Miracle-dz/UniFAR-FTUs huggingface dataset:
Hepatitis C virus infection among prisoners in the California state correctional system.

BACKGROUND Incarcerated populations are at high risk for hepatitis C virus (HCV) infection, yet prisoners are not routinely screened or treated for HCV infection. Understanding the risk factors of HCV infection among prisoners could help improve HCV interventions. METHODS Prevalence and risk of HCV infection among 469 prisoners entering California State correctional facilities were assessed using HCV antibody screening, HCV RNA measurement, and structured interviews. Multivariate logistic regression analysis was used to identify independent correlates of HCV infection. RESULTS The prevalence of HCV infection was 34.3% overall (95% confidence interval [CI], 30%-38%) and was 65.7% among those with a history of injection drug use (IDU), compared with 10.2% among those with no history of IDU (odds ratio [OR], 17.24; 95% CI, 10.52-28.25). Significant differences in HCV antibody positivity were found in association with age at first detention but not with the nature of the crime. Independent correlates of HCV infection included age, history of IDU, cumulative time of incarceration, biological sex (OR for females subjects compared with males subjects, 0.35; 95% CI, 0.13-0.96), and a history of having sex with a male IDU (OR, 4.42; 95% CI, 1.46-13.37). We identified significant differences in risk factors between male and female subjects--notably, that the risk of HCV infection was significantly elevated among female non-IDUs who reported having sexual partners with a history of IDU. Among non-IDUs, correlates of HCV infection included history of receipt of blood products and cumulative years of incarceration. CONCLUSIONS HCV infection is pervasive among the California prison population, including prisoners who are non-IDUs and women with high-risk sexual behavior. These results should promote consideration of routine HCV antibody screening and behavioral interventions among incarcerated men and women.
CD4+ T Cells Are Important Mediators of Oxidative Stress That Cause Hypertension in Response to Placental Ischemia

Preeclampsia is associated with oxidative stress, which is suspected to play a role in hypertension, placental ischemia, and fetal demise associated with the disease. Various cellular sources of oxidative stress, such as neutrophils, monocytes, and CD4+ T cells have been suggested as culprits in the pathophysiology of preeclampsia. The objective of this study was to examine a role of circulating and placental CD4+ T cells in oxidative stress in response to placental ischemia during pregnancy. CD4+ T cells and oxidative stress were measured in preeclamptic and normal pregnant women, placental ischemic and normal pregnant rats, and normal pregnant recipient rats of placental ischemic CD4+ T cells. Women with preeclampsia had significantly increased circulating (P=0.02) and placental CD4+ T cells (P=0.0001); lymphocyte secretion of myeloperoxidase (P=0.004); and placental reactive oxygen species (P=0.0004) when compared with normal pregnant women. CD4+ T cells from placental ischemic rats cause many facets of preeclampsia when injected into normal pregnant recipient rats on gestational day 13. On gestational day 19, blood pressure increased in normal pregnant recipients of placental ischemic CD4+ T cells (P=0.002) compared with that in normal pregnant rats. Similar to preeclamptic patients, CD4+ T cells from placental ischemic rats secreted significantly more myeloperoxidase (P=0.003) and induced oxidative stress in cultured vascular cells (P=0.003) than normal pregnant rat CD4+Tcells. Apocynin, a nicotinamide adenine dinucleotide phosphate inhibitor, attenuated hypertension and all oxidative stress markers in placental ischemic and normal pregnant recipient rats of placental ischemic CD4+Tcells (P=0.05). These data demonstrate an important role for CD4+ T cells in mediating another factor, oxidative stress, to cause hypertension during preeclampsia.
Extreme Precipitation in the West African Cities of Dakar and Ouagadougou—Atmospheric Dynamics and Implications for Flood Risk Assessments

AbstractTwo extreme, high-impact events of heavy rainfall and severe floods in West African urban areas (Ouagadougou on 1 September 2009 and Dakar on 26 August 2012) are investigated with respect to their atmospheric causes and statistical return periods. In terms of the synoptic–convective dynamics, the Ouagadougou case is truly extraordinary. A succession of two slow-moving African easterly waves (AEWs) caused record-breaking values of tropospheric moisture. The second AEW, one of the strongest in recent decades, provided the synoptic forcing for the nighttime genesis of mesoscale convective systems (MCSs). Ouagadougou was hit by two MCSs within 6 h, as the strong convergence and rotation in the AEW-related vortex allowed a swift moisture refueling. An AEW was also instrumental in the overnight development of MCSs in the Dakar case, but neither the AEW vortex nor the tropospheric moisture content was as exceptional as in the Ouagadougou case. Tropical Rainfall Measuring Mission (TRMM) 3B42 precipitation.
Peptidyl-prolyl Isomerase Pin1 Controls Down-regulation of Conventional Protein Kinase C Isozymes*

