Miracle-dz/UniFAR-FTUs huggingface dataset:
Metamorphic evolution of a newly identified Mesoproterozoic oceanic slice in the Yuka terrane and its implications for a multi‐cyclic orogenic history of the North Qaidam UHPM belt

The North Qaidam Orogenic Belt (NQOB), lying at the northern margin of the Tibet Plateau, records two orogenic cycles: A Proterozoic cycle related to the amalgamation and breakup of the supercontinent Rodinia, and an Early Palaeozoic cycle including oceanic subduction and continental deep subduction. At present, the only information about the Proterozoic cycle is the concurrent c. 1,000–900 Ma magmatic and metamorphic events, which limited the understanding of the Proterozoic evolution of NQOB and the relationship between the Qaidam Block and other Rodinia fragments. In this study, a kyanite‐bearing eclogite was identified in Yuka terrane. It has positive‐slope chondrite‐normalized rare earth element distribution patterns, similar to present‐day N‐MORB. LA–ICP–MS zircon U–Pb dating obtained a protolith age of 1,273 Ma and an eclogite facies metamorphic age of 437 Ma, which is similar to the continental deep subduction age of the Yuka terrane. Zircon Lu–Hf analysis show that the magmatic zircon cores have high εHf(t) of 8.36–15.98 and TDM1 of 1,450–1,131 Ma (M = 1,303 ± 55 Ma, consistent with its protolith age within error), indicating a juvenile crust protolith of the eclogite. The MORB‐like whole‐rock composition and zircon U–Pb and Lu–Hf analysis indicate that the protolith of the kyanite‐bearing eclogite was a Mesoproterozoic oceanic slice. P–T pseudosection analysis shows that the kyanite‐bearing eclogite experienced four metamorphic stages: (1) a prograde stage with the assemblage garnet+omphacite+talc+lawsonite+phengite+quartz at 22.4–23.2 kbar and 585°C; (2) a peak stage with the assemblage garnet+omphacite+lawsonite+phengite+coesite at 32.5 kbar and 670°C; (3) an early retrograde stage with the assemblage garnet+omphacite+kyanite+phengite+coesite/quartz±lawsonite at 27.1–30.0 kbar and 670–690°C; and (4) a late retrograde stage with the assemblage garnet+omphacite+epidote+hornblende+phengite+quartz at <18.0 kbar. The established clockwise P–T path is similar with other continental‐type eclogites in this area. On the basis of the geochemical and geochronological data, as well as the P–T path, we suggest that the protolith of the kyanite‐bearing eclogite was emplaced in the active margin of the Qaidam Block during the assembly of Rodinia and underwent continental deep subduction in the Early Palaeozoic. We conclude that (1) the Qaidam Block participated in the assembly of the Rodinia supercontinent. It was situated at or proximal to the margin of the supercontinent and probably close to India, east Antarctica and Tarim; and (2) both Mesoproterozoic and Early Palaeozoic oceanic crust slices occur in the NQOB. Thus, special caution is needed when using the metamorphic ages of oceanic affinity eclogites without protolith ages to constrain the evolution history of the North Qaidam UHPM belt.
The preemptive swapping problem on a tree

This article considers the swapping problem on a tree. In this problem at most one object of some type is available at each vertex, and each vertex also requests at most one object of a given type. The total demand and the total supply of each object type are identical. The problem is to determine a minimum cost routing plan starting and ending at a prespecified vertex which is the depot, for a single vehicle of unit capacity and m object types, so that all vertex requests are satisfied. We consider the preemptive mode in which objects may be temporarily dropped along the way. It is shown that this problem is NP‐hard. A heuristic with a worst‐case performance ratio of 1.5 is developed. Finally, it is shown that the case where m = 1 is polynomially solvable. © 2011 Wiley Periodicals, Inc. NETWORKS, 2011
The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation

AUG-stops in the 5′ untranslated regions of Arabidopsis genes, including NIP5;1, which encodes a boron influx transporter, regulate B-dependent mRNA accumulation through ribosome stalling. Upstream open reading frames (uORFs) are often translated ahead of the main ORF of a gene and regulate gene expression, sometimes in a condition-dependent manner, but such a role for the minimum uORF (hereafter referred to as AUG-stop) in living organisms is currently unclear. Here, we show that AUG-stop plays an important role in the boron (B)-dependent regulation of NIP5;1, encoding a boric acid channel required for normal growth under low B conditions in Arabidopsis thaliana. High B enhanced ribosome stalling at AUG-stop, which was accompanied by the suppression of translation and mRNA degradation. This mRNA degradation was promoted by an upstream conserved sequence present near the 5′-edge of the stalled ribosome. Once ribosomes translate a uORF, reinitiation of translation must take place in order for the downstream ORF to be translated. Our results suggest that reinitiation of translation at the downstream NIP5;1 ORF is enhanced under low B conditions. A genome-wide analysis identified two additional B-responsive genes, SKU5 and the transcription factor gene ABS/NGAL1, which were regulated by B-dependent ribosome stalling through AUG-stop. This regulation was reproduced in both plant and animal transient expression and cell-free translation systems. These findings suggest that B-dependent AUG-stop-mediated regulation is common in eukaryotes.
Cognitive ability and personality as predictors of participation in a national colorectal cancer screening programme: the English Longitudinal Study of Ageing

Background The English NHS Bowel Cancer Screening Programme has offered biennial faecal occult blood testing to people aged 60–69 years since 2006, and to those aged 60–74 years since 2010. Analysis of the first 2.6 million screening invitations found that 54% of eligible people took up the invitation. The reasons for this low uptake are unclear. We investigated whether participation in screening varies according to cognitive ability and personality. Methods Participants were members of The English Longitudinal Study of Ageing. In 2010–2011, respondents were asked about participation in bowel cancer screening, and cognitive ability and the ‘Big Five’ personality traits were assessed. Logistic regression was used to examine the cross-sectional relationships between cognitive ability and personality and screening participation in 2681 people aged 60–75 years who were eligible to have been invited to take part in the UK national screening programme for bowel cancer. Results In age-adjusted and sex-adjusted analyses, better cognition and higher conscientiousness were associated with increased participation in cancer screening. ORs (95% CIs) per SD increase were 1.10 (1.03 to 1.18) for cognitive ability and 1.10 (1.01 to 1.19) for conscientiousness. After further adjustment for household wealth and health literacy—shown previously to be associated with participation—these associations were attenuated (ORs were 1.07 (1.00 to 1.15) and 1.07 (0.97 to 1.18), respectively). Conclusions We found some indication that better cognitive function and greater conscientiousness may be linked with a slightly increased likelihood of participation in bowel cancer screening. These relationships need investigation in other cohorts of older people.
MicroRNA181a Is Overexpressed in T-Cell Leukemia/Lymphoma and Related to Chemoresistance

MicroRNAs (miRs) play an important role in tumorogenesis and chemoresistance in lymphoid malignancies. Comparing with reactive hyperplasia, miR181a was overexpressed in 130 patients with T-cell leukemia/lymphoma, including acute T-cell lymphoblastic leukemia (n = 32), T-cell lymphoblastic lymphoma (n = 16), peripheral T-cell lymphoma, not otherwise specified (n = 45), anaplastic large cell lymphoma (n = 15), and angioimmunoblastic T-cell lymphoma (n = 22). Irrespective to histological subtypes, miR181a overexpression was associated with increased AKT phosphorylation. In vitro, ectopic expression of miR181a in HEK-293T cells significantly enhanced cell proliferation, activated AKT, and conferred cell resistance to doxorubicin. Meanwhile, miR181a expression was upregulated in Jurkat cells, along with AKT activation, during exposure to chemotherapeutic agents regularly applied to T-cell leukemia/lymphoma treatment, such as doxorubicin, cyclophosphamide, cytarabine, and cisplatin. Isogenic doxorubicin-resistant Jurkat and H9 cells were subsequently developed, which also presented with miR181a overexpression and cross-resistance to cyclophosphamide and cisplatin. Meanwhile, specific inhibition of miR181a enhanced Jurkat and H9 cell sensitivity to chemotherapeutic agents, further indicating that miR181a was involved in acquired chemoresistance. Collectively, miR181a functioned as a biomarker of T-cell leukemia/lymphoma through modulation of AKT pathway. Related to tumor cell chemoresistance, miR181a could be a potential therapeutic target in treating T-cell malignancies.
Characterization of Invasive and Colonizing Isolates of Streptococcus agalactiae in East African Adults

