Miracle-dz/UniFAR-FTUs huggingface dataset:
A study on the fish diversity of Dhir Beel of Dhubri District of Assam, India

The present study deals with the fish diversity of Dhir Beel of Dhubri District, Assam, India where 72 number of fish species including 4 exotic fish species belonging to 53 genera under 25 families from 8 orders is recorded during the investigation period. Among the recorded fish species 2 species is recorded as vulnerable, another 2 species is data deficient, 7 species is near threatened, 58 species are least concern, 1 species is endangered and other 2 species are not evaluated. The different families recorded are Notopteridae, Clupeidae, Nemacheilidae, Cobitidae, Belonidae, Cyprinidae, Badidae, Ambassidae, Anabantidae, Channidae, Gobiidae, Sisoridae, Amblycipitidae, Pangasidae, Osphronemidae, Nandidae, Bagridae, Clariidae, Chacidae, Heteropneustidae, Schilbeidae, Siluridae, Synbranchidae, Mastacembelidae and Tetraodontidae. The present study shows that Cyprinidae is the most dominant family with 26 number of species contributing about 37% of the 25 recorded family followed by Bagridae (11%). The present study provides an idea about the richness of fish fauna in Dhir beel.
Vector of locally aggregated descriptors with KAZE features for offline signature verification

The widespread use of handwritten signatures for idnetity authentication has resulted in a need for automated verification systems that make use of modern electronic devices (e.g., scanners, cameras, and digitizing tablets). However, there is still significant room for improvement in the performance of these automated systems when compared with that of human analysis, particularly that of forensic document examiners (FDEs), under a wide range of conditions. As the consequences of any inaccuracy in these results can cause serious problems, further research is required to improve the performance. In this study, to improve the performance of offline signature verification while reducing calculation costs, a new approach using vector of locally aggregated descriptors (VLAD) is adopted. The novelty features of the proposed approach include the following: 1) the method considers knowledge recently obtained about the cognitive processes engaged by FDEs to improve performance, 2) it incorporates an approach based on VLAD with KAZE features to mimic the FDEs' cognitive processes for feature extraction, and 3) it applies principal component analysis to VLAD to further reduce calculation costs. The promising performance of the proposed approach is demonstrated through its application to a popular CEDAR signature dataset.
Running head : School support and teacher motivation School support and teacher motivation to implement project-based learning

The present study investigated how school support was related to teachers’ motivation and willingness to persist in project-based learning. The participants were 182 Hong Kong teachers who completed a questionnaire about their school’s support and their motivation to implement project-based learning. The results of structural equation modeling indicated that when teachers perceived their schools as being stronger in collegiality and more supportive of teacher competence and autonomy, they had higher motivation in project-based learning and stronger willingness to persist in this educational innovation. Perceived school support predicted teachers’ attitude for future persistence both directly and indirectly through its influence on teacher motivation. The results suggest that social-contextual factors are important for teacher motivation in the implementation of educational innovations.
Natural Products for the Treatment of Trachoma and Chlamydia trachomatis

The neglected tropical disease (NTD) trachoma is currently the leading cause of eye disease in the world, and the pathogenic bacteria causing this condition, Chlamydia trachomatis, is also the most common sexually transmitted pathogenic bacterium. Although the serovars of this bacterial species typically vary between ocular and genital infections there is a clear connection between genital C. trachomatis infections and the development of trachoma in infants, such that the solutions to these infections are closely related. It is the unique life cycle of the C. trachomatis bacteria which primarily leads to chronic infections and challenges in treatment using conventional antibiotics. This life cycle involves stages of infective elementary bodies (EBs) and reproductive reticulate bodies (RBs). Most antibiotics only target the reproductive RBs and this often leads to the need for prolonged therapy which facilitates the development of drug resistant pathogens. It is through combining several compounds to obtain multiple antimicrobial mechanisms that we are most likely to develop a reliable means to address all these issues. Traditional and ethnobotanical medicine provides valuable resources for the development of novel formulations and treatment regimes based on synergistic and multi-compound therapy. In this review we intend to summarize the existing literature on the application of natural compounds for controlling trachoma and inhibiting chlamydial bacteria and explore the potential for the development of new treatment modalities.
Viability of human corneal endothelium following Optisol-GS storage.

