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+{"text":"Antibodies against U1A (tested in Western immunoblotting with HeLa cell extracts) were positively associated to DRB1*06 allele; antibodies reacting with SmD1 peptide 44-67 were negatively associated to DRB1*02 and DQB1*0602 alleles. No association was found between DPB1 alleles and antibodies reacting with U1A and SmD1 antigens. ","meta":{"cell_lines":["HeLa"],"proteins":["RDR2","SNRPA","RDR2"],"pmid":"PMID10069423","pattern":"14, 14"},"_input_hash":1080104622,"_task_hash":-153012795,"spans":[{"text":"associated","start":98,"end":108,"pattern":-162601778},{"text":"associated","start":188,"end":198,"pattern":-162601778}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650897861}
+{"text":"In this study, we investigated treatment of established rat C6 cell gliomas by retroviral delivery of IL-4 in situ. Tumors grown subcutaneously in athymic nude mice or implanted intracranially in immunocompetent Wistar rats were implanted with ecotropic retrovirus (i.e., will replicate only in cells of closely related species) packaging cells (RPCs) that were transfected with a retroviral vector encoding mouse IL-4 (1C5 cells) or a control vector (SV cells). ","meta":{"cell_lines":["MOG-G-RAT","AICD58.8"],"proteins":["IL4"],"pmid":"PMID10070943","pattern":"11"},"_input_hash":1673505962,"_task_hash":-1661136594,"spans":[{"text":"related","start":312,"end":319,"pattern":-1745510188}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650961977}
+{"text":"EAT/mcl-1 showed increased expression during the differentiation of a multipotent human embryonic carcinoma cell line, NCR-G3, and of myeloblastic cells \"ML-1,\" and has sequence similarity to Bcl-2. In this present study, we determined whether the apoptotic cell death induced by chemotherapeutic agents could be inhibited by EAT/mcl-1, as has been found with Bcl-2. ","meta":{"cell_lines":["ML-1 [Human leukemia]","ML-1 [Human thyroid carcinoma]"],"proteins":["MCL1","BCL2","MCL1","BCL2"],"pmid":"PMID10081494","pattern":"1"},"_input_hash":446507280,"_task_hash":-482468957,"spans":[{"text":"expression","start":27,"end":37,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650962000}
+{"text":"In this report, we present evidence that p53 expression is affected in a similar manner by TS. For these studies, we used a TS-depleted human colon cancer HCT-C cell that had been transfected with either the human TS cDNA or the Escherichia coli TS gene. ","meta":{"cell_lines":["PAE-iPS-4"],"proteins":["TP53"],"pmid":"PMID10097112","pattern":"1"},"_input_hash":-718771225,"_task_hash":-2024897881,"spans":[{"text":"expression","start":45,"end":55,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962086}
+{"text":"For these studies, we used a TS-depleted human colon cancer HCT-C cell that had been transfected with either the human TS cDNA or the Escherichia coli TS gene. The level of p53 protein in transfected cells overexpressing human TS was significantly reduced when compared with its corresponding parent HCT-C cells. ","meta":{"cell_lines":["PAE-iPS-4"],"proteins":["TP53"],"pmid":"PMID10097112","pattern":"5"},"_input_hash":-128940329,"_task_hash":1941108561,"spans":[{"text":"overexpressing","start":206,"end":220,"pattern":1223495235}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962113}
+{"text":"This suppression of p53 expression was the direct result of decreased translational efficiency of p53 mRNA. Similar results were obtained upon transfection of HCT-C cells with pcDNA 3.1 (+) containing the E. coli TS gene. ","meta":{"cell_lines":["HCT C"],"proteins":["TP53"],"pmid":"PMID10097112","pattern":"1"},"_input_hash":-227068750,"_task_hash":-184830778,"spans":[{"text":"expression","start":24,"end":34,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650962157}
+{"text":"Similar results were obtained upon transfection of HCT-C cells with pcDNA 3.1 (+) containing the E. coli TS gene. These findings provide evidence that TS, from diverse species, specifically regulates p53 expression at the translational level. ","meta":{"cell_lines":["HCT C"],"proteins":["TP53"],"pmid":"PMID10097112","pattern":"1"},"_input_hash":1466258185,"_task_hash":-1458977782,"spans":[{"text":"expression","start":204,"end":214,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650962165}
+{"text":"In an attempt to find out whether the phenotype of HCT15 cells was indeed brought about solely by the lack of hMSH6, we stably transfected them with a vector carrying the wild-type hMSH6 cDNA. Our results show that although the levels of transgenic hMSH6 were low, expression of the wild-type protein resulted in a substantial restoration of mismatch binding, mismatch repair capacity and the stability of mononucleotide repeats, as well as in the reduction of mutation rates. ","meta":{"cell_lines":["HCT 15"],"proteins":["MSH6"],"pmid":"PMID10190549","pattern":"1"},"_input_hash":65225201,"_task_hash":-1897264829,"spans":[{"text":"expression","start":265,"end":275,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962195}
+{"text":"Plasmin also cleaves the TR78 exodomain at the R41 thrombin-cleavage site generating transiently activated exodomain. We directly demonstrated that plasmin cleaves these same sites in full-length membrane-embedded receptor expressed in yeast and COS7 fibroblasts. ","meta":{"cell_lines":["COS-7"],"proteins":["PLG"],"pmid":"PMID10194379","pattern":"2"},"_input_hash":-879837649,"_task_hash":1911710562,"spans":[{"text":"expressed","start":223,"end":232,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650962221}
+{"text":"We directly demonstrated that plasmin cleaves these same sites in full-length membrane-embedded receptor expressed in yeast and COS7 fibroblasts. The rate of plasmin truncation is similar between the extensively glycosylated COS7-expressed receptor and the nonglycosylated yeast-produced receptor. ","meta":{"cell_lines":["COS-7"],"proteins":["PLG"],"pmid":"PMID10194379","pattern":"2"},"_input_hash":1061848987,"_task_hash":35860210,"spans":[{"text":"expressed","start":105,"end":114,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650962229}
+{"text":"Studies from our laboratory have shown that the earliest stages of atherosclerosis may be mediated by an autoimmune reaction against heat shock protein 60 (Hsp60). The interactions of Hsp60-specific T cells with arterial endothelial cells (EC) require expression of both Hsp60 and certain adhesion molecules shown to be induced simultaneously in EC by mechanical and other types of stress. ","meta":{"cell_lines":["CeHSP60"],"proteins":["HSPD1","HSPD1","HSPD1"],"pmid":"PMID10203577","pattern":"1"},"_input_hash":-2096550759,"_task_hash":1706872115,"spans":[{"text":"expression","start":252,"end":262,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962278}
+{"text":"The interactions of Hsp60-specific T cells with arterial endothelial cells (EC) require expression of both Hsp60 and certain adhesion molecules shown to be induced simultaneously in EC by mechanical and other types of stress. ","meta":{"cell_lines":["CeHSP60"],"proteins":["HSPD1"],"pmid":"PMID10203577","pattern":"1"},"_input_hash":-272212711,"_task_hash":-562192052,"spans":[{"text":"expression","start":88,"end":98,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962288}
+{"text":"WEHI 164 cells that had been dually treated with tepoxalin and the antioxidant pyrrolidine dithiocarbamate (PDTC) were significantly protected from TNFalpha-induced killing. To study the role of free radicals in mediating TNFalpha-induced apoptosis, stable WEHI 164 cells overexpressing Bcl-2, an antioxidant protein, were generated. ","meta":{"cell_lines":["WEHI-164","WEHI-164"],"proteins":["BCL2"],"pmid":"PMID10336540","pattern":"5"},"_input_hash":720249159,"_task_hash":-348430310,"spans":[{"text":"overexpressing","start":272,"end":286,"pattern":1223495235}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962311}
+{"text":"To study the role of free radicals in mediating TNFalpha-induced apoptosis, stable WEHI 164 cells overexpressing Bcl-2, an antioxidant protein, were generated. ","meta":{"cell_lines":["WEHI-164"],"proteins":["BCL2"],"pmid":"PMID10336540","pattern":"5"},"_input_hash":-448153099,"_task_hash":1166548552,"spans":[{"text":"overexpressing","start":98,"end":112,"pattern":1223495235}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962320}
+{"text":"The transcription factors of the Myc/Max/Mad network are important regulators of cell growth, differentiation, and apoptosis and are frequently involved in tumor development. Constitutive expression of v-Myc blocks phorbol ester (TPA)-induced differentiation of human U-937 monoblasts. ","meta":{"cell_lines":["U-937"],"proteins":["MYC"],"pmid":"PMID10339499","pattern":"1"},"_input_hash":1782255371,"_task_hash":-1832285808,"spans":[{"text":"expression","start":188,"end":198,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650962384}
+{"text":"Constitutive expression of v-Myc blocks phorbol ester (TPA)-induced differentiation of human U-937 monoblasts. However, costimulation with interferon-gamma (IFN-gamma) and TPA restores terminal differentiation and G1 cell-cycle arrest despite continuous expression of v-Myc. ","meta":{"cell_lines":["U-937"],"proteins":["MYC","IFNG","IFNG","MYC"],"pmid":"PMID10339499","pattern":"1, 1"},"_input_hash":-1887928424,"_task_hash":1097932905,"spans":[{"text":"expression","start":13,"end":23,"pattern":283459217},{"text":"expression","start":254,"end":264,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650962403}
+{"text":"We then analyzed the regulatory mechanisms of ICE transcription, and found that IFN-induced activation of the ICE promoter was dependent on the binding of IRFs to its initiator (Inr) element. Inr binding of IRFs was markedly diminished in Daudi(res) cells, and forced expression of IRF-1 was able to activate the ICE promoter to the level of parental cells. ","meta":{"cell_lines":["Daudi"],"proteins":["IRF1"],"pmid":"PMID10359086","pattern":"1"},"_input_hash":1368198726,"_task_hash":1945395723,"spans":[{"text":"expression","start":268,"end":278,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962479}
+{"text":"Inr binding of IRFs was markedly diminished in Daudi(res) cells, and forced expression of IRF-1 was able to activate the ICE promoter to the level of parental cells. These results suggest that IRFs and their target genes, as represented by ICE in this study, are involved in IFN resistance.","meta":{"cell_lines":["Daudi"],"proteins":["IRF1"],"pmid":"PMID10359086","pattern":"1"},"_input_hash":147584923,"_task_hash":-933627251,"spans":[{"text":"expression","start":76,"end":86,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962496}
+{"text":"On the contrary, LND fails to activate the apoptotic program in the parental MCF7-sensitive cell line (MCF7 WT). The extent of bcl-2 expression might account for the different effect of LND on these cell lines. ","meta":{"cell_lines":["MCF-7","MCF-7"],"proteins":["BCL2"],"pmid":"PMID10360831","pattern":"1"},"_input_hash":-1033175542,"_task_hash":1748533216,"spans":[{"text":"expression","start":133,"end":143,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650962559}
+{"text":"The extent of bcl-2 expression might account for the different effect of LND on these cell lines. In fact, the MCF7 ADR line shows a low level of bcl-2 protein, whereas MCF7 WT expresses a high level of bcl-2. ","meta":{"cell_lines":["MCF-7","MCF-7"],"proteins":["BCL2","BCL2","BCL2"],"pmid":"PMID10360831","pattern":"1"},"_input_hash":1731979587,"_task_hash":475288172,"spans":[{"text":"expression","start":20,"end":30,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650962572}
+{"text":"This result is consistent with the finding that p21(Waf1/Cip1) is undetectable in UV-treated CHO.K1 cells, whereas Gadd45 is induced by UV light in the cells.","meta":{"cell_lines":["CHO-K1"],"proteins":["CDKN1A","GADD45A"],"pmid":"PMID10235114","score":0.2695677876},"_input_hash":-898616017,"_task_hash":1706175485,"label":"GOOD_MATCH","score":0.2695677876,"priority":0.2695677876,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650962606}
+{"text":"Newly developed antiviral compounds consisting of an adamantane derivative chemically linked to a water-soluble polyanionic matrix were shown to inhibit HIV-1 infection in lymphoblastoid cells, HeLa CD4+ beta-galactosidase (MAGI) cells and macrophages. The effect of the compounds was recorded by measuring viral reverse transcriptase activity and p24 by ELISA in culture supernatant and by immunoblotting of cell lysates. ","meta":{"cell_lines":["HeLa"],"proteins":["CD9"],"pmid":"PMID10320046","score":0.3680083454},"_input_hash":317943356,"_task_hash":401590285,"label":"GOOD_MATCH","score":0.3680083454,"priority":0.3680083454,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650962676}
+{"text":"We studied the effects of a series of di-aryl-substituted pyrazole NF-kappaB inhibitors including tepoxalin on tumor necrosis factor alpha (TNFalpha)-induced apoptosis in murine fibrosarcoma WEHI 164 cells. We found that potent inhibitors of NF-kappaB were also effective in attenuating apoptosis. ","meta":{"cell_lines":["WEHI-164"],"proteins":["TNF"],"pmid":"PMID10336540","score":0.1395665556},"_input_hash":-1700722072,"_task_hash":-2116964629,"label":"GOOD_MATCH","score":0.1395665556,"priority":0.1395665556,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650962731}
+{"text":"WEHI 164 cells that had been dually treated with tepoxalin and the antioxidant pyrrolidine dithiocarbamate (PDTC) were significantly protected from TNFalpha-induced killing. To study the role of free radicals in mediating TNFalpha-induced apoptosis, stable WEHI 164 cells overexpressing Bcl-2, an antioxidant protein, were generated. ","meta":{"cell_lines":["WEHI-164","WEHI-164"],"proteins":["BCL2"],"pmid":"PMID10336540","score":0.236015141},"_input_hash":720249159,"_task_hash":1765623161,"label":"GOOD_MATCH","score":0.236015141,"priority":0.236015141,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650962756}
+{"text":"To study the role of free radicals in mediating TNFalpha-induced apoptosis, stable WEHI 164 cells overexpressing Bcl-2, an antioxidant protein, were generated. ","meta":{"cell_lines":["WEHI-164"],"proteins":["BCL2"],"pmid":"PMID10336540","score":0.2549881935},"_input_hash":-448153099,"_task_hash":1890940847,"label":"GOOD_MATCH","score":0.2549881935,"priority":0.2549881935,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650962762}
+{"text":"Constitutive expression of v-Myc blocks phorbol ester (TPA)-induced differentiation of human U-937 monoblasts. However, costimulation with interferon-gamma (IFN-gamma) and TPA restores terminal differentiation and G1 cell-cycle arrest despite continuous expression of v-Myc. ","meta":{"cell_lines":["U-937"],"proteins":["MYC","IFNG","IFNG","MYC"],"pmid":"PMID10339499","score":0.4435842633},"_input_hash":-1887928424,"_task_hash":-1147123142,"label":"GOOD_MATCH","score":0.4435842633,"priority":0.4435842633,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650962826}
