Miracle-dz/UniFAR-FTUs huggingface dataset:
Dependency Parsing with LSTMs: An Empirical Evaluation

We propose a transition-based dependency parser using Recurrent Neural Networks with Long Short-Term Memory (LSTM) units. This extends the feedforward neural network parser of Chen and Manning (2014) and enables modelling of entire sequences of shift/reduce transition decisions. On the Google Web Treebank, our LSTM parser is competitive with the best feedforward parser on overall accuracy and notably achieves more than 3% improvement for long-range dependencies, which has proved difficult for previous transition-based parsers due to error propagation and limited context information. Our findings additionally suggest that dropout regularisation on the embedding layer is crucial to improve the LSTM's generalisation.
Learning ReLUs via Gradient Descent

In this paper we study the problem of learning Rectified Linear Units (ReLUs) which are functions of the form $max(0, )$ with $w$ denoting the weight vector. We study this problem in the high-dimensional regime where the number of observations are fewer than the dimension of the weight vector. We assume that the weight vector belongs to some closed set (convex or nonconvex) which captures known side-information about its structure. We focus on the realizable model where the inputs are chosen i.i. d. ~from a Gaussian distribution and the labels are generated according to a planted weight vector. We show that projected gradient descent, when initialization at 0, converges at a linear rate to the planted model with a number of samples that is optimal up to numerical constants. Our results on the dynamics of convergence of these very shallow neural nets may provide some insights towards understanding the dynamics of deeper architectures.
Symptomatology of patients referred for mandibular dysfunction: evaluation with the aid of a questionnaire.

AbstractAn accumulated list of patients, referred for treatment of mandibular dysfunction, received a self-administered questionnaire. The aim was to get a picture of the type of symptoms, their location, frequency, severity, and the subjective need for treatment. The answers would be the basis for administration and planning of the treatment.A total of 331 persons (76%) answered the questionnaire; 31 percent of the respondents were men and 69 percent female, ages 11 to 84. Half of the sample was found in the 25 to 44 age group.The two most common symptoms were TMJ sounds and headache, found in about 50 percent of the respondents. The most annoying symptoms were pain in the face and jaws and headache. Headache and fatigue in the jaws were significantly more often reported by the women than by the men.Ninety percent of those who answered the questionnaire considered themselves in need of treatment. These patients had had their symptoms for several years, indicating that most mandibular pain dysfunction pat.
Investment into Defensive Traits by Anuran Prey (Lithobates pipiens) Is Mediated by the Starvation-Predation Risk Trade-Off

Prey can invest in a variety of defensive traits when balancing risk of predation against that of starvation. What remains unknown is the relative costs of different defensive traits and how prey reconcile investment into these traits when energetically limited. We tested the simple allocation model of prey defense, which predicts an additive effect of increasing predation risk and resource availability, resulting in the full deployment of defensive traits under conditions of high risk and resource saturation. We collected morphometric, developmental, and behavioural data in an experiment using dragonfly larvae (predator) and Northern leopard frog tadpoles (prey) subject to variable levels of food availability and predation risk. Larvae exposed to food restriction showed limited response to predation risk; larvae at food saturation altered behaviour, development, and growth in response to predation risk. Responses to risk varied through time, suggesting ontogeny may affect the deployment of particular defensive traits. The observed negative correlation between body size and activity level for food-restricted prey – and the absence of a similar response among adequately-fed prey – suggests that a trade-off exists between behavioural and growth responses when energy budgets are limited. Our research is the first to demonstrate how investment into these defensive traits is mediated along gradients of both predation risk and resource availability over time. The interactions we demonstrate between resource availability and risk level on deployment of inducible defenses provide evidence that both internal condition and extrinsic risk factors play a critical role in the production of inducible defenses over time.
Triangles in space or building (and analyzing) castles in the air

