Miracle-dz/UniFAR-FTUs huggingface dataset:
Morphologic Evidence for L-Citrulline Conversion to L-Arginine Via the Argininosuccinate Pathway in Porcine Cerebral Perivascular Nerves

Results from biochemical and pharmacologic studies suggest that Lcitrulline is taken up by cerebral perivascular nerves and is converted to Larginine for synthesizing nitric oxide (NO). The current study was designed using morphologic techniques to determine whether Lcitrulline is taken up into axoplasm of perivascular nerves and to explore the possibility that conversion of Lcitrulline to Larginine in these nerves is through the argininosuccinate pathway in porcine cerebral arteries. Results from light and electron microscopic autoradiographic studies indicated that dense silver grains representing L-[3H]citrulline uptake were found in cytoplasm of perivascular nerves, smooth muscle cells, and endothelial cells. The neuronal silver grains were significantly decreased in arteries pretreated with glutamine, which has been shown biochemically to block neuronal uptake of Lcitrulline. Results from light and electron microscopic immunohistochemical and histochemical studies indicate that dense nitric oxide synthase-immunoreactive (NOS-I), argininosuccinate synthetase-immunoreactive (ASS-I), and argininosuccinate lyase-immunoreactive (ASL-I) fibers were found in the adventitia of cerebral arteries. NOS-, ASS-, and ASL-immunoreactivities fibers were found in the axoplasm and in the endothelium. In whole-mount preparations, the NOS-I, ASS-I, and ASL-I fibers were completely coincident with NADPH diaphorase fibers, suggesting that axoplasmic ASS, ASL, and NOS were co-localized in the same neurons. These studies provide the first morphologic evidence indicating that Lcitrulline is taken up into cytoplasm of cerebral perivascular nerves and that the axoplasmic enzymes catalyzing the conversion of Lcitrulline to Larginine (for synthesizing NO) by argininosuccinate pathway always are co-localized in same neurons. These results support the hypothesis that Lcitrulline, the by-product of NO synthesis, is recycled to form Larginine for synthesizing NO in perivascular nerves to mediate cerebral neurogenic vasodilation. Results of the current morphologic studies also support the presence of Lcitrulline-Larginine cycle in cerebral vascular endothelium.
Role of proinflammatory cytokines and β‐chemokines in controlling HIV replication

Several members of the cytokine network play an important role in controlling the replication of the human immunodeficiency virus (HIV) in several experimental systems. Their effects can be categorized in the following three functional groups: (1) HIV‐inductive cytokines; (2) HIV‐suppressive cytokines; (3) cytokines with both activating and inhibiting capacities. Studies on the mechanism of action of these molecules have highlighted the fact that several steps of the retrovirus life cycle, from binding to budding of progeny virions from the infected cell, are affected by cytokines. This general concept has been recently substantiated by the discovery that certain β‐chemokines can act as blockers of viral entry by interfering with HIV coreceptors. Finally, it is important to recognize that cytokines have gone beyond their role as potential pathogenetic or protective endogenous cofactors in HIV replication and disease progression, and are becoming experimental therapeutic agents for HIV disease, best illustrated thus far by the case of interleukin‐2. J. Leukoc. Biol. 62: 34–40; 1997.
Efficient Arguments without Short PCPs

Current constructions of efficient argument systems combine a short (polynomial size) PCP with a cryptographic hashing technique. We suggest an alternative approach for this problem that allows to simplify the underlying PCP machinery using a stronger cryptographic technique. More concretely, we present a direct method for compiling an exponentially long PCP which is succinctly described by a linear oracle function \pi : F^n \to F into an argument system in which the verifier sends to the prover O(n) encrypted field elements and receives O(1) encryptions in return. This compiler can be based on an arbitrary homomorphic encryption scheme. Applying our general compiler to the exponential size Hadamard code based PCP of Arora et al. (JACM 1998) yields a simple argument system for NP in which the communication from the prover to the verifier only includes a constant number of short encryptions. The main tool we use is a new cryptographic primitive which allows to efficiently commit to a linear function and later open the output of the function on an arbitrary vector. Our efficient implementation of this primitive is independently motivated by cryptographic applications.
Development of Wireless Brain Computer Interface With Embedded Multitask Scheduling and its Application on Real-Time Driver's Drowsiness Detection and Warning

