Miracle-dz/UniFAR-FTUs huggingface dataset:
Risk Factors of Impaired Pulmonary Function in Arthrogryposis Multiplex Congenital Patients With Concomitant Scoliosis: A Comparison With Adolescent Idiopathic Scoliosis

Study Design. A retrospective study. Objective. To investigate the severity of pulmonary function impairment for arthrogryposis multiplex congenital (AMC) patients with concomitant scoliosis and to determine risk factors associated with the impaired pulmonary function in these patients. Summary of Background Data. AMC patients are generally believed to have impaired pulmonary function. However, the severity of respiratory morbidity and the associated risk factors have not been reported. Methods. The pulmonary function tests data including the percentage predicted values of forced vital capacity (%FVC), forced expiratory volume in 1 second (%FEV1), and the ratio of FEV1 to FVC (%FEV1/FVC) were reviewed and compared for 48 AMC patients with secondary scoliosis and 48 patients with adolescent idiopathic scoliosis. The radiographic parameters of coronal and sagittal plane deformities and body mass index (BMI) were measured and correlated with impaired pulmonary function in these AMC patients. Results. AMC patients with concomitant scoliosis had significant lower mean %FVC, %FEV1, and %FEV1/FVC than adolescent idiopathic scoliosis patients (48.8 vs. 70.3 for %FVC, P < 0.001; 45.3 vs. 69.7 for %FEV1, P < 0.001; 92.1 vs. 96.9 for %FEV1/FVC, P < 0.05, respectively). Seventy percent of AMC patients had severe pulmonary function impairment. A positive correlation was found between BMI and %FVC and %FEV1 (P < 0.01) and between hypokyphosis and %FVC and %FEV1 (P < 0.05). A negative correlation was found between coronal angle and pulmonary function (P < 0.05). Multiple regression analysis showed that all of the three variables were independent predictors associated with a reduced pulmonary function. With a combination of these variables, the multiple regression model could account for 38.7% of the variance in %FVC and 41.5% in %FEV1. Conclusion. There exists severe impairment of pulmonary function in AMC patients with concomitant scoliosis. The scoliotic curve, hypokyphosis, and BMI were independent risk factors associated with the pulmonary dysfunction in these patients. As the majority of the variability of impaired pulmonary function tests are still poorly understood, more risk factors await to be uncovered in future studies. Level of Evidence: 4
Merging Microsatellite Data

Genotype calling procedures vary from laboratory to laboratory for many microsatellite markers. Even within the same laboratory, application of different experimental protocols often leads to ambiguities. The impact of these ambiguities ranges from irksome to devastating. Resolving the ambiguities can increase effective sample size and preserve evidence in favor of disease-marker associations. Because different data sets may contain different numbers of alleles, merging is unfortunately not a simple process of matching alleles one to one. Merging data sets manually is difficult, time-consuming, and error-prone due to differences in genotyping hardware, binning methods, molecular weight standards, and curve fitting algorithms. Merging is particularly difficult if few or no samples occur in common, or if samples are drawn from ethnic groups with widely varying allele frequencies. It is dangerous to align alleles simply by adding a constant number of base pairs to the alleles of one of the data sets. To address these issues, we have developed a Bayesian model and a Markov chain Monte Carlo (MCMC) algorithm for sampling the posterior distribution under the model. Our computer program, MicroMerge, implements the algorithm and almost always accurately and efficiently finds the most likely correct alignment. Common allele frequencies across laboratories in the same ethnic group are the single most important cue in the model. MicroMerge computes the allelic alignments with the greatest posterior probabilities under several merging options. It also reports when data sets cannot be confidently merged. These features are emphasized in our analysis of simulated and real data.
Systemic steroids in the treatment of psoriasis: what is fact, what is fiction?

