Miracle-dz/UniFAR-FTUs huggingface dataset:
Bone Tunnel Diameter Measured with CT after Anterior Cruciate Ligament Reconstruction Using Double-Bundle Auto-Hamstring Tendons: Clinical Implications

Objective To evaluate the correlation between bone tunnel diameter after anterior cruciate ligament (ACL) reconstruction measured by computed tomography (CT) using multiplanar reconstruction (MPR) and stability or clinical scores. Materials and Methods Forty-seven patients (41 men and 6 women, mean age: 34 years) who had undergone ACL reconstruction with the double bundle technique using auto-hamstring graft and had subsequently received CT scans immediately after the surgery (T1: range, 1-4 days, mean, 2.5 days) and at a later time (T2: range, 297-644 days, mean, 410.4 days) were enrolled in this study. The diameter of each tunnel (two femoral and two tibial) at both T1 and T2 were independently measured using MPR technique by two radiologists. Stability and clinical scores were evaluated with a KT-2000 arthrometer, International Knee Documentation Committee objective scores, and the Lysholm score. Statistical analysis of the correlation between the diameter at T2 or the interval diameter change ratio ([T2 - T1] / T1) and clinical scores or stability was investigated. Results The tibial bone tunnels for the anteromedial bundles were significantly widened at T2 compared with T1 (observer 1, 0.578 mm to 0.698 mm, p value of < 0.001; observer 2, 0.581 mm to 0.707 mm, p value of < 0.001). There was no significant correlation between the diameter at T2 and stability or clinical scores and between the interval change ratio ([T2 - T1] / T1) and stability or clinical scores (corrected p values for all were 1.0). Intraobserver agreement for measurements was excellent (> 0.8) for both observers. Interobserver agreement for measurement was excellent (> 0.8) except for the most distal portion of the femoral bone tunnel for anterior medial bundle in immediate postoperative CT, which showed moderate agreement (concordance correlation coefficient = 0.6311). Conclusion Neither the diameter nor its change ratio during interval follow-up is correlated with stability or clinical scores.
Increased drug resistance of cultured human cancer cell lines in three‐dimensional cellular growth assay using collagen gel matrix

We have conducted a three‐dimensional cellular growth assay using collagen gel matrix with an endpoint of the 3‐(4,5‐dimethylthiazol‐2‐yl)‐2,5‐diphenyl‐2H tetrazolium bromide (MTT) assay, on four human gastric and colonic cancer cell lines. Three‐dimensionally growing cells in collagen gel matrix were 2‐ to 180‐fold more resistant to mitomycin C, doxorubicin, 5‐fluorouracil, and cisplatin than those in monolayer culture, and these resistances were increased further when the cells increased their three‐dimensionality. Furthermore, the influence of fibroblasts in the collagen gel matrix on the chemosensitivity of cancer cells was less than that in monolayer culture. Since this new assay using collagen gel matrix with an endpoint of the MTT assay was able to detect the increase of drug resistance of human cancer cell lines by three‐dimensional cellular growth using a simple and convenient procedure, it was considered to be more useful than conventional monolayer cultures for evaluating the chemosensitivity of cancer cells.
Winter Ecosystem Respiration and Sources of CO2 From the High Arctic Tundra of Svalbard: Response to a Deeper Snow Experiment

Currently, there is a lack of understanding on how the magnitude and sources of carbon (C) emissions from High Arctic tundra are impacted by changing snow cover duration and depth during winter. Here we investigated this issue in a graminoid tundra snow fence experiment on shale‐derived gelisols in Svalbard from the end of the growing season and throughout the winter. To characterize emissions, we measured ecosystem respiration (Reco) along with its radiocarbon (14C) content. We assessed the composition of soil organic matter (SOM) by measuring its bulk‐C and nitrogen (N), 14C content, and n‐alkane composition. Our findings reveal that greater snow depth increased soil temperatures and winter Reco (25 mg C m−2 d−1 under deeper snow compared to 13 mg C m−2 d−1 in ambient conditions). At the end of the growing season, Reco was dominated by plant respiration and microbial decomposition of C fixed within the past 60 years (Δ14C = 62 ± 8‰). During winter, emissions were significantly older (Δ14C = −64 ± 14‰), and likely sourced from microorganisms decomposing aged SOM formed during the Holocene mixed with biotic or abiotic mineralization of the carbonaceous, fossil parent material. Our findings imply that snow cover duration and depth is a key control on soil temperatures and thus the magnitude of Reco in winter. We also show that in shallow Arctic soils, mineralization of carbonaceous parent materials can contribute significant proportions of fossil C to Reco. Therefore, permafrost‐C inventories informing C emission projections must carefully distinguish between more vulnerable SOM from recently fixed biomass and more recalcitrant ancient sedimentary C sources.
Evaluation of a community pharmacy delivered oral contraception service

