Miracle-dz/UniFAR-FTUs huggingface dataset:
Peripheral circulation of the prion infectious agent in transgenic mice expressing the ovine prion protein gene in neurons only.

BACKGROUND For prion diseases, even if a large body of evidence indicates that both the lymphoreticular system (LRS) and peripheral nerves are involved in scrapie neuroinvasion, the processes by which prions invade the central nervous system are only partially understood. METHODS Transgenic Tg(OvPrP4) mice, which express the ovine prion protein (PrP) gene under the rat neuron-specific enolase promoter on a knockout background, were used to study prion extracerebral circulation after scrapie prions were inoculated via the intracerebral (ic) and the intraperitoneal (ip) route. RESULTS Surprisingly, PrP(Sc) was detected in the spleens of mice inoculated ic with prions. Moreover, the absence of the ovine PrP(C) in nonneural tissue at the periphery did not stop neuroinvasion after ip challenge. Additionally, pilot studies performed in Tg(OvPrP4) mice that had undergone splenectomy before ic prion inoculation showed that the time course of the disease is delayed. CONCLUSIONS Given that these mice express the ovine PrP gene in neuronal cells but not in nonnervous tissue, our results suggest that PrP(C) expressed by cells of the LRS are not necessary for neuroinvasion or for their ability to accumulate PrP(Sc) and emphasize the importance of extracerebral circulation of PrP(C) or PrP(Sc) for the development of the disease.
Gastric Fluid and Heat Stress Response of Listeria monocytogenes Inoculated on Frankfurters Formulated with 10%, 20%, and 30% Fat Content

This study evaluated the effects of frankfurter fat content on Listeria monocytogenes resistance to heat stress and gastric fluid, and the Caco-2 cell invasion efficiency of the pathogen. A 10-strain mixture of L. monocytogenes was inoculated on frankfurters formulated with 10%, 20%, and 30% fat content (10%: F10, 20%: F20, 30%: F30) and stored at 10℃ for 30 d. The samples were analyzed for L. monocytogenes resistance to heat stress and a simulated gastric fluid challenge. The total bacteria and L. monocytogenes survival rates were measured on tryptic soy agar plus 0.6% yeast extract and Palcam agar, respectively. L. monocytogenes colonies inoculated on F10, F20, and F30 samples were used for a Caco-2 cell invasion assay. In general, no obvious differences were observed between the survival rates of total bacteria and L. monocytogenes grown on different fat contents under heat stress and gastric fluid challenge. However, L. monocytogenes obtained from the F30 samples had a significantly higher Caco-2 cell invasion efficiency than those in the F10 and F20 samples (p<0.05). These results indicate that although high fat content in food may not be related to L. monocytogenes resistance to heat stress and gastric fluid, it may increase the Caco-2 cell invasion efficiency of the pathogen.
Torix group Rickettsia are widespread in Culicoides biting midges (Diptera: Ceratopogonidae), reach high frequency and carry unique genomic features

Summary There is increasing interest in the heritable bacteria of invertebrate vectors of disease as they present novel targets for control initiatives. Previous studies on biting midges (Culicoides spp.), known to transmit several RNA viruses of veterinary importance, have revealed infections with the endosymbiotic bacteria, Wolbachia and Cardinium. However, rickettsial symbionts in these vectors are underexplored. Here, we present the genome of a previously uncharacterized Rickettsia endosymbiont from Culicoides newsteadi (RiCNE). This genome presents unique features potentially associated with host invasion and adaptation, including genes for the complete non‐oxidative phase of the pentose phosphate pathway, and others predicted to mediate lipopolysaccharides and cell wall modification. Screening of 414 Culicoides individuals from 29 Palearctic or Afrotropical species revealed that Rickettsia represent a widespread but previously overlooked association, reaching high frequencies in midge populations and present in 38% of the species tested. Sequence typing clusters the Rickettsia within the Torix group of the genus, a group known to infect several aquatic and hematophagous taxa. FISH analysis indicated the presence of Rickettsia bacteria in ovary tissue, indicating their maternal inheritance. Given the importance of biting midges as vectors, a key area of future research is to establish the impact of this endosymbiont on vector competence.
Protective Effects of Fluoxetine on Decompression Sickness in Mice

