Miracle-dz/UniFAR-FTUs huggingface dataset:
Inflammatory and immunological profiles in patients with COPD: relationship with FEV 1 reversibility

ABSTRACT Objective: To determine whether COPD severity correlates with sputum cell counts, atopy, and asthma. Methods: This was a cross-sectional study involving 37 patients with COPD and 22 healthy subjects with normal lung function (controls). Sputum cell counts were determined by microscopy after centrifugation of samples. Skin prick tests were performed, and serum cytokines were determined by ELISA. Results: Patients were stratified by bronchodilator response: a non-reversible airflow limitation (nonRAL) group comprised 24 patients showing no significant post-bronchodilator change in FEV1; and a partially reversible airflow limitation (partialRAL) group comprised 13 patients showing FEV1 reversibility (post-bronchodilator FEV1 increase ≥ 12%). The proportion of eosinophils in sputum was higher in the partialRAL group than in the nonRAL group (p < 0.01), and there was an inverse correlation between the proportion of eosinophils and FEV1 (p < 0.05). However, none of the patients had a history of asthma and skin prick test results did not differ between the two groups. In the patient sputum samples, neutrophils predominated. Serum levels of TNF, IL-6, IL-8, and RANTES (CCL5) were higher in patients than in controls (p < 0.001) but did not differ between the two patient groups. Conclusions: COPD patients with partial FEV1 reversibility appear to have higher sputum eosinophil counts and greater airway hyperresponsiveness than do those with no FEV1 reversibility. However, we found that COPD severity did not correlate with atopy or with the cytokine profile.
Contribution of the B oligomer to the protective activity of genetically attenuated pertussis toxin

An enzymatically deficient recombinant S1 subunit, in which Arg-9 was replaced by Lys, was combined with native B oligomer to form a mutant holotoxin molecule. This molecule exhibited decreased leukocytosis-promoting and histamine-sensitizing activities compared with those of the native toxin, supporting the view that the B oligomer is not responsible for these activities. The protective activity of this genetically attenuated pertussis toxin was compared with that of B oligomer alone. The mutant pertussis toxin and B oligomer were similarly capable of protecting mice against a respiratory infection with Bordetella pertussis, suggesting that the B oligomer makes a significant contribution to the protection afforded by the genetically attenuated holotoxin.
A new compensation strategy for an AC contactor under voltage-sag events

This paper aims at researching the effects of voltage-sag events upon AC electromagnetic contactor (abbreviated as AC contactor) and developing a compensation strategy based on feedback control approach. An AC contactor model is first analyzed when sags event is ensured occurrence as well as a novel voltage compensation strategy is designed for timely offsetting the coil voltage; therefore, the critical equipment in continuous process industries are safely protected and prevents the loss caused by downtime. A dynamic performance evaluation was conducted on governing numerical model of an AC contactor for analyzing the system performance when the proposed compensation strategy is introduced. The simulation results clearly depicted that contactors are critical component as it is unable to ride through 20% sag and longer than 48 milliseconds. The effectiveness and feasibility of the proposed coil voltage compensation strategy during voltage sag events occur is validated by using simulation approach. Moreover, the shading rings have the effect of the contactor's transient performance when voltage sags event occur is studied and discussed as well.
Imaging sonar-aided navigation for autonomous underwater harbor surveillance

In this paper we address the problem of drift-free navigation for underwater vehicles performing harbor surveillance and ship hull inspection. Maintaining accurate localization for the duration of a mission is important for a variety of tasks, such as planning the vehicle trajectory and ensuring coverage of the area to be inspected. Our approach only uses onboard sensors in a simultaneous localization and mapping setting and removes the need for any external infrastructure like acoustic beacons. We extract dense features from a forward-looking imaging sonar and apply pair-wise registration between sonar frames. The registrations are combined with onboard velocity, attitude and acceleration sensors to obtain an improved estimate of the vehicle trajectory. We show results from several experiments that demonstrate drift-free navigation in various underwater environments.
Labeling dynamic XML trees

