Miracle-dz/UniFAR-FTUs huggingface dataset:
Influence of Saccharomyces boulardii CNCM I-745on the gut-associated immune system

Background The probiotic Saccharomyces boulardii CNCM I-745 (also known as Saccharomyces cerevisiae HANSEN CBS 5926; in the following S. boulardii) has proven its effectiveness in preventive and therapeutic treatment of many gastrointestinal diseases, especially diseases associated with acute diarrhea. In particular, antibiotic-associated diarrhea, Clostridium difficile-associated diarrhea, traveller’s diarrhea, as well as acute diarrhea due to common viral and bacterial infections in children and adults. Aim The aim of this review is to summarize the experimental studies elucidating the molecular and immunological mechanisms by which these clinically proven effects are archived, with an emphasis on the gut-associated immune system. The main focus is laid on anti-inflammatory and immune-modulatory action of S. boulardii involved in bacterial or enterotoxin-mediated diarrhea and inflammation. An attempt is made to differentiate between the effects associated with cellular versus soluble factors and between prophylactic and therapeutic effects. Methods A literature search was performed in PubMed/PubMed Central for the effects of S. boulardii on the gut-associated immune system (focus acute diarrhea). Results and conclusion S. boulardii exhibits its positive effect by the direct effects on pathogens or their toxins as well as by influencing the host’s infection-induced signaling cascades and its innate and adaptive immune system. The combination of these mechanisms results in a reduction of the pathogens’ ability for adhesion or colonization and an attenuation of the overreacting inflammatory immune response. Thereby, the integrity of the intestinal epithelial cell layer is preserved or restored, and the diarrheic leakage of fluids into the intestinal lumen is attenuated.
Reporting quality of search methods in systematic reviews of HIV behavioral interventions (2000–2010): are the searches clearly explained, systematic and reproducible?

Systematic reviews are an essential tool for researchers, prevention providers and policy makers who want to remain current with the evidence in the field. Systematic review must adhere to strict standards, as the results can provide a more objective appraisal of evidence for making scientific decisions than traditional narrative reviews. An integral component of a systematic review is the development and execution of a comprehensive systematic search to collect available and relevant information. A number of reporting guidelines have been developed to ensure quality publications of systematic reviews. These guidelines provide the essential elements to include in the review process and report in the final publication for complete transparency. We identified the common elements of reporting guidelines and examined the reporting quality of search methods in HIV behavioral intervention literature. Consistent with the findings from previous evaluations of reporting search methods of systematic reviews in other fields, our review shows a lack of full and transparent reporting within systematic reviews even though a plethora of guidelines exist. This review underscores the need for promoting the completeness of and adherence to transparent systematic search reporting within systematic reviews. Published 2013. This article is a U.S. Government work and is in the public domain in the USA.
Thermal strategies vary with life history stage

ABSTRACT With both global surface temperatures and the incidence and intensity of extreme temperature events projected to increase, the assessment of species' sensitivity to chronic and acute changes in temperature has become crucial. Sensitivity predictions are based predominantly on adult responses, despite the fact that early life stages may be more vulnerable to thermal challenge. Here, we compared the sensitivity of different life history stages of the intertidal gastropod Littorina obtusata using thermal death time curves, which incorporate the intensity and duration of heat stress, and used these to calculate upper critical thermal limits (CTmax) and sensitivity to temperature change (z). Early (larval) life stages had both a lower CTmax and a lower z than adults, suggesting they are less good at withstanding short-term extreme thermal challenges but better able to survive moderate temperatures in the long term. This result supports the predicted trade-off between acute and chronic tolerance to thermal stress, and is consistent with the different thermal challenges that these stages encounter in the intertidal zone. We conclude that different life history stages employ different thermal strategies that may be adaptive. Our findings caution against the use of predictions of the impact of global warming that are based on only adult responses and, hence, which may underestimate vulnerability. Summary: Littorina obtusata employs different thermal strategies at different life-history stages, suggesting an adaptive trade-off between acute and chronic thermal tolerance. Predictions of the impact of global warming based on only adult responses may underestimate vulnerability.
Independent phylogenetic origins of methanotrophic and chemoautotrophic bacterial endosymbioses in marine bivalves