Background The use of systemic steroids in the treatment of psoriasis is not recommended by dermatological textbooks and guidelines because of the risk of disease deterioration after dose reduction or withdrawal. In contrast to these recommendations, a recent analysis using data from a German nationwide healthcare insurance revealed that systemic steroids were the most frequently prescribed drugs for psoriasis by general practitioners, internal medicine physicians and dermatologists.
PScout: analyzing the Android permission specification

Modern smartphone operating systems (OSs) have been developed with a greater emphasis on security and protecting privacy. One of the mechanisms these systems use to protect users is a permission system, which requires developers to declare what sensitive resources their applications will use, has users agree with this request when they install the application and constrains the application to the requested resources during runtime. As these permission systems become more common, questions have risen about their design and implementation. In this paper, we perform an analysis of the permission system of the Android smartphone OS in an attempt to begin answering some of these questions. Because the documentation of Android's permission system is incomplete and because we wanted to be able to analyze several versions of Android, we developed PScout, a tool that extracts the permission specification from the Android OS source code using static analysis. PScout overcomes several challenges, such as scalability due to Android's 3.4 million line code base, accounting for permission enforcement across processes due to Android's use of IPC, and abstracting Android's diverse permission checking mechanisms into a single primitive for analysis. We use PScout to analyze 4 versions of Android spanning version 2.2 up to the recently released Android 4.0. Our main findings are that while Android has over 75 permissions, there is little redundancy in the permission specification. However, if applications could be constrained to only use documented APIs, then about 22% of the non-system permissions are actually unnecessary. Finally, we find that a trade-off exists between enabling least-privilege security with fine-grained permissions and maintaining stability of the permission specification as the Android OS evolves.
A benchmark for D2D in cellular networks: The importance of information

Many new mobile applications create traffic among cellular users. We define intra-cellular traffic as the traffic from one cellular user to another user in the same cellular network. This type of traffic introduces new challenges for cellular network operators. Most work in the literature focuses on the possibility to utilize the direct links between those users, if they are close to each other (this is called device-to-device (D2D) communication), to by-pass the base station. However, implementing D2D is not easy, especially because detecting that a traffic is intracellular is difficult. In this paper, we assume that we know how to detect if a traffic is intra-cellular or not and focus on designing a type-aware scheduler (i.e., a scheduler which has the information on the type of traffic) in a case where direct communications between users is not enabled. This scheduler can be seen as the benchmark against the case where direct communications are allowed. We show that performance gain can be obtained by jointly scheduling the uplink and downlink with respect to the case where the scheduler is blind to the types. We show for a homogeneous network that when the traffic types are known to a scheduler, a significant performance gain (up to 28%) can be achieved compared to the case where the traffic types are not known. We also analyze heterogeneous networks that consist of macro cells and small cells and show that up to a 36% performance gain can be obtained by performing type-aware user association jointly with user scheduling.
Diversity of the Bacterial Microbiome in the Roots of Four Saccharum Species: S. spontaneum, S. robustum, S. barberi, and S. officinarum

Endophytic bacteria are nearly ubiquitously present in the internal tissues of plants, and some endophytes can promote plant growth. In this study, we sampled the roots of four ancestral species of sugarcane (two genotypes per species) and two sugarcane cultivars, and used 16S rRNA and nifH gene sequencing to characterize the root endophytic bacterial communities and diazotroph diversity. A total of 7,198 operational taxonomic units (OTUs) were detected for the endophytic bacteria community. The endophytic bacterial communities exhibited significantly different α- and β-diversities. From the 202 detected families in the sugarcane roots, a core microbiome containing 13 families was identified. The nifH gene was successfully detected in 9 of 30 samples from the four sugarcane species assayed, and 1,734 OTUs were merged for endophytic diazotrophs. In the tested samples, 43 families of endophytic diazotrophs were detected, and six families showed differences across samples. Among the 20 most abundant detected genera, 10 have been reported to be involved in nitrogen fixation in sugarcane. These findings demonstrate the diversity of the microbial communities in different sugarcane germplasms and shed light on the mechanism of biological nitrogen fixation in sugarcane.
An appraisal of moulting on post-moult egg production and egg weight distribution in white layer hens; meta-analysis

