Miracle-dz/UniFAR-FTUs huggingface dataset:
An Engineered N-Cadherin Substrate for Differentiation, Survival, and Selection of Pluripotent Stem Cell-Derived Neural Progenitors

For stem cell-based treatment of neurodegenerative diseases a better understanding of key developmental signaling pathways and robust techniques for producing neurons with highest homogeneity are required. In this study, we demonstrate a method using N-cadherin-based biomimetic substrate to promote the differentiation of mouse embryonic stem cell (ESC)- and induced pluripotent stem cell (iPSC)-derived neural progenitor cells (NPCs) without exogenous neuro-inductive signals. We showed that substrate-dependent activation of N-cadherin reduces Rho/ROCK activation and β-catenin expression, leading to the stimulation of neurite outgrowth and conversion into cells expressing neural/glial markers. Besides, plating dissociated cells on N-cadherin substrate can significantly increase the differentiation yield via suppression of dissociation-induced Rho/ROCK-mediated apoptosis. Because undifferentiated ESCs and iPSCs have low affinity to N-cadherin, plating dissociated cells on N-cadherin-coated substrate increase the homogeneity of differentiation by purging ESCs and iPSCs (~30%) from a mixture of undifferentiated cells with NPCs. Using this label-free cell selection approach we enriched differentiated NPCs plated as monolayer without ROCK inhibitor. Therefore, N-cadherin biomimetic substrate provide a powerful tool for basic study of cell—material interaction in a spatially defined and substrate-dependent manner. Collectively, our approach is efficient, robust and cost effective to produce large quantities of differentiated cells with highest homogeneity and applicable to use with other types of cells.
Motor and Linguistic Linking of Space and Time in the Cerebellum

Background Recent literature documented the presence of spatial-temporal interactions in the human brain. The aim of the present study was to verify whether representation of past and future is also mapped onto spatial representations and whether the cerebellum may be a neural substrate for linking space and time in the linguistic domain. We asked whether processing of the tense of a verb is influenced by the space where response takes place and by the semantics of the verb. Principal Findings Responses to past tense were facilitated in the left space while responses to future tense were facilitated in the right space. Repetitive transcranial magnetic stimulation (rTMS) of the right cerebellum selectively slowed down responses to future tense of action verbs; rTMS of both cerebellar hemispheres decreased accuracy of responses to past tense in the left space and to future tense in the right space for non-verbs, and to future tense in the right space for state verbs. Conclusions The results suggest that representation of past and future is mapped onto spatial formats and that motor action could represent the link between spatial and temporal dimensions. Right cerebellar, left motor brain networks could be part of the prospective brain, whose primary function is to use past experiences to anticipate future events. Both cerebellar hemispheres could play a role in establishing the grammatical rules for verb conjugation.
Introducing the "TCDD-inducible AhR-Nrf2 gene battery".

2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) induces genes via the transcription factor aryl hydrocarbon receptor (AhR), including Cyp1a1, NAD(P)H:quinone oxidoreductase 1 (Nqo1), UDP-glucuronosyltransferase 1a6 (Ugt1a6), and glutathione S-transferase a1 (Gsta1). These genes are referred to as the "AhR gene battery. " However, Nqo1 is also considered a prototypical target gene of the transcription factor nuclear factor erythroid 2-related factor 2 (Nrf2). In mice, TCDD induction of Nrf2 and Nrf2 target, Nqo1, is dependent on AhR, and thus TCDD induction of drug-processing genes may be routed through an AhR-Nrf2 sequence. There has been speculation that Nrf2 may be involved in the TCDD induction of drug-processing genes; however, the data are not definitive. Therefore, to address whether TCDD induction of Nqo1, Ugts, and Gsts is dependent on Nrf2, we conducted the definitive experiment by administering TCDD (50 mug/kg, ip) to Nrf2-null and wild-type (WT) mice and collecting livers 24 h later to quantify the mRNA of drug-processing genes. TCDD induction of Cyp1a1 and Ugt1a1 was similar in WT and Nrf2-null mice, whereas TCDD induction of Ugt1a5 and 1a9 was blunted in Nrf2-null mice. TCDD induced Nqo1, Ugt1a6, 2b34, 2b35, 2b36, UDP-glucuronic acid-synthesizing gene UDP-glucose dehydrogenase, and Gsta1, m1, m2, m3, m6, p2, t2, and microsomal Gst1 in WT mice but not in Nrf2-null mice. Therefore, the present study demonstrates the novel finding that Nrf2 is required for TCDD induction of classical AhR battery genes Nqo1, Ugt1a6, and Gsta1, as well as most Ugt and Gst isoforms in livers of mice.
Structure of Gαq-p63RhoGEF-RhoA Complex Reveals a Pathway for the Activation of RhoA by GPCRs

