Miracle-dz/UniFAR-FTUs huggingface dataset:
Using Credible Advice to Overcome Framing Effects

A framing effect occurs when different, but logically equivalent, words or phrases (e.g., 10% employment of 90% unemployment) cause individuals to alter their decisions. Demonstrations of framing effects challenge a fundamental tenet of rational choice theory and suggest that public opinion is so malleable that it cannot serve as a useful guide to policymakers. In this article I argue that most previous work overstates the ubiquity of framing effects because it forces experimental participants to make decisions in isolation from social contact and context. I present two experiments where I show that some widely known framing effects greatly diminish and sometimes disappear when participants are given access to credible advice about how to decide. I discuss the implications of my findings for rational choice theory, and public opinion and public policy. Copyright 2001 by Oxford University Press.
Neuropathological Changes in a Mouse Model of Progressive Myoclonus Epilepsy: Cystatin B Deficiency and Unverricht‐Lundborg Disease

Progressive myoclonus epilepsy of the Unverricht-Lundborg type (EPM1) is a recessively inherited neurodegenerative disease caused by loss-of-function mutations in the gene encoding cystatin B, a cysteine protease inhibitor. Mice with disruptions in this gene display myoclonic seizures, progressive ataxia, and cerebellar pathology closely paralleling EPM1 in humans. To provide further insight into our understanding of EPM1, we report pathological findings in brains from cystatin B-deficient mice. In addition to confirming the loss of cerebellar granular cell neurons by apoptosis, we identified additional neuronal apoptosis in young mutant mice (3–4 months old) within the hippocampal formation and entorhinal cortex. In older mutant mice (16–18 months old), there was also gliosis most marked in the presubiculum and parasubiculum of the hippocampal formation, as well as the entorhinal cortex, neocortex, and striatum. Furthermore, widespread white matter gliosis was also noted, which may be a secondary phenomenon. Within the cerebral cortex, cellular atrophy was a prominent finding in the superficial neurons of the prosubiculum. Finally, we show that mutant mice in either a “seizure-prone” or “seizure-resistant” genetic background display similar neuropathological changes. These findings indicate that neuronal atrophy is an important consequence of cystatin-B deficiency independent of seizure events, suggesting a physiological role for this protein in the maintenance of normal neuronal structure.
Chronic lymphocytic leukaemia: prognostic value of lymphocyte morphological subtypes. A multivariate survival analysis in 146 patients

Summary. Among other patient and disease characteristics, different morphological lymphocyte subtypes were analysed in 146 patients with chronic lymphocytic leukaemia (CLL) to establish their clinical significance and prognostic value. The univariate analysis selected, among other well‐known variables, the following lymphocyte subtypes as significant in prognosis: prolymphocytes, granulated lymphocytes, cleaved lymphocytes and small‐size lymphocytes. The presence of prolymphocytes and cleaved lymphocytes was correlated with a poor prognosis, whereas granular lymphocytes and small‐size lymphocytes were related to a good prognosis. A multivariate regression analysis showed that, besides clinical stages, haemoglobin level. WBC count, age, percentage of bone marrow erythroid cells, and sex, only prolymphocytes had independent prognostic significance. Prolymphocyte percentage correlated positively with characteristics expressing tumour mass such as WBC count, blood absolute lymphocyte count, serum lactate dehydrogenase level. number of enlarged lymph nodes, splenomegaly, and a high number of lymphocytes in bone marrow aspirate. Finally, a prolymphocyte threshold of 5 × 109/l was found to be useful not only to separate two different groups of patients in the whole series but also in Rai's stages II and III + IV, and in Binet's stages A and C.
Altered Resting-State Frontoparietal Control Network in Children with Attention-Deficit/Hyperactivity Disorder

