Miracle-dz/UniFAR-FTUs huggingface dataset:
Isolation and metabolic characteristics of rat and chicken enterocytes.

1. The recent recognition of the metabolic, as opposed to absorptive, functions of the small intestine prompted efforts the improve the preparation of metabolically competent columnar absorptive cells ('enterocytes') and to study their metabolic properties. 2. With this preparation, linear rates of O2 consumption are obtained for 40 min at 37 degrees C that are more than 50% higher than rates reported by other authors. 3. Among added substrates, glucose, glutamine and glutamate are the preferred fuels of respiration. The main nitrogenous products of glutamine metabolism are NH3, alanine and glutamate. Glutamine carbon was not detectable in citrulline or proline, in contrast with the findings of Windmueller & Spaeth [(1974) J. Biol. Chem. 249, 5070-5079] in the vascularly perfused small intestine. 4. The rates of O2 uptake in the presence of glutamine or glutamate are sufficient to account for the formation of the carbon skeleton of alanine from the amino acid substrate, i.e. the ratio of O2 used/alanine formed is greater than 1.5. 5. Added ADP and ATP are rapidly degraded to AMP and IMP to a large extent by release of hydrolytic enzymes from the enterocytes into the medium. 6. Chicken enterocytes isolated by the same method are more stable; linear rates of O2 uptake are maintained for 60-70 min.
Adhesion Molecules-Their Role in Health and Disease

Adhesion molecules play a major role in the recruitment of neutrophils to the site of inflammation. Neutrophils' localization is dynamic and involves multiple steps. In each step a different family of adhesion molecules takes part. The rolling phase is mediated by the selectin family, the E-, L-, and P- selectins, and their ligand, sialyl Lewis X. The next step, the activation and firm adhesion of the neutrophils to the endothelium, is regulated by the integrin family and their ligand, the Ig superfamily. The final step of transendothelial migration is again mediated by these two families of adhesion molecules. Although many in vitro studies were able to show the role of these molecules, their real importance was demonstrated in rare disease states where one of the adhesion molecule was absent. Two adhesion molecule deficiencies were described, both characterized by recurrent infections, defect in wound healing, and marked leukocytosis. Leukocyte adhesion deficiency (LAD) I is caused by a defect in the β subunit of the integrin molecule, whereas in LAD II, the ligand for the selectin, the sialyl Lewis X is markedly decreased. Further insight was also gained with the generation of strains of mice deficient in one or another adhesion molecules (knock-out mice) Exploiting current knowledge on adhesion molecules and their role in health and disease, several trials have been designed to assess the effect of blocking their activity in conditions associated with increased expression of various adhesion molecules.
Intravenous Contrast Media in Uroradiology: Evaluation of Safety and Tolerability in Almost 50,000 Patients

Ojective: To evaluate the frequency of adverse events and possible risk factors after the administration of an intravenous contrast medium (CM), iobitridol, in a large multicentre postmarketing surveillance study. Subjects and Methods: A total of 49,975 patients undergoing intravenous urography were included in this study. A water-soluble, non-ionic CM (iobitridol, 1 ml/kg body weight) was administered. Age, sex, indication for the actual examination and adverse events were documented. Also, high-risk patients were identified. Results: Of the 49,975 patients, 28,336 (56.7%) were males and 21,639 (43.3%) females. Indications for urography were mainly urolithiasis (39.1%), inflammatory diseases (25.6%) and tumours (13.9%). Additionally, 7.4% were risk patients: 1.9% with creatinine >1.5 mg/dl (0.1% were on haemodialysis); 0.8% had a history of previous allergic reactions to CM, 3.7% pre-existing asthma or allergies and 2% other risk factors against CM examination. Only 0.9% of the patients experienced acute adverse events that were non-serious and transient. Less than 0.1% of the patients experienced vomiting, dizziness or cardiovascular problems. Only 1 patient developed an anaphylactic shock but recovered fully under treatment. A χ2 analysis revealed that adverse reactions occurred in patients with pre-existing renal insufficiency or allergies. Significantly more females had contrast-agent-related symptoms compared to men. Patients undergoing urography for urolithiasis had significantly fewer symptoms compared to patients with other indications. Conclusion: Iobitridol is clinically safe and well tolerated in urography as demonstrated in this study of a large patient population, producing mainly minor symptoms as adverse events. However, caution is advised when administering iobitridol to high-risk patients.
Reasoning about knowledge of unawareness revisited