+{"text":"Inr binding of IRFs was markedly diminished in Daudi(res) cells, and forced expression of IRF-1 was able to activate the ICE promoter to the level of parental cells. These results suggest that IRFs and their target genes, as represented by ICE in this study, are involved in IFN resistance.","meta":{"cell_lines":["Daudi"],"proteins":["IRF1"],"pmid":"PMID10359086","score":0.1567449868},"_input_hash":147584923,"_task_hash":47061061,"label":"GOOD_MATCH","score":0.1567449868,"priority":0.1567449868,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650962841}
+{"text":"On the contrary, LND fails to activate the apoptotic program in the parental MCF7-sensitive cell line (MCF7 WT). The extent of bcl-2 expression might account for the different effect of LND on these cell lines. ","meta":{"cell_lines":["MCF-7","MCF-7"],"proteins":["BCL2"],"pmid":"PMID10360831","score":0.3240819573},"_input_hash":-1033175542,"_task_hash":954168878,"label":"GOOD_MATCH","score":0.3240819573,"priority":0.3240819573,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650962884}
+{"text":"The extent of bcl-2 expression might account for the different effect of LND on these cell lines. In fact, the MCF7 ADR line shows a low level of bcl-2 protein, whereas MCF7 WT expresses a high level of bcl-2. ","meta":{"cell_lines":["MCF-7","MCF-7"],"proteins":["BCL2","BCL2","BCL2"],"pmid":"PMID10360831","score":0.5573691726},"_input_hash":1731979587,"_task_hash":301114593,"label":"GOOD_MATCH","score":0.5573691726,"priority":0.5573691726,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650962894}
+{"text":"We demonstrated that over-expression of bcl-2 inhibited LND-induced apoptosis, while reducing 14CO2 production, oxygen uptake and ATP content, whereas aerobic lactate production was essentially unaffected. In addition, LND decreased the oxidative metabolism of the MCF7 ADR cells to a greater extent than it did in the bcl-2 transfectants.","meta":{"cell_lines":["MCF-7"],"proteins":["BCL2"],"pmid":"PMID10360831","score":0.454389751},"_input_hash":-348382159,"_task_hash":1324216773,"label":"GOOD_MATCH","score":0.454389751,"priority":0.454389751,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650962929}
+{"text":"Bcl-2 has been shown to function upstream of the death proteases (caspases) in some, but not all, occurrences of apoptotic cell death. Using the myeloid leukemic cell line P39 we report the chemotherapy-induced caspase-dependent cleavage of endogenous Bcl-2. ","meta":{"cell_lines":["P39"],"proteins":["BCL2","BCL2"],"pmid":"PMID10374876","score":0.5759118795},"_input_hash":1125318153,"_task_hash":1854652757,"label":"GOOD_MATCH","score":0.5759118795,"priority":0.5759118795,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650962952}
+{"text":"Using the myeloid leukemic cell line P39 we report the chemotherapy-induced caspase-dependent cleavage of endogenous Bcl-2. Etoposide treatment of these cells triggered a time-dependent activation of type II and type III caspases and cleavage of Bcl-2 yielding a 23 kDa cleavage fragment. ","meta":{"cell_lines":["P39"],"proteins":["BCL2","BCL2"],"pmid":"PMID10374876","score":0.5573487878},"_input_hash":-152656550,"_task_hash":-929094431,"label":"GOOD_MATCH","score":0.5573487878,"priority":0.5573487878,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650962965}
+{"text":"COLO201 colon cancer cells were stably transfected with human NQO1 cDNA that encodes NAD(P)H:quinone oxidoreductase (DT-diaphorase, DTD), and a clonal cell line with about 57-fold elevated DTD activity was obtained. Northern analysis revealed that expression of the NADPH:cytochrome P450 reductase (P450 reductase) gene was decreased in the transfectant, COLO201/NQO1, associated with the increase of NQO1 expression. ","meta":{"cell_lines":["COLO201","COLO 201","PAE-iPS-4","COLO201","COLO 201"],"proteins":["CRYZ","NQO1","NQO1","NQO1","NQO1"],"pmid":"PMID10391098","pattern":"1, 14, 1"},"_input_hash":-1581246847,"_task_hash":1306022272,"spans":[{"text":"expression","start":248,"end":258,"pattern":283459217},{"text":"associated","start":369,"end":379,"pattern":-162601778},{"text":"expression","start":406,"end":416,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963021}
+{"text":"Northern analysis revealed that expression of the NADPH:cytochrome P450 reductase (P450 reductase) gene was decreased in the transfectant, COLO201/NQO1, associated with the increase of NQO1 expression. Biochemical characterization of the cells showed a significant increase of the glutathione (GSH) content concomitantly with the decrease of the P450 reductase activity. ","meta":{"cell_lines":["COLO201","COLO 201"],"proteins":["NQO1"],"pmid":"PMID10391098","pattern":"1, 14, 1"},"_input_hash":771807061,"_task_hash":325524646,"spans":[{"text":"expression","start":32,"end":42,"pattern":283459217},{"text":"associated","start":153,"end":163,"pattern":-162601778},{"text":"expression","start":190,"end":200,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963051}
+{"text":"Neither plasmid DNA nor a recombinant retroviral vector induced hsp expression in transduced B16 melanoma cells. However, hsp70 was upregulated after infection with two of six adenoviral vectors; this induction of hsp70 did not correlate with the adenoviral transgene or with the viral backbone (Ad2 or Ad5). ","meta":{"cell_lines":["B16"],"proteins":["HSPA1A","HSPA1A"],"pmid":"PMID10395369","pattern":"1"},"_input_hash":-2100923634,"_task_hash":-1514199733,"spans":[{"text":"expression","start":68,"end":78,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963145}
+{"text":"For secretion of recombinant tPA from Bm5 cells, the native human tPA signal peptide is as effectively recognized as an insect specific signal peptide derived from a silkmoth chorion gene. Finally, stably transformed polyclonal populations of Bm5, High Five, and Sf21 cells expressing tPA were generated and compared for relative tPA expression.","meta":{"cell_lines":["Bm5","BM5","Sf21"],"proteins":["PLAT","PLAT","PLAT","PLAT"],"pmid":"PMID10397881","pattern":"4, 1"},"_input_hash":-476748875,"_task_hash":-537200033,"spans":[{"text":"expressing","start":274,"end":284,"pattern":-1894080012},{"text":"expression","start":334,"end":344,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963196}
+{"text":"Finally, stably transformed polyclonal populations of Bm5, High Five, and Sf21 cells expressing tPA were generated and compared for relative tPA expression.","meta":{"cell_lines":["Sf21"],"proteins":["PLAT","PLAT"],"pmid":"PMID10397881","pattern":"4, 1"},"_input_hash":-1430773886,"_task_hash":2006280016,"spans":[{"text":"expressing","start":85,"end":95,"pattern":-1894080012},{"text":"expression","start":145,"end":155,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963203}
+{"text":"Reverse transcription- polymerase chain reaction analysis revealed that these isoforms are not expressed uniformly but are differentially expressed in various cell lines. Both purified periostin protein and the periostin-Fc recombinant protein supported attachment and spreading of MC3T3-E1 cells, and this effect was impaired by antiperiostin antiserum, suggesting that periostin is involved in cell adhesion. ","meta":{"cell_lines":["MC3T3"],"proteins":["POSTN","POSTN","POSTN"],"pmid":"PMID10404027","pattern":"2, 2"},"_input_hash":-1397866044,"_task_hash":1460539672,"spans":[{"text":"expressed","start":95,"end":104,"pattern":784610258},{"text":"expressed","start":138,"end":147,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963255}
+{"text":"While it is well known that interferon-gamma (IFN gamma) and tumor necrosis factor-alpha (TNF alpha) play a role in the regulation of thyroid growth and differentiated functions, the cellular and molecular mechanisms involved in mediating the effects of IFN gamma and TNF alpha on thyroid function are unknown. In the present study, we used FRTL-5 rat thyroid cells to examine the effects of IFN gamma and TNF alpha on gene expression of transcription factor interferon regulatory factor-1 (IRF-1), which is involved in mediating the effects of these cytokines in a number of cell types. ","meta":{"cell_lines":["FRTL-5","MOG-G-RAT"],"proteins":["IFNG","IFNG","TNF","TNF","IFNG","TNF","IFNG","TNF","IRF1"],"pmid":"PMID10404391","pattern":"1"},"_input_hash":516765723,"_task_hash":444167902,"spans":[{"text":"expression","start":424,"end":434,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963311}
+{"text":"In the present study, we used FRTL-5 rat thyroid cells to examine the effects of IFN gamma and TNF alpha on gene expression of transcription factor interferon regulatory factor-1 (IRF-1), which is involved in mediating the effects of these cytokines in a number of cell types. ","meta":{"cell_lines":["FRTL-5","MOG-G-RAT"],"proteins":["IFNG","TNF","IRF1"],"pmid":"PMID10404391","pattern":"1"},"_input_hash":-702600500,"_task_hash":639516848,"spans":[{"text":"expression","start":113,"end":123,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963324}
+{"text":"Incubation of FRTL-5 cells with IFN gamma or TNF alpha resulted in a dose- and time-dependent increase in IRF-1 mRNA levels. We have shown that TNF-alpha and IFN-gamma act synergistically to block the TSH-induced increase in type I 5'-deiodinase(5'D-I) activity and 5'D-I gene expression in FRTL-5 rat thyroid cells. ","meta":{"cell_lines":["FRTL-5","FRTL-5","MOG-G-RAT"],"proteins":["IFNG","TNF","TNF","IFNG"],"pmid":"PMID10404391","pattern":"1"},"_input_hash":752275686,"_task_hash":-813491767,"spans":[{"text":"expression","start":277,"end":287,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963334}
+{"text":"We have shown that TNF-alpha and IFN-gamma act synergistically to block the TSH-induced increase in type I 5'-deiodinase(5'D-I) activity and 5'D-I gene expression in FRTL-5 rat thyroid cells. Incubation of FRTL-5 cells with IFN gamma and TNF alpha in combination, however, did not synergistically increase IRF-1 mRNA levels. ","meta":{"cell_lines":["FRTL-5","MOG-G-RAT","FRTL-5"],"proteins":["TNF","IFNG","IFNG","TNF"],"pmid":"PMID10404391","pattern":"1"},"_input_hash":-995330376,"_task_hash":980881553,"spans":[{"text":"expression","start":152,"end":162,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650963344}
+{"text":"Only heparin and 2,3-diphosphoglycerate (dpGA) prevented C9 phosphorylation, indicating that the ecto-PK is related to the casein kinase CK2. C9 can be phosphorylated by ecto-PK from other tumor cells, including Jurkat, SK-OV-3 and BT-474. ","meta":{"cell_lines":["Jurkat","BT-474"],"proteins":["CSN1S1"],"pmid":"PMID10408378","pattern":"11"},"_input_hash":-2037230706,"_task_hash":1965129637,"spans":[{"text":"related","start":108,"end":115,"pattern":-1745510188}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650968406}
+{"text":"The concentrations of retinol and 3,4-didehydroretinol in cultured HaCaT cells were less than one-fifth those in HEK, and the content of fatty acyl esters was even lower. Similarly, the concentrations of cellular retinol-binding protein and cellular retinoic acid-binding protein (CRBPI and CRABPII, respectively) were 10-30 times lower in HaCaT cells than in HEK corresponding to a reduced mRNA expression of these proteins. ","meta":{"cell_lines":["HaCaT","HEK","HaCaT","HEK"],"proteins":["RBP1","RBP1"],"pmid":"PMID10421060","pattern":"1"},"_input_hash":2081061461,"_task_hash":921360508,"spans":[{"text":"expression","start":396,"end":406,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650968485}
+{"text":"Similarly, the concentrations of cellular retinol-binding protein and cellular retinoic acid-binding protein (CRBPI and CRABPII, respectively) were 10-30 times lower in HaCaT cells than in HEK corresponding to a reduced mRNA expression of these proteins. Unexpectedly, HaCaT cells expressed RARbeta in addition to RARalpha, RARgamma and RXRalpha, which are nuclear receptors normally found in HEK. ","meta":{"cell_lines":["HaCaT","HEK","HaCaT","HEK"],"proteins":["RBP1","RBP1"],"pmid":"PMID10421060","pattern":"1, 2"},"_input_hash":-244235269,"_task_hash":-2010639714,"spans":[{"text":"expression","start":225,"end":235,"pattern":283459217},{"text":"expressed","start":281,"end":290,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650968496}
+{"text":"After 24 h of incubation with [3H]retinol, cell-associated radioactivity corresponding to retinol, 3,4-didehydroretinol, all-trans-retinoic acid and 3,4-didehydroretinoic acid was found in both HaCaT cells and HEK. [3H]Retinoic acid showed a more rapid metabolism to 4-hydroxy/4-keto-retinoic acid in HaCaT cells than in HEK, which could be explained by a higher expression of cytochrome p450RAI in the former cells. ","meta":{"cell_lines":["HaCaT","HEK","HaCaT","HEK"],"proteins":["CYP26A1"],"pmid":"PMID10421060","pattern":"1"},"_input_hash":-743921669,"_task_hash":1042767244,"spans":[{"text":"expression","start":363,"end":373,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650968527}
+{"text":"[3H]Retinoic acid showed a more rapid metabolism to 4-hydroxy/4-keto-retinoic acid in HaCaT cells than in HEK, which could be explained by a higher expression of cytochrome p450RAI in the former cells. In conclusion, the abnormal uptake of vitamin A and low levels of retinoid binding proteins in HaCaT cells, linked with an aberrant metabolism of retinol, may help to explain why these cells differentiate also in the presence of retinoids.","meta":{"cell_lines":["HaCaT","HEK","HaCaT"],"proteins":["CYP26A1"],"pmid":"PMID10421060","pattern":"1"},"_input_hash":-1989133458,"_task_hash":-1170218325,"spans":[{"text":"expression","start":148,"end":158,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650968549}
+{"text":"Susceptible, but not resistant, strains of rodents immunized for induction of experimental autoimmune uveitis (EAU) with the uveitogenic protein interphotoreceptor retinoid-binding protein (IRBP) exhibit a type 1 response at the time of disease expression. Here we investigate the evolution of this response using the prototypic EAU-susceptible and EAU-resistant mouse strains, B10.A and BALB/c. ","meta":{"cell_lines":["CV-hIPS-B-control APP edition clone B10"],"proteins":["RBP3","RBP3"],"pmid":"PMID10421788","pattern":"1"},"_input_hash":986380673,"_task_hash":1987049560,"spans":[{"text":"expression","start":245,"end":255,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650968600}
+{"text":"Several lines of evidence suggest that TNF alpha activates transcription factor nuclear factor-kappa B (NF kappa B) through activation of protein kinase C (PKC) or the hydrolysis of sphingomyelin to ceramide in a number of cell types. Here we demonstrate that hydrolysis of sphingomyelin to ceramide by sphingomyelinase (SMase), but not activation of PKC by 12-O-tetradecanoylphorbol 13-acetate (TPA), was involved in the activation of NF kappa B in FRTL-5 cells. ","meta":{"cell_lines":["FRTL-5"],"proteins":["TNF","PRKCA","PRKCA"],"pmid":"PMID10404391","score":0.4835267663},"_input_hash":601063722,"_task_hash":-1116729266,"label":"GOOD_MATCH","score":0.4835267663,"priority":0.4835267663,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650968666}