We show that the total combinatorial complexity of all non-convex cells in an arrangement ofn (possibly intersecting) triangles in 3-space isO(n7/3 logn) and that this bound is almost tight in the worst case. Our bound significantly improves a previous nearly cubic bound of Pach and Sharir. We also present a (nearly) worst-case optimal randomized algorithm for calculating a single cell of the arrangement and an alternative less efficient, but still subcubic algorithm for calculating all non-convex cells, analyze some special cases of the problem where improved bounds (and faster algorithms) can be obtained, and describe applications of our results to translational motion planning for polyhedra in 3-space.
Retrieval and Monitoring Processes during Visual Working Memory: An ERP Study of the Benefit of Visual Semantics

In this study, we examined electrophysiological indices of episodic remembering whilst participants recalled novel shapes, with and without semantic content, within a visual working memory paradigm. The components of interest were the parietal episodic (PE; 400–800 ms) and late posterior negativity (LPN; 500–900 ms), as these have previously been identified as reliable markers of recollection and post-retrieval monitoring, respectively. Fifteen young adults completed a visual matrix patterns task, assessing memory for low and high semantic visual representations. Matrices with either low semantic or high semantic content (containing familiar visual forms) were briefly presented to participants for study (1500 ms), followed by a retention interval (6000 ms) and finally a same/different recognition phase. The event-related potentials of interest were tracked from the onset of the recognition test stimuli. Analyses revealed equivalent amplitude for the earlier PE effect for the processing of both low and high semantic stimulus types. However, the LPN was more negative-going for the processing of the low semantic stimuli. These data are discussed in terms of relatively ‘pure’ and complete retrieval of high semantic items, where support can readily be recruited from semantic memory. However, for the low semantic items additional executive resources, as indexed by the LPN, are recruited when memory monitoring and uncertainty exist in order to recall previously studied items more effectively.
Fully Dynamic All Pairs All Shortest Paths

We consider the all pairs all shortest paths (APASP) problem, which maintains all of the multiple shortest paths for every vertex pair in a directed graph G=(V,E) with a positive real weight on each edge. We present a fully dynamic algorithm for this problem in which an update supports either weight increases or weight decreases on a subset of edges incident to a vertex. Our algorithm runs in amortized O(\vstar^2 \cdot \log^3 n) time per update, where n = |V|, and \vstar bounds the number of edges that lie on shortest paths through any single vertex. Our APASP algorithm leads to the same amortized bound for the fully dynamic computation of betweenness centrality (BC), which is a parameter widely used in the analysis of large complex networks. Our method is a generalization and a variant of the fully dynamic algorithm of Demetrescu and Italiano [DI04] for unique shortest path, and it builds on very recent work on decremental APASP [NPR14]. Our algorithm matches the fully dynamic amortized bound in [DI04] for graphs with unique shortest paths, though our method, and especially its analysis, are different.
Histology of the extraembryonic membranes of an oviparous snake: towards a reconstruction of basal squamate patterns.

An understanding of the evolutionary morphology of extraembryonic membranes in reptiles requires information about oviparous as well as viviparous species. We are studying histology and ultrastructure of the extraembryonic membranes of snakes to clarify the evolutionary history of reptilian fetal membranes, including determination of basal (ancestral) ophidian and squamate patterns. Microscopic anatomy of the membranes of oviparous corn snakes (Elaphe guttata) was examined using light and electron microscopy. At mid-development the inner surface of the eggshell is lined by two extraembryonic membranes, the chorioallantois and the omphalallantoic membrane. The chorioallantois consists of a bilayered cuboidal epithelium that overlies the allantoic blood vessels. During development, allantoic capillaries become more abundant, and the chorionic epithelium thins, decreasing the diffusion distance for respiratory gas exchange. The abembryonic pole of the egg is delimited by a bilaminar omphalopleure and isolated yolk mass, the latter of which is lined on its inner face by the allantois. The isolated yolk mass regresses developmentally, and patches of yolk droplets become isolated and surrounded by allantoic blood vessels. By late development, the abembryonic hemisphere has been fully vascularized by allantoic vessels, forming a "secondary chorioallantois. " With regard to its extraembryonic membranes, Elaphe gutatta is similar to viviparous snakes. However, this species exhibits features that have not previously been reported among squamates, perhaps reflecting its oviparous reproductive habits. Morphological evidence for the uptake of eggshell material by epithelia of the chorion and omphalopleure suggests that the potential for absorption by extraembryonic membranes predates the origin of viviparity.
When Imagining Yourself in Pain, Visual Perspective Matters: The Neural and Behavioral Correlates of Simulated Sensory Experiences