In earlier work [Halpern and Rêgo 2006b], we proposed a logic that extends the Logic of General Awareness of Fagin and Halpern [1988] by allowing quantification over primitive propositions. This makes it possible to express the fact that an agent knows that there are some facts of which he is unaware. In that logic, it is not possible to model an agent who is uncertain about whether he is aware of all formulas. To overcome this problem, we keep the syntax of the earlier paper, but allow models where, with each world, a possibly different language is associated. We provide a sound and complete axiomatization for this logic and show that, under natural assumptions, the quantifier-free fragment of the logic is characterized by exactly the same axioms as the logic of Heifetz, Meier, and Schipper [2008].
Depressive symptoms, life satisfaction and prevalence of sleep disturbances in the general population of Germany: results from the Heinz Nixdorf Recall study

Objectives It appears that not only depression, but also low life satisfaction (LS), is related to sleep disorder in the general population. We evaluate whether the prevalence of sleep disorder attributable to depressed mood is greater among participants with low LS. Setting, participants and outcome measures Analysis of cross-sectional data from 3880 cohort members from the German Heinz Nixdorf Recall study (2006–2008) aged 51–81 years. Standard mood (Center for Epidemiological Studies Depression scale (CES-D) for Depressive symptoms and a single-item life satisfaction measure) and sleep quality (Pittsburgh Sleep Quality Index, PSQI) measures were conducted as part of the survey. Multiple imputation was used to deal with missing data in outcome, exposures or covariates. Relative excess risk for interaction (RERI) and its 95% CIs were estimated using adjusted prevalence ORs. Owing to the study size, the precision of the measures of additive interaction is relatively low. Results We observed an association between depressed mood (5-units increase in CES-D score) (POR=1.7 (95% CI 1.6 to 1.8)) and sleep disorder, and between low LS (not very satisfied vs very satisfied) (POR=1.5 (1.1 to 2.2)) and sleep disorder. Also, we observed a synergistic effect between lower level of LS (not very satisfied) and depressed mood (score ≥16) on prevalence of sleep disorders (RERI=3.7 (−0.2 to 7.1)). Furthermore, these findings were corroborated in sensitivity analysis carried out with the complete case data set and in sex-specific analyses (RERI=5.5 (−0.4 to 11.3), and RERI=2.4 (−2.5 to 7.4) for men and women, respectively). Conclusions Both depressed mood and LS are notably associated with sleep quality, and these relationships are best captured by considering their joint effects. Depression and LS need to be taken into consideration when analysing sleep quality.
Effects of obesity, diabetes, and prior abdominal surgery on resource utilization in liver transplantation: A single‐center study

Obesity, diabetes, and prior abdominal surgery are generally considered to increase the risk of liver transplantation. The aim of the present study was to define the effects of these factors on the immediate outcome after transplantation. Two hundred twenty‐one consecutive liver transplants were analyzed. Twenty‐eight patients were excluded. In the remaining 193 patients [mean age = 52 ± 19 years, body mass index (BMI) = 28.5, Model for End‐Stage Liver Disease (MELD) score at listing = 18.7], the risk from obesity was graded as follows: (0) BMI ≤ 30, (1) BMI = 30‐34.9, (2) BMI = 35‐39.9, and (3) BMI ≥40. The presence of diabetes and prior abdominal surgery were each given 1 point. All the individual scores for obesity, diabetes, and prior surgery were added to produce a composite risk score for each patient. Patients were categorized into 6 risk groups, group 0 having the least risk and group 5 having the highest risk (none of the patients were in group 5). The outcome measures were death, reoperation, readmission within 90 days of transplantation, intensive care unit length of stay (LOS), hospital LOS, and packed red blood cell requirement in 48 hours. The 5 risk score groups with patients were similar in demographics and calculated MELD scores. The outcome measures in high‐risk groups were similar to those in the lowest‐risk group (score = 0). In the Cox regression model for LOS and survival, the composite risk score was not associated with poor survival or prolonged LOS (>3 weeks). Kaplan‐Meier survival curves with log rank testing failed to show any difference in survival among different risk groups. In conclusion, patients with multiple risk factors for poor surgical outcomes can undergo successful transplantation with perioperative outcome and mortality comparable to those of low‐risk patients. Liver Transpl 15: 1519–1524, 2009. © 2009 AASLD.
Tissue-specific turnover and diet-tissue discrimination factors of carbon and nitrogen isotopes of a common forage fish held at two temperatures.