Massive bubble formation after diving can lead to decompression sickness (DCS) that can result in central nervous system disorders or even death. Bubbles alter the vascular endothelium and activate blood cells and inflammatory pathways, leading to a systemic pathophysiological process that promotes ischemic damage. Fluoxetine, a well-known antidepressant, is recognized as having anti-inflammatory properties at the systemic level, as well as in the setting of cerebral ischemia. We report a beneficial clinical effect associated with fluoxetine in experimental DCS. 91 mice were subjected to a simulated dive at 90 msw for 45 min before rapid decompression. The experimental group received 50 mg/kg of fluoxetine 18 hours before hyperbaric exposure (n = 46) while controls were not treated (n = 45). Clinical assessment took place over a period of 30 min after surfacing. At the end, blood samples were collected for blood cells counts and cytokine IL-6 detection. There were significantly fewer manifestations of DCS in the fluoxetine group than in the controls (43.5% versus 75.5%, respectively; p = 0.004). Survivors showed a better and significant neurological recovery with fluoxetine. Platelets and red cells were significantly decreased after decompression in controls but not in the treated mice. Fluoxetine reduced circulating IL-6, a relevant marker of systemic inflammation in DCS. We concluded that fluoxetine decreased the incidence of DCS and improved motor recovery, by limiting inflammation processes.
Purification and characterization of two alpha-galactosidases associated with catabolism of guar gum and other alpha-galactosides by Bacteroides ovatus

When Bacteroides ovatus is grown on guar gum, a galactomannan, it produces alpha-galactosidase I which is different from alpha-galactosidase II which it produces when grown on galactose, melibiose, raffinose, or stachyose. We have purified both of these enzymes to apparent homogeneity. Both enzymes appear to be trimers and have similar pH optima (5.9 to 6.4 for alpha-galactosidase I, 6.3 to 6.5 for alpha-galactosidase II). However, alpha-galactosidase I has a pI of 5.6 and a monomeric molecular weight of 85,000, whereas alpha-galactosidase II has a pI of 6.9 and a monomeric molecular weight of 80,500. alpha-Galactosidase I has a lower affinity for melibiose, raffinose, and stachyose (Km values of 20.8, 98.1, and 8.5 mM, respectively) than does alpha-galactosidase II (Km values of 2.3, 5.9, and 0.3 mM, respectively). Neither enzyme was able to remove galactose residues from intact guar gum, but both were capable of removing galactose residues from guar gum which had been degraded into large fragments by mannanase. The increase in specific activity of alpha-galactosidase which was associated with growth on guar gum was due to an increase in the specific activity of enzyme I. Low, constitutive levels of enzyme II also were produced. By contrast, enzyme II was the only alpha-galactosidase that was detectable in bacteria which had been grown on galactose, melibiose, raffinose, or stachyose.
Enabling IoT for In-Home Rehabilitation: Accelerometer Signals Classification Methods for Activity and Movement Recognition

Rehabilitation and elderly monitoring for active aging can benefit from Internet of Things (IoT) capabilities in particular for in-home treatments. In this paper, we consider two functions useful for such treatments: 1) activity recognition (AR) and 2) movement recognition (MR). The former is aimed at detecting if a patient is idle, still, walking, running, going up/down the stairs, or cycling; the latter individuates specific movements often required for physical rehabilitation, such as arm circles, arm presses, arm twist, curls, seaweed, and shoulder rolls. Smartphones are the reference platforms being equipped with an accelerometer sensor and elements of the IoT. The work surveys and compares accelerometer signals classification methods to enable IoT for the aforementioned functions. The considered methods are support vector machines (SVMs), decision trees, and dynamic time warping. A comparison of the methods has been proposed to highlight their performance: all the techniques have good recognition accuracies and, among them, the SVM-based approaches show an accuracy above 90% in the case of AR and above 99% in the case of MR.
Comparison of nitric oxide synthase inhibitors, phospholipase A2 inhibitor and free radical scavengers as attenuators of opioid withdrawal syndrome

