Miracle-dz/UniFAR-FTUs huggingface dataset:
The influence of horseback riding training on the physical function and psychological problems of stroke patients

[Purpose] The purpose of this study was to determine the influence of horseback riding training on the physical function and psychological problems of stroke patients. [Subjects and Methods] Thirty stroke patients were divided evenly into an experimental group and a control group. Both groups carried out neurodevelopmental treatment. The experimental group additionally performed mechanical horseback riding training for 30 minutes a day, 5 days a week, for 6 weeks. Physical function was evaluated using the Berg Balance Scale (BBS) and the Timed Up and Go Test (TUGT). Psychological problems were assessed using the Beck Depression Inventory (BDI). In order to compare differences within groups between before and after the experiment, the paired t test was conducted. In order to compare differences between groups before and after the experiment, the independent t test was conducted. [Results] In the experimental group, the BBS, TUGT, and BDI showed significant improvements after the intervention. The experimental group’s BBS, TUGT, and BDI post-intervention changes were significantly better than those observed in the control group. [Conclusion] According to our results, horseback riding training has a positive effect on the physical function and psychological problems of stroke patients.
Characterizations of Highly Expressed Genes of Four Fast-Growing Bacteria

ABSTRACT Predicted highly expressed (PHX) genes are characterized for the completely sequenced genomes of the four fast-growing bacteriaEscherichia coli,Haemophilus influenzae, Vibrio cholerae, and Bacillus subtilis. Our approach to ascertaining gene expression levels relates to codon usage differences among certain gene classes: the collection of all genes (average gene), the ensemble of ribosomal protein genes, major translation/transcription processing factors, and genes for polypeptides of chaperone/degradation complexes. A gene is predicted highly expressed (PHX) if its codon frequencies are close to those of the ribosomal proteins, major translation/transcription processing factor, and chaperone/degradation standards but strongly deviant from the average gene codon frequencies. PHX genes identified by their codon usage frequencies among prokaryotic genomes commonly include those for ribosomal proteins, major transcription/translation processing factors (several occurring in multiple copies), and major chaperone/degradation proteins. Also PHX genes generally include those encoding enzymes of essential energy metabolism pathways of glycolysis, pyruvate oxidation, and respiration (aerobic and anaerobic), genes of fatty acid biosynthesis, and the principal genes of amino acid and nucleotide biosyntheses. Gene classes generally not PHX include most repair protein genes, virtually all vitamin biosynthesis genes, genes of two-component sensor systems, most regulatory genes, and most genes expressed in stationary phase or during starvation. Members of the set of PHX aminoacyl-tRNA synthetase genes contrast sharply between genomes. There are also subtle differences among the PHX energy metabolism genes between E. coli andB. subtilis, particularly with respect to genes of the tricarboxylic acid cycle. The good agreement of PHX genes of E. coli and B. subtiliswith high protein abundances, as assessed by two-dimensional gel determination, is verified. Relationships of PHX genes with stoichiometry, multifunctionality, and operon structures are also examined. The spatial distribution of PHX genes within each genome reveals clusters and significantly long regions without PHX genes.
Exchange Factor EFA6R Requires C-terminal Targeting to the Plasma Membrane to Promote Cytoskeletal Rearrangement through the Activation of ADP-ribosylation Factor 6 (ARF6)*

