Miracle-dz/UniFAR-FTUs huggingface dataset:
A Leafhopper-Transmissible DNA Virus with Novel Evolutionary Lineage in the Family Geminiviridae Implicated in Grapevine Redleaf Disease by Next-Generation Sequencing

A graft-transmissible disease displaying red veins, red blotches and total reddening of leaves in red-berried wine grape (Vitis vinifera L.) cultivars was observed in commercial vineyards. Next-generation sequencing technology was used to identify etiological agent(s) associated with this emerging disease, designated as grapevine redleaf disease (GRD). High quality RNA extracted from leaves of grape cultivars Merlot and Cabernet Franc with and without GRD symptoms was used to prepare cDNA libraries. Assembly of highly informative sequence reads generated from Illumina sequencing of cDNA libraries, followed by bioinformatic analyses of sequence contigs resulted in specific identification of taxonomically disparate viruses and viroids in samples with and without GRD symptoms. A single-stranded DNA virus, tentatively named Grapevine redleaf-associated virus (GRLaV), and Grapevine fanleaf virus were detected only in grapevines showing GRD symptoms. In contrast, Grapevine rupestris stem pitting-associated virus, Hop stunt viroid, Grapevine yellow speckle viroid 1, Citrus exocortis viroid and Citrus exocortis Yucatan viroid were present in both symptomatic and non-symptomatic grapevines. GRLaV was transmitted by the Virginia creeper leafhopper (Erythroneura ziczac Walsh) from grapevine-to-grapevine under greenhouse conditions. Molecular and phylogenetic analyses indicated that GRLaV, almost identical to recently reported Grapevine Cabernet Franc-associated virus from New York and Grapevine red blotch-associated virus from California, represents an evolutionarily distinct lineage in the family Geminiviridae with genome characteristics distinct from other leafhopper-transmitted geminiviruses. GRD significantly reduced fruit yield and affected berry quality parameters demonstrating negative impacts of the disease. Higher quantities of carbohydrates were present in symptomatic leaves suggesting their possible role in the expression of redleaf symptoms.
The value of values: Resourcing co-design of ubiquitous computing

The importance of values in design work is gaining increasing attention. However, some of the work to date takes an approach which starts with generic values, or assumes values are constant. Through discussion of three accounts of value discovery and value evolution in projects focused on exploring novel uses of ubiquitous computing, we complement current thinking by arguing for the use of users' values as a resource in the co-design process. In particular, this paper shows how users' values: (a) are spontaneously expressed whether or not particular elicitation methods are used; (b) are not fixed, but can change dynamically during the co-design process in response to ideas, prototypes and demonstrators; (c) help mediate and shape the relationships of users to designers; (d) can support users' creative, functional and technical engagement in co-design – areas that can often prove difficult. Focusing on practical examples that demonstrate this approach, we conclude that values may act as a central resource for co-design in a larger variety of ways than has hitherto been recognised.
PV Cell Angle Optimization for Energy Generation-Consumption Matching in a Solar Powered Cellular Network

An inherent problem of solar-energy-powered-small-cell base stations (SBSs) is that the energy generation of the photovoltaic (PV) cell does not match the energy consumption of the SBS in time. In this paper, we propose optimizing the PV cell orientation angle to achieve a good match between the energy generation and consumption profiles on a daily time scale. The optimization is formulated as an integer linear programming problem. We also derive an expression for the correlation between the energy generation and consumption profiles to evaluate their general interaction independent of the exact PV cell or SBS deployment setup. The numerical evaluation of the proposed angle optimization in a business area in London in summer/winter shows that the optimal PV cell orientation in summer contradicts the conventional assumption of south facing being optimal in the northern hemisphere. Instead, a southwest orientation should be chosen in summer due to its ability to shift the energy generation peak toward the energy consumption peak in the afternoon at an SBS in central London. This is in accordance with the prediction given by our derived correlation between the solar energy generation and consumption profiles.
The Rewarding Nature of Anger Rumination in Borderline Personality Disorder : An f MRI