Chronic morphine-induced withdrawal syndrome after morphine cessation remains a severe obstacle in the clinical treatment of morphine. Previous studies have shown that nitric oxide synthetase (NOS) inhibitors may have therapeutic potential in morphine withdrawal in humans. The mechanisms that underlie expression of morphine-induced withdrawal syndrome are, however, not yet fully understood. Therefore, this study was designed to determine the mechanism of the expression of morphine-induced withdrawal syndrome in mice. Morphine-dependent mice showed marked body weight loss and several withdrawal signs after naloxone challenge. Pretreatment with a NOS inhibitor, such as Nω-nitro-L-arginine methyl ester (L-NAME) or 7-nitroindazole, but not aminoguanidine, significantly attenuated the expression of morphine-induced withdrawal syndrome. Furthermore, mepacrine (a phospholipase A2 inhibitor) significantly attenuated the morphine-induced withdrawal syndrome in a manner that was different than that with a NOS inhibitor. These results suggest that nNOS and phospholipase A2, which might increase free radicals, play an important role in the expression of morphine-induced withdrawal syndrome. On the contrary, free radical scavengers (including fullerenes, ascorbate-2-phosphate, and DL-&agr;-tocopheryl phosphate) attenuated the expression of the morphine-induced withdrawal syndrome. These results indicate that free radicals play an important role in the expression of physical dependence on morphine, and fullerenes could be a potential clinical tool in the relief of morphine withdrawal syndrome.
OntoQA: Metric-Based Ontology Quality Analysis

As the Semantic Web gains importance for sharing knowledge on the Internet this has lead to the development and publishing of many ontologies in different domains. When trying to reuse existing ontologies into their applications, users are faced with the problem of determining if an ontology is suitable for their needs. In this paper, we introduce OntoQA, an approach that analyzes ontology schemas and their populations (i.e. knowledgebases) and describes them through a well defined set of metrics. These metrics can highlight key characteristics of an ontology schema as well as its population and enable users to make an informed decision quickly. We present an evaluation of several ontologies using these metrics to demonstrate their applicability.
Communal nesting in the usually solitary marsupial, Phascogale tapoatafa

The marsupial brushtailed phascogale Phascogale tapoatafa is a solitary, hollow-dependent, arboreal insectivore that occurs at low densities in open forests and woodlands of Australia. Data gathered from nest box surveys (4 years), and from radio-tracking phascogales to nest sites (3 years) in south-western Australia confirm solitary nesting after dispersal. However, in the winter of a single year, nest box surveys in one study area showed that 56% of individuals were nest sharing. On a neighbouring site, 81 group nests were also recorded among 18 radio-collared individuals. In both areas, groups comprised two to four individuals of any age/sex combination. The same phascogales tended to nest together and in a number of different sites. Nest sharing between females was restricted to territory boundaries and continued after the annual die-off of the males. Nest sharing coincided with prolonged drought conditions and in this year mature phascogales were significantly smaller than normal, i.e. males 25% less in weight, females 12% less. Communal nesting seemed to be a response to thermoregulatory difficulties posed by the three interrelated factors of low body mass, declining temperatures and declining food availability. Nest sharing in this species appeared to be a behavioural indicator of an energetics crisis, there was a population decline during the drought period and a population crash in the following year.
Ecological citizenship: coming out ‘clean’ without turning ‘green’?

Proponents of the cosmopolitan view of ecological citizenship claim that in order to fulfil the moral obligations of global justice, citizens must undergo deep attitude shifts and adopt green civic virtues. To test this empirically, a typology of four major combinations of environmental attitudes and ecological practise is constructed and the extent to which these four citizen types are found in Sweden is assessed using data from nationwide annual surveys. Discovery of a large group of citizens whose practice is green ecological but who exhibit grey environmental attitudes leads to the conclusion that, contrary to the assertions of proponents of the cosmopolitan view, citizens can indeed come out ecologically clean without undergoing deep attitudinal shifts, without turning green.
Drawing clocks and driving cars