ABSTRACT Ninety-five colonizing isolates and 74 invasive isolates of Streptococcus agalactiae from Kenyan adults were characterized by using capsular serotyping and multilocus sequence typing. Twenty-two sequence types clustering into five clonal complexes were found. Data support the view that S. agalactiae isolates belonging to a limited number of clonal complexes are invasive in adults worldwide.
Continuous and Overlapping Expression Domains of Odorant Receptor Genes in the Olfactory Epithelium Determine the Dorsal/Ventral Positioning of Glomeruli in the Olfactory Bulb

In mammals, olfactory signals received by odorant receptors (ORs) in the olfactory epithelium (OE) are converted to a topographical map of activated glomeruli in the olfactory bulb (OB). It has been reported that the OE can be divided into four topographically distinct zones and that olfactory sensory neurons (OSNs) expressing a particular OR gene are randomly distributed within one zone. Here, we analyzed 80 different class II OR genes for their expression patterns in the OE by in situ hybridization. It was found that the expression area in the OE does not always fit into one of the four conventional zones. Expression areas are specific to each OR gene and are arranged in an overlapping and continuous manner in the OE. We also analyzed a spatial relationship between the OE and the OB for OSN projection. Our transgenic as well as DiI retrograde staining experiments demonstrated that the dorsal/ventral arrangement of glomeruli in the OB is correlated with the expression areas of corresponding ORs along the dorsomedial/ventrolateral axis in the OE. The present study indicates that the OR gene choice may be more restricted by the OSN location in the OE than what has been thought.
Effects of acid on the larynx of the maturing rabbit and their possible significance to the sudden infant death syndrome

Sudden infant death syndrome (SIDS) has been shown to result from a variety of causes. One group of neonates at high risk for SIDS includes those who develop apnea secondary to gastroesophageal reflux (GER). Reflux has been shown to produce apnea in infants, and aggressive treatment results in significant improvement in symptoms.
Assessment of Motor Control during Three-Dimensional Movements Tracking with Position-Varying Gravity Compensation

Active movements are important in the rehabilitation training for patients with neurological motor disorders, while weight of upper limb impedes movements due to muscles weakness. The objective of this study is to develop a position-varying gravity compensation strategy for a cable-based rehabilitation robot. The control strategy can estimate real-time gravity torque according to position feedback. Then, the performance of this control strategy was compared with the other two kinds of gravity compensation strategies (i.e., without compensation and with fixed compensation) during movements tracking. Seven healthy subjects were invited to conduct tracking tasks along four different directions (i.e., upward, forward, leftward, and rightward). The performance of movements with different compensation strategies was compared in terms of root mean square error (RMSE) between target and actual moving trajectories, normalized jerk score (NJS), mean velocity ratio (MVR) of main motion direction, and the activation of six muscles. The results showed that there were significant effects in control strategies in all four directions with the RMSE and NJS values in the following order: without compensation > fixed compensation > position-varying compensation and MVR values in the following order: without compensation < fixed compensation < position-varying compensation (p < 0.05). Comparing with movements without compensation in all four directions, the activation of muscles during movements with position-varying compensation showed significant reductions, except the activations of triceps and in forward and leftward movements, the activations of upper trapezius and middle parts of deltoid in upward movements and the activations of posterior parts of deltoid in all four directions (p < 0.05). Therefore, with position-varying gravity compensation, the upper limb cable-based rehabilitation robotic system might assist subjects to perform movements with higher quality and improve the participation of robot-aided rehabilitation training. Further studies are needed to explore the effectiveness and clinic application across pathologies.
Conditioned Medium Reconditions Hippocampal Neurons against Kainic Acid Induced Excitotoxicity: An In Vitro Study