RATIONALE The application of stable isotopes to foraging ecology is dependent on understanding life-history and environmental factors unrelated to diet that may influence isotopic composition. Diet-tissue discrimination factors (DTDFs) and turnover rates will increase the accuracy of isotope-based studies. Furthermore, little consideration has been given to the effects of temperature or life-history stage on isotopic ratios despite the prevalence of variation in temperature and growth rates throughout life. METHODS We measured δ13 C and δ15 N values with an elemental analyzer coupled to a continuous flow isotope ratio mass spectrometer. These values were used to estimate turnover and DTDFs for Emerald Shiners (Notropis atherinoides), a common North American freshwater forage fish. Fish were assigned to a temperature treatment, either 10°C (Low) or 20°C (High), and provided one of three diets (commercial pellet, Artemia salina, or Hemimysis anomala). At regular intervals fish were sampled and the isotopic compositions of whole body and liver tissues were determined. RESULTS Tissue turnover rates for fish fed Artemia were faster for liver than for whole body, but were also influenced by temperature. Turnover occurred faster at higher temperatures for body and liver δ15 N values, but not for δ13 C values. The pellet and Hemimysis treatments were in isotopic equilibrium from the start of the experiment and estimated DTDFs based on these treatments were lower than assumed for Δ15 N (+0.6 to 2.7‰) and variable, but within expected ranges for Δ13 C (-1.9 to +1.5‰). CONCLUSIONS The results for Emerald Shiners differed from commonly made assumptions for applying stable isotopes to ecological questions, possibly related to a bias in the use of juveniles in studies of turnover and DTDFs and assumptions regarding thermal-independence of isotopic relationships. The species-specific DTDF and tissue turnover estimates provided here will inform interpretations of stable isotope data for smaller fish species and improve food-web studies.
Nek1 interacts with Ku80 to assist chromatin loading of replication factors and S-phase progression

NIMA-related kinases (Neks) play divergent roles in mammalian cells. While several Neks regulate mitosis, Nek1 was reported to regulate DNA damage response, centrosome duplication and primary cilium formation. Whether Nek1 participates in cell cycle regulation is not known. Here we report that loss of Nek1 results in severe proliferation defect due to a delay in S-phase of the cell cycle. Nek1-deficient cells show replication stress and checkpoint activation under normal growth conditions. Nek1 accumulates on the chromatin during normal DNA replication. In response to replication stress, Nek1 is further activated for chromatin localization. Nek1 interacts with Ku80 and, in Nek1-deficient cells chromatin localization of Ku80 and several other DNA replication factors is significantly reduced. Thus, Nek1 may facilitate S-phase progression by interacting with Ku80 and regulating chromatin loading of replication factors.
An update on interventions for conduct disorder

Childhood conduct disorder casts a long shadow over adulthood, often leading to antisocial personality, drug misuse, increased rates of psychosis and earlier death. This article reviews a range of effective treatments, and shows what is ineffective. The common theme underlying interventions that work is that they change the environment around the young person, with parent training emerging as the most effective. Medication is largely ineffective. The task now is to enable more of these interventions to be available at a reasonably early age.
Population Structure With Localized Haplotype Clusters

