Miracle-dz/UniFAR-FTUs huggingface dataset:
Increased protein kinase C theta in skeletal muscle of diabetic patients.

In this study we have investigated whether protein kinase C (PKC) protein and activity are increased in skeletal muscle of human diabetic patients. The protein content of different PKC isoforms (beta, Theta, epsilon, delta, mu, and zeta) in the particulate fraction was measured, using Western analysis, in human rectus abdominus skeletal muscle from obese (hyperinsulinemic, normoglycemic) and obese diabetic (hyperinsulinemic, hyperglycemic) subjects. PKC Theta protein content was significantly higher in the particulate fraction of muscle from diabetic patients compared with the nondiabetic controls. PKC Theta was immunoprecipitated and its activity was measured in muscle from diabetic and nondiabetic controls. There was a significant increase in PKC Theta activity in muscle from diabetic patients compared with muscle from nondiabetic controls. Therefore, both PKC Theta protein content and activity were significantly increased in the particulate fraction in muscle from diabetic patients, suggesting the involvement of this isoform in diabetes. Most of the PKC Theta protein was found in the cytosol. There was no change in cytosolic PKC Theta protein content in muscle from diabetic patients compared with muscle from nondiabetic controls. Thus, the increase in particulate-associated PKC Theta was likely due to translocation and activation rather than an increase in protein mass.
Short-Run Dynamics in Bank Credit: Assessing Nonlinearities in Procyclicality

This paper explores whether the procyclicality of private credit changes during the business cycle. To this end, we rely on the estimation of smooth transition regression models for a sample of 17 OECD countries over the 1986–2010 period. Our findings show that credit procyclicality is nonlinear, depending on economic conditions. More specifically, credit is highly procyclical in extreme – booms and busts – regimes in Canada, the UK and the US, while procyclicality is less pronounced in one or both extreme regimes in Australia, Belgium, France, Finland, the Netherlands, Norway, and Spain. Our results also emphasize the importance of financial factors in explaining the short-run behavior of private credit.
Potential mapping technique for the detection of corrosion in reinforced concrete structures: Investigation of parameters influencing the measurement and determination of the reliability of the method

The potential distribution around a corrosion site in concrete was modeled by means of a simple mathematical model for a rod‐shaped anode. Based on these calculations the influencing parameters and the limits of the potential mapping technique were determined. They demonstrate that the location of anodes depends on the anode length, the concrete coverage, and the measuring grid. Moreover small anodes with less than 1 cm length are virtually impossible to localize. Investigations on concrete elements without reinforcing steel showed that heterogeneous water content and chloride distribution can result in potential differences of up to 150 mV on the concrete surface. This effect was related to the streaming potential and the diffusion overpotential in the concrete. In order to determine the reliability of the potential mapping technique in the field application, the concrete on a tunnel wall was removed after the measurement of the potential distribution and the corrosion loss of the steel was determined. It was found that all corrosion sites with more than 2 mm material loss were detected by the potential mapping technique. Only some smaller corrosion sites were not found. Based on this investigation, the applicability of the potential mapping technique for detecting corrosion sites was confirmed. The observed high reliability of the potential mapping technique can be explained by a combination of the heterogeneous wetting of the concrete, the inhomogeneous contamination with chloride, and the macrocell formation.
The Critically Endangered western chimpanzee declines by 80%

African large mammals are under extreme pressure from unsustainable hunting and habitat loss. Certain traits make large mammals particularly vulnerable. These include late age at first reproduction, long inter‐birth intervals, and low population density. Great apes are a prime example of such vulnerability, exhibiting all of these traits. Here we assess the rate of population change for the western chimpanzee, Pan troglodytes verus, over a 24‐year period. As a proxy for change in abundance, we used transect nest count data from 20 different sites archived in the IUCN SSC A.P.E.S. database, representing 25,000 of the estimated remaining 35,000 western chimpanzees. For each of the 20 sites, datasets for 2 different years were available. We estimated site‐specific and global population change using Generalized Linear Models. At 12 of these sites, we detected a significant negative trend. The estimated change in the subspecies abundance, as approximated by nest encounter rate, yielded a 6% annual decline and a total decline of 80.2% over the study period from 1990 to 2014. This also resulted in a reduced geographic range of 20% (657,600 vs. 524,100 km2). Poverty, civil conflict, disease pandemics, agriculture, extractive industries, infrastructure development, and lack of law enforcement, are some of the many reasons for the magnitude of threat. Our status update triggered the uplisting of the western chimpanzee to “Critically Endangered” on the IUCN Red List. In 2017, IUCN will start updating the 2003 Action Plan for western chimpanzees and will provide a consensus blueprint for what is needed to save this subspecies. We make a plea for greater commitment to conservation in West Africa across sectors. Needed especially is more robust engagement by national governments, integration of conservation priorities into the private sector and development planning across the region and sustained financial support from donors.
Characterization of Cavitation in Ultrasonic or Megasonic Irradiated Gas Saturated Solutions Using a Hydrophone