+{"text":"Here we demonstrate that hydrolysis of sphingomyelin to ceramide by sphingomyelinase (SMase), but not activation of PKC by 12-O-tetradecanoylphorbol 13-acetate (TPA), was involved in the activation of NF kappa B in FRTL-5 cells. Similarly, hydrolysis of sphingomyelin to ceramide, but not activation of PKC, resulted in an increased in IRF-1 mRNA levels in FRTL-5 cells. ","meta":{"cell_lines":["FRTL-5","FRTL-5"],"proteins":["PRKCA","PRKCA"],"pmid":"PMID10404391","score":0.4607111216},"_input_hash":1237873767,"_task_hash":1547960627,"label":"GOOD_MATCH","score":0.4607111216,"priority":0.4607111216,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650968691}
+{"text":"These ecto-PKs have been shown to phosphorylate several exogenous substrates, including the complement C9 protein, an essential component of the terminal complement system. C9 is phosphorylated by ecto-PK of K562 cells on serine residue(s). ","meta":{"cell_lines":["K-562"],"proteins":["ARAF"],"pmid":"PMID10408378","score":0.5542341471},"_input_hash":809631850,"_task_hash":-881777894,"label":"GOOD_MATCH","score":0.5542341471,"priority":0.5542341471,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650968721}
+{"text":"Here we show that the withdrawal from DA potentiates the PRL-releasing action of TRH in GH(4)C(1)/D(2)-DAR cells to the same extent as in enriched lactotropes in primary culture. In both experimental models a low density of dihydropyridine receptors was shown by (+)-[(3)H]PN200-110 binding. ","meta":{"cell_lines":["QIMR-DAR"],"proteins":["TRH"],"pmid":"PMID10420091","score":0.5989287496},"_input_hash":2125306993,"_task_hash":-1797221941,"label":"GOOD_MATCH","score":0.5989287496,"priority":0.5989287496,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650968762}
+{"text":"[3H]Retinoic acid showed a more rapid metabolism to 4-hydroxy/4-keto-retinoic acid in HaCaT cells than in HEK, which could be explained by a higher expression of cytochrome p450RAI in the former cells. In conclusion, the abnormal uptake of vitamin A and low levels of retinoid binding proteins in HaCaT cells, linked with an aberrant metabolism of retinol, may help to explain why these cells differentiate also in the presence of retinoids.","meta":{"cell_lines":["HaCaT","HEK","HaCaT"],"proteins":["CYP26A1"],"pmid":"PMID10421060","score":0.7292019725},"_input_hash":-1989133458,"_task_hash":1803918992,"label":"GOOD_MATCH","score":0.7292019725,"priority":0.7292019725,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650968783}
+{"text":"We studied the antitumor activity and toxicity of ZD1694 (tomudex), a specific inhibitor of thymidylate synthase (TS), in nude mice bearing human head and neck squamous cell carcinoma A253 and FaDu xenografts. ","meta":{"cell_lines":["A-253"],"proteins":["TYMS"],"pmid":"PMID10430100","score":0.4549450576},"_input_hash":379914620,"_task_hash":-1087410791,"label":"GOOD_MATCH","score":0.4549450576,"priority":0.4549450576,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650968830}
+{"text":"In humans, overproduction of apolipoprotein B (apoB) is positively associated with premature coronary artery diseases. To modulate apoB gene expression, we designed hammerhead ribozymes targeted at AUA(6665) and GUA(6679) of apoB mRNA, designated RB16 and RB15, respectively, and investigated their effects on apoB mRNA in HepG2 cells. ","meta":{"cell_lines":["Hep-G2"],"proteins":["APOB"],"pmid":"PMID10446190","pattern":"14, 1"},"_input_hash":625981396,"_task_hash":-684564745,"spans":[{"text":"associated","start":67,"end":77,"pattern":-162601778},{"text":"expression","start":141,"end":151,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650968871}
+{"text":"1,25(OH)2D3 mediates its biological activities through specific binding to the vitamin D3 receptor (VDR) and subsequent association with vitamin D3 response elements (VDRE) in genes modulated by 1,25(OH)2D3. Several novel vitamin D3 cmpds have recently been identified which have 5- to 1000-fold greater abilities to induce differentiation and to inhibit proliferation of prostate cancer, breast cancer and HL-60 leukemic blast cells as compared to the parental 1,25(OH)2D3. ","meta":{"cell_lines":["HL-60"],"proteins":["VDR"],"pmid":"PMID10470102","pattern":"10"},"_input_hash":-597566237,"_task_hash":-897937357,"spans":[{"text":"identified","start":258,"end":268,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650968910}
+{"text":"Immunocytochemical analysis demonstrated that subpopulation D showed greater expression of MUC1 mucin and carbohydrate antigens such as Tn antigen, sialyl Lewis x and Lewis y and less expression of cytokeratins, p53, MUC5B and gp230; conversely, subpopulations A, B and C showed the opposite antigenic profile. Our results illustrate heterogeneity in the A549 cell line; subpopulations A, B and C retained characteristics of more differentiated adenocarcinoma while subpopulation D displayed features of a less differentiated tumor line.","meta":{"cell_lines":["A-549"],"proteins":["TP53","MUC5B"],"pmid":"PMID10491017","pattern":"1, 1"},"_input_hash":1793011112,"_task_hash":1590795816,"spans":[{"text":"expression","start":77,"end":87,"pattern":283459217},{"text":"expression","start":184,"end":194,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650968950}
+{"text":"Human beta-defensin-2 (hBD-2) is an antimicrobial peptide which belongs to one of the most important host defense systems against bacterial infection in several epithelial tissues. We studied the effect of H. pylori on the expression of hBD-2 mRNA in MKN45 gastric mucosal cells. ","meta":{"cell_lines":["MKN45"],"proteins":["DEFB4A"],"pmid":"PMID10512755","pattern":"1"},"_input_hash":-1238576477,"_task_hash":-1630116554,"spans":[{"text":"expression","start":223,"end":233,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650968998}
+{"text":"However, overexpression of HSP90 did not block induction of an estrogen-responsive reporter plasmid. To determine whether ER facilitates AhR signaling through its ability to squelch HSP90, two vectors expressing protein products that bind HSP90 were transfected into MDA-MB-231 cells. ","meta":{"cell_lines":["MDA-MB-231"],"proteins":["HSP90AA1","AHR","HSP90AA1","HSP90AA1"],"pmid":"PMID10513983","pattern":"0, 4"},"_input_hash":-1673579828,"_task_hash":-313913847,"spans":[{"text":"overexpression","start":9,"end":23,"pattern":1693961019},{"text":"expressing","start":201,"end":211,"pattern":-1894080012}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650969012}
+{"text":"To determine whether ER facilitates AhR signaling through its ability to squelch HSP90, two vectors expressing protein products that bind HSP90 were transfected into MDA-MB-231 cells. Introduction of (i) He11, an ER deletion mutant that does not bind DNA, and (ii) the ligand-binding domain of human AhR, both led to increased basal and TCDD-inducible CYP1A1 expression. ","meta":{"cell_lines":["MDA-MB-231"],"proteins":["AHR","HSP90AA1","HSP90AA1","AHR","CYP1A1"],"pmid":"PMID10513983","pattern":"4, 1"},"_input_hash":-1046840878,"_task_hash":687241016,"spans":[{"text":"expressing","start":100,"end":110,"pattern":-1894080012},{"text":"expression","start":359,"end":369,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650969030}
+{"text":"Transient transfection studies in mouse corticotroph AtT-20 cells demonstrated that internal deletion of the nGRE (-278 to -249 nucleotides) within the context of 1 kb of the intact CRH promoter resulted in decreased 8-BrcAMP stimulation and glucocorticoid-dependent repression of CRH promoter activity. The nGRE conferred transcriptional activation by both cAMP and overexpressed c-jun or c-fos AP-1 nucleoproteins as well as specific glucocorticoid-dependent repression to a heterologous promoter. ","meta":{"cell_lines":["CRL-6440","AtT-20"],"proteins":["FOS","JUN"],"pmid":"PMID10517666","pattern":"3"},"_input_hash":60513812,"_task_hash":-1630206648,"spans":[{"text":"overexpressed","start":367,"end":380,"pattern":-1415080216}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650969054}
+{"text":"In other parts of the developing CNS and PNS, EMP1 was also detected in early neurons and along the initial fiber tracts. Furthermore, EMP1 was highly expressed by immature neurons in embryonal dorsal root ganglia-explant cultures and in neuroectodermal differentiated P19 cells. ","meta":{"cell_lines":["P19"],"proteins":["EMP1","EMP1"],"pmid":"PMID10521561","pattern":"6, 2"},"_input_hash":1707395992,"_task_hash":-432679136,"spans":[{"text":"detected","start":60,"end":68,"pattern":-2284118},{"text":"expressed","start":151,"end":160,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650969090}
+{"text":"Furthermore, EMP1 was highly expressed by immature neurons in embryonal dorsal root ganglia-explant cultures and in neuroectodermal differentiated P19 cells. While PMP22 functions mainly in Schwann cell growth and differentiation, the spatio-temporal localization of EMP1 suggests a role in neuronal differentiation and neurite outgrowth.","meta":{"cell_lines":["P19"],"proteins":["EMP1","EMP1"],"pmid":"PMID10521561","pattern":"2"},"_input_hash":-1758298919,"_task_hash":-1325654344,"spans":[{"text":"expressed","start":29,"end":38,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650969097}
+{"text":"Regardless of various conditioning, we failed to determine any significant eotaxin generation by peripheral leukocytes and vein endothelial cells (less than 20 pg/ml). A small amount of immunoreactive eotaxin was detected in cultures of A549 bronchial epithelial cell line cells. ","meta":{"cell_lines":["A-549"],"proteins":["CCL11","CCL11"],"pmid":"PMID10525313","pattern":"6"},"_input_hash":-1227199728,"_task_hash":479015577,"spans":[{"text":"detected","start":213,"end":221,"pattern":-2284118}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650969127}
+{"text":"A small amount of immunoreactive eotaxin was detected in cultures of A549 bronchial epithelial cell line cells. In contrast, dermal fibroblasts were capable of generating extremely high, and potentially biologically relevant, amounts of eotaxin protein (on the order of ng/ml). ","meta":{"cell_lines":["A-549"],"proteins":["CCL11","CCL11"],"pmid":"PMID10525313","pattern":"6, 12"},"_input_hash":-1139721771,"_task_hash":-1795135178,"spans":[{"text":"detected","start":45,"end":53,"pattern":-2284118},{"text":"relevant","start":216,"end":224,"pattern":-1616299467}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650969135}
+{"text":"We have previously shown the increased production of interleukin 6 (IL-6) and IL-8 and the upregulation in intercellular adhesion molecule 1 (ICAM-1) expression by HUVEC following gamma ray exposure. In the present study, we used the cytokines IL-4 and IL-10 to regulate these radiation-induced manifestations. ","meta":{"cell_lines":["HUVEC-C"],"proteins":["IL6","IL6","CXCL8","ICAM1","ICAM1","IL4","IL10"],"pmid":"PMID10547270","pattern":"1"},"_input_hash":-595382684,"_task_hash":713074920,"spans":[{"text":"expression","start":150,"end":160,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650969163}
+{"text":"Menin was stably overexpressed in a well-characterized murine tumor cell line, (valine-12)-RAS-transformed NIH3T3 cells. Menin overexpression reverted the morphology of the RAS-transformed NIH3T3 cells towards the more flattened and more spread, fibroblastic shape of wild type NIH3T3 cells. ","meta":{"cell_lines":["NIH 3T3"],"proteins":["MEN1","MEN1"],"pmid":"PMID10557080","pattern":"3, 0"},"_input_hash":-398537340,"_task_hash":872954804,"spans":[{"text":"overexpressed","start":17,"end":30,"pattern":-1415080216},{"text":"overexpression","start":127,"end":141,"pattern":1693961019}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650969171}
+{"text":"Menin overexpression reverted the morphology of the RAS-transformed NIH3T3 cells towards the more flattened and more spread, fibroblastic shape of wild type NIH3T3 cells. The proliferation rate of the RAS-transformed cells in 0.5% calf serum was also slower with menin overexpression. ","meta":{"cell_lines":["NIH 3T3"],"proteins":["MEN1"],"pmid":"PMID10557080","pattern":"0, 0"},"_input_hash":2059479639,"_task_hash":-729199875,"spans":[{"text":"overexpression","start":6,"end":20,"pattern":1693961019},{"text":"overexpression","start":269,"end":283,"pattern":1693961019}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650969180}
+{"text":"When expressed in an alpha-cell line, PAX4 represses transcription through the glucagon or insulin promoters or through an isolated PAX4 binding site. This repression is not simply due to competition with the PAX6 transcriptional activator for the same binding site, since PAX4 fused to the unrelated yeast GAL4 DNA binding domain also represses transcription through the GAL4 binding site in the alpha-cell line and to a lesser degree in beta-cell lines and NIH 3T3 cells. ","meta":{"cell_lines":["Beta","NIH 3T3"],"proteins":["PAX6","GAL4"],"pmid":"PMID10567552","pattern":"2"},"_input_hash":-1032147004,"_task_hash":-1765993456,"spans":[{"text":"expressed","start":5,"end":14,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650969236}
+{"text":"Short-term NO-treatment of P815 mastocytoma cells, also sensitive to NO-mediated cell death, decreased GSH to a similar extent only if either glutathione reductase (GSHR) activity or y-glutamylcysteine synthetase (gammaGCS) activity were inhibited concomitantly by specific inhibitors. Long-term NO-treatment of P815 cells, however, resulted in a significant decrease of GSH that could be further enhanced by inhibiting gammaGCS activity. ","meta":{"cell_lines":["P815","P815"],"proteins":["GLR1"],"pmid":"PMID10515581","score":0.4486769736},"_input_hash":-845041719,"_task_hash":-949481208,"label":"GOOD_MATCH","score":0.4486769736,"priority":0.4486769736,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650969281}
+{"text":"In other parts of the developing CNS and PNS, EMP1 was also detected in early neurons and along the initial fiber tracts. Furthermore, EMP1 was highly expressed by immature neurons in embryonal dorsal root ganglia-explant cultures and in neuroectodermal differentiated P19 cells. ","meta":{"cell_lines":["P19"],"proteins":["EMP1","EMP1"],"pmid":"PMID10521561","score":0.6061774492},"_input_hash":1707395992,"_task_hash":-1055318843,"label":"GOOD_MATCH","score":0.6061774492,"priority":0.6061774492,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650969298}