Via mental simulation, imagined events faithfully reproduce the neural and behavioral activities that accompany their actual occurrence. However, little is known about how fundamental characteristics of mental imagery—notably perspectives of self—shape neurocognitive processes. To address this issue, we used fMRI to explore the impact that vantage point exerts on the neural and behavioral correlates of imaginary sensory experiences (i.e., pain). Participants imagined painful scenarios from three distinct visual perspectives: first-person self (1PS), third-person self (3PS), and third-person other (3PO). Corroborating increased ratings of pain and embodiment, 1PS (cf. 3PS) simulations elicited greater activity in the right anterior insula, a brain area that supports interoceptive and emotional awareness. Additionally, 1PS simulations evoked greater activity in brain areas associated with visual imagery and the sense of body ownership. Interestingly, no differences were observed between 3PS and 3PO imagery. Taken together, these findings reveal the neural and behavioral correlates of visual perspective during mental simulation.
Effect of drilling fluid on concrete-soil/rock interface shear strength in seawater drilling environment

Abstract In this article, the results of an experimental study on the effect of drilling fluid on concrete-soil/rock interface shear strength in the seawater drilling environment are presented. The series of direct shear tests using a purpose-designed shear box with seawater were performed considering different types of drilling fluid and base material, various normal stress levels at the interface, and filtration times. The results indicated that bentonite drilling fluid significantly decreased the concrete-soil/rock interface shear strength while a negligibly small effect was observed for polymer drilling fluid, confirming the findings from the previous studies. It was also observed that the degree of interface shear strength reduction when using bentonite drilling fluid varied with the type of base material as well as the level of normal stress at the interface. The results also confirmed that the groundwater chemistry does not alter governing mechanism of the drilling fluids and the concrete-soil/rock interface interaction and that significant benefit can also be expected when using polymer-based drilling fluid over bentonite in terms of the side resistance of a drilled shaft in seawater drilling environment as well.
Automatic Summarization of Conversational Multi-Party Speech

Document summarization has proven to be a desirable component in many information management systems, complementing core information retrieval and browsing functionalities. The use of document summarization techniques is especially important with speech documents such as meeting transcriptions, since they are particularly difficult to navigate. As opposed to their written counterparts, spoken documents lack structural elements like title, headers, and paragraphs that can ease the task of the information seeker. Document summarization can reduce the overhead of navigating large collections of speech data. For example, summarization techniques can be used to extract or highlight relevant passages in a full transcription. Alternatively, similar techniques might be used to generate short text substitutes, or abstracts, that capture the “aboutness” of the meeting, while discarding disfluencies and other unimportant elements. In my thesis work, I address the problem of creating abstractive summaries of meetings, a task that has to date only received limited attention. Abstractive summarization differs from extraction in that it does not simply concatenate input utterances, but alters the extracted material in order to produce fluent and concise summaries. Speech summarization faces many challenges not found in texts, in particular high word error rates (WER on this data is 34.8%), absence of punctuation, and sometimes lack grammaticality and coherent ordering. My approach to speech summarization divides the problem into two subtasks that are admittedly quite independent: content selection, i.e. identifying a set of salient utterances that is a practical substitute to the entire meeting transcription; utterance revision, i.e. correcting the various non-fluencies typical of conversational speech, and operating below the sentence level to further remove unimportant lexical material.
Oligosaccharide analysis in urine by maldi-tof mass spectrometry for the diagnosis of lysosomal storage diseases.

