Miracle-dz/UniFAR-FTUs huggingface dataset:
Social and population structure of a gleaning bat, Plecotus auritus

Brown long-eared bats Plecotus auritus occupying 30 summer roosts in north-east Scotland were studied over 15 years. During this time 1365 bats were ringed, and a further 720 recaptures were made. Individual bats showed a high degree of roost fidelity, returning to one main roost site; < 1% of recaptured bats had moved among roost sites, and all recorded movements (n = 5) were < 300 m. Adults of both sexes were loyal to the roost sites at which they were first captured, indicating long-term use of roosts. At least some juveniles (n = 32) of both sexes returned to the natal roost. Mark‐recapture estimates indicated that colonies of this species were substantially larger (c. 30‐50 individuals) than assumed in previous studies. Plecotus auritus differs from most other temperate zone, vespertilionid species in that there was no evidence of sexual segregation during summer, with males present in all colonies throughout the period of occupancy. Population structure in summer seems to be consistent with a metapopulation model, with discrete sub-populations showing minimal interchange. The group size, colony composition and population structure described in this species may be associated with the wing shape (particularly aspect ratio) and foraging behaviour of P. auritus. It is postulated that relative motility, linked to wing structure, may affect the distribution of individuals, and may have implications for the genetic structure of this species. Correlations between aspect ratio and both colony size and migratory behaviour, across British bat species, indicate that wing shape could be an important factor contributing to patterns of social behaviour and genetic structuring in bats.
Sensory attenuation of self‐produced signals does not rely on self‐specific motor predictions

Sensory events produced by ourselves are known to lead to lower neural and perceptual impact than sensory events from other environmental sources. This sensory attenuation is widely assumed to result from control processes that are specific to our own motor actions, potentially helping us to distinguish effects produced by ourselves and others. However, previous research cannot rule out that the putative self‐attenuation in fact reflect actor‐independent, general predictive mechanisms, which, in direct comparison, just highlight external events due to lower predictability of their onset and thus higher surprise. By measuring the auditory‐evoked N1 component, we show that self‐generation of sounds only lead to cortical attenuation when the onset of other‐generated sounds is less predictable due to the absence of any predictive cues. The presence of a cue predicting the onset of auditory stimuli, in contrast, led to a reversal of the attenuation effect, with lower N1 amplitudes for other‐generated sounds in contrast to self‐generated sounds. Thus, contrary to prevalent assumptions sensory attenuation is not bound to self‐generation per se. Rather, it appears to be the result of general mechanisms that does not reliably and selectively attenuate self‐induced stimulation but is determined by a flexible processing of sensory input based on its predictability, contextual relevance and attentional salience.
Do Visual and Vestibular Inputs Compensate for Somatosensory Loss in the Perception of Spatial Orientation? Insights from a Deafferented Patient

The present study aimed at investigating the consequences of a massive loss of somatosensory inputs on the perception of spatial orientation. The occurrence of possible compensatory processes for external (i.e., object) orientation perception and self-orientation perception was examined by manipulating visual and/or vestibular cues. To that aim, we compared perceptual responses of a deafferented patient (GL) with respect to age-matched Controls in two tasks involving gravity-related judgments. In the first task, subjects had to align a visual rod with the gravitational vertical (i.e., Subjective Visual Vertical: SVV) when facing a tilted visual frame in a classic Rod-and-Frame Test. In the second task, subjects had to report whether they felt tilted when facing different visuo-postural conditions which consisted in very slow pitch tilts of the body and/or visual surroundings away from vertical. Results showed that, much more than Controls, the deafferented patient was fully dependent on spatial cues issued from the visual frame when judging the SVV. On the other hand, the deafferented patient did not rely at all on visual cues for self-tilt detection. Moreover, the patient never reported any sensation of tilt up to 18° contrary to Controls, hence showing that she did not rely on vestibular (i.e., otoliths) signals for the detection of very slow body tilts either. Overall, this study demonstrates that a massive somatosensory deficit substantially impairs the perception of spatial orientation, and that the use of the remaining sensory inputs available to a deafferented patient differs regarding whether the judgment concerns external vs. self-orientation.
Comparative whole genome transcriptome analysis and fenugreek leaf extract modulation on cadmium-induced toxicity in liver cells