The guanine nucleotide exchange factor p63RhoGEF is an effector of the heterotrimeric guanine nucleotide–binding protein (G protein) Gαq and thereby links Gαq-coupled receptors (GPCRs) to the activation of the small-molecular-weight G protein RhoA. We determined the crystal structure of the Gαq-p63RhoGEF-RhoA complex, detailing the interactions of Gαq with the Dbl and pleckstrin homology (DH and PH) domains of p63RhoGEF. These interactions involve the effector-binding site and the C-terminal region of Gαq and appear to relieve autoinhibition of the catalytic DH domain by the PH domain. Trio, Duet, and p63RhoGEF are shown to constitute a family of Gαq effectors that appear to activate RhoA both in vitro and in intact cells. We propose that this structure represents the crux of an ancient signal transduction pathway that is expected to be important in an array of physiological processes.
Work technique and its consequences for musculoskeletal disorders.

Work in the manufacturing industry is associated with a high prevalence of cervicobrachial disorders. The outcome in individual cases varies; some go without symptoms for many years, others have to be relocated because of serious disorders after only a few years. Since the gross characteristics of the work tasks do not show a large variation, powerful individual factors must exert their influence, either protecting the individual or increasing vulnerability. A prospective study was conducted to identify such factors. The aim was to relate the outcome in terms of disorders in the neck-shoulder-arm region to such factors as individual variations in working technique, physical capacity, and medical and work history. In order to investigate individual differences in working technique two subgroups of women were studied. The results show that the number of changes in posture, as well as the percentage of work cycle time spent with the upper arm in different angular sectors, varied to a large extent among worke.
Restricted strong convexity and weighted matrix completion: Optimal bounds with noise

We consider the matrix completion problem under a form of row/column weighted entrywise sampling, including the case of uniformentrywise sampling as a special case. We analyze the associated random observation operator, and prove that with high probability, it satisfies a form of restricted strong convexity with respect to weighted Frobenius norm. Using this property, we obtain as corollaries a number of error bounds on matrix completion in the weighted Frobenius norm under noisy sampling and for both exact and near low-rank matrices. Our results are based on measures of the 'spikiness' and 'low-rankness' of matrices that are less restrictive than the incoherence conditions imposed in previous work. Our technique involves an M-estimator that includes controls on both the rank and spikiness of the solution, and we establish non-asymptotic error bounds in weighted Frobenius norm for recovering matrices lying with lq-"balls" of bounded spikiness. Using information-theoretic methods, we show that no algorithm can achieve better estimates (up to a logarithmic factor) over these same sets, showing that our conditions on matrices and associated rates are essentially optimal.
Idler-efficiency-enhanced long-wave infrared beam generation using aperiodic orientation-patterned GaAs gratings.