Emerging ultrasonic and megasonic cleaning demands in various applications (solar cell, storage devices, wafer and mask cleaning, etc.) dictate the need to understand the acoustic cavitation under different operating conditions to optimize efficiency of cleaning and reduce damage. Major parameters that affect cavitation include frequency of the sound field, operating power of the transducer and the cleaning chemistry. Previous studies have reported the use of common techniques such as multi-bubble sonoluminescence [1] and sono-electrochemistry [2] to understand acoustic cavitation. The disadvantage with sonoluminescence technique is that it characterizes cavitation mainly in the bulk of the solution, which may not be pertinent to wafer cleaning applications where the interest is in understanding cavitation phenomena close to the wafer surface. Although, sono-electrochemical techniques employing microelectrode are capable of measuring cavitation in the vicinity of a solid surface, they are limited to measurements on an extremely small area due to the miniscule size (5-25 μm) of the electrode. In this context, hydrophone measurements offer significant benefit as they can be taken near a solid surface as well as on a relative large area (1-2 mm diameter) of the pressure sensitive tip.
Validity of urinary monoamine assay sales under the “spot baseline urinary neurotransmitter testing marketing model”

Spot baseline urinary monoamine assays have been used in medicine for over 50 years as a screening test for monoamine-secreting tumors, such as pheochromocytoma and carcinoid syndrome. In these disease states, when the result of a spot baseline monoamine assay is above the specific value set by the laboratory, it is an indication to obtain a 24-hour urine sample to make a definitive diagnosis. There are no defined applications where spot baseline urinary monoamine assays can be used to diagnose disease or other states directly. No peer-reviewed published original research exists which demonstrates that these assays are valid in the treatment of individual patients in the clinical setting. Since 2001, urinary monoamine assay sales have been promoted for numerous applications under the “spot baseline urinary neurotransmitter testing marketing model”. There is no published peer-reviewed original research that defines the scientific foundation upon which the claims for these assays are made. On the contrary, several articles have been published that discredit various aspects of the model. To fill the void, this manuscript is a comprehensive review of the scientific foundation and claims put forth by laboratories selling urinary monoamine assays under the spot baseline urinary neurotransmitter testing marketing model.
Spider and Leafhopper (Erythroneura spp.) Response to Vineyard Ground Cover

Abstract Ground cover is used in some vineyards to improve soil structure and help manage insect pests; previous studies have shown lower leafhopper (Erythroneura spp.) densities on vines grown with ground cover. We undertook a 2-yr study to determine why ground cover is associated with reduced leafhopper densities. Ground cover consisted of a fall-planted cover crop of purple vetch (Vicia benghalensis) and barley (Hordeum vulgare), which senesced in May and was replaced by a complex of resident vegetation comprised primarily of the grasses Echinochloa spp. , Digitaria sanguinalis, and Setaria spp. , as well as common knotweed (Polygonum aviculare). We compared three treatments during the growing season: Cover, No Cover, and Cover/Exclusion. Cover/Exclusion was similar to Cover treatment but with barriers to impede arthropod movement between ground cover and vines. We measured leafhopper density and egg parasitism, spider density and diversity, and grapevine vigor, and found that mid- and late-season leafhopper densities were significantly lower in Cover versus No Cover. Neither leafhopper egg parasitism nor spider density on the vines or ground cover could explain these differences; however, grapevine vigor was significantly lower in Cover than No Cover, and provides the best correlation to leafhopper density. Late-season leafhopper density was highest in the Exclusion treatment but cannot be explained by changes in grapevine vigor. Individual spider species composition and density on the grapevine canopy varied significantly among treatments: Trachelas pacificus (Chamberlin and Ivie) was higher in the Cover treatment, Hololena nedra Chamberlin and Ivie, Cheiracanthium inclusum (Hentz), and Neoscona oaxacensis (Keyserling) were lower in the Exclusion treatment, and Oxyopes spp. was higher in the Exclusion treatment. We suggest the lower densities of leafhoppers in the Cover treatment resulted from poorer host plant quality because of the competition between ground cover and grapevines. The higher late-season leafhopper densities in the Exclusion treatment may be due to changes in spider species composition, and subsequently, differences in rates of predation on leafhopper nymphs.
Near-Infrared Photodetectors in Evaporated Ge: Characterization and TCAD Simulations