BACKGROUND There are 45 known genetic diseases that impair the lysosomal degradation of macromolecules. The loss of a single lysosomal hydrolase leads to the accumulation of its undegraded substrates in tissues and increases of related glycoconjugates in urine, some of which can be detected by screening of free oligosaccharides (FOS) in urine. Traditional 1-dimensional TLC for urine oligosaccharide analysis has limited analytical specificity and sensitivity. We developed fast and robust urinary FOS and glycoaminoacid analyses by MALDI-time-of-flight/time-of-flight (MALDI-TOF/TOF) mass spectrometry for the diagnosis of oligosaccharidoses and other lysosomal storage diseases. METHODS The FOS in urine equivalent to 0.09 mg creatinine were purified through sequential passage over a Sep-Pak C18 column and a carbograph column and were then permethylated. MALDI-TOF/TOF was used to analyze the permethylated FOS. We studied urine samples from individuals in 7 different age groups ranging from 0-1 months to ≥ 17 years as well as urine from known patients with different lysosomal storage diseases. RESULTS We identified diagnostic urinary FOS patterns for α-mannosidosis, galactosialidosis, mucolipidosis type II/III, sialidosis, α-fucosidosis, aspartylglucosaminuria (AGU), Pompe disease, Gaucher disease, and GM1 and GM2 gangliosidosis. Interestingly, the increase in urinary FOS characteristic of lysosomal storage diseases relative to normal FOS appeared to correlate with the disease severity. CONCLUSIONS The analysis of urinary FOS by MALDI-TOF/TOF is a powerful tool for first-tier screening of oligosaccharidoses and lysosomal storage diseases.
comK Prophage Junction Fragments as Markers for Listeria monocytogenes Genotypes Unique to Individual Meat and Poultry Processing Plants and a Model for Rapid Niche-Specific Adaptation, Biofilm Formation, and Persistence

ABSTRACT Different strains of Listeria monocytogenes are well known to persist in individual food processing plants and to contaminate foods for many years; however, the specific genotypic and phenotypic mechanisms responsible for persistence of these unique strains remain largely unknown. Based on sequences in comK prophage junction fragments, different strains of epidemic clones (ECs), which included ECII, ECIII, and ECV, were identified and shown to be specific to individual meat and poultry processing plants. The comK prophage-containing strains showed significantly higher cell densities after incubation at 30°C for 48 h on meat and poultry food-conditioning films than did strains lacking the comK prophage (P < 0.05). Overall, the type of strain, the type of conditioning film, and the interaction between the two were all highly significant (P < 0.001). Recombination analysis indicated that the comK prophage junction fragments in these strains had evolved due to extensive recombination. Based on the results of the present study, we propose a novel model in which the concept of defective comK prophage was replaced with the rapid adaptation island (RAI). Genes within the RAI were recharacterized as “adaptons,” as these genes may allow L. monocytogenes to rapidly adapt to different food processing facilities and foods. If confirmed, the model presented would help explain Listeria's rapid niche adaptation, biofilm formation, persistence, and subsequent transmission to foods. Also, comK prophage junction fragment sequences may permit accurate tracking of persistent strains back to and within individual food processing operations and thus allow the design of more effective intervention strategies to reduce contamination and enhance food safety.
Pramipexole in the treatment of restless legs syndrome: a follow‐up study