We propose a multilocus version of FST and a measure of haplotype diversity using localized haplotype clusters. Specifically, we use haplotype clusters identified with BEAGLE, which is a program implementing a hidden Markov model for localized haplotype clustering and performing several functions including inference of haplotype phase. We apply this methodology to HapMap phase 3 data. With this haplotype-cluster approach, African populations have highest diversity and lowest divergence from the ancestral population, East Asian populations have lowest diversity and highest divergence, and other populations (European, Indian, and Mexican) have intermediate levels of diversity and divergence. These relationships accord with expectation based on other studies and accepted models of human history. In contrast, the population-specific FST estimates obtained directly from single-nucleotide polymorphisms (SNPs) do not reflect such expected relationships. We show that ascertainment bias of SNPs has less impact on the proposed haplotype-cluster-based FST than on the SNP-based version, which provides a potential explanation for these results. Thus, these new measures of FST and haplotype-cluster diversity provide an important new tool for population genetic analysis of high-density SNP data.
A novel role for the SUMO E3 ligase PIAS1 in cancer metastasis

Tumor metastasis contributes to the grave morbidity and mortality of cancer, but the mechanisms underlying tumor cell invasiveness and metastasis remain incompletely understood. Here, we report that expression of the SUMO E3 ligase PIAS1 suppresses TGFβ-induced activation of the matrix metalloproteinase MMP2 in human breast cancer cells. We also find that knockdown of endogenous PIAS1 or inhibition of its SUMO E3 ligase activity stimulates the ability of TGFβ to induce an aggressive phenotype in three-dimensional breast cancer cell organoids. Importantly, inhibition of the SUMO E3-ligase activity of PIAS1 in breast cancer cells promotes metastases in mice in vivo. Collectively, our findings define a novel and critical role for the SUMO E3 ligase PIAS1 in the regulation of the invasive and metastatic potential of malignant breast cancer cells. These findings advance our understanding of cancer invasiveness and metastasis with potential implications for the development of biomarkers and therapies in breast cancer.
Wind vector inversion from RADARSAT SAR images: a new algorithm

Wind speed and direction are estimated from backscatter /spl sigma//sup 0/ measurements at two adjacent subscenes of RADARSAT-1 synthetic aperture radar (SAR) images, each subscene with slightly different incidence angles. Resultant wind vectors are validated using in situ buoy measurements, and compared with SAR-derived wind vectors obtained by using the wind directions determined from a spectral analysis of SAR images and colocated QuikSCAT measurements, as inputs to a hybrid model wind retrieval model. The implemented hybrid model consists CMOD-IFR2 (applicable to C-band, VV polarization) and the C-band copolarization ratio for Kirchhoff scattering. The new algorithm displays improved skill in wind vector estimation from RADARSAT-1 SAR data.
Oral contraceptives and the risk of venous thrombosis.

In the early 1960s, shortly after the introduction of oral contraceptives, the first case reports appeared describing venous thrombosis and pulmonary emboli in women using this method of birth control. Later, myocardial infarction and stroke were also found to be associated with the use of oral contraceptives. These observations led to numerous epidemiologic and clinical studies of oral-contraceptive pills and thrombosis and subsequently to the development of new oral contraceptives with a lower estrogen content. These lower-estrogen contraceptives were considered safer: changes in hemostatic factors remained small, inconsistent in direction, and mostly within the normal range.1–4 Recent studies have .
Mre11-Rad50 Promotes Rapid Repair of DNA Damage in the Polyploid Archaeon Haloferax volcanii by Restraining Homologous Recombination

