Miracle-dz/UniFAR-FTUs huggingface dataset:
Real-Time American Sign Language Recognition System Using Surface EMG Signal

Sign Language Recognition (SLR) system is a method which allow deaf people to communicate with society. In this study, Real-Time Sign Language recognition system was proposed by using the surface Electromyography (sEMG). To this purpose, sEMG data acquired from subject right forearm for all twenty six American Sign Language gestures. Raw sEMG data was filtered, feature extracted and fed into classification. Support Vector Machine (SVM) with one vs. all approach was used for multi class classification. The experiment result of offline system is reaching a recognition rate of 91. % accuracy and real-time system has a recognition rate of 82.3% accuracy. The results of the proposed system shows that sEMG signal can be used for Real-Time SLR systems.
Enhancement of self-perceived mate value precedes a shift in men's preferred mating strategy.

Seventy-three participants (40 women, 33 men) completed questionnaires concerning their self-perceived mate value (SPMV) and preferred mating strategy in two separate sessions, with baseline measures collected during the first stage. At the commencement of the second testing session, participants were provided with a fictitious positive assessment of their worth as a mate in an attempt to manipulate their SPMV upward. It was hypothesized that higher SPMV and the endorsement or pursuit of casual sexual activity would be positively related in men and that raising men's SPMV would increase the bias toward this mating strategy. A strong relationship between SPMV and mating strategy was not expected in women, nor was increasing SPMV expected to alter women's mating strategy. As predicted, high baseline levels of SPMV were positively related with the endorsement of casual sexual activity in men, and an elevation in men's SPMV following the manipulation was associated with the increased choice of this mating strategy. Moreover, it appeared that the rise in SPMV specifically, rather than an increase in global self-esteem, was related to the shift in mating strategy. Little evidence was found to suggest that baseline SPMV or increases to SPMV were related to women’s endorsement or pursuit of casual versus more committed sexual relationships.
Which AIS based scoring system is the best predictor of outcome in orthopaedic blunt trauma patients?

BACKGROUND Abbreviated Injury Scale (AIS)-based systems-the Injury Severity Score (ISS), New Injury Severity Score (NISS), and AISmax-are used to assess trauma patients. The merits of each in predicting outcome are controversial. METHODS A large prospective database was used to assess their predictive capacity using receiver operator characteristic curves. RESULTS In all, 10,062 adult, blunt-trauma patients met the inclusion criteria. All systems were significant outcome predictors for sepsis, multiple organ failure (MOF), length of hospital stay, length of intensive care unit (ICU) admission and mortality (p < 0.0001). NISS was a significantly better predictor than the ISS for mortality (p < 0.0001). NISS was equivalent to the AISmax for mortality prediction and superior in patients with orthopaedic injuries. NISS was significantly better for sepsis, MOF, ICU stay, and total hospital stay (p < 0.0001). CONCLUSIONS NISS is superior or equivalent to the ISS and AISmax for prediction of all investigated outcomes in a population of blunt trauma patients. As NISS is easier to calculate, its use is recommended to stratify patients for clinical and research purposes.
Integrin Engagement by the Helical RGD Motif of the Helicobacter pylori CagL Protein Is Regulated by pH-induced Displacement of a Neighboring Helix*