Introduction In the UK half of all pregnancies are unplanned and half of teenage pregnancies terminated. Southwark and Lambeth have the highest teenage conception rates in London. In 2009, many teenage pregnancies in Southwark led to terminations. A contraception service was established where qualified pharmacists supplied oral contraception (OC) using a patient group direction (PGD). This service evaluation aimed to assess this service delivered in five community pharmacies. Methods Monthly data were submitted by each pharmacy to the Primary Care Trust on consultations, pills supplied, initial or subsequent supply and client referral. For specified periods consultation time was collected and a clinical notes audit undertaken. Client satisfaction was determined using a structured questionnaire returned to the pharmacy. Mystery shoppers were employed to assess the service. Results A total of 741 consultations were undertaken by seven pharmacists at five community pharmacies (October 2009–June 2011) with many (45.5%) occurring following emergency contraception supply. The mean consultation time was 19 minutes . Combined OC was most commonly supplied with nearly half (46.1%) of initial supplies to first-time pill users. Most consultations (92.2%) were with women aged under 30 years, with 22.5% aged under 20. Most consultations were with black or black British clients. Of the 99 women who completed the satisfaction questionnaires, most clients were very satisfied or satisfied with the service and felt comfortable talking to the pharmacist about contraception. Conclusions Trained pharmacists were clinically competent and provided OC in community pharmacy according to a PGD. This service was accessed by the target population; young women using emergency hormonal contraception who had not previously used OC. Clients were largely very satisfied with the service.
Psychological and behavioural patterns of stigma among patients with type 2 diabetes: a cross-sectional study

Objectives The aim of this study was to test the psychological and behavioural patterns of stigma (self-esteem and social participation) and their relationship to self-stigma, patient activation for engaging in self-care and glycaemic control among patients with type 2 diabetes mellitus (T2DM). Design A cross-sectional study. Setting 2 tertiary-level hospitals and 2 secondary-level hospitals in Japan. Participants A consecutive sample of 209 outpatients with T2DM. Inclusion criteria were as follows: presence of T2DM, age 20–74 years, no diagnosis of dementia and/or psychosis, and no need for urgent medical procedures. Outcome measures Study measures included a self-administered questionnaire to assess the Rosenberg Self-Esteem Scale (SES), the 3 subscales of 36-question Short Form Health Survey (SF-36; Social Function, Role Physical, Role Emotional), Self-Stigma Scale and Patient Activation Measure (PAM-13). Glycated haemoglobin was obtained from same day blood work. In our previous qualitative study, we found that psychological and behavioural patterns of stigma varied according to patients' levels of illness-related self-esteem as well as attitudes towards social participation. For quantitative consistency, we used the SES scale to measure self-esteem and the SF-36 subscales to measure social participation. We then divided participants into 4 groups by exhibited psychological and behavioural patterns: group A (high SES/high SF-36), group B (high SES/low SF-36), group C (low SES/high SF-36) and group D (low SES/low SF-36). Results Using analysis of covariance after controlling for age and sex, there was a significant difference in self-stigma levels between the four groups (F[3,203]=15.70, p<0.001). We observed the highest mean self-stigma levels in group D. Group D also had significantly lower PAM-13 scores than those of groups A (p<0.001) and B (p=0.02). Conclusions The psychological and behavioural pattern of group D was found to be associated with higher levels of self-stigma and poorer patient activation for self-care.
Universal Artifacts Affect the Branching of Phylogenetic Trees, Not Universal Scaling Laws