OF DISSERTATION THE REWARDING NATURE OF ANGER RUMINATION IN BORDERLINE PERSONALITY DISORDER: AN FMRI INVESTIGATION Anger rumination, or persistently dwelling on feelings of anger, is associated with borderline personality disorder (BPD) and related features, such as aggressive behavior and cognitive distortions. To develop more effective treatments, it is crucial to understand why individuals with BPD engage in anger rumination despite its negative outcomes. The activation of energy associated with anger, as well as feelings of justification and validation, may be experienced in the short-term as rewarding. This may prevent individuals with BPD from attempting to reduce their rumination. Functional magnetic resonance imaging (fMRI) and behavioral methods were utilized to examine this theory in a sample of women diagnosed with BPD (n=13) and healthy controls (n=15). In an initial session, all participants were an administered a diagnostic interview for BPD, as well a series of self-report measures. In a second session, all participants completed an essay-writing task prior to the fMRI scan. All participants were provided with identical, highly critical feedback about their essays from a supposed essay evaluator. In response to this interpersonal provocation, participants with BPD demonstrated higher activation in brain regions associated with self-conscious reactivity to errors (insula, ventrolateral prefrontal cortex). Subsequent directed provocationfocused thought, compared to neutral-focused thought, produced greater activation in regions previously associated with anger rumination (dorsomedial prefrontal cortex, lateral orbitofrontal cortex) across groups. As hypothesized, anger rumination, relative to neutral-focused thought, produced greater activation in brain regions associated with reward and pleasure (nucleus accumbens) for the BPD group only. No significant differences were observed for self-focused thought. Following the directed rumination task, participants completed a competitive reaction time task that provides an opportunity for participants to act aggressively, supposedly against their essay evaluator. The BPD group demonstrated significantly higher levels of aggressive behavior; however, no significant group differences emerged in neural functioning during the task. These findings suggest that anger rumination may be positively reinforcing for individuals with BPD, which has implications for treatment approaches.
Characterization and Localization of Insoluble Organic Matrices Associated with Diatom Cell Walls: Insight into Their Roles during Cell Wall Formation

Organic components associated with diatom cell wall silica are important for the formation, integrity, and function of the cell wall. Polysaccharides are associated with the silica, however their localization, structure, and function remain poorly understood. We used imaging and biochemical approaches to describe in detail characteristics of insoluble organic components associated with the cell wall in 5 different diatom species. Results show that an insoluble organic matrix enriched in mannose, likely the diatotepum, is localized on the proximal surface of the silica cell wall. We did not identify any organic matrix embedded within the silica. We also identified a distinct material consisting of glucose polymer with variable localization depending on the species. In some species this component was directly involved in the morphogenesis of silica structure while in others it appeared to be only a structural component of the cell wall. A novel glucose-rich structure located between daughter cells during division was also identified. This work for the first time correlates the structure, composition, and localization of insoluble organic matrices associated with diatom cell walls. Additionally we identified a novel glucose polymer and characterized its role during silica structure formation.
Short term prediction of extreme returns based on the recurrence interval analysis

Being able to predict the occurrence of extreme returns is important in financial risk management. Using the distribution of recurrence intervals—the waiting time between consecutive extremes—we show that these extreme returns are predictable in the short term. Examining a range of different types of returns and thresholds we find that recurrence intervals follow a q-exponential distribution, which we then use to theoretically derive the hazard probability . Maximizing the usefulness of extreme forecasts to define an optimized hazard threshold, we indicate a financial extreme occurring within the next day when the hazard probability is greater than the optimized threshold. Both in-sample tests and out-of-sample predictions indicate that these forecasts are more accurate than a benchmark that ignores the predictive signals. This recurrence interval finding deepens our understanding of reoccurring extreme returns and can be applied to forecast extremes in risk management.
Experimental study of the impact behavior of laminated composites stricken by sharp impactors