Background: An Arg-Gly-Asp (RGD) motif in CagL anchors Helicobacter pylori to host cell integrins. Results: Reduced pH causes a conformational change in CagL that buries the RGD motif. Conclusion: A pH-induced conformational change regulates CagL RGD binding to host cells. Significance: Regulation of the RGD-integrin interaction prevents premature host cell attachment. Arginine-aspartate-glycine (RGD) motifs are recognized by integrins to bridge cells to one another and the extracellular matrix. RGD motifs typically reside in exposed loop conformations. X-ray crystal structures of the Helicobacter pylori protein CagL revealed that RGD motifs can also exist in helical regions of proteins. Interactions between CagL and host gastric epithelial cell via integrins are required for the translocation of the bacterial oncoprotein CagA. Here, we have investigated the molecular basis of the CagL-host cell interactions using structural, biophysical, and functional analyses. We solved an x-ray crystal structure of CagL that revealed conformational changes induced by low pH not present in previous structures. Using analytical ultracentrifugation, we found that pH-induced conformational changes in CagL occur in solution and not just in the crystalline environment. By designing numerous CagL mutants based on all available crystal structures, we probed the functional roles of CagL conformational changes on cell surface integrin engagement. Together, our data indicate that the helical RGD motif in CagL is buried by a neighboring helix at low pH to inhibit CagL binding to integrin, whereas at neutral pH the neighboring helix is displaced to allow integrin access to the CagL RGD motif. This novel molecular mechanism of regulating integrin-RGD motif interactions by changes in the chemical environment provides new insight to H. pylori-mediated oncogenesis.
The cognition of non-verbal sound in dementia

A growing body of functional imaging studies provides considerable insight into cortical networks for non-verbal auditory processing. However, determination of the essential cognitive and anatomical components of these networks depends upon the study of damaged brains, and yet, auditory neuropsychology is little studied and poorly understood. Whilst naturally occurring lesions that selectively disrupt auditory processes are rare, increasing evidence suggests that degenerative diseases target functional networks implicated in non-verbal auditory processing. Furthermore, a small but significant auditory neuropsychological literature shows that dementia can lead to impairments of non-verbal sound processing. This thesis comprises a series of studies designed to reveal deficits of non-verbal auditory processing in four distinct dementia syndromes: three variants of primary progressive aphasia (semantic dementia, SD; progressive non-fluent aphasia, PNFA; logopenic aphasia, LPA), and typical Alzheimer’s disease (AD). The first two studies (Chapters 2 and 3) involve the development of two novel non-verbal auditory neuropsychological batteries, including tests to examine perceptual property, apperceptive, and semantic stages of processing; the subsequent use of these batteries reveals syndrome-specific profiles of non-verbal auditory impairment. Next, a detailed psychoacoustic assessment of two single cases (Chapter 4) provides evidence for specific disorders of auditory property and object processing. A further study (Chapter 5) comprises the examination of non-verbal auditory object processing in SD using functional magnetic resonance imaging (fMRI); results suggest that auditory object recognition depends upon a distributed temporo-parietal network involving closely associated mechanisms of perceptual and semantic processing. Finally, novel neuropsychological assessments are used to reveal the selective impairment of auditory scene analysis in AD (Chapter 6). Together, these neuropsychological findings provide novel insights into the organisation of cortical networks for non-verbal auditory cognition.
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Intrinsic plasticity (IP) refers to a neuron's ability to regulate its firing activity by adapting its intrinsic excitability. Previously, we showed that model neurons combining a model of IP based on information theory with Hebbian synaptic plasticity can adapt their weight vector to discover heavy-tailed directions in the input space. In this paper we show how a network of such units can solve a standard non-linear independent component analysis (ICA) problem. We also present a model for the formation of maps of oriented receptive fields in primary visual cortex and compare our results with those from ICA. Together, our results indicate that intrinsic plasticity that tries to locally maximize information transmission at the level of individual neurons may play an important role for the learning of efficient sensory representations in the cortex.
Molecular Imaging with 11C-PD153035 PET/CT Predicts Survival in Non–Small Cell Lung Cancer Treated with EGFR-TKI: A Pilot Study

