Miracle-dz/UniFAR-FTUs huggingface dataset:
Effect of ethanolic extract of Bougainvillea spectabilis leaves on haematological and serum lipid variables in rats

The effect of ethanolic extract of Bougainvillea spectabilis leaves on some haematological and serum lipid parameters in rats during a seven day administration of the doses of 50,100 and 200mg/kg body weight orally was investigated. The parameters evaluated include serum lipids, red and white blood cell indices. The results show that the extract administered significantly reduced (P 0.05) on MCH, MCHC, MCV and platelet count when compared with controls. Moreover, the extract significantly reduced (P 0.05) on serum HDL-cholesterol concentration at all doses administered when compared with controls. However, the extract significantly increased (P 0.05) on serum triacylglycerol concentration. The results of this study suggest that the extract may have beneficial effect on serum cholesterol concentration reduction, although it possibly possesses the potential of adversely affecting haematological indices.
Improved detection of diffuse large B‐cell lymphoma by flow cytometric immunophenotyping—Effect of tissue disaggregation method

Flow cytometric immunophenotyping (FCI) is recognized as a rapid, sensitive, and accurate method for diagnosis of B‐cell lymphomas. We observed that FCI failed to identify the clonal B‐cell population in several cases of large B‐cell lymphoma (DLBCL) when tissue samples were prepared by a commercially available mechanical tissue disaggregation method. We tested a manual tissue disaggregation method and compared it with the mechanical method.
A survey of vaccine history in German cats and owners’ attitudes to vaccination

Objectives Vaccination is the most important measure for prevention of feline infectious diseases. Cat owner compliance with vaccination recommendations has been investigated in the UK but not in other European countries. The aim of the present study was to determine cat owners’ attitudes towards vaccination in cats in Germany, to identify factors that are associated with the vaccination status of their cats and to compare the results with those of the UK survey. Methods The survey was conducted using an online questionnaire and was aimed at respondents throughout Germany. Respondents under 16 years of age, cats that were less than 9 weeks old and veterinarians were excluded. A total of 920 questionnaires were evaluated, and information about cats and respondents was assessed with respect to the current vaccination status of the cats using a linear logistic regression model. Results The majority of cats (77.9%; n = 717) were vaccinated according to current guidelines; only 5.4% (n = 50; 95% confidence interval [CI] 5.00–9.00) of cats had never received a vaccine. Having visited a cattery, a cat show or travelled abroad in the past 12 months (n = 96/773; odds ratio [OR] 6.95; 95% CI 1.65–52.19) had the highest positive impact on the vaccination status of cats. In addition, detailed veterinary advice about vaccination had a positive impact (n = 275/773; OR 2.09; 95% CI 0.67–6.25) on the attitude of owners towards vaccinating their cats. Conclusions and relevance A history of travelling abroad or visiting cat shows or a cattery, and thus regulatory requirements, had the greatest positive impact on the current vaccination status of the cats. Veterinary consultation on preventive measures, including vaccination, is crucial for protecting the cat population against infectious diseases.
Respiratory and Immune Response to Maximal Physical Exertion following Exposure to Secondhand Smoke in Healthy Adults

We assessed the cardiorespiratory and immune response to physical exertion following secondhand smoke (SHS) exposure through a randomized crossover experiment. Data were obtained from 16 (8 women) non-smoking adults during and following a maximal oxygen uptake cycling protocol administered at baseline and at 0-, 1-, and 3- hours following 1-hour of SHS set at bar/restaurant carbon monoxide levels. We found that SHS was associated with a 12% decrease in maximum power output, an 8.2% reduction in maximal oxygen consumption, a 6% increase in perceived exertion, and a 6.7% decrease in time to exhaustion (P<0.05). Moreover, at 0-hours almost all respiratory and immune variables measured were adversely affected (P<0.05). For instance, FEV1 values at 0-hours dropped by 17.4%, while TNF-α increased by 90.1% (P<0.05). At 3-hours mean values of cotinine, perceived exertion and recovery systolic blood pressure in both sexes, IL4, TNF-α and IFN-γ in men, as well as FEV1/FVC, percent predicted FEV1, respiratory rate, and tidal volume in women remained different compared to baseline (P<0.05). It is concluded that a 1-hour of SHS at bar/restaurant levels adversely affects the cardiorespiratory and immune response to maximal physical exertion in healthy nonsmokers for at least three hours following SHS.
Transcriptional Profiling of Formalin Fixed Paraffin Embedded Tissue: Pitfalls and Recommendations for Identifying Biologically Relevant Changes