The discovery of bacterium-bivalve symbioses capable of utilizing methane as a carbon and energy source indicates that the endosymbionts of hydrothermal vent and cold seep bivalves are not restricted to sulfur-oxidizing chemoautotrophic bacteria but also include methanotrophic bacteria. The phylogenetic origin of methanotrophic endosymbionts and their relationship to known symbiotic and free-living bacteria, however, have remained unexplored. In situ localization and phylogenetic analysis of a symbiont 16S rRNA gene cloned from the gills of a recently described deep-sea mussel species demonstrate that this symbiont represents a new taxon which is closely related to free-living, cultivable Type I methanotrophic bacteria. This symbiont is distinct from known chemoautotrophic symbionts. Thus, despite compelling similarities between the symbioses, chemoautotrophic and methanotrophic symbionts of marine bivalves have independent phylogenetic origins.
Helminth Parasites of the Blue-Footed Booby on Isla Isabel, México

abstract: A survey of the helminth fauna of the blue-footed booby, Sula nebouxii, on Isla Isabel, off the Pacific coast of México, is presented. Eight parasite species were found: 4 digeneans (Galactosomum puffini, Mesostephanus microbursa, Opisthometra planicollis, and Renicola thapari), 3 nematodes (Contracaecum sp., Porrocaecum sp., and Tetrameres sp.), and 1 cestode (Tetrabothrius sp). All these species are reported for the first time in the blue-footed booby, and they represent 8 new locality records as well. Species accumulation curves suggest these 8 parasite species comprise the total helminth fauna of this population of boobies. The most frequent and abundant parasite was R. thapari, inhabiting the kidney of its host. In male boobies, a significant negative correlation was found between abundance of R. thapari and host body condition.
Effects of dietary protein intake on body composition changes after weight loss in older adults: a systematic review and meta-analysis.

CONTEXT The impact of dietary protein on body composition changes after older adults purposefully lose weight requires systematic evaluation OBJECTIVE : This systematic review and meta-analysis assessed the effects of protein intake (< 25% vs ≥ 25% of energy intake or 1.0 g/kg/d) on energy restriction-induced changes in body mass, lean mass, and fat mass in adults older than 50 years. DATA SOURCES PubMed, Cochrane, Scopus, and Google Scholar were searched using the keywords "dietary proteins," "body composition," "skeletal muscle," and "muscle strength. " STUDY SELECTION Two researchers independently screened 1542 abstracts. DATA EXTRACTION Information was extracted from 24 articles. DATA SYNTHESIS Twenty randomized control trials met the inclusion criteria. CONCLUSION Older adults retained more lean mass and lost more fat mass during weight loss when consuming higher protein diets.
Probing principles of large‐scale object representation: Category preference and location encoding

Knowledge about the principles that govern large‐scale neural representations of objects is central to a systematic understanding of object recognition. We used functional magnetic resonance imaging (fMRI) and multivariate pattern classification to investigate two such candidate principles: category preference and location encoding. The former designates the preferential activation of distinct cortical regions by a specific category of objects. The latter refers to information about where in the visual field a particular object is located. Participants viewed exemplars of three object categories (faces, bodies, and scenes) that were presented left or right of fixation. The analysis of fMRI activation patterns revealed the following. Category‐selective regions retained their preference to the same categories in a manner tolerant to changes in object location. However, category preference was not absolute: category‐selective regions also contained location‐tolerant information about nonpreferred categories. Furthermore, location information was present throughout high‐level ventral visual cortex and was distributed systematically across the cortical surface. We found more location information in lateral‐occipital cortex than in ventral‐temporal cortex. Our results provide a systematic account of the extent to which the principles of category preference and location encoding determine the representation of objects in the high‐level ventral visual cortex. Hum Brain Mapp, 2013. © 2012 Wiley Periodicals, Inc.
Interactions among mononitrophenol isomers during biodegradation of their mixtures

