Miracle-dz/UniFAR-FTUs huggingface dataset:
Effect of early feed restriction on growth, feed conversion, and mortality in broiler chickens.

Two floor pen and two battery experiments were conducted to determine the effects of early feed restriction on the performance of commercial broilers. Feed restriction was induced in all experiments by providing chicks with 40 kcal of ME per bird per day, commencing at 4 days of age. Male chicks were feed-restricted for 7 (Experiments 1 and 2) or 6 days (Experiments 3 and 4), whereas broiler females were restricted for 5 days (Experiment 1). Ad libitum feeding was resumed after the restriction periods, and continued through the conclusion of the experiments at 49 (Experiments 1 and 2) or 28 (Experiments 3 and 4) days of age. Broilers provided ad libitum access to feed for the entire experimental period served as the controls in each study. Broilers subjected to an early feed restriction had significantly (p less than or equal to .05) lower mean body weights than controls for all ages measured in the four experiments. However, feed conversion ratios for restricted broilers were significantly lower at 28 (Experiments 1 through 4) and 49 (Experiments 1 and 2) days of age than for birds consuming feed ad libitum. Through regression analyses, it was estimated that male broilers in Experiments 1 and 2 would require approximately 2 additional days to obtain body weights similar to those observed in control broilers and would still maintain a lower feed conversion ratio at this older age. In Experiments 1 and 2, weekly body weight gains for restricted broilers were significantly lower than for controls from 0 through 28 days of age. However, restricted broilers (7 days) in Experiment 2 had significantly higher rates of gain from 29 to 49 days of age than unrestricted controls. Total pen body weights for restricted and ad libitum groups were similar at 49 days of age in Experiments 1 and 2, which reflected the significant difference in mortality observed between the two groups.
Role of environmental factors and microorganisms in determining the fate of polycyclic aromatic hydrocarbons in the marine environment

Polycyclic aromatic hydrocarbons (PAHs) are widespread in marine ecosystems and originate from natural sources and anthropogenic activities. PAHs enter the marine environment in two main ways, corresponding to chronic pollution or acute pollution by oil spills. The global PAH fluxes in marine environments are controlled by the microbial degradation and the biological pump, which plays a role in particle settling and in sequestration through bioaccumulation. Due to their low water solubility and hydrophobic nature, PAHs tightly adhere to sediments leading to accumulation in coastal and deep sediments. Microbial assemblages play an important role in determining the fate of PAHs in water and sediments, supporting the functioning of biogeochemical cycles and the microbial loop. This review summarises the knowledge recently acquired in terms of both chronic and acute PAH pollution. The importance of the microbial ecology in PAH-polluted marine ecosystems is highlighted as well as the importance of gaining further in-depth knowledge of the environmental services provided by microorganisms.
Impact of reactive oxygen species on antioxidant capacity of male reproductive system

The present research work was aimed to study the mutual interaction of reactive oxygen species (ROS) and basal cells antioxidant capacity in the male reproductive system and to further establish the association between selected heavy metals and stress markers. Total oxidant status (TOS) and total antioxidant status (TAS) of serum and seminal plasma were determined by automated photometric methods. The concentrations of Selenium (Se), Lead (Pb), and Cadmium (Cd) were determined by using atomic absorption spectrophotometer. The TOS was increased significantly (P <0.05) in seminal plasma as well as in the serum of the infertile group when compared with the fertile group. On the other hand, the TAS of the infertile group was found to be noticeably decreased (P <0.05) when compared with the TAS of the fertile group. Among the heavy metals, a noticeably lower concentration of Se was detected in the infertile group whereas markedly elevated levels of Cd and Pb were observed in the infertile group compared with the fertile group. Among the infertile group a significant inverse correlation (r = −0.521, P <0.05) was observed between Se and TOS and between Cd and Pb (r = −0.407, P <0.05). Contrarily among the infertile group a considerable positive relationship was established between Se and TAS (r = 0.507, P <0.05). It was concluded that the oxidant stress reduces the antioxidant activity in infertile men by elevating the production of ROS. A lower concentration of Se and elevated levels of Pb and Cd explain the individual’s exposure to these heavy metals. The study also revealed that the heavy metal toxicity contributes significantly to male infertility.
Association between major histocompatibility complex class IIB alleles and resistance to Aeromonas salmonicida in Atlantic salmon