Stem cell therapy is gaining attention as a promising treatment option for neurodegenerative diseases. The functional efficacy of grafted cells is a matter of debate and the recent consensus is that the cellular and functional recoveries might be due to “by-stander” effects of grafted cells. In the present study, we investigated the neuroprotective effect of conditioned medium (CM) derived from human embryonic kidney (HEK) cells in a kainic acid (KA) induced hippocampal degeneration model system in in vitro condition. Hippocampal cell line was exposed to KA (200 µM) for 24 hrs (lesion group) whereas, in the treatment group, hippocampal cell line was exposed to KA in combination with HEK-CM (KA + HEK-CM). We observed that KA exposure to cells resulted in significant neuronal loss. Interestingly, HEK-CM cotreatment completely attenuated the excitotoxic effects of KA. In HEK-CM cotreatment group, the cell viability was ~85–95% as opposed to 47% in KA alone group. Further investigation demonstrated that treatment with HEK-CM stimulated the endogenous cell survival factors like brain derived neurotrophic factors (BDNF) and antiapoptotic factor Bcl-2, revealing the possible mechanism of neuroprotection. Our results suggest that HEK-CM protects hippocampal neurons against excitotoxicity by stimulating the host's endogenous cell survival mechanisms.
Sexual Preferences Linked to Rose Taxonomy and Cytology

The genus Rosa is usually subdivided into four subgenera, the largest of these is subgenus Rosa with 10 sections. Most of the genetically analysed rose species appear to be sexual and diploid (2n = 14) or tetraploid (2n = 28) although there are a few triploid (2n = 21), hexaploid (2n = 42) and octaploid species (2n = 56). The diploid species are usually self-incompatible whereas the polyploids are self-fertile. Pollen stainability is usually high in all species with even ploidy levels, i.e. 2x, 4x or 6x. Rose species are usually sexual and have a regular meiosis but there is one deviating section, Caninae, which harbours the so-called dogroses. Most of these are 5x but there are some taxa with 4x and 6x. Only seven chromosomes (derived from seven bivalents) are transmitted through the pollen grains, whereas egg cells contain 21, 28 or 35 chromosomes (derived from seven bivalents and 14, 21 or 28 univalents) depending on the ploidy level. Apomixis occurs occasionally in the dogroses and genetic selfing is probably common since these taxa are self-fertile. Interspecific hybridization takes place spontaneously among rose species at all ploidy levels and is used as a potent tool in plant breeding. Information about compatibility, breeding system, pollen viability, chromosome number and inheritance is important for optimal utilization of crosses in rose breeding
Ribosome-associated peroxiredoxins suppress oxidative stress–induced de novo formation of the [PSI+] prion in yeast

Peroxiredoxins (Prxs) are ubiquitous antioxidants that protect cells against oxidative stress. We show that the yeast Tsa1/Tsa2 Prxs colocalize to ribosomes and function to protect the Sup35 translation termination factor against oxidative stress–induced formation of its heritable [PSI+] prion conformation. In a tsa1 tsa2 [psi-] [PIN+] strain, the frequency of [PSI+] de novo formation is significantly elevated. The Tsa1/Tsa2 Prxs, like other 2-Cys Prxs, have dual activities as peroxidases and chaperones, and we show that the peroxidase activity is required to suppress spontaneous de novo [PSI+] prion formation. Molecular oxygen is required for [PSI+] prion formation as growth under anaerobic conditions prevents prion formation in the tsa1 tsa2 mutant. Conversely, oxidative stress conditions induced by exposure to hydrogen peroxide elevates the rate of de novo [PSI+] prion formation leading to increased suppression of all three termination codons in the tsa1 tsa2 mutant. Altered translational fidelity in [PSI+] strains may provide a mechanism that promotes genetic variation and phenotypic diversity (True HL, Lindquist SL (2000) Nature 407:477–483). In agreement, we find that prion formation provides yeast cells with an adaptive advantage under oxidative stress conditions, as elimination of the [PSI+] prion from tsa1 tsa2 mutants renders the resulting [psi-] [pin-] cells hypersensitive to hydrogen peroxide. These data support a model in which Prxs function to protect the ribosomal machinery against oxidative damage, but when these systems become overwhelmed, [PSI+] prion formation provides a mechanism for uncovering genetic traits that aid survival during oxidative stress conditions.
Morbidity, mortality, and response to treatment by children in the United Kingdom and Ireland with perinatally acquired HIV infection during 1996-2006: planning for teenage and adult care.