Cadmium (Cd), an economically valuable metal, is widely used in various industrial processes. Although it is of economic value, it is hazardous to human health. Cd accumulates in vital organs where it causes various diseases. Natural compounds with chelating or antioxidant properties have been tested to reduce the toxic effect of Cd. The anti-oxidant, anti-diabetic and hypocholesterolemic properties of fenugreek (Trigonella foenum-graecum) leaves make it a candidate for investigation as protective agent against Cd-induced toxicity. In the present study, the protective effects of fenugreek leaf extract (FLE) on cell viability, morphology, and whole genomic transcription in cadmium chloride (CdCl2)-treated rat liver cells were analyzed. The cells were treated with 25 µM CdCl2 alone, or co-treated with 5 µg/ml FLE for 48 h. The co-treated cells were pretreated with FLE for 2 or 4 h, followed by CdCl2 treatment. Genomic transcription analysis was performed in the CdCl2-treated cells following treatment for 6 h. The CdCl2 caused a significant decrease in viability (35.8±4.1%) and morphological distortion of the cells, compared with the untreated control cells; whereas 4 h pretreatment with FLE (5 µg/ml) reversed the Cd-induced morphology alteration and increased the cell viability to 102±3.8%. Genomic transcription analysis of the CdCl2 only-treated cells showed 61 upregulated and 124 downregulated genes, compared with 180 upregulated and 162 downregulated genes in the FLE pretreated cells. Furthermore, 37 and 26% of the affected total genomic genes in the CdCl2 only-treated cells were involved in binding and catalytic activities, respectively, whereas 50 and 20% of the genes in the FLE pretreated cells were involved in binding and catalytic activities, respectively. In conclusion, these results suggested that genome transcriptome modulation may be important in the protective effect of FLE against Cd-induced toxicity in normal rat liver cells.
Curation of the Pancreatic Ductal Adenocarcinoma Subset of the Cancer Genome Atlas Is Essential for Accurate Conclusions about Survival-Related Molecular Mechanisms

Purpose: Publicly available databases, for example, The Cancer Genome Atlas (TCGA), containing clinical and molecular data from many patients are useful in validating the contribution of particular genes to disease mechanisms and in forming novel hypotheses relating to clinical outcomes. Experimental Design: The impact of key drivers of cancer progression can be assessed by segregating a patient cohort by certain molecular features and constructing survival plots using the associated clinical data. However, conclusions drawn from this straightforward analysis are highly dependent on the quality and source of tissue samples, as demonstrated through the pancreatic ductal adenocarcinoma (PDAC) subset of TCGA. Results: Analyses of the PDAC-TCGA database, which contains mainly resectable cancer samples from patients in stage IIB, reveal a difference from widely known historic median and 5-year survival rates of PDAC. A similar discrepancy was observed in lung, stomach, and liver cancer subsets of TCGA. The whole transcriptome expression patterns of PDAC-TCGA revealed a cluster of samples derived from neuroendocrine tumors, which have a distinctive biology and better disease prognosis than PDAC. Furthermore, PDAC-TCGA contains numerous pseudo-normal samples, as well as those that arose from tumors not classified as PDAC. Conclusions: Inclusion of misclassified samples in the bioinformatic analyses distorts the association of molecular biomarkers with clinical outcomes, altering multiple published conclusions used to support and motivate experimental research. Hence, the stringent scrutiny of type and origin of samples included in the bioinformatic analyses by researchers, databases, and web-tool developers is of crucial importance for generating accurate conclusions. Clin Cancer Res; 24(16); 3813–9. ©2018 AACR.
Subchondroplasty for the treatment of post‐traumatic bone marrow lesions of the medial femoral condyle in a pre‐clinical canine model