Outcomes are suboptimal when molecularly targeted therapies are used in patient populations unselected for the molecular target. This pilot study examines the correlation of PET using 11C-labeled 4-N-(3-bromoanilino)-6,7-dimethoxyquinazoline (11C-PD153035), an imaging biomarker of epidermal growth factor receptor (EGFR), with outcomes in patients with non–small cell lung cancer (NSCLC) treated with the EGFR tyrosine kinase inhibitor erlotinib. Methods: Patients with advanced chemotherapy-refractory NSCLC were prospectively enrolled on a trial of erlotinib at a dose of 150 mg daily and imaged by 11C-PD153035 PET/CT at baseline, after 1–2 wk, and after 6 wk from the start of treatment. Overall survival and progression-free survival (OS and PFS, respectively) times were correlated with the 11C-PD153035 standardized uptake value (SUV) at each of the imaging times. Results: Twenty-one patients were enrolled. Follow-up to progression was complete in all patients and to death in 18 of 21. By Cox regression analysis, baseline maximum SUV correlated strongly with OS and PFS (hazard ratio = 0.40, P = 0.002, and hazard ratio = 0.044, P < 0.001, respectively) independent of histology. Patients with higher maximum SUV (≥median) survived more than twice as long as patients with lower maximum SUV (median OS = 11.4 vs. 4.6 mo, P = 0.002; PFS = 4.4 vs. 1.8 mo, P < 0.001). However, 11C-PD153035 uptake on follow-up scans was less well correlated with survival. Conclusion: Our preliminary results suggest 11C-PD153035 PET/CT may be a noninvasive and rapid method for identifying patients with refractory advanced NSCLC of adenocarcinoma or squamous histology likely to respond to the EGFR tyrosine kinase inhibitor but not for monitoring treatment response.
Temporal Coordination of Carbohydrate Metabolism during Mosquito Reproduction

Hematophagous mosquitoes serve as vectors of multiple devastating human diseases, and many unique physiological features contribute to the incredible evolutionary success of these insects. These functions place high-energy demands on a reproducing female mosquito, and carbohydrate metabolism (CM) must be synchronized with these needs. Functional analysis of metabolic gene profiling showed that major CM pathways, including glycolysis, glycogen and sugar metabolism, and citrate cycle, are dramatically repressed at post eclosion (PE) stage in mosquito fat body followed by a sharply increase at post-blood meal (PBM) stage, which were also verified by Real-time RT-PCR. Consistent to the change of transcript and protein level of CM genes, the level of glycogen, glucose and trehalose and other secondary metabolites are also periodically accumulated and degraded during the reproductive cycle respectively. Levels of triacylglycerols (TAG), which represent another important energy storage form in the mosquito fat body, followed a similar tendency. On the other hand, ATP, which is generated by catabolism of these secondary metabolites, showed an opposite trend. Additionally, we used RNA interference studies for the juvenile hormone and ecdysone receptors, Met and EcR, coupled with transcriptomics and metabolomics analyses to show that these hormone receptors function as major regulatory switches coordinating CM with the differing energy requirements of the female mosquito throughout its reproductive cycle. Our study demonstrates how, by metabolic reprogramming, a multicellular organism adapts to drastic and rapid functional changes.
The inhibition of in vivo tumorigenesis of osteosarcoma (OS)-732 cells by antisense human osteopontin RNA

Osteopontin (OPN) is a secreted, non-collagenous, sialic acid-rich protein which functions by mediating cell-matrix interactions and cellular signaling via binding with integrins and CD44 receptors. An increasing number of studies have shown that OPN plays an important role in controlling cancer progression and metastasis. OPN was found to be expressed in many human cancer types, and in some cases, its over-expression was shown to be directly associated with poor patient prognosis. In vitro cancer cell line and animal model studies have clearly indicated that OPN can function in regulating the cell signaling that ultimately controls the oncogenic potential of various cancers. Previous studies in our laboratory demonstrated that OPN is highly expressed in human osteosarcoma (OS) cell line OS-732. In this study, we successfully reduced the tumorigenecity of OS-732 cells xenotransplanted into nude mice, using the antisense human OPN (hOPN) RNA expression vector.
Detection of protease-resistant cervid prion protein in water from a CWD-endemic area