Expression profiling techniques have been used to study the biology of many types of cancer but have been limited to some extent by the requirement for collection of fresh tissue. In contrast, formalin fixed paraffin embedded (FFPE) samples are widely available and represent a vast resource of potential material. The techniques used to handle the degraded and modified RNA from these samples are relatively new and all the pitfalls and limitations of this material for whole genome expression profiling are not yet clarified. Here, we analyzed 70 FFPE tongue carcinoma samples and 17 controls using the whole genome DASL array covering nearly 21000 genes. We identified that sample age is related to quality of extracted RNA and that sample quality influences apparent expression levels in a non-random manner related to gene probe sequence, leading to spurious results. However, by removing sub-standard samples and analysing only those 28 cancers and 15 controls that had similar quality we were able to generate a list of 934 genes significantly altered in tongue cancer compared to control samples of tongue. This list contained previously identified changes and was enriched for genes involved in many cancer-related processes such as tissue remodelling, inflammation, differentiation and apoptosis. Four novel genes of potential importance in tongue cancer development and maintenance, SH3BGL2, SLC2A6, SLC16A3 and CXCL10, were independently confirmed, validating our data. Hence, gene expression profiling can be performed usefully on archival material if appropriate quality assurance steps are taken to ensure sample consistency and we present some recommendations for the use of FFPE material based on our findings.
The effect of bone loss on rod-like and plate-like trabeculae in the cancellous bone of the mandibular condyle

Bone loss may affect the structure of cancellous bone. But its effect on trabeculae with different characteristics, like rods and plates, is not accurately known. This study analyzes the effect of bone loss on individual rod-like and plate-like trabeculae. 94 specimens were obtained from mandibular condyles from both dentate and edentate humans and scanned with a micro-CT scanner. The bone volume fraction (BV/TV) of these specimens ranged from 7% to 30%. Next, the rod-like and plate-like trabeculae were identified with an especially developed algorithm. Plate volume fraction (PV/TV), rod volume fraction (RV/TV), plate thickness, rod thickness, number of plates, and number of rods were determined. In individual specimens, the thickness of the rods ranged from 40 Am to 180 Am, while the thickness of the plates ranged from 40 Am to 300 Am. In every specimen, the thickness of the plates was larger than the thickness of the rods. Statistical analysis revealed that PV/TV was proportional (r = 0.98, P b 0.001) and RV/TV inversely proportional (r = 0.45, P b 0.001) to BV/TV. Also the thickness of the plates correlated with BV/TV (r = 0.62, P b 0.001), while the thickness of the rods (mean = 90 Am, SD = 7 Am) remained constant (r = 0.09, P = 0.378). A four-fold reduction of the bone volume fraction was accompanied by a three-fold reduction of the number of plates and a 40% reduction of their thickness, but also by a three-fold increase in the number of rods and RV/TV. It was concluded that the effect of bone loss on plate-like trabeculae was opposite to its effect on rod-like trabeculae. Remarkably, the thickness of the rods (90 Am) was independent of the bone volume fraction. This suggests that there is a minimal thickness for trabeculae. D 2005 Elsevier Inc. All rights reserved.
Recursive 3D scene estimation with multiple camera pairs

In this paper we present the recursive estimation of static scenes with multiple stereo camera pairs. The estimation is based on a point cloud created from the disparities of the cameras. The focus lies on reducing erroneous measurements while obtaining a comparatively dense measurement in real time. While recursive scene estimation via stereo cameras has been presented several times before, the estimation has never been exploited in the measurement algorithm. We propose the usage of the current scene estimation in the disparity measurement to increase robustness, denseness and outlier rejection. A scene prior is created for each measurement using OpenGL taking occlusions, camera positions and existence probability into account. Additionally, multiple stereo pairs with different alignment provide distinct information. Each disparity measurement benefits from the complete scene knowledge the other stereo camera pairs provide. The creation of new points for the point cloud is based on a scaled version of the current scene and allows for simple trade-off between computational effort and point cloud denseness.
Macrophage Dysfunction Impairs Resolution of Inflammation in the Wounds of Diabetic Mice