Abstract The frontoparietal control network, anatomically and functionally interposed between the dorsal attention network and default mode network, underpins executive control functions. Individuals with attention-deficit/hyperactivity disorder (ADHD) commonly exhibit deficits in executive functions, which are mainly mediated by the frontoparietal control network. Involvement of the frontoparietal control network based on the anterior prefrontal cortex in neurobiological mechanisms of ADHD has yet to be tested. We used resting-state functional MRI and seed-based correlation analyses to investigate functional connectivity of the frontoparietal control network in a sample of 25 children with ADHD (7–14 years; mean 9.94±1.77 years; 20 males), and 25 age-, sex-, and performance IQ-matched typically developing (TD) children. All participants had limited in-scanner head motion. Spearman’s rank correlations were used to test the associations between altered patterns of functional connectivity with clinical symptoms and executive functions, measured by the Conners’ Continuous Performance Test and Spatial Span in the Cambridge Neuropsychological Test Automated Battery. Compared with TD children, children with ADHD demonstrated weaker connectivity between the right anterior prefrontal cortex (PFC) and the right ventrolateral PFC, and between the left anterior PFC and the right inferior parietal lobule. Furthermore, this aberrant connectivity of the frontoparietal control network in ADHD was associated with symptoms of impulsivity and opposition-defiance, as well as impaired response inhibition and attentional control. The findings support potential integration of the disconnection model and the executive dysfunction model for ADHD. Atypical frontoparietal control network may play a pivotal role in the pathophysiology of ADHD. (JINS, 2015, 21, 271–284)
Numerical Methods for Pulmonary Image Registration

Due to complexity and invisibility of human organs, diagnosticians need to analyze medical images to determine where the lesion region is, and which kind of disease is, in order to make precise diagnoses. For satisfying clinical purposes through analyzing medical images, registration plays an essential role. For instance, in Image-Guided Interventions (IGI) and computer-aided surgeries, patient anatomy is registered to preoperative images to guide surgeons complete procedures. Medical image registration is also very useful in surgical planning, monitoring disease progression and for atlas construction. Due to the significance, the theories, methods, and implementation method of image registration constitute fundamental knowledge in educational training for medical specialists. In this chapter, we focus on image registration of a specific human organ, i.e. the lung, which is prone to be lesioned. For pulmonary image registration, the improvement of the accuracy and how to obtain it in order to achieve clinical purposes represents an important problem which should seriously be addressed. In this chapter, we provide a survey which focuses on the role of image registration in educational training together with the state-of-the-art of pulmonary image registration. In the first part, we describe clinical applications of image registration introducing artificial organs in Simulation-based Education. In the second part, we summarize the common methods used in pulmonary image registration and analyze popular papers to obtain a survey of pulmonary image registration.
Human trypanolytic factor APOL1 forms pH-gated cation-selective channels in planar lipid bilayers: Relevance to trypanosome lysis

Significance African trypanosomes are parasites that can cause African sleeping sickness in humans. Host defense against some of these is provided by the human serum factor apolipoprotein L-1 (APOL1), which causes swelling and lysis of susceptible trypanosomes. Lysis follows uptake of APOL1 into acidic parasite endosomes and is thought to involve ion influx across the plasma membrane. In this paper we show that, after interaction of APOL1 with lipid bilayers at acidic pH, subsequent pH neutralization triggers the opening of pH-gated channels that selectively conduct cations across the bilayer. Based on these results, we propose a mechanism of trypanosome lysis that involves endocytic recycling of APOL1 and the opening of APOL1-induced cation-selective channels, at neutral pH, in the parasite plasma membrane. Apolipoprotein L-1 (APOL1), the trypanolytic factor of human serum, can lyse several African trypanosome species including Trypanosoma brucei brucei, but not the human-infective pathogens T. brucei rhodesiense and T. brucei gambiense, which are resistant to lysis by human serum. Lysis follows the uptake of APOL1 into acidic endosomes and is apparently caused by colloid-osmotic swelling due to an increased ion permeability of the plasma membrane. Here we demonstrate that nanogram quantities of full-length recombinant APOL1 induce ideally cation-selective macroscopic conductances in planar lipid bilayers. The conductances were highly sensitive to pH: their induction required acidic pH (pH 5.3), but their magnitude could be increased 3,000-fold upon alkalinization of the milieu (pKa = 7.1). We show that this phenomenon can be attributed to the association of APOL1 with the bilayer at acidic pH, followed by the opening of APOL1-induced cation-selective channels upon pH neutralization. Furthermore, the conductance increase at neutral pH (but not membrane association at acidic pH) was prevented by the interaction of APOL1 with the serum resistance-associated protein, which is produced by T. brucei rhodesiense and prevents trypanosome lysis by APOL1. These data are consistent with a model of lysis that involves endocytic recycling of APOL1 and the formation of cation-selective channels, at neutral pH, in the parasite plasma membrane.
A Tutorial on Bayesian Optimization of Expensive Cost Functions, with Application to Active User Modeling and Hierarchical Reinforcement Learning

