Miracle-dz/UniFAR-FTUs huggingface dataset:
Mortality Experience of a Low-Income Population With Young-Onset Diabetes

OBJECTIVE In young-onset diabetes, insulin therapy status is a rough marker of diabetes type. We describe the mortality experience of a low-income, predominantly minority population with diabetes diagnosed before age 30 years, stratified by insulin therapy. RESEARCH DESIGN AND METHODS A total of 1,098 adults aged 40–79 years (median 49) diagnosed with diabetes before age 30 years and 49,914 without diabetes were recruited from community health centers. Individuals with diabetes were categorized by insulin therapy at baseline: group A, insulin therapy only; group B, insulin therapy and an oral hypoglycemic agent; and group C, no insulin therapy. Cox models were used to compute hazard ratios (HRs) and 95% CI for cause-specific mortality based on both underlying and contributing causes of death from death certificates. RESULTS During follow-up (mean 3.9 years), 15.0, 12.5, and 7.3% of groups A, B, and C, respectively, and 4.6% without diabetes died. Compared with individuals without diabetes, HRs (CI) for all-cause mortality were 4.3 (3.4–5.6), 4.2 (2.8–6.3), and 2.0 (1.4–2.8) in groups A, B, and C, respectively. The leading cause of death was renal failure (end-stage renal disease [ESRD]) in group A, ESRD and coronary artery disease (CAD) in group B, and CAD in group C and individuals without diabetes. HRs for these conditions were at least twice as high as the HRs for all-cause mortality, reaching 17.3 (10.2–29.3), 17.9 (8.3–38.7), and 5.1 (2.3–11.7) in groups A, B, and C, respectively, for ESRD. CONCLUSIONS Excess mortality persists among people with young-onset diabetes of long duration, with ESRD and CAD as the leading contributors to mortality.
Specifying attentional top-down influences on subsequent unconscious semantic processing

Classical theories assume that unconscious automatic processes are autonomous and independent of higher-level cognitive influences. In contrast, we propose that automatic processing depends on a specific configuration of the cognitive system by top-down control. In 2 experiments, we tested the influence of available attentional resources and previously activated task sets on masked semantic priming in a lexical decision task. In Experiment 1, before masked prime presentation, participants were engaged in an easy or hard primary task that differentially afforded attentional resources. Semantic priming was attenuated when the primary task was hard, that is, when only little attentional resources were available. In Experiment 2, a semantic or perceptual induction task differentially modulated subsequent masked semantic priming. Hence, unconscious automatic processing depends on the availability of attentional resources and is susceptible to top-down control.
HIV Load Testing with Small Samples of Whole Blood

ABSTRACT Access to human immunodeficiency virus (HIV) viral load (VL) testing is of paramount importance for the success of antiretroviral therapy treatment campaigns throughout the world. In many countries, limited laboratory infrastructure and transport capacities preclude a substantial number of people infected with HIV from accessing the necessary testing. Point-of-care diagnostic testing methods for those with HIV infection provide a compelling solution to addressing this challenge. To facilitate ease of use in such tests, finger-stick whole blood (WB) would constitute an ideal sample type if test performance equivalent to laboratory testing could be ensured. To determine the diagnostic sensitivity of a VL assay based on small volumes of WB, we analyzed 1,094 sample pairs of 1 ml of plasma and 10 μl of WB from donors confirmed to be HIV positive. The probability of detecting HIV nucleic acids in 10 μl of blood was 59.3% (95% confidence interval, 54.9 to 63.6%), 85.1% (80.0 to 90.2%), 91.5% (88.1 to 95%), and 100% when the corresponding plasma samples had an undetectable VL, a detectable VL less than 40 viral copies/ml (cp/ml), a VL between 40 and 4,000 cp/ml, and a VL greater than 4,000 cp/ml, respectively. Capillary blood and venous blood yielded comparable diagnostic sensitivities. Furthermore, our data indicate that WB could be used to monitor VL changes after highly active antiretroviral therapy (HAART) started. Thus, we have demonstrated the feasibility of small volumes of venous and finger-stick WB as valid samples for VL testing. This approach should facilitate the development of robust point-of-care HIV VL tests.
Theoretical Analysis of Long-Range Dielectric-Loaded Surface Plasmon Polariton Waveguides