We present algorithms to label the nodes of an XML tree which is subject to insertions and deletions of nodes. The labeling is done such that (1) we label each node immediately when it is inserted and this label remains unchanged, and (2) from a pair of labels alone, we can decide whether one node is an ancestor of the other. This problem arises in the context of XML databases that support queries on the structure of the documents as well us on the changes made to the documents over time. We prove that our algorithms assign the shortest possible labels (up to a constant factor) which satisfy these requirements.We also consider the same problem when "clues" that provide guarantees on possible future insertions are given together with newly inserted nodes. Such clues can be derived from the DTD or from statistics on similar XML trees. We present algorithms that use the clues to assign shorter labels. We also prove that the length of our labels is close to the minimum possible.
Alcohol marketing in televised English professional football: a frequency analysis

AIMS The aim of the study was to explore the frequency of alcohol marketing (both formal commercials and otherwise) in televised top-class English professional football matches. METHODS A purposive sample of six broadcasts (total = 1101 min) of televised top-class English club football matches were identified and recorded in full. A customized coding framework was used to identify and categorize all verbal and visual alcohol references in non-commercial broadcasting. The number and the duration of all formal alcohol commercials were also noted. RESULTS A mean of 111 visual references and 2 verbal references to alcohol per hour of broadcast were identified. Nearly all visual references were to beer products and were primarily simple logos or branding. The majority of verbal alcohol references were related to title-sponsorship of competitions. A total of 17 formal alcohol commercials were identified, accounting for <1% of total broadcast time. CONCLUSION Visual alcohol references in televised top-class English football matches are common with an average of nearly two per minute. Verbal references are rare and formal alcohol commercials account for <1% of broadcast time. Restriction of all alcohol sports sponsorship, as seen for tobacco, may be justified.
Frequency-dependent auditory space representation in the human planum temporale

Functional magnetic resonance imaging (fMRI) findings suggest that a part of the planum temporale (PT) is involved in representing spatial properties of acoustic information. Here, we tested whether this representation of space is frequency-dependent or generalizes across spectral content, as required from high order sensory representations. Using sounds with two different spectral content and two spatial locations in individually tailored virtual acoustic environment, we compared three conditions in a sparse-fMRI experiment: Single Location, in which two sounds were both presented from one location; Fixed Mapping, in which there was one-to-one mapping between two sounds and two locations; and Mixed Mapping, in which the two sounds were equally likely to appear at either one of the two locations. We surmised that only neurons tuned to both location and frequency should be differentially adapted by the Mixed and Fixed mappings. Replicating our previous findings, we found adaptation to spatial location in the PT. Importantly, activation was higher for Mixed Mapping than for Fixed Mapping blocks, even though the two sounds and the two locations appeared equally in both conditions. These results show that spatially tuned neurons in the human PT are not invariant to the spectral content of sounds.
Prognostic significance of microvascular obstruction by magnetic resonance imaging in patients with acute myocardial infarction.

BACKGROUND The extent of microvascular obstruction during acute coronary occlusion may determine the eventual magnitude of myocardial damage and thus, patient prognosis after infarction. By contrast-enhanced MRI, regions of profound microvascular obstruction at the infarct core are hypoenhanced and correspond to greater myocardial damage acutely. We investigated whether profound microvascular obstruction after infarction predicts 2-year cardiovascular morbidity and mortality. METHODS AND RESULTS Forty-four patients underwent MRI 10 +/- 6 days after infarction. Microvascular obstruction was defined as hypoenhancement seen 1 to 2 minutes after contrast injection. Infarct size was assessed as percent left ventricular mass hyperenhanced 5 to 10 minutes after contrast. Patients were followed clinically for 16 +/- 5 months. Seventeen patients returned 6 months after infarction for repeat MRI. Patients with microvascular obstruction (n = 11) had more cardiovascular events than those without (45% versus 9%; P=.016). In fact, microvascular status predicted occurrence of cardiovascular complications (chi2 = 6.46, P<.01). The risk of adverse events increased with infarct extent (30%, 43%, and 71% for small [n = 10], midsized [n = 14], and large [n = 14] infarcts, P<.05). Even after infarct size was controlled for, the presence of microvascular obstruction remained a prognostic marker of postinfarction complications (chi2 = 5.17, P<.05). Among those returning for follow-up imaging, the presence of microvascular obstruction was associated with fibrous scar formation (chi2 = 10.0, P<.01) and left ventricular remodeling (P<.05). CONCLUSIONS After infarction, MRI-determined microvascular obstruction predicts more frequent cardiovascular complications. In addition, infarct size determined by MRI also relates directly to long-term prognosis in patients with acute myocardial infarction. Moreover, microvascular status remains a strong prognostic marker even after control for infarct size.
Brn3a and Islet1 Act Epistatically to Regulate the Gene Expression Program of Sensory Differentiation