Biomedical signal monitoring systems have been rapidly advanced with electronic and information technologies in recent years. However, most of the existing physiological signal monitoring systems can only record the signals without the capability of automatic analysis. In this paper, we proposed a novel brain-computer interface (BCI) system that can acquire and analyze electroencephalogram (EEG) signals in real-time to monitor human physiological as well as cognitive states, and, in turn, provide warning signals to the users when needed. The BCI system consists of a four-channel biosignal acquisition/amplification module, a wireless transmission module, a dual-core signal processing unit, and a host system for display and storage. The embedded dual-core processing system with multitask scheduling capability was proposed to acquire and process the input EEG signals in real time. In addition, the wireless transmission module, which eliminates the inconvenience of wiring, can be switched between radio frequency (RF) and Bluetooth according to the transmission distance. Finally, the real-time EEG-based drowsiness monitoring and warning algorithms were implemented and integrated into the system to close the loop of the BCI system. The practical online testing demonstrates the feasibility of using the proposed system with the ability of real-time processing, automatic analysis, and online warning feedback in real-world operation and living environments.
Selective Insecticide-Induced Stimulation on Fecundity and Biochemical Changes in Tryporyza incertulas (Lepidoptera: Pyralidae)

Abstract The use of selective insecticides in rice, Oryza sativa L. , fields often causes resurgence of nontarget pest insects. This study was conducted to investigate the effect of two selective insecticides, buprofezin and imidacloprid, on Tryporyza incertulas (Walker), a nontarget pest. After larval feeding on rice plants treated with each insecticide, fecundity, ovary protein content, and titer of juvenile hormone III (JHIII) in the resulting female moths were determined with ‘Xiushui 63’ rice susceptible to T. incertulas and ‘Zhendao 2’ moderately resistant to T. incertulas. The fecundity of females developed from larvae that fed on the insecticide-treated Xiushui 63 plants was stimulated compared with that of moths from larvae that fed on rice plants that were not treated with either insecticide. There was no stimulating effect in females from larvae that fed on insecticide-treated Zhendao 2 plants. The weight of fourth instars (final instars) that fed on the insecticide-treated Xiushui 63 rice plants was significantly greater than that of control, increasing by 50.3 and 46.7% for 60 and 112.5 g (AI) ha−1 buprofezin, and by 23.7 and 19.5% for 15 and 37.5 g (AI) ha−1 imidacloprid treatments, respectively. Ovary protein content in adult females developed from larvae that fed on the rice treated with the high dose of buprofezin was significantly higher than that in control. For the high and low doses of imidacloprid during the second instar, and the low dose of imidacloprid during the fourth instar, JHIII titers in female adults were also significantly higher than that in control, increasing by 152.81, 90.52, and 114.19%, respectively.
Angiotensin Type 2 Receptor Agonist Compound 21 Reduces Vascular Injury and Myocardial Fibrosis in Stroke-Prone Spontaneously Hypertensive Rats

—Angiotensin type 2 receptor–mediated effects of angiotensin II appear to counteract many of the effects mediated via the angiotensin type 1 receptor. Compound 21 (C21), a selective angiotensin type 2 receptor agonist, has demonstrated beneficial effects on cardiac function after myocardial infarction in rodents. We hypothesized that C21 alone or in combination with an angiotensin type 1 receptor antagonist would blunt the development of hypertension and vascular damage in stroke-prone spontaneously hypertensive rats. Six-week–old stroke-prone spontaneously hypertensive rats received C21 (1 mg/kg per day), the angiotensin type 1 receptor antagonist losartan (10 mg/kg per day), C21 plus losartan, or vehicle PO for 6 weeks. Systolic blood pressure was lower in losartan and C21-losartan combination groups (P<0.001). Endothelium-dependent relaxation was enhanced (P<0.001) in the C21-losartan combination group at lower acetylcholine concentrations. C21 or C21-losartan combination reduced vascular stiffness, aortic medial and myocardial interstitial collagen content, and aortic fibronectin (P<0.05). C21 and losartan decreased the expression of 2 genes associated with cardiac hypertrophy, myosin heavy chain-&bgr; (myh7) by 30 to 50%, and &agr;-skeletal muscle actin by 30% to 35% (P<0.05). C21-losartan combination caused an additional 40% reduction in myh7 compared with C21 (P<0.01). Aortic superoxide generation was reduced equally by the 3 treatments (P<0.001). Monocyte/macrophage infiltration in the aorta and kidney (P<0.001) and T-lymphocyte infiltration in the renal cortex (P<0.05) were lowered similarly by the 3 treatments. These data suggest that C21 alone or in combination with losartan may improve endothelial function and vascular composition and mechanics by reducing oxidative stress, collagen content, fibronectin, and inflammatory cell infiltration in stroke-prone spontaneously hypertensive rats.
Impact of Breast Cancer and Combination Chemotherapy on Oxidative Stress, Hepatic and Cardiac Markers