Background: The subcellular localization and cellular functions of EFA6R are unknown. Results: EFA6R requires dual targeting through the PH and CC domains to localize to the plasma membrane and function as a GEF. Conclusion: Plasma membrane-localized EFA6R stimulates actin reorganization through ARF6 activation. Significance: This study provides insight into the localization and cellular functions of EFA6R. ADP-ribosylation factor 6 (ARF6) small GTPase regulates membrane trafficking and cytoskeleton rearrangements at the plasma membrane (PM) by cycling between the GTP-bound active and GDP-bound inactive conformations. Guanine nucleotide exchange factors (GEFs) activate ARF6. The exchange factor for ARF6 (EFA6) R has been identified as a biomarker for ovarian cancer. EFA6R shares the catalytic Sec7, pleckstrin homology (PH), and coiled coil (CC) domains of the other EFA6 family GEFs. Here we report the functional characterization of EFA6R. Endogenous EFA6R was present in the plasma membrane fraction. The exogenously expressed FLAG- and GFP-tagged EFA6R were targeted to the PM. In vitro, GFP-EFA6R associated weakly but preferentially with phosphatidylinositol 4,5-bisphosphate (PIP2) through the PH domain. EFA6R required both its PH and CC domains localized at the C terminus to target the PM. Consistent with this, EFA6R lacking the CC domain (EFA6RΔCC) was released from the PM into the cytosol upon PIP2 depletion, whereas EFA6R release from the PM required both PIP2 depletion and actin destabilization. These results suggest that the dual targeting via the PH and CC domains is important for the PM localization of EFA6R. EFA6R specifically catalyzed the GTP loading of ARF6 in mammalian cells. Moreover, EFA6R regulated ARF6 localization and thereby actin stress fiber loss. The GEF activity of EFA6R was dependent on the presence of the Sec7 domain. The PH and CC domains were also required for the in vivo GEF activity of EFA6R but could be functionally replaced by the CAAX motif of K-Ras, suggesting a role for these domains in the membrane targeting of EFA6R.
Collapse Tests on Externally Pressurized Toroids

The paper discusses the load-carrying capacity of toroidal shells with closed circular cross section and loaded by static external pressure. Details about the manufacturing, pre-experiment measurements and testing of three, nominally different, steel toroids are provided. Two of them were manufactured from mild steel by spinning two halves and then welding them around the inner and outer equatorial perimeters. The third one has been assembled by welding four 90-deg stainless elbows. The outer diameter of these models was about 300 mm and the wall thickness varied from 2.0 to 3.0 mm. The hoop radius-to-thickness ratio, r/t, varied from about 15 to 30. The experimental collapse pressures were in the range from 4 to 8 MPa. Comparisons with numerical results are also provided.
Bioengineered human myobundles mimic clinical responses of skeletal muscle to drugs

Existing in vitro models of human skeletal muscle cannot recapitulate the organization and function of native muscle, limiting their use in physiological and pharmacological studies. Here, we demonstrate engineering of electrically and chemically responsive, contractile human muscle tissues (‘myobundles’) using primary myogenic cells. These biomimetic constructs exhibit aligned architecture, multinucleated and striated myofibers, and a Pax7+ cell pool. They contract spontaneously and respond to electrical stimuli with twitch and tetanic contractions. Positive correlation between contractile force and GCaMP6-reported calcium responses enables non-invasive tracking of myobundle function and drug response. During culture, myobundles maintain functional acetylcholine receptors and structurally and functionally mature, evidenced by increased myofiber diameter and improved calcium handling and contractile strength. In response to diversely acting drugs, myobundles undergo dose-dependent hypertrophy or toxic myopathy similar to clinical outcomes. Human myobundles provide an enabling platform for predictive drug and toxicology screening and development of novel therapeutics for muscle-related disorders. DOI: http://dx.doi. org/10.7554/eLife.04885. 001
Atp-Dependent Adenophostin Activation of Inositol 1,4,5-Trisphosphate Receptor Channel Gating