Continuous aerobic biodegradation of 4-NP, 3-NP and 2-NP mixture was monitored in a packed bed reactor in simulated wastewater with a mixed microbial culture immobilized on expanded slate. Substrate loading was varied by increasing the concentration of one isomer while keeping the other two at constant levels, all at a constant residence time of 60 min. At large concentrations, all of the individual NP isomers suppressed the degradation rates of the other isomers at steady state; however, the observed patterns and threshold concentrations were different for all three substrates. As a result, conditions were determined for stable and efficient removal of NP mixtures. Changes of the biofilm composition during a long-term operation were identified.
Abundance and Genetic Diversity of Aerobic Anoxygenic Phototrophic Bacteria of Coastal Regions of the Pacific Ocean

ABSTRACT Aerobic anoxygenic phototrophic (AAP) bacteria are photoheterotrophic microbes that are found in a broad range of aquatic environments. Although potentially significant to the microbial ecology and biogeochemistry of marine ecosystems, their abundance and genetic diversity and the environmental variables that regulate these properties are poorly understood. Using samples along nearshore/offshore transects from five disparate islands in the Pacific Ocean (Oahu, Molokai, Futuna, Aniwa, and Lord Howe) and off California, we show that AAP bacteria, as quantified by the pufM gene biomarker, are most abundant near shore and in areas with high chlorophyll or Synechococcus abundance. These AAP bacterial populations are genetically diverse, with most members belonging to the alpha- or gammaproteobacterial groups and with subclades that are associated with specific environmental variables. The genetic diversity of AAP bacteria is structured along the nearshore/offshore transects in relation to environmental variables, and uncultured pufM gene libraries suggest that nearshore communities are distinct from those offshore. AAP bacterial communities are also genetically distinct between islands, such that the stations that are most distantly separated are the most genetically distinct. Together, these results demonstrate that environmental variables regulate both the abundance and diversity of AAP bacteria but that endemism may also be a contributing factor in structuring these communities.
Microphone Array Post-Filter Based on Auditory Filtering

In this paper, an auditory filtering based microphone array post-filter is proposed to enhance the quality of the output signal. By using a gammatone filterbank to band pass each input of the array, the input signals are decomposed into a two-dimensional T-F representation. Then, for each auditory filter channel, the post-filter's coefficients are estimated in each frame using the decomposed multi-channel input signals. Followed by the post-filtering and synthesis processing, the enhanced speech with better quality is acquired. Systematical evaluations on the CMU microphone array database prove that the proposed method could improve not only the noise reduction measure but also the speech quality measures.
British Water Beetles

AQUATIC Coleoptera have long been favourite objects of study, especially by the biologist and the physiologist. Dytiscus, Gyrinus and Hydrophilus, for example, have alone attracted the attention of many investigators and a bibliography of their written contributions on these creatures would fill many printed pages. The present volume deals with members of the Haliplidse, Hygrobiidse and part of the Dytiscidse. It is concerned more especially with the habits and distribution of their species and is not intended as a systematic treatise. It will be noted that keys, therefore, take the place of detailed descriptions as aids to the identification of the various species. Prof. Balfour–Browne has devoted many years to the study of water beetles and is probably better qualified than anyone else in England to describe their natural history and where to find them. Coleopterists will welcome the appearance of this well–produced volume and look forward to the completion of the work when circumstances permit.British Water BeetlesBy Frank Balfour–Browne. Vol. 1. (Ray Society Vol. 127 for 1939.) Pp. xx + 376 + 5plates. (London: Bernard Quaritch, Ltd., 1940.) 25s.
Structural characteristics of low torque and ring spun yarns