We present a tutorial on Bayesian optimization, a method of finding the maximum of expensive cost functions. Bayesian optimization employs the Bayesian technique of setting a prior over the objective function and combining it with evidence to get a posterior function. This permits a utility-based selection of the next observation to make on the objective function, which must take into account both exploration (sampling from areas of high uncertainty) and exploitation (sampling areas likely to offer improvement over the current best observation). We also present two detailed extensions of Bayesian optimization, with experiments---active user modelling with preferences, and hierarchical reinforcement learning---and a discussion of the pros and cons of Bayesian optimization based on our experiences.
Exercise-Induced Bronchospasm and Atopy in Ghana: Two Surveys Ten Years Apart

Background Asthma and allergic diseases have increased in the developed countries. It is important to determine whether the same trends are occurring in the developing countries in Africa. We aimed to determine the time trend in the prevalence of exercise-induced bronchospasm (EIB) and atopic sensitisation over a ten-year period in Ghanaian schoolchildren. Methods and Findings Two surveys conducted using the same methodology ten years apart (1993 and 2003) among schoolchildren aged 9–16 years attending urban rich (UR), urban poor (UP), and rural (R) schools. Exercise provocation consisted of free running for six minutes. Children were skin tested to mite, cat, and dog allergen. 1,095 children were exercised in 1993 and 1,848 in 2003; 916 were skin tested in 1993 and 1,861 in 2003. The prevalence of EIB increased from 3.1% (95% CI 2.2%–4.3%) to 5.2% (4.3%–6.3%); absolute percentage increase 2.1% (95% CI 0.6%–3.5%, p < 0.01); among UR, UP, and R children EIB had approximately doubled from 4.2%, 1.4%, and 2.2% to 8.3%, 3.0% and 3.9% respectively. The prevalence of sensitisation had also doubled from 10.6%, 4.7%, and 4.4% to 20.2%, 10.3%, and 9.9% (UR, UP, and R respectively). Mite sensitisation remained unchanged (5.6% versus 6.4%), but sensitisation to cat and dog increased considerably from 0.7% and 0.3% to 4.6% and 3.1%, respectively. In the multiple logistic regression analysis, sensitisation (odds ratio [OR] 1.77, 95% CI 1.12–2.81), age (OR 0.88, 95% CI 0.79–0.98), school (the risk being was significantly lower in UP and R schools: OR 0.40, 95% CI 0.23–0.68 and OR 0.54, 95% CI 0.34–0.86, respectively) and year of the study (OR 1.73, 95% CI 1.13–2.66) remained significant and independent associates of EIB. Conclusions The prevalence of both EIB and sensitisation has approximately doubled over the ten-year period amongst 9- to 16-year-old Ghanaian children irrespective of location, with both EIB and atopy being more common among the UR than the UP and R children.
Hemodynamically independent analysis of cerebrospinal fluid and brain motion observed with dynamic phase contrast MRI