BACKGROUND Recent evidence suggests that decreases in morbidity and mortality in cohorts of adults infected with human immunodeficiency virus (HIV) are showing signs of reversal. We describe changes over time in these characteristics and in the response to treatment among children in the United Kingdom and Ireland with perinatally acquired HIV infection, many of whom are now adolescents. METHODS We analyzed prospective cohort data reported to the National Study of HIV in Pregnancy and Childhood (NSHPC) and the Collaborative HIV Paediatric Study. RESULTS By mid 2006, 1441 HIV-infected children were reported to NSHPC; 40% were > or = 10 years old at their most recent follow-up visit, and 34% were receiving care outside London. The proportion of children born abroad increased from 24% during 1994-1996 to 64% during 2003-2006. The percentage of total child time during which children received highly active antiretroviral therapy (HAART) increased from 36% during 1997-1999 to 61% during 2000-2002 and 63% during 2003-2006. Of children who were naive to antiretroviral therapy at the start of HAART, the percentage with an HIV-1 RNA load of < 400 copies/mL after 12 months increased from 52% during 1997-1999 to 79% during 2003-2006. In multivariate analysis, only calendar time predicted virological response, whereas both younger age and lower CD4 cell percentage at HAART initiation predicted increases of > 10% in the CD4 cell percentage. A total of 31% of children aged 5-14 years and 38% aged > or = 15 years at their most recent follow-up visit had been exposed to drugs from each of the 3 main HAART classes. The rate of AIDS and mortality combined decreased from 13.3 cases per 100 person-years before 1997 to 3.1 and 2.5 cases per 100 person-years, respectively, during 2000-2002 and 2003-2006; rates of hospital admission also declined during this interval. Of 18 children known to have died since 2003, 9 died within 1 month after presentation. CONCLUSIONS Morbidity and mortality rates among HIV-infected children continue to decrease over time. Because these children are increasingly dispersed outside London, specialist care is now provided in national clinical networks. Transition pathways to adolescent and adult services and long-term observation to monitor the effects of prolonged exposure to both HIV and HAART are required.
Joint detection of full-frame linear filtering and JPEG compression in digital images

Image forensics aims at detecting clues regarding the history of a digital image. However, many forensic techniques present some limitations in real life scenarios, where the application of post-processing operators may alter the characteristic footprints exploited by forensic tools. In this paper we study the combination of JPEG compression and full-frame linear filtering, analyzing their impact on the statistical distribution of the Discrete Cosine Transform (DCT) coefficients of the image. We extract characteristic features from the DCT distributions and build an effective classifier able to jointly disclose the applied compression quality factor and the filter kernel. The proposed technique is computationally efficient and effective, as demonstrated by the extensive experimental analysis.
Scalable knowledge harvesting with high precision and high recall

Harvesting relational facts from Web sources has received great attention for automatically constructing large knowledge bases. Stateof-the-art approaches combine pattern-based gathering of fact candidates with constraint-based reasoning. However, they still face major challenges regarding the trade-offs between precision, recall, and scalability. Techniques that scale well are susceptible to noisy patterns that degrade precision, while techniques that employ deep reasoning for high precision cannot cope with Web-scale data. This paper presents a scalable system, called PROSPERA, for high-quality knowledge harvesting. We propose a new notion of ngram-itemsets for richer patterns, and use MaxSat-based constraint reasoning on both the quality of patterns and the validity of fact candidates.We compute pattern-occurrence statistics for two benefits: they serve to prune the hypotheses space and to derive informative weights of clauses for the reasoner. The paper shows how to incorporate these building blocks into a scalable architecture that can parallelize all phases on a Hadoop-based distributed platform. Our experiments with the ClueWeb09 corpus include comparisons to the recent ReadTheWeb experiment. We substantially outperform these prior results in terms of recall, with the same precision, while having low run-times.