We have tested the importance of genetic variation in the major histocompatibility complex (MHC) class IIB in Atlantic salmon (Salmo salar) for survival after challenge with a highly virulent bacterial pathogen. Forty juvenile full siblings from each of 120 families were infected with the bacterium Aeromonas salmonicida, which causes high mortality in salmon due to furunculosis. Fishes from high–resistance (HR, < 35% mortality) and low–resistance (LR, > 80% mortality) families were screened for their MHC class IIB genotypes using the denaturing gradient gel electrophoresis (DGGE) technique. The exon 2 sequences, encoding the major part of the peptide–binding region, were established for each DGGE fragment. One allele, e, containing a missense single base substitution was significantly more prevalent in HR families than in LR families. An odds–ratio test showed that broods carrying this allele had a 12–fold higher chance of being HR than broods without the e allele. A second allele, i, showed significantly higher frequencies in uninfected and surviving individuals than in infected dead individuals. A third allele, j, tended to be more prevalent both in LR families and in individuals that had died of the infection. There was no correlation between MHC heterozygosity and resistance to A. salmonicida. Our results support the hypothesis that MHC polymorphism is maintained through pathogen–driven selection acting by means of frequency–dependent selection rather than heterozygous advantage.
Increasing Rates of Surgery for Patients With Nonmalignant Colorectal Polyps in the United States.

BACKGROUND & AIMS Despite the availability of endoscopic therapy, many patients in the United States undergo surgical resection for nonmalignant colorectal polyps. We aimed to quantify and examine trends in the use of surgery for nonmalignant colorectal polyps in a nationally representative sample. METHODS We analyzed data from the Healthcare Cost and Utilization Project National Inpatient Sample for 2000 through 2014. We included all adult patients who underwent elective colectomy or proctectomy and had a diagnosis of either nonmalignant colorectal polyp or colorectal cancer. We compared trends in surgery for nonmalignant colorectal polyps with surgery for colorectal cancer and calculated age, sex, race, region, and teaching status/bed-size-specific incidence rates of surgery for nonmalignant colorectal polyps. RESULTS From 2000 through 2014, there were 1,230,458 surgeries for nonmalignant colorectal polyps and colorectal cancer in the United States. Among those surgeries, 25% were performed for nonmalignant colorectal polyps. The incidence of surgery for nonmalignant colorectal polyps has increased significantly, from 5.9 in 2000 to 9.4 in 2014 per 100,000 adults (incidence rate difference, 3.56; 95% confidence interval 3.40-3.72), while the incidence of surgery for colorectal cancer has significantly decreased, from 31.5 to 24.7 surgeries per 100,000 adults (incidence rate difference, -6.80; 95% confidence interval -7.11 to -6.49). The incidence of surgery for nonmalignant colorectal polyps has been increasing among individuals age 20 to 79, in men and women and including all races and ethnicities. CONCLUSIONS In an analysis of a large, nationally representative sample, we found that surgery for nonmalignant colorectal polyps is common and has significantly increased over the past 14 years.
An Integrative Approach to Computational Modelling of the Gene Regulatory Network Controlling Clostridium botulinum Type A1 Toxin Production

