARDIANS robots act alongside a firefighter and guide and accompany the firefighters on the site while indicating possible obstacles and the locations of danger and maintain communications links. The purpose of this paper is to focus on basic navigation behaviours of multi‐robot or human‐robot teams, which have to be achieved without central and on‐line control in both categories of GUARDIANS robots' tasks.Design/methodology/approach – In order to fulfill the aforementioned tasks, the robots need to be able to perform certain behaviours. Among the basic behaviours are capab.
Leptin is a risk marker for first-ever hemorrhagic stroke in a population-based cohort.

BACKGROUND AND PURPOSE Leptin, important for body weight regulation, may be involved in the pathogenesis of the insulin resistance syndrome, associated with cardiovascular disease. We tested to determine whether leptin is a risk marker for first-ever stroke in a nested case-referent study. METHODS We identified 113 patients with first-ever stroke (94 with ischemic and 19 with hemorrhagic stroke) who, before the stroke, had participated in population-based health surveys in northern Sweden. Referents were matched for sex, age, date and type of health survey, and geographic region. Blood pressure (BP), body mass index (BMI), and presence of smoking, diabetes, and hypertension were recorded. Total cholesterol, insulin, and leptin were analyzed in stored samples. Risk markers for first-ever stroke were analyzed by conditional logistic regression analysis. RESULTS Patients with hemorrhagic stroke had higher levels of BMI and systolic and diastolic BPs. Leptin levels were 72% and 59% higher in males and females, respectively, with hemorrhagic stroke versus referents. Patients with ischemic stroke more often had hypertension, diabetes mellitus, and higher fasting glucose and insulin levels. A diagnosis of hypertension and elevated systolic and diastolic BPs were significant risk markers for first-ever hemorrhagic stroke in univariate analysis. High leptin (OR=20.55; 95% CI, 1.12 to 376.7) levels together with hypertension (OR=16.28; 95% CI, 1.49 to 177.3) remained as significant risk markers in a multivariate model. The combination of high leptin and high systolic or diastolic BP were associated with a profoundly increased risk for hemorrhagic stroke (OR=22.11; 95% CI, 1.57 to 310.9). Diabetes, hypertension, and obesity (BMI >/=27), together with high levels of insulin, glucose, systolic and diastolic BP, were significant risk markers for first-ever ischemic stroke in univariate analysis. Hypertension (OR=2.10; 95% CI, 1.14 to 3.86) remained as an independent risk marker in a multivariate model. CONCLUSIONS Plasma leptin is strongly associated with an increased risk for first-ever hemorrhagic stroke, independent of other risk markers for cardiovascular disease. Leptin may be an important link in the development of cardiovascular disease in obesity.
The Obesity Paradox and Heart Failure: A Systematic Review of a Decade of Evidence

There is scientific consensus that obesity increases the risk of cardiovascular diseases, including heart failure. However, among persons who already have heart failure, outcomes seem to be better in obese persons as compared with lean persons: this has been termed the obesity paradox, the mechanisms of which remain unclear. This study systematically reviewed the evidence of the relationship between heart failure mortality (and survival) and weight status. Search of the PubMed/MEDLINE and EMBASE databases was done according to the PRISMA protocol. The initial search identified 9879 potentially relevant papers, out of which ten studies met the inclusion criteria. One study was a randomized clinical trial and 9 were observational cohort studies: 6 prospective and 3 retrospective studies. All studies used the BMI, WC, or TSF as measure of body fatness and NYHA Classification of Heart Failure and had single outcomes, death, as study endpoint. All studies included in review were longitudinal studies. All ten studies reported improved outcomes for obese heart failure patients as compared with their normal weight counterparts; worse prognosis was demonstrated for extreme obesity (BMI > 40 kg/m2). The findings of this review will be of significance in informing the practice of asking obese persons with heart failure to lose weight. However, any such recommendation on weight loss must be consequent upon more conclusive evidence on the mechanisms of the obesity paradox in heart failure and exclusion of collider bias.
Noxious Cutaneous Thermal Stimuli Induce a Graded Release of Endogenous Substance P in the Spinal Cord: Imaging Peptide ActionIn Vivo

Dorsal root ganglia (DRG) neurons synthesize and transport substance P (SP) to the spinal cord where it is released in response to intense noxious somatosensory stimuli. We have shown previously that SP release in vivo causes a rapid and reversible internalization of SP receptors (SPRs) in dorsal horn neurons, which may provide a pharmacologically specific image of neurons activated by SP. Here, we report that noxious heat (43°, 48°, and 55°C) and cold (10°, 0°, −10°, and −20°C) stimuli, but not innocuous warm (38°C) and cold (20°C) stimuli, applied to the hindpaw of anesthetized rats induce SPR internalization in spinal cord neurons that is graded with respect to the intensity of the thermal stimulus. Thus, with increasing stimulus intensities, both the total number of SPR+ lamina I neurons showing SPR internalization and the number of internalized SPR+ endosomes within each SPR immunoreactive neuron showed a significant increase. These data suggest that thermal stimuli induce a graded release of SP from primary afferent terminals and that agonist dependent receptor endocytosis provides evidence of a spatially and pharmacologically unique “neurochemical signature” after specific somatosensory stimuli.
Self-management of hybrid optical and packet switching networks