Abstract In this study, the influence of the impactor shape on the dynamic response of E-glass/epoxy laminates was investigated. Composite samples were impacted using steel 90° and 120° conical, 24 mm and 12 mm in diameter hemispherical, pyramidal impactors via a specially developed drop weight test machine. The impact tests were performed at impactor mass (20 kg) for impact velocity (2.5 m/s). Plate specimens consisting of 18 plies for tests (180×50 mm) with a nominal thickness (7 mm) were used. Contact force-time and contact force-deflection data obtained from the experiments were interpreted. It was found that the contact force was smaller in the 90° conical impactor while it was bigger in the 24 mm hemispherical one. Absorbed energies were also investigated. The absorbed energy obtained for pyramidal impactor was greater than that of the others. Furthermore, overall damage areas caused by the impactor were evaluated.
Lycopene Attenuates Tulathromycin and Diclofenac Sodium-Induced Cardiotoxicity in Mice

Recent experiments showed a potential cardiotoxic effect of the macrolide antibiotic (tulathromycin). This study was performed to investigate whether diclofenac sodium (DFS) potentiates the cardiotoxicity of tulathromycin and increases the cardioprotective effects of lycopene against DFS and tulathromycin. Seven groups (eight per group) of adult Swiss albino mice received saline (control), tulathromycin (a single subcutaneous dose of 28 mg/kg/bw on day 14), DFS (a single oral dose of 100 mg/kg/bw on day 14), tulathromycin plus DFS, or lycopene (oral, 10 mg/kg/bw daily for 15 d) combined with tulathromycin, DFS, or both. Compared to the control group, the administration of tulathromycin or DFS (individually or in combination) caused significantly elevated (p < 0.05) serum levels of Creatine kinase-myocardial B fraction (CK-MB), lactate dehydrogenase, and cardiac-specific troponin-T and tissue levels of nitric oxide and malondialdehyde that were accompanied by significantly decreased tissue reduced glutathione content and glutathione peroxidase, superoxide dismutase, and catalase antioxidant enzyme activity. Upon histopathological and immunohistochemical examination, the mean pathology scores and the percentages of caspase-3-, Bax-, and CK-positive regions were significantly higher in the tulathromycin- and/or DFS-treated groups than in control mice. For all these parameters, the pathological changes were more significant in the tulathromycin–DFS combination group than in mice treated with either drug individually. Interestingly, co-administration of lycopene with tulathromycin and/or DFS significantly ameliorated the changes described above. In conclusion, DFS could potentiate the cardiotoxic effects of tulathromycin, whereas lycopene can serve as a cardioprotective agent against DFS and tulathromycin.
Wavelet estimation of functional coefficient regression models

The area of nonlinear time series models has experienced a great development since the 1980s. Although there is a wide range of parametric nonlinear time series models, in general, we do not know if the postulated model is the most appropriated one for a specific data set. This situation highlights the importance of nonparametric models. An interesting nonparametric model to fit nonlinear time series is the well-known functional coefficient regression model. Nonparametric estimations by, e.g., local linear regression and splines, are developed in the literature. In this work, we study the estimation of such a model using wavelets. It is a proposal that takes into account both, classical and warped wavelets. We present the rates of convergence of the proposed estimators and carry out simulation studies to evaluate automatic procedures (among AIC, AICc and BIC) for selecting the coarsest and finest levels to be used during the estimation process. Moreover, we illustrate the methodology with an application to a real data set, where we also calculate multi-step-ahead forecasts and compare the results with other methods known in the literature.
Passing faces: sequence-dependent variations in the perceptual processing of emotional faces