This study characterizes long‐term outcomes associated with subchondroplasty (SCP) treatment for impact‐induced subchondral bone marrow lesions (BML) using a validated pre‐clinical canine model. With IACUC approval, purpose‐bred research hounds (n = 16) underwent arthroscopic impact injury (40N) to both medial femoral condyles. At 3 months, functional assessments, arthroscopy, and MRI were performed and knees (n = 32) were randomly assigned to SCP (3 ml fluoroscopically guided percutaneous injection of AccuFill BSM into BML bone defects) or sham injection (Control). Dogs were assessed at 3, 6, 12, and 24 months after treatment using functional assessments, radiographic evaluation, arthroscopy, and MRI. Dogs were humanely euthanatized at 3, 6, 12, or 24 months after treatment for gross, microCT, and histologic assessments. All knees had focal articular cartilage defects with associated subchondral BMLs, as well as clinical dysfunction, 3 months after injury. At the 3 and 6 months, SCP knees showed more functional impairment than Control knees, however, these differences were not statistically significant. At 1‐ and 2‐year post‐treatment, function in SCP knees was better than in Control knees with range of motion being significantly (p < 0.05) better for SCP. Radiographic, arthroscopic, MRI, gross, microCT, and histologic findings matched the functional assessments well with Control being associated with better results at the two early time points and SCP being associated with better results at 1 and 2 years. Clinical significance: SCP treatment using calcium phosphate bone void filler was associated with an initial increase in pain and dysfunction followed by symptomatic benefits for up to 2 years after treatment for post‐traumatic femoral condyle BMLs in a preclinical canine model. © 2018 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 36:2709–2717, 2018.
Efficacy of injecting platelet concentrate combined with hyaluronic acid for the treatment of vulvovaginal atrophy in postmenopausal women with history of breast cancer: a phase 2 pilot study

Objective: Approximately 50% to 70% of breast cancer survivors are affected by one or more symptoms of vulvovaginal atrophy (VVA). For those who cannot take hormone therapy, autologous platelet-rich plasma combined with hyaluronic acid (A-PRP-HA) may provide a new alternative therapy for the treatment of VVA in postmenopausal women with history of breast cancer. Methods: We enrolled 20 postmenopausal breast cancers survivors with VVA and a score of <15 on the Gloria Bachman Vaginal Health Index (VHI) comprised of five items including: vaginal pH, elasticity, fluid volume (secretions), epithelial integrity, and moisture. We administered intramucosal injections of A-PRP combined with HA (Regenkit) and performed clinical evaluations at 0, 1, 3, and 6 months. Primary endpoint: evaluation of vulvovaginal mucosa changes using the VHI; secondary endpoint: evaluation of dyspareunia and sexual dysfunction based on the Female Sexual Distress (FSD) score. Results: All participants (20 women) showed improvement in the clinical symptoms of vaginal dryness and dyspareunia. The VHI score showed a significant increase at 6 months, going from a total baseline score (pretreatment) of 10.7 ± 2.12 to 20.75 ± 4.8 (P < 0.0001) at 6 months. Improvement in hydration and vaginal epithelial integrity was reported. A VHI score of > 15 showed a successful treatment outcome. The FSD score decreased significantly during the study, from a baseline score of 36.35 ± 2.53 pretreatment to 30.15 ± 2.47 6 months after treatment, representing improvement of 17% (P < 0.0001, respectively). No adverse events were reported. Conclusions: The injection of A-PRP-HA appeared to be a promising method to improve the trophicity and hydration of vaginal mucosa for the treatment of VVA in postmenopausal breast cancer survivors with contraindications to hormone therapy.
A PLANT EXTRACT AMELIORATES THE DISFUNCTIONS OF ALVEOLAR MACROPHAGES IN INFLUENZA VIRUS-INFECTED MICE