OBJECTIVES To evaluate endothelial viability of human corneas stored in glass vials and in viewing chambers (Alcon) for extended periods, and to compare endothelial viability of Optisol-GS-stored corneas with corneas excised from moist chamber-stored globes. METHODS Endothelial viability was assessed using two staining techniques. Endothelium from stored corneas was stained with trypan blue combined with alizarin red S or stained with calcein AM-ethidium homodimer. Both techniques were used to determine which method is a more sensitive indicator of cytotoxic change. RESULTS Corneas stored 4 to 21 days in Optisol-GS had a rate (mean +/- SE) of endothelial cell damage of 0.57% +/- 0.30% per day in vials and 0.69% +/- 0.27% in chambers. After storage intervals from 4 to 21 days, the Optisol-GS endothelium had an average decrease in viability of 9.5% to 16%. The endothelium of moist chamber eyes had a 44% to 59% decrease in viability after 2 to 5 days. After 24 hours, corneal endothelium of moist chamber eyes had less than 15% decrease in viability. Optisol-GS corneas stored for 35 to 56 days had greater than 50% decrease in endothelial viability. After 67 days, 95% to 100% of endothelial viability was lost. CONCLUSIONS Corneas stored in Optisol-GS through 21 days at 4 degrees C maintain a high percentage of viable endothelial cells. There was no significant difference of endothelial viability between corneas stored in glass vials or in viewing chambers (Alcon). A 50% loss of endothelial viability occurred in moist chamber-stored corneas after 2 days and by 35 days in corneas stored in Optisol-GS.
Effects of pH on Olfactory Behaviours in Male Shore Crabs, Carcinus maenas

Simple Summary Climate change potentially threatens biodiversity, and in a changing environment, it is vitally important that we learn to understand how animals react to the predicted changes. In marine organisms, the sense of smell governs almost all essential behaviours animals exhibit, from finding food and detecting a predator to finding a mating partner. Interpreting animal behaviour when exposed to odour is a complex task, as many factors from seasonality to individuality, fitness, social status, and even weather and water chemistry influence an individual’s response. Here, we examine the impacts of reducing seawater pH levels predicted for the end of the century upon decision-making in male shore crabs when exposed to the female reproductive odour, the female sex pheromone. There is a significant alteration in the responsiveness of male crabs, with large, more sexually active males taking significantly less time to detect and react to females but then showing less sexual mating activity once reaching the female odour. This disruption of olfactory communication can potentially impact the mating and reproductive success of this globally distributed species, showing that even coastal crustaceans that are known to be hardy and able to survive substantial stressors are potentially at risk from altered seawater chemistry associated with climate change. Abstract The effects of climate change are becoming more apparent, predominantly concerning the impacts of ocean acidification on calcifying species. Many marine organisms rely on chemical signals for processes such as foraging for food, predator avoidance, or locating mates. The process of how chemical cues in marine invertebrates function, and how this sensory mode is affected by pH levels, is less researched. We tested the impact of reduced pH (7.6), simulating end-of-the-century predicted average ocean pH, against current oceanic pH conditions (8.2), on the behavioural response of male shore crabs Carcinus maenas to the female sex pheromone bouquet consisting of Uridine–diphosphate (UDP) and Uridine–triphosphate (UTP). While in current pH conditions (8.2), there was a significant increase in sexual interactions in the presence of female pheromone, males showed reduced sexual behaviours at pH 7.6. The crab weight–pH relationship, in which larger individuals respond more intensely sexually in normal pH (8.2), is reversed for both the initial detection and time to locate the cue. These results indicate that lowered pH alters chemical signalling in C. maenas also outside the peak reproductive season, which may need to be taken into account when considering the future management of this globally invasive species.
Gene expression profiling identifies new biological markers of neoplastic germ cells.