In this paper we present a comparative study on the structural characteristics of three-dimensional fiber configurations in low torque and ring spun yarns. Three-dimensional configurations of tracer fibers in the two types of yarns were measured by a continuous measurement system. Critical parameters were obtained, including the occurrence frequencies of unique features, the radial position, fiber spatial orientation angle, migration frequency, and amplitude. Results reveal that nearly half of the fiber specimens in low torque yarns followed a deformed non-concentric conical helix of which the size of helical loops varies significantly and the axis of the helix does not coincide with the yarn axis. Local reversion phenomena appear on many fiber segments. In addition, most fibers in low torque yarns are located close to the yarn center, and alter their radial position in a yarn with larger amplitude. Those features offer an explanation for the excellent physical properties of low torque yarns, that is, low twist, high strength, and low residual torque.
Cumulative stress restricts niche filling potential of habitat‐forming kelps in a future climate

Abstract Climate change is driving range contractions and local population extinctions across the globe. When this affects ecosystem engineers the vacant niches left behind are likely to alter the wider ecosystem unless a similar species can fulfil them. Here, we explore the stress physiology of two coexisting kelps undergoing opposing range shifts in the Northeast Atlantic and discuss what differences in stress physiology may mean for future niche filling. We used chlorophyll florescence (F v /F m) and differentiation of the heat shock response (HSR) to determine the capacity of the expanding kelp, Laminaria ochroleuca, to move into the higher shore position of the retreating kelp, Laminaria digitata. We applied both single and consecutive exposures to immersed and emersed high and low temperature treatments, replicating low tide exposures experienced in summer and winter. No interspecific differences in HSR were observed which was surprising given the species’ different biogeographic distributions. However, chlorophyll florescence revealed clear differences between species with L. ochroleuca better equipped to tolerate high immersed temperatures but showed little capacity to tolerate frosts or high emersion temperatures. Many patterns observed were only apparent after consecutive exposures. Such cumulative effects have largely been overlooked in tolerance experiments on intertidal organisms despite being more representative of the stress experienced in natural habitats. We therefore suggest future experiments incorporate consecutive stress into their design. Climate change is predicted to result in fewer ground frosts and increased summer temperatures. Therefore, L. ochroleuca may be released from its summer cold limit in winter but still be prevented from moving up the shore due to desiccation in the summer. Laminaria ochroleuca will, however, likely be able to move into tidal pools. Therefore, only partial niche filling by L. ochroleuca will be possible in this system as climate change advances. A plain language summary is available for this article.
Lower genital tract infections in HIV-seropositive women in India

Objectives: The presence of STD facilitates shedding of HIV and increases HIV-1 disease progression, possibly by increasing plasma viremia. Our aim was to study the presence of various associated Sexually transmitted disease/Reproductory tract infections in HIV-seropositive women in India. Materials and Methods: The study included 40 HIV-seropositive women attending the antiretroviral therapy (ART) clinic at Lok Nayak Hospital. An informed consent was taken from all subjects. All cases were subjected to detailed gynecological examination and two types of swabs, i.e., a vaginal swab and a cervical swab were taken for STD/RTIs evaluation. The vaginal swabs were used for preparation of wet mount and KOH mount for diagnosis of trichomoniasis and candidiasis; to make a vaginal smear for Gram staining to diagnose bacterial vaginosis (BV) as per Nugent's criteria; for culture of aerobic bacteria and Candida spp. The cervical swab was used for isolation of Neisseria gonorrhoeae by culture and for detection of Chlamydia trachomatis antigen by Chlamydia microplate enzyme immunoassay kit (BIORAD). All data were analyzed using appropriate statistical tests. Results: All 40 cases were evaluated for the presence of STD/RTIs associated with HIV infection. The women belonged to the reproductive age group (15-45 years) and majority (40%) of them were para 2. Most of the women (14, 35%) were in World Health Organization (WHO) stage I and maximum number (28, 70%) had their CD4 cell count more than 200 cells/ml. There was no significant correlation between WHO stage of HIV-seropositive women and their CD4 cell count (P=0.092). Out of 40 cases, 15 (37.5%) were on ART with maximum cases (53.3%) in WHO stage III. The duration of ART was more than 6 months in 9 (60%) cases. The most common presenting complaint was vaginal discharge in women with WHO stage II and III and 27.5% women showed vaginitis on per speculum examination. Laboratory tests showed high prevalence of BV (30%), mixed infection (30%), and candidiasis (10%) among HIV-seropositive women (P<0.001 in both). Women with BV were mostly in WHO stage I (38.4%) and stage II (36.3%), while those with mixed infection were mainly in WHO stage III (36.3%) and stage IV (40%). Women with candidiasis were mainly in WHO stage III. C. trachomatis antigen was found only in one subject (prevalence 2.5%). Both WHO stage and CD4 cell count had no significant correlation with presence of BV (P=0.056 and 0.063, respectively) and candidiasis (P=0.492 and 0.530, respectively). Maximum number of patients on ART had mixed infection (53.3%), while most of the patients (36%) not on ART had BV. There was no significant association between duration of ART and the presence of vaginal infections. Conclusions: The prevalence of gynecological symptoms and RTIs in HIV-seropositive women is high enough to warrant routine gynecologic evaluation and RTI screening in these patients. However, larger studies and trials are needed to evaluate the effects of ART on these abnormalities as well as to choose the best screening tool in HIV-seropositive women.
Pressure Injury Prevention: Knowledge and Attitudes of Iranian Intensive Care Nurses