A structure for guiding surface plasmon polaritons (SPPs) over millimeter distances with tight mode confinement is presented and analyzed in detail using the finite element method. The proposed long-range plasmonic waveguide consists of a dielectric ridge deposited on a narrow metal stripe supported by a dielectric buffer layer covering a low-index substrate. It is shown that such an asymmetric waveguide structure can be designed to support a long-range symmetric SPP mode, featuring a propagation length of ≈ 3.1 mm and lateral mode width of ≈ 1.6&nbsp;μ m at telecom wavelengths of ~ 1.55 μm. Our analysis covers a broad spectrum of parameters: ridge dimensions, buffer layer parameters (refractive index and thickness), as well as metal stripe width, considering in detail the underlying mechanisms of SPP waveguiding in this configuration. The suggested configuration offers easy connection to electrodes enabling, e.g., thermo-optic or electro-optic control, and is technologically simple, making fabrication possible using only a few lithography steps. Additionally, a new figure of merit is introduced, which is related to a number of plasmonic components allowed for a given mode confinement and propagation loss, aiming thereby at the evaluation of the application potential of plasmonic waveguides.
Growth-rate-dependent partitioning of RNA polymerases in bacteria

Physiological changes that result in changes in bacterial gene expression are often accompanied by changes in the growth rate for fast adapting enteric bacteria. Because the availability of RNA polymerase (RNAP) in cells depends on the growth rate, transcriptional control involves not only the regulation of promoters, but also depends on the available (or free) RNAP concentration, which is difficult to quantify directly. Here, we develop a simple physical model describing the partitioning of cellular RNAP into different classes: RNAPs transcribing mRNA and ribosomal RNA (rRNA), RNAPs nonspecifically bound to DNA, free RNAP, and immature RNAP. Available experimental data for Escherichia coli allow us to determine the 2 unknown parameters of the model and hence deduce the free RNAP concentration at different growth rates. The results allow us to predict the growth-rate dependence of the activities of constitutive (unregulated) promoters, and to disentangle the growth-rate-dependent regulation of promoters (e.g., the promoters of rRNA operons) from changes in transcription due to changes in the free RNAP concentration at different growth rates. Our model can quantitatively account for the observed changes in gene expression patterns in mutant E. coli strains with altered levels of RNAP expression without invoking additional parameters. Applying our model to the case of the stringent response after amino acid starvation, we can evaluate the plausibility of various scenarios of passive transcriptional control proposed to account for the observed changes in the expression of rRNA and biosynthetic operons.
Heat pain detection threshold is associated with the area of secondary hyperalgesia following brief thermal sensitization: a study of healthy male volunteers

Introduction The area of secondary hyperalgesia following brief thermal sensitization (BTS) of the skin and heat pain detection thresholds (HPDT) may both have predictive abilities in regards to pain sensitivity and clinical pain states. The association between HPDT and secondary hyperalgesia, however, remains unsettled, and the dissimilarities in physiologic properties suggest that they may represent 2 distinctively different pain entities. The aim of this study was to investigate the association between HPDT and BTS-induced secondary hyperalgesia. Methods A sample of 121 healthy male participants was included and tested on 2 separate study days with BTS (45°C, 3 minutes), HPDT, and pain during thermal stimulation (45°C, 1 minute). Areas of secondary hyperalgesia were quantified after monofilament pinprick stimulation. The pain catastrophizing scale (PCS) and hospital anxiety and depression scale (HADS) were also applied. Results A significant association between HPDT and the size of the area of secondary hyperalgesia (p<0.0001) was found. The expected change in area of secondary hyperalgesia due to a 1-degree increase in HPDT was estimated to be −27.38 cm2, 95% confidence interval (CI) of −37.77 to −16.98 cm2, with an R2 of 0.19. Likewise, a significant association between HADS-depression subscore and area of secondary hyperalgesia (p=0.046) was found, with an estimated expected change in secondary hyperalgesia to a 1-point increase in HADS-depression subscore of 11 cm2, 95% CI (0.19–21.82), and with R2 of 0.03. We found no significant associations between secondary hyperalgesia area and PCS score or pain during thermal stimulation. Conclusion HPDT and the area of secondary hyperalgesia after BTS are significantly associated; however, with an R2 of only 19%, HPDT only offers a modest explanation of the inter-participant variation in the size of the secondary hyperalgesia area elicited by BTS.
Combinatorial problem solving using randomized dynamic tunneling on a production system

