Miracle-dz/UniFAR-FTUs huggingface dataset:
Reversing Hypoxic Cell Chemoresistance in Vitro Using Genetic and Small Molecule Approaches Targeting Hypoxia Inducible Factor-1

The resistance of hypoxic cells to conventional chemotherapy is well documented. Using both adenovirus-mediated gene delivery and small molecules targeting hypoxia-inducible factor-1 (HIF-1), we evaluated the impact of HIF-1 inhibition on the sensitivity of hypoxic tumor cells to etoposide. The genetic therapy exploited a truncated HIF-1α protein that acts as a dominant-negative HIF-1α (HIF-1α-no-TAD). Its functionality was validated in six human tumor cell lines using HIF-1 reporter assays. An EGFP-fused protein demonstrated that the dominant-negative HIF-1α was nucleus-localized and constitutively expressed irrespective of oxygen tension. The small molecules studied were quinocarmycin monocitrate (KW2152), its analog 7-cyanoquinocarcinol (DX-52-1), and topotecan. DX-52-1 and topotecan have been previously established as HIF-1 inhibitors. HT1080 and HCT116 cells were treated with either AdHIF-1α-no-TAD or nontoxic concentrations (0.1 μM; <IC10) of KW2152 and DX-52-1 and exposed to etoposide in air or anoxia (<0.01% oxygen). Topotecan inhibited HIF-1 activity only at cytotoxic concentrations and was not used in the combination study. Etoposide IC50 values in anoxia were 3-fold higher than those in air for HT1080 (2.2 ± 0.3 versus 0.7 ± 0.2 μM) and HCT116 (9 ± 4 versus 3 ± 2 μM) cells. KW2152 and DX-52-1 significantly reduced the anoxic etoposide IC50 in HT1080 cells, whereas only KW2152 yielded sensitization in HCT116 cells. In contrast, AdHIF-1α-no-TAD (multiplicity of infection 50) ablated the anoxic resistance in both cell lines (IC50 values: HT1080, 0.7 ± 0.04 μM; HCT116, 3 ± 1 μM). HIF-1α-no-TAD expression inhibited HIF-1-mediated down-regulation of the proapoptotic protein Bid under anoxia. These data support the potential development of HIF-1 targeted approaches in combination with chemotherapy, where hypoxic cell resistance contributes to treatment failure.
Specific properties of two enteric adenovirus 41 clones mapped within early region 1A

Enteric adenovirus type 40 (Ad40) and Ad41 form the sixth subgenus of human adenoviruses. They are associated with infantile diarrhea but cannot be isolated in conventional cell cultures. The genome of the fastidious enteric Ad41 has been cloned, and the cleavage sites of the genome produced by restriction endonucleases BamHI, EcoRI, HpaI, NruI, PvuI, and SalI have been mapped. To develop useful hybridization methods for direct detection of adenoviruses, a restriction fragment library containing Ad41 DNA, with plasmid pBR322 as vector, has been constructed. Clones have been isolated which contain 8 of 10 possible BamHI fragments of Ad41, inserted into the BamHI cleavage site of the vector. Two of these clones are particularly useful for the detection of adenoviruses. One clone detects members of all human adenovirus subgenera, and the second clone is specific for enteric adenoviruses, in particular Ad41. A conspicuous absence of detectable homology was noted at 1.5 to 3.3 map units of the Ad41 genome in hybridizations against other serotypes of adenoviruses, including the closely related enteric Ad40. This sequence corresponds to the 5' portion of early region Ia.
Ataxia-Telangiectasia Group D Complementing Gene (ATDC) Promotes Lung Cancer Cell Proliferation by Activating NF-κB Pathway

