Miracle-dz/UniFAR-FTUs huggingface dataset:
Analyzing Social Experiments as Implemented: A Reexamination of the Evidence from the Highscope Perry Preschool Program

Social experiments are powerful sources of information about the effectiveness of interventions. In practice, initial randomization plans are almost always compromised. Multiple hypotheses are frequently tested. "Significant" effects are often reported with p-values that do not account for preliminary screening from a large candidate pool of possible effects. This paper develops tools for analyzing data from experiments as they are actually implemented.We apply these tools to analyze the influential HighScope Perry Preschool Program. The Perry program was a social experiment that provided preschool education and home visits to disadvantaged children during their preschool years. It was evaluated by the method of random assignment. Both treatments and controls have been followed from age 3 through age 40.Previous analyses of the Perry data assume that the planned randomization protocol was implemented. In fact, as in many social experiments, the intended randomization protocol was compromised. Accounting for compromised randomization, multiple-hypothesis testing, and small sample sizes, we find statistically significant and economically important program effects for both males and females. We also examine the representativeness of the Perry study.
Suicide prevention: A study of patients' views

Background Suicide prevention strategies are usually formulated without seeking the views of people with psychiatric illnesses. Aims To establish what helped patients with severe psychiatric illness when they felt suicidal. Method A semi-structured interview was constructed following transcribed interviews with 12 patients. This was administered to 59 out-patients with serious and enduring mental illness, focusing on factors they found helpful or unhelpful when at their most despairing. Results Three-quarters of patients were in contact with psychiatric services when feeling at their lowest, and this contact was generally deemed to be helpful. Social networks were considered just as helpful as psychiatric services by the half of patients who discussed their feelings with friends or relatives. Religious beliefs and affiliations were helpful. Negative influences included the media and the stigma of psychiatric illness. Conclusions Efforts at suicide prevention might usefully focus on enhancing patients' social networks, increasing the likelihood of early contact with psychiatric services and decreasing the stigma attached to psychiatric illness. Larger studies of patients exposed to different service models would be informative.
A Flow Cytometry Method for Rapid Detection and Enumeration of Total Bacteria in Milk

ABSTRACT Application of flow cytometry (FCM) to microbial analysis of milk is hampered by the presence of milk proteins and lipid particles. Here we report on the development of a rapid (≤1-h) FCM assay based on enzymatic clearing of milk to determine total bacteria in milk. When bacteria were added to ultra-heat-treated milk, a good correlation (r ≥ 0.98) between the FCM assay and the more conventional methods of plating and direct microscopic counting was achieved. Raw milk data showed a significant correlation (P < 0.01) and a good agreement (r = 0.91) between FCM and standard plate count methods. The detection limit of the FCM assay was ≤104 bacteria ml of milk−1. This limit is below the level of detection required to satisfy legislation in many countries and states.
Disruption of the Smad7 gene promotes renal fibrosis and inflammation in unilateral ureteral obstruction (UUO) in mice.

BACKGROUND The present study tested the hypothesis that disruption of Smad7 function may accelerate renal fibrosis and inflammation. METHODS This was investigated in a unilateral ureteral obstruction (UUO) model induced in wild-type (WT) and Smad7DeltaE1 mice in which functional Smad7 is disrupted by deleting exon I in the Smad7 gene. Renal fibrosis and inflammation after UUO were examined by histology, real-time PCR, western blot analyses and immunohistochemistry. RESULTS Seven days after UUO, severe tubulointerstitial fibrosis developed in WT mice as evidenced by a marked increase in alpha-SMA, collagen I and III extracellular matrix. This was associated with a significant upregulation of renal TGF-beta1 and CTGF and activation of Smad2/3. Interestingly, compared to WT UUO mice, Smad7DeltaE1 mice with UUO exhibited a further increase in TGF-beta/Smad2/3-dependent renal fibrosis. Moreover, compared to WT UUO mice, deletion of the Smad7 gene also sustained NF-kappaB activation and thus enhanced further renal inflammation such as macrophage infiltration and upregulation of TNF-alpha, MCP-1, OPN and ICAM-1. CONCLUSION Smad7 is a critical negative regulator of TGF-beta/Smad2/3 and NF-kappaB signalling and plays a negative regulating role in both renal fibrosis and inflammation after UUO. Results from this study further support the notion that Smad7 may be a therapeutic agent for kidney diseases.
Institutions and the Relation between Corruption and Economic Growth