+{"text":"Furthermore, EMP1 was highly expressed by immature neurons in embryonal dorsal root ganglia-explant cultures and in neuroectodermal differentiated P19 cells. While PMP22 functions mainly in Schwann cell growth and differentiation, the spatio-temporal localization of EMP1 suggests a role in neuronal differentiation and neurite outgrowth.","meta":{"cell_lines":["P19"],"proteins":["EMP1","EMP1"],"pmid":"PMID10521561","score":0.4494964182},"_input_hash":-1758298919,"_task_hash":-1933008470,"label":"GOOD_MATCH","score":0.4494964182,"priority":0.4494964182,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650969305}
+{"text":"Regardless of various conditioning, we failed to determine any significant eotaxin generation by peripheral leukocytes and vein endothelial cells (less than 20 pg/ml). A small amount of immunoreactive eotaxin was detected in cultures of A549 bronchial epithelial cell line cells. ","meta":{"cell_lines":["A-549"],"proteins":["CCL11","CCL11"],"pmid":"PMID10525313","score":0.5142091513},"_input_hash":-1227199728,"_task_hash":2049652678,"label":"GOOD_MATCH","score":0.5142091513,"priority":0.5142091513,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1650970203}
+{"text":"Human umbilical vascular endothelial cells (HUVEC) were treated with IL-4 and IL-10 (50 pg/ml) either before or after 10- Gy irradiation. Three and seven days after irradiation, IL-6 and IL-8 production by HUVEC (either treated or non-treated) was assessed by enzyme-linked immunosorbent assay (ELISA). ","meta":{"cell_lines":["HUVEC-C","HUVEC-C"],"proteins":["IL4","IL10","IL6","CXCL8"],"pmid":"PMID10547270","score":0.5726231933},"_input_hash":-813813666,"_task_hash":-551807062,"label":"GOOD_MATCH","score":0.5726231933,"priority":0.5726231933,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650970235}
+{"text":"Menin overexpression reverted the morphology of the RAS-transformed NIH3T3 cells towards the more flattened and more spread, fibroblastic shape of wild type NIH3T3 cells. The proliferation rate of the RAS-transformed cells in 0.5% calf serum was also slower with menin overexpression. ","meta":{"cell_lines":["NIH 3T3"],"proteins":["MEN1"],"pmid":"PMID10557080","score":0.7705129385},"_input_hash":2059479639,"_task_hash":-1818838879,"label":"GOOD_MATCH","score":0.7705129385,"priority":0.7705129385,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650970251}
+{"text":"When expressed in an alpha-cell line, PAX4 represses transcription through the glucagon or insulin promoters or through an isolated PAX4 binding site. This repression is not simply due to competition with the PAX6 transcriptional activator for the same binding site, since PAX4 fused to the unrelated yeast GAL4 DNA binding domain also represses transcription through the GAL4 binding site in the alpha-cell line and to a lesser degree in beta-cell lines and NIH 3T3 cells. ","meta":{"cell_lines":["Beta","NIH 3T3"],"proteins":["PAX6","GAL4"],"pmid":"PMID10567552","score":0.7193116546},"_input_hash":-1032147004,"_task_hash":1737983780,"label":"GOOD_MATCH","score":0.7193116546,"priority":0.7193116546,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1650970290}
+{"text":"These chimeric receptors, one containing the p75 transmembrane domain and the other containing the FasR transmembrane portion, as well as wild-type p75 and Fas receptors, were transiently transfected into human U373 glioma cells and human embryonic kidney 293 cells (293 cells), which are both responsive to Fas-mediated apoptosis. Whereas expression of FasR was sufficient to induce apoptosis in U373 and 293 cells, expression of p75 and the chimeric receptors induced only minimal levels of cell death compared to FasR. The results indicate that the magnitudes of FasR- and p75-induced killing are different and suggest that the death domain of p75 does not function in the same manner as the FasR death domain.","meta":{"cell_lines":["U-373MG ATCC","U-373MG Uppsala","HEK293","HEK293","U-373MG ATCC","U-373MG Uppsala"],"proteins":["TNFRSF1B","TNFRSF1B","FASN","TNFRSF1B","TNFRSF1B"],"pmid":"PMID10578183","pattern":"1, 1"},"_input_hash":887344988,"_task_hash":13786586,"spans":[{"text":"expression","start":340,"end":350,"pattern":283459217},{"text":"expression","start":417,"end":427,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650970309}
+{"text":"Whereas expression of FasR was sufficient to induce apoptosis in U373 and 293 cells, expression of p75 and the chimeric receptors induced only minimal levels of cell death compared to FasR. The results indicate that the magnitudes of FasR- and p75-induced killing are different and suggest that the death domain of p75 does not function in the same manner as the FasR death domain.","meta":{"cell_lines":["U-373MG ATCC","U-373MG Uppsala"],"proteins":["TNFRSF1B","TNFRSF1B"],"pmid":"PMID10578183","pattern":"1, 1"},"_input_hash":474379641,"_task_hash":-1753177801,"spans":[{"text":"expression","start":8,"end":18,"pattern":283459217},{"text":"expression","start":85,"end":95,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650970347}
+{"text":"The signaling pathways underlying the insulinotropic effect of PACAP involve mainly the activation of adenylate cyclase to form cAMP, which directly and indirectly, through increased intracellular Ca2+, stimulates insulin exocytosis. In the present study we have characterized the functional and molecular expression of PACAP/vasoactive intestinal polypeptide receptors isoforms and subtypes and its isoforms in a beta-cell line and in isolated rat pancreatic islets. ","meta":{"cell_lines":["Beta"],"proteins":["ADCYAP1","INS","VIP","ADCYAP1"],"pmid":"PMID10579316","pattern":"1"},"_input_hash":1056103616,"_task_hash":1813043229,"spans":[{"text":"expression","start":306,"end":316,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650970379}
+{"text":"In the present study we have characterized the functional and molecular expression of PACAP/vasoactive intestinal polypeptide receptors isoforms and subtypes and its isoforms in a beta-cell line and in isolated rat pancreatic islets. Although insulinoma cells express the messenger RNA encoding PAC1 (-R and -hop variants), VPAC1 and VPAC2, binding experiments indicate the preponderance of PAC1 over VPAC 1-2 receptors. ","meta":{"cell_lines":["Beta"],"proteins":["VIP","ADCYAP1","DUSP2","VIPR1","VIPR2","DUSP2"],"pmid":"PMID10579316","pattern":"1, 16"},"_input_hash":752363568,"_task_hash":147823361,"spans":[{"text":"expression","start":72,"end":82,"pattern":283459217},{"text":"express","start":260,"end":267,"pattern":-2002329810}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650970392}
+{"text":"Full-length TrkB (trkB.FL) as well as truncated TrkB (trkB.t1) were found to be localized primarily to the postsynaptic acetylcholine receptor- (AChR-) rich membrane at neuromuscular junctions. In vivo, dominant-negative manipulation of TrkB signaling using adenovirus to overexpress trkB.t1 in mouse sternomastoid muscle fibers resulted in the disassembly of postsynaptic AChR clusters at neuromuscular junctions, similar to that observed in mutant trkB+/- mice. ","meta":{"cell_lines":["CRL-6440"],"proteins":["NTRK2","NTRK2","NTRK2","NTRK2"],"pmid":"PMID10595510","pattern":"17"},"_input_hash":1892034375,"_task_hash":-1014464682,"spans":[{"text":"overexpress","start":272,"end":283,"pattern":-2055691624}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650970432}
+{"text":"In vivo, dominant-negative manipulation of TrkB signaling using adenovirus to overexpress trkB.t1 in mouse sternomastoid muscle fibers resulted in the disassembly of postsynaptic AChR clusters at neuromuscular junctions, similar to that observed in mutant trkB+/- mice. When TrkB-mediated signaling was disrupted in cultured myotubes in the absence of motor nerve terminals and Schwann cells, agrin-induced AChR clusters were also disassembled. ","meta":{"cell_lines":["CRL-6440"],"proteins":["NTRK2"],"pmid":"PMID10595510","pattern":"17"},"_input_hash":193621515,"_task_hash":1219536258,"spans":[{"text":"overexpress","start":78,"end":89,"pattern":-2055691624}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650970446}
+{"text":"M. smegmatis bacteria expressing the M. tuberculosis glutamine synthetase A (glnA) gene or open reading frame Rv2962c or Rv2958c demonstrated significantly increased survival rates in THP-1 macrophages relative to those of xylE-expressing bacteria. ","meta":{"cell_lines":["THP-1"],"proteins":["GLUL"],"pmid":"PMID10603413","pattern":"4"},"_input_hash":-1357397460,"_task_hash":-1675223012,"spans":[{"text":"expressing","start":22,"end":32,"pattern":-1894080012}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650970480}
+{"text":"By distribution, morphology, and tryptase expression, these were identified as mast cells. Immunofluorescent analysis revealed similar immunoreactivity of mouse mast cell lines and human KU812. ","meta":{"cell_lines":["CRL-6440","MAST"],"proteins":["Tryptase"],"pmid":"PMID10607489","pattern":"1, 10"},"_input_hash":1431846571,"_task_hash":873916189,"spans":[{"text":"expression","start":42,"end":52,"pattern":283459217},{"text":"identified","start":65,"end":75,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650970528}
+{"text":"(iii) Nearly 90% of all the cDNA clones examined was p32 (SF2-associated P32, p32/TAP, and gC1q-R), and endogenous EBNA-1 proteins in the Raji cells bound to p32, a potential of which to affect localization of EBNA-1 in transfected Vero cells has been recently suggested. These results suggest that EBNA-1, which has the unique NLS containing Lys-Arg and overlapping with one of the phosphorylation domains, is recognized and transported to the nuclei by these two distinct karyopherin alpha proteins, which are differentially expressed in different cell types, implying a regulatory localization system for EBNA-1.","meta":{"cell_lines":["Raji","Vero"],"proteins":["ING2","C1QBP","EBNA1","ING2","EBNA1","EBNA1","EBNA1"],"pmid":"PMID10612665","pattern":"2"},"_input_hash":359334302,"_task_hash":439020567,"spans":[{"text":"expressed","start":527,"end":536,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650985726}
+{"text":"The expression of gankyrin was increased in all 34 hepatocellular carcinomas studied. Gankyrin induced anchorage-independent growth and tumorigenicity in NIH/3T3 cells. ","meta":{"cell_lines":["NIH 3T3"],"proteins":["PSMD10","PSMD10"],"pmid":"PMID10613832","pattern":"1"},"_input_hash":868627338,"_task_hash":-419605326,"spans":[{"text":"expression","start":4,"end":14,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1650985750}
+{"text":"To further characterize its enzymic properties, an expression construct was engineered to produce MT5-MMP as a soluble and active form by truncating its transmembrane domain. Stable expression cell lines were subsequently established from MDCK cells transfected with this construct. ","meta":{"cell_lines":["MDCK"],"proteins":["MMP24"],"pmid":"PMID10622708","pattern":"1, 1"},"_input_hash":182743175,"_task_hash":127035243,"spans":[{"text":"expression","start":51,"end":61,"pattern":283459217},{"text":"expression","start":182,"end":192,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650985775}
+{"text":"Stable expression cell lines were subsequently established from MDCK cells transfected with this construct. Unfortunately, purification of MT5-MMP from the culture media in large quantity proves to be difficult initially due to its rapid turnover via a mechanism which can be inhibited by a broad spectrum metalloproteinase inhibitor, BB94. ","meta":{"cell_lines":["MDCK"],"proteins":["MMP24"],"pmid":"PMID10622708","pattern":"1"},"_input_hash":608241805,"_task_hash":-784723303,"spans":[{"text":"expression","start":7,"end":17,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650985952}
+{"text":"In this report, we investigated whether bcl-2 inhibition of apoptosis involves regulation of TIMP expression. We have found that bcl-2 overexpression induces TIMP-1 expression in breast epithelial cell lines (MCF10A, MCF10AneoT.TG3B, and MCF-7), whereas it has no effect on TIMP-2 expression. ","meta":{"cell_lines":["MCF-10A","MCF-7"],"proteins":["BCL2","BCL2","TIMP1","TIMP2"],"pmid":"PMID10626822","pattern":"1, 0, 1, 1"},"_input_hash":-749597955,"_task_hash":-1418732181,"spans":[{"text":"expression","start":98,"end":108,"pattern":283459217},{"text":"overexpression","start":135,"end":149,"pattern":1693961019},{"text":"expression","start":165,"end":175,"pattern":283459217},{"text":"expression","start":281,"end":291,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650985995}
+{"text":"We have found that bcl-2 overexpression induces TIMP-1 expression in breast epithelial cell lines (MCF10A, MCF10AneoT.TG3B, and MCF-7), whereas it has no effect on TIMP-2 expression. We demonstrated that TIMP-1 inhibits cell death induced by hydrogen peroxide, Adriamycin, or X-ray irradiation. ","meta":{"cell_lines":["MCF-10A","MCF-7"],"proteins":["BCL2","TIMP1","TIMP2","TIMP1"],"pmid":"PMID10626822","pattern":"0, 1, 1"},"_input_hash":1199077642,"_task_hash":1135395576,"spans":[{"text":"overexpression","start":25,"end":39,"pattern":1693961019},{"text":"expression","start":55,"end":65,"pattern":283459217},{"text":"expression","start":171,"end":181,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650986002}
+{"text":"We demonstrated that TIMP-1 inhibits cell death induced by hydrogen peroxide, Adriamycin, or X-ray irradiation. In addition, TIMP-1 overexpression inhibits apoptosis after the loss of cell adhesion (anoikis) in MCF10A cells, suggesting that the antiapoptotic activity of TIMP-1 does not depend on its ability to stabilize cell-matrix interactions. ","meta":{"cell_lines":["MCF-10A"],"proteins":["TIMP1","TIMP1","TIMP1"],"pmid":"PMID10626822","pattern":"0"},"_input_hash":535024290,"_task_hash":1887967076,"spans":[{"text":"overexpression","start":132,"end":146,"pattern":1693961019}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1650986013}
+{"text":"By distribution, morphology, and tryptase expression, these were identified as mast cells. Immunofluorescent analysis revealed similar immunoreactivity of mouse mast cell lines and human KU812. ","meta":{"cell_lines":["CRL-6440","MAST"],"proteins":["Tryptase"],"pmid":"PMID10607489","score":0.1123017967},"_input_hash":1431846571,"_task_hash":390614465,"label":"GOOD_MATCH","score":0.1123017967,"priority":0.1123017967,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651063622}
+{"text":"Immunofluorescent analysis revealed similar immunoreactivity of mouse mast cell lines and human KU812. Western analysis of mouse mast cell lines revealed immunoreactive proteins, and these were distinct from previously proposed pANCA antigens (histone H1, HMG 1 and 2, and neutrophil vesicle antigens). ","meta":{"cell_lines":["CRL-6440","MAST","CRL-6440","MAST"],"proteins":["HHO1","HMGB1"],"pmid":"PMID10607489","score":0.1807682365},"_input_hash":1272214234,"_task_hash":595902731,"label":"GOOD_MATCH","score":0.1807682365,"priority":0.1807682365,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651063654}