The combinatorial expression of transcription factors frequently marks cellular identity in the nervous system, yet how these factors interact to determine specific neuronal phenotypes is not well understood. Sensory neurons of the trigeminal ganglion (TG) and dorsal root ganglia (DRG) coexpress the homeodomain transcription factors Brn3a and Islet1, and past work has revealed partially overlapping programs of gene expression downstream of these factors. Here we examine sensory development in Brn3a/Islet1 double knock-out (DKO) mice. Sensory neurogenesis and the formation of the TG and DRG occur in DKO embryos, but the DRG are dorsally displaced, and the peripheral projections of the ganglia are markedly disturbed. Sensory neurons in DKO embryos show a profound loss of all early markers of sensory subtypes, including the Ntrk neurotrophin receptors, and the runt-family transcription factors Runx1 and Runx3. Examination of global gene expression in the E12.5 DRG of single and double mutant embryos shows that Brn3a and Islet1 are together required for nearly all aspects of sensory-specific gene expression, including several newly identified sensory markers. On a majority of targets, Brn3a and Islet1 exhibit negative epistasis, in which the effects of the individual knock-out alleles are less than additive in the DKO. Smaller subsets of targets exhibit positive epistasis, or are regulated exclusively by one factor. Brn3a/Islet1 double mutants also fail to developmentally repress neurogenic bHLH genes, and in vivo chromatin immunoprecipitation shows that Islet1 binds to a known Brn3a-regulated enhancer in the neurod4 gene, suggesting a mechanism of interaction between these genes.
The Noisy Channel Model for Unsupervised Word Sense Disambiguation

Abstract We introduce a generative probabilistic model, the noisy channel model, for unsupervised word sense disambiguation. In our model, each context C is modeled as a distinct channel through which the speaker intends to transmit a particular meaning S using a possibly ambiguous word W. To reconstruct the intended meaning the hearer uses the distribution of possible meanings in the given context P(S|C) and possible words that can express each meaning P(W|S). We assume P(W|S) is independent of the context and estimate it using WordNet sense frequencies. The main problem of unsupervised WSD is estimating context-dependent P(S|C) without access to any sense-tagged text. We show one way to solve this problem using a statistical language model based on large amounts of untagged text. Our model uses coarse-grained semantic classes for S internally and we explore the effect of using different levels of granularity on WSD performance. The system outputs fine-grained senses for evaluation, and its performance on noun disambiguation is better than most previously reported unsupervised systems and close to the best supervised systems.
Protein Kinase A Activation Enhances β-Catenin Transcriptional Activity through Nuclear Localization to PML Bodies