The inositol 1,4,5-trisphosphate (InsP3) receptor (InsP3R) is a ligand-gated intracellular Ca2+ release channel that plays a central role in modulating cytoplasmic free Ca2+ concentration ([Ca2+]i). The fungal metabolite adenophostin A (AdA) is a potent agonist of the InsP3R that is structurally different from InsP3 and elicits distinct calcium signals in cells. We have investigated the effects of AdA and its analogues on single-channel activities of the InsP3R in the outer membrane of isolated Xenopus laevis oocyte nuclei. InsP3R activated by either AdA or InsP3 have identical channel conductance properties. Furthermore, AdA, like InsP3, activates the channel by tuning Ca2+ inhibition of gating. However, gating of the AdA-liganded InsP3R has a critical dependence on cytoplasmic ATP free acid concentration not observed for InsP3-liganded channels. Channel gating activated by AdA is indistinguishable from that elicited by InsP3 in the presence of 0.5 mM ATP, although the functional affinity of the channel is 60-fold higher for AdA. However, in the absence of ATP, gating kinetics of AdA-liganded InsP3R were very different. Channel open time was reduced by 50%, resulting in substantially lower maximum open probability than channels activated by AdA in the presence of ATP, or by InsP3 in the presence or absence of ATP. Also, the higher functional affinity of InsP3R for AdA than for InsP3 is nearly abolished in the absence of ATP. Low affinity AdA analogues furanophostin and ribophostin activated InsP3R channels with gating properties similar to those of AdA. These results provide novel insights for interpretations of observed effects of AdA on calcium signaling, including the mechanisms that determine the durations of elementary Ca2+ release events in cells. Comparisons of single-channel gating kinetics of the InsP3R activated by InsP3, AdA, and its analogues also identify molecular elements in InsP3R ligands that contribute to binding and activation of channel gating.
Energy-efficient high-voltage compliant implantable brain-machine interfaces

We present in this paper the architecture of an energy-efficient high-voltage compliant microstimulator and recording interface dedicated for intracortical visual prosthesis. The system consists of a capacitive-link based bidirectional transceiver, an inductive-link energy recovery unit, a flexible microstimulation module including a high-impedance microelectrode driver, and a recording interface based on an ultra-low power analog-to-digital converter. Two different technologies, IBM CMOS 0. 13μm, and DALSA Teledyne 0. 8μm 5V/20V CMOS/DMOS, are used to implement the device in 2 chips. The microelectrode driver is incorporated with an array of highly-configurable high-voltage switches, which are supplied with ±13 Volts. The measurement results show that the system delivers up to 180μA through emulated microelectrode-tissue interface impedance with an average value of 100kΩ. The measured static power consumption of the high-voltage chip is 0.735mW.
Panorama: capturing system-wide information flow for malware detection and analysis

Malicious programs spy on users' behavior and compromise their privacy. Even software from reputable vendors, such as Google Desktop and Sony DRM media player, may perform undesirable actions. Unfortunately, existing techniques for detecting malware and analyzing unknown code samples are insufficient and have significant shortcomings. We observe that malicious information access and processing behavior is the fundamental trait of numerous malware categories breaching users' privacy (including keyloggers, password thieves, network sniffers, stealth backdoors, spyware and rootkits), which separates these malicious applications from benign software. We propose a system, Panorama, to detect and analyze malware by capturing this fundamental trait. In our extensive experiments, Panorama successfully detected all the malware samples and had very few false positives. Furthermore, by using Google Desktop as a case study, we show that our system can accurately capture its information access and processing behavior, and we can confirm that it does send back sensitive information to remote servers in certain settings. We believe that a system such as Panorama will offer indispensable assistance to code analysts and malware researchers by enabling them to quickly comprehend the behavior and innerworkings of an unknown sample.
On the tear proteome of the house mouse (Mus musculus musculus) in relation to chemical signalling

Mammalian tears are produced by lacrimal glands to protect eyes and may function in chemical communication and immunity. Recent studies on the house mouse chemical signalling revealed that major urinary proteins (MUPs) are not individually unique in Mus musculus musculus. This fact stimulated us to look for other sexually dimorphic proteins that may—in combination with MUPs—contribute to a pool of chemical signals in tears. MUPs and other lipocalins including odorant binding proteins (OBPs) have the capacity to selectively transport volatile organic compounds (VOCs) in their eight-stranded beta barrel, thus we have generated the tear proteome of the house mouse to detect a wider pool of proteins that may be involved in chemical signalling. We have detected significant male-biased (7.8%) and female-biased (7%) proteins in tears. Those proteins that showed the most elevated sexual dimorphisms were highly expressed and belong to MUP, OBP, ESP (i.e., exocrine gland-secreted peptides), and SCGB/ABP (i.e., secretoglobin) families. Thus, tears may have the potential to elicit sex-specific signals in combination by different proteins. Some tear lipocalins are not sexually dimorphic—with MUP20/darcin and OBP6 being good examples—and because all proteins may flow with tears through nasolacrimal ducts to nasal and oral cavities we suggest that their roles are wider than originally thought. Also, we have also detected several sexually dimorphic bactericidal proteins, thus further supporting an idea that males and females may have adopted alternative strategies in controlling microbiota thus yielding different VOC profiles.
EGFR Mutations in Indian Lung Cancer Patients: Clinical Correlation and Outcome to EGFR Targeted Therapy