+{"text":"We report the following: (i) Karyopherin alpha (karyopherin alpha1, hSRP1, and NPI-1), an adaptor subunit of nuclear localization signal receptors, which direct proteins to the nuclear pore, interacted with EBNA-1. (ii) EBNA-1 proteins endogenous in the B cell line Raji of Burkitt lymphoma origin bound to another adaptor protein, karyopherin alpha2 (hSRP1alpha, hRch1), interactions of which to recombinant EBNA-1 polypeptides were previously reported. ","meta":{"cell_lines":["Raji"],"proteins":["KPNA1","EBNA1","EBNA1","EBNA1"],"pmid":"PMID10612665","score":0.2957325578},"_input_hash":-1507564480,"_task_hash":-1020218066,"label":"GOOD_MATCH","score":0.2957325578,"priority":0.2957325578,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651063677}
+{"text":"(ii) EBNA-1 proteins endogenous in the B cell line Raji of Burkitt lymphoma origin bound to another adaptor protein, karyopherin alpha2 (hSRP1alpha, hRch1), interactions of which to recombinant EBNA-1 polypeptides were previously reported. (iii) Nearly 90% of all the cDNA clones examined was p32 (SF2-associated P32, p32/TAP, and gC1q-R), and endogenous EBNA-1 proteins in the Raji cells bound to p32, a potential of which to affect localization of EBNA-1 in transfected Vero cells has been recently suggested. ","meta":{"cell_lines":["Raji","Raji","Vero"],"proteins":["EBNA1","EBNA1","ING2","C1QBP","EBNA1","ING2","EBNA1"],"pmid":"PMID10612665","score":0.3071622252},"_input_hash":953657480,"_task_hash":-1937345709,"label":"GOOD_MATCH","score":0.3071622252,"priority":0.3071622252,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651063700}
+{"text":"Gankyrin induced anchorage-independent growth and tumorigenicity in NIH/3T3 cells. Gankyrin bound to the product of the retinoblastoma gene (RB1), increasing its phosphorylation and releasing the activity of the transcription factor E2F-1. ","meta":{"cell_lines":["NIH 3T3"],"proteins":["PSMD10","PSMD10","E2F1"],"pmid":"PMID10613832","score":0.0560611002},"_input_hash":-933053817,"_task_hash":1987011511,"label":"GOOD_MATCH","score":0.0560611002,"priority":0.0560611002,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651063750}
+{"text":"To further characterize its enzymic properties, an expression construct was engineered to produce MT5-MMP as a soluble and active form by truncating its transmembrane domain. Stable expression cell lines were subsequently established from MDCK cells transfected with this construct. ","meta":{"cell_lines":["MDCK"],"proteins":["MMP24"],"pmid":"PMID10622708","score":0.2130662203},"_input_hash":182743175,"_task_hash":-706373662,"label":"GOOD_MATCH","score":0.2130662203,"priority":0.2130662203,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651064114}
+{"text":"We have found that bcl-2 overexpression induces TIMP-1 expression in breast epithelial cell lines (MCF10A, MCF10AneoT.TG3B, and MCF-7), whereas it has no effect on TIMP-2 expression. We demonstrated that TIMP-1 inhibits cell death induced by hydrogen peroxide, Adriamycin, or X-ray irradiation. ","meta":{"cell_lines":["MCF-10A","MCF-7"],"proteins":["BCL2","TIMP1","TIMP2","TIMP1"],"pmid":"PMID10626822","score":0.1947982758},"_input_hash":1199077642,"_task_hash":1205870686,"label":"GOOD_MATCH","score":0.1947982758,"priority":0.1947982758,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651064124}
+{"text":"In addition, TIMP-1 overexpression inhibits apoptosis after the loss of cell adhesion (anoikis) in MCF10A cells, suggesting that the antiapoptotic activity of TIMP-1 does not depend on its ability to stabilize cell-matrix interactions. We also showed that TIMP-1 overexpression is associated with constitutive activation of focal adhesion kinase, a signaling molecule known to be critical for the cell survival pathway.","meta":{"cell_lines":["MCF-10A"],"proteins":["TIMP1","TIMP1","TIMP1"],"pmid":"PMID10626822","score":0.1058585271},"_input_hash":-1798598593,"_task_hash":1298421584,"label":"GOOD_MATCH","score":0.1058585271,"priority":0.1058585271,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651064132}
+{"text":"Caspase-3 activity was significantly increased during Tanshinone II-A treatment of both HL60 and K562 cells, whereas caspase-1 activity was not changed. These results suggest that Tanshione II-A induced HL60 and K562 cellular apoptosis that may be associated with the selective members of caspase family.","meta":{"cell_lines":["K-562","K-562"],"proteins":["CASP3","CASP1"],"pmid":"PMID10630370","pattern":"14"},"_input_hash":-1615620502,"_task_hash":-239443309,"spans":[{"text":"associated","start":248,"end":258,"pattern":-162601778}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651064187}
+{"text":"In this study, we investigated the efficacy of a tumor vaccine composed of inactivated autologous cells transfected with two plasmid vectors encoding a mutant membrane-bound murine granulocyte-macrophage colony-stimulating factor (MuGM-CSF) and murine interferon-gamma (MuIFN-gamma). Expression of both cytokines as cell surface ligands on the highly metastatic D122 clone of Lewis lung carcinoma led to abrogation of their tumorigenicity and metastatic phenotype. ","meta":{"cell_lines":["D122"],"proteins":["CSF2","CSF2"],"pmid":"PMID10638708","pattern":"1"},"_input_hash":1051345748,"_task_hash":2088375497,"spans":[{"text":"Expression","start":284,"end":294,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651064208}
+{"text":"Expression of both cytokines as cell surface ligands on the highly metastatic D122 clone of Lewis lung carcinoma led to abrogation of their tumorigenicity and metastatic phenotype. More importantly, vaccination with irradiated tumor cells expressing the membrane-bound GM-CSF and IFN-gamma induced a cytotoxic T lymphocyte (CTL) response that protected syngeneic mice against a subsequent challenge with D122 cells as a primary tumor in preimmunized mice as well as against lung metastasis developing after surgical removal of the primary tumor in naive mice. ","meta":{"cell_lines":["D122","D122"],"proteins":["CSF2","IFNG"],"pmid":"PMID10638708","pattern":"1, 4"},"_input_hash":917129520,"_task_hash":-1140206550,"spans":[{"text":"Expression","start":0,"end":10,"pattern":283459217},{"text":"expressing","start":239,"end":249,"pattern":-1894080012}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137133}
+{"text":"More importantly, vaccination with irradiated tumor cells expressing the membrane-bound GM-CSF and IFN-gamma induced a cytotoxic T lymphocyte (CTL) response that protected syngeneic mice against a subsequent challenge with D122 cells as a primary tumor in preimmunized mice as well as against lung metastasis developing after surgical removal of the primary tumor in naive mice. Autologous cells expressing the membrane-bound GM-CSF and IFN-gamma exhibited comparable efficacy as an antimetastatic vaccine to a vaccine composed of transfectants expressing wild-type secreted cytokine molecules. ","meta":{"cell_lines":["D122"],"proteins":["CSF2","IFNG","CSF2","IFNG"],"pmid":"PMID10638708","pattern":"4, 4, 4, 9"},"_input_hash":604200332,"_task_hash":1116264182,"spans":[{"text":"expressing","start":58,"end":68,"pattern":-1894080012},{"text":"expressing","start":396,"end":406,"pattern":-1894080012},{"text":"expressing","start":545,"end":555,"pattern":-1894080012},{"text":"secreted","start":566,"end":574,"pattern":1414062687}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137312}
+{"text":"The SH2-containing protein tyrosine phosphatase1 (SHP-1) is important for signaling from immune receptors. To investigate the role of SHP-1 in mast cells we overexpressed the wild-type and the phosphatase-inactive forms of SHP-1 in rat basophilic leukemia 2H3 (RBL-2H3) mast cell line. ","meta":{"cell_lines":["MOG-G-RAT","RBL-2H3"],"proteins":["PTPN6","PTPN6","PTPN6"],"pmid":"PMID10640770","pattern":"3"},"_input_hash":-418705839,"_task_hash":-1404606748,"spans":[{"text":"overexpressed","start":157,"end":170,"pattern":-1415080216}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137368}
+{"text":"To investigate the role of SHP-1 in mast cells we overexpressed the wild-type and the phosphatase-inactive forms of SHP-1 in rat basophilic leukemia 2H3 (RBL-2H3) mast cell line. The phosphatase-inactive SHP-1 (C453S or D419A) retains its ability to bind tyrosine phosphorylated substrates and thereby competes with the endogenous wild-type enzyme. ","meta":{"cell_lines":["MOG-G-RAT","RBL-2H3"],"proteins":["PTPN6","PTPN6","PTPN6"],"pmid":"PMID10640770","pattern":"3"},"_input_hash":-1298507479,"_task_hash":-1780488243,"spans":[{"text":"overexpressed","start":50,"end":63,"pattern":-1415080216}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137373}
+{"text":"However, receptor-induced histamine release in the cells expressing either wild-type or dominant negative SHP-1 was similar to that in the parental control cells. In contrast, compared with the parental RBL-2H3 cells, FcepsilonRI-induced c-Jun N-terminal kinase phosphorylation and the level of TNF-alpha mRNA was increased in the cells overexpressing wild-type SHP-1 whereas the dominant negative SHP-1 had the opposite effect. ","meta":{"cell_lines":["RBL-2H3"],"proteins":["PTPN6","PTPN6","PTPN6"],"pmid":"PMID10640770","pattern":"4, 5"},"_input_hash":1109458991,"_task_hash":1675716232,"spans":[{"text":"expressing","start":57,"end":67,"pattern":-1894080012},{"text":"overexpressing","start":337,"end":351,"pattern":1223495235}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137715}
+{"text":"In contrast, compared with the parental RBL-2H3 cells, FcepsilonRI-induced c-Jun N-terminal kinase phosphorylation and the level of TNF-alpha mRNA was increased in the cells overexpressing wild-type SHP-1 whereas the dominant negative SHP-1 had the opposite effect. The substrate-trapping mutant SHP1/D419A identified pp25 and pp30 as two major potential substrates of SHP-1 in RBL-2H3 cells. ","meta":{"cell_lines":["RBL-2H3","RBL-2H3"],"proteins":["PTPN6","PTPN6","PTPN6","HSPB11","PTPN6"],"pmid":"PMID10640770","pattern":"5, 10"},"_input_hash":355824852,"_task_hash":2142826836,"spans":[{"text":"overexpressing","start":174,"end":188,"pattern":1223495235},{"text":"identified","start":307,"end":317,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137724}
+{"text":"The substrate-trapping mutant SHP1/D419A identified pp25 and pp30 as two major potential substrates of SHP-1 in RBL-2H3 cells. Therefore, SHP-1 may play a role in allergy and inflammation by regulating mast cell cytokine production.","meta":{"cell_lines":["RBL-2H3"],"proteins":["PTPN6","HSPB11","PTPN6","PTPN6"],"pmid":"PMID10640770","pattern":"10"},"_input_hash":-209475985,"_task_hash":1413657923,"spans":[{"text":"identified","start":41,"end":51,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137739}
+{"text":"Seprase is a homodimeric 170-kDa integral membrane gelatinase that is related to the ectoenzyme dipeptidyl peptidase IV. We have identified an alternatively spliced seprase messenger from the human melanoma cell line LOX that encodes a novel truncated isoform, seprase-s. ","meta":{"cell_lines":["LOX-IMVI"],"proteins":["FAP","DPP4"],"pmid":"PMID10644713","pattern":"11, 10"},"_input_hash":675936996,"_task_hash":-1796585988,"spans":[{"text":"related","start":70,"end":77,"pattern":-1745510188},{"text":"identified","start":129,"end":139,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651137784}
+{"text":"We have identified an alternatively spliced seprase messenger from the human melanoma cell line LOX that encodes a novel truncated isoform, seprase-s. The splice variant mRNA is generated by an out-of-frame deletion of a 1223-base pair exonic region that encodes part of the cytoplasmic tail, transmembrane, and the membrane proximal-central regions of the extracellular domain (Val(5) through Ser(412)) of the seprase 97-kDa subunit (seprase-l). ","meta":{"cell_lines":["LOX-IMVI"],"proteins":["FAP","FAP"],"pmid":"PMID10644713","pattern":"10"},"_input_hash":-1658455984,"_task_hash":806392338,"spans":[{"text":"identified","start":8,"end":18,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651137792}
+{"text":"While SLP-76 appears to couple the TCR with downstream signals, SLAP-130 may play a negative regulatory role in T cell activation. In this study, we demonstrate that consistent with its ability to abrogate the SLP-76 augmentation of TCR-induced activation of the NFAT/AP1 region of the interleukin-2 promoter, overexpression of SLAP-130 also interferes with the rescue of signaling in SLP-76-deficient Jurkat cells in co-transfection experiments. ","meta":{"cell_lines":["Jurkat"],"proteins":["LCP2","FYB1","LCP2","JUN","FYB1"],"pmid":"PMID10671560","pattern":"0"},"_input_hash":854328574,"_task_hash":-703034974,"spans":[{"text":"overexpression","start":310,"end":324,"pattern":1693961019}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137872}
+{"text":"In this study, we demonstrate that consistent with its ability to abrogate the SLP-76 augmentation of TCR-induced activation of the NFAT/AP1 region of the interleukin-2 promoter, overexpression of SLAP-130 also interferes with the rescue of signaling in SLP-76-deficient Jurkat cells in co-transfection experiments. The effect of SLAP-130 on SLP-76 function is specific for regulating TCR-induced ERK activation, but not phospholipase Cgamma 1 phosphorylation. ","meta":{"cell_lines":["Jurkat"],"proteins":["LCP2","JUN","FYB1","FYB1","LCP2","EPHB2"],"pmid":"PMID10671560","pattern":"0"},"_input_hash":188693330,"_task_hash":-1506404076,"spans":[{"text":"overexpression","start":179,"end":193,"pattern":1693961019}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137889}
+{"text":"Human T lymphocytes (Jurkat) that are made deficient in IP(3)R do not generate Ca(2+) signals in response to T cell receptor stimulation, fail to translocate the nuclear factor for activated T cells to the nucleus, and are remarkably resistant to induction of apoptosis with CD95 (Fas), dexamethasone, gamma irradiation, and T cell receptor stimulation using anti-CD3 antibody. Expression of constitutively active calcineurin A in IP(3)R-deficient T cells restored nuclear factor for activated T cells translocation to the nucleus and dephosphorylation of Bad and rendered the cells sensitive to apoptotic inducers. ","meta":{"cell_lines":["Jurkat"],"proteins":["CD3G","FASN","CD3G","CD3E"],"pmid":"PMID10692444","pattern":"1"},"_input_hash":330577792,"_task_hash":1622573969,"spans":[{"text":"Expression","start":378,"end":388,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651137941}
+{"text":"GTP and the different catechins had no effect on pancreatic elastase, suggesting that the effects of these molecules on MMP activities are specific. Furthermore, in vitro activation of proMMP-2 secreted from the glioblastomas cell line U-87 by the lectin concanavalin A was completely inhibited by GTP and specifically by EGCG. ","meta":{"cell_lines":["U-87MG ATCC","U-87MG Uppsala"],"proteins":["CELA3B","Concanavalin-A","LECA"],"pmid":"PMID10719174","pattern":"9"},"_input_hash":-2003222689,"_task_hash":2045841154,"spans":[{"text":"secreted","start":194,"end":202,"pattern":1414062687}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651138054}