The Protein Kinase A (PKA) and Wnt signaling cascades are fundamental pathways involved in cellular development and maintenance. In the osteoblast lineage, these pathways have been demonstrated functionally to be essential for the production of mineralized bone. Evidence for PKA-Wnt crosstalk has been reported both during tumorigenesis and during organogenesis, and the nature of the interaction is thought to rely on tissue and cell context. In this manuscript, we analyzed bone tumors arising from mice with activated PKA caused by mutation of the PKA regulatory subunit Prkar1a. In primary cells from these tumors, we observed relocalization of β-catenin to intranuclear punctuate structures, which were identified as PML bodies. Cellular redistribution of β-catenin could be recapitulated by pharmacologic activation of PKA. Using 3T3-E1 pre-osteoblasts as a model system, we found that PKA phosphorylation sites on β-catenin were required for nuclear re-localization. Further, β-catenin's transport to the nucleus was accompanied by an increase in canonical Wnt-dependent transcription, which also required the PKA sites. PKA-Wnt crosstalk in the cells was bi-directional, including enhanced interactions between β-catenin and the cAMP-responsive element binding protein (CREB) and transcriptional crosstalk between the Wnt and PKA signaling pathways. Increases in canonical Wnt/β-catenin signaling were associated with a decrease in the activity of the non-canonical Wnt/Ror2 pathway, which has been shown to antagonize canonical Wnt signaling. Taken together, this study provides a new understanding of the complex regulation of the subcellular distribution of β-catenin and its differential protein-protein interaction that can be modulated by PKA signaling.
Fungal Community Analysis by Large-Scale Sequencing of Environmental Samples

ABSTRACT Fungi are an important and diverse component of soil communities, but these communities have proven difficult to study in conventional biotic surveys. We evaluated soil fungal diversity at two sites in a temperate forest using direct isolation of small-subunit and internal transcribed spacer (ITS) rRNA genes by PCR and high-throughput sequencing of cloned fragments. We identified 412 sequence types from 863 fungal ITS sequences, as well as 112 ITS sequences from other eukaryotic microorganisms. Equal proportions of Basidiomycota and Ascomycota sequences were present in both the ITS and small-subunit libraries, while members of other fungal phyla were recovered at much lower frequencies. Many sequences closely matched sequences from mycorrhizal, plant-pathogenic, and saprophytic fungi. Compositional differences were observed among samples from different soil depths, with mycorrhizal species predominating deeper in the soil profile and saprophytic species predominating in the litter layer. Richness was consistently lowest in the deepest soil horizon samples. Comparable levels of fungal richness have been observed following traditional specimen-based collecting and culturing surveys, but only after much more extensive sampling. The high rate at which new sequence types were recovered even after sampling 863 fungal ITS sequences and the dominance of fungi in our libraries relative to other eukaryotes suggest that the abundance and diversity of fungi in forest soils may be much higher than previously hypothesized.
Efficacy of the dual PI3K and mTOR inhibitor NVP-BEZ235 in combination with nilotinib against BCR-ABL-positive leukemia cells involves the ABL kinase domain mutation

Imatinib, an ABL tyrosine kinase inhibitor (TKI), has shown clinical efficacy against chronic myeloid leukemia (CML). However, a substantial number of patients develop resistance to imatinib treatment due to the emergence of clones carrying mutations in the protein BCR-ABL. The phosphoinositide 3 kinase (PI3K)/Akt/mammalian target of rapamycin (mTOR) pathway regulates various processes, including cell proliferation, cell survival, and antiapoptosis activity. In this study, we investigated the efficacy of NVP-BEZ235, a dual PI3K and mTOR inhibitor, using BCR-ABL-positive cell lines. Treatment with NVP-BEZ235 for 48 h inhibited cell growth and induced apoptosis. The phosphorylation of the AKT kinase, eukaryotic initiation factor 4-binding protein 1 (4E-BP1), and p70 S6 kinase were decreased after NVP-BEZ235 treatment. The combination of NVP-BEZ235 with a BCR-ABL kinase inhibitor, imatinib, or nilotinib, induced a more pronounced colony growth inhibition, whereas the combination of NVP-BEZ235 and nilotinib was more effective in inducing apoptosis and reducing the phosphorylation of AKT, 4E-BP1, and S6 kinase. NVP-BEZ235 in combination with nilotinib also inhibited tumor growth in a xenograft model and inhibited the growth of primary T315I mutant cells and ponatinib-resistant cells. Taken together, these results suggest that administration of the dual PI3K and mTOR inhibitor NVP-BEZ235 may be an effective strategy against BCR-ABL mutant cells and may enhance the cytotoxic effects of nilotinib in ABL TKI-resistant BCR-ABL mutant cells.
Long-term optical/IR variability of the Be/X-ray binary LS V +44 17/RX J0440.9+4431