AbstractOBJECTIVE: The purpose of the study was to determine whether a new method of scoring the Clock Drawing Test (CDT) is a reliable and valid method for identifying older adults with declining driving competence. DESIGN: Prospective cohort study. SETTING: An outpatient driving evaluation clinic. PARTICIPANTS: One hundred nineteen community-dwelling, active drivers with a valid driver’s license, aged 60 and older referred for driving evaluation. MAIN OUTCOME MEASURES: The CDT and a driving test using a STISIM Drive simulator. RESULTS: The CDT showed a high level of accuracy in predicting driving simulation outcome (area under the receiver-operator curve, 0.90; 95% confidence interval, 0.82 to 0.95). CDT scoring scales were comparable and all correlations between CDT scores and driving performance were negative, implying that as the CDT score decreases, the number of errors increases. Interrater reliability of CDT scores was 0.95. Subjects scoring less than 5 out of 7 points on the CDT made significantly more driving errors, hazardous and in total (P<.001). CONCLUSIONS: The CDT can help establish problems with executive function and indicate the need for a formal driving evaluation. Our CDT scoring scale is a reliable, valid, and time-effective screening tool for identifying elderly drivers in need of further evaluation.
News Values, Media Coverage, and Audience Attention: An Analysis of Direct and Mediated Causal Relationships

This study examined causal relationships among news values, media coverage, and audience attention. News values—deviance and social significance—for 104 news events were measured. Then, media coverage of and audience attention to the events were obtained from Pew Research Center's two data sources. A structural equation model showed a significant effect of news values on the amount of media coverage and also a significant effect of media coverage on audience attention. Further, news values indirectly influenced audience attention, mediated by the media coverage.
Clinicopathological Significance of S100A10 Expression in Lung Adenocarcinomas.

BACKGROUND S100A10, of the S100 protein family, is reported to be involved in cancer cell invasion and metastasis. The aims of the present study were to immunohistochemically examine S100A10 expression in surgically resected lung adenocarcinomas, and evaluate any relationships with clinicopathological parameters and prognosis of patients. MATERIALS AND METHODS S100A10 expression was immunohistochemically studied in 202 consecutive resected lung adenocarcinomas, and its associations with clinicopathological parameters were evaluated. Kaplan-Meier survival analysis and Cox proportional hazards models were used to estimate the effect of S100A10 expression on survival. RESULTS S100A10 expression was detected in 65 of the 202 (32.2%) lung adenocarcinomas, being significantly correlated with poorer differentiation (P =0.015), a higher pathological TNM stage (stages II and III) (P=0.004), more frequent and severe intratumoral vascular invasion (P=0.001), and a poorer prognosis (P=0.030). However, S100A10 expression was not an independent predictor of survival after controlling for clinicopathological factors. CONCLUSIONS The present study reveals that S100A10 is expressed in a subset of lung adenocarcinomas, and this is related to some clinicopathological parameters, although further studies are required to confirm the correlation between S100A10 expression and prognosis of lung adenocarcinoma patients.
The immune system of Xenopus.

Presentation des elements du systeme immunitaire de Xenopus: systeme lymphoide, systeme d'histocompatibilite majeur, immunoglobuline. Le fonctionnement de ce systeme est considere (reponse immune, tolerance, diversite des anticorps) ainsi que son developpement. L'impact de la polyploidie sur le systeme immunitaire de Xenopus est discute
Certificateless Authenticated Group Key Agreement Protocol for Dynamic Groups

A group key agreement protocol is a process to establish a cryptographic key for a group of participants over an open network. In this paper, we propose a group key agreement (CAGKA) protocol, based on a certificateless public key cryptosystem. CAGKA protocol provides group key establishment and group membership change (join and leave) services for dynamic groups. This protocol is proved to be secure against passive and active adversaries and is more efficient than previous group key agreement protocols.
Ovulation rate, lambing rate, litter size and embryo survival of Rambouillet sheep selected for high and low reproductive rate.