We study the effects of bureaucratic corruption on economic growth in a framework that takes into account that corruption also affects growth through its impact on institutions. We use a formal growth framework in which corruption affects growth negatively because of individual rent-seeking and stealing of public goods, but where corruption may serve a positive role by taking over the role of institutions. We find that the overall effect of corruption on economic growth is highly dependent on the institutional setting of a country. Particularly in situations where institutions are not well developed corruption may be conducive to economic growth. We also find that the interaction among institutions themselves matters. This underscores the importance of taking into account the complete institutional setting when studying corruption, both in theory as well as empirically.
Haemodynamic responses to NG‐monomethyl‐l‐arginine in spontaneously hypertensive and normotensive Wistar‐Kyoto rats

1 Nitric oxide (NO) is a major component of endothelium‐derived relaxing factor (EDRF) the synthesis of which from l‐arginine can be inhibited by NG‐monomethyl‐l‐arginine (l‐NMMA). To assess whether basal NO tone is different in experimental hypertension, the haemodynamic effects of l‐NMMA have been compared in anaesthetized spontaneously hypertensive (SH) and normotensive Wistar‐Kyoto (WKY) rats in which autonomic reflexes were blocked by ganglion blockade. 2 Bolus intravenous injections of l‐NMMA, 1–30 mg kg−1, but not d‐NMMA, 1–30 mg kg−1, induced dose‐related increases in mean arterial pressure and decreases in conductances in the renal, carotid, hindquarters and mesenteric vascular beds in both SH and WKY rats. Although the different vascular beds varied in their maximum responses to l‐NMMA, there were neither qualitative nor quantitative differences between the two rat strains in this respect. 3 The effects of l‐NMMA, 30 mg kg−1, i.v. on all parameters were rapidly and completely reversed by l‐arginine, 30 mg kg−1, i.v. , in both SH and WKY rats. 4 The results indicate that NO derived from l‐arginine exerts a powerful vasodilator tone in both anaesthetized, ganglion‐blocked SH and WKY rats. Although NO appears to contribute differentially to tone in the different vascular beds, there were no major differences between the two rat strains in this respect. Hence a reduced NO tone to the vasculature is unlikely to be a major factor contributing to the elevated blood pressure in the adult SH rat.
STUDIES ON 5-HYDROXYTRYPTAMINE STORES IN PINEAL GLAND OF RAT.

Summary— The pineal gland of the rat has been studied using a highly specific and sensitive fluorescence microscopical method for the cellular localization of certain biogenic monoamines, in combination with fluorimetric determinations of 5-hydroxytryptamine (5-HT) levels under normal and experimental conditions. Exceptionally large amounts of 5-HT have been found in the gland. This amine is located partly in the parenchymal cells and partly in the pineal sympathetic nerves. There is strong evidence to support the view that the sympathetic nerves are noradrenergic, but take up 5-HT from the parenchymal cells into their terminal portions, which run within the gland. A unique feature thus exists in the sympathetic nerves of the rat's pineal in that they contain two different monoamines. The experiments have shown that half of the pineal 5-HT is located in the sympathetic nerves, and that the rest is stored in the parenchyma. A small portion of this parenchymal pool is dependent on an intact innervation and is lost on denervation. After the injection of noradrenaline, the fluorescence of the pineal nerves changes to show the characteristics of a catecholamine. Half of the pineal 5-HT is then depleted, showing that the neuronal 5-HT is replaced by the administered noradrenaline. No change can be registered in pineal 5-HT levels 22 hours after the administration of α-methyl-m-tyrosine. However, metaraminol causes a pronounced depletion of pineal 5-HT. A reaccumulation of the 5-HT fluorescence in the pineal nerves can be brought about by the injection of nialamide to reserpinized animals, as it occurs in the cerebral nerves containing 5-HT.
Committee Opinion No. 644: The Apgar Score