Background: Conventional PKC isozymes have a putative Pin1 isomerization sequence at their turn motif phosphorylation site. Results: Pin1 binds conventional PKCs and promotes their activation-induced down-regulation. Conclusion: Pin1 isomerizes the phosphorylated turn motif of conventional PKC isozymes, priming them for subsequent down-regulation. Significance: Pin1 provides a switch regulating the lifetime of conventional PKCs. The down-regulation or cellular depletion of protein kinase C (PKC) attendant to prolonged activation by phorbol esters is a widely described property of this key family of signaling enzymes. However, neither the mechanism of down-regulation nor whether this mechanism occurs following stimulation by physiological agonists is known. Here we show that the peptidyl-prolyl isomerase Pin1 provides a timer for the lifetime of conventional PKC isozymes, converting the enzymes into a species that can be dephosphorylated and ubiquitinated following activation induced by either phorbol esters or natural agonists. The regulation by Pin1 requires both the catalytic activity of the isomerase and the presence of a Pro immediately following the phosphorylated Thr of the turn motif phosphorylation site, one of two C-terminal sites that is phosphorylated during the maturation of PKC isozymes. Furthermore, the second C-terminal phosphorylation site, the hydrophobic motif, docks Pin1 to PKC. Our data are consistent with a model in which Pin1 binds the hydrophobic motif of conventional PKC isozymes to catalyze the isomerization of the phospho-Thr-Pro peptide bond at the turn motif, thus converting these PKC isozymes into species that can be efficiently down-regulated following activation.
Efficacy and Safety of LixiLan, a Titratable Fixed-Ratio Combination of Lixisenatide and Insulin Glargine, Versus Insulin Glargine in Type 2 Diabetes Inadequately Controlled on Metformin Monotherapy: The LixiLan Proof-of-Concept Randomized Trial

OBJECTIVE This study assessed the efficacy and safety of LixiLan, a fixed-ratio, titratable, combination of 2 units insulin glargine (Gla-100) and 1 μg lixisenatide administered once daily via a single pen, versus Gla-100 in insulin-naïve type 2 diabetes on metformin. RESEARCH DESIGN AND METHODS Participants were randomized to once-daily LixiLan (n = 161) or Gla-100 (n = 162) for 24 weeks, while continuing metformin. LixiLan and Gla-100 were started at 10 units/5 μg and 10 units, respectively, and titrated based on the Gla-100 requirement according to fasting plasma glucose levels. The primary objective was to test noninferiority (upper bound of the 95% CI ≤0.4%) of LixiLan in reducing HbA1c; if met, statistical superiority was tested. Secondary objectives included body weight changes, hypoglycemia, and safety. RESULTS Baseline characteristics (mean age 57 years, diabetes duration 6–7 years, BMI 32 kg/m2) were similar between groups. At week 24, mean HbA1c was reduced from 8.0% (64 mmol/mol) at baseline to 6.3% (45 mmol/mol) and 6.5% (48 mmol/mol) with LixiLan and Gla-100, respectively, establishing statistical noninferiority and superiority of LixiLan (least-squared mean [95% CI] difference: −0.17% [−0.31, −0.04] {−1.9 mmol/mol [−3.4, −0.4]}; P = 0.01). HbA1c <7.0% (<53 mmol/mol) was achieved in 84% and 78% of participants (nonsignificant), respectively. LixiLan improved 2-h postmeal plasma glucose versus Gla-100 (least-squared mean difference: –3.17 mmol/L [–57 mg/dL]; P < 0.0001). Body weight was reduced with LixiLan (–1 kg) and increased with Gla-100 (+0.5 kg; P < 0.0001), with no increase in hypoglycemic events (∼25% in each group). The incidence of nausea (7.5%) and vomiting (2.5%) was low with LixiLan. CONCLUSIONS LixiLan achieved statistically significant reductions to near-normal HbA1c levels with weight loss and no increased hypoglycemic risk, compared with insulin glargine alone, and a low incidence of gastrointestinal adverse events in type 2 diabetes inadequately controlled on metformin.
Reproducing American Sign Language sentences: cognitive scaffolding in working memory