BACKGROUND There is only limited knowledge about gene expression in human testicular germ cell tumors of adolescents and adults (TGCTs), and, in particular in its preinvasive stage intratubular germ cell neoplasia unclassified (IGCNU). MATERIALS AND METHODS Global gene expression was studied in 10 invasive human testicular germ cell tumors (TGCTs), 7 intratubular germ cell neoplasia unclassified (IGCNU) and 3 normal testes. The pattern of expression of several genes was studied by immunohistochemistry on tissue microarrays containing 126 TGCTs, IGCNU, normal testes and in 5 fetal testes. RESULTS RAS-related genes (KRAS2, RALA, RAB39B) and various core markers of embryonic stem cells were overexpressed in IGCNU compared to normal testes. CD9, PODXL and centromere-specific histone-H3-like protein CENPA were specifically identified in IGCNU, seminomas, embryonal carcinomas and in fetal gonocytes. Embryonic stem cell regulator SOX2 and downstream targets of the Nodal pathway were up-regulated in embryonal carcinoma only but not in IGCNU/seminoma. Preliminary data revealed that the expression profile of IGCNU is dependent on the histology of the adjacent invasive tumor. CONCLUSION Our study determined the genes involved in early pathogenetic events of neoplastic germ cell formation, provided new insights into genetic pathways driving the transition of embryonal carcinoma and seminoma from IGCNU and identified new biomarkers of neoplastic germ cells such as CD9, CENPA and PODXL.
Poster: Comparing vibro-tactile feedback modes for collision proximity feedback in USAR virtual robot teleoperation

Although multi-sensorial interfaces have been shown to improve user experience in different settings in Virtual Reality, these interfaces are not yet fully explored in urban search-and-rescue robot teleoperation. This paper presents a study on the performance effects of adding different types of vibro-tactile collision proximity feedback to a virtual robot's interface during a search task in a virtual environment. Results indicate that the addition of vibro-tactile feedback causes positive performance effects, especially for the intensity variation mode. Nevertheless, it also has a comfort impact for prolonged use.
A decade of shaping the futures of polar early career researchers: A legacy of the International Polar Year

Abstract The Association of Polar Early Career Scientists (APECS) is an important legacy of the International Polar Year (IPY). APECS continues to foster engagement in education, outreach and communication (EOC) activities relating to the polar regions and provide training for early career researchers (ECRs). We highlight opportunities for training, leadership and skills development, such as the annual Polar Weeks and Antarctica Day celebrations. Participation and engagement in EOC activities actively contributes to career development by enabling ECRs to develop valuable soft skills such as networking, communication and interdisciplinary knowledge. A pilot survey on EOC engagement highlighted that those who organise events also gain leadership skills such as team management. We discuss several factors contributing to the success of APECS in training the next generation of polar leaders. These include the geographical rather than discipline-specific focus of the organisation, utilisation of online resources, including social media, and the strong links with partner organisations. These examples demonstrate how the EOC legacy of IPY has continued due to APECS’ targeted efforts to create EOC opportunities and provide skills and leadership training for ECRs.
Characterizations of scoring methods for preference aggregation

The paper surveys more than forty characterizations of scoring methods for preference aggregation and contains one new result. A general scoring operator is {\it self-consistent} if alternative $i$ is assigned a greater score than $j$ whenever $i$ gets no worse (better) results of comparisons and its `opponents' are assigned respectively greater (no smaller) scores than those of $j$. We prove that self-consistency is satisfied if and only if the application of a scoring operator reduces to the solution of a homogeneous system of algebraic equations with a monotone function on the left-hand side.
Analysis and Visualization of Classifier Performance: Comparison under Imprecise Class and Cost Distributions

Applications of inductive learning algorithms to real-world data mining problems have shown repeatedly that using accuracy to compare classifiers is not adequate because the underlying assumptions rarely hold. We present a method for the comparison of classifier performance that is robust to imprecise class distributions and misclassification costs. The ROC convex hull method combines techniques from ROC analysis, decision analysis and computational geometry, and adapts them to the particulars of analyzing learned classifiers. The method is efficient and incremental, minimizes the management of classifier performance data, and allows for clear visual comparisons and sensitivity analyses.
Screening for Cystic Fibrosis