Thermal evaporation of germanium (Ge) on silicon (Si) has proved to be a suitable technique for the fabrication of high responsivity, low-cost, near-infrared pn detectors. Such results rely on low-temperature diffusion of n-type dopants. The corresponding transport phenomena are quite involved and cannot be described by standard models for pn junctions because of rather large defect concentration density in the Ge layer. In this paper, we report on fabrication, characterization, and simulation of defected Ge on Si photodiodes. For the simulations, we developed a technology computer aided design model and hereby demonstrate its ability to reproduce the measured optoelectronic characteristics of the devices.
Methods for evaluating the potency and efficacy of antioxidants

Purpose of reviewThe aim of this article is to present a brief panorama of the most widely used methods and of new analytical approaches for evaluating antioxidant capacity and to discuss them in terms of advantages and drawbacks. Recent findingsTo date, many in-vitro tests are available from the chemical assay performed in a homogenous solution such as oxygen radical antioxidant capacity assay to more complex cell-based methods using exogenic probes to detect oxidation. In complement to these existing methods, novel approaches have recently been developed such as the conjugated autoxidizable triene assay implemented in emulsions and using tung oil as ultraviolet probe. SummaryThe complexity and diverse range of research topics investigated have led to the development of a multitude of tests, but unfortunately none of them are universal. Thus, one of the major challenges is to know which method is best suited for a particular application.
Fast biped walking with a reflexive controller and real-time policy searching

In this paper, we present our design and experiments of a planar biped robot ("RunBot") under pure reflexive neuronal control. The goal of this study is to combine neuronal mechanisms with biomechanics to obtain very fast speed and the on-line learning of circuit parameters. Our controller is built with biologically inspired sensor- and motor-neuron models, including local reflexes and not employing any kind of position or trajectory-tracking control algorithm. Instead, this reflexive controller allows RunBot to exploit its own natural dynamics during critical stages of its walking gait cycle. To our knowledge, this is the first time that dynamic biped walking is achieved using only a pure reflexive controller. In addition, this structure allows using a policy gradient reinforcement learning algorithm to tune the parameters of the reflexive controller in real-time during walking. This way RunBot can reach a relative speed of 3.5 leg-lengths per second after a few minutes of online learning, which is faster than that of any other biped robot, and is also comparable to the fastest relative speed of human walking. In addition, the stability domain of stable walking is quite large supporting this design strategy.
Effects of Improving Endurance of Concrete Structures by Wet Curing System

There has been no such engineering method until now to enable water curing in the vertical surfaces of concrete after the removal of formworks. The Aqua curtain wet curing system has been developed with the purpose of supplying the suf-ficient water on vertical surfaces of concrete. Aqua curtain prevents rusting of reinforcing bars by making the surface of concrete denser. In this way, Aqua Curtain also contributes to realize more resistant and long-life concrete structures. In other words, implementation of this system leads to improve the endurance and economy of concrete structures by reducing the consumption of resources.
Automatic identification of mixed bacterial species fingerprints in a MALDI-TOF mass-spectrum

MOTIVATION Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry has been broadly adopted by routine clinical microbiology laboratories for bacterial species identification. An isolated colony of the targeted microorganism is the single prerequisite. Currently, MS-based microbial identification directly from clinical specimens can not be routinely performed, as it raises two main challenges: (i) the nature of the sample itself may increase the level of technical variability and bring heterogeneity with respect to the reference database and (ii) the possibility of encountering polymicrobial samples that will yield a 'mixed' MS fingerprint. In this article, we introduce a new method to infer the composition of polymicrobial samples on the basis of a single mass spectrum. Our approach relies on a penalized non-negative linear regression framework making use of species-specific prototypes, which can be derived directly from the routine reference database of pure spectra. RESULTS A large spectral dataset obtained from in vitro mono- and bi-microbial samples allowed us to evaluate the performance of the method in a comprehensive way. Provided that the reference matrix-assisted laser desorption/ionization time-of-flight mass spectrometry fingerprints were sufficiently distinct for the individual species, the method automatically predicted which bacterial species were present in the sample. Only few samples (5.3%) were misidentified, and bi-microbial samples were correctly identified in up to 61.2% of the cases. This method could be used in routine clinical microbiology practice.
Arginine Attenuates Methylglyoxal- and High Glucose-Induced Endothelial Dysfunction and Oxidative Stress by an Endothelial Nitric-Oxide Synthase-Independent Mechanism