Clostridium botulinum produces botulinum neurotoxins (BoNTs), highly potent substances responsible for botulism. Currently, mathematical models of C. botulinum growth and toxigenesis are largely aimed at risk assessment and do not include explicit genetic information beyond group level but integrate many component processes, such as signalling, membrane permeability and metabolic activity. In this paper we present a scheme for modelling neurotoxin production in C. botulinum Group I type A1, based on the integration of diverse information coming from experimental results available in the literature. Experiments show that production of BoNTs depends on the growth-phase and is under the control of positive and negative regulatory elements at the intracellular level. Toxins are released as large protein complexes and are associated with non-toxic components. Here, we systematically review and integrate those regulatory elements previously described in the literature for C. botulinum Group I type A1 into a population dynamics model, to build the very first computational model of toxin production at the molecular level. We conduct a validation of our model against several items of published experimental data for different wild type and mutant strains of C. botulinum Group I type A1. The result of this process underscores the potential of mathematical modelling at the cellular level, as a means of creating opportunities in developing new strategies that could be used to prevent botulism; and potentially contribute to improved methods for the production of toxin that is used for therapeutics.
Allosterism within δ Opioid–κ Opioid Receptor Heteromers in Peripheral Sensory Neurons: Regulation of κ Opioid Agonist Efficacy

There is abundant evidence for formation of G protein-coupled receptor heteromers in heterologous expression systems, but little is known of the function of heteromers in native systems. Heteromers of δ and κ opioid receptors (DOR-KOR heteromers) have been identified in native systems. We previously reported that activation of DOR-KOR heteromers expressed by rat pain-sensing neurons (nociceptors) produces robust, peripherally mediated antinociception. Moreover, DOR agonist potency and efficacy is regulated by KOR antagonists via allosteric interactions within the DOR-KOR heteromer in a ligand-dependent manner. Here we assessed the reciprocal regulation of KOR agonist function by DOR antagonists in adult rat nociceptors in culture and in a behavioral assay of nociception. Naltrindole enhanced the potency of the KOR agonist 2-(3,4-dichlorophenyl)-N-methyl-N-[(1S)-1-phenyl-2-pyrrolidin-1-ylethyl]acetamide (ICI-199441) 10- to 20-fold, but did not alter responses to 2-(3,4-dichlorophenyl)-N-methyl-N-[(1R,2R)-2-pyrrolidin-1-ylcyclohexyl]acetamide (U50488). By contrast, the potency of U50488 was enhanced 20-fold by 7-benzylidenenaltrexone. The efficacy of 6ʹ-guanidinonaltrindole (6ʹ-GNTI) to inhibit nociceptors was blocked by small interfering RNA knockdown of DOR or KOR. Replacing 6ʹ-GNTI occupancy of DOR with either naltrindole or 7-benzylidenenaltrexone abolished 6ʹ-GNTI efficacy. Further, peptides derived from DOR transmembrane segment 1 fused to the cell membrane–penetrating HIV transactivator of transcription peptide also blocked 6ʹ-GNTI–mediated responses ex vivo and in vivo, suggesting that 6ʹ-GNTI efficacy in nociceptors is due to its positive allosteric regulation of KOR via occupancy of DOR in a DOR-KOR heteromer. Together, these results provide evidence for the existence of functional DOR-KOR heteromers in rat peripheral sensory neurons and that reciprocal, ligand-dependent allosteric interactions occur between the DOR and KOR protomers.
Changes in phase stability on Ti-10 aT.%Mo alloy by alloying elements

The objective of this study is to investigate the effect of alloying elements on phase stability in Ti-10at. %Mo alloy. Theoretical calculations such as Bo-Md calculation and Calphad using JMatPro software have been applied to predict phase stability of Ti-10at. %Mo alloy owing to third alloying elements at elevated and ambient temperatures. In this study, powder metallurgy, sintering, and solution treatment are applied for fabrication of sample. It is found that α’ or α” phases slightly exist within β matrix in the Ti-10at. %Mo alloy after sintering at 1573K for 14.4ks and solution treatment at 1373K for 3.6ks . It is also found that addition of alloying elements such as Fe, Cr and Sn can stabilise the β phase in ambient temperature after fabrication by the same process. XRDpeaks of the α’ or α” phases are decreased owing to the addition of those alloying elements for 5at%. Moreover, the addition of 10at% of Fe, Cr and Sn could retard formation of α’ or α” phases. However, the alloying elements have significant difference on stabilisation of the β phase. The addition of 10at% Cr can promote full β phase. On the other hand, addition of Sn and Fe still reveal α’ or α” phase. Thus, it is thought that the addition of the alloying elements is effective for stabilise the β phase in ambient temperature and the addition of 10at% Cr is the minimal requirement to obtain full β phase in Ti10at. %Mo alloy. Keyword: Phase stability, Ti-10at. %Mo alloys, Alloying elements, Powder metallurgy, α’ or α” phases, β phase.
A Classifier-based approach to identify genetic similarities between diseases