Purpose Carcinoma of the breast is the most prevalent cancer among Egyptian women and constitutes 29% of National Cancer Institute cases. The aim of this study was to determine the effect of breast cancer on oxidative stress, cardiac markers and liver function tests, moreover the role of 5-fluorouracil, doxorubicin, and cyclophosphamide (FAC) in the treatment of breast cancer and its mechanism through changing the measured markers. Methods Forty female breast cancer patients who were admitted to the Department of Oncology of the Beni-Suef University Hospital were enrolled in the study. This study included three arms: a control group of healthy age-matched females (n=20), breast cancer patients who weren't receiving treatment (n=20), and patients undergoing treatment with anticancer combination drugs FAC (n=20). Blood samples collected from the control subjects and patients were analysed to determine levels of catalase, reduced glutathione (GSH), uric acid, nitric oxide (NO), malondialdehyde, creatine kinase (CK), lactate dehydrogenase (LDH), liver enzymes (alanine aminotransferase and aspartate aminotransferase), and creatinine. Results The levels of catalase and GSH were significantly reduced (p<0.05) in breast carcinoma and FAC treated breast cancer patients. The lipid peroxidation and NO levels were significantly enhanced in both untreated and FAC treated breast cancer patients. The CK and LDH were significantly enhanced (p<0.05) in the FAC group. Conclusion The results from the present study show that oxidative stress is implicated in breast carcinoma and chemotherapy aggravates this oxidative stress which causes damage to many cellular targets and has the main side effect of cardiotoxicity.
Hierarchical versus Flat Classification of Emotions in Text

We explore the task of automatic classification of texts by the emotions expressed. Our novel method arranges neutrality, polarity and emotions hierarchically. We test the method on two datasets and show that it outperforms the corresponding "flat" approach, which does not take into account the hierarchical information. The highly imbalanced structure of most of the datasets in this area, particularly the two datasets with which we worked, has a dramatic effect on the performance of classification. The hierarchical approach helps alleviate the effect.
Contractile properties of obliquely striated muscle from the mantle of squid (Alloteuthis subulata) and cuttlefish (Sepia officinalis)

The mechanical properties of obliquely striated muscle fibres were investigated using thin slices of mantle from squid Alloteuthis subulata and cuttlefish Sepia officinalis. Brief tetani or twitch stimuli were used as this pattern is likely to occur during jetting of the intact animal. The length­active force relationship for twitches and tetani (0.1s, 50Hz) was similar to that of vertebrate cross-striated fibres. Passive force at the length giving maximum tetanic force was 0.13±0.05P0 (mean ± s.e.m., N=6, where P0 is maximum isometric tetanus force) and increased steeply at longer lengths. Peak force in a brief isometric tetanus (0.2s, 100­150Hz) was 262±16mNmm-2 cross-sectional area of wet tissue (N=6) for squid, and 226±19mNmm-2 (N=7) for cuttlefish. The force­velocity relationship for isotonic shortening during twitches of squid mantle slices was a 'double hyperbolic' relationship as described for cross-striated fibres by Edman. Fitting Edman's equation to the results gave: P*=1.18±0.07, Vmax=2.43±0.11Ltws-1 and 1/G=0.69±0.13 (N=8), where P* is the intercept on the force axis expressed relative to Ptw, peak isometric twitch force, Vmax is the intercept on the velocity axis, Ltw is the length at which Ptw is produced and G is the constant expressing curvature. The large values of 1/G indicate that the force­velocity relationship is not very curved. Maximum power was produced during shortening at 0.45±0.03Ptw (N=8). Maximum power during twitch contraction was 18.3±1.7mWg-1wetmass or, expressed in relative units, (V/Vmax)(P/Ptw), where V is the velocity during shortening and P is the force during shortening, was 0.16±0.01 (N=8), which is higher than that of many cross-striated locomotor muscles.
Role of imatinib in the management of early, operable, and advanced GI stromal tumors (GISTs)

Gastrointestinal stromal tumors (GISTs), the most common sarcoma of the GI tract, have unique kinase mutations that serve as targets for medical therapy. This article reviews the data supporting the use of the tyrosine kinase inhibitor (TKI) imatinib in GIST patients, and how this treatment should be combined with surgical resection (when possible) to optimize patient outcomes. Although surgical resection remains the mainstay of treatment for these tumors, patients with resected GISTs have high relapse rates that can be reduced by 1 year of adjuvant imatinib. Data also support the use of imatinib for patients with recurrent or unresectable GIST. In these patients the drug should be continued until progression, intolerance, or the patients are rendered resectable. Patients with advanced GIST who are successfully resected after imatinib treatment should be placed back on imatinib postoperatively. Patients who develop generalized progression (progression at 2 or more sites) on imatinib should move to other treatments, such as newer TKIs or other targeted approaches currently under study. Genotyping of the tumor should be considered in all pediatric GISTs and high risk adult GISTs, especially if there is progression on imatinib. Quality of life and the cost/benefit of new therapies are important issues for further study in patients with GIST.
Immunologic response in treatment-naïve HIV-2-infected patients: the IeDEA West Africa cohort

Response to antiretroviral therapy (ART) among individuals infected with HIV‐2 is poorly described. We compared the immunological response among patients treated with three nucleoside reverse‐transcriptase inhibitors (NRTIs) to boosted protease inhibitor (PI) and unboosted PI‐based regimens in West Africa.
Nonpharmacological response in hospitalized children with conduct disorder.

OBJECTIVE There is a paucity of research regarding the effects of hospitalization and/or the response to placebo in children with conduct disorder who are hospitalized for chronic and severe aggression. However, many children with this problem are hospitalized and immediately begin pharmacotherapy. In this report, the effects of hospitalization and placebo administration were examined. METHOD Subjects were forty-four children (37 males, 7 females) with conduct disorder, aged 9.83 to 17.14 years, who were hospitalized for chronic and severe aggression. This was a 4-week double-blind and placebo-controlled study with a 2-week single-blind placebo lead-in period. During the 2-week placebo baseline period, aggression was measured on a 24-hour basis, using the Overt Aggression Scale. Only subjects meeting a specific aggression criterion were randomized to the treatment period of the trial. RESULTS Of the 44 subjects enrolled, 23 (52.3%) met the aggression criteria for entering the treatment period (baseline nonresponders), while 21 (47.7%) did not (baseline responders). Thus, almost half of the subjects, while taking no active medication, benefited from the inpatient milieu/structure and/or placebo. CONCLUSION This finding has important treatment and research implications. Medication to treat aggression should not be initiated immediately upon hospitalization because improvements associated with hospitalization may be attributed inaccurately to pharmacotherapy, resulting in unnecessarily medicating children. A placebo baseline period is essential to decrease the risk of a type II error in pharmacological research concerning aggression.
E-β-Ocimene, a Volatile Brood Pheromone Involved in Social Regulation in the Honey Bee Colony (Apis mellifera)

Background In honey bee colony, the brood is able to manipulate and chemically control the workers in order to sustain their own development. A brood ester pheromone produced primarily by old larvae (4 and 5 days old larvae) was first identified as acting as a contact pheromone with specific effects on nurses in the colony. More recently a new volatile brood pheromone has been identified: E-β-ocimene, which partially inhibits ovary development in workers. Methodology and Principal Finding Our analysis of E-β-ocimene production revealed that young brood (newly hatched to 3 days old) produce the highest quantity of E-β-ocimene relative to their body weight. By testing the potential action of this molecule as a non-specific larval signal, due to its high volatility in the colony, we demonstrated that in the presence of E-β-ocimene nest workers start to forage earlier in life, as seen in the presence of real brood. Conclusions/Significance In this way, young larvae are able to assign precedence to the task of foraging by workers in order to increase food stores for their own development. Thus, in the complexity of honey bee chemical communication, E-β-ocimene, a pheromone of young larvae, provides the brood with the means to express their nutritional needs to the workers.
Contrasting effects of fluoroquinolone antibiotics on the expression of the collagenases, matrix metalloproteinases (MMP)-1 and -13, in human tendon-derived cells.

OBJECTIVES Fluoroquinolone antibiotics may cause tendon pain and rupture. We reported previously that the fluoroquinolone ciprofloxacin potentiated interleukin (IL)-1beta-stimulated expression of matrix metalloproteinases (MMP)-3 and MMP-1 in human tendon-derived cells. We have now tested additional fluoroquinolones and investigated whether they have a similar effect on expression of MMP-13. METHODS Tendon cells were incubated for two periods of 48 h with or without fluoroquinolones and IL-1beta. Total ribonucleic acid (RNA) was assayed for MMP messenger RNA by relative quantitative reverse transcriptase polymerase chain reaction, with normalization for glyceraldehyde-3-phosphate dehydrogenase mRNA. Samples of supernatant medium were assayed for MMP output by activity assays. RESULTS MMP-13 was expressed by tendon cells at lower levels than MMP-1, and was stimulated typically 10- to 100-fold by IL-1beta. Ciprofloxacin, norfloxacin and ofloxacin each reduced both basal and stimulated expression of MMP-13 mRNA. In contrast, ciprofloxacin and norfloxacin increased basal and IL-1beta-stimulated MMP-1 mRNA expression. Both the inhibition of MMP-13 and the potentiation of MMP-1 expression by fluoroquinolones were accompanied by corresponding changes in IL-1beta-stimulated MMP output. The non-fluorinated quinolone nalidixic acid had lesser or no effects. CONCLUSIONS Fluoroquinolones show contrasting effects on the expression of the two collagenases MMP-1 and MMP-13, indicating specific effects on MMP gene regulation.
The Recognition of Simple-Triangle Graphs and of Linear-Interval Orders is Polynomial

Intersection graphs of geometric objects have been extensively studied, both due to their interesting structure and their numerous applications; prominent examples include interval graphs and permutation graphs. In this paper we study a natural graph class that generalizes both interval and permutation graphs, namely \emph{simple-triangle} graphs. Simple-triangle graphs - also known as \emph{PI} graphs (for Point-Interval) - are the intersection graphs of triangles that are defined by a point on a line $L_{1}$ and an interval on a parallel line $L_{2}$. They lie naturally between permutation and trapezoid graphs, which are the intersection graphs of line segments between $L_{1}$ and $L_{2}$ and of trapezoids between $L_{1}$ and $L_{2}$, respectively. Although various efficient recognition algorithms for permutation and trapezoid graphs are well known to exist, the recognition of simple-triangle graphs has remained an open problem since their introduction by Corneil and Kamula three decades ago. In this paper we resolve this problem by proving that simple-triangle graphs can be recognized in polynomial time. As a consequence, our algorithm also solves a longstanding open problem in the area of partial orders, namely the recognition of \emph{linear-interval orders}, i.e. of partial orders $P=P_{1}\cap P_{2}$, where $P_{1}$ is a linear order and $P_{2}$ is an interval order. This is one of the first results on recognizing partial orders $P$ that are the intersection of orders from two different classes $\mathcal{P}_{1}$ and $\mathcal{P}_{2}$. In complete contrast to this, partial orders $P$ which are the intersection of orders from the same class $\mathcal{P}$ have been extensively investigated, and in most cases the complexity status of these recognition problems has been already established.