Polyploidy is frequent in nature and is a hallmark of cancer cells, but little is known about the strategy of DNA repair in polyploid organisms. We have studied DNA repair in the polyploid archaeon Haloferax volcanii, which contains up to 20 genome copies. We have focused on the role of Mre11 and Rad50 proteins, which are found in all domains of life and which form a complex that binds to and coordinates the repair of DNA double-strand breaks (DSBs). Surprisingly, mre11 rad50 mutants are more resistant to DNA damage than the wild-type. However, wild-type cells recover faster from DNA damage, and pulsed-field gel electrophoresis shows that DNA double-strand breaks are repaired more slowly in mre11 rad50 mutants. Using a plasmid repair assay, we show that wild-type and mre11 rad50 cells use different strategies of DSB repair. In the wild-type, Mre11-Rad50 appears to prevent the repair of DSBs by homologous recombination (HR), allowing microhomology-mediated end-joining to act as the primary repair pathway. However, genetic analysis of recombination-defective radA mutants suggests that DNA repair in wild-type cells ultimately requires HR, therefore Mre11-Rad50 merely delays this mode of repair. In polyploid organisms, DSB repair by HR is potentially hazardous, since each DNA end will have multiple partners. We show that in the polyploid archaeon H. volcanii the repair of DSBs by HR is restrained by Mre11-Rad50. The unrestrained use of HR in mre11 rad50 mutants enhances cell survival but leads to slow recovery from DNA damage, presumably due to difficulties in the resolution of DNA repair intermediates. Our results suggest that recombination might be similarly repressed in other polyploid organisms and at repetitive sequences in haploid and diploid species.
Moonlighting enzymes in parasitic protozoa

SUMMARY Enzymes moonlight in a non-enzymatic capacity in a diverse variety of cellular processes. The discovery of these non-enzymatic functions is generally unexpected, and moonlighting enzymes are known in both prokaryotes and eukaryotes. Importantly, this unexpected multi-functionality indicates that caution might be needed on some occasions in interpreting phenotypes that result from the deletion or gene-silencing of some enzymes, including some of the best known enzymes from classic intermediary metabolism. Here, we provide an overview of enzyme moonlighting in parasitic protists. Unequivocal and putative examples of moonlighting are discussed, together with the possibility that the unusual biological characteristics of some parasites either limit opportunities for moonlighting to arise or perhaps contribute to the evolution of novel proteins with clear metabolic ancestry.
SAR Ship Detection and Self-Reporting Data Fusion Based on Traffic Knowledge

The improvement in Maritime Situational Awareness, the capability of understanding events, circumstances, and activities within and impacting the maritime environment, is nowadays of paramount importance for safety and security. The integration of spaceborne synthetic aperture radar (SAR) data and automatic identification system (AIS) information has the appealing potential to provide a better picture of what is happening at sea by detecting vessels that are not reporting their positioning data or, on the other side, by validating ships detected in satellite imagery. In this letter, we propose a novel architecture that is able to increase the quality of SAR/AIS fusion by exploiting knowledge of historical vessel positioning information. Experimental results are presented, testing the algorithm in the specific area of Dover Strait using real SAR and AIS data.
Community occupational therapy for older patients with dementia and their care givers: cost effectiveness study

Objective To assess the cost effectiveness of community based occupational therapy compared with usual care in older patients with dementia and their care givers from a societal viewpoint. Design Cost effectiveness study alongside a single blind randomised controlled trial. Setting Memory clinic, day clinic of a geriatrics department, and participants’ homes. Patients 135 patients aged ≥65 with mild to moderate dementia living in the community and their primary care givers. Intervention 10 sessions of occupational therapy over five weeks, including cognitive and behavioural interventions, to train patients in the use of aids to compensate for cognitive decline and care givers in coping behaviours and supervision. Main outcome measures Incremental cost effectiveness ratio expressed as the difference in mean total care costs per successful treatment (that is, a combined patient and care giver outcome measure of clinically relevant improvement on process, performance, and competence scales) at three months after randomisation. Bootstrap methods used to determine confidence intervals for these measures. Results The intervention cost €1183 (£848, $1738) (95% confidence interval €1128 (£808, $1657) to €1239 (£888, $1820)) per patient and primary care giver unit at three months. Visits to general practitioners and hospital doctors cost the same in both groups but total mean costs were €1748 (£1279, $2621) lower in the intervention group, with the main cost savings in informal care. There was a significant difference in proportions of successful treatments of 36% at three months. The number needed to treat for successful treatment at three months was 2.8 (2.7 to 2.9). Conclusions Community occupational therapy intervention for patients with dementia and their care givers is successful and cost effective, especially in terms of informal care giving.