Levy and Montalvo (1985), Yao (1989), and Shima (1993) individually proposed tunneling algorithms. The tunneling algorithms employ analogy to the tunnel effect in physics, and are used to optimize continuous systems. The present paper proposes a method of solving combinatorial problems using a type of randomized dynamic tunneling technique. This method is based on a computational model called CCM*. CCM* is an extended version of the Chemical Casting Model (CCM). CCM was proposed by the author toward developing a method of solving open and incompletely-specified problems that may change while being solved, using self-organizing computation. The 0-1 integer programming problem is solved using CCM* with a very simple rule and an evaluation function. CCM* allows one to escape from local maxima by composing the rule dynamically and randomly. This cannot be done by using the original production rule. The author's experiments show that approximate solutions can be found more rapidly by CCM* than by using a branch-and-bound method in the case of 0-1 integer programming.
Cardiovascular Effects of Nasal and Transdermal Nicotine and Cigarette Smoking

The purpose of this study was to compare circadian blood pressure and heart rate patterns and other cardiovascular effects of nicotine delivered rapidly (via nasal spray, NNS), slowly (transdermal nicotine, TDN), by cigarette smoking (rapid delivery of nicotine plus other smoke toxins), and placebo NNS. Twelve healthy cigarette smokers were studied on a research ward when they smoked cigarettes (16 per day) or used TDN (15 mg/16 h), NNS (24 1-mg doses per day), or placebo NNS, each for 5 days. There were no significant differences in systolic blood pressure, but diastolic blood pressure was slightly increased during cigarette smoking. Plasma epinephrine, &bgr;-thromboglobulin, and fibrinogen levels were higher during cigarette smoking than with TDN. For most measurements, NNS values were intermediate between and not significantly different from those of cigarette smoking and TDN. We conclude that, at recommended doses, TDN and NNS have fewer effects on biomarkers of cardiovascular risk than does cigarette smoking.
Stars and bunches in planar graphs. Part I: Triangulations

Given a plane graph, a $k$-star at $u$ is a set of $k$ vertices with a common neighbour $u$; and a bunch is a maximal collection of paths of length at most two in the graph, such that all paths have the same end vertices and the edges of the paths form consecutive edges (\,in the natural order in the plane graph\,) around the two end vertices. We prove a theorem on the structure of plane triangulations in terms of stars and bunches. The result states that a plane triangulation contains a $(d-1)$-star centred at a vertex of degree $d\leq5$ and the sum of the degrees of the vertices in the star is bounded, or there exists a large bunch.
Chemoradiotherapy for Synchronous Multiple Primary Cancers with Esophageal Squamous Cell Carcinoma: a Case-control Study

Objective: To evaluate the efficacy and toxicity of concurrent chemoradiotherapy (CRT) in multiple primary cancers (MPC) of the upper digestive tract in esophageal squamous cell carcinoma (ESCC). Methods: In a screening of 1193 consecutive patients diagnosed with ESCC and received radiotherapy, 53 patients presenting synchronous MPC in the upper digestive tract were retrospectively investigated. 53 consecutive patients with esophageal non-multiple primary cancer (NPC), matched by stage, age and sex, served as control. All of the patients received concurrent CRT. The median radiation dose was 60 Gy. Chemotherapy regimens were based on platinum and/or 5-fluorouracil. Clinical outcomes and treatment toxicities were compared. Results: Clinic-pathologic characteristics were well balanced between groups. MPC mostly located in esophagus (43, 81.8%), followed by hypopharynx (8, 15.1%) and stomach (2, 3.8%). In MPC and NPC patients, 94.3% and 96.2% completed the intended treatment. The immediate response rate was 73.6% vs 75.5%, with complete response rate of 11.3% vs 24.5% and partial response rate of 62.3% vs 51.0%. Two-year overall survival (OS), progression-free survival (PFS), locoregional progression-free survival (LRPFS) and distant progression-free survival (DPFS) were 52.2% vs 68.9% (p=0.026), 32.9% vs 54.0% (p=0.032), 60.8% vs 87.8% (p=0.002) and 64.0% vs 70.8% (p=0.22), respectively. Acute grade 3-4 toxicities were observed in 64.2% vs 54.7%, significantly higher in radiation esophagitis (49.1% vs 28.3%, p<0.001), and mucositis (11.3% vs 00p=0.027). Conclusions: Compared with matched NPC, ESCC accompanied with synchronous MPC was related to significantly impaired survival, elevated risk of locoregional disease progression and higher incidence of severe esophagitis and mucositis, following concurrent chemoradiotherapy. Future study on reasons for decreased efficacy of chemoradiotherapy will help to optimize treatment. Advanced radiation techniques may play a role in protecting normal tissues and reduce acute toxicities.
2D modeling of MESFET under illumination