Ewes from lines selected for high and low reproductive rate and a control line bred and selected randomly were endoscopically examined 3 to 5 d after breeding to determine ovulation rates in the fall of 1985, 1986 and 1987. Fertility (ewes lambing per ewe exposed), lambing rate (lambs born per ewe exposed) and litter size (lambs born per ewe lambing) were evaluated at lambing in the spring of each year. Embryonic survival was estimated as the number of lambs born per corpora lutea. Ovulation rates were 1.28, 1.73 and 1.46 for low, high and control lines, respectively. More (P less than .01) single ovulations occurred in low-line ewes than in the other two lines; high-line ewes had more (P less than .01) twin ovulations than did low- or control-line ewes. Fertility did not differ among lines. Selection line affected (P less than .01) lambing rate at first and all services. Control-line ewes had mean lambing rates at first and all services that were intermediate between those of the low and high lines, which were different from each other. Line x age of ewe interactions existed (P less than .01) for lambing rate at all services and litter size at first and all services. High-line ewes had lower lambing rates and litter sizes as 2-yr-olds than other lines, but their performance increased steadily to 6-yr-olds, whereas the low and control lines remained relatively constant. Embryo survival differed (P less than .10) between lines, being 74%, 63% and 67% for low, high and control lines, respectively. (ABSTRACT TRUNCATED AT 250 WORDS)
Early reproductive investment, senescence and lifetime reproductive success in female Asian elephants

The evolutionary theory of senescence posits that as the probability of extrinsic mortality increases with age, selection should favour early‐life over late‐life reproduction. Studies on natural vertebrate populations show early reproduction may impair later‐life performance, but the consequences for lifetime fitness have rarely been determined, and little is known of whether similar patterns apply to mammals which typically live for several decades. We used a longitudinal dataset on Asian elephants (Elephas maximus) to investigate associations between early‐life reproduction and female age‐specific survival, fecundity and offspring survival to independence, as well as lifetime breeding success (lifetime number of calves produced). Females showed low fecundity following sexual maturity, followed by a rapid increase to a peak at age 19 and a subsequent decline. High early life reproductive output (before the peak of performance) was positively associated with subsequent age‐specific fecundity and offspring survival, but significantly impaired a female's own later‐life survival. Despite the negative effects of early reproduction on late‐life survival, early reproduction is under positive selection through a positive association with lifetime breeding success. Our results suggest a trade‐off between early reproduction and later survival which is maintained by strong selection for high early fecundity, and thus support the prediction from life history theory that high investment in reproductive success in early life is favoured by selection through lifetime fitness despite costs to later‐life survival. That maternal survival in elephants depends on previous reproductive investment also has implications for the success of (semi‐)captive breeding programmes of this endangered species.
Do “Near Death Experiences” Occur Only Near Death?

Near death experiences are being reported with increasing frequency, but whether the constellation of factors comprising these experiences is unique to near death situations is unknown. This investigation compared near death experiences to other out-of-body experiences to determine if there are unique features associated with near death experiences. Our results indicate that there are no characteristics which are exclusive to near death situations, but our analysis of t-tests is highly suggestive of a number of distinguishing features which differentiate near death experiences from other out-of-body experiences.
Selective Perceptual Impairments After Perirhinal Cortex Ablation

It has been suggested that the primate perirhinal cortex contributes exclusively to memory. However, recent studies in macaque monkeys have implied that the perirhinal cortex may also contribute to object perception. To investigate whether the perirhinal cortex does contribute to perception, we devised several perceptual oddity tasks in which monkeys had to choose which stimulus of several presented concurrently on a touch screen was different. Macaques with bilateral perirhinal cortex ablations were selectively impaired relative to controls at perceptually discriminating the odd stimulus when the odd stimulus was a different object and when the discrimination could not be done on the basis of simple differences in features between the stimuli. They remained unimpaired relative to controls on discriminating the odd stimulus when the odd stimulus was a different color, a different shape, or a different size even when these discriminations were extremely difficult. They were also impaired on human and monkey face oddity tasks and oddity tasks with scenes containing objects. Therefore, we reject the notion that the macaque perirhinal cortex has a role exclusive to memory and conclude that the macaque perirhinal cortex does contribute to perception. We argue that the perirhinal cortex is neither specialized for perception nor memory processes alone, but rather, is specialized for processing stimuli that require processing at a more abstract level such as at the level of an object and that the perirhinal cortex contributes to both memory and perception of such stimuli.