Methylglyoxal (MG), a reactive metabolite of glucose, has high affinity for arginine and is a precursor of advanced glycation endproducts (AGEs). We tested the hypothesis that l-arginine, and its inactive isomer d-arginine, can efficiently scavenge MG, administered exogenously or produced endogenously from high glucose, and attenuate its harmful effects including endothelial dysfunction and oxidative stress by an endothelial nitric-oxide synthase (eNOS)-independent mechanism. We used isolated aortic rings from 12-week-old male Sprague-Dawley rats and cultured human umbilical vein endothelial cells (HUVECs) and vascular smooth muscle cells (VSMCs). Both d-arginine and l-arginine prevented the attenuation of acetylcholine-induced endothelium-dependent vasorelaxation by MG and high glucose. However, the inhibitory effect of the NOS inhibitor Nω-nitro-l-arginine methyl ester on vasorelaxation was prevented by l-arginine, but not d-arginine. MG and high glucose increased protein expression of arginase, a novel finding, NADPH oxidase 4, and nuclear factor κB and increased production of reactive oxygen species in HUVECs and VSMCs, which were attenuated by d-arginine and l-arginine. However, d-arginine and l-arginine did not attenuate MG- and high glucose-induced increased arginase activity in VSMCs and the aorta. d-Arginine and l-arginine also attenuated the increased formation of the MG-specific AGE Nε-carboxyethyl lysine, caused by MG and high glucose in VSMCs. In conclusion, arginine attenuates the increased arginase expression, oxidative stress, endothelial dysfunction, and AGE formation induced by MG and high glucose by an eNOS-independent mechanism. The therapeutic potential of arginine against MG- and high glucose-induced pathology merits further investigation.
In vitro immunotoxicity assessment of culture-derived extracellular vesicles in human monocytes

Abstract The potential to engineer extracellular vesicles (EV) that target specific cells and deliver a therapeutic payload has propelled a growing interest in their development as promising therapeutics. These EV are often produced from cultured cells. Very little is known about the interaction of cell culture-derived EV with cells of the immune system and their potential immunomodulatory effects. The present study evaluated potential immunotoxic effects of HEK293T-derived EV on the human monocytic cell lines THP-1 and U937. Incubation of cells with different doses of EV for 16–24 h was followed by assessment of cytotoxicity and cell function by flow cytometry. Changes in cell functionality were evaluated by the capacity of cells to phagocytize fluorescent microspheres. In addition, the internalization of labeled EV in THP-1 and U937 cells was evaluated. Exposure to EV did not affect the viability of THP-1 or U937 cells. Although lower doses of the EV increased phagocytic capacity in both cell lines, phagocytic efficiency of individual cells was not affected by EV exposure at any of the doses evaluated. This study also demonstrated that THP-1 and U937 monocytic cells are highly permissive to EV entry in a dose-response manner. These results suggest that, although HEK293T-derived EV are efficiently internalized by human monocytic cells, they do not exert a cytotoxic effect or alter phagocytic efficiency on the cell lines evaluated.
Is “mini-invasive” technique for iliac crest harvesting an alternative to cervical cage implant? An overview of a large personal experience

Background: Autograft bone provides an excellent substrate for multilevel arthrodesis after anterior discectomy and is inexpensive. However, the use of tricortical bone could increase the discomfort for the patient. Methods: We reviewed cases of cervical disc diseases operated on by a single neurosurgeon (AS), within the period June 2000-December 2011. A total of 221 patients were considered for the present study; 109 female, 112 male, averaging 49 years of age. Only patients who could be followed up for at least one year were included in the present study. The grafts obtained with the technique described are bi- (and not tri-) cortical, and always of sufficient size in order to fit two spaces if necessary. Results: The technique is not associated with long-term significant donor site pain except for a striking minority of patients, it shortens the hospital stay, it offers comparable results to the published surgical series in which cage and/or modern implants are used. Conclusions: Autograft bone can be reasonably considered as one of the possible alternatives to be used in the surgical management of cervical disk disease.
ATGL and DGAT1 are involved in the turnover of newly synthesized triacylglycerols in hepatic stellate cells[S]

Hepatic stellate cell (HSC) activation is a critical step in the development of chronic liver disease. During activation, HSCs lose their lipid droplets (LDs) containing triacylglycerol (TAG), cholesteryl esters (CEs), and retinyl esters (REs). Here we aimed to investigate which enzymes are involved in LD turnover in HSCs during activation in vitro. Targeted deletion of the Atgl gene in mice HSCs had little effect on the decrease of the overall TAG, CE, and RE levels during activation. However, ATGL-deficient HSCs specifically accumulated TAG species enriched in PUFAs and degraded new TAG species more slowly. TAG synthesis and levels of PUFA-TAGs were lowered by the diacylglycerol acyltransferase (DGAT)1 inhibitor, T863. The lipase inhibitor, Atglistatin, increased the levels of TAG in both WT and ATGL-deficient mouse HSCs. Both Atglistatin and T863 inhibited the induction of activation marker, α-smooth muscle actin, in rat HSCs, but not in mouse HSCs. Compared with mouse HSCs, rat HSCs have a higher turnover of new TAGs, and Atglistatin and the DGAT1 inhibitor, T863, were more effective. Our data suggest that ATGL preferentially degrades newly synthesized TAGs, synthesized by DGAT1, and is less involved in the breakdown of preexisting TAGs and REs in HSCs. Furthermore a large change in TAG levels has modest effect on rat HSC activation.