ABSTRACT 1. The aim of this study was to establish how different moulting methods and body weight losses influenced post-moult performance and USDA egg weight distribution. 2. Data on 5 laying flocks (#34–38) of the North Carolina Layer Performance and Management Test were used in this meta-analysis. 3. The moulting methods were non-fasted moulted (NF), short feed restricted (SF), 13-d feed restricted (FR), non-anorexic moult programme (NA), non-anorexic moult programme with low sodium (NALS) as well as non-moulting programme as control treatment. The percentages of targeted body weight loss during the moulting period were 20, 24, 25 and 30% of body weight at the end of the first egg production cycle. 4. Post-moult egg production and egg mass were influenced by all moulting methods. Maximum increase in post-moult egg production rate and egg mass occurred with FR and NF programmes, respectively, at 30% of body weight loss, compared to non-moulted hens. Non-fasting methods reduced mortality rate more effectively than fasting methods. 5. Moulting resulted in increases in percentage of grade A and decreases in percentage of grade B eggs. Non-fasting methods increased percentage of grade A eggs more effectively than fasting methods. Percentage of cracked eggs decreased in moulted rather than non-moulted hens and the lowest rate was associated with the NA programme. 6. Post-moult egg weight was not significantly influenced by moulting methods. However, percentage of body weight reduction affected egg weight. The optimum increment in egg weight was achieved by 24% body weight reduction. 7. Overall, non-fasting methods resulted in similar egg production compared with fasting methods. Considering post-moult mortality and USDA egg weight distribution, non-fasting methods, especially NF and NA programmes, performed much better than fasting methods, indicating that non-fasting moulting methods, which are better for animal welfare, are effective alternatives to fasting methods.
The Effect of Error-in-Confounders on the Estimation of the Causal Parameter When Using Marginal Structural Models and Inverse Probability-of-Treatment Weights: A Simulation Study

Abstract We performed an empirical study to evaluate the effect of mismeasured continuous confounders on the estimation of the causal parameter when using marginal structural models and inverse probability-of-treatment weighting. By executing an extensive simulation using 500 randomly generated parameter value combinations within a defined space, we observed the well-understood effects of attenuation and augmentation, and two unanticipated effects: null effects and sign reversals. We implemented a secondary empirical study to further investigate the sign reversal effect. We use the results of our study to identify conceptual similarities between the analytic and empirical results for multivariable linear and logistic regression, and our empirical results. Through this synthesis, we have been able to suggest feasible directions of research as well as outline the form of expected results.
EVALUATION OF PATIENT EXPOSURE IN FAST kVp SWITCHING DUAL ENERGY COMPUTED TOMOGRAPHY: PHANTOM STUDY

The aim of this study was to evaluate the suitability of size specific dose estimates (SSDE) to estimate patient dose in Fast kVp switching dual energy CT. An anthropomorphic phantom (RAN-110) was repeatedly scanned (chest, abdomen and the pelvis) using a 64 detector row MDCT (Discovery CT750 HD, GE Healthcare, Milwaukee, WI, USA) with various CT parameters, including Fast kVp switching. Dosimetry was performed using thermo-luminescent dosimeters, positioned both superficially and within the phantom. SSDE was calculated for all slices of the anthropomorphic phantom using both the localiser and axial images. In Fast kVp switching, SSDE underestimated the measured absorbed dose for the chest/abdomen region ~35% at the maximum, but were in closer agreement for the pelvic region about within 10%. In single energy techniques, SSDE could not be applied in the estimation of organ doses, but in Fast kVp switching dual energy techniques, SSDE could be applied for anatomical regions with larger thicknesses.
Procedural Justice, Legitimacy Beliefs, and Moral Disengagement in Emerging Adulthood: Explaining Continuity and Desistance in the Moral Model of Criminal Lifestyle Development