Screening for EGFR mutation is a key molecular test for management of lung cancer patients. Outcome of patients with mutation receiving EGFR tyrosine kinase inhibitor is known to be better across different ethnic populations. However, frequency of EGFR mutations and the clinical response in most other ethnic populations, including India, remains to be explored. We conducted a retrospective analysis of Indian lung cancer patients who were managed with oral tyrosine kinase inhibitors. Majority of the patients in the study had adenocarcinoma and were non-smokers. 39/111 patients tested positive for EGFR kinase domain mutations determined by Taqman based real time PCR. The overall response to oral TKI therapy was 30%. Patients with an activating mutation of EGFR had a response rate of 74%, while the response rate in patients with wild type EGFR was 5%, which was a statistically significant difference. Progression free survival of patients with EGFR mutations was 10 months compared to 2 months for EGFR mutation negative patients. Overall survival was 19 months for EGFR mutation patients and 13 months for mutation negative patients. This study emphasizes EGFR mutation as an important predictive marker for response to oral tyrosine kinase inhibitors in the Indian population.
MITOCHONDRIA OF PROTOZOA

A study of thin sections of Paramecium multimicronucleatum, Tetrahymena pyriformis, Tokophrya infusionum, and Amoeba proteus shows that the mitochondria in all these protozoa are similar in certain aspects of their fine structure to that described in metazoan cells. As in higher organisms the mitochondrion is surrounded by a double limiting membrane and contains protrusions directed inward from the innermost of the double membranes. There are, however, some differences. In a majority of higher organisms the internal structure of mitochondria consists of ridges or cristae mitochondriales and in a few instances only of finger-like projections, or microvilli. In all protozoa described here and elsewhere microvilli represent the dominant structure. They are characteristic therefore of protozoan mitochondria.
Risk factors associated with arterial hypertension in adolescents.

OBJECTIVE To investigate the risk factors associated with essential arterial hypertension in adolescents. METHOD A case-control, outpatient-based study of adolescents aged 11 to 19 years treated at the Center for Studies into Adolescent Health (Núcleo de Estudos da Saúde do Adolescente) at the Universidade Estadual do Rio de Janeiro. Nutritional status was assessed by means of body mass index. Data were also obtained on waist circumference, height, family history of arterial hypertension, birth weight and pubertal development. The analysis was performed using unconditional logistic regression. RESULTS The study investigated 91 cases and 182 controls. Body mass index was associated with hypertension. Height had a positive association with hypertension only among the girls. There was no evidence of an association between pubertal development or birth weight with arterial hypertension in adolescence. In contrast, family history, particularly when both parents had hypertension, exhibited a robust association, both among the boys (OR = 13.32; 95%CI 2.25-78.94), and the girls (OR = 11.35; 95%CI 1.42-90.21). CONCLUSIONS In our study, overweight, obesity and family history of hypertension (father and mother with hypertension) were the principal risk factors for arterial hypertension in adolescents.
A hybrid type system for lock-freedom of mobile processes

We propose a type system for lock-freedom in the π-calculus, which guarantees that certain communications will eventually succeed. Distinguishing features of our type system are: it can verify lock-freedom of concurrent programs that have sophisticated recursive communication structures; it can be fully automated; it is hybrid, in that it combines a type system for lock-freedom with local reasoning about deadlock-freedom, termination, and confluence analyses. Moreover, the type system is parameterized by deadlock-freedom/termination/confluence analyses, so that any methods (e.g. type systems and model checking) can be used for those analyses. A lock-freedom analysis tool has been implemented based on the proposed type system, and tested for nontrivial programs.
Histology and affinity of anaspids, and the early evolution of the vertebrate dermal skeleton