ABSTRACT The Apgar score provides an accepted and convenient method for reporting the status of the newborn infant immediately after birth and the response to resuscitation if needed. The Apgar score alone cannot be considered to be evidence of or a consequence of asphyxia, does not predict individual neonatal mortality or neurologic outcome, and should not be used for that purpose. An Apgar score assigned during a resuscitation is not equivalent to a score assigned to a spontaneously breathing infant. The American Academy of Pediatrics and the American College of Obstetricians and Gynecologists encourage use of an expanded Apgar score reporting form that accounts for concurrent resuscitative interventions.
Effects of growth hormone on steroid-induced increase in ability of urea synthesis and urea enzyme mRNA levels.

Growth hormone (GH) reduces the catabolic side effects of steroid treatment due to its effects on tissue protein synthesis/degradation. Little attention is focused on hepatic amino acid degradation and urea synthesis. Five groups of rats were given 1) placebo, 2) prednisolone, 3) placebo, pair fed to the steroid group, 4) GH, and 5) prednisolone and GH. After 7 days, the in vivo capacity of urea N synthesis (CUNS) was determined by saturating alanine infusion, in parallel with measurements of liver mRNA levels of urea cycle enzymes, N contents of organs, N balance, and hormones. Prednisolone increased CUNS (micromol . min-1 . 100 g-1, mean +/- SE) from 9.1 +/- 1.0 (pair-fed controls) to 13.2 +/- 0.8 (P < 0.05), decreased basal blood alpha-amino N concentration from 4.2 +/- 0.5 to 3.1 +/- 0.3 mmol/l (P < 0.05), increased mRNA levels of the rate- and flux-limiting urea cycle enzymes by 20 and 65%, respectively (P < 0. 05), and decreased muscle N contents and N balance. In contrast, GH decreased CUNS from 6.1 +/- 0.9 (free-fed controls) to 4.2 +/- 0.5 (P < 0.05), decreased basal blood alpha-amino N concentration from 3. 8 +/- 0.3 to 3.2 +/- 0.2, decreased mRNA levels of the rate- and flux-limiting urea cycle enzymes to 60 and 40%, respectively (P < 0. 05), and increased organ N contents and N balance. Coadministration of GH abolished all steroid effects. We found that prednisolone increases the ability of amino N conversion into urea N and urea cycle gene expression. GH had the opposite effects and counteracted the N-wasting side effects of prednisolone.
Molecular basis for allosteric specificity regulation in class Ia ribonucleotide reductase from Escherichia coli

Ribonucleotide reductase (RNR) converts ribonucleotides to deoxyribonucleotides, a reaction that is essential for DNA biosynthesis and repair. This enzyme is responsible for reducing all four ribonucleotide substrates, with specificity regulated by the binding of an effector to a distal allosteric site. In all characterized RNRs, the binding of effector dATP alters the active site to select for pyrimidines over purines, whereas effectors dGTP and TTP select for substrates ADP and GDP, respectively. Here, we have determined structures of Escherichia coli class Ia RNR with all four substrate/specificity effector-pairs bound (CDP/dATP, UDP/dATP, ADP/dGTP, GDP/TTP) that reveal the conformational rearrangements responsible for this remarkable allostery. These structures delineate how RNR ‘reads’ the base of each effector and communicates substrate preference to the active site by forming differential hydrogen bonds, thereby maintaining the proper balance of deoxynucleotides in the cell. DOI: http://dx.doi. org/10.7554/eLife.07141. 001
Inhibition of endothelial cell movement by pericytes and smooth muscle cells: activation of a latent transforming growth factor-beta 1-like molecule by plasmin during co-culture