In this paper, we design aperiodic gratings based on orientation-patterned gallium arsenide (OP-GaAs) for converting 2.1 μm pump laser radiation into long-wave infrared (8-12 μm) in an idler-efficiency-enhanced scheme. These single OP-GaAs gratings placed in an optical parametric oscillator (OPO) or an optical parametric generator (OPG) can simultaneously phase match two optical parametric amplification (OPA) processes, OPA 1 and OPA 2. We use two design methods that allow simultaneous phase matching of two arbitrary χ(2) processes and also free adjustment of their relative strength. The first aperiodic grating design method (Method 1) relies on generating a grating structure that has domain walls located at the zeros of the summation of two cosine functions, each of which has a spatial frequency that equals one of the phase-mismatch terms of the two processes. Some of the domain walls are discarded considering the minimum domain length that is achievable in the production process. In this paper, we propose a second design method (Method 2) that relies on discretizing the crystal length with sample lengths that are much smaller than the minimum domain length and testing each sample's contribution in such a way that the sign of the nonlinearity maximizes the magnitude sum of the real and imaginary parts of the Fourier transform of the grating function at the relevant phase mismatches. Method 2 produces a similar performance as Method 1 in terms of the maximization of the height of either Fourier peak located at the relevant phase mismatch while allowing an adjustable relative height for the two peaks. To our knowledge, this is the first time that aperiodic OP-GaAs gratings have been proposed for efficient long-wave infrared beam generation based on simultaneous phase matching.
An investigation of herpes simplex virus promoter activity compatible with latency establishment reveals VP16-independent activation of immediate-early promoters in sensory neurones

Herpes simplex virus (HSV) type-1 establishes lifelong latency in sensory neurones and it is widely assumed that latency is the consequence of a failure to initiate virus immediate-early (IE) gene expression. However, using a Cre reporter mouse system in conjunction with Cre-expressing HSV-1 recombinants we have previously shown that activation of the IE ICP0 promoter can precede latency establishment in at least 30 % of latently infected cells. During productive infection of non-neuronal cells, IE promoter activation is largely dependent on the transactivator VP16 a late structural component of the virion. Of significance, VP16 has recently been shown to exhibit altered regulation in neurones; where its de novo synthesis is necessary for IE gene expression during both lytic infection and reactivation from latency. In the current study, we utilized the Cre reporter mouse model system to characterize the full extent of viral promoter activity compatible with cell survival and latency establishment. In contrast to the high frequency activation of representative IE promoters prior to latency establishment, cell marking using a virus recombinant expressing Cre under VP16 promoter control was very inefficient. Furthermore, infection of neuronal cultures with VP16 mutants reveals a strong VP16 requirement for IE promoter activity in non-neuronal cells, but not sensory neurones. We conclude that only IE promoter activation can efficiently precede latency establishment and that this activation is likely to occur through a VP16-independent mechanism.
Reproducibility analysis on shear wave elastography (SWE)-based quantitative assessment for skin elasticity

Abstract Shear Wave Elastography (SWE) is an objective and non-invasive method widely used to quantify the tissue solidity. However, there are concerns about the accuracy of the skin SWE results due to the low signal-to-noise ratio (SNR) caused by subcutaneous fat, muscle and bone. This article analyzed the reproducibility of the result for skin SWE and therefore evaluated the availability of SME for skin elasticity involved diseases. Thirty volunteers (mean age: 37 ± 12 years) were selected. SWE were taken on the skin of abdomen and the middle tibia in order to assess the impact of fat, muscle and bone on SWE results. Skin in the area of anterior and lateral tibia marked with seven parallel lines, and each line indicated an identical thickness of the subcutaneous fat from 1–7 mm. Intra-class correlation coefficients (ICC) were used to evaluate the intra-observer and inter-observer reproducibility. The solidity of abdominal skin showed soft and small individual differences (12.4 ± 2.7 kPa), whereas high shear moduli (25–48 kPa) were observed in the skin above tibia and tibialis anterior muscle. When the subcutaneous fat was thicker than 3 mm (≥3), we obtained excellent intra-observer reproducibility (ICC range 0.78–0.98) and inter-observer reproducibility (ICC range 0.75–0.98). The thickness of subcutaneous fat could affect the reproducibility of skin SWE. The further study on skin SWE standardization should be taken.
Adaptive PID control based on RBF neural network identification

Radial basis function (RBF) neural network (NN) is powerful computational tools that have been used extensively in the areas of pattern recognition, systems modeling and identification. This paper proposes an adaptive PID control method based on RBF neural network identification. This approach can on-line identify the controlled plant with the RBF neural network identifier and the weights of the adaptive PID controller are adjusted timely based-on the identification of the plant and self-learning capability of RBFNN. Simulation result shows that the proposed controller has the adaptability, strong robustness and satisfactory control performance in the nonlinear and time varying system
Laser-Induced Periodic Surface Structures— A Scientific Evergreen