+{"text":"Furthermore, in vitro activation of proMMP-2 secreted from the glioblastomas cell line U-87 by the lectin concanavalin A was completely inhibited by GTP and specifically by EGCG. These results indicate that catechins from green tea inhibit MMP activities and proMMP-2 activation.","meta":{"cell_lines":["U-87MG ATCC","U-87MG Uppsala"],"proteins":["Concanavalin-A","LECA"],"pmid":"PMID10719174","pattern":"9"},"_input_hash":1023165064,"_task_hash":827566540,"spans":[{"text":"secreted","start":45,"end":53,"pattern":1414062687}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651138083}
+{"text":"It has been found previously that irradiated, IL-2 gene-modified plasmacytoma (X63-m-IL-2) vaccines are more efficient in the therapy of the parental (X63-Ag8.653) plasmacytoma than live plasmacytoma vaccines. In this communication, we have demonstrated that irradiation of murine IL-2-producing plasmacytoma vaccines resulted in upregulation of CD80 molecule expression and IL-2 production. ","meta":{"cell_lines":["P3X63Ag8","P3X63Ag8"],"proteins":["CD80","IL2"],"pmid":"PMID10730877","pattern":"1"},"_input_hash":1073464598,"_task_hash":-2108078521,"spans":[{"text":"expression","start":360,"end":370,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651138726}
+{"text":"The expression of MHC class I antigens was not altered. The upregulation of the CD80 membrane molecule expression in X63-m-IL-2 cells was higher after irradiation with 150 Gy than after irradiation with 50 Gy. ","meta":{"cell_lines":["P3X63Ag8"],"proteins":["CD80"],"pmid":"PMID10730877","pattern":"1, 1"},"_input_hash":-283199325,"_task_hash":-1689645003,"spans":[{"text":"expression","start":4,"end":14,"pattern":283459217},{"text":"expression","start":103,"end":113,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651138752}
+{"text":"The upregulation of the CD80 membrane molecule expression in X63-m-IL-2 cells was higher after irradiation with 150 Gy than after irradiation with 50 Gy. Comparable upregulation of the CD80 molecule expression has also been demonstrated after irradiation of the parental murine X63-Ag8.653 plasmacytoma cells. ","meta":{"cell_lines":["P3X63Ag8","P3X63Ag8"],"proteins":["CD80","CD80"],"pmid":"PMID10730877","pattern":"1, 1"},"_input_hash":-1948587427,"_task_hash":805106442,"spans":[{"text":"expression","start":47,"end":57,"pattern":283459217},{"text":"expression","start":199,"end":209,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651138759}
+{"text":"Rap1 induced changes in the conformation and affinity of LFA-1 and, interestingly, caused marked LFA-1/ICAM-1-mediated cell aggregation. Furthermore, a dominant negative form of Rap1 (Rap1N17) inhibited T-cell receptor-mediated LFA-1 activation in Jurkat T cells and LFA-1/ICAM-1-dependent cell aggregation upon differentiation of HL-60 cells into macrophages, suggesting that Rap1 is critically involved in physiological processes. ","meta":{"cell_lines":["Jurkat","HL-60"],"proteins":["RAP1A","RAP1A","RAP1A"],"pmid":"PMID10688643","score":0.0776772872},"_input_hash":1151025063,"_task_hash":-1691015065,"label":"GOOD_MATCH","score":0.0776772872,"priority":0.0776772872,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651138875}
+{"text":"Furthermore, a dominant negative form of Rap1 (Rap1N17) inhibited T-cell receptor-mediated LFA-1 activation in Jurkat T cells and LFA-1/ICAM-1-dependent cell aggregation upon differentiation of HL-60 cells into macrophages, suggesting that Rap1 is critically involved in physiological processes. These unique functions of Rap1 in controlling cellular adhesion through LFA-1 suggest a pivotal role as an immunological regulator.","meta":{"cell_lines":["Jurkat","HL-60"],"proteins":["RAP1A","RAP1A","RAP1A"],"pmid":"PMID10688643","score":0.0860022753},"_input_hash":-2120647838,"_task_hash":701699053,"label":"GOOD_MATCH","score":0.0860022753,"priority":0.0860022753,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651138875}
+{"text":"Human T lymphocytes (Jurkat) that are made deficient in IP(3)R do not generate Ca(2+) signals in response to T cell receptor stimulation, fail to translocate the nuclear factor for activated T cells to the nucleus, and are remarkably resistant to induction of apoptosis with CD95 (Fas), dexamethasone, gamma irradiation, and T cell receptor stimulation using anti-CD3 antibody. Expression of constitutively active calcineurin A in IP(3)R-deficient T cells restored nuclear factor for activated T cells translocation to the nucleus and dephosphorylation of Bad and rendered the cells sensitive to apoptotic inducers. ","meta":{"cell_lines":["Jurkat"],"proteins":["CD3G","FASN","CD3G","CD3E"],"pmid":"PMID10692444","score":0.1022892892},"_input_hash":330577792,"_task_hash":1170312364,"label":"GOOD_MATCH","score":0.1022892892,"priority":0.1022892892,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651138900}
+{"text":"GTP and the different catechins had no effect on pancreatic elastase, suggesting that the effects of these molecules on MMP activities are specific. Furthermore, in vitro activation of proMMP-2 secreted from the glioblastomas cell line U-87 by the lectin concanavalin A was completely inhibited by GTP and specifically by EGCG. ","meta":{"cell_lines":["U-87MG ATCC","U-87MG Uppsala"],"proteins":["CELA3B","Concanavalin-A","LECA"],"pmid":"PMID10719174","score":0.4152826667},"_input_hash":-2003222689,"_task_hash":202715054,"label":"GOOD_MATCH","score":0.4152826667,"priority":0.4152826667,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651138941}
+{"text":"It has been found previously that irradiated, IL-2 gene-modified plasmacytoma (X63-m-IL-2) vaccines are more efficient in the therapy of the parental (X63-Ag8.653) plasmacytoma than live plasmacytoma vaccines. In this communication, we have demonstrated that irradiation of murine IL-2-producing plasmacytoma vaccines resulted in upregulation of CD80 molecule expression and IL-2 production. ","meta":{"cell_lines":["P3X63Ag8","P3X63Ag8"],"proteins":["CD80","IL2"],"pmid":"PMID10730877","score":0.2474813461},"_input_hash":1073464598,"_task_hash":-841526717,"label":"GOOD_MATCH","score":0.2474813461,"priority":0.2474813461,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651138981}
+{"text":"The upregulation of the CD80 membrane molecule expression in X63-m-IL-2 cells was higher after irradiation with 150 Gy than after irradiation with 50 Gy. Comparable upregulation of the CD80 molecule expression has also been demonstrated after irradiation of the parental murine X63-Ag8.653 plasmacytoma cells. ","meta":{"cell_lines":["P3X63Ag8","P3X63Ag8"],"proteins":["CD80","CD80"],"pmid":"PMID10730877","score":0.1109044924},"_input_hash":-1948587427,"_task_hash":-1060881665,"label":"GOOD_MATCH","score":0.1109044924,"priority":0.1109044924,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651138991}
+{"text":"Comparable upregulation of the CD80 molecule expression has also been demonstrated after irradiation of the parental murine X63-Ag8.653 plasmacytoma cells. The results indicate that upregulation of the CD80 molecule expression and enhanced IL-2 production in irradiated X63-m-IL-2 cells was responsible for the higher therapeutic effectiveness of the irradiated plasmacytoma vaccine.","meta":{"cell_lines":["P3X63Ag8","P3X63Ag8"],"proteins":["CD80","CD80","IL2"],"pmid":"PMID10730877","score":0.2952681184},"_input_hash":1387381874,"_task_hash":-523488624,"label":"GOOD_MATCH","score":0.2952681184,"priority":0.2952681184,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651139004}
+{"text":"Comparable upregulation of the CD80 molecule expression has also been demonstrated after irradiation of the parental murine X63-Ag8.653 plasmacytoma cells. The results indicate that upregulation of the CD80 molecule expression and enhanced IL-2 production in irradiated X63-m-IL-2 cells was responsible for the higher therapeutic effectiveness of the irradiated plasmacytoma vaccine.","meta":{"cell_lines":["P3X63Ag8","P3X63Ag8"],"proteins":["CD80","CD80","IL2"],"pmid":"PMID10730877","pattern":"1, 1"},"_input_hash":1387381874,"_task_hash":-375432670,"spans":[{"text":"expression","start":45,"end":55,"pattern":283459217},{"text":"expression","start":216,"end":226,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139011}
+{"text":"The results indicate that upregulation of the CD80 molecule expression and enhanced IL-2 production in irradiated X63-m-IL-2 cells was responsible for the higher therapeutic effectiveness of the irradiated plasmacytoma vaccine.","meta":{"cell_lines":["P3X63Ag8"],"proteins":["CD80","IL2"],"pmid":"PMID10730877","pattern":"1"},"_input_hash":32611126,"_task_hash":-2078733206,"spans":[{"text":"expression","start":60,"end":70,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139053}
+{"text":"Paclitaxel induces apoptosis in lung cancer cell lines, as assessed by a consistent increase in caspase-3 activity, DNA laddering, and characteristic morphologic changes. Paclitaxel-induced apoptosis in human lung cancer cells is associated with caspase-3 activation but is not Fas dependent.","meta":{"cell_lines":["PAE-iPS-4"],"proteins":["FASN"],"pmid":"PMID10733772","pattern":"14"},"_input_hash":1941060178,"_task_hash":-505741459,"spans":[{"text":"associated","start":230,"end":240,"pattern":-162601778}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139103}
+{"text":"As the synthesis of PI(4,5)P(2) has been suggested to be affected by Rho proteins, we investigated whether Rho-kinase is involved in the control of PI(4,5)P(2) levels. Overexpression of RhoA in HEK-293 cells increased phosphatidylinositol 4-phosphate (PI4P) 5-kinase activity and concomitantly enhanced cellular PI(4,5)P(2) levels, whereas overexpression of the Rho-inactivating C3 transferase decreased both PI4P 5-kinase activity and PI(4,5)P(2) levels. ","meta":{"cell_lines":["HEK293"],"proteins":["RHOA"],"pmid":"PMID10744700","pattern":"0, 0"},"_input_hash":-1074578262,"_task_hash":1350790291,"spans":[{"text":"Overexpression","start":168,"end":182,"pattern":1693961019},{"text":"overexpression","start":340,"end":354,"pattern":1693961019}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139113}
+{"text":"Overexpression of RhoA in HEK-293 cells increased phosphatidylinositol 4-phosphate (PI4P) 5-kinase activity and concomitantly enhanced cellular PI(4,5)P(2) levels, whereas overexpression of the Rho-inactivating C3 transferase decreased both PI4P 5-kinase activity and PI(4,5)P(2) levels. These effects of RhoA could be mimicked by overexpression of wild-type Rho-kinase and of the constitutively active catalytic domain of Rho-kinase, Rho-kinase-CAT. ","meta":{"cell_lines":["HEK293"],"proteins":["RHOA","RHOA"],"pmid":"PMID10744700","pattern":"0, 0, 0"},"_input_hash":-266266907,"_task_hash":1540504781,"spans":[{"text":"Overexpression","start":0,"end":14,"pattern":1693961019},{"text":"overexpression","start":172,"end":186,"pattern":1693961019},{"text":"overexpression","start":331,"end":345,"pattern":1693961019}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139115}
+{"text":"The nude locus encodes Whn, a transcription factor of the forkhead/winged-helix class. Expression of Whn in HeLa cells induced expression of human hair keratin genes Ha3-II and Hb5. ","meta":{"cell_lines":["HeLa"],"proteins":["FOXN1","FOXN1"],"pmid":"PMID10767081","pattern":"1, 1"},"_input_hash":576543888,"_task_hash":105281866,"spans":[{"text":"Expression","start":87,"end":97,"pattern":283459217},{"text":"expression","start":127,"end":137,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651139187}
+{"text":"Expression of Whn in HeLa cells induced expression of human hair keratin genes Ha3-II and Hb5. Correspondingly, in nude mice, which are homozygous for a loss-of-function mutation of Whn, expression of mouse mHa3 and mHb5 hair keratin genes is severely reduced. ","meta":{"cell_lines":["HeLa"],"proteins":["FOXN1","FOXN1"],"pmid":"PMID10767081","pattern":"1, 1, 1"},"_input_hash":668001806,"_task_hash":-369916838,"spans":[{"text":"Expression","start":0,"end":10,"pattern":283459217},{"text":"expression","start":40,"end":50,"pattern":283459217},{"text":"expression","start":187,"end":197,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651139202}
+{"text":"Characterization of a previously identified nude allele, nu(Y), revealed a mis-sense mutation (R320C) in the DNA binding domain of Whn. This mutant protein is unable to activate hair keratin gene expression in HeLa cells. ","meta":{"cell_lines":["HeLa"],"proteins":["FOXN1"],"pmid":"PMID10767081","pattern":"10, 1"},"_input_hash":1325453222,"_task_hash":1396030738,"spans":[{"text":"identified","start":33,"end":43,"pattern":817427073},{"text":"expression","start":196,"end":206,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139222}
+{"text":"This mutant protein is unable to activate hair keratin gene expression in HeLa cells. When the Whn transcription factor was expressed in two parts, one containing the N-terminal DNA binding domain and the other the C-terminal activation domain, no activation of hair keratin genes in HeLa cells was observed. ","meta":{"cell_lines":["HeLa","HeLa"],"proteins":["FOXN1"],"pmid":"PMID10767081","pattern":"1, 2"},"_input_hash":-505218398,"_task_hash":333879073,"spans":[{"text":"expression","start":60,"end":70,"pattern":283459217},{"text":"expressed","start":124,"end":133,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139240}
+{"text":"When the Whn transcription factor was expressed in two parts, one containing the N-terminal DNA binding domain and the other the C-terminal activation domain, no activation of hair keratin genes in HeLa cells was observed. ","meta":{"cell_lines":["HeLa"],"proteins":["FOXN1"],"pmid":"PMID10767081","pattern":"2"},"_input_hash":-259463430,"_task_hash":-502492394,"spans":[{"text":"expressed","start":38,"end":47,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651139247}
+{"text":"We constructed Adp14, an adenoviral vector carrying human p14(ARF) complementary DNA, and used it to transfect human mesothelioma cell lines H28, H513, H2052, and MSTO-211H. Overexpression of p14(ARF) led to increased amounts of p53 and the p21(WAF) proteins and dephosphorylation of the retinoblastoma protein. ","meta":{"cell_lines":["NCI-H28","NCI-H513","NCI-H2052","MSTO-211H"],"proteins":["TP53","CDKN1A"],"pmid":"PMID10772681","pattern":"0"},"_input_hash":-1898373985,"_task_hash":-1037706881,"spans":[{"text":"Overexpression","start":174,"end":188,"pattern":1693961019}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139251}