ABSTRACT There is broad evidence that contextual factors influence the processing of emotional facial expressions. Yet temporal-dynamic aspects, inter alia how face processing is influenced by the specific order of neutral and emotional facial expressions, have been largely neglected. To shed light on this topic, we recorded electroencephalogram from 168 healthy participants while they performed a gender-discrimination task with angry and neutral faces. Our event-related potential (ERP) analyses revealed a strong emotional modulation of the N170 component, indicating that the basic visual encoding and emotional analysis of a facial stimulus happen, at least partially, in parallel. While the N170 and the late positive potential (LPP; 400–600 ms) were only modestly affected by the sequence of preceding faces, we observed a strong influence of face sequences on the early posterior negativity (EPN; 200–300 ms). Finally, the differing response patterns of the EPN and LPP indicate that these two ERPs represent distinct processes during face analysis: while the former seems to represent the integration of contextual information in the perception of a current face, the latter appears to represent the net emotional interpretation of a current face.
Bone volume changes after immediate implant placement with or without flap elevation

OBJECTIVES The aims of this prospective study were to evaluate bone dimensions after immediate implant placement with simultaneous grafting of the buccal gap, to determine if initial buccal bone width had an influence on bone remodelling and to compare bone volume changes using a flap or a flapless approach after 6 months of healing. MATERIAL AND METHODS This prospective study included patients who required an extraction and a subsequent immediate implant placement at a non-molar site. In those cases where tooth extraction was not feasible with a flapless approach (test group) a mucoperiosteal flap was carefully elevated (control group). After extraction, a cone beam computed tomography (CBCT) was taken. Then, an implant was placed and the buccal gap was grafted using anorganic bovine bone. After 6 months of healing, a second CBCT was performed. A blinded investigator superimposed both images and performed a series of measurements to determine bone volume changes between the two time points. RESULTS Thirty-five patients were included in this study, 20 of which belonged to the test group. All together, the differences between baseline and 6 months in buccal plate height, lingual plate height and in ridge width at 2, 4 and 6 mm were 0.48 ± 1.35; 0.58 ± 1.51; 0.64 ± 0.81; 0.59 ± 1.36 and 0.52 ± 1.16, respectively. Only a moderate correlation was observed between initial buccal plate width and buccal plate height at 6 months (P = 0.0001). No statistically significant differences were observed between flap and flapless approach. CONCLUSIONS A mean reduction of around 0.5 mm in height and width after placing immediate implants and filling the residual gap with anorganic bovine bone may be expected. No significant association between initial buccal bone width and ridge width at 6 months was seen. No statistically significant differences were found between the two treatment protocols although more ridge reduction was observed for the flap group.
Association between Obesity and Parental Weight Status in Children and Adolescents

Objective: This study aims to assess the relationship between body mass index (BMI) of children and that of their parents in a nationally-representative sample of Iranian population. Methods: This cross-sectional nationwide study was conducted in 2011-2012 among 6-18-year-old students and their parents living in 30 provinces of Iran. Socio-demographic information was collected. The BMI values of the children/adolescents were categorized according to the World Health Organization reference curves. Association between parental and student weight status was examined using ordinal regression models after adjustment for potential confounders. Results: Overall, 23043 children and adolescents and one of their parents participated in this study (50.7% boys, 73.4% urban status). Mean age of the subjects was 12.55±3.31 years. Mean BMI values of parents and children/adolescents were 27.0±4.57 and 18.8±4.4 kg/m2, respectively. After adjusting for confounders, overweight and/or obesity in students of both genders was found to be significantly associated with parental overweight and/or obesity. In those students who had obese parents, the odds ratio (OR) of being obese was 2.79 for boys [OR=2.79; 95% confidence interval (CI)=2.44-3.20] and 3.46 for girls (OR=3.46; 95% CI=3.03-3.94) compared to their peers with normal-weight parents. Boys with overweight parents were 1.7 times more overweight than their counterparts with normal-weight parents (OR=1.70; 95% CI=1.15-1.92). Similarly, girls who had overweight parents were more overweight compared to those with normal-weight parents (OR=2.00; 95% CI=1.77-2.25). Conclusion: Our findings highlight the importance of the shared family environment as a multi-factorial contributor to the childhood obesity epidemic and the necessity of implementing family-centered preventive programs.
Environmental interventions for altering eating behaviours of employees in the workplace: a systematic review