Laser-induced periodic surface structures (LIPSS, ripples) are a universal phenomenon and can be generated on almost any material upon irradiation with linearly polarized radiation. With the availability of ultrashort laser pulses, LIPSS have gained an increasing attraction during the past decade, since these structures can be generated in a simple single-step process, which allows a surface nanostructuring for tailoring optical, mechanical, and chemical surface properties. In this study, the current state in the field of LIPSS is reviewed. Their formation mechanisms are analyzed in ultrafast time-resolved scattering, diffraction, and polarization constrained double-pulse experiments. These experiments allow us to address the question whether the LIPSS are seeded via ultrafast energy deposition mechanisms acting during the absorption of optical radiation or via self-organization after the irradiation process. Relevant control parameters of LIPSS are identified, and technological applications featuring surface functionalization in the fields of optics, fluidics, medicine, and tribology are discussed.
A Behavioral Assessment of Hippocampal Function Based on a Subregional Analysis

The purpose of this review is to determine whether specific subregions (dentate gyrus [DG], CA3, and CA1) of the hippocampus provide unique contributions to specific processes associated with intrinsic information processing exemplified by novelty detection, encoding, pattern separation, pattern association, pattern completion, retrieval, short-term memory and intermediate-term memory. Based on anatomical neural network organization, electrophysiology of cellular activity, lesions, early gene activation, and computational modeling, it can be shown that there exists extensive cooperation among the three subregions of the hippocampus, but there also exists reliable specificity of function for each of the subregions of the hippocampus. The primary process supported by the DG subregion of the hippocampus can be characterized by orthogonalization of sensory inputs to create a metric spatial representation. Furthermore the DG participates in conjunction with CA3 in supporting spatial pattern separation. The CA3 subregion of the hippocampus supports processes associated with spatial pattern association, spatial pattern completion, novelty detection, and short-term memory. The CA1 subregion of the hippocampus supports processes associated with temporal pattern association, temporal pattern completion, and intermediate-term memory. Furthermore, the CA3 in conjunction with CA1 supports temporal pattern separation. All the above-mentioned processes are assumed to reflect intrinsic processing of information within the hippocampus. The diversity of functions associated with the different subregions of the hippocampus suggests that one should not treat the hippocampus as a single entity, but rather that one should concentrate on elucidating further the functions of both dorsal and ventral subregions of the hippocampus and pathways that directly connect each of the subregions as well as their connections with the entorhinal cortex.
Rhythmic Characteristics of Parkinsonian Speech: A Study on Mandarin and Polish

Previous studies on Italian speech showed that the percentage of vocalic portion in the utterance (%V) and the duration of the interval between two consecutive vowel onset points (VtoV) were larger for parkinsonian (PD) than for healthy controls (HC). Especially, the values of %V were distinctly separated between PD and HC. The present study aimed to further test the finding on Mandarin and Polish. Twenty-five Mandarin speakers (13 PD and 12 HC matched on age) and thirty-one Polish speakers (18 PD and 13 HC matched on age) read aloud a passage of story. The recorded speeches were segmented into vocalic and consonantal intervals, and then %V and VtoV were calculated. For both languages, VtoV overlapped between HC and PD. For Polish, %V was distinctly higher in PD than in HC, while for Mandarin there was no significant difference. It suggests that %V could be used for automatic diagnosis of PD for Italian and Polish, but not for Mandarin. The effectiveness of the rhythmic metric appears to be language-dependent, varying with the rhythmic typology of the language.
Hot flashes and related outcomes in breast cancer survivors and matched comparison women.