The American Sign Language Sentence Reproduction Test (ASL-SRT) requires the precise reproduction of a series of ASL sentences increasing in complexity and length. Error analyses of such tasks provides insight into working memory and scaffolding processes. Data was collected from three groups expected to differ in fluency: deaf children, deaf adults and hearing adults, all users of ASL. Quantitative (correct/incorrect recall) and qualitative error analyses were performed. Percent correct on the reproduction task supports its sensitivity to fluency as test performance clearly differed across the three groups studied. A linguistic analysis of errors further documented differing strategies and bias across groups. Subjects' recall projected the affordance and constraints of deep linguistic representations to differing degrees, with subjects resorting to alternate processing strategies when they failed to recall the sentence correctly. A qualitative error analysis allows us to capture generalizations about the relationship between error pattern and the cognitive scaffolding, which governs the sentence reproduction process. Highly fluent signers and less-fluent signers share common chokepoints on particular words in sentences. However, they diverge in heuristic strategy. Fluent signers, when they make an error, tend to preserve semantic details while altering morpho-syntactic domains. They produce syntactically correct sentences with equivalent meaning to the to-be-reproduced one, but these are not verbatim reproductions of the original sentence. In contrast, less-fluent signers tend to use a more linear strategy, preserving lexical status and word ordering while omitting local inflections, and occasionally resorting to visuo-motoric imitation. Thus, whereas fluent signers readily use top-down scaffolding in their working memory, less fluent signers fail to do so. Implications for current models of working memory across spoken and signed modalities are considered.
No association between vitamin D levels around time of birth and later risk of developing oligo- and polyarticular juvenile idiopathic arthritis: a Danish case–cohort study

Objectives: Basic and epidemiological studies on rheumatic autoimmune diseases have suggested an association between vitamin D levels around time of birth and disease risk. The literature on vitamin D and juvenile idiopathic arthritis (JIA) is scarce. We hypothesized that low levels of 25-hydroxyvitamin D [25(OH)D] around time of birth would be associated with increased risk of oligo- or polyarticular JIA. Method: We conducted a case–cohort study of validated cases diagnosed with oligo- and polyarticular JIA (1993–2012) and controls matched on date of birth. Cases and controls were born in the period 1983–2010. Cases were diagnosed using international criteria. The concentration of 25(OH)D was assessed from neonatal dried blood spot (DBS) samples using high-sensitivity liquid chromatography tandem mass spectrometry (LC-MS/MS). Odds ratios (ORs) were calculated using conditional logistic regression and a two-way analysis of variance (ANOVA) was used to test for season and birth year 25(OH)D variations. A total of 300 matched pairs were included in the statistical analyses. Results: No significant association was found between levels of 25(OH)D and JIA risk in the adjusted model [OR (per 25 nmol/L increase) 1.2, 95% confidence interval (CI) 0.9–1.6, p = 0.2]. 25(OH)D levels were found to fluctuate significantly with season (p < 0.0001) and year (p < 0.0001). The median level of 25(OH)D was 34.4 nmol/L in cases and 31.5 nmol/L in controls. Conclusions: Our study does not support the hypothesis that a window of vulnerability exists around time of birth with regard to 25(OH)D levels and later JIA risk. Further studies should explore whether 25(OH)D levels during early pregnancy or infancy may influence JIA risk.
Arbuscular Mycorrhizal Fungi for the Biocontrol of Plant-Parasitic Nematodes: A Review of the Mechanisms Involved