Motivation: Genome-wide association studies are commonly used to identify possible associations between genetic variations and diseases. These studies mainly focus on identifying individual single nucleotide polymorphisms (SNPs) potentially linked with one disease of interest. In this work, we introduce a novel methodology that identifies similarities between diseases using information from a large number of SNPs. We separate the diseases for which we have individual genotype data into one reference disease and several query diseases. We train a classifier that distinguishes between individuals that have the reference disease and a set of control individuals. This classifier is then used to classify the individuals that have the query diseases. We can then rank query diseases according to the average classification of the individuals in each disease set, and identify which of the query diseases are more similar to the reference disease. We repeat these classification and comparison steps so that each disease is used once as reference disease. Results: We apply this approach using a decision tree classifier to the genotype data of seven common diseases and two shared control sets provided by the Wellcome Trust Case Control Consortium. We show that this approach identifies the known genetic similarity between type 1 diabetes and rheumatoid arthritis, and identifies a new putative similarity between bipolar disease and hypertension. Contact: serafim@cs.stanford. edu
COBI (COntinuous hyperosmolar therapy for traumatic Brain-Injured patients) trial protocol: a multicentre randomised open-label trial with blinded adjudication of primary outcome

Introduction Traumatic brain injury (TBI) is a major cause of death and severe prolonged disability. Intracranial hypertension (ICH) is a critical risk factor of bad outcomes after TBI. Continuous infusion of hyperosmolar therapy has been proposed for the prevention and the treatment of ICH. Whether an early administration of continuous hyperosmolar therapy improves long-term outcomes of patients with TBI is uncertain. The aim of the COBI study (number clinicaltrial.gov 03143751, pre-results stage) is to assess the efficiency and the safety of continuous hyperosmolar therapy in patients with TBI. Methods and analysis The COBI (COntinuous hyperosmolar therapy in traumatic Brain-Injured patients) trial is a multicentre, randomised, controlled, open-label, two-arms study with blinded adjudication of primary outcome. Three hundred and seventy patients hospitalised in intensive care unit with a TBI (Glasgow Coma Scale ≤12 and abnormal brain CT scan) are randomised in the first 24 hours following trauma to standard care or continuous hyperosmolar therapy (20% NaCl) plus standard care. Continuous hyperosmolar therapy is maintained for at least 48 hours in the treatment group and continued for as long as is necessary to prevent ICH. The primary outcome is the score on the Extended Glasgow Outcome Scale at 6 months. The treatment effect is estimated with ordinal logistic regression adjusted for prespecified prognostic factors and expressed as a common OR. Ethics and dissemination The COBI trial protocol has been approved by the ethics committee of Paris Ile de France VIII and will be carried out according to the principles of the Declaration of Helsinki and the Good Clinical Practice guidelines. The results of this study will be disseminated through presentation at scientific conferences and publication in peer-reviewed journals. The COBI trial is the first randomised controlled trial powered to investigate whether continuous hyperosmolar therapy in patients with TBI improve long-term recovery. Trial registration number Trial registration number is NCT03143751.
Antibiotic resistance: a survey of physician perceptions.