Chronic wasting disease (CWD) is the only known transmissible spongiform encephalopathy affecting free-ranging wildlife. Although the exact mode of natural transmission remains unknown, substantial evidence suggests that prions can persist in the environment, implicating components thereof as potential prion reservoirs and transmission vehicles. CWD-positive animals may contribute to environmental prion load via decomposing carcasses and biological materials including saliva, blood, urine and feces. Sensitivity limitations of conventional assays hamper evaluation of environmental prion loads in soil and water. Here we show the ability of serial protein misfolding cyclic amplification (sPMCA) to amplify a 1.3 x 10-7 dilution of CWD-infected brain homogenate spiked into water samples, equivalent to approximately 5 x 107 protease resistant cervid prion protein (PrPCWD) monomers. We also detected PrPCWD in one of two environmental water samples from a CWD endemic area collected at a time of increased water runoff from melting winter snow pack, as well as in water samples obtained concurrently from the flocculation stage of water processing by the municipal water treatment facility. Bioassays indicated that the PrPCWD detected was below infectious levels. These data demonstrate detection of very low levels of PrPCWD in the environment by sPMCA and suggest persistence and accumulation of prions in the environment that may promote CWD transmission.
Dissociative responses to conscious and non-conscious fear impact underlying brain function in post-traumatic stress disorder

Background Dissociative reactions in post-traumatic stress disorder (PTSD) have been regarded as strategic responses that limit arousal. Neuroimaging studies suggest distinct prefrontal responses in individuals displaying dissociative and hyperarousal responses to threat in PTSD. Increased prefrontal activity may reflect enhanced regulation of limbic arousal networks in dissociation. If dissociation is a higher-order regulatory response to threat, there may be differential responses to conscious and automatic processing of threat stimuli. This study addresses this question by examining the impact of dissociation on fear processing at different levels of awareness. Method Functional magnetic resonance imaging (fMRI) with a 1.5-T scanner was used to examine activation to fearful (versus neutral) facial expressions during consciously attended and non-conscious (using backward masking) conditions in 23 individuals with PTSD. Activation in 11 individuals displaying non-dissociative reactions was compared to activation in 12 displaying dissociative reactions to consciously and non-consciously perceived fear stimuli. Results Dissociative PTSD was associated with enhanced activation in the ventral prefrontal cortex for conscious fear, and in the bilateral amygdala, insula and left thalamus for non-conscious fear compared to non-dissociative PTSD. Comparatively reduced activation in the dissociative group was apparent in dorsomedial prefrontal regions for conscious fear faces. Conclusions These findings confirm our hypotheses of enhanced prefrontal activity to conscious fear and enhanced activity in limbic networks to non-conscious fear in dissociative PTSD. This supports the theory that dissociation is a regulatory strategy invoked to cope with extreme arousal in PTSD, but this strategy appears to function only during conscious processing of threat.
The Impact of Denial and Repressive Style on Information Gain and Rehabilitation Outcomes in Myocardial Infarction Patients

&NA; The impact of denial, repressive style, and social desirability on information gained during hospitalization and their effects on recovery were studied in 30 patients with documented myocardial infarction (MI). Using three scores of cardiac knowledge as dependent variables, three significant findings emerged: 1) patients who denied more gained less information about heart anatomy and physiology; 2) patients who scored high on social desirability gained less information about symptoms indicating heart problems and activities appropriate for recovery; and 3) patients who were repressors gained less information about heart disease risk factors. Twenty‐four of the 30 patients completed a survey of functioning 6 months after discharge. Dividing patients into four groups representing a match or mismatch between repressive style and information level, it was found that 1) repressors with high risk factor information reported more complications and poorer psychomedical functioning, and 2) sensitizers with low risk factor information reported poorer social functioning.
Clinical Validation of a Fully Automated 17β-Estradiol and Progesterone Assay (VIDAS®) for Use in Monitoring Assisted Reproduction Treatment

