Miracle-dz/UniFAR-FTUs huggingface dataset:
Three-Stage Model for Slider-Reefed Parafoil Inflation ##

This paper discusses the definition and validation of an upgraded model of slider-reefed parafoil inflation. Unlike an early version which focused only on the slider-descent phase, this improved model incorporates the dynamics of the all-important slider-up phase which precedes slider-descent. The model is “dynamical” in that it involves a physical description of the cell inflation process and corresponding parachute drag area expansion. The upgrade is also detailed enough to require over 15 input parameters describing the deployment conditions, canopy dimensions, and most importantly, slider dimensions and drag characteristics. The simulation outputs not only include the evolutions of the drag force and parachute-payload descent rate, but also the actual duration of the slider-up stage. The model can be applied to both sail-slider and pilot chutecontrolled slider configurations, but not to sliders that are physically and temporarily attached to the wing during the early phases of inflation. It will be shown that simulations are the most accurate for canopy-slider designs that have been “tuned” to reduce surging.
Endoplasmic Reticulum-Localized Human Papillomavirus Type 16 E5 Protein Alters Endosomal pH but Not trans-Golgi pH

ABSTRACT The human papillomavirus type 16 (HPV-16) E5 protein is a small, hydrophobic polypeptide that is expressed in virus-infected keratinocytes and alters receptor signaling pathways, apoptotic responses, and endosomal pH. Despite its ability to inhibit endosomal acidification, the HPV-16 E5 protein is found predominantly in the endoplasmic reticulum (ER), suggesting that its effect may be indirect and perhaps global. To determine whether E5 alters the pHs of additional intracellular compartments, we transduced human keratinocytes with a codon-optimized E5 vector and then quantified endosomal and trans-Golgi pHs using sensitive, compartment-specific, ratiometric pHluorin constructs. E5 protein increased endosomal pH from 5.9 to 6.9 but did not affect the normal trans-Golgi pH of 6.3. Confirming the lack of alteration in trans-Golgi pH, we observed no alterations in the acidification-dependent processing of the proH3 protein. C-terminal deletions of E5, which retained normal expression and localization in the ER, were defective for endosomal alkalization. Thus, E5 does not uniformly alkalinize intracellular compartments, and its C-terminal 10 amino acids appear to mediate interactions with critical ER targets that modulate proton pump function and/or localization.
The siRNA-mediated knockdown of GluN3A in 46C-derived neural stem cells affects mRNA expression levels of neural genes, including known iGluR interactors

For years, GluN3A was solely considered to be a dominant-negative modulator of NMDARs, since its incorporation into receptors alters hallmark features of conventional NMDARs composed of GluN1/GluN2 subunits. Only recently, increasing evidence has accumulated that GluN3A plays a more diversified role. It is considered to be critically involved in the maturation of glutamatergic synapses, and it might act as a molecular brake to prevent premature synaptic strengthening. Its expression pattern supports a putative role during neural development, since GluN3A is predominantly expressed in early pre- and postnatal stages. In this study, we used RNA interference to efficiently knock down GluN3A in 46C-derived neural stem cells (NSCs) both at the mRNA and at the protein level. Global gene expression profiling upon GluN3A knockdown revealed significantly altered expression of a multitude of neural genes, including genes encoding small GTPases, retinal proteins, and cytoskeletal proteins, some of which have been previously shown to interact with GluN3A or other iGluR subunits. Canonical pathway enrichment studies point at important roles of GluN3A affecting key cellular pathways involved in cell growth, proliferation, motility, and survival, such as the mTOR pathway. This study for the first time provides insights into transcriptome changes upon the specific knockdown of an NMDAR subunit in NSCs, which may help to identify additional functions and downstream pathways of GluN3A and GluN3A-containing NMDARs.
The effect of fluid overload on sleep apnoea severity in haemodialysis patients

As in heart failure, obstructive and central sleep apnoea (OSA and CSA, respectively) are common in end-stage renal disease. Fluid overload characterises end-stage renal disease and heart failure, and in heart failure plays a role in the pathogenesis of OSA and CSA. We postulated that in end-stage renal disease patients, those with sleep apnoea would have greater fluid volume overload than those without. End-stage renal disease patients on thrice-weekly haemodialysis underwent overnight polysomnography on a nondialysis day to determine their apnoea–hypopnoea index (AHI). Extracellular fluid volume of the total body, neck, thorax and right leg were measured using bioelectrical impedance. 28 patients had an AHI ≥15 (sleep apnoea group; OSA:CSA 21:7) and 12 had an AHI <15 (no sleep apnoea group). Total body extracellular fluid volume was 2.6 L greater in the sleep apnoea group than in the no sleep apnoea group (p=0.006). Neck, thorax, and leg fluid volumes were also greater in the sleep apnoea than the no sleep apnoea group (p<0.05), despite no difference in body mass index (p=0.165). These findings support a role for fluid overload in the pathogenesis of both OSA and CSA in end-stage renal disease. Fluid overload plays a key role in the pathogenesis of OSA and CSA in end-stage renal disease http://ow.ly/zSZo308a8TP
Ultrasonographic ovarian dynamic, plasma progesterone, and non-esterified fatty acids in lame postpartum dairy cows

The objective of this study was to compare ovulation rate, number of large ovarian follicles, and concentrations of plasma progesterone (P4) and non-esterified fatty acids (NEFA) between lame (n = 10) and non-lame (n = 10) lactating Holstein cows. The study was conducted in an organic dairy farm, and cows were evaluated by undertaking ultrasonography and blood sampling every 3 days from 30 days postpartum for a period of 34 days. Cows which became lame during the first 30 days postpartum experienced a lower ovulation rate determined by the presence of a corpus luteum (50% presence for lame cows and 100% for non-lame cows, p ≤ 0.05). The number of large ovarian follicles in the ovaries was 5 for lame cows and 7 for non-lame cows (p = 0.09). Compared to non-lame cows, lame cows had significantly lower (p ≤ 0.05) concentrations of plasma P4. Furthermore, NEFA concentrations were lower (p ≤ 0.05) in lame cows than in non-lame cows. It is concluded that lameness in postpartum dairy cows is associated with ovulation failure and lower concentrations of P4 and NEFA.
On the identification of paedomorphic and overwintering larval newts based on cloacal shape: review and guidelines

Abstract Paedomorphosis is an alternative process to metamorphosis in which adults retain larval traits at the adult stage. It is frequent in newts and salamanders, where larvae reach sexual maturity without losing their gills. However, in some populations, larvae overwinter in water, while remaining immature. These alternative ontogenetic processes are of particular interest in various research fields, but have different causes and consequences, as only paedomorphosis allows metamorphosis to be bypassed before maturity. It is thus relevant to efficiently identify paedomorphs versus overwintering larvae. In this context, the aim of this article was 3-fold: firstly, to perform a meta-analysis of the identification procedures carried out in the literature; secondly, to determine the effectiveness of body size to make inferences about adulthood by surveying natural newt populations of Lissotriton helveticus and Ichthyosaura alpestris, and thirdly, to propose easy guidelines for an accurate distinction between large larvae and paedomorphs based on an external sexual trait, which is essential for reproduction—the cloaca. More than half of the studies in the literature do not mention the diagnostic criteria used for determining adulthood. The criteria mentioned were the presence of mature gonads (10%), eggs laid (4%), courtship behavior (10%), and external morphological sexual traits (39%) including the cloaca (24%). Body-size thresholds should not be used as a proxy for paedomorphosis, because overwintering larvae can reach a larger size than paedomorphs within the same populations. In contrast, diagnosis based on cloacal external morphology is recommended, as it can be processed by the rapid visual assessment of all caught specimens, thus providing straightforward data at the individual level for both sexes.
Does woodland condition influence the diversity and abundance of small mammal communities

Loss of mammal species in Australia in the last 200 years has been attributed to many factors including habitat removal and altered fire regimes. Decline in tree condition could contribute further to the ongoing decline of mammals. Eucalyptus wandoo trees are currently undergoing a decline in condition that can result in a loss of canopy and other changes to the habitat. This paper examines the relationships between E. wandoo tree condition, habitat characteristics and small mammal species richness and abundance. Live-capture trapping was conducted at 24 E. wandoo sites at Dryandra State Forest and Wandoo Conservation Park, Western Australia. Condition and microhabitat variables of E. wandoo were recorded for each site. Generalised additive mixed models revealed a range of habitat and tree condition characteristics that influenced small mammal abundance and species richness, including site litter cover, crown dieback, understorey vegetation cover and tree density. The availability of coarse woody debris played a large role in explaining the abundance of Cercartetus concinnus and Antechinus flavipes, along with other microhabitat and tree condition variables, such as tree leaf litter and crown dieback. Epicormic growth, crown density and the distance to the drift fence from E. wandoo trees were the common variables in the best model for the abundance of Sminthopsis griseoventer. The decline in condition of E. wandoo and the subsequent modifications to the microhabitat are correlated with changes in the small mammal community. A better understanding of how the decline of E. wandoo impacts small mammal communities could improve management practices in E. wandoo woodlands.
Wushenziye Formula Improves Skeletal Muscle Insulin Resistance in Type 2 Diabetes Mellitus via PTP1B-IRS1-Akt-GLUT4 Signaling Pathway

Background. Wushenziye formula (WSZYF) is an effective traditional Chinese medicine in the treatment of type 2 diabetes mellitus (T2DM). Aim. This study aimed to identify the effects and underlying mechanisms of WSZYF on improving skeletal muscle insulin resistance in T2DM. Methods. An animal model of T2DM was induced by Goto-Kakizaki diabetes prone rats fed with high fat and sugar for 4 weeks. Insulin resistance model was induced in skeletal muscle cell. Results. In vivo, WSZYF improved general conditions and decreased significantly fasting blood glucose, glycosylated serum protein, glycosylated hemoglobin, insulin concentration, and insulin resistance index of T2DM rats. In vitro, WSZYF enhanced glucose consumption in insulin resistance model of skeletal muscle cell. Furthermore, WSZYF affected the expressions of molecules in regulating T2DM, including increasing the expressions of p-IRS1, p-Akt, and GLUT4, reducing PTP1B expression. Conclusion. These findings displayed the potential of WSZYF as a new drug candidate in the treatment of T2DM and the antidiabetic mechanism of WSZYF is probably mediated through modulating the PTP1B-IRS1-Akt-GLUT4 signaling pathway.
Grasp Representations Depend on Knowledge and Attention

Seeing pictures of objects activates the motor cortex and can have an influence on subsequent grasping actions. However, the exact nature of the motor representations evoked by these pictures is unclear. For example, action plans engaged by pictures could be most affected by direct visual input and computed online based on object shape. Alternatively, action plans could be influenced by experience seeing and grasping these objects. We provide evidence for a dual-route theory of action representations evoked by pictures of objects, suggesting that these representations are influenced by both direct visual input and stored knowledge. We find that that familiarity with objects has a facilitative effect on grasping actions, with knowledge about the object’s canonical orientation or its name speeding grasping actions for familiar objects compared to novel objects. Furthermore, the strength of contributions from each route to action can be modulated by the manner in which the objects are attended. Thus, evocation of grasping representations depends on an interaction between one’s familiarity with perceived objects and how those objects are attended while making grasp actions.
Effect of Finishing and Polishing on the Surface Roughness and Gloss of Feldspathic Ceramic for Chairside CAD/CAM Systems.

OBJECTIVES To evaluate surface roughness and gloss of feldspathic ceramic blocks for chairside CAD/CAM systems before and after finishing and polishing. METHODS VITA Mark II ceramic blocks for the CEREC CAD/CAM system were cut perpendicularly in order to obtain a total of 70 specimens (14 × 18 × 3 mm). The flat surface was roughened using a grinder/polisher with dry 120-grit silicone-carbide paper. Surface roughness and gloss were measured using a digital profilometer (Ra) and a glossmeter (GU), respectively. Specimens were randomly divided into seven groups (n=10) based on the finishing/polishing system as follows: 1) Identoflex NGPorcelain Polisher (INP), 2) Identoflex Diamond Ceramic Polisher (IDP), 3) Hiluster Polishing System (HPS), 4) OptraFine (OF), 5) Identoflex Lucent (IL), 6) VITA Akzent Glaze Spray (AGS), and 7) VITA Shading Paste and Liquid (SPL). Surface analysis was repeated after the finishing/polishing treatment, and the obtained data were compared to the baseline in order to evaluate the ΔRa and ΔGU. Results were statistically analyzed. The surface morphology was observed by scanning electron microscopy. RESULTS The mean surface roughness of polished systems increased in the order (statistical groups designated) SPLa < ILa < OFab < IDPbc < AGSbc < INPbc < HPSc and mean gloss decreased in the order AGSa > SPLa > OFab > ILabc > HPSbcd > INPcd > IDPd. CONCLUSIONS The smoothest surface of CAD/CAM feldspathic ceramic blocks was achieved using the furnace-based glaze systems VITA Akzent Glaze Spray and VITA Shading Paste and Liquid and manual systems Identoflex Lucent and OptraFine.
Plasma Levels of Rifampin Correlate with the Tuberculosis Drug Activity Assay

ABSTRACT The plasma tuberculosis drug activity (TDA) assay may be an alternative tool for therapeutic drug monitoring in resource-limited settings. In tuberculosis (TB) patients (n = 30), TDA and plasma levels of first-line drugs were analyzed 2 h postdose, 2 weeks after treatment initiation. Patients with plasma levels of rifampin lower than 8 mg/liter had a significantly lower median TDA (1.40 versus 1.68, P = 0.0013). TDA may be used to identify TB patients with suboptimal rifampin levels during TB treatment.
On the Design of Attitude Complementary Filters on $\text{SO}(3)$

This paper deals with the design, performance, and robustness analysis of nonlinear attitude complementary filters on <inline-formula><tex-math notation="LaTeX">$\text{SO}(3)$</tex-math></inline-formula>. We derive explicit time solutions of the attitude estimation error dynamics of the filters (in the disturbance-free case) and analyze their performance and robustness with respect to measurement disturbances. The stability and performance properties of the filters can be easily deduced from the obtained closed-form solutions. A new class of attitude complementary filters on <inline-formula><tex-math notation="LaTeX">$\text{SO}(3)$</tex-math></inline-formula> with state-dependent gains is proposed and shown to exhibit improved performance and robustness properties compared to the fixed-gain traditional complementary filter on <inline-formula><tex-math notation="LaTeX">$\text{SO}(3)$</tex-math></inline-formula>.
Genetic variation in foundation species governs the dynamics of trophic interactions

Abstract Various studies have demonstrated that the foundation species genetic diversity can have direct effects that extend beyond the individual or population level, affecting the dependent communities. Additionally, these effects may be indirectly extended to higher trophic levels throughout the entire community. Quercus castanea is an oak species with characteristics of foundation species beyond presenting a wide geographical distribution and being a dominant element of Mexican temperate forests. In this study, we analyzed the influence of population (He) and individual (HL) genetic diversity of Q. castanea on its canopy endophagous insect community and associated parasitoids. Specifically, we studied the composition, richness (S) and density of leaf-mining moths (Lepidoptera: Tischeridae, Citheraniidae), gall-forming wasps (Hymenoptera: Cynipidae), and canopy parasitoids of Q. castanea. We sampled 120 trees belonging to six populations (20/site) through the previously recognized gradient of genetic diversity. In total, 22 endophagous insect species belonging to three orders (Hymenoptera, Lepidoptera, and Diptera) and 20 parasitoid species belonging to 13 families were identified. In general, we observed that the individual genetic diversity of the host plant (HL) has a significant positive effect on the S and density of the canopy endophagous insect communities. In contrast, He has a significant negative effect on the S of endophagous insects. Additionally, indirect effects of HL were observed, affecting the S and density of parasitoid insects. Our results suggest that genetic variation in foundation species can be one of the most important factors governing the dynamics of tritrophic interactions that involve oaks, herbivores, and parasitoids.
Verb Biases Are Shaped Through Lifelong Learning

Verbs often participate in more than 1 syntactic structure, but individual verbs can be biased in terms of whether they are used more often with 1 structure or the other. For instance, in a sentence such as “Bop the bunny with the flower,” the phrase “with the flower” is more likely to indicate an instrument with which to “bop,” rather than which “bunny” to bop. Conversely, in a sentence such as “Choose the cow with the flower,” the phrase “with the flower” is more likely to indicate which “cow” to choose. An open question is where these biases come from and whether they continue to be shaped in adulthood in a way that has lasting consequences for real-time processing of language. In Experiment 1 we replicated previous findings that these language-wide biases guide online syntactic processing in a computer-based visual-world paradigm. In Experiment 2, we tested the malleability of these biases by exposing adults to initially unbiased verbs situated in unambiguous contexts that led to either instrument or modifier interpretations. During test, participants interpreted sentences containing either modifier- or instrument-trained verbs in ambiguous contexts. Eye-movement and action data show that participants’ considerations of the candidate interpretations of the ambiguous with-phrases were guided by the newly learned verb biases. These results suggest that co-occurrence information about specific verbs and syntactic structures embedded in language experiences plays a role in forming, and continuously shaping, the verb biases that constitute a part of the broader representation of the language.
The pigment composition of Phaeocystis antarctica (Haptophyceae) under various conditions of light, temperature, salinity, and iron

The pigment composition of Phaeocystis antarctica was monitored under various conditions of light, temperature, salinity, and iron. 19′‐Hexanoyloxyfucoxanthin (Hex‐fuco) always constituted the major light‐harvesting pigment, with remarkably stable ratios of Hex‐fuco‐to‐chl a under the various environmental conditions. Increased pigment‐to‐chl a ratios at low irradiance confirmed the light‐harvesting function of Fucoxanthin (Fuco), 19′‐Hexanoyloxy‐4‐ketofucoxanthin (Hex‐kfuco), 19′‐butanoyloxyfucoxanthin (But‐fuco), and chl c2 and c3. Increased pigment‐to‐chl a ratios at high irradiance, low iron concentrations, and to a lesser extent at high salinity confirmed the photoprotective function of diadinoxanthin, diatoxanthin, and ß,ß‐carotene. Pigment ratios were not always according to expectations. The consistent increase in But‐fuco/chl at high temperature, high salinity, and low iron suggests a role in photoprotection rather than in light harvesting. Low Hex‐kfuco/chl ratios at high salinity were consistent with a role as light harvester, but the high ratios at high temperature were not, leaving the function of Hex‐kfuco enigmatic. Dedicated experiments were performed to test whether or not the light‐harvesting pigment Fuco could be converted into its structural relative Hex‐fuco, and vice versa, in response to exposure to light shifts. Rapid conversions could not be confirmed, but long‐term conversions cannot be excluded. New pigment ratios are proposed for chemotaxonomic applications. The ratios will improve pigment‐based diagnosis of algal species in waters dominated by P. antarctica.
Expression and Function of the Protein Tyrosine Phosphatase Receptor J (PTPRJ) in Normal Mammary Epithelial Cells and Breast Tumors

The protein tyrosine phosphatase receptor J, PTPRJ, is a tumor suppressor gene that has been implicated in a range of cancers, including breast cancer, yet little is known about its role in normal breast physiology or in mammary gland tumorigenesis. In this paper we show that PTPRJ mRNA is expressed in normal breast tissue and reduced in corresponding tumors. Meta-analysis revealed that the gene encoding PTPRJ is frequently lost in breast tumors and that low expression of the transcript associated with poorer overall survival at 20 years. Immunohistochemistry of PTPRJ protein in normal human breast tissue revealed a distinctive apical localisation in the luminal cells of alveoli and ducts. Qualitative analysis of a cohort of invasive ductal carcinomas revealed retention of normal apical PTPRJ localization where tubule formation was maintained but that tumors mostly exhibited diffuse cytoplasmic staining, indicating that dysregulation of localisation associated with loss of tissue architecture in tumorigenesis. The murine ortholog, Ptprj, exhibited a similar localisation in normal mammary gland, and was differentially regulated throughout lactational development, and in an in vitro model of mammary epithelial differentiation. Furthermore, ectopic expression of human PTPRJ in HC11 murine mammary epithelial cells inhibited dome formation. These data indicate that PTPRJ may regulate differentiation of normal mammary epithelia and that dysregulation of protein localisation may be associated with tumorigenesis.
RETRACTED: A Common Discrete Resource for Visual Working Memory and Visual Search

The following article has been retracted by the Editor and publishers of Psychological Science: Anderson, D. E. , Vogel, E. K. , & Awh, E. (2013). A common discrete resource for visual working memory and visual search. Psychological Science, 24, 929–938. doi:10.1177/0956797612464380