The assembly of the gnathostome bodyplan constitutes a formative episode in vertebrate evolutionary history, an interval in which the mineralized skeleton and its canonical suite of cell and tissue types originated. Fossil jawless fishes, assigned to the gnathostome stem-lineage, provide an unparalleled insight into the origin and evolution of the skeleton, hindered only by uncertainty over the phylogenetic position and evolutionary significance of key clades. Chief among these are the jawless anaspids, whose skeletal composition, a rich source of phylogenetic information, is poorly characterized. Here we survey the histology of representatives spanning anaspid diversity and infer their generalized skeletal architecture. The anaspid dermal skeleton is composed of odontodes comprising spheritic dentine and enameloid, overlying a basal layer of acellular parallel fibre bone containing an extensive shallow canal network. A recoded and revised phylogenetic analysis using equal and implied weights parsimony resolves anaspids as monophyletic, nested among stem-gnathostomes. Our results suggest the anaspid dermal skeleton is a degenerate derivative of a histologically more complex ancestral vertebrate skeleton, rather than reflecting primitive simplicity. Hypotheses that anaspids are ancestral skeletonizing lampreys, or a derived lineage of jawless vertebrates with paired fins, are rejected.
Use of array-based technology in the practice of medical genetics

Disclaimer: This guideline is designed primarily as an educational resource for health care providers to help them provide quality medical genetic services. Adherence to this guideline does not necessarily ensure a successful medical outcome. This guideline should not be considered inclusive of all proper procedures and tests or exclusive of other procedures and tests that are reasonably directed to obtaining the same results. In determining the propriety of any specific procedure or test, the geneticist should apply his or her own professional judgment to the specific clinical circumstances presented by the individual patient or specimen. It may be prudent, however, to document in the patient's record the rationale for any significant deviation from this guideline.
Lipoprotein Receptors and Lipid Enzymes in Hepatitis C Virus Entry and Early Steps of Infection

Viruses are obligate intracellular agents that depend on host cells for successful propagation, hijacking cellular machineries to their own profit. The molecular interplay between host factors and invading viruses is a continuous coevolutionary process that determines viral host range and pathogenesis. The hepatitis C virus (HCV) is a strictly human pathogen, causing chronic liver injuries accompanied by lipid disorders. Upon infection, in addition to protein-protein and protein-RNA interactions usual for such a positive-strand RNA virus, HCV relies on protein-lipid interactions at multiple steps of its life cycle to establish persistent infection, making use of hepatic lipid pathways. This paper focuses on lipoproteins in HCV entry and on receptors and enzymes involved in lipid metabolism that HCV exploits to enter hepatocytes.
Predicting the Material Removal in Polishing: The Applicability of Two Types of Statistical Models

This article develops two statistical rough surface models to investigate the material removal rate in surface polishing. Model I implies that the contact between two surfaces is equivalent to that between a composite surface and a plane; but Model II is without the equivalent surface concept. The prediction differences of the two models were first investigated with the aid of contact mechanics. The analysis shows that the relative error of the predictions by the two models could be minimized by considering the interactions between asperities, and that this error increases with the separation of the mean planes, but decreases with the asperity density, asperity radius and standard deviation of the asperity height. By extending the models to study the material removal rate in polishing, it was found that asperity interaction is an important factor in a statistical modelling of polishing, and that with a given separation of the reference planes of the pad and workpiece surfaces, the material removal rate increases with the volume concentration of abrasive particles and varies with the pad roughness. The study also showed that the microstructure of a polishing pad has a significant effect on the material removal rate of a polishing.
Effects of DOF separation on elastic devices for the navigation in 3D virtual environments with force feedback

We investigated the use of a new haptic device called DigiHaptic in a 3D navigation task. Unlike other devices intended to interact in 3D with one end-effector, the DigiHaptic has three levers that the user may handle simultaneously or not in elastic mode to rate control objects. We compared it to the SpaceMouse-another elastic device - to evaluate the influence that degrees of freedom (DOF) separation and force feedback have in terms of accuracy (errors) and speed (time) in a 3D navigation task. We found that users performed the task with the same amount of time on both devices but that DOF separation increases the control accuracy of the camera.