ABSTRACT. A neonatal screening program for CF by determination of albumin in meconium was performed in the north eastern part of the Netherlands from 1973 to 1979. In this period 94043 newborns were screened and 116953 were not. A follow‐up study of CF patients in the above cohorts was started in 1980. The purposes of this study were to evaluate the effects of early diagnosis and treatment in CF patients by comparing the outcome in the two groups of patients. Although the results indicate that very early diagnosis and treatment have a beneficial effect on outcome, more studies are needed before a definite answer can be given as to whether or not mass neonatal screening should be started.
Content-Based Image Retrieval Using Spatial Layout Information in Brain Tumor T1-Weighted Contrast-Enhanced MR Images

This study aims to develop content-based image retrieval (CBIR) system for the retrieval of T1-weighted contrast-enhanced MR (CE-MR) images of brain tumors. When a tumor region is fed to the CBIR system as a query, the system attempts to retrieve tumors of the same pathological category. The bag-of-visual-words (BoVW) model with partition learning is incorporated into the system to extract informative features for representing the image contents. Furthermore, a distance metric learning algorithm called the Rank Error-based Metric Learning (REML) is proposed to reduce the semantic gap between low-level visual features and high-level semantic concepts. The effectiveness of the proposed method is evaluated on a brain T1-weighted CE-MR dataset with three types of brain tumors (i.e., meningioma, glioma, and pituitary tumor). Using the BoVW model with partition learning, the mean average precision (mAP) of retrieval increases beyond 4.6% with the learned distance metrics compared with the spatial pyramid BoVW method. The distance metric learned by REML significantly outperforms three other existing distance metric learning methods in terms of mAP. The mAP of the CBIR system is as high as 91.8% using the proposed method, and the precision can reach 93.1% when the top 10 images are returned by the system. These preliminary results demonstrate that the proposed method is effective and feasible for the retrieval of brain tumors in T1-weighted CE-MR Images.
Tagging a Hebrew Corpus: the Case of Participles

We report on an effort to build a corpus of Modern Hebrew tagged with part-of-speech and morphology. We designed a tagset specific to Hebrew while focusing on four aspects: the tagset should be consistent with common linguistic knowledge; there should be maximal agreement among taggers as to the tags assigned to maintain consistency; the tagset should be useful for machine taggers and learning algorithms; and the tagset should be effective for applications relying on the tags as input features. In this paper, we illustrate these issues by explaining our decision to introduce a tag for beinoni forms in Hebrew. We explain how this tag is defined, and how it helped us improve manual tagging accuracy to a high-level, while improving automatic tagging and helping in the task of syntactic chunking.
Patterns of Geographic Expansion of Aedes aegypti in the Peruvian Amazon

Background and Objectives In the Peruvian Amazon, the dengue vector Aedes aegypti is abundant in large urban centers such as Iquitos. In recent years, it has also been found in a number of neighboring rural communities with similar climatic and socioeconomic conditions. To better understand Ae. aegypti spread, we compared characteristics of communities, houses, and containers in infested and uninfested communities. Methods We conducted pupal-demographic surveys and deployed ovitraps in 34 communities surrounding the city of Iquitos. Communities surveyed were located along two transects: the Amazon River and a 95km highway. We calculated entomological indices, mapped Ae. aegypti presence, and developed univariable and multivariable logistic regression models to predict Ae. aegypti presence at the community, household, or container level. Results Large communities closer to Iquitos were more likely to be infested with Ae. aegypti. Within infested communities, houses with Ae. aegypti had more passively-filled containers and were more often infested with other mosquito genera than houses without Ae. aegypti. For containers, large water tanks/drums and containers with solar exposure were more likely to be infested with Ae. aegypti. Maps of Ae. aegypti presence revealed a linear pattern of infestation along the highway, and a scattered pattern along the Amazon River. We also identified the geographical limit of Ae. aegypti expansion along the highway at 19.3 km south of Iquitos. Conclusion In the Peruvian Amazon, Ae. aegypti geographic spread is driven by human transportation networks along rivers and highways. Our results suggest that urban development and oviposition site availability drive Ae. aegypti colonization along roads. Along rivers, boat traffic is likely to drive long-distance dispersal via unintentional transport of mosquitoes on boats.
PhoB Regulates Motility, Biofilms, and Cyclic di-GMP in Vibrio cholerae