PURPOSE/OBJECTIVES To compare the hot flash symptom experience and related outcomes between breast cancer survivors and healthy women. DESIGN Descriptive, cross-sectional, comparative study. SETTING Southeastern university medical center. SAMPLE 69 of 207 breast cancer survivors contacted via a tumor registry and 63 age-matched healthy female volunteers. Survivors were a mean of 57 years and a mean of 39 months postdiagnosis. METHODS Mailed survey included a demographic, disease, and treatment information form; a gynecologic history form; a two-day, prospective, hot flash diary; a detailed hot flash questionnaire; mood and affect scales; and the Hot Flash-Related Daily Interference Scale. MAIN RESEARCH VARIABLES Hot flashes, mood, affect, interference with daily activities, and overall quality of life. FINDINGS Breast cancer survivors had hot flashes that were significantly more frequent, severe, distressing, and of greater duration. Breast cancer survivors were less likely to be using hormone replacement and more likely to have tried nonhormonal prescription interventions in the past, but reported significantly less effectiveness from hot flash treatments. Breast cancer survivors with severe hot flashes reported significantly greater mood disturbance; higher negative affect; more interference with daily activities, including sleep, concentration, and sexuality; and poorer overall quality of life in comparison to breast cancer survivors with no hot flashes to mild hot flashes. Hot flash quality and triggers were not significantly different between groups. No clear temporal pattern of hot flashes emerged. CONCLUSIONS Hot flashes are a significant problem for breast cancer survivors, even for those who are naturally postmenopausal (i.e., did not undergo menopause as a result of surgery or the effects of chemotherapy). Hot flashes remained fairly stable over time and did not diminish in frequency, severity, or associated distress. IMPLICATIONS FOR NURSING The findings guide the assessment of the uniqueness of the problem of hot flashes experienced by breast cancer survivors and help define outcomes to address in clinical practice or include in future hot flash intervention research.
Minimum pearson distance detection in the presence of unknown slowly varying offset

Minimum Pearson Distance (MPD) detection offers resilience against unknown channel gain and varying offset. MPD detection is used in conjunction with a set, S, of 2-ary codewords having specific properties. In this work, we study the properties of the codewords of S, compute the size of S, and derive its redundancy for asymptotically large values of the codeword length n. The redundancy of S is approximately 3/2 log<sub>2</sub> n + α; where α = log<sub>2</sub>√π/24 = -1.467. for n odd and α = -0.467. for n even.
On the Search Properties of Different Crossover Operators in Genetic Programming

In this paper we study and compare the search properties of different crossover operators in genetic programming (GP) using probabilistic models and experiments to assess the amount of genetic material exchanged between the parents to generate the offspring. These operators are: standard crossover, onepoint crossover and a new operator, uniform crossover. Our analysis suggests that standard crossover is a local and biased search operator not ideal to explore the search space of programs effectively. One-point crossover is better in some cases as it is able to perform a global search at the beginning of a run, but it suffers from the same problems as standard crossover later on. Uniform crossover largely overcomes these limitations as it is global and less biased.
Direct simulation of non-premixed flame extinction in a methane–air jet with reduced chemistry

A three-dimensional direct numerical simulation (DNS) study of a spatially evolving planar turbulent reacting jet is reported. Combustion of methane with air is modelled using a four-step reduced mechanism in the non-premixed regime. A total of eight chemical species are integrated in time along with the fluid mechanical fields. The solution of the compressible Navier–Stokes equations is obtained numerically for moderately low Mach number. A large computational grid, with 100 million grid points, is required in order to resolve the flame. The cold flow Reynolds number is 3000. The focus of the study is to investigate the dynamics of extinction fronts in three-dimensional turbulent flows. A novel data reduction and identification algorithm was developed to postprocess the large DNS database and extract the shape of the evolving flame surface including its edges and their propagation velocity. The joint probability density function (p.d.f.) of edge velocity and scalar dissipation was obtained and the results indicate that the three-dimensional flame edges propagate with a velocity that is largely controlled by the local rate of scalar dissipation, or equivalently in terms of the local Damköhler number at the flame edge, as predicted by theory. Naturally, the effects of unsteadiness in this flow produce a broad joint p.d. f. The statistics collected also suggest that the mean value of the hydrogen radical reaction rate are very small in the turbulent regions of the flow owing to the functional form of the hydrogen radical reaction rate itself. The consequence of these results in the context of turbulent combustion modelling is discussed. Additional statistical and morphological information of the flame is provided.