The restless legs syndrome (RLS) is a condition characterized by unpleasant limb sensations occurring at rest and associated with an irresistible urge to move. Several treatments are used to treat RLS including benzodiazepines, opioids, dopaminergic agents, clonidine and anticonvulsant drugs such as carbamazepine and gabapentine. Dopaminergic agents are now considered the treatment of choice for RLS. Levodopa is effective in treating RLS; however, several patients treated with levodopa at bedtime developed morning or late afternoon restlessness. Recently, more attention has been paid to dopamine receptor agonists. Ergoline derivatives, bromocriptine and pergolide were found effective, but require concomitant administration of domperidone, a peripheral dopamine antagonist. In a recent study, we studied the efficacy and innocuity of pramipexole, a new dopamine agonist with a higher affinity for the D3 receptor subtype of the D2 family, in a double‐blind, placebo‐controlled, randomized trial. Pramipexole had major effects on RLS symptoms without severe side‐effects. The present study aimed to assess the long‐term efficacy of pramipexole. Seven patients were treated with the drug for a mean follow‐up duration of 7.8 months. Treatment was started at a dosage of 0.25 mg, and progressively increased until the optimal therapeutic effect was obtained. Home questionnaires were completed for 7 consecutive days, after one month and after a mean of 7.8 months of treatment with pramipexole, assessing leg restlessness during the daytime, in the evening, at bedtime and during the night. There was no evidence of a decrease in the therapeutic effect of pramipexole in these patients, even 7.8 months after the initiation of treatment. The optimal dosage was 0.25 mg for one patient, 0.5 mg for five patients and 0.75 mg for one patient. While there was a progressive increase in severity of leg restlessness from daytime to nighttime before treatment, a suppression of leg restlessness was observed throughout the 24 h with a single dose of pramipexole at bedtime. The remarkable efficacy of pramipexole raises the possibility that the D3 receptors of the mesolimbic system may be more specifically involved in the physiopathology of RLS.
Neogene-Quaternary onshore record in the lower Ebro river incised palaeovalley (Ebro margin, Catalan Coastal Range, NE Iberia)

The lower Ebro is a bedrock-alluvial mixed incised valley with a persistent degradational stacking architecture developed from latest Serravallian(? ) to Holocene. This degradational pattern was probably controlled by isostatic rebound in NE Iberia and punctuated by major relative sea level changes that temporally accentuated or attenuated the palaeovalley entrenchment and sediment retention. Six allostratigraphic units in the palaeovalley constitute the onshore record of its evolution and the opening and connection of the Ebro Basin with the Mediterranean. This paper deals with the analysis and reinterpretation of these units in order to precise the sequence of events that took place on the onshore part of the Catalan continental margin during the Ebro River drainage entrenchment. Plausible chronology and palaeogeographic evolution of the Neogene-Quaternary drainage incision in the lower Ebro are also proposed. The early evolutionary stages of the incised palaeovalley (Latest Serravallian? -Tortonian-Early Messinian, from 11.63–9? to near 5.6Ma) were dominated by entrenchment and intense sediment transfer from the onshore to the offshore zones (erosion surface S2). These processes were only punctuated by the sedimentation of the alluvial palaeovalley unit M2 (late Messinian). The polygenetic onshore erosion surfaces S2 and S3 are linked here with the onshore erosive processes that fed the sedimentation of the terrigenous shelf-slope system of the offshore Castellon group and considered coeval with the offshore Messinian erosion surfaces (reflectors M and m). During a further evolutionary stage (Pliocene to Early Pleistocene from 5.3 to approximately 2Ma) the Early Pliocene major Mediterranean reflooding caused some sediment retention in the incised palaeovalley (sedimentation of unit P) but sediment transfer into the offshore remained very effective. In the last evolutionary stage (Early Pleistocene-Holocene, from 2Ma to present) the palaeovalley became again mainly degradational (generation of erosion surfaces S4 to S6 and sedimentation of stepped alluvial terraces Q1-2 to Q4). The onshore stratigraphic record, including the allostratigraphic units P and Q1-2 to Q4 and the related bounding surfaces S3 to S6, is correlated with the sedimentation of the terrigenous shelf-slope system of the offshore Ebro group.