Environmental, or ‘choice‐architecture’, interventions aim to change behaviour by changing properties/contents of the environment and are commonly used in the workplace to promote healthy behaviours in employees. The present review aimed to evaluate and synthesize the evidence surrounding the effectiveness of environmental interventions targeting eating behaviour in the workplace. A systematic search identified 8157 articles, of which 22 were included in the current review. All included studies were coded according to risk of bias and reporting quality and were classified according to the emergent typology of choice‐architecture interventions. More than half of included studies (13/22) reported significant changes in primary measures of eating behaviour (increased fruit/veg consumption, increased sales of healthy options and reduction in calories purchased). However, only one study produced a small significant improvement in weight/body mass index. Many studies had a high or unknown risk of bias; reporting of interventions was suboptimal; and the only trial to measure compensatory behaviours found that intervention participants who ate less during the intervention ate more out with the workplace later in the day. Hence, we conclude that more rigorous, well‐reported studies that account for compensatory behaviours are needed to fully understand the impact of environmental interventions on diet and importantly on weight/body mass index outcomes.
Effectiveness of interventions on physical activity in overweight or obese children: a systematic review and meta‐analysis including studies with objectively measured outcomes

There is no consensus on interventions to be recommended in order to promote physical activity among overweight or obese children. The objective of this review was to assess the effects on objectively measured physical activity, of interventions promoting physical activity among overweight or obese children or adolescents, compared to no intervention or to interventions without a physical activity component. Publications up to December 2015 were located through electronic searches for randomized controlled trials resulting in inclusion of 33 studies. Standardized mean differences from baseline to post‐intervention and to long‐term follow‐up were determined for intervention and control groups and meta‐analysed using random effects models. The meta‐analysis showed that interventions had no effect on total physical activity of overweight and obese children, neither directly post‐intervention (−0.02 [−0.15, 0.11]) nor at long‐term follow‐up (0.07 [−0.27, 0.40]). Separate analyses by typology of intervention (with or without physical fitness, behavioural or environmental components) showed similar results (no effect). In conclusion, there is no evidence that currently available interventions are able to increase physical activity among overweight or obese children. This questions the contribution of physical activity to the treatment of overweight and obesity in children in the studied interventions and calls for other treatment strategies.
Similarity of Bisphenol A Pharmacokinetics in Rhesus Monkeys and Mice: Relevance for Human Exposure

Objective Daily adult human exposure to bisphenol A (BPA) has been estimated at < 1 μg/kg, with virtually complete first-pass conjugation in the liver in primates but not in mice. We measured unconjugated and conjugated BPA levels in serum from adult female rhesus monkeys and adult female mice after oral administration of BPA and compared findings in mice and monkeys with prior published data in women. Methods Eleven adult female rhesus macaques were fed 400 μg/kg deuterated BPA (dBPA) daily for 7 days. Levels of serum dBPA were analyzed by isotope-dilution liquid chromatography–mass spectrometry (0.2 ng/mL limit of quantitation) over 24 hr on day 1 and on day 7. The same dose of BPA was fed to adult female CD-1 mice; other female mice were administered 3H-BPA at doses ranging from 2 to 100,000 μg/kg. Results In monkeys, the maximum unconjugated serum dBPA concentration of 4 ng/mL was reached 1 hr after feeding and declined to low levels by 24 hr, with no significant bioaccumulation after seven daily doses. Mice and monkeys cleared unconjugated serum BPA at virtually identical rates. We observed a linear (proportional) relationship between administered dose and serum BPA in mice. Conclusions BPA pharmacokinetics in women, female monkeys, and mice is very similar. By comparison with approximately 2 ng/mL unconjugated serum BPA reported in multiple human studies, the average 24-hr unconjugated serum BPA concentration of 0.5 ng/mL in both monkeys and mice after a 400 μg/kg oral dose suggests that total daily human exposure is via multiple routes and is much higher than previously assumed.