Arbuscular mycorrhizal fungi (AMF) are obligate root symbionts that can protect their host plant against biotic stress factors such as plant-parasitic nematode (PPN) infection. PPN consist of a wide range of species with different life styles that can cause major damage in many important crops worldwide. Various mechanisms have been proposed to play a role in the biocontrol effect of AMF against PPN. This review presents an overview of the different mechanisms that have been proposed, and discusses into more detail the plausibility of their involvement in the biocontrol against PPN specifically. The proposed mechanisms include enhanced plant tolerance, direct competition for nutrients and space, induced systemic resistance (ISR) and altered rhizosphere interactions. Recent studies have emphasized the importance of ISR in biocontrol and are increasingly placing rhizosphere effects on the foreground as well, both of which will be the focal point of this review. Though AMF are not yet widely used in conventional agriculture, recent data help to develop a better insight into the modes of action, which will eventually lead toward future field applications of AMF against PPN. The scientific community has entered an exciting era that provides the tools to actually unravel the underlying molecular mechanisms, making this a timely opportunity for a review of our current knowledge and the challenges ahead.
Azimuthal Seismic Anisotropy of 70‐Ma Pacific‐Plate Upper Mantle

Plate formation and evolution processes are predicted to generate upper mantle seismic anisotropy and negative vertical velocity gradients in oceanic lithosphere. However, predictions for upper mantle seismic velocity structure do not fully agree with the results of seismic experiments. The strength of anisotropy observed in the upper mantle varies widely. Further, many refraction studies observe a fast direction of anisotropy rotated several degrees with respect to the paleospreading direction, suggesting that upper mantle anisotropy records processes other than 2‐D corner flow and plate‐driven shear near mid‐ocean ridges. We measure 6.0 ± 0.3% anisotropy at the Moho in 70‐Ma lithosphere in the central Pacific with a fast direction parallel to paleospreading, consistent with mineral alignment by 2‐D mantle flow near a mid‐ocean ridge. We also find an increase in the strength of anisotropy with depth, with vertical velocity gradients estimated at 0.02 km/s/km in the fast direction and 0 km/s/km in the slow direction. The increase in anisotropy with depth can be explained by mechanisms for producing anisotropy other than intrinsic effects from mineral fabric, such as aligned cracks or other structures. This measurement of seismic anisotropy and gradients reflects the effects of both plate formation and evolution processes on seismic velocity structure in mature oceanic lithosphere, and can serve as a reference for future studies to investigate the processes involved in lithospheric formation and evolution.
Observed Trends of Climate and River Discharge in Mongolia’s Selenga Sub-Basin of the Lake Baikal Basin

Mongolia’s Selenga sub-basin of the Lake Baikal basin is spatially extensive, with pronounced environmental gradients driven primarily by precipitation and air temperature on broad scales. Therefore, it is an ideal region to examine the dynamics of the climate and the hydrological system. This study investigated the annual precipitation, air temperature, and river discharge variability at five selected stations of the sub-basin by using Mann-Kendall (MK), Innovative trend analysis method (ITAM), and Sen’s slope estimator test. The result showed that the trend of annual precipitation was slightly increasing in Ulaanbaatar (Z = 0.71), Erdenet (Z = 0.13), and Tsetserleg (Z = 0.26) stations. Whereas Murun (Z = 2.45) and Sukhbaatar (Z = 1.06) stations showed a significant increasing trend. And also, the trend of annual air temperature in Ulaanbaatar (Z = 5.88), Erdenet (Z = 3.87), Tsetserleg (Z = 4.38), Murun (Z = 4.77), and Sukhbaatar (Z = 2.85) was sharply increased. The average air temperature has significantly increased by 1.4 °C in the past 38 years. This is very high in the semi-arid zone of central Asia. The river discharge showed a significantly decreasing trend during the study period years. It has been apparent since 1995. The findings of this paper could help researchers to understand the annual variability of precipitation, air temperature, and river discharge over the study region and, therefore, become a foundation for further studies.
Clinical utility of capsule endoscopy with flexible spectral imaging color enhancement for diagnosis of small bowel lesions