Brain and cerebrospinal fluid (CSF) movements are influenced by the anatomy and mechanical properties of intracranial tissues, as well as by the waveforms of driving vascular pulsations. The authors analyze these movements so that the purely hemodynamic factors are removed and the underlying mechanical couplings between brain, CSF, and the vasculature are characterized in global fashion. These measurements were used to calculate a set of impulse response functions or modulation transfer functions, characterizing global aspects of the vasculature's mechanical coupling to the intracranial tissues, the cervical CSF, and the cervical spinal cord. These functions showed that a sudden influx of blood into the head was rapidly accommodated by some type of intracranial reserve or capacity. After this initial response, an equal volume of CSF was driven through the foramen magnum over the next 200‐300 ms as the intracranial reserve relaxed to its base‐line state.
Angiomatous Meningioma: CT and MR Imaging Features

hancement, intratumoral cystic change, and peritumoral edema. Results: Most tumors showed high signal intensity on T2-weighted images, and low signal intensity on diffusion-weighted images. After intravenous contrast administration, the tumor showed heterogeneous strong enhancement. Most tumors had a lobulated margin with prominent intratumoral signal voids. Four patients showed marked or small intratumoral cystic changes. Conclusion: Typically, angiomatous meningiomas were dura-based masses characterized by lobulated margins with high signal intensity on T2-weighted imaging (T2WI), low signal intensity on diffusion-weighted imaging (DWI), prominent intratumoral signal voids, intratumoral cystic changes, and marked enhancement after intravenous contrast administration.
Haemophilus influenzae biotype VII

A hitherto unreported biotype of Haemophilus influenzae is described. The isolate is noncapsulate and fails to decarboxylate ornithine or hydrolyze urea but is a strong indole producer. Its frequency is low. It is suggested that this newly recognized biotype of H. influenzae be designated biotype VII.
Correction: Elp3 drives Wnt-dependent tumor initiation and regeneration in the intestine

Correction: Elp3 drives Wnt-dependent tumor initiation and regeneration in the intestine Aurélie Ladang, Francesca Rapino, Lukas C. Heukamp, Lars Tharun, Kateryna Shostak, Damien Hermand, Sylvain Delaunay, Iva Klevernic, Zheshen Jiang, Nicolas Jacques, Diane Jamart, Valérie Migeot, Alexandra Florin, Serkan Göktuna, Brigitte Malgrange, Owen J. Sansom, Laurent Nguyen, Reinhard Büttner, Pierre Close, and Alain Chariot Vol. 212, No. 12, November 16, 2015. Pages 2057–2075.
Luminescence spectroscopy of CdTe/CdS based photovoltaic devices and associated materials

This thesis contains primarily a study of CdTe/CdS heterojunction solar cells^ chiefly using photoluminescence spectroscopy. These solar cells show a good potential for commercial power generation in the near Aiture and are of interest to several major companies. A vital but little understood step in the manufacturing process is: annealing the cells in the presence of chlorine prior to back contact application. Studies are performed on a selection of thin film CdTe/CdS cells subjected to CdCl(_2) anneals of different duration. A chemical bevel etch was used to study the spectra at different depths into the sample and laser intensity arid sarhple temperature variations to identify the mechanisms behind the observed photoluminescence peaks. Evidence was found for the CdCl(_2) anneal promoting sulphur diffusion and subsequent grain boundary passivation in the CdTe, leading to increased minority carrier lifetimes and device efficiencies Attempts to obtain electroluminescence from the CdTe/CdS solar cells were madei By using current pulses electroluminescence was obtained in the 780-850nm range with discernible spectral features. Photoluminescence (PL) studies were also performed on a single crystal of CdTe grown to an unprecedented size of approx. 5 cm diameter at Durham university by a multi-tube seeded vapour method of crystal growth. Much higher resolution spectra were: obtained for this than for the solar cells. Several peaks were identified arid the mechanisms responsible were theorised. By taking slices of the crystal boule the PL spectra at different points-throughout the bulk of the crystal were determined. A series of high quality ion-implanted CdTe crystals were also studied! by intensity and temperature dependent PL in order to obtain a better understanding of the effects of known concentrations of known impurities on the PL spectra of CdTe. Specific PL features associated with certain dopants were observed.
Effects of water pulsing on individual performance and competitive hierarchies in plants