Hybrid optical and packet switching networks enable data to be forwarded at multiple levels. Large IP flows at the IP level may be therefore moved to the optical level bypassing the per hop routing decisions of the IP level. Such move could be beneficial since congested IP networks could be offloaded; leaving more resources for other smaller IP flows. At the same time, the flows switched at the optical level would experience better quality of service (QoS) thanks to larger bandwidth and negligible jitter. Moving these large flows to the optical level requires the creation of lightpaths. Current approaches to manage lightpaths rely on decisions of which IP flows will be moved to lightpaths taken by network managers. As a result, only IP flows explicitly selected by such managers will take advantage of being transferred over lightpaths. However, it may be that there are also other large IP flows, not known to the manager, which could potentially profit from being moved to the optical level. The objective of this Ph.D. thesis is to investigate the feasibility of employing self-management capabilities on hybrid optical and packet switching networks in order to autonomically move large IP flows from the IP level to the optical level, as well as, creating and releasing lightpaths to transport such flows at the optical level.
Determining the courtyard thermal efficiency and its impact on urban fabric: A contextual study of Baghdad, Iraq

: Many researchers advocate readopting the courtyard pattern in hot climate regions for being more thermally efficient than the modern western ones, such as the detached housing. The courtyard helps through reducing heat gain and having sufficient natural ventilation to have a comfortable indoor environment. But, it is suggested that this building pattern loses its efficiency by being out of its compact urban fabric context due to having high exposure to the solar radiation. Aiming at finding a thermally efficient solution for the hot climate regions, this research investigates the thermal efficiency of courtyard pattern and examines its relevance in the present urban context. To achieve this aim, the thermal performance of a courtyard and a detached non-courtyard house was simulated. The courtyard house was tested in two locations: a traditional compact urban fabric and a modern less compact one. DesignbBuilder simulation tool was used for this purpose. The simulation results are derived from fieldwork carried out in Bagdad, where both traditional and contemporary neighbourhoods can be found. They clearly demonstrate the efficiency of courtyard pattern in the compact urban environment. These results support adopting the courtyard pattern in contemporary and future buildings, with due consideration for the urban environment.
Design Method for High-Order Sigma&#8211;Delta Modulator Stabilized by Departure Angles Designed to Keep Root Loci in Unit Circle

In this brief, a systematic method to design stable single-stage high-order sigma-delta modulators (SDMs) without the need of stability-recovery mechanisms is proposed. It is shown that if the critical root loci of an SDM transfer function are all located inside a unit circle, then the SDM is guaranteed to be stable. Instead of basing the design on noise transfer function as in previous designs, the presented method bases the design on proper choice of open-loop transfer function departure angles so as to keep the critical root loci within the unit circle. A stable fourth-order SDM with the critical root loci inside the unit circle is given as a design example. Simulation results reveal that based on the presented design method, stable single-stage high-order SDMs can be free from overload instability even with full-scale input magnitude. Tradeoffs between stability and performance of the SDMs are presented. By allowing parts of the critical root loci to be located outside the unit circle, this method can be extended for SDM designs with higher signal-to-noise ratio but smaller stable input range
Renal outcomes of agalsidase beta treatment for Fabry disease: role of proteinuria and timing of treatment initiation

Background. The purpose of this study was to identify determinants of renal disease progression in adults with Fabry disease during treatment with agalsidase beta. Methods. Renal function was evaluated in 151 men and 62 women from the Fabry Registry who received agalsidase beta at an average dose of 1 mg/kg/2 weeks for at least 2 years. Patients were categorized into quartiles based on slopes of estimated glomerular filtration rate (eGFR) during treatment. Multivariate logistic regression analyses were used to identify factors associated with renal disease progression. Results. Men within the first quartile had a mean eGFR slope of –0.1 mL/min/1.73m2/year, whereas men with the most rapid renal disease progression (Quartile 4) had a mean eGFR slope of –6.7 mL/min/1.73m2/year. The risk factor most strongly associated with renal disease progression was averaged urinary protein:creatinine ratio (UP/Cr) ≥1 g/g (odds ratio 112, 95% confidence interval (95% CI) 4–3109, P = 0.0054). Longer time from symptom onset to treatment was also associated with renal disease progression (odds ratio 19, 95% CI 2–184, P = 0.0098). Women in Quartile 4 had the highest averaged UP/Cr (mean 1.8 g/g) and the most rapid renal disease progression: (mean slope –4.4 mL/min/1.73m2/year). Conclusions. Adults with Fabry disease are at risk for progressive loss of eGFR despite enzyme replacement therapy, particularly if proteinuria is ≥1 g/g. Men with little urinary protein excretion and those who began receiving agalsidase beta sooner after the onset of symptoms had stable renal function. These findings suggest that early intervention may lead to optimal renal outcomes.