Research has shown that procedural justice reliably predicts future offending behavior, although there is some indication that this may be more a function of legitimacy beliefs than of procedural justice per se. The current study sought to explain continuity and desistance in the moral model of criminal lifestyle development by comparing legitimacy beliefs, procedural justice, and moral disengagement as initiators and mediators of pathways leading to early adult offending. It was hypothesized that low legitimacy beliefs but not perceived procedural (in)justice or moral disengagement would initiate, and that moral disengagement but not low legitimacy beliefs or procedural injustice would mediate, the effect of low legitimacy beliefs on subsequent offending behavior. This hypothesis was tested in a group of 1,142 young adult males (age range = 18 to 20) from the Pathways to Desistance study (Mulvey, 2012). Results showed that as predicted, the target pathway (legitimacy → moral disengagement → offending) but none of the control pathways achieved a significant indirect effect. Hence, 1 way legitimacy beliefs reduce future offending and lead to desistance is by inhibiting moral disengagement. Besides the theoretical implications of these results, there is also the suggestion that legitimacy beliefs and moral disengagement should be considered for inclusion in secondary prevention and criminal justice intervention programs.
Patient Anxiety and Conscious Surgery

The amount of surgery undertaken on the conscious patient is increasing. However, many patients are anxious and resistant to such surgery. Patients (n=214) were surveyed to determine their related apprehensions. Being awake, feeling or seeing the body cut open and experiencing pain all increased anxiety. The potential for insufficient information provision was also a source of concern. Formal management of intraoperative apprehension may help limit anxiety and expel apparent misapprehensions.
Factors Influencing Communication with Doctors via the Internet: A Cross-Sectional Analysis of 2014 HINTS Survey

ABSTRACT Based on Street’s (2003) ecological framework of communication in medical encounters, this study examined personal, interpersonal, and media factors that could influence patients’ use of the Internet to communicate with doctors. Results from data analysis of responses from the 2014 Health Information National Trends Survey showed that patient activation and ease of Internet access were two positive predictors of online doctor-patient communication. In addition, patients’ trust in doctors positively moderated the relationships between patient activation and online doctor-patient communication, and between perceived health status and online doctor-patient communication. Finally, the quality of patients’ past experiences communicating with doctors had a positive moderation effect on the association between health information seeking behavior and online doctor-patient communication. Implications and limitations are discussed.
Soft‐tissue dehiscence coverage at peri‐implant sites

Soft-tissue dehiscence at the facial aspect of an osteointegrated implant is a common complication which impacts on the final esthetic result. The etiology and ways of diagnosing this condition are still controversial. Many factors seem to influence the position of the peri-implant soft-tissue margin, and some of these have been studied more carefully than others. Various surgical and combination surgical-prosthetic approaches have been described to treat soft-tissue dehiscence, with the latter appearing to be more predictable. This paper focuses on the factors affecting peri-implant soft-tissue margins and describes the different treatment approaches, reported in the literature, to treat buccal soft-tissue dehiscence, with more focus on the prosthetic-surgical-prosthetic approach.
Diabetes may affect the expression of matrix metalloproteinases and their inhibitors more than smoking in chronic periodontitis

BACKGROUND AND OBJECTIVE No previous study has directly compared the levels of matrix metalloproteinases (MMPs) and tissue inhibitor of metalloproteinases (TIMPs) between smokers and individuals with diabetes mellitus (DM) with periodontitis. Therefore, the aim of this study was to evaluate the gene expression of MMP-1, MMP-2, MMP-8, MMP-9, TIMP-1 and TIMP-2 in tissues with chronic periodontitis (ChP) of smokers and individuals with type 2 DM. MATERIAL AND METHODS Gingival biopsies were harvested from: non-smokers and non-diabetic individuals with ChP (n = 18) (ChP group); non-diabetic smokers (≥ 10 cigarettes per day for at least the past 5 years) with ChP (n = 18) (SChP group); non-smoking individuals with type 2 diabetes (glycated hemoglobin levels ≥ 7.5%) and ChP (n = 18) (DMChP group). The tissue levels of mRNA of MMP-1, MMP-2, MMP-8, MMP-9, TIMP-1 and TIMP-2 were evaluated by quantitative real-time polymerase chain reaction. RESULTS The MMP-8 expression was the lowest in the ChP group (p < 0.05). The DMChP group presented increased mRNA levels of MMP-2 and MMP-9, when compared to the SChP group (p < 0.05). MMP-1 expression and the MMP-1/TIMP-1, MMP-2/TIMP-1, MMP-8/TIMP-1, MMP-9/TIMP-1, MMP-1/TIMP-2 and MMP-2/TIMP-2 ratios were higher in the DMChP group than in the ChP and SChP groups (p < 0.05). The DMChP group presented lower mRNA levels of TIMP-1 than the ChP group (p < 0.05). The MMP-8/TIMP-2 ratio was the highest in the SChP group (p < 0.05). CONCLUSION Uncontrolled type 2 DM upregulates the ratio of MMP/TIMPs in sites with ChP more than smoking, which may contribute to a greater extracellular matrix degradation and periodontal breakdown in DM-related periodontitis.
Simulations of Hydroxyapatite Nanocrystals for HRTEM Images Calculations