In a glass house experiment, we investigated the effect of both the frequency of water pulses and the total amount of water supplied on individual performance in the absence and presence of neighbors. We used monocultures and all combinations of pairs of seedlings of three species of perennial grasses, characteristic of different points along a soil moisture gradient within a semi-arid grassland in New Mexico, USA. In the absence of neighbors, higher total water or more frequent (but smaller) pulses significantly increased growth of all three species. The species with the fastest intrinsic growth rate, and from the most productive habitat, exhibited the largest increase in absolute and relative growth in response to higher total water quantity. Competitive effects were highly significant overall and there were significant hierarchies of competitive ability. Un- der frequent pulses, the fast-growing species from the most productive environment was the best competitor in terms of both ability to suppress other plants and ability to tolerate the presence of neighbors. However, under infrequent pulses, the slowest growing species from the least productive environ- ment became a much stronger competitor, again in terms of both suppression and tolerance of neighbors. While differences in total water availability had greater effects than differences in pulsing regime on individual plant performance in the absence of competition, pulsing regime had much stronger effects on relative competitive abilities and thus may be more likely to influence field distribution patterns.
Posterior Wnts Have Distinct Roles in Specification and Patterning of the Planarian Posterior Region

The wnt signaling pathway is an intercellular communication mechanism essential in cell-fate specification, tissue patterning and regional-identity specification. A βcatenin-dependent signal specifies the AP (Anteroposterior) axis of planarians, both during regeneration of new tissues and during normal homeostasis. Accordingly, four wnts (posterior wnts) are expressed in a nested manner in central and posterior regions of planarians. We have analyzed the specific role of each posterior wnt and the possible cooperation between them in specifying and patterning planarian central and posterior regions. We show that each posterior wnt exerts a distinct role during re-specification and maintenance of the central and posterior planarian regions, and that the integration of the different wnt signals (βcatenin dependent and independent) underlies the patterning of the AP axis from the central region to the tip of the tail. Based on these findings and data from the literature, we propose a model for patterning the planarian AP axis.
Expression of fos family and jun family proto-oncogenes during corneal epithelial wound healing.

PURPOSE While transformation of epithelial cells to a motile form is the first step in wound healing of the corneal epithelium, the migratory mechanism in these cells is not fully understood. We studied the expression of proto-oncogene mRNAs: c-fos; c-jun; fos B; jun B; jun D in injured corneal epithelium using in situ hybridization. Moreover, we examined immunolocalization of c-Fos and c-Jun protein products to elucidate the transcriptional activation prior to the onset of migration in corneal epithelium. METHODS An epithelial defect was made on one cornea of 60 Wistar rats. The affected eye was enucleated immediately (within 5 min) or was allowed to heal for 15, 30, 60, 90, 120 and 180 min. Frozen sections were processed for in situ hybridization with c-fos, c-jun, fos B, jun B and jun D mRNAs or were stained with anti-c-fos and anti-c-jun antibodies. RESULTS Fifteen min after the epithelial ablation, weak signals for c-fos and c-jun mRNAs were detected in the corneal epithelium surrounding the wound. These signals reached a peak 30 to 60 min after ablation, but were no longer evident at 120 min. Immunoreactivities for these proteins were also detected in the same area at 60 to 120 min after the epithelial ablation. Fos B mRNA was detected in the same region at 30 min after the ablation, and reached its peak after 30 to 60 min, but was no longer evident at 120 min. Jun B mRNA was detected in the epithelium around the defect 60 min after the ablation, later than the other proto-oncogenes, and reached its peak after 90 min. The message for jun D was detected in normal epithelium, and was not affected by wounding. CONCLUSIONS These findings indicate that transcriptional activation of epithelial cells is initiated in the early phase after epithelial ablation, before the cells start to migrate, and that these proto-oncogene products may play important roles in wound healing in corneal epithelium. The time lag of the peak of expression of these proto-oncogenes in this process.