School of Physics and Astronomy, The University, Southampton, SO17 1BJ, UKReceived / AcceptedAbstract.We present the ﬁrst long-term study of the optical counterpart to the X-ray pulsar RX J0440.9+4431/LS V +44 17. The dataconsist of optical spectroscopic and infrared photometric observations taken during the period 1995-2005. The infrared ob-servations are the ﬁrst published for this source. The resul ts of our photometric and spectroscopic analysis show that RXJ0440.9+4431/LS V +44 17 contains a moderately reddened, E(B-V)=0.65±0.05, B0.2V star located at about 3.3 kpc. The Hαline consistently shows a double-peak proﬁle varying from symmetric shape to completely distorted on one side (V/R phases). A correlation between the equivalent width of the Hα line and the infrared magnitudes is seen: as the EW(Hα) decreases the IRmagnitudes become fainter. This long-term optical/IR variability is attributed to structural changes in the Be star’s circumstellardisc. The observations include a recent decline in the circumstellar disc and subsequent recovery. We have witnessed the cessa-tion of a global oscillation due to the decline of the circumstellar disc. If the present disc growth rate continues we predict theonset of another episode of V/R variability by the end of 2006. We have investigated the typical time scales for disc variabilityof various Be/X-ray binaries and found a correlation with the orbital period. This correlation is hard to establish due to the diﬃ-culty in deﬁning the exact duration of the various activity s tates, but it is seen both in the duration of the disc growth/dissipationphase and the value of the Hα equivalent width prior to the appearance of asymmetric proﬁ les. These relationships providefurther evidence for the interaction of the neutron star with the circumstellar disc of the Be star’s companion and conﬁr ms theneed of a fully developed disc for the V/R variability to be observed.Key words. stars: individual: RX J0440.9+4431, LS V +44 17 – X-rays: binaries – stars: neutron – stars: binaries cl ose –stars:emission line, Be
Expression of Interleukin-6 in the Cornea in Response to Infection with Different Strains of Pseudomonas aeruginosa

ABSTRACT Strains of Pseudomonas aeruginosa causing keratitis can be either cytotoxic (6206) or invasive (6294), while a strain (Paer1) causing contact lens-induced acute red eye has been shown to be neither. In situ hybridization was used to examine the location and identity of cells expressing interleukin-6 (IL-6) mRNA in the murine cornea and changes in expression in response to infection with different strains of P. aeruginosa. The number of IL-6-positive cells was determined by image analysis. IL-6 protein levels were measured by an enzyme-linked immunosorbent assay. BALB/c mice were challenged by use of the wounded-cornea model with P. aeruginosa 6294, 6206, or Paer1 (2 × 106 CFU). At time intervals up to 24 h, postchallenge corneal tissue was probed for IL-6 mRNA. IL-6 mRNA expression was rapidly elevated in the epithelium in response to strains 6294 and 6206. At the conclusion of the experiments, infiltrating inflammatory cells also stained positively for IL-6 mRNA. In contrast, corneas challenged with strain Paer1 showed significant upregulation of IL-6 mRNA only at 4 h postchallenge. Three distinct patterns of IL-6 mRNA expression in the mouse cornea occur in response to these three ocular isolates ofP. aeruginosa. The data obtained for mRNA expression in the cornea for all three strains of P. aeruginosa correlated well with IL-6 protein analysis of whole-eye homogenates. Differences in the cytokine responses to these strains correlate with differences in the pathology associated with each strain and may offer an opportunity to develop strategies for the improved management of ocular inflammation.