A two dimensional numerical model of GaAs MESFET with non uniform doping is developed. Photovoltaic effects in active channel are considered to estimate various characteristics under various illumination conditions. The Poisson's equations in the gate depletion region and the space charge region of the channel-substrate junction are solved numerically under various illumination conditions. The photo induced voltage at the schottky contact (Vop) is calculated for estimating the channel profile and the drain current characteristics. It has been seen that the depletion widths are strongly influenced by illumination and hence characteristics changes with illumination.
Quercetin‐3‐rhamnoglucoside (rutin) stimulates transport of organic anion compounds mediated by organic anion transporting polypeptide 2B1

Quercetin‐3‐rhamnoglucoside (rutin) has a wide spectrum of biochemical and pharmacological activities. Rutin is absorbed mainly in its unmetabolized form. Organic anion transporting polypeptide (OATP) 2B1 is a major uptake transporter in the intestine. Thus, it is important for the prevention of adverse events to understand drug interactions mediated by OATP2B1 in the absorption process. This study assessed the effect of rutin on transport by OATP2B1. Rutin stimulated the uptake of estrone‐3‐sulfate (E‐3‐S), taurocholic acid (TCA), cholic acid (CA) and rosuvastatin by OATP2B1, but not p‐coumaric acid or ferulic acid. The EC50 of rutin for transport by OATP2B1 was 2.32 μm. The Km value of E‐3‐S for OATP2B1 in the presence of rutin (9.21 μm) was almost the same as that in the absence of rutin (8.53 μm). On the other hand, the Vmax of E‐3‐S transport by OATP2B1 in the presence of rutin (270 pmol/mg protein/min) was 1.2‐fold higher than that in the absence of rutin (218 pmol/mg protein/min). Moreover, the expression level of OATP2B1 on the cell membrane was increased by treatment with rutin for 5 min without alteration of the total OATP2B1 expression level. Moreover, the increase in the localization of OATP2B1 at the cell surface was detected by the immunocytochemistry. The stimulatory effect of rutin is a little weak but may affect the absorption of OATP2B1 substrates, because rutin is taken daily in foods and its intestinal concentration would reach the stimulatory range of OATP2B1. Copyright © 2014 John Wiley & Sons, Ltd.
Kinectrack: 3D Pose Estimation Using a Projected Dense Dot Pattern

Kinectrack is a novel approach to six-DoF tracking that provides agile real-time pose estimation using only commodity hardware. The dot pattern emitter and IR camera components of the standard Kinect device are separated to allow the emitter to roam freely relative to a fixed camera. The six-DoF pose of the emitter component is recovered by matching the dense dot pattern observed by the camera to a pre-captured reference image. A novel matching technique is introduced to obtain the dense dot pattern correspondences efficiently in wide- and adaptive-baseline scenarios that requires only a small subset of the full dense dot pattern to fall within the field of view of the fixed camera. An auto-calibration process is proposed in order to obtain the intrinsic parameters of the fixed camera and the internal dot pattern reference image of the emitter. The system simultaneously recovers the six-DoF pose of the emitter device and the piecewise planar 3D scene structure. Kinectrack provides a low-cost method for tracking an object without any on-board computation, with small size and only simple electronics. This paper extends the original ISMAR 2012 submission, including a demonstration of robust pose tracking for AR and examples of matching in planar and non-planar scenes.
Impaired Prefrontal Hemodynamic Maturation in Autism and Unaffected Siblings