Background Chronic inflammation is a characteristic feature of diabetic cutaneous wounds. We sought to delineate novel mechanisms involved in the impairment of resolution of inflammation in diabetic cutaneous wounds. At the wound-site, efficient dead cell clearance (efferocytosis) is a pre-requisite for the timely resolution of inflammation and successful healing. Methodology/Principal Findings Macrophages isolated from wounds of diabetic mice showed significant impairment in efferocytosis. Impaired efferocytosis was associated with significantly higher burden of apoptotic cells in wound tissue as well as higher expression of pro-inflammatory and lower expression of anti-inflammatory cytokines. Observations related to apoptotic cell load at the wound site in mice were validated in the wound tissue of diabetic and non-diabetic patients. Forced Fas ligand driven elevation of apoptotic cell burden at the wound site augmented pro-inflammatory and attenuated anti-inflammatory cytokine response. Furthermore, successful efferocytosis switched wound macrophages from pro-inflammatory to an anti-inflammatory mode. Conclusions/Significance Taken together, this study presents first evidence demonstrating that diabetic wounds suffer from dysfunctional macrophage efferocytosis resulting in increased apoptotic cell burden at the wound site. This burden, in turn, prolongs the inflammatory phase and complicates wound healing.
EEG-Based Detection of Starting and Stopping During Gait Cycle

Walking is for humans an essential task in our daily life. However, there is a huge (and growing) number of people who have this ability diminished or are not able to walk due to motor disabilities. In this paper, a system to detect the start and the stop of the gait through electroencephalographic signals has been developed. The system has been designed in order to be applied in the future to control a lower limb exoskeleton to help stroke or spinal cord injured patients during the gait. The brain-machine interface (BMI) training has been optimized through a preliminary analysis using the brain information recorded during the experiments performed by three healthy subjects. Afterward, the system has been verified by other four healthy subjects and three patients in a real-time test. In both preliminary optimization analysis and real-time tests, the results obtained are very similar. The true positive rates are [Formula: see text] and [Formula: see text] respectively. Regarding the false positive per minute, the values are also very similar, decreasing from 2.66 in preliminary tests to 1.90 in real-time. Finally, the average latencies in the detection of the movement intentions are 794 and 798[Formula: see text]ms, preliminary and real-time tests respectively.
Identification and Susceptibility Profile of Vaginal Candida Species to Antifungal Agents among Pregnant Women Attending the Antenatal Clinic of Thika District Hospital, Kenya

Fungal infections have emerged as a worldwide health care problem in recent years, owing to the extensive use of broad-spectrum antibiotics. We screened 104 pregnant women with symptoms of vaginal candidiasis in the antenatal clinic of Thika District Hospital, Kenya in order to identify vaginal Candida species and determine their susceptibility profile to commonly used antifungal drugs for treatment of the infection. The drugs tested were fluconazole, ketoconazole, itraconazole, clotrimazole and topical nystatin. Vaginal swabs were collected and subjected to mycological and biochemical tests for Candida species identification. Susceptibility profile of the identified vaginal Candida species to the antifungal drugs was carried out using broth micro-dilution minimum inhibiting concentration method based on the approved National Committee for Clinical Laboratory Standards (NCCLS, 2002) guidelines. Candida albicans was susceptible to most of the azoles drugs while the other species had varying responses. Candida krusei and Candida glabrata species isolated were resistant to fluconazole and ketoconazole. Candida albicans isolates had a high susceptibility to itraconazole (88.33%). Five percent (5%) of the isolates were susceptible in dose dependent (S-DD) with Minimum Inhibitory Concentrations (MICs) of 0.25 - 0.5 μg/ml while 11.67% of C. albicans isolates were resistant (MICs ≥ 1 μg/ml). Itraconazole resistance was highest among C. glabrata isolates (50%) while 32.14% were S-DD (MICs 0.25 - 0.5 μg/ml). Only 17.85% of the C. glabrata isolates were susceptible (MICs of ≤ 0.125 μg/ml). All isolates of Candida isolates were susceptible to itraconazole and clotrimazole except C. krusei which was 100% resistant to clotrimazole. All Candida species isolates had low susceptibility to topical nystatin except Candida parapsilosis that was 100% susceptible. Data also showed an emerging resistance of Candida krusei to most of the drugs used except itraconazole. The results of this study support the continued use of these antifungal drugs for the treatment of vaginal candidiasis in the pregnant women except topical nystatin.
On ill-posedness for the one-dimensional periodic cubic Schrodinger equation