Summary A polyphenol extract from Geranium sanguineum L. (PC) protected mice from mortality in the experimental influenza virus infection (EIVI). The current study aimed to reveal the effect of PC on the number and functions of alveolar macrophages (aMO) from PC-treated healthy and influenza virus-infected mice (VIM). After infection the number of the aMO in VIM was 2.0-2.5-fold increased with a maximum on day 6 p.i; the migration was depressed. PC-application induced a rise of the number and migration of aMO in the infected and healthy controls. Influenza infection impaired also the phagocytic functions of aMO; PC-treatment restored them and on day 9 p.i. phagocyte indices reached control values. Influenza infection provoked a significant increase of H2O2, · O2 - and NO production by aMO, which peaked on day 9 p.i. PC-treatment decreased the release of ROS and NO; this resulted in reduced lung tissue damage.
Occurrence, Distribution, and Risk Assessment of Antibiotics in a Subtropical River-Reservoir System

Antibiotic pollutions in the aquatic environment have attracted widespread attention due to their ubiquitous distribution and antibacterial properties. The occurrence, distribution, and ecological risk assessment of 17 common antibiotics in this study were preformed in a vital drinking water source represented as a river-reservoir system in South China. In general, 15 antibiotics were detected at least once in the watershed, with the total concentrations of antibiotics in the water samples ranging from 193.6 to 863.3 ng/L and 115.1 to 278.2 μg/kg in the sediment samples. For the water samples, higher rain runoff may contribute to the levels of total concentration in the river system, while perennial anthropic activity associated with the usage pattern of antibiotics may be an important factor determining similar sources and release mechanisms of antibiotics in the riparian environment. Meanwhile, the reservoir system could act as a stable reactor to influence the level and composition of antibiotics exported from the river system. For the sediment samples, hydrological factor in the reservoir may influence the antibiotic distributions along with seasonal variation. Ecological risk assessment revealed that tetracycline and ciprofloxacin could pose high risks in the aquatic environment. Taken together, further investigations should be performed to elaborate the environmental behaviors of antibiotics in the river-reservoir system, especially in drinking water sources.
Deepwater Chondrichthyan Bycatch of the Eastern King Prawn Fishery in the Southern Great Barrier Reef, Australia

The deepwater chondrichthyan fauna of the Great Barrier Reef is poorly known and life history information is required to enable their effective management as they are inherently vulnerable to exploitation. The chondrichthyan bycatch from the deepwater eastern king prawn fishery at the Swain Reefs in the southern Great Barrier Reef was examined to determine the species present and provide information on their life histories. In all, 1533 individuals were collected from 11 deepwater chondrichthyan species, with the Argus skate Dipturus polyommata, piked spurdog Squalus megalops and pale spotted catshark Asymbolus pallidus the most commonly caught. All but one species is endemic to Australia with five species restricted to waters offshore from Queensland. The extent of life history information available for each species varied but the life history traits across all species were characteristic of deep water chondrichthyans with relatively large length at maturity, small litters and low ovarian fecundity; all indicative of low biological productivity. However, variability among these traits and spatial and bathymetric distributions of the species suggests differing degrees of resilience to fishing pressure. To ensure the sustainability of these bycatch species, monitoring of their catches in the deepwater eastern king prawn fishery is recommended.
Therapeutic effect of epidural hyaluronic acid in a rat model of foraminal stenosis

Purpose Since receiving a warning from the US Food and Drug Administration (FDA) about injection of corticosteroids into the epidural space having serious adverse events, we have sought alternative medications for injection at this site. Hyaluronic acid (HA) has anti-adhesive, anti-inflammatory, and lubricating properties, so could potentially be useful for spinal pain. The exact mechanism by which spinal stenosis develops is not fully understood, but is likely to involve inflammation. Therefore, we hypothesized that HA could have a therapeutic effect in spinal stenosis. This study evaluated the effects of epidural administration of HA on alleviation of pain in a rat model of foraminal stenosis. Materials and methods After creating the animal model, HA (HA group) or saline solution (S group) was administered via an epidural catheter. The paw-withdrawal threshold to mechanical stimulation and motor dysfunction were monitored for up to 21 days. Tissue was collected to evaluate the degree of adhesion, inflammation in the perineural area, and chromatolysis in the dorsal root ganglion (DRG). Results The mechanical withdrawal threshold was restored in the HA group but not in the S group (P < 0.001). The HA group also showed less fibrosis (P = 0.026) and less chromatolysis (P = 0.002) than the S group. Conclusion HA administered epidurally had a therapeutic effect on the allodynia and hyperalgesia induced by chronic compression of the DRG.
EUROPSYCHOLOGICAL PATTERN AMONG HIV-1 INFECTED ASYMPTOMATIC MOTHERS REPORTING TO ANTENATAL CLINIC , AT AIIMS