When a confluent monolayer of bovine aortic endothelial (BAE) cells is wounded with a razor blade, endothelial cells (ECs) spontaneously move into the denuded area. If bovine pericytes or smooth muscle cells (SMCs) are plated into the denuded area at low density, they block the movement of the ECs. This effect is dependent upon the number of cells plated into the wound area and contact between ECs and the plated cells. Antibodies to transforming growth factor-beta 1 (TGF-beta 1) abrogate the inhibition of BAE cell movement by pericytes or SMCs. TGF- beta 1, if added to wounded BAE cell monolayers, also inhibits cell movement. When cultured separately, BAE cells, pericytes, and SMCs each produce an inactive TGF-beta 1-like molecule which is activated in BAE cell-pericyte or BAE cell-SMC co-cultures. The activation appears to be mediated by plasmin as the inhibitory effect on cell movement in co- cultures of BAE cells and pericytes is blocked by the inclusion of inhibitors of plasmin in the culture medium.
Risk factors for medication errors in the electronic and manual prescription 1

ABSTRACT Objective: to compare electronic and manual prescriptions of a public hospital of Brasilia, identifying risk factors for the occurrence of medication errors. Method: descriptive-exploratory, comparative and retrospective study. Data collection occurred from July 2012 to January 2013, using an instrument for the review of the information contained in medical records related to the medication process. A total of 190 manual and 199 electronic records composed the sample, with 2027 prescriptions each. Results: compared to the manual prescription, a significant reduction was observed in the risk factors after implantation of the electronic prescription, in items such as "lack of the form of dilution" (71.1% to 22.3%) and "prescription with brand name" (99.5% to 31.5%). Conversely, the risk factors "no check" and "lack of CRM of the prescriber" increased. The lack of the allergy registration and the occurrences related to medication were the same for both groups. Conclusion: generally, the use of the electronic prescription system was associated with a significant reduction in risk factors for medication errors, concerning the following aspects: illegibility, prescription with brand name and presence of essential items that provide a safe and effective prescription.
Risk factors for recurrent acute alcohol-associated pancreatitis: A prospective analysis

Objective. In an earlier retrospective study we showed that 46% of patients with acute alcoholic pancreatitis had recurrent attacks within 10–20 years, about 30% having a recurrence during the first 3 years. The aim of this prospective follow-up study was to determine the risk factors associated with recurrences. Material and methods. Sixty-eight patients, (59 M, 9 F, mean age 46 years, range 25–71 years) who survived their first acute alcohol-induced pancreatitis from January 2001 to January 2004 volunteered to participate in the study. The diagnostic criteria for acute pancreatitis were epigastric pain, serum amylase >3 times the upper normal range, elevated serum C-reactive protein (CRP), and signs of acute pancreatitis in imaging. Other etiologies were excluded. Alcohol consumption and dependency were detected by the Alcohol Use Disorders Identification Test (AUDIT) and the Short Alcohol Dependence Data (SADD), respectively, and by attempting to evaluate recent use in grams of pure alcohol. Social and demographic data of the patients, smoking, body mass index, and the severity of the pancreatitis were recorded. Serum and fecal markers of the endocrine and exocrine function and secretin-stimulated MRCP were studied. The patients were followed for a median 38 (25–61) months for recurrences, and at the 2-year time-point had a follow-up visit to investigate any changes in alcohol consumption. Results. Seventeen (25%) patients had recurrences of acute alcoholic pancreatitis during the follow-up. Pre-illness alcohol consumption, the severity of the pancreatitis, patient's social or demographic data, pancreatic function tests or morphologic changes in MRCP, or smoking did not correlate with recurrence. None of the 13 patients with consistent total abstinence from alcohol at 2 years developed recurrent pancreatitis compared with 17 out of 51 (33%) patients with at least some alcohol consumption (p=0.02). Use of other sedatives than alcohol before the first attack of pancreatitis was an independent risk factor associated with recurrence (HR = 6.95, 95% CI 2.45–19.72, p<0.001). A lower reduction in dependency on alcohol (less decreased SADD points) during 2 years was associated with a higher recurrence rate (HR = 0.921/each reduced point, 95% CI 0.872–0.974, p=0.004). Conclusions. Contrary to chronic pancreatitis, smoking was not found to be a risk factor for recurrent episodes after the first attack of acute alcoholic pancreatitis. Abstinence from alcohol protects against recurrent pancreatitis. Patients who developed recurrent acute pancreatitis had increased dependency on alcohol, demonstrated by the use of other sedatives in addition to alcohol and supported by the less decreased dependency during the follow-up.
Changes in Transcriptional Profiles Are Associated with Early Fruit Tissue Specialization in Tomato1[w]