We prove the ill-posedness in $ H^s(\T) $, $s<0$, of the periodic cubic Schr\"odinger equation in the sense that the flow-map is not continuous from $H^s(\T) $ into itself for any fixed $ t\neq 0 $. This result is slightly stronger than the one in \cite{CCT2} where the discontinuity of the solution map is established. Moreover our proof is different and clarifies the ill-posedness phenomena. Our approach relies on a new result on the behavior of the associated flow-map with respect to the weak topology of $ L^2(\T) $.
From Word Segmentation to POS Tagging for Vietnamese

This paper presents an empirical comparison of two strategies for Vietnamese Part-of-Speech (POS) tagging from unsegmented text: (i) a pipeline strategy where we consider the output of a word segmenter as the input of a POS tagger, and (ii) a joint strategy where we predict a combined segmentation and POS tag for each syllable. We also make a comparison between state-of-the-art (SOTA) feature-based and neural network-based models. On the benchmark Vietnamese treebank (Nguyen et al., 2009), experimental results show that the pipeline strategy produces better scores of POS tagging from unsegmented text than the joint strategy, and the highest accuracy is obtained by using a feature-based model.
Flavonoid silybin improves the response to radiotherapy in invasive bladder cancer

Conservative treatment for invasive bladder cancer (BC) involves a complete transurethral tumor resection combined with chemotherapy (CT) and radiotherapy (RT). The major obstacles of chemo‐radiotherapy are the addition of the toxicities of RT and CT, and the recurrence due to RT and CT resistances. The flavonoid Silybin (Sb) inhibits pathways involved in cell survival and resistance mechanisms, therefore the purpose of this paper was to study in vitro and in vivo, the ability of Sb to improve the response to RT, in two murine BC cell lines, with different levels of invasiveness, placing emphasis on radio‐sensitivity, and pathways involved in radio‐resistance and survival. In vitro, Sb radio‐sensitized murine invasive cells through the inhibition of RT‐induced NF‐κB and PI3K pathways, and the increase of oxidative stress, while non‐invasive cells did not show to be sensitized. In vivo, Sb improved RT‐response and overall survival in invasive murine tumors. As Sb is already being tested in clinical trials for other urological cancers and it improves RT‐response in invasive BC, these results could have translational relevance, supporting further research.
Clinical and genetic factors predicting Dravet syndrome in infants with SCN1A mutations

Objective: To explore the prognostic value of initial clinical and mutational findings in infants with SCN1A mutations. Methods: Combining sex, age/fever at first seizure, family history of epilepsy, EEG, and mutation type, we analyzed the accuracy of significant associations in predicting Dravet syndrome vs milder outcomes in 182 mutation carriers ascertained after seizure onset. To assess the diagnostic accuracy of all parameters, we calculated sensitivity, specificity, receiver operating characteristic (ROC) curves, diagnostic odds ratios, and positive and negative predictive values and the accuracy of combined information. We also included in the study demographic and mutational data of the healthy relatives of mutation carrier patients. Results: Ninety-seven individuals (48.5%) had Dravet syndrome, 49 (23.8%) had generalized/genetic epilepsy with febrile seizures plus, 30 (14.8%) had febrile seizures, 6 (3.5%) had focal epilepsy, and 18 (8.9%) were healthy relatives. The association study indicated that age at first seizure and frameshift mutations were associated with Dravet syndrome. The risk of Dravet syndrome was 85% in the 0- to 6-month group, 51% in the 6- to 12-month range, and 0% after the 12th month. ROC analysis identified onset within the sixth month as the diagnostic cutoff for progression to Dravet syndrome (sensitivity = 83.3%, specificity = 76.6%). Conclusions: In individuals with SCN1A mutations, age at seizure onset appears to predict outcome better than mutation type. Because outcome is not predetermined by genetic factors only, early recognition and treatment that mitigates prolonged/repeated seizures in the first year of life might also limit the progression to epileptic encephalopathy.
Evidence for a Two-Metal-Ion Mechanism in the Cytidyltransferase KdsB, an Enzyme Involved in Lipopolysaccharide Biosynthesis

