Miracle-dz/UniFAR-FTUs huggingface dataset:
Trigeminal projections to hypoglossal and facial motor nuclei in the rat

This study was undertaken to identify the trigeminal nuclear regions connected to the hypoglossal (XII) and facial (VII) motor nuclei in rats. Anterogradely transported tracers (biotinylated dextran amine, biocytin) were injected into the various subdivisions of the sensory trigeminal complex, and labeled fibers and terminals were searched for in the XII and VII. In a second series of experiments, injections of retrogradely transported tracers (biotinylated dextran amine, gold‐horseradish peroxidase complex, fluoro‐red, fluoro‐green) were made into the XII and the VII, and labeled cells were searched for in the principal sensory trigeminal nucleus, and in the pars oralis, interpolaris, and caudalis of the spinal trigeminal nucleus. Trigeminohypoglossal projections were distributed throughout the ventral and dorsal region of the XII. Neurons projecting to the XII were found in all subdivisions of the sensory trigeminal complex with the greatest concentration in the dorsal part of each spinal subnucleus and exclusively in the dorsal part of the principal nucleus. Trigeminofacial projections reached all subdivisions of the VII, with a gradual decreasing density from lateral to medial cell groups. They mainly originated from the ventral part of the principal nucleus. In the spinal nucleus, most of the neurons projecting to the VII were in the dorsal part of the nucleus, but some were also found in its central and ventral parts. By using retrograde double labeling after injections of different tracers in the XII and VII on the same side, we examined whether neurons in the trigeminal complex project to both motor nuclei. These experiments demonstrate that in the spinal trigeminal nucleus, neurons located in the pars caudalis and pars interpolaris project by axon collaterals to XII and VII. J. Comp. Neurol. 415:91–104, 1999. © 1999 Wiley‐Liss, Inc.
Oxidative stress: a possible mechanism for lead-induced apoptosis and nephrotoxicity

Lead-induced nephrotoxicity is a human health hazard problem. In this study, Human mesangial cells (HMCs) were treated with different concentration of lead acetate (5, 10, 20 μmol/l) in order to investigate the oxidative stress and apoptotic changes. It was revealed that lead acetate could induce a progressive loss in HMCs viability together with a significant increase in the number of apoptotic cells using 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl tetrazolium (MTT) assay and flow cytometry, respectively. The apoptotic morphological changes induced by lead exposure in HMCs were demonstrated by PI-Hochest33342 staining. A DNA laddering pattern in lead-treated cells was shown, which could indicate nuclear fragmentation. In addition, lead acetate significantly increased the levels of malondialehyde (MDA) content and lactate dehydrogenase (LDH) activity. Therefore, it might be concluded that lead could promote HMCs’ oxidative stress and apoptosis, which may be the chief mechanisms of lead-induced nephrotoxicity.
Interaction of Staufen1 with the 5′ end of mRNA facilitates translation of these RNAs

Staufen1 is a component of transported ribonucleoprotein complexes. Genetic work in Drosophila has suggested that Staufen plays a role in the de-repression of translation of oskar mRNA following localization. To determine whether Staufen1 can play a similar role in mammals, we studied translation of transcripts in the presence or in the absence of Staufen1. Translationally repressed mRNAs were generated by fusing the structured human immunodeficiency virus type 1 trans-activating response (TAR) element to the 5′ end of a reporter transcript. In rabbit reticulocyte lysates and in mammalian cultured cells, the addition of Staufen1 resulted in the up-regulation of reporter activity when translation was driven by the TAR-bearing RNA. In contrast, Staufen1 had no effect on translation of efficiently translated mRNAs lacking an apparent structured 5′ end, suggesting that Staufen1-binding to the 5′ end is required for enhanced translation. Consistently, Staufen1 RNA-binding activity is necessary for this translational effect. In addition, similar up-regulation of translation was observed when Staufen1 was tethered to the 5′ end of mRNAs via other structured RNAs, the highest level of translational increase being obtained with the bona fide Staufen1-binding site of the Arf1 transcript. The expression of Staufen1 promoted polysomal loading of TAR-luciferase transcripts resulting in enhanced translation. Our results support a model in which the expression of Staufen1 and its interaction with the 5′ end of RNA and ribosomes facilitate translation initiation.
A Generalized MAC Scheme on Curvilinear Domains

We propose a simple finite difference scheme for Navier--Stokes equations in primitive formulation on curvilinear domains. With proper boundary treatment and interplay between covariant and contravariant components, the spatial discretization admits exact Hodge decomposition and energy identity. As a result, the pressure can be decoupled from the momentum equation with explicit time stepping. No artificial pressure boundary condition is needed. In addition, it can be shown that this spatially compatible discretization leads to uniform inf-sup condition, which plays a crucial role in the pressure approximation of both dynamic and steady state calculations. Numerical experiments demonstrate the robustness and efficiency of our scheme.
Dronedarone and digitalis: individually reduced post-repolarization refractoriness enhances life-threatening arrhythmias.

AIMS Interaction between dronedarone and digitalis has been discussed as a possible cause for increased mortality in the presence of dronedarone observed in the PALLAS trial. The aim of this study was to assess possible proarrhythmic effects of dronedarone in combination with digitalis in an experimental whole heart model. METHODS AND RESULTS Twenty-six female rabbits underwent chronic oral treatment with dronedarone (50 mg/kg/day for 6 weeks). Twenty-four rabbits received placebo. Heart failure was induced by rapid ventricular pacing. Sham-operated rabbits received a right-ventricular pacing lead but were not paced. Thereafter, hearts were isolated and Langendorff-perfused. Monophasic action potentials and a 12 lead electrocardiogram showed a dose-dependent decrease of QT interval, APD90, effective refractory periods, and postrepolarization refractoriness in control hearts and dronedarone-pretreated hearts after application of ouabain (0.1 and 0.2 µM). After acute application of ouabain, ventricular fibrillation (VF) was inducible by programmed ventricular stimulation in 6 of 12 untreated sham hearts (38 episodes) as compared with 7 of 11 dronedarone-pretreated sham hearts (76 episodes). In untreated failing hearts, 6 of 12 hearts were inducible (47 episodes) as compared with 7 of 15 hearts dronedarone-pretreated failing hearts (93 episodes). CONCLUSION In this study, ouabain treatment resulted in an increased ventricular vulnerability in chronically dronedarone-pretreated control and failing hearts. Ouabain led to a significant abbreviation of ventricular repolarization. This was more marked in dronedarone-pretreated hearts and resulted in an elevated incidence of VF. This may help to interpret the results of the PALLAS trial.
Multicenter Quality Control for the Detection of Hepatitis C Virus RNA in Seminal Plasma Specimens

ABSTRACT The discrepant results available in the literature about the presence of hepatitis C virus (HCV) RNA in seminal plasma of men chronically infected by this agent are related, at least in part, to the molecular techniques used and particularly to the wide range of protocols dedicated to RNA extraction. In order to evaluate these protocols and to standardize the method of detection of HCV RNA in this fluid, a panel of coded specimens was tested blindly in 12 French laboratories; it included 14 seminal plasma specimens and four water controls spiked with HCV RNA ranging from 10 to 20,000 IU/ml and two HCV-negative seminal plasma specimens. The extraction step was performed according to methods using either silica beads (NucliSens [Organon Teknika S.A., Fresnes, France]; RNA viral kit [Qiagen, Courtaboeuf, France]) or guanidinium thiocyanate (Amplicor HCV assay; Roche Diagnostics, Meylan, France), preceded or not by a centrifugation of the seminal plasma. For the amplification step, all the laboratories performed the same reverse transcription-PCR technique (Amplicor HCV Cobas assay). The percentage of correct results ranged from 53.3 to 100, the poorest results being obtained when no centrifugation step preceded the Amplicor extraction protocol. The rate of correct results was significantly higher in laboratories using a preliminary centrifugation of the specimen (P = 0.034 by chi-square test). By contrast, the overall number of correct results was not correlated to the initial volume of sample used for the test. These results allowed us to validate standardized techniques adapted to the performance of this test on a routine basis, especially in men infected with HCV and involved in programs of medically assisted reproduction.
An Improved Algorithm for Computing Logarithms over GP(p) and Its Cryptographic Significance

A cryptographic system is described which is secure if and only if computing logarithms over GF(p) is infeasible. Previously published algorithms for computing this function require O(P’/~) complexity in both time and space. An improved algorithm is derived which requires O(log2 p) complexity if p 1 has only small prime factors. Such values of p must be avoided in the cryptosystem. Constructive uses for the new algorithm are also described.
Left‐hemisphere specialization for the processing of acoustic transients

PREVIOUS work suggests that speech sounds incorporating short-duration spectral changes (such as the formation transitions of stop consonants) rely on left hemisphere mechanisms for their adequate processing to a greater degree than do speech sounds incorporating spectral changes of a longer duration (such as vowel sounds). Ten normal subjects were scanned using positron emission tomography while discriminating pure tone stimuli incorporating frequency glides of either short or long duration. A comparison of these two conditions yielded significant activation foci in left orbitofrontal cortex, left fusiform gyrus, and right cerebellum. Because non-linguistic stimuli were used, these foci must reflect some basic low level aspect of neural processing that may be relevant to speech but cannot be a consequence of accessing the speech system itself.
Antithrombotic therapy in coronary artery disease.

In the last two decades, improved treatment of electrical disturbances and cardiac pump failure have reduced mortality after the ultimate, irreversible myocardial event of patients suffering from coronary heart disease: myocardial infarction. However, the major challenge in this field, primary prevention of myocardial ischemia, remains unconquered. The traditional belief that myocardial infarction is due to coronary thrombosis might be challenged by the marginal benefit that anticoagulant, antiplatelet, and fibrinolytic agents have provided. However, the classic view linking the pathogenesis of myocardial infarction to thrombotic disorders 1 is substantiated by recent findings based on objective arteriographic observations. 2 Moreover, there is increasing evidence that coronary thrombosis also plays a pathogenetic role in sudden deaths in patients suffering from ischemic heart disease without myocardial infarction. 3 In light of these considerations, the discrepancy between the formidable effort to reduce morbidity and mortality from myocardial infarction by various antithrombotic strategies and the results achieved is disappointing. But it is not surprising, perhaps, since thrombosis is multifactorial in origin, with a host of pathologic features and many complicated natural regulatory mechanisms. Considering the complexity of the problem, the progress to date must be regarded as promising, even if far from satisfying. This article will review critically the history and present status of antithrombotic therapy in coronary artery disease. We are confident that new knowledge about the mechanisms leading to coronary thrombosis will in time render most present practices obsolete.
Designing and manufacturing consumer products for functionality: a literature review of current function definitions and design support tools

Examines the product design and manufacturing literature to understand why consumer products of daily use often fail to provide the intended function to users’ satisfaction. The review shows that the bulk of published literature addressing functionality and functional representation deals with mechanical systems design, and there are issues that directly affect the consumer that are yet to be accommodated in current research in functional representation. The literature also reveals that very few of the product design support systems have been tested on real design cases, or have been developed and tested using real designers in manufacturing environments – this issue needs serious consideration if efficient designer aids are to be developed in the future. Also, there is relatively little that has been done to develop tools to evaluate alternative design solutions. It is also apparent from this review that the main research focus has been on providing function, rather than on ensuring function in a product that is eventually manufactured.
Factors Influencing Range of Motion after Total Knee Arthroplasty

Background The range of motion after a total knee arthroplasty is an important clinical outcome affecting the life of the patient. The aim of this study was to determine the most important factors influencing the postoperative knee flexion in Tehran, Iran. Methods Between July 2007 and January 2009, on 95 cases of total knee joint replacement (89 patients), who were followed for 1 year postoperatively, the risk factors were assessed. Patient demographics (sex, age, body mass index, previous surgery, preoperative Knee Society System score, and preoperative range of motion) as well as radiographic measurement for preoperative tibiofemoral angle were statistically analyzed and the probable predictors entered into a linear regression model. Results Univariate analysis showed that age, preoperative flexion angle, preoperative flexion arc and preoperative tibiofemoral angle had significant correlation with the postoperative flexion angle. The linear regression model on the other hand revealed that preoperative flexion angle and preoperative tibiofemoral angle were the true predictors of the postoperative flexion angle with coefficients of 0.64 and -0.21, respectively. Conclusion Better range of motion before the surgery with a lower tibiofemoral varus/valgus angle were more likely to result in a better range of motion after the surgery, suggesting that an appropriate timing for the surgery when the knee joint is still in a better function can lead to a better outcome.
Clinical Impacts of Donor Types of Living vs. Deceased Donors: Predictors of One-Year Mortality in Patients with Liver Transplantation

Transplantation studies about the clinical differences according to the type of donors are mostly conducted in western countries with rare reports from Asians. The aims of this study were to evaluate the clinical impacts of the type of donor, and the predictors of 1-year mortality in patients who underwent liver transplantation (LT). This study was performed for liver transplant recipients between May 2010 and December 2014 at the Pusan National University Yangsan Hospital. A total of 185 recipients who underwent LT were analyzed. Of the 185 recipients, 109 (58.9%) belonged to the living donor liver transplantation (LDLT) group. The median age was 52.4 years. LDLT recipients had lower model for end-stage liver disease (MELD) score compared with better liver function than deceased donor liver transplantation (DDLT) recipients (mean ± standard deviation [SD], 12.5 ± 8.3 vs. 24.9 ± 11.7, respectively; P < 0.001), and had more advanced hepatocellular carcinoma (HCC) (62.4% vs. 21.1%, respectively; P = 0.001). In complications and clinical outcomes, LDLT recipients showed shorter stay in intensive care unit (ICU) (mean ± SD, 10.8 ± 8.8 vs. 23.0 ± 13.8 days, respectively, P < 0.001), ventilator care days, and post-operative admission days, and lower 1-year mortality (11% vs. 27.6%, respectively, P = 0.004). Bleeding and infectious complications were less in LDLT recipients. Recipients with DDLT (P = 0.004) showed higher mortality in univariate analysis, and multi-logistic regression analysis found higher MELD score and higher pre-operative serum brain natriuretic peptide (BNP) were associated with 1-year mortality. This study may guide improved management before and after LT from donor selection to post-operation follow up.
Phylogeography and Sex-Biased Dispersal across Riverine Manatee Populations (Trichechus inunguis and Trichechus manatus) in South America

Phylogeographic patterns and sex-biased dispersal were studied in riverine populations of West Indian (Trichechus manatus) and Amazonian manatees (T. inunguis) in South America, using 410bp D-loop (Control Region, Mitochondrial DNA) sequences and 15 nuclear microsatellite loci. This multi-locus approach was key to disentangle complex patterns of gene flow among populations. D-loop analyses revealed population structuring among all Colombian rivers for T. manatus, while microsatellite data suggested no structure. Two main populations of T. inunguis separating the Colombian and Peruvian Amazon were supported by analysis of the D-loop and microsatellite data. Overall, we provide molecular evidence for differences in dispersal patterns between sexes, demonstrating male-biased gene flow dispersal in riverine manatees. These results are in contrast with previously reported levels of population structure shown by microsatellite data in marine manatee populations, revealing low habitat restrictions to gene flow in riverine habitats, and more significant dispersal limitations for males in marine environments.
Changes in sex hormone levels after radical prostatectomy: Results of a longitudinal cohort study

The changes in testosterone and gonadotropin levels in patients who have undergone radical prostatectomy (RP) for clinically localized prostate cancer (PCa) remain unclear. The aim of the present study was to prospectively evaluate the changes in serum testosterone (Te), luteinizing hormone (LH) and follicle-stimulating hormone (FSH) levels in the early months after RP for PCa and the correlation between these hormones at various follow-up times. A total of 100 male patients with clinically localized PCa were consecutively included in the study. The serum levels of Te, LH and FSH were measured prior to RP (baseline) and at 1 and 3 months post-operatively. Changes in the levels of Te, LH and FSH between the baseline and at 1 and 3 months after RP were analyzed with paired sample t-tests. The correlations between LH and Te levels at the various follow-up times were evaluated with a Spearman’s rank correlation coefficient. At 1 month subsequent to RP, the Te levels were significantly decreased (baseline vs. 1 month, P=0.021) and subsequently recovered to the pre-operative value at 3 months (baseline vs. 3 months, P=0.372). The mean Te level at baseline was 15.3 nmol/l, while at 1 and 3 months it was 13.8 and 14.4 nmol/l, respectively. By contrast, the levels of LH and FSH were significantly increased at 1 and 3 months post-surgery, compared with the baseline value (baseline vs. 1 or 3 months, P<0.0001). The pre-operative correlation between LH and Te was lost 1 month after RP and recovered after 3 months. Notably, the LH level at 1 month was markedly correlated with the Te levels recorded after 3 months. In the present study, patients developed compensated hypergonadotropic hypogonadism 3 months after RP.
flying Neotropical aerial insectivorous bats to urbanization

Aim Urbanization is a dominant demographic trend throughout the world that involves massive habitat alterations. Understanding how urbanization affects biota is a crucial prerequisite for development and application of effective species conservation programmes. Our study focuses on Neotropical high flying aerial insectivorous bats, an ecologically important, but so far seriously understudied group of vertebrates. Location Panama. Methods Using acoustic monitoring, we assessed and compared species occurrence, composition and activity of aerial insectivorous bats at three site categories located on the isthmus in Panama: forest, urban areas and a forest‐ town interface. Results In 2 years of field work, we recorded 44,744 bat passes over the microphone and identified a total of 25 aerial insectivorous bat species. Species richness was highest in the forest, decreased towards the forest‐town interface and was lowest at the urban sites, while dominance (Berger-Parker-Index) increased from the forest to the urban sites. Overall, general bat activity (passes min )1 ) was highest at the forest‐town interface and lowest at the urban sites. Multivariate analysis suggests compositional differences in species occurrence and activity among site categories with mainly molossid species occurring in urban areas. Main conclusions Our results clearly demonstrate species-specific differences between high flying aerial insectivorous bats concerning their adaptability and vulnerability to urban areas. Our results suggest that a suite of morphological traits including species mobility determine persistence of aerial insectivorous species in cities. Our results underline the necessity for detailed assessments of species-specific habitat requirements and dynamics of species occurrence and activity over time to develop meaningful conservation tools targeted at aerial insectivorous bats.
Exploitation of Run-Time Partial Reconfiguration for Dynamic Power Management in Xilinx Spartan III-based Systems

Reconfigurable architectures such as FPGAs are a key technology for implementing self-adaptive and flexible systems, since the possibility for dynamic and partial hardware reconfiguration offers a higher degree of freedom in the resource allocation. However, for many applications, modern reconfigurable architectures cause too high power consumption. For this reason, FPGAs are typically used in highly computational applications where the possibility for performing parallel calculations can be exploited to achieve decreased power consumption as compared to a microcontroller based solution. In order to enable the usage of FPGAs even in lowpower applications, techniques for adapting the power consumption according to the work load must be investigated. One novel approach would be to exploit the possibility for dynamic reconfiguration of the FPGA for this purpose. This paper presents the realization of dynamic clock scaling in a Xilinx Spartan 3 based system by performing dynamic and partial reconfiguration of the fixed Digital Clock Manager (DCM) core configuration.