Previous studies suggested Ataxia-telangiectasia group D complementing gene (ATDC) as an oncogene in many types of cancer. However, its expression and biological functions in non-small cell lung cancer (NSCLC) remain unclear. Herein, we investigated its expression pattern in 109 cases of human NSCLC samples by immunohistochemistry and found that ATDC was overexpressed in 62 of 109 NSCLC samples (56.88%). ATDC overexpression correlated with histological type (p<0.0001), tumor status (p = 0.0227) and histological differentiation (p = 0.0002). Next, we overexpressed ATDC in normal human bronchial epithelial cell line HBE and depleted its expression in NSCLC cell lines A549 and H1299. MTT and colony formation assay showed that ATDC overexpression promoted cell proliferation while its depletion inhibited cell growth. Furthermore, cell cycle analysis showed that ATDC overexpression decreased the percentage of cells in G1 phase and increased the percentage of cells in S phase, while ATDC siRNA treatment increased the G1 phase percentage and decreased the S phase percentage. Further study revealed that ATDC overexpression could up-regulate cyclin D1 and c-Myc expression in HBE cells while its depletion down-regulated cyclin D1 and c-Myc expression in A549 and H1299 cells. In addition, ATDC overexpression was also associated with an increased proliferation index, cyclin D1 and c-Myc expression in human NSCLC samples. Further experiments demonstrated that ATDC up-regulated cyclin D1 and c-Myc expression independent of wnt/β-catenin or p53 signaling pathway. Interestingly, ATDC overexpression increased NF-κB reporter luciferase activity and p-IκB protein level. Correspondingly, NF-κB inhibitor blocked the effect of ATDC on up-regulation of cyclin D1 and c-Myc. In conclusion, we demonstrated that ATDC could promote lung cancer proliferation through NF-κB induced up-regulation of cyclin D1 and c-Myc.
Radiocarpal and Midcarpal Instability in Rheumatoid Patients: A Systematic Review

Background: This study was aimed at identifying the criteria for the diagnosis of Radiocarpal instability in rheumatoid arthritis RA). Methods: The main databases were searched to identify studies describing the pathophysiology of Radiocarpal instability in patients with RA. We focussed on the epidemiology, radiographic parameters, criteria for instability and on treatment options. Results. In the search 108 articles were found, of these 12 studies were included for this review. Instability occurs in at an average of 35.2% of the rheumatoid wrists. The instability was found between 8 and 13 years after onset of rheumatoid arthritis. A strong correlation was found between instability, duration of RA and Larsen score. Several radiographic methods were described to evaluate Radiocarpal instability in RA. Several treatment options for instability in patients with RA are described. All with their own indications and limitations. Conclusion: On a standard AP radiograph deformity can be measured using the carpal height and the ulnar translation index of Chamay. This gives an indication for instability. For describing the deterioration of the joints the Larsen score is most used. If there are more radiographs in time the Simmen classification can be used. For real assessment of instability dynamic radiographs are needed. Level of Evidence: Level IV.
Short communication: antiviral activity of subcritical water extract of Brassica juncea against influenza virus A/H1N1 in nonfat milk.

Subcritical water extract (SWE) of Brassica juncea was studied for antiviral effects against influenza virus A/H1N1 and for the possibility of application as a nonfat milk supplement for use as an "antiviral food. " At maximum nontoxic concentrations, SWE had higher antiviral activity against influenza virus A/H1N1 than n-hexane, ethanol, or hot water (80°C) extracts. Addition of 0.5mg/mL of B. juncea SWE to culture medium led to 50.35% cell viability (% antiviral activity) for Madin-Darby canine kidney cells infected with influenza virus A/H1N1. Nonfat milk supplemented with 0.28mg/mL of B. juncea SWE showed 39.62% antiviral activity against influenza virus A/H1N1. Thus, the use of B. juncea SWE as a food supplement might aid in protection from influenza viral infection.
Best-First Surface Realization

Current work in surface realization concentrates on the use of general, abstract algorithms that interpret large, reversible grammars. Only little attention has been paid so far to the many small and simple applications that require coverage of a small sublanguage at different degrees of sophistication. The system TG/2 described in this paper can be smoothly integrated with deep generation processes, it integrates canned text, templates, and context-free rules into a single formalism, it allows for both textual and tabular output, and it can be parameterized according to linguistic preferences. These features are based on suitably restricted production system techniques and on a generic backtracking regime.
Influence of Heat Treatments on Carotenoid Content of Cherry Tomatoes

Tomatoes and tomato products are rich sources of carotenoids—principally lycopene, followed by β-carotene and lutein. The aim of this work was to study the effect of heat treatment on carotenoid content in cherry tomatoes. Raw and canned products were sampled and analysed; furthermore whole, skin and pulp fractions of cherry tomatoes were analysed when raw and home-processed, in order to better understand heat treatment effects. Lycopene content in canned tomatoes was two-fold higher than in raw tomatoes (11.60 mg/100 g versus 5.12 mg/100 g). Lutein and β-carotene were respectively 0.15 mg/100 g and 0.75 mg/100 g in canned tomatoes versus 0.11 mg/100 g and 1.00 mg/100 g in raw tomatoes. For home-processed tomatoes, β-carotene and lutein showed a content decrease in all thermally treated products. This decrease was more evident for β-carotene in the skin fraction (−17%), while for lutein it was greater in the pulp fraction (−25%). Lycopene presented a different pattern: after heat treatment its concentration increased both in the whole and in pulp fractions, while in the skin fraction it decreased dramatically (−36%). The analysis of the isomers formed during the thermal treatment suggests that lycopene is rather stable inside the tomato matrix.
Improving end-to-end performance of the Web using server volumes and proxy filters

The rapid growth of the World Wide Web has caused serious performance degradation on the Internet. This paper offers an end-to-end approach to improving Web performance by collectively examining the Web components --- clients, proxies, servers, and the network. Our goal is to reduce user-perceived latency and the number of TCP connections, improve cache coherency and cache replacement, and enable prefetching of resources that are likely to be accessed in the near future. In our scheme, server response messages include piggybacked information customized to the requesting proxy. Our enhancement to the existing request-response protocol does not require per-proxy state at a server, and a very small amount of transient per-server state at the proxy, and can be implemented without changes to HTTP 1.1. The server groups related resources into volumes (based on access patterns and the file system's directory structure) and applies a proxy-generated filter (indicating the type of information of interest to the proxy) to tailor the piggyback information. We present efficient data structures for constructing server volumes and applying proxy filters, and a transparent way to perform volume maintenance and piggyback generation at a router along the path between the proxy and the server. We demonstrate the effectiveness of our end-to-end approach by evaluating various volume construction and filtering techniques across a collection of large client and server logs.
Distinct Differentiation Potential of Blood Monocyte Subsets in the Lung1

Peripheral blood monocytes are a population of circulating mononuclear phagocytes that harbor potential to differentiate into macrophages and dendritic cells. As in humans, monocytes in the mouse comprise two phenotypically distinct subsets that are Gr1highCX3CR1int and Gr1lowCX3CR1high, respectively. The question remains whether these populations contribute differentially to the generation of peripheral mononuclear phagocytes. In this study, we track the fate of adoptively transferred, fractionated monocyte subsets in the lung of recipient mice. We show that under inflammatory and noninflammatory conditions, both monocyte subsets give rise to pulmonary dendritic cells. In contrast, under the conditions studied, only Gr1lowCX3CR1high monocytes, but not Gr1highCX3CR1int cells, had the potential to differentiate into lung macrophages. However, Gr1highCX3CR1int monocytes could acquire this potential upon conversion into Gr1lowCX3CR1high cells. Our results therefore indicate an intrinsic dichotomy in the differentiation potential of the two main blood monocyte subsets.
Exciting, radical, suicidal: how brain cells die after stroke.

It is now widely accepted that not all brain cells die immediately after stroke. Surrounding a core of severe and rapid tissue injury, brain cell death evolves more slowly in a heterogeneous area that has been called the penumbra.1,2 In 1977, Astrup et al provided one of the first experimental demonstrations of the penumbra in a baboon model of cerebral artery occlusion.3 This region of brain in acute ischemic stroke was found to be electrically silent but sufficiently active metabolically to sustain membrane potentials. Neurons within the penumbra are functionally impaired but not yet dead. Without reperfusion, the penumbra collapses, brain cells die, and the lesion expands. Although the precise timing and cellular pathways involved are not fully understood, it is believed that mechanisms actively promoting cell death are triggered after stroke. Remarkable progress has been made in dissecting these mechanisms over the past 3 decades. Three major pathways have emerged: excitotoxicity, oxidative stress, and apoptosis, and they are inextricably linked. Here, we explore the notion that stroke is most fruitfully investigated by an integrative “systems biology” approach that encompasses cell death and survival signaling within all components of the neurovascular unit. How do brain cells die after stroke? A large body of data suggest that it may be exciting (glutamate and excitotoxicity), radical (oxidative stress and free radicals), and suicidal (apoptotic-like pathways). 4–6 Simply put, when brain fails to generate sufficient ATP, such as after oxygen and glucose deprivation, energy failure occurs and ionic gradients are lost. Glutamate is released, reuptake processes are impaired, and this excitatory amino acid binds to its postsynaptic receptors and promotes excessive calcium entry and calcium release. Calcium-dependent synthases and proteases contribute to cell and tissue demise by degrading key cytoskeletal and enzymatic proteins, and generating nitric oxide and peroxynitrite. Mitochondrial functions …
Comparison of Continuous-Wave and Micropulse Modulation in Retinal Laser Therapy.

Purpose Recent progress in retinal laser therapy has centered upon using thermal stress below damage threshold or selective destruction of targeted tissue layers as a stimulus for retinal repair. Temporal modulation, including micropulse, is thought to increase the selectivity of laser treatment, but has not been carefully analyzed. We measure and model the tissue response to continuous-wave (CW) and micropulse laser to evaluate the advantages and drawbacks of temporal modulation. Methods Thresholds of ophthalmoscopic visibility, which indicates damage to photoreceptors, and fluorescein angiography (FA), indicating damage to retinal pigment epithelium (RPE), were measured with 577-nm laser in rabbits for duty cycles ranging from 3% to 100% (CW) and pulse envelopes of 20 and 200 ms. Heat shock protein (HSP) expression was measured in rats. Thresholds were compared to a computational model of tissue response based on the Arrhenius integral. Results Damage to photoreceptors was defined by average power, regardless of the duty cycle, as predicted by the model. The average power for FA threshold was lower with 5% duty cycle than with CW laser by 22 ± 15% for 200-ms and 35 ± 21.5% for 20-ms envelopes, demonstrating some heat localization to RPE. The ratio of RPE damage threshold to HSP expression threshold was 1.30 ± 0.15 and 1.39 ± 0.11 for 20 ms at 5% duty cycle and CW, respectively. Conclusions Micropulse modulation with sufficiently short envelope and duty cycle can help reduce the spread of heat from the light-absorbing RPE and choroid. However, this localization does not benefit nondamaging retinal laser therapy, which is intended to avoid any cell death.
An Integrated Approach to Dynamic Analysis of the Ring Spinning Process

The dynamics of the ring spinning process has been re-analyzed as a coupled set of subproblems; the solutions are obtained numerically. The analyses in Part I and II of this series deal with the case of an uncontrolled balloon. In Part I the effects of air drag as well as gravitational and Coriolis accelerations are ignored. In Part II the effects of air drag are included. These analyses differ from the earlier ones in their choice of the relevant boundary conditions; the ones used here are presumed more realistic. Shapes of the spinning balloons are derived from the conditions of dynamic equilibrium of the yam, from pig-tail to wind-point, as well as that of the traveler. Non-dimen sionalization of the problem, is based on two physical lengths, which allows easy comparison of the balloon shapes for widely different dynamic conditions (including collapsed balloons) on the same plot. Tension distributions along the yarn path can be predicted. Similarly, mass of the traveler required for a specified yam tension at the pig-tail can be calculated. Air drag is found to be particularly useful in controlling the shape and size of the balloon. The numerical solution procedures developed can be used to explore the regions of instability of the balloon.
Regulation of contraction and thick filament assembly-disassembly in glycerinated vertebrate smooth muscle cells

Isolated smooth muscle cells and cell fragments prepared by glycerination and subsequent homogenization will contract to one-third their normal length, provided Ca++ and ATP are present. Ca++- independent contraction was obtained by preincubation in Ca++ and ATP gamma S, or by addition of trypsin-treated myosin light chain kinase (MLCK) that no longer requires Ca++ for activation. In the absence of Ca++, myosin was rapidly lost from the cells upon addition of ATP. Glycerol-urea-PAGE gels showed that none of this myosin is phosphorylated. The extent of myosin loss was ATP- and pH-dependent and occurred under conditions similar to those previously reported for the in vitro disassembly of gizzard myosin filaments. Ca++-dependent contraction was restored to extracted cells by addition of gizzard myosin under rigor conditions (i.e., no ATP), followed by addition of MLCK, calmodulin, Ca++, and ATP. Function could also be restored by adding all these proteins in relaxing conditions (i.e., in EGTA and ATP) and then initiating contraction by Ca++ addition. Incubation with skeletal myosin will restore contraction, but this was not Ca++- dependent unless the cells were first incubated in troponin and tropomyosin. These results strengthen the idea that contraction in glycerinated cells and presumably also in intact cells is primarily thick filament regulated via MLCK, that the myosin filaments are unstable in relaxing conditions, and that the spatial information required for cell length change is present in the thin filament- intermediate filament organization.
A Review of the current status of follow - up techniques to study known extrasolar planets

I present a review of observational efforts to study known extrasolar planets by methods that are complementary to the radial velocity technique. I describe the current state of attempts to detect and characterize such planets by astrometry, by reflected light, by thermal emission, by transit photometry, by atmospheric transmission spectroscopy, by planet-induced chromospheric activity, and by long-wavelength radio emission. With a few exceptions,these efforts have yielded only upper limits. Nonetheless, the diversity and vivacity of these pursuits has rapidly pushed many of these techniques into the realm where realistic models of the planets and their atmospheres can now be confronted.
Lipid peroxidation and antioxidant enzyme activities in erythrocytes of type 2 diabetic patients.

BACKGROUND AND OBJECTIVE Although diabetes mellitus (DM) patients are claimed to be under oxidative stress because of prolonged exposure to hyperglycemia, the influence of glycemic control and cardiovascular complication in diabetes on oxidative stress parameters has not been fully studied. The present study aimed to investigate lipid peroxidation end product (malondialdehyde, MDA) and antioxidant enzymes in fairly controlled type 2 DM (fasting plasma glucose [FPG] < or = 180 mg/dl) or type 2 DM complicated with coronary heart disease (CHD) and poorly controlled type 2 DM (FPG > 180 mg/dl) in comparison to a normal healthy group (FPG < 110 mg/dl). MATERIAL AND METHOD MDA and antioxidant enzymes such as superoxide dismutase (SOD), glutathione peroxidase (GPx) and catalase (CAT) were determined in the red cell of 19 subjects with poorly controlled type 2 DM, 26 subjects with fairly controlled type 2 DM and 20 subjects with type 2 DM complicated with CHD who were matched for age and gender. Twenty healthy subjects with normal plasma glucose level and matched for age and gender were served as a control group. In all groups of DM these oxidative stress parameters were compared to a control group by one-way ANOVA test. Pearson rank correlation coefficient was used to compare the relationship between FPG and oxidative stress status in type 2 DM and normal controls. RESULTS The red cell MDA levels were significantly higher in all types of diabetes compared to age-matched normal controls. The mean of red cell MDA level was highest in type 2 DM complicated with CHD. Red cell antioxidant enzyme activities were also significantly increased except for SOD and GPx activities in fairly controlled type 2 DM. The significant positive correlation between oxidative stress status (as MDA and CAT) and FPG was found in poorly controlled type 2 DM and type 2 DM complicated with CHD whereas in fairly controlled type 2 DM the significant positive correlation between CAT and FPG was only observed. CONCLUSION These findings strongly confirmed the evidence that diabetic patients were susceptible to oxidative stress and higher blood glucose level had an association with free radical-mediated lipid peroxidation. The highest level of MDA in type 2 DM complicated with CHD suggested that oxidative stress played an important role in the pathogenesis of cardiovascular complication. The results also showed the increase in antioxidant enzymes. These could probably be due to adaptive response to pro-oxidant in diabetic state. Hence, there seems to be imbalance between oxidant and antioxidant systems in type 2 diabetic patients.
A simpler approach to obtaining an O(1/t) convergence rate for the projected stochastic subgradient method

In this note, we present a new averaging technique for the projected stochastic subgradient method. By using a weighted average with a weight of t+1 for each iterate w_t at iteration t, we obtain the convergence rate of O(1/t) with both an easy proof and an easy implementation. The new scheme is compared empirically to existing techniques, with similar performance behavior.