Objective: The objective of the present study is to determine whether the HIV-1 infection in asymptomatic stage can have any statistically significant impact on neuropsychological performance. Material & Methods: The stratified purposive sampling technique was used for the selection of subjects. 41 HIV-infected asymptomatic subjects were selected for the study over a period of seven months at AIIMS, New Delhi. Result: The cognitive deficits can occur in individuals during the early phase of HIV-1 infection. 41 asymptomatic HIV positive patients were enrolled, (N-41, 15 males & 26 females) from PPTCT Center, AIIMS. On assessing the neuropsychological pattern, we found impairment in some neuropsychological pattern. The main impairment was observed in areas of tactile (66%), memory (39%), intelligence processes (26%), and arithmetic (17%). A small number of subjects also showed impairment in motor (4%) and visual functions (2%). No subject indicated any deficit in reading, writing expressive and receptive speech areas. Conclusion: We have observed greater deficit in tactile, intelligence, memory and arithmetic areas. The decrement in performance on specific neuropsychological tests implicates an early and selective involvement of different brain areas.
Long-Term Oncologic Outcomes for Patients Undergoing Volatile Versus Intravenous Anesthesia for Non-Small Cell Lung Cancer Surgery

Propofol-based total intravenous anesthesia (TIVA) has been reported to improve long-term outcome following cancer surgery, when compared with inhalation agents. However, such investigational reports are still controversial, and no studies have been conducted in relation to non-small cell lung cancer (NSCLC) surgery. The present study aimed to compare the favorable effects of TIVA versus inhalation agents on recurrence-free survival and overall survival after curative resection of NSCLC. This retrospective cohort study examined medical records of the patients who were diagnosed with NSCLC and underwent curative resection at Seoul National University Bundang Hospital from August 2003 to July 2012. The primary outcome included the comparison of postoperative overall survival and recurrence-free survival in both groups. To balance the 2 groups for analysis, a propensity matching method was used, and stratified Cox proportional hazard models were used for statistical analysis. This study included 943 cases of NSCLC for final analysis, and the cases were divided into the TIVA group (n = 749) and inhalation group (n = 194). Propensity matching produced 196 patients in each group. The final analysis revealed no significant difference in the hazard ratio (HR) for recurrence between the TIVA and inhalation groups (P = .233). The HR for death between the 2 groups was not significantly different either (P = .551). In this study, we found no benefit of propofol-based TIVA for long-term oncologic outcome after NSCLC surgery, relative to inhalation agents.
Effect of Low Dose Type I Fish Collagen Peptides Combined or not with Silicon on Skin Aging Signs in Mature Women

Clinical signs of dermal atrophy and skin aging (including skin dryness, hypo/hyperpigmentation, diminished skin elasticity and firmness) are associated with a reduction and disorganization of collagen [1,2]. Major changes of photoaging occur in the dermis. In photoaging, a profound decrease in collagen, glycosaminoglycans and proteoglycans is observed combined with a degeneration of elastic fibres (elastosis) resulting in a rough leathery skin surface with fine and coarse wrinkles [3]. Scanning electron microscopic examination has shown that the number and width of collagen fibre bundles decreases with age [4]. Collagen, particularly Types 1 and 3 collagen, is the major structural protein present in human skin [5,6].