+{"text":"In the present study, we expressed human topo I in HeLa cells by fusing it to enhanced green fluorescent protein (EGFP). The EGFP-topo I fusion protein is functionally active in that it relaxes supercoiled plasmid DNA; forms complexes with DNA, as revealed by band depletion assays; and increases the sensitivity of cells to topo I inhibitors such as topotecan, as determined by growth inhibition assays. ","meta":{"cell_lines":["HeLa"],"proteins":["GFP"],"pmid":"PMID10772820","pattern":"2"},"_input_hash":-693735057,"_task_hash":-1338855539,"spans":[{"text":"expressed","start":25,"end":34,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139257}
+{"text":"hPRP4 is expressed in a variety of human tissues with the highest expression in the brain, lung and liver. In this paper, we characterize the activation of hPRP4 in COS-7 cells and show that hPRP4 also possesses a transcription factor activation function. ","meta":{"cell_lines":["COS-7"],"proteins":["PRPF4","PRPF4","PRPF4"],"pmid":"PMID10799319","pattern":"2, 1"},"_input_hash":1791503850,"_task_hash":966546297,"spans":[{"text":"expressed","start":9,"end":18,"pattern":784610258},{"text":"expression","start":66,"end":76,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651139297}
+{"text":"In this study we have examined the phosphorylation of the myc-tagged wild-type 5-HT3A receptor subunits from guinea-pig expressed in HEK293 cells (human embryonic kidney). ","meta":{"cell_lines":["HEK293"],"proteins":["MYC","HTR3A"],"pmid":"PMID10800772","pattern":"2"},"_input_hash":-1082374121,"_task_hash":-1851037776,"spans":[{"text":"expressed","start":120,"end":129,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651139355}
+{"text":"One of these monoclonal antibodies (designated clone 3, CL3) recognized 10 amino acids (GCSGKLICTT) within the immunodominant region (cluster I) of the transmembrane envelope glycoprotein gp41 and neutralized infection of target cells with different laboratory isolates. Because the epitope recognized by CL3 has two cysteine residues that could potentially produce a disulfide loop in gp41, we analyzed binding of our monoclonal antibody to the cyclic and linear motif of the peptide sequence IWGCSGKLICTTAVP (residues 600-614). ","meta":{"cell_lines":["P3-CL","P3-CL"],"proteins":["GP"],"pmid":"PMID10772986","score":0.1064354554},"_input_hash":-2125254027,"_task_hash":1910727990,"label":"GOOD_MATCH","score":0.1064354554,"priority":0.1064354554,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651139415}
+{"text":"Because the epitope recognized by CL3 has two cysteine residues that could potentially produce a disulfide loop in gp41, we analyzed binding of our monoclonal antibody to the cyclic and linear motif of the peptide sequence IWGCSGKLICTTAVP (residues 600-614). The CL3 antibody did not bind to the synthetic cyclic peptide but did recognize the linear form. ","meta":{"cell_lines":["P3-CL"],"proteins":["COLEC12"],"pmid":"PMID10772986","score":0.1709778607},"_input_hash":-1904964460,"_task_hash":-1872546683,"label":"GOOD_MATCH","score":0.1709778607,"priority":0.1709778607,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651139422}
+{"text":"We found that Cr(VI) caused up to 20% of HLF cells to undergo apoptosis, and documented apoptotic morphology and the phagocytosis of apoptotic bodies by neighboring cells. P53 levels increased 4- to 6-fold in chromium-treated cells. ","meta":{"cell_lines":["HLF"],"proteins":["TP53"],"pmid":"PMID10788560","score":0.2111702859},"_input_hash":167614858,"_task_hash":-357899287,"label":"GOOD_MATCH","score":0.2111702859,"priority":0.2111702859,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651139448}
+{"text":"hPRP4 is expressed in a variety of human tissues with the highest expression in the brain, lung and liver. In this paper, we characterize the activation of hPRP4 in COS-7 cells and show that hPRP4 also possesses a transcription factor activation function. ","meta":{"cell_lines":["COS-7"],"proteins":["PRPF4","PRPF4","PRPF4"],"pmid":"PMID10799319","score":0.170904696},"_input_hash":1791503850,"_task_hash":-1532297750,"label":"GOOD_MATCH","score":0.170904696,"priority":0.170904696,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651139464}
+{"text":"In this study we have examined the phosphorylation of the myc-tagged wild-type 5-HT3A receptor subunits from guinea-pig expressed in HEK293 cells (human embryonic kidney). ","meta":{"cell_lines":["HEK293"],"proteins":["MYC","HTR3A"],"pmid":"PMID10800772","score":0.2734582722},"_input_hash":-1082374121,"_task_hash":132889750,"label":"GOOD_MATCH","score":0.2734582722,"priority":0.2734582722,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651139490}
+{"text":"Dot-blot analysis of multiple tissue RNA revealed that hMSH2 and hEXO1 are coexpressed at high levels in fetal liver as well as in adult testis and thymus. Northern blot analysis also revealed that hEXO1/HEX1 is highly expressed in several liver cancer cell lines as well as in colon and pancreas adenocarcinomas, but not in the corresponding non-neoplastic tissue.","meta":{"cell_lines":["PAE-iPS-4"],"proteins":["MSH2","EXO1"],"pmid":"PMID10856833","pattern":"2"},"_input_hash":-226852442,"_task_hash":817266912,"spans":[{"text":"expressed","start":219,"end":228,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651140993}
+{"text":"Here we provide data that human prostate cancer cell lines express the platelet-type isoform of 12-LOX at both the mRNA and protein levels, and immunohistochemistry revealed 12-LOX expression in human prostate tumors. The enzyme was localized to the plasma membrane, cytoplasmic organelles and nucleus in non-metastatic cells (PC-3 nm) and to the cytoskeleton and nucleus in metastatic cells (DU-145). ","meta":{"cell_lines":["PC-3","PC-3 [Human lung carcinoma]","DU145"],"proteins":["ALOX15","ALOX15"],"pmid":"PMID10861450","pattern":"16, 1"},"_input_hash":112879626,"_task_hash":660278086,"spans":[{"text":"express","start":59,"end":66,"pattern":-2002329810},{"text":"expression","start":181,"end":191,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651141015}
+{"text":"The enzyme was localized to the plasma membrane, cytoplasmic organelles and nucleus in non-metastatic cells (PC-3 nm) and to the cytoskeleton and nucleus in metastatic cells (DU-145). After orthotopic/intraprostatic injection of tumor cells into SCID mice, the metastatic prostate carcinoma cells (DU-145) expressed 12-LOX at a significantly higher level compared with the non-metastatic counterparts, PC-3nm. ","meta":{"cell_lines":["PC-3","PC-3 [Human lung carcinoma]","DU145","DU145","PC-3","PC-3 [Human lung carcinoma]"],"proteins":["ALOX15"],"pmid":"PMID10861450","pattern":"2"},"_input_hash":-365867577,"_task_hash":2144083927,"spans":[{"text":"expressed","start":306,"end":315,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651141058}
+{"text":"Dot-blot analysis of multiple tissue RNA revealed that hMSH2 and hEXO1 are coexpressed at high levels in fetal liver as well as in adult testis and thymus. Northern blot analysis also revealed that hEXO1/HEX1 is highly expressed in several liver cancer cell lines as well as in colon and pancreas adenocarcinomas, but not in the corresponding non-neoplastic tissue.","meta":{"cell_lines":["PAE-iPS-4"],"proteins":["MSH2","EXO1"],"pmid":"PMID10856833","pattern":"2"},"_input_hash":-226852442,"_task_hash":817266912,"spans":[{"text":"expressed","start":219,"end":228,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651139970}
+{"text":"Here we provide data that human prostate cancer cell lines express the platelet-type isoform of 12-LOX at both the mRNA and protein levels, and immunohistochemistry revealed 12-LOX expression in human prostate tumors. The enzyme was localized to the plasma membrane, cytoplasmic organelles and nucleus in non-metastatic cells (PC-3 nm) and to the cytoskeleton and nucleus in metastatic cells (DU-145). ","meta":{"cell_lines":["PC-3","PC-3 [Human lung carcinoma]","DU145"],"proteins":["ALOX15","ALOX15"],"pmid":"PMID10861450","pattern":"16, 1"},"_input_hash":112879626,"_task_hash":660278086,"spans":[{"text":"express","start":59,"end":66,"pattern":-2002329810},{"text":"expression","start":181,"end":191,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651140010}
+{"text":"The enzyme was localized to the plasma membrane, cytoplasmic organelles and nucleus in non-metastatic cells (PC-3 nm) and to the cytoskeleton and nucleus in metastatic cells (DU-145). After orthotopic/intraprostatic injection of tumor cells into SCID mice, the metastatic prostate carcinoma cells (DU-145) expressed 12-LOX at a significantly higher level compared with the non-metastatic counterparts, PC-3nm. ","meta":{"cell_lines":["PC-3","PC-3 [Human lung carcinoma]","DU145","DU145","PC-3","PC-3 [Human lung carcinoma]"],"proteins":["ALOX15"],"pmid":"PMID10861450","pattern":"2"},"_input_hash":-365867577,"_task_hash":2144083927,"spans":[{"text":"expressed","start":306,"end":315,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651140686}
+{"text":"After orthotopic/intraprostatic injection of tumor cells into SCID mice, the metastatic prostate carcinoma cells (DU-145) expressed 12-LOX at a significantly higher level compared with the non-metastatic counterparts, PC-3nm. The functional involvement of 12-LOX in the metastatic process was demonstrated when DU-145 cells were pretreated in vitro with the 12-LOX inhibitors N-benzyl-N-hydroxy-5-phenylpentamide (BHPP) or baicalein, the use of which significantly inhibited lung colonization. ","meta":{"cell_lines":["DU145","PC-3","PC-3 [Human lung carcinoma]","DU145"],"proteins":["ALOX15","ALOX15"],"pmid":"PMID10861450","pattern":"2"},"_input_hash":280641243,"_task_hash":-825135973,"spans":[{"text":"expressed","start":122,"end":131,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651140761}
+{"text":"Therefore, we assayed beta43' in dissociated rat sympathetic ganglia cultures, which contain nAchR-positive neurons as well as nAchR-negative non-neuronal cells. Reporters controlled by the alpha3 promoter and beta43' were expressed in a neuron-selective manner; greater than 90% and up to 100% of luciferase expression was detected in neurons. ","meta":{"cell_lines":["MOG-G-RAT"],"proteins":["Luciferin 4-monooxygenase"],"pmid":"PMID10878018","pattern":"2, 1, 6"},"_input_hash":-1320395279,"_task_hash":610245101,"spans":[{"text":"expressed","start":223,"end":232,"pattern":784610258},{"text":"expression","start":309,"end":319,"pattern":283459217},{"text":"detected","start":324,"end":332,"pattern":-2284118}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651140976}
+{"text":"CEA-related cell adhesion molecule 1 (CEACAM1) exhibits angiogenic properties in in vitro and in vivo angiogenesis assays. CEACAM1 purified from granulocytes and endothelial cell media as well as recombinant CEACAM1 expressed in HEK293 cells stimulate proliferation, chemotaxis, and capillary-like tube formation of human microvascular endothelial cells. ","meta":{"cell_lines":["HEK293"],"proteins":["CEACAM5","CADM1","CEACAM1","CEACAM1","CEACAM1"],"pmid":"PMID10882072","pattern":"2"},"_input_hash":-1260818660,"_task_hash":1070397647,"spans":[{"text":"expressed","start":216,"end":225,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651141075}
+{"text":"CEACAM1 purified from granulocytes and endothelial cell media as well as recombinant CEACAM1 expressed in HEK293 cells stimulate proliferation, chemotaxis, and capillary-like tube formation of human microvascular endothelial cells. They increase vascularization of chick chorioallantoic membrane and potentiate the effects of vascular endothelial growth factor (VEGF)165. ","meta":{"cell_lines":["HEK293"],"proteins":["CEACAM1","CEACAM1"],"pmid":"PMID10882072","pattern":"2"},"_input_hash":-995717666,"_task_hash":870123962,"spans":[{"text":"expressed","start":93,"end":102,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651141079}
+{"text":"Dorsal root ganglia (DRGs) do not regenerate in the regrowing tail, which is innervated by DRGs rostral to the amputation. With Nissl staining, NADPH-diaphorase histochemistry and nitric oxide synthase (NOS) immunohistochemistry, we investigated NOS expression and its relationship with structural changes in DRG neurons of caudotomized lizards. ","meta":{"cell_lines":["DrG"],"proteins":["NOS","NOS2","NOS2"],"pmid":"PMID10882786","pattern":"1"},"_input_hash":792827744,"_task_hash":1985965791,"spans":[{"text":"expression","start":250,"end":260,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651141092}
+{"text":"With Nissl staining, NADPH-diaphorase histochemistry and nitric oxide synthase (NOS) immunohistochemistry, we investigated NOS expression and its relationship with structural changes in DRG neurons of caudotomized lizards. First, by horseradish peroxidase retrograde tracing we here provided evidence that the sensory innervation of the regenerated tail derives only from the three pairs of DRGs rostral to the amputation plane. ","meta":{"cell_lines":["DrG"],"proteins":["NOS","NOS2","NOS2"],"pmid":"PMID10882786","pattern":"1"},"_input_hash":1400017478,"_task_hash":43942827,"spans":[{"text":"expression","start":127,"end":137,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651141170}
+{"text":"In this study, we report the possible participation of Hex in human sperm-ZP interaction. Human recombinant Hex (hrHex) was obtained by expression in a stable transfected CHO cell line. ","meta":{"cell_lines":["CHO"],"proteins":["HHEX","HHEX","RHEX"],"pmid":"PMID10908279","pattern":"1"},"_input_hash":-442352018,"_task_hash":-299258473,"spans":[{"text":"expression","start":136,"end":146,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651141253}
+{"text":"Furthermore, LPS plus CHX enhanced phosphorylation of ERK, p38, and CREB in a synergistic manner. Our results suggest that the phosphorylation of ERK, p38, and CREB may be involved in the regulation of synergistic c-fos mRNA expression induced by LPS plus CHX in C6 rat glioma cells.","meta":{"cell_lines":["MOG-G-RAT"],"proteins":["EPHB2","CREB1","EPHB2","CREB1"],"pmid":"PMID10924699","pattern":"1"},"_input_hash":-1093574844,"_task_hash":839654125,"spans":[{"text":"expression","start":225,"end":235,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651154312}
+{"text":"Our results suggest that the phosphorylation of ERK, p38, and CREB may be involved in the regulation of synergistic c-fos mRNA expression induced by LPS plus CHX in C6 rat glioma cells.","meta":{"cell_lines":["MOG-G-RAT"],"proteins":["EPHB2","CREB1"],"pmid":"PMID10924699","pattern":"1"},"_input_hash":2111779719,"_task_hash":-947291145,"spans":[{"text":"expression","start":127,"end":137,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651154322}