Background Dysfunctions of the prefrontal cortex have been previously reported in individuals with autism spectrum disorders (ASD). Previous studies reported that first-degree relatives of individuals with ASD show atypical brain activity during tasks associated with social function. However, developmental changes in prefrontal dysfunction in ASD and genetic influences on the phenomena remain unclear. In the present study, we investigated the change in hemoglobin concentration in the prefrontal cortex as measured with near-infrared spectroscopy, in children and adults with ASD during the letter fluency test. Moreover, to clarify the genetic influences on developmental changes in the prefrontal dysfunction in ASD, unaffected siblings of the ASD participants were also assessed. Methodology/Principal Findings Study participants included 27 individuals with high-functioning ASD, age- and IQ-matched 24 healthy non-affected siblings, and 27 unrelated healthy controls aged 5 to 39 years. The relative concentration of hemoglobin ([Hb]) in the prefrontal cortex was measured during the letter fluency task. For children, neither the [oxy-Hb] change during the task nor task performances differed significantly among three groups. For adults, the [oxy-Hb] increases during the task were significantly smaller in the bilateral prefrontal cortex in ASD than those in control subjects, although task performances were similar. In the adult siblings the [oxy-Hb] change was intermediate between those in controls and ASDs. Conclusion/Significance Although indirectly due to a cross-sectional design, the results of this study indicate altered age-related change of prefrontal activity during executive processing in ASD. This is a first near-infrared spectroscopy study that implies alteration in the age-related changes of prefrontal activity in ASD and genetic influences on the phenomena.
Long-Term Outcomes of Reverse Total Shoulder Arthroplasty: A Follow-up of a Previous Study

Background: Despite the increasing numbers of reverse total shoulder arthroplasty (RTSA) procedures, the long-term results have been rarely reported. We previously reported early outcomes of a cohort of patients treated with a Grammont-style RTSA. The purpose of this study was to evaluate the outcomes after a minimum of 10 years, and to document prosthetic survival and complications. Methods: Clinical outcome assessment was based on the absolute and relative Constant scores and the active range of motion. Radiographic evaluations of scapular notching, tuberosity osteolysis, and periprosthetic radiolucent lines were done as well. Complications and revisions were compiled, and a Kaplan-Meier survival analysis was performed. Results: The original report included the outcomes for 186 patients (191 RTSAs) who had been followed for a mean of 40 months. In the present study, in which the mean duration of follow-up was 150 months, follow-up clinical evaluations were available for 84 patients (87 prostheses) and radiographic assessments were available for 64 patients (67 prostheses). Seventy-seven patients (79 prostheses) had died before the 10-year follow-up, and 17 patients (17 prostheses) had been lost to follow-up. The mean absolute and relative Constant scores (and standard deviations) were 55 ± 16 points and 86 ± 26 points, respectively, with both having decreased significantly compared with the scores at the medium-term follow-up evaluation (at a minimum of 2 years) (p < 0.001 and p = 0.025, respectively). Forty-nine shoulders (73%) exhibited scapular notching. Forty-seven complications (29%) were recorded, with 10 cases (10%) occurring after 2 years. Sixteen (12%) of the original patients underwent revision surgery. The 10-year overall prosthetic survival rate using revision as the end point was 93%. Conclusions: Despite a high arthroplasty survival rate and good long-term clinical results, RTSA outcomes showed deterioration when compared with medium-term results. The cause of this decrease is probably related to patient aging coupled with bone erosion and/or deltoid impairment over time. Level of Evidence: Therapeutic Level IV. See Instructions for Authors for a complete description of levels of evidence.
In : Models of Information Processing in the Basal Ganglia

One of the most active areas of research in artificial intelligence is the study of learning methods by which “embedded agents” can improve performance while acting in complex dynamic environments. An agent, or decision maker, is embedded in an environment when it receives information from, and acts on, that environment in an ongoing closed-loop interaction. An embedded agent has to make decisions under time pressure and uncertainty and has to learn without the help of an ever-present knowledgeable teacher. Although the novelty of this emphasis may be inconspicuous to a biologist, animals being the prototypical embedded agents, this emphasis is a significant departure from the more traditional focus in artificial intelligence on reasoning within circumscribed domains removed from the flow of real-world events. One consequence of the embedded agent view is the increasing interest in the learning paradigm called reinforcement learning (RL). Unlike the more widely studied supervised learning systems, which learn from a set of examples of correct input/output behavior, RL systems adjust their behavior with the goal of maximizing the frequency and/or magnitude of the reinforcing events they encounter over time.