Background The superficial resemblance of phylogenetic trees to other branching structures allows searching for macroevolutionary patterns. However, such trees are just statistical inferences of particular historical events. Recent meta-analyses report finding regularities in the branching pattern of phylogenetic trees. But is this supported by evidence, or are such regularities just methodological artifacts? If so, is there any signal in a phylogeny? Methodology In order to evaluate the impact of polytomies and imbalance on tree shape, the distribution of all binary and polytomic trees of up to 7 taxa was assessed in tree-shape space. The relationship between the proportion of outgroups and the amount of imbalance introduced with them was assessed applying four different tree-building methods to 100 combinations from a set of 10 ingroup and 9 outgroup species, and performing covariance analyses. The relevance of this analysis was explored taking 61 published phylogenies, based on nucleic acid sequences and involving various taxa, taxonomic levels, and tree-building methods. Principal Findings All methods of phylogenetic inference are quite sensitive to the artifacts introduced by outgroups. However, published phylogenies appear to be subject to a rather effective, albeit rather intuitive control against such artifacts. The data and methods used to build phylogenetic trees are varied, so any meta-analysis is subject to pitfalls due to their uneven intrinsic merits, which translate into artifacts in tree shape. The binary branching pattern is an imposition of methods, and seldom reflects true relationships in intraspecific analyses, yielding artifactual polytomies in short trees. Above the species level, the departure of real trees from simplistic random models is caused at least by two natural factors –uneven speciation and extinction rates; and artifacts such as choice of taxa included in the analysis, and imbalance introduced by outgroups and basal paraphyletic taxa. This artifactual imbalance accounts for tree shape convergence of large trees. Significance There is no evidence for any universal scaling in the tree of life. Instead, there is a need for improved methods of tree analysis that can be used to discriminate the noise due to outgroups from the phylogenetic signal within the taxon of interest, and to evaluate realistic models of evolution, correcting the retrospective perspective and explicitly recognizing extinction as a driving force. Artifacts are pervasive, and can only be overcome through understanding the structure and biological meaning of phylogenetic trees. Catalan Abstract in Translation S1.
Opinion Summarization for Hotel Reviews

This paper presents a new approach for finding the best ngrams that efficiently summarize a large set of reviews. The proposed unsupervised method uses a readability score and a representativeness score to select those n-grams that best convey the main opinions contained in the processed reviews. In order to further refine the selected n-grams, we use sentiment analysis and part of speech (POS) tagging to impose certain requirements that the n-grams that we are looking for should meet. Furthermore, the best n-grams were classified into several topics, which allowed a better prevention of redundancy among the summarizing n-grams. Therefore we offer an unsupervised, mostly non-aspect based, unstructured opinion summarization algorithm that can be easily implemented for any web platform that accepts reviews, due to its genericity. In order to assess the results of our algorithm, we summarized hotel reviews extracted for the TripAdvisor 1 website. The algorithm produces readable results that convey relevant opinions about the hotels that we used for testing.
DNA Damage and Cellular Stress Responses The Atr Protein Kinase Controls UV-Dependent Upregulation of p 16 INK 4 A Through Inhibition of Skp 2-Related Polyubiquitination / Degradation