The cell expansion phase contributes in determining the major characteristics of a fleshy fruit and represents two-thirds of the total fruit development in tomato (Solanum lycopersicum). So far, it has received very little attention. To evaluate the interest of a genomic scale approach, we performed an initial sequencing of approximately 1,200 cell expansion stage-related sequence tags from tomato fruit at 8, 12, and 15 d post anthesis. Interestingly, up to approximately 35% of the expressed sequence tags showed no homology with available tomato expressed sequence tags and up to approximately 21% with any known gene. Microarrays spotted with expansion phase-related cDNAs and other fruit cDNAs involved in various developmental processes were used (1) to profile gene expression in developing fruit and other plant organs and (2) to compare two growing fruit tissues engaged mostly in cell division (exocarp) or in cell expansion (locular tissue surrounding the seeds). Reverse transcription-polymerase chain reaction analysis was further used to confirm microarray results and to specify expression profiles of selected genes (24) in various tissues from expanding fruit. The wide range of genes expressed in the exocarp is consistent with a protective function and with a high metabolic activity of this tissue. In addition, our data show that the expansion of locular cells is concomitant with the expression of genes controlling water flow, organic acid synthesis, sugar storage, and photosynthesis and suggest that hormones (auxin and gibberellin) regulate this process. The data presented provide a basis for tissue-specific analyses of gene function in growing tomato fruit.
Discretizing LTI Descriptor (Regular) Differential Input Systems with Consistent Initial Conditions

A technique for discretizing efficiently the solution of a Linear descriptor (regular) differential input system with consistent initial conditions, and Time-Invariant coefficients (LTI) is introduced and fully discussed. Additionally, an upper bound for the error that derives from the procedure of discretization is also provided. Practically speaking, we are interested in such kind of systems, since they are inherent in many physical, economical and engineering phenomena.
Dynamical Chirally Improved Quarks: First Results for Hadron Masses

We present first results for a study with two mass-degenerate dynamical Chirally Improved (CI) fermions on lattices of spatial extent 2.4 fm. The CI Dirac operator obeys the Ginsparg-Wilson condition in good approximation. The pion mass we use is still large O(470 MeV) for the 16**3*32 lattices with lattice spacing of 0.15 fm. The hadron masses are obtained with the variational technique and the results compared with earlier quenched calculations with similar lattice parameters. We find indications for the isovector, scalar meson a0(980) near the experimental value, in contradistinction to quenched results which always produced a mass value compatible with the first excitation a0(1450).
A PDTB-styled end-to-end discourse parser

Abstract Since the release of the large discourse-level annotation of the Penn Discourse Treebank (PDTB), research work has been carried out on certain subtasks of this annotation, such as disambiguating discourse connectives and classifying Explicit or Implicit relations. We see a need to construct a full parser on top of these subtasks and propose a way to evaluate the parser. In this work, we have designed and developed an end-to-end discourse parser-to-parse free texts in the PDTB style in a fully data-driven approach. The parser consists of multiple components joined in a sequential pipeline architecture, which includes a connective classifier, argument labeler, explicit classifier, non-explicit classifier, and attribution span labeler. Our trained parser first identifies all discourse and non-discourse relations, locates and labels their arguments, and then classifies the sense of the relation between each pair of arguments. For the identified relations, the parser also determines the attribution spans, if any, associated with them. We introduce novel approaches to locate and label arguments, and to identify attribution spans. We also significantly improve on the current state-of-the-art connective classifier. We propose and present a comprehensive evaluation from both component-wise and error-cascading perspectives, in which we illustrate how each component performs in isolation, as well as how the pipeline performs with errors propagated forward. The parser gives an overall system F1 score of 46.80 percent for partial matching utilizing gold standard parses, and 38.18 percent with full automation.