+{"text":"A third GEF, GRP3 (KIAA0846), activated both Ras and Rap1 and shared significant sequence homology with the calcium- and diacylglycerol-activated GEFs, GRP1 and GRP2. Similarly to previously identified Rap GEFs, C3G and Smg GDS, each of the newly identified exchange factors promoted the activation of Elk-1 in the LNCaP prostate tumor cell line where B-Raf can couple Rap1 to the extracellular receptor-activated kinase cascade. ","meta":{"cell_lines":["LNCaP"],"proteins":["SLC2A4RG","RASGRP3","HRAS","RAP1A","CYTH3","ELK1","RAF1","RAP1A"],"pmid":"PMID10934204","pattern":"10, 10"},"_input_hash":-1054349151,"_task_hash":1373140018,"spans":[{"text":"identified","start":191,"end":201,"pattern":817427073},{"text":"identified","start":247,"end":257,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651154371}
+{"text":"Similarly to previously identified Rap GEFs, C3G and Smg GDS, each of the newly identified exchange factors promoted the activation of Elk-1 in the LNCaP prostate tumor cell line where B-Raf can couple Rap1 to the extracellular receptor-activated kinase cascade. MR-GEF and PDZ-GEF both contain a region immediately N-terminal to their catalytic domains that share sequence homology with Ras-associating or RalGDS/AF6 homology (RA) domains. ","meta":{"cell_lines":["LNCaP"],"proteins":["ELK1","RAF1","RAP1A","RAPGEF5","SLC2A4RG","RALGDS","AFDN"],"pmid":"PMID10934204","pattern":"10, 10"},"_input_hash":495145925,"_task_hash":-658601396,"spans":[{"text":"identified","start":24,"end":34,"pattern":817427073},{"text":"identified","start":80,"end":90,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651154377}
+{"text":"The expression of TSHR has been identified in several extrathyroidal tissues, but its presence in the kidney remains controversial. We have used reverse-transcriptase polymerase chain reaction and DNA sequencing to demonstrate the presence of TSHR transcript in human and mouse kidney, in a primary culture of human kidney, and in a green monkey kidney epithelioid cell line. ","meta":{"cell_lines":["CRL-6440"],"proteins":["TSHR"],"pmid":"PMID10940722","pattern":"1, 10"},"_input_hash":983671816,"_task_hash":-1993282095,"spans":[{"text":"expression","start":4,"end":14,"pattern":283459217},{"text":"identified","start":32,"end":42,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651154446}
+{"text":"To evaluate the functional significance of this Cer pool, we aimed to convert it to glucosylceramide (GlcCer), by constitutive overexpression of glucosylceramide synthase (GCS). Jurkat cells, retrovirally transduced with GCS cDNA, showed a 10-12-fold increase in GCS activity in vitro and a 7-fold elevated basal GlcCer level in vivo. ","meta":{"cell_lines":["Jurkat"],"proteins":["EGFR","UGCG"],"pmid":"PMID10945987","pattern":"0"},"_input_hash":-1548880970,"_task_hash":-867009680,"spans":[{"text":"overexpression","start":127,"end":141,"pattern":1693961019}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651154479}
+{"text":"Sera were drawn prior to the procedure for the determination of AECA employing cyto-ELISA. AECA positive sera were further evaluated for its ability to promote in vitro E-selectin expression by HUVEC using a cell-based ELISA. ","meta":{"cell_lines":["HUVEC-C"],"proteins":["SELE"],"pmid":"PMID10963807","pattern":"1"},"_input_hash":1038639490,"_task_hash":1572004028,"spans":[{"text":"expression","start":180,"end":190,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651154535}
+{"text":"AECA positive sera were further evaluated for its ability to promote in vitro E-selectin expression by HUVEC using a cell-based ELISA. Patients with no coronary artery involvement had levels of AECA that did not differ from those obtained for patients with confirmed coronary atherosclerosis (one, two or three vessel disease). ","meta":{"cell_lines":["HUVEC-C"],"proteins":["SELE"],"pmid":"PMID10963807","pattern":"1"},"_input_hash":503709379,"_task_hash":1647810500,"spans":[{"text":"expression","start":89,"end":99,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651154545}
+{"text":"The discovery of LR11, a mosaic LDLR family member offers the opportunity to gain new insights into receptor multifunctionality. Here, we studied the proliferation-dependent expression of LR11 mRNA and protein using two cultured cell lines, IMR32 neuroblastoma and PC12 pheochromocytoma. ","meta":{"cell_lines":["IMR-32","PC-12","PC12"],"proteins":["SORL1","LDLR"],"pmid":"PMID10964672","pattern":"1"},"_input_hash":-1613828799,"_task_hash":-1174200646,"spans":[{"text":"expression","start":174,"end":184,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651154588}
+{"text":"Here, we studied the proliferation-dependent expression of LR11 mRNA and protein using two cultured cell lines, IMR32 neuroblastoma and PC12 pheochromocytoma. Within 24 h, the LR11 protein rose 1.9-fold in proliferating IMR32 cells, and increased further to 5.3-fold at 72 h. This conformed with a transcript level increase of 4.7-fold at 72 h in the proliferating cells. ","meta":{"cell_lines":["IMR-32","PC-12","PC12","IMR-32"],"proteins":["SORL1"],"pmid":"PMID10964672","pattern":"1"},"_input_hash":2015440943,"_task_hash":1914815382,"spans":[{"text":"expression","start":45,"end":55,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651154605}
+{"text":"Although a neuronal protein, alpha-synuclein is a major component of glial cytoplasmic inclusions (GCIs) in oligodendrocytes of multiple system atrophy (MSA) brains. Because alpha-synuclein has not been identified in oligodendrocytes of normal brains, we examined cultured rat brain oligodendrocytes during in vitro development and showed that alpha-synuclein mRNA and protein are present in cultured oligodendrocytes. ","meta":{"cell_lines":["MOG-G-RAT"],"proteins":["SNCA","SNCA"],"pmid":"PMID11002283","pattern":"10"},"_input_hash":-984732289,"_task_hash":1518771579,"spans":[{"text":"identified","start":203,"end":213,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651154686}
+{"text":"Because alpha-synuclein has not been identified in oligodendrocytes of normal brains, we examined cultured rat brain oligodendrocytes during in vitro development and showed that alpha-synuclein mRNA and protein are present in cultured oligodendrocytes. The expression of alpha-synuclein was developmentally regulated; it increased to peak levels at 2 or 3 days in culture but declined thereafter. ","meta":{"cell_lines":["MOG-G-RAT"],"proteins":["SNCA","SNCA"],"pmid":"PMID11002283","pattern":"10, 1"},"_input_hash":-887713430,"_task_hash":-319965741,"spans":[{"text":"identified","start":37,"end":47,"pattern":817427073},{"text":"expression","start":257,"end":267,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651154806}
+{"text":"Cotransfection of Zic1 and Zic2 expression vector and different APOE promoter-luciferase reporter constructs in U87 glioblastoma cell line showed that the three binding sites partially contributed to the trans-stimulation of the luciferase reporter. Ectopic expression of Zic1 and Zic2 in U87 cells also trans-stimulated the expression of the endogenous gene, increasing the amount of apolipoprotein E produced by glial cells. ","meta":{"cell_lines":["U-87MG Uppsala","U-87MG ATCC","U-87MG Uppsala","U-87MG ATCC"],"proteins":["ZIC1","ZIC1","ZIC2"],"pmid":"PMID11038359","pattern":"1, 1, 1"},"_input_hash":173592310,"_task_hash":647651793,"spans":[{"text":"expression","start":32,"end":42,"pattern":283459217},{"text":"expression","start":258,"end":268,"pattern":283459217},{"text":"expression","start":325,"end":335,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651154924}
+{"text":"Ectopic expression of Zic1 and Zic2 in U87 cells also trans-stimulated the expression of the endogenous gene, increasing the amount of apolipoprotein E produced by glial cells. These data indicate that Zic proteins might contribute to the transcriptional activity of the apolipoprotein E gene and suggest that apolipoprotein E could mediate some of the developmental processes in which Zic proteins are involved.","meta":{"cell_lines":["U-87MG Uppsala","U-87MG ATCC"],"proteins":["ZIC1","ZIC2","ZIC1","APOE","ZIC1"],"pmid":"PMID11038359","pattern":"1, 1"},"_input_hash":-1932573148,"_task_hash":4837442,"spans":[{"text":"expression","start":8,"end":18,"pattern":283459217},{"text":"expression","start":75,"end":85,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651154952}
+{"text":"We have used the Green Fluorescent Protein (GFP) gene as both a selectable marker and a reporter to study long-term transgene integration and expression in K562 cells. ","meta":{"cell_lines":["K-562"],"proteins":["GFP"],"pmid":"PMID11054549","pattern":"1"},"_input_hash":-489097271,"_task_hash":1457936808,"spans":[{"text":"expression","start":142,"end":152,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651154962}
+{"text":"Ceramide is generated by the hydrolysis of membrane sphingomyelin by sphingomyelinase (SMase) and is implicated in multiple signaling pathways, including activation of NF-kappaB. As NF-kappaB is pivotal in the expression of numerous genes associated with airway inflammation and asthma, the effects of ceramide and SMase were examined in human pulmonary A549 cells. Ceramide and SMase both induced cyclooxygenase (COX)-2 protein expression and stimulated PGE(2) release. ","meta":{"cell_lines":["A-549"],"proteins":["PTGS2"],"pmid":"PMID11062012","pattern":"1, 14, 1"},"_input_hash":680364756,"_task_hash":-314993341,"spans":[{"text":"expression","start":210,"end":220,"pattern":283459217},{"text":"associated","start":239,"end":249,"pattern":-162601778},{"text":"expression","start":429,"end":439,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651154999}
+{"text":"Although a neuronal protein, alpha-synuclein is a major component of glial cytoplasmic inclusions (GCIs) in oligodendrocytes of multiple system atrophy (MSA) brains. Because alpha-synuclein has not been identified in oligodendrocytes of normal brains, we examined cultured rat brain oligodendrocytes during in vitro development and showed that alpha-synuclein mRNA and protein are present in cultured oligodendrocytes. ","meta":{"cell_lines":["MOG-G-RAT"],"proteins":["SNCA","SNCA"],"pmid":"PMID11002283","score":0.3577599525},"_input_hash":-984732289,"_task_hash":-1014009902,"label":"GOOD_MATCH","score":0.3577599525,"priority":0.3577599525,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651155066}
+{"text":"Because alpha-synuclein has not been identified in oligodendrocytes of normal brains, we examined cultured rat brain oligodendrocytes during in vitro development and showed that alpha-synuclein mRNA and protein are present in cultured oligodendrocytes. The expression of alpha-synuclein was developmentally regulated; it increased to peak levels at 2 or 3 days in culture but declined thereafter. ","meta":{"cell_lines":["MOG-G-RAT"],"proteins":["SNCA","SNCA"],"pmid":"PMID11002283","score":0.4916446507},"_input_hash":-887713430,"_task_hash":-1723772356,"label":"GOOD_MATCH","score":0.4916446507,"priority":0.4916446507,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651155069}
+{"text":"Ceramide is generated by the hydrolysis of membrane sphingomyelin by sphingomyelinase (SMase) and is implicated in multiple signaling pathways, including activation of NF-kappaB. As NF-kappaB is pivotal in the expression of numerous genes associated with airway inflammation and asthma, the effects of ceramide and SMase were examined in human pulmonary A549 cells. Ceramide and SMase both induced cyclooxygenase (COX)-2 protein expression and stimulated PGE(2) release. ","meta":{"cell_lines":["A-549"],"proteins":["PTGS2"],"pmid":"PMID11062012","score":0.2825073302},"_input_hash":680364756,"_task_hash":-1779464284,"label":"GOOD_MATCH","score":0.2825073302,"priority":0.2825073302,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651155109}
+{"text":"Immunoreactivity for P2X1 and P2X3 subunits was present separately or together in DRG neurons. P2X1 immunoreactivity was present in both IB4-positive and IB4-negative cells. ","meta":{"cell_lines":["DrG","IB-4","IB4"],"proteins":["P2RX1","P2RX3","P2RX1"],"pmid":"PMID11095524","score":0.5441809297},"_input_hash":-382675837,"_task_hash":-767884196,"label":"GOOD_MATCH","score":0.5441809297,"priority":0.5441809297,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651155122}
+{"text":"The mechanisms for iNOS expression in epithelial cells, however, are not fully understood. In the present study, we investigated the role of macrophages in epithelial iNOS expression by coculturing a stimulated murine macrophage-like cell line, RAW 264.7, with either tumor promoter-sensitive (P+) or promoter-resistant (P-) JB6 murine epidermal cells. ","meta":{"cell_lines":["RAW 264.7"],"proteins":["NOS2","NOS2"],"pmid":"PMID11103793","pattern":"1, 1"},"_input_hash":1534462925,"_task_hash":346228806,"spans":[{"text":"expression","start":24,"end":34,"pattern":283459217},{"text":"expression","start":172,"end":182,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651155198}
+{"text":"In the present study, we investigated the role of macrophages in epithelial iNOS expression by coculturing a stimulated murine macrophage-like cell line, RAW 264.7, with either tumor promoter-sensitive (P+) or promoter-resistant (P-) JB6 murine epidermal cells. After monoculture, treatment of RAW 264.7 cells with IFN-gamma for 24 h generated a large amount of nitrite (NO2-), as reported previously, whereas no increase in NO2- concentration was observed in the IFN-gamma-treated P+ or P-subclones. ","meta":{"cell_lines":["RAW 264.7","RAW 264.7"],"proteins":["NOS2","IFNG"],"pmid":"PMID11103793","pattern":"1"},"_input_hash":563968987,"_task_hash":965458833,"spans":[{"text":"expression","start":81,"end":91,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651155224}
+{"text":"Western blotting analysis revealed that, after coculture, iNOS protein was up-regulated 55-fold more than the control in JB6 P+ but not in P- cells. IFN-gamma-treated RAW 264.7 cells secreted proinflammatory cytokines, including tumor necrosis factor (TNF)-alpha and interleukin (IL)-1beta. ","meta":{"cell_lines":["RAW 264.7"],"proteins":["NOS2","TNF"],"pmid":"PMID11103793","pattern":"9"},"_input_hash":-438000775,"_task_hash":823243492,"spans":[{"text":"secreted","start":183,"end":191,"pattern":1414062687}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651155251}
+{"text":"IFN-gamma-treated RAW 264.7 cells secreted proinflammatory cytokines, including tumor necrosis factor (TNF)-alpha and interleukin (IL)-1beta. The addition of IFN-gamma-treated RAW 264.7 cell-conditioned media to P+ subclones led to a significant enhancement of NO2- formation that was diminished by the TNF-alpha-specific but not IL-1beta-specific antibody. ","meta":{"cell_lines":["RAW 264.7","RAW 264.7"],"proteins":["TNF"],"pmid":"PMID11103793","pattern":"9"},"_input_hash":1953835928,"_task_hash":145346617,"spans":[{"text":"secreted","start":34,"end":42,"pattern":1414062687}],"label":"GOOD_MATCH","_view_id":"classification","answer":"accept","_timestamp":1651155265}
+{"text":"When combined with IFN-gamma, the recombinant TNF-alpha (1-100 ng/ml) enhanced NO2- formation in JB6 P+ cells, whereas IL-1beta (1