The tumor suppressor p16, a phosphoprotein that exists in human cells under both phosphorylated and nonphosphorylated forms, plays crucial roles during the cellular response to UV light. However, it is still unclear how this protein is activated in response to this carcinogenic agent. We have shown here that UVC upregulates p16 and the phosphorylated form of the protein at the 4 serine sites; Ser-7, Ser-8, Ser-140, and Ser-152. This accumulation of p16 occurred through increasing the stability of both forms of the protein. Importantly, phospho-p16 showed much higher stability, and UV treatment strongly increased its level in absence of de novo protein synthesis. Furthermore, we have shown that the UV-dependent upregulation of both forms of p16 is under the control of the protein kinase Atr, which suppresses their UVC-dependent proteasomal degradation. Interestingly, although this degradation is ubiquitin-related for p16 through the Skp2 ubiquitin ligase protein, it is ubiquitin-independent for the phosphorylated form. In addition, we present clear evidence that Skp2 is upregulated in ATR-deficient cells, leading to the downregulation of the p27 protein in response to UVC light. Moreover, we have shown a preferential association of endogeneous phospho-p16 with Cdk4. This association increased following UV-treatment mainly for p16 phosphorylated at Ser-140 and Ser-152. Besides, we have shown that Atr regulates UV-related p16/Cdk4dependent and -independent phosphorylation of pRB and G1 cell cycle delay. Together, these results indicate that p16 and p27 are key targets in the Atr-dependent signaling pathway in response to UV damage. Mol Cancer Res; 9(3); 311–9. 2011 AACR.
Sleepiness, Long Distance Commuting and Night Work as Predictors of Driving Performance

Few studies have examined the effect of working night shift and long distance commuting. We examined the association between several sleep related and demographic variables, commuting distance, night work and use of mobile phones on driving performance. We used a prospective design to recruit participants and conducted a telephone survey (n = 649). The survey collected demographic and journey details, work and sleep history and driving performance concerning the day the participant was recruited. Participants also completed the Karolinska Sleepiness Scale and the Epworth Sleepiness Scale. Night workers reported significantly more sleepiness, shorter sleep duration and commuting longer distances. Seven variables were significant predictors of lane crossing. The strongest predictor was acute sleepiness (OR = 5.25, CI, 1.42–19.49, p<0.01) followed by driving ≥150 kms (OR = 3.61, CI, 1.66–7.81, p<0.001), obtaining less than 10 hours sleep in the previous 48 hours (OR = 2.58, CI, 1.03–6.46, p<0.05), driving after night shift (OR = 2.19, CI, 1.24–3.88, p<0.001), being <43 years old (OR = 1.95, CI, 1.11–3.41, p<0.05) and using mobile phones during the journey (OR = 1.90, CI, 1.10–3.27, p<0.05). Sleep related variables, long-distance commuting and night work have a major impact on lane crossing. Several interventions should be considered to reduce the level of sleepiness in night workers.
Application of Covariate Shift Adaptation Techniques in Brain–Computer Interfaces

A phenomenon often found in session-to-session transfers of brain-computer interfaces (BCIs) is nonstationarity. It can be caused by fatigue and changing attention level of the user, differing electrode placements, varying impedances, among other reasons. Covariate shift adaptation is an effective method that can adapt to the testing sessions without the need for labeling the testing session data. The method was applied on a BCI Competition III dataset. Results showed that covariate shift adaptation compares favorably with methods used in the BCI competition in coping with nonstationarities. Specifically, bagging combined with covariate shift helped to increase stability, when applied to the competition dataset. An online experiment also proved the effectiveness of bagged-covariate shift method. Thus, it can be summarized that covariate shift adaptation is helpful to realize adaptive BCI systems.
Hospital-based medication reconciliation practices: a systematic review.

BACKGROUND Medication discrepancies at care transitions are common and lead to patient harm. Medication reconciliation is a strategy to reduce this risk. OBJECTIVES To summarize available evidence on medication reconciliation interventions in the hospital setting and to identify the most effective practices. DATA SOURCES MEDLINE (1966 through February 2012) and a manual search of article bibliographies. STUDY SELECTION Twenty-six controlled studies. DATA EXTRACTION Data were extracted on study design, setting, participants, inclusion/exclusion criteria, intervention components, timing, comparison group, outcome measures, and results. DATA SYNTHESIS Studies were grouped by type of medication reconciliation intervention-pharmacist related, information technology (IT), or other-and were assigned quality ratings using US Preventive Services Task Force criteria. RESULTS Fifteen of 26 studies reported pharmacist-related interventions, 6 evaluated IT interventions, and 5 studied other interventions. Six studies were classified as good quality. The comparison group for all the studies was usual care; no studies compared different types of interventions. Studies consistently demonstrated a reduction in medication discrepancies (17 of 17 studies), potential adverse drug events (5 of 6 studies), and adverse drug events (2 of 2 studies) but showed an inconsistent reduction in postdischarge health care utilization (improvement in 2 of 8 studies). Key aspects of successful interventions included intensive pharmacy staff involvement and targeting the intervention to a high-risk patient population. CONCLUSIONS Rigorously designed studies comparing different inpatient medication reconciliation practices and their effects on clinical outcomes are scarce. Available evidence supports medication reconciliation interventions that heavily use pharmacy staff and focus on patients at high risk for adverse events. Higher-quality studies are needed to determine the most effective approaches to inpatient medication reconciliation.
A New in Situ Rhizosphere Sediment Sampling Method for Emergent Aquatic Plants

The rhizosphere provides a special environment for microorganisms. As such, emergent aquatic plants play an important role in wetlands. However, due to the sampling methods, it is difficult to obtain sediment samples attached to specific sections of roots. Here, we developed a sampling method for segmented acquisition of sediment and in situ detection of environmental factors from the rhizosphere. This method can be particularly useful for emergent aquatic plants with rhizomatic root systems.
A hybrid Radio Frequency and broadcast Visible Light Communication system

Wireless network data consumption is experiencing drastic increases due to growing demands of mobile services and applications. Deployed networks using Radio Frequency (RF) communications are characterized by a shared medium, limited available spectrum and limited ability to scale with increasing demand. Directional communications, including Visible Light Communications (VLC), can limit contention in controlled environments and provide scalability through spatial reuse of the medium. This solution can provide massive aggregate data capacity in indoor scenarios if properly distributed. In this paper we propose an indoor hybrid system that integrates WiFi and VLC luminaries. Our system utilizes (i) broadcast VLC channels to supplement RF communications and (ii) a handover mechanism between WiFi and VLC to dynamically distribute resources and optimize system throughput. This approach offers the bandwidth density benefits of VLC, provides a non-intrusive RF back-channel, maintains compatibility with conventional RF devices, and demonstrates excellent scalability. Analytical and simulation results show improvements in aggregate performance (i.e., throughput and delay) of the hybrid, when compared to either system acting alone.
C-MYC–induced Apoptosis in Polycystic Kidney Disease Is Bcl-2 and p53 Independent

The SBM mouse is a unique transgenic model of polycystic kidney disease (PKD) induced by the dysregulated expression of c-myc in renal tissue. In situ hybridization analysis demonstrated intense signal for the c-myc transgene overlying tubular cystic epithelium in SBM mice. Renal proliferation index in SBM kidneys was 10-fold increased over nontransgenic controls correlating with the presence of epithelial hyperplasia. The specificity of c-myc for the proliferative potential of epithelial cells was demonstrated by substitution of c-myc with the proto-oncogene c-fos or the transforming growth factor (TGF)-α within the same construct. No renal abnormalities were detected in 13 transgenic lines established, indicating that the PKD phenotype is dependent on functions specific to c-myc. We also investigated another well characterized function of c-myc, the regulation of apoptosis through pathways involving p53 and members of the bcl-2 family, which induce and inhibit apoptosis, respectively. The SBM kidney tissues, which overexpress c-myc, displayed a markedly elevated (10–100-fold) apoptotic index. However, no significant difference in bcl-2, bax, or p53 expression was observed in SBM kidney compared with controls. Direct proof that the heightened renal cellular apoptosis in PKD is not occurring through p53 was obtained by successive matings between SBM and p53−/− mice. All SBM offspring, irrespective of their p53 genotype, developed PKD with increased renal epithelial apoptotic index. In addition, overexpression of both bcl-2 and c-myc in double transgenic mice (SBB+/SBM+) also produced a similar PKD phenotype with a high apoptotic rate, showing that c-myc can bypass bcl-2 in vivo. Thus, the in vivo c-myc apoptotic pathway in SBM mice occurs through a p53- and bcl-2–independent mechanism. We conclude that the pathogenesis of PKD is c-myc specific and involves a critical imbalance between the opposing processes of cell proliferation and apoptosis.