Lipopolysaccharide (LPS) is located on the surface of Gram-negative bacteria and is responsible for maintaining outer membrane stability, which is a prerequisite for cell survival. Furthermore, it represents an important barrier against hostile environmental factors such as antimicrobial peptides and the complement cascade during Gram-negative infections. The sugar 3-deoxy-d-manno-oct-2-ulosonic acid (Kdo) is an integral part of LPS and plays a key role in LPS functionality. Prior to its incorporation into the LPS molecule, Kdo has to be activated by the CMP-Kdo synthetase (CKS). Based on the presence of a single Mg2+ ion in the active site, detailed models of the reaction mechanism of CKS have been developed previously. Recently, a two-metal-ion hypothesis suggested the involvement of two Mg2+ ions in Kdo activation. To further investigate the mechanistic aspects of Kdo activation, we kinetically characterized the CKS from the hyperthermophilic organism Aquifex aeolicus. In addition, we determined the crystal structure of this enzyme at a resolution of 2.10 Å and provide evidence that two Mg2+ ions are part of the active site of the enzyme.
Distinguishing the Biomass Allocation Variance Resulting from Ontogenetic Drift or Acclimation to Soil Texture

In resource-poor environments, adjustment in plant biomass allocation implies a complex interplay between environmental signals and plant development rather than a delay in plant development alone. To understand how environmental factors influence biomass allocation or the developing phenotype, it is necessary to distinguish the biomass allocations resulting from environmental gradients or ontogenetic drift. Here, we compared the development trajectories of cotton plants (Gossypium herbaceum L.), which were grown in two contrasting soil textures during a 60-d period. Those results distinguished the biomass allocation pattern resulting from ontogenetic drift and the response to soil texture. The soil texture significantly changed the biomass allocation to leaves and roots, but not to stems. Soil texture also significantly changed the development trajectories of leaf and root traits, but did not change the scaling relationship between basal stem diameter and plant height. Results of nested ANOVAs of consecutive plant-size categories in both soil textures showed that soil gradients explained an average of 63.64–70.49% of the variation of biomass allocation to leaves and roots. Ontogenetic drift explained 77.47% of the variation in biomass allocation to stems. The results suggested that the environmental factors governed the biomass allocation to roots and leaves, and ontogenetic drift governed the biomass allocation to stems. The results demonstrated that biomass allocation to metabolically active organs (e.g., roots and leaves) was mainly governed by environmental factors, and that biomass allocation to metabolically non-active organs (e.g., stems) was mainly governed by ontogenetic drift. We concluded that differentiating the causes of development trajectories of plant traits was important to the understanding of plant response to environmental gradients.
Petamenophis (Padiamenemipet), an Egyptian Child Mummy Protected for Eternity: Revelation by Multidetector Computed Tomography

Objective The objective of our work was to report the most recent findings obtained with multidetector computed tomography of a child mummy from the Roman period (119–123 CE) housed at the Egyptian Museum in Turin, Italy. Methods Multidetector computed tomography and postprocessing were applied to understand the embalming techniques, the nature of a foreign object, and anthropometrical values. The information was compared with that from other mummies that were buried in the same tomb, but today housed in different museums. Results New information regarding the embalming technique was revealed. Multidetector computed tomography allowed the identification of a knife-like metallic object, probably an amulet for the child's protection in the afterlife. Conclusions Multidetector computed tomography and image postprocessing confirm their valuable role in noninvasive studies in ancient mummies and provided evidence of a unique cultural practice in the late history of Ancient Egypt such as placing a knife possibly as an amulet.