BACKGROUND Antibiotic resistance is caused partly by excessive antibiotic prescribing, yet little is known about prescribers' views on this problem. METHODS We surveyed 490 internal medicine physicians at 4 Chicago-area hospitals to assess their attitudes about the importance of antibiotic resistance, knowledge of its prevalence, self-reported experience with antibiotic resistance, beliefs about its causes, and attitudes about interventions designed to address the problem. RESULTS The response rate was 87% (424 of 490 physicians). Antibiotic resistance was perceived as a very important national problem by 87% of the respondents, but only 55% rated the problem as very important at their own hospitals. Nearly all physicians (97%) believed that widespread and inappropriate antibiotic use were important causes of resistance. Yet, only 60% favored restricting use of broad-spectrum antibiotics, although this percentage varied by hospital and physician group. CONCLUSIONS Although most physicians view antibiotic resistance as a serious national problem, perceptions about its local importance, its causes, and possible solutions vary more widely. Disparities in physician knowledge, beliefs, and attitudes may compromise efforts to improve antibiotic prescribing and infection control practices.
Broiler production under varying population densities.

The influence of population density on the growth performance and stress level of Hubbard x Hubbard chicks of equally mixed sex was studied. Six hundred and sixteen birds were housed under . 05, . 07, . 09, or . 11 m2 per bird (four replicates per density) from 0 to 7 wk. There were no treatment effects on feed conversion at 6 or 7 wk. Birds housed at . 07, . 09, and . 11 m2 per bird had similar 7-wk BW and carcass weights, all significantly higher than birds housed at . 05 m2 per bird. Under . 05 m2 per bird, a higher percentage of breast blisters and ammonia burns (30%) was observed than at other densities. The 7-wk heterophil to lymphocyte ratios of birds raised at . 09 and . 11 m2 per bird (.42 and .45) were significantly higher than those at . 05 and . 07 m2 per bird (.28 and .30). Lowered BW and decreased carcass quality of birds raised at . 05 m2 per bird suggested that these birds were stressed. However, decision analysis of economic potential indicated that the optimum profit potential per square meter was . 05 m2 per bird for Maximax and Equally Likely decisions and . 07 m2 per bird for the Maximin decision.
Volatile Anesthetics and Immunity

ABSTRACT Historically, volatile anesthetics have demonstrated interesting interactions with both the innate and adaptive immune systems. This review organizes these interactions into four phases: recognition, recruitment, response, and resolution. These phases represent a range of proinflammatory, inflammatory, and innate and adaptive immune regulatory responses. The interaction between volatile anesthetics and the immune system is discussed in the context of pathogenesis of infectious disease.
Evaluation of tolerance to ambulatory blood pressure monitoring

Abstract Ambulatory blood pressure monitoring (ABPM) is a helpful tool to comprehensively identify and diagnose arterial hypertension. Moreover, it allows to better identify alterations in the circadian BP profile, as the nocturnal “nondipping” status, characterized by a lack of the physiological 10% night BP reduction and associated with a greater risk of target organ damage. However, ABPM has some limitations such as restricted availability, discomfort, particularly at night, cost implications, and reproducibility. Aim of the study was evaluate if the “nondipping” phenomenon may be related to low degree of tolerance to ABPM. Additionally, to determine whether self-reported events of sleep disorders and nighttime urinations may affect the “nondipping” status. From January 2013 to December 2015, we consecutively evaluated 1046 patients with arterial hypertension, performing ABPM, considering a tolerance index calculated on the basis of the patients’ responses to a questionnaire. Thirty-eight out of 1046 patients showed complete lack of tolerance to the instrument during the day, whilst 126 during the night. There were no statistically significant differences in daytime and nighttime values of tolerance to the instrument between “dippers” and “nondippers,” between “extreme-dippers” and the remaining patients or between “reverse-dippers” and the remaining patients. There were no statistically significant differences in the number of nocturnal awakenings between the groups. However, we found that the number of awakenings followed by urination was higher in “nondipping” patients and in “reverse-dipping” patients compared to the other groups. We found that the poor tolerance to the instrument does not seem to influence the BP “dipping” phenomenon among hypertensive individuals. Moreover, we think that in the evaluation of the ABPM data, factors, such as nocturnal urination and sleep disorders, need to be carefully taken into account, since may lead to a higher incidence of “nondipping” pattern.