Abstract Measurement of serum estradiol (E2) and progesterone (PRG) allows monitoring of follicular growth and prediction of the day of ovulation in natural cycles. In combination with vaginal ultrasonography, serum E2 and PRG are used for the monitoring of ovarian superovulation for assisted reproduction. We carried out a clinical evaluation of the VIDAS E2 and PRG assays on a fully automated random access analyzer (miniVIDAS, bio-Mérieux) by retrospective analysis of frozen serum samples obtained from 16 natural cycles monitored for frozen embryo transfer (FRET) and in superovulation cycles. The superovulation cycles consisted of 28 long gonadotropin-releasing hormone (GnRH) agonist protocol cycles and 15 GnRH antagonist protocol cycles. In FRET cycles we found a good correlation between serum E2 and the diameter of the dominant follicle measured by ovarian ultrasonography. Serum E2 values measured throughout the cycles and follicular phase PRG values were representative of normo-ovulatory cycles. In GnRH agonist long protocols, we found serum E2 and PRG values compatible with castration levels induced by pituitary desensitization. During gonadotropin treatment a close, highly significant correlation was observed between serum E2 and ultrasonographic follicle measurements with both GnRH analogue protocols. Serum PRG measured for 5 days prior to human chorionic gonadotropin (hCG) administration in the agonist cycles was compatible with the absence of premature luteinization. In conclusion, VIDAS E2 and PRG assays are precise and sensitive tools for evaluating natural cycles (based on the results in FRET cycles) and for monitoring ovarian superovulation.
Towards Principled Unsupervised Learning

General unsupervised learning is a long-standing conceptual problem in machine learning. Supervised learning is successful because it can be solved by the minimization of the training error cost function. Unsupervised learning is not as successful, because the unsupervised objective may be unrelated to the supervised task of interest. For an example, density modelling and reconstruction have often been used for unsupervised learning, but they did not produced the sought-after performance gains, because they have no knowledge of the supervised tasks. In this paper, we present an unsupervised cost function which we name the Output Distribution Matching (ODM) cost, which measures a divergence between the distribution of predictions and distributions of labels. The ODM cost is appealing because it is consistent with the supervised cost in the following sense: a perfect supervised classifier is also perfect according to the ODM cost. Therefore, by aggressively optimizing the ODM cost, we are almost guaranteed to improve our supervised performance whenever the space of possible predictions is exponentially large. We demonstrate that the ODM cost works well on number of small and semi-artificial datasets using no (or almost no) labelled training cases. Finally, we show that the ODM cost can be used for one-shot domain adaptation, which allows the model to classify inputs that differ from the input distribution in significant ways without the need for prior exposure to the new domain.
Canonical and Non-Canonical Aspects of JAK–STAT Signaling: Lessons from Interferons for Cytokine Responses

Janus kinase (JAK)–signal transducer and activator of transcription (STAT) signal transduction mediates cytokine responses. Canonical signaling is based on STAT tyrosine phosphorylation by activated JAKs. Downstream of interferon (IFN) receptors, activated JAKs cause the formation of the transcription factors IFN-stimulated gene factor 3 (ISGF3), a heterotrimer of STAT1, STAT2 and interferon regulatory factor 9 (IRF9) subunits, and gamma interferon-activated factor (GAF), a STAT1 homodimer. In recent years, several deviations from this paradigm were reported. These include kinase-independent JAK functions as well as extra- and intranuclear activities of U-STATs without phosphotyrosines. Additionally, transcriptional control by STAT complexes resembling neither GAF nor ISGF3 contributes to transcriptome changes in IFN-treated cells. Our review summarizes the contribution of non-canonical JAK–STAT signaling to the innate antimicrobial immunity imparted by IFN. Moreover, we touch upon functions of IFN pathway proteins beyond the IFN response. These include metabolic functions of IRF9 as well as the regulation of natural killer cell activity by kinase-dead TYK2 and different phosphorylation isoforms of STAT1.