Hydroxyapatite (HA, Ca10(PO4)6(OH)2) is one of the most important biomaterials used in bone regeneration therapies due to their chemical properties are very similar to the inorganic phase found in bone tissues. The direct observation of the ultrastructure of HA is very important in the comprehension of their nucleation and interactions with the molecules involved in bone formation. High-resolution Transmission Electron Microscopy (HRTEM) is a currently technique used for this task. However, the interpretation of the images is not straightforward and needs the use of softwares dedicated to high-resolution images simulations. This work presents the applicability of MEGACELL software in the analysis of HRTEM images of HA nanoparticles. MEGACELL is the most newly software, developed to construct nanocrystals models for HRTEM multislice simulations. The output files generated by MEGACELL are raw data format (.xyz), containing all the atomic positions, as well as input files compatible with JEMS (Java Electron Microscopy Software) format files. High-resolution images were acquired using a JEM 3010 URP microscope, with a LaB6 thermionic electron gun operating at 300 kV, with a point-to-point resolution of 0.17 nm and a CCD Gatan 794SC multiscan digital camera, attached to the DigitalMicrographTM software for recording and image processing. Electron microscopy samples were prepared by dropping HA powder on copper TEM grids. HRTEM experimental images of HA particles, orientated along different zone axes, were interpreted applying the MEGACELL software to construct HA nanocrystal models and the multislice method to simulated them. MEGACELL improves the extraction of the ultrastructural features and facilitates a better interpretation of the phase-contrast images.
Unpacking the Black Box of Wilderness Therapy

Despite considerable progress within wilderness and adventure therapy research over the last decade, researchers are still unable to precisely answer why, how, and for whom this treatment modality works. There is also a need for more knowledge regarding the circumstances under which the treatment does not appear to be effective. In this realist synthesis, we attempt to unpack this “black box” of wilderness therapy more specifically, defined as a specialized approach to mental health treatment for adolescents. Through a focused review of the primary qualitative wilderness therapy studies, empirical findings are used to test and refine a key program theory. The synthesis results in a proposed wilderness therapy clinical model and offers informed implications for future theory development, research, and practice.
High-Efficiency Charge Pumps for Low-Power On-Chip Applications

This paper proposes charge pumps with improved power efficiency suitable for low-power on-chip applications. Undesired charge transfer, which has a direction opposite to that of the intended current flow, presents a significant source of power loss in charge pumps. The proposed charge pump circuit utilizes charge transfer switches with a complementary branch scheme to significantly reduce undesired charge transfer, thereby improving power efficiency and increasing output voltage effectively. An optimized gate control strategy is applied to further decrease the power loss caused by undesired charge transfer. Simulations of 8-stage charge pumps in a $0.13~\mu \text{m}$ standard CMOS technology show that for an input supply voltage of 1.2 V, the proposed charge pump circuit reaches a power efficiency of 58.72% with an output voltage of 7.45 V, when delivering 5-mA load current, and is able to maintain a power efficiency of around 50% and an output voltage of over 5 V as the load current increases to 10 mA. Compared with the other charge pump circuits, the simulation results demonstrate better performance of proposed charge pump circuits in terms of both voltage pumping gain and power efficiency.