Background and study aims: The clinical utility of computed virtual chromoendoscopy with flexible spectral imaging color enhancement (FICE) in capsule endoscopy (CE) remains controversial. To clarify the clinical utility of FICE-enhanced CE in evaluating small bowel lesions, we quantitatively assessed white light (WL), FICE, and blue mode (BM) images and examined the sensitivity of these 3 imaging modes of small-bowel lesions from patients who underwent CE. Methods: The CIELAB color difference (∆E) and visual analogue scales (VAS) were measured in 261 CE images (3 different lesion categories) using WL and FICE set 1, 2, and 3, and BM images, respectively. Three endoscopists reviewed CE videos with WL, 3 FICE mode settings, and BM, and compared the sensitivity and detectability for small intestinal diseases from 50 patients who underwent CE. Results: In the assessment of visibility in the 152 vascular lesion images, the ∆E and VAS of FICE set 1, 2, and BM images were significantly higher than that of WL images. In 88 erosion/ulceration images, the ∆E and VAS of FICE set 1 and 2 images were significantly higher than that of WL images. In 21 tumor images, there were no significant differences in ∆E among these modalities. When analyzed on a per-patient basis, FICE settings 1 and 2 had the highest sensitivity (100 %) and specificity (97.3 – 100 %) for vascular lesions. As for erosive/ulcerative lesions, FICE setting 2 had the highest sensitivity (100 %) and specificity (97.2 %). For tumors or polyps, WL had the highest sensitivity (90.9 %) and specificity (87.1 %). In per-lesion analysis, FICE settings 1 and 2 showed significantly superior detection ability over WL for vascular lesions. In the detection of erosive/ulcerative lesions, FICE setting 2 was significantly superior to WL. In tumor images, there was no significant improvement with any of the settings relative to WL images. Conclusions: FICE is most useful for improving CE image quality and detection in cases of angioectasia and erosion/ulceration of the small intestine.
Science and Religion

FOR two hundred years, popular writers have attacked traditional religious beliefs in the name of science and pretty well undermined the faith of the plain man. Now, however, the sceptical attitude is turned against science itself, at a moment when, thanks to recent developments of physical theory, science appears vulnerable intellectually and, thanks to recent developments of military and political technique, still more vulnerable morally. Modern men, finding themselves with nothing to put their faith in, fill the spiritual vacuum with bogus religion based on bogus science, like Nazism and Communism. Even the more modest alternative, the assurance that all problems are technological and that the salvation of mankind depends on bigger and better gadgets, is not entirely satisfactory. The new quarterly magazine, Science and Religion (edited by* Dr. Robert E. D. Clark, Paternoster Press, Ludgate House, Fleet Street, London, E.C.4. 1s. 6d. per copy), is intended, as the editor says, "to make science cultural ; to show how science may strengthen religious belief instead of being allowed to develop independently and unconnected with our deepest needs". It is intended for the general public and particularly the young who learn something about science at school and are eager to know more. The articles in the first two numbers are excellently designed for their purpose. They are short, simply written and informative. Many of them are reviews of recent important books. The subjects include chemistry, biology, anthropology, psychology on the more purely scientific side, also historical and philosophical work. If the present standard can be maintained, the venture deserves to be a success.
Smokeless tobacco (paan and gutkha) consumption, prevalence, and contribution to oral cancer

Smokeless tobacco consumption, which is widespread throughout the world, leads to oral submucous fibrosis (OSMF), which is a long-lasting and devastating condition of the oral cavity with the potential for malignancy. In this review, we mainly focus on the consumption of smokeless tobacco, such as paan and gutkha, and the role of these substances in the induction of OSMF and ultimately oral cancer. The list of articles to be examined was established using citation discovery tools provided by PubMed, Scopus, and Google Scholar. The continuous chewing of paan and swallowing of gutkha trigger progressive fibrosis in submucosal tissue. Generally, OSMF occurs due to multiple risk factors, especially smokeless tobacco and its components, such as betel quid, areca nuts, and slaked lime, which are used in paan and gutkha. The incidence of oral cancer is higher in women than in men in South Asian countries. Human oral epithelium cells experience carcinogenic and genotoxic effects from the slaked lime present in the betel quid, with or without areca nut. Products such as 3-(methylnitrosamino)-proprionitrile, nitrosamines, and nicotine initiate the production of reactive oxygen species in smokeless tobacco, eventually leading to fibroblast, DNA, and RNA damage with carcinogenic effects in the mouth of tobacco consumers. The metabolic activation of nitrosamine in tobacco by cytochrome P450 enzymes may lead to the formation of N-nitrosonornicotine, a major carcinogen, and micronuclei, which are an indicator of genotoxicity. These effects lead to further DNA damage and, eventually, oral cancer.
Cerebellar degeneration following long‐term phenytoin therapy

Diffuse loss of cerebellar Purkinje cells and, to some extent, of granule cells occurred in a 78-year-old woman who had been continually treated with phenytoin for more than 20 years and in whom progressive cerebellar deficits developed in the later years of life. In the absence of other demonstrable cause, the selective morphologic changes in the cerebellum are attributed to long-term administration of phenytoin.