ABSTRACT Signaling through the second messenger cyclic di-GMP (c-di-GMP) is central to the life cycle of Vibrio cholerae. However, relatively little is known about the signaling mechanism, including the specific external stimuli that regulate c-di-GMP concentration. Here, we show that the phosphate responsive regulator PhoB regulates an operon, acgAB, which encodes c-di-GMP metabolic enzymes. We show that induction of acgAB by PhoB positively regulates V. cholerae motility in vitro and that PhoB regulates expression of acgAB at late stages during V. cholerae infection in the infant mouse small intestine. These data support a model whereby PhoB becomes activated at a late stage of infection in preparation for dissemination of V. cholerae to the aquatic environment and suggest that the concentration of exogenous phosphate may become limited at late stages of infection.
Kernel discriminant analysis for environmental sound recognition based on acoustic subspace

In this paper, we propose an effective discriminant subspace learning framework to recognize the environmental sounds. Firstly, Gabor transform is adopted to characterize the time-frequency distributions of environmental sounds. We further encode the prominent time-frequency patterns with low rank representation by extracting the subspace from Gabor spectrogram. Unlike conventional sound recognition schemes that are mostly based on acoustic feature vectors, we treat the acoustic subspaces (matrixes) as basic elements for recognition, retaining rich temporal-spectral contextual information. At recognition stage, we employ kernel Fisher discriminant analysis to effectively exploit the class conditional distributions of environmental sounds which are favorable for performing multi-class classification. With a well developed kernel function, the proposed approach achieved superior recognition performance on RWCP sound scene database, compared with the existing methods.
Reconstructing Chain Functions in Genetic Networks

Deciphering the mechanisms that control gene expression in the cell is a fundamental question in molecular biology. This task is complicated by the large number of possible regulation relations in the cell, and the relatively small amount of available experimental data. Recently, a new class of regulation functions called chain functions was suggested. Many signal transduction pathways can be accurately modeled by chain functions, and the restriction to chain functions greatly reduces the vast search space of regulation relations. In this paper we study the computational problem of reconstructing a chain function using a minimum number of experiments, in each of which only few genes are perturbed. We give optimal reconstruction schemes for several scenarios and show their application in reconstructing the regulation of galactose utilization in yeast.
Vertebrate development requires ARVCF and p120 catenins and their interplay with RhoA and Rac

Using an animal model system and depletion-rescue strategies, we have addressed the requirement and functions of armadillo repeat gene deleted in velo-cardio-facial syndrome (ARVCF) and p120 catenins in early vertebrate embryogenesis. We find that xARVCF and Xp120 are essential to development given that depletion of either results in disrupted gastrulation and axial elongation, which are specific phenotypes based on self-rescue analysis and further criteria. Exogenous xARVCF or Xp120 cross-rescued depletion of the other, and each depletion was additionally rescued with (carefully titrated) dominant-negative RhoA or dominant-active Rac. Although xARVCF or Xp120 depletion did not appear to reduce the adhesive function of C-cadherin in standard cell reaggregation and additional assays, C-cadherin levels were somewhat reduced after xARVCF or Xp120 depletion, and rescue analysis using partial or full-length C-cadherin constructs suggested contributory effects on altered adhesion and signaling functions. This work indicates the required functions of both p120 and ARVCF in vertebrate embryogenesis and their shared functional interplay with RhoA, Rac, and cadherin in a developmental context.