BACKGROUND: Pressure injuries are the third most expensive condition after cancer and cardiovascular disease. Nurses are responsible for the direct and continuous care, treatment, and prevention of pressure injuries. To achieve optimal quality care, nursing knowledge and attitudes must be based on the best scientific evidence. This study aimed to examine the knowledge and attitudes of nurses working in intensive care units of hospitals affiliated with Zahedan Medical Sciences University regarding the prevention of pressure injuries. METHODS: This was a descriptive analytic study involving 89 critical care nurses. Data analysis was conducted using a 3-part questionnaire: demographic data, knowledge, and attitudes of intensive care nurses toward the prevention of pressure injuries. Collected data were analyzed with SPSS version 19 (IBM, Armonk, New York), using descriptive and inferential statistics (such as Pearson correlation coefficient, independent t test, and analysis of variance). RESULTS: The results showed that the mean ± SD score of pressure injury knowledge was 0.44 ± 0.12, and the attitude of participants toward pressure injury prevention was 2.69 ± 0.47. Scores varied widely; “nutrition” showed the highest mean score (0.71 ± 0.45), but “etiology and development” (0.42 ± 0.21) and “classification and observation” (0.42 ± 0.24) showed the lowest mean scores. Of the different aspects of attitudes toward pressure injury prevention, “the impact of pressure injuries” showed the highest mean score (2.95 ± 0.56), and “confidence in the effectiveness of prevention” showed the lowest mean score (2.56 ± 0.46). A statistically significant relationship was observed between pressure injury knowledge and attitudes toward pressure injury prevention (P < .001). CONCLUSIONS: Pressure injury prevention is one of many nursing care priorities and is a key indicator of the quality of nursing care. In order to achieve optimal quality care in this area, nurse managers and other administrators should make efforts to improve nursing knowledge and attitudes based on the latest scientific evidence for pressure injury prevention.
Foraging behavior and at-sea distribution of White-Tailed Tropicbirds in tropical ocean

We used miniaturized GPS loggers and site observations to access foraging patterns and nest behaviour of the White-tailed Tropicbird Phaethon lepturus (WTTB), an endangered species at its South Atlantic breeding colony. Dual foraging pattern was observed with alternation between long and short foraging trips. Birds responsible for nest attendance engaged in short foraging trips with mean distance from colony of 25 ± 17 km, total distance covered of 79 ± 65 km and mean duration of 4.02 ± 5.28 hours. Birds flew by dawn and returned before dusk while partners were at sea for long foraging trips that ranged from four to 11 days, with mean maximum distance from colony of 105 ± 47.48 km. Chicks were usually left alone for hours and chick predation by Land Crab Johngartia lagostroma, egg consumption by Goniopsis cruentata and intra-specific competition are suspected to be responsible for high chick mortality rates.