Miracle-dz/UniFAR-FTUs huggingface dataset:
Hearing outcome of infants with congenital cytomegalovirus and hearing impairment

Background Congenital cytomegalovirus (cCMV) is the most common non-genetic cause of childhood sensorineural hearing loss. Antiviral treatment has been shown to prevent hearing deterioration in these infants. However, studies focused on infants with hearing impairment at birth and on the specific degree of impairment and further improvement or deterioration are lacking. Objective To investigate the relationship between hearing status at birth and any change in hearing status at the end of a prolonged follow-up period, after receiving 12 months of antiviral treatment in children born with hearing impairment due to congenital cCMV. Methods Clinical, laboratory, radiological and audiological data of all infants with cCMV infection followed in our centre between 2005 and 2013 were reviewed. Treatment with antiviral medication for hearing impairment found during the neonatal period was12 months of gan/valganciclovir. Hearing studies were performed only on infants who had been followed up for more than 1 year after treatment. Results Hearing impairment at birth was found in 54 (36.2%) of the 149 infants diagnosed with symptomatic cCMV, and found in 77 affected ears; unilateral in 31 (57.4%) and bilateral in 23 (42.6%). After 1 year of antiviral treatment and a long-term follow-up of the 77 affected ears at baseline, 50 (64.9%) had improved, 22 (28.6%) remained unchanged and 5 (6.5%) had deteriorated. Most improved ears (38/50=76%) returned to normal hearing. Improvement was most likely to occur in infants born with mild or moderate hearing loss and less in those with severe impairment. Conclusions We found that infants born with cCMV and hearing impairment, receiving 12 months of antiviral treatment, showed significant improvement in hearing status. The probability of hearing improvement seems inversely related to the severity of the impairment at birth.
A database of macromolecular motions.

We describe a database of macromolecular motions meant to be of general use to the structural community. The database, which is accessible on the World Wide Web with an entry point at http://bioinfo.mbb. yale.edu/MolMovDB , attempts to systematize all instances of protein and nucleic acid movement for which there is at least some structural information. At present it contains >120 motions, most of which are of proteins. Protein motions are further classified hierarchically into a limited number of categories, first on the basis of size (distinguishing between fragment, domain and subunit motions) and then on the basis of packing. Our packing classification divides motions into various categories (shear, hinge, other) depending on whether or not they involve sliding over a continuously maintained and tightly packed interface. In addition, the database provides some indication about the evidence behind each motion (i.e. the type of experimental information or whether the motion is inferred based on structural similarity) and attempts to describe many aspects of a motion in terms of a standardized nomenclature (e.g. the maximum rotation, the residue selection of a fixed core, etc.). Currently, we use a standard relational design to implement the database. However, the complexity and heterogeneity of the information kept in the database makes it an ideal application for an object-relational approach, and we are moving it in this direction. Specifically, in terms of storing complex information, the database contains plausible representations for motion pathways, derived from restrained 3D interpolation between known endpoint conformations. These pathways can be viewed in a variety of movie formats, and the database is associated with a server that can automatically generate these movies from submitted coordinates.
The Role of TGFβ Signaling in Squamous Cell Cancer: Lessons from Mouse Models

TGFβ1 is a member of a large growth factor family including activins/inhibins and bone morphogenic proteins (BMPs) that have a potent growth regulatory and immunomodulatory functions in normal skin homeostasis, regulation of epidermal stem cells, extracellular matrix production, angiogenesis, and inflammation. TGFβ signaling is tightly regulated in normal tissues and becomes deregulated during cancer development in cutaneous SCC and many other solid tumors. Because of these diverse biological processes regulated by TGFβ1, this cytokine and its signaling pathway appear to function at multiple points during carcinogenesis with distinct effects. The mouse skin carcinogenesis model has been a useful tool to dissect the function of this pathway in cancer pathogenesis, with transgenic and null mice as well as small molecule inhibitors to alter the function of the TGFβ1 pathway and assess the effects on cancer development. This paper will review data on changes in TGFβ1 signaling in human SCC primarily HNSCC and cutaneous SCC and different mouse models that have been generated to investigate the relevance of these changes to cancer. A better understanding of the mechanisms underlying the duality of TGFβ1 action in carcinogenesis will inform potential use of this signaling pathway for targeted therapies.
Comparison of Arboreal Beetle Catches in Wet and Dry Collection Cups with Lindgren Multiple Funnel Traps

Abstract We compared the effectiveness of a dry collection cup (with an insecticide killing strip) to a wet collection cup (containing antifreeze) for use with Lindgren multiple-funnel traps in catching several common species of bark and wood-boring beetles, and their associates in southern pine forests. All traps were baited with either the binary combination of ethanol and (−)-α-pinene or the quaternary combination of (±)-ipsenol, (±)-ipsdienol, ethanol, and (−)-α-pinene. We found that cup treatment had little, if any, effect on catches of Ips avulsus (Eichhoff) and I. grandicollis (Eichhoff) (Coleoptera: Scolytidae), Alaus myops (F.) (Elateridae), Chalcophora Solier species (Buprestidae), Temnochila virescens (F.) (Trogositidae), and Lasconotus Erichson species (Colydiidae). In contrast, catches of the following species were significantly less (by 40–97%) in traps with dry cups than in traps with wet cups: Hylobius pales Herbst and Pachylobius picivorus LeConte (Curculionidae); Buprestis lineata F. (Buprestidae); Acanthocinus obsoletus (Olivier), Arhopalus rusticus nubilus (LeConte), Monochamus titillator (F.) and Xylotrechus sagittatus sagittatus (Cerambycidae); Hylastes porculus Erichson and Xyleborinus saxeseni (Ratzeburg) (Scolytidae); and Thanasimus dubius (F.) (Cleridae). The same was true in at least one experiment for the following species: Dendroctonus terebrans (Olivier), Hylastes salebrosus Eichhoff, Hylastes tenuis Eichhoff, and Xylosandrus crassiusculus (Motschulsky) (Scolytidae). We conclude that cup treatment can have a significant impact on catches of some arboreal beetles in baited multiple-funnel traps. Anyone using multiple-funnel traps to capture arboreal beetles should evaluate the potential impacts arising from their choice of collection cup treatment to their trapping objectives and expectations. The issue of cup treatment may be particular important at low population levels when maximum trap efficiency is required such as in the detection of exotic insects at ports-of-entry and within quarantine and containment zones.
Rapid, reliable method for measuring serum lipase activity.

The method of Dirstine et al. [Clin. Chem. 14, 1097 (1968)] has been modified to increase sensitivity and decrease manipulations. The modifications permit a 10-min incubation, and a single analysis can be completed in 30 min, or five concomitant assays can be done in an hour. Stability of the substrate has been increased by increasing the emulsifier concentration. Recovery of the fatty acid products has been improved by adding electrolyte to the copper reagent and by using combined organic solvents. Pancreatin was added to human serum to provide samples with increased activities, with behavior identical to that of pathological sera with increased lipase activities. Normal values for 100 adults, 50 women and 50 men, ranged between 21 and 171 units, with a mean of 63 units. Within-day precision for 21 assays (mean activity, 641 units) was ±16 units (SD). Between-days precision for 36 assays was ±18 units (SD), with a mean of 636 units.
N-Pyrrylarylsulfones with High Therapeutic Potential

This review illustrates the various studies made to investigate the activity of N-pyrrylarylsulfone containing compounds as potential antiviral, anticancer and SNC drugs. A number of synthetic approaches to obtain tetracyclic, tricyclic and non-cyclic compounds, and their biological activity with regard to structure–activity relationships (SARs) have been reviewed. The literature reviewed here may provide useful information on the potential of N-pyrrylarylsulfone pharmacophore as well as suggest concepts for the design and synthesis of new N-pyrrylarylsulfone based agents.
Empathy and nonattachment independently predict peer nominations of prosocial behavior of adolescents

There is a plethora of research showing that empathy promotes prosocial behavior among young people. We examined a relatively new construct in the mindfulness literature, nonattachment, defined as a flexible way of relating to one's experiences without clinging to or suppressing them. We tested whether nonattachment could predict prosociality above and beyond empathy. Nonattachment implies high cognitive flexibility and sufficient mental resources to step out of excessive self-cherishing to be there for others in need. Multilevel Poisson models using a sample of 15-year olds (N = 1831) showed that empathy and nonattachment independently predicted prosocial behaviors of helpfulness and kindness, as judged by same-sex and opposite-sex peers, except for when boys nominated girls. The effects of nonattachment remained substantial in more conservative models including self-esteem and peer nominations of liking.
A Comparison of the Long-Term Morbidity following Deep Circumflex Iliac and Fibula Free Flaps for Reconstruction following Head and Neck Cancer

Composite free tissue transfer has an established role in head and neck oncology for the reconstruction of the bony defect following tumor ablation, and while donor-site morbidity is variably reported, there is little consensus on the most favorable donor site. The fibula and deep circumflex iliac artery have distinct advantages in terms of the volume and length of bone in mandibular reconstruction. Few studies have compared their donor-site morbidity. The aim of this study was to compare the fibula and deep circumflex iliac artery flaps using a review of the case notes and cross-sectional review of patients attending a research clinic for validated orthopedic examination and completion of health-related quality-of-life questionnaires. Between February of 1993 and May of 2001, 44 fibula free flaps and 73 deep circumflex iliac artery free flaps were performed. Ninety-nine case notes and 36 patients were available for review of donor-site morbidity. Sixteen patients with fibula flaps and 20 patients with deep circumflex iliac artery flaps took part in the clinical examination component of the study, which was composed of a clinical examination by an orthopedic surgeon using the American Orthopedic Foot and Ankle Society ankle scoring system and the Harris hip scoring system, and two patient-completed questionnaires, the University of Washington Questionnaire and the Hospital Anxiety and Depression Scale. Subjective and objective markers of morbidity related to both flaps were similar in most parameters. However, fibula flaps were associated with more problems with donor-site healing, reduced power, and sensation. Poor orthopedic scores for both flaps were associated with notably poor scores on the University of Washington Questionnaire and the Hospital Anxiety and Depression Scale. The study would suggest that both deep circumflex iliac artery and fibula donor sites result in an acceptable and comparable morbidity for most patients, but in cases in which significant donor-site morbidity is encountered, health-related quality of life is significantly compromised.
Stoichiometric Characteristics of Carbon, Nitrogen, and Phosphorus in Leaves of Differently Aged Lucerne (Medicago sativa) Stands

Element concentration within a plant which is vital to function maintenance and adaptation to environment, may change with plant growth. However, how carbon (C), nitrogen (N), and phosphorus (P) vary stoichiometrically with stand growth, i.e., ages or cuts, was still untouched in perennial species. This study tested the hypothesis that lucerne (Medicago sativa) C:N, C:P, and N:P should change with stand age and cut. Leaf C:N, C:P, and N:P changed with stand age, showing various trends in different cuts of lucerne. Generally the greatest stoichiometric ratios were measured in 8 year stand and in the second cut. They were affected significantly and negatively by total N and P concentrations of leaf, but not by organic C concentration. There were significantly positive correlations among leaf C:N, C:P, and N:P. However, leaf C:N, C:P, and N:P were hardly affected by soil features. Conclusively, lucerne C, N, and P stoichiometry are age- and cut-specific, and regulated mainly by leaf N, P concentrations and stoichiometry. There are few correlations with soil fertility. To our knowledge, it is the first try to elucidate the stoichiometry in the viewpoint of age and cut with a perennial herbaceous legume.
Atherosclerotic Plaque Vulnerability as an Explanation for the Increased Risk of Stroke in Elderly Undergoing Carotid Artery Stenting

Background and Purpose— Recent randomized trials showed an increased periprocedural risk for stroke with increasing age in patients undergoing carotid artery stenting. Manipulation of atherosclerotic plaques during carotid artery stenting can result in plaque rupture with subsequent superimposed thrombus formation, embolization, and cerebrovascular events. We hypothesized that atherosclerotic plaques become more unstable with increasing age and thereby might provide insight into the age-related increased risk of cerebrovascular events during carotid artery stenting. Methods— Carotid atherosclerotic plaques were harvested from 1385 consecutive patients undergoing carotid endarterectomy between 2002 and 2010. Carotid plaques were quantitatively analyzed for macrophages, smooth muscle cells, and microvessels; and semiquantitatively analyzed for collagen, calcifications lipid cores, and intraplaque hemorrhages. Patients were divided in 4 groups by age: <60, 60 to 69, 70 to 79, and ≥80 years. Measures of association between age as a continuous variable and histological characteristics were also calculated. Results— Increasing age was associated with a decrease in the amount of smooth muscle cells in the carotid plaque. More plaques with large atheroma and heavy plaque calcifications were observed among elderly patients. After correction for baseline differences, risk factors, and medication use, age was independently associated with a more vulnerable carotid plaque composition. Conclusion— Plaque stability decreases gradually with age. Older patients with carotid stenosis have relatively unstable plaques with low smooth muscle cell content, a high amount of large lipid cores, and more calcified plaques as compared with younger patients. The underlying vulnerable plaque composition in the elderly might be an important contributing factor to the increased risk of stroke for older patients undergoing carotid artery stenting.
Towards cooperative guidance and control of highly automated vehicles: H-Mode and Conduct-by-Wire

This article provides a general ergonomic framework of cooperative guidance and control for vehicles with an emphasis on the cooperation between a human and a highly automated vehicle. In the twenty-first century, mobility and automation technologies are increasingly fused. In the sky, highly automated aircraft are flying with a high safety record. On the ground, a variety of driver assistance systems are being developed, and highly automated vehicles with increasingly autonomous capabilities are becoming possible. Human-centred automation has paved the way for a better cooperation between automation and humans. How can these highly automated systems be structured so that they can be easily understood, how will they cooperate with the human? The presented research was conducted using the methods of iterative build-up and refinement of framework by triangulation, i.e. by instantiating and testing the framework with at least two derived concepts and prototypes. This article sketches a general, conceptual ergonomic framework of cooperative guidance and control of highly automated vehicles, two concepts derived from the framework, prototypes and pilot data. Cooperation is exemplified in a list of aspects and related to levels of the driving task. With the concept ‘Conduct-by-Wire', cooperation happens mainly on the guidance level, where the driver can delegate manoeuvres to the automation with a specialised manoeuvre interface. With H-Mode, a haptic-multimodal interaction with highly automated vehicles based on the H(orse)-Metaphor, cooperation is mainly done on guidance and control with a haptically active interface. Cooperativeness should be a key aspect for future human–automation systems. Especially for highly automated vehicles, cooperative guidance and control is a research direction with already promising concepts and prototypes that should be further explored. The application of the presented approach is every human–machine system that moves and includes high levels of assistance/automation. Practitioner Summary: The aim of this article is to sketch a general ergonomic framework of cooperative guidance and control. After a general description, the framework is illustrated through descriptions of two examples for which prototype embodiments have been developed and preliminary evaluations conducted. Major findings of pilot studies show good system performance and acceptance.
Videofluoroscopic studies of swallowing dysfunction and the relative risk of pneumonia.

OBJECTIVE The purpose of our investigation was to determine the relationship between the degree of swallowing dysfunction observed on barium studies and the likelihood of developing pneumonia in a large series of patients. MATERIALS AND METHODS The findings on videofluoroscopic swallowing studies in 381 patients were used to classify these patients into one of five groups: those with normal swallowing; those with abnormal swallowing but no laryngeal penetration or tracheobronchial aspiration; those with laryngeal penetration; those with tracheobronchial aspiration; and those with silent tracheobronchial aspiration. Clinical data were also reviewed to determine how many patients had developed pneumonia during the 6 months before or after the barium studies. The data were then analyzed to determine whether the risk of developing pneumonia increased significantly with each level of swallowing dysfunction seen on barium studies. RESULTS No significant difference was found in the frequency of pneumonia in patients with abnormal swallowing but no laryngeal penetration or tracheobronchial aspiration compared with patients with normal swallowing on barium studies (p = 0.85). In contrast, patients with laryngeal penetration, tracheobronchial aspiration, or silent tracheobronchial aspiration were approximately four times (p = 0.008), 10 times (p < 0.0001), and 13 times (p < 0.0001), respectively, more likely to develop pneumonia than those with normal swallowing. CONCLUSION Our findings indicate that the likelihood of developing pneumonia is directly related to the degree of swallowing dysfunction seen on videofluoroscopic studies. Patients with no laryngeal penetration-regardless of whether they had normal or abnormal swallowing-have the lowest risk of developing pneumonia. Patients with laryngeal penetration, tracheobronchial aspiration, or silent tracheobronchial aspiration are, in increasing order of magnitude, significantly more likely to develop pneumonia than patients with normal swallowing.
Turbo equalization - Signal Processing Magazine, IEEE

apitalizing on the tremendous per formance gains of turbo codes and the turbo decoding algorithm, turbo equalization is an iterative equalization and decoding technique that can achieve equally impressive performance gains for communication systems that send digital data over channels that require equalization, i.e., those that suffer from intersymbol interference (ISI). In this article, we discuss the turbo equalization approach to coded data transmission over ISI channels, with an emphasis on the basic ideas and some of the practical details. The original system introduced by Douillard et al. can be viewed as an extension of the turbo decoding algorithm by considering the effect of the ISI channel as another form of error protection, i.e., as a rate-1 convolutional code.
The recordability of two sonomotor responses in young normal subjects.

BACKGROUND It has been reported that up to 40% of patients over age 60 fail to generate a vestibular evoked myogenic potential (VEMP; Su et al, 2004). When this occurs it is difficult to determine whether the absent VEMP represents evidence of bilateral impairment of the vestibulocollic reflex pathway or a normal age-related variant (i.e., idiopathic absence). PURPOSE The purpose of the present investigation was to determine whether both VEMPs and PAMs could be recorded reliably in a sample of neurologically and otologically intact young adults. If both could be obtained with high reliability in normal subjects, then the bilateral presence of PAM in the bilateral absence of VEMP, at least in younger patients, could be used to support the contention that the absent VEMP represented evidence of bilateral impairment. RESEARCH DESIGN A descriptive study. STUDY SAMPLE Attempts were made to record both the VEMP and a second sonomotor response, the postauricular muscle potential (PAM) from 20 young adults. RESULTS Results showed both the VEMP and the PAM were present in 90% of the ears. Both the VEMP and PAM responses were bilaterally absent for one subject. Also, the VEMP and PAM were unilaterally absent for two subjects. Subjects who generated VEMPs also generated a PAM in at least one ear. CONCLUSIONS The present investigation represents an initial step in the determination of whether the presence of PAMs in the absence of VEMPs can be used as a method of validating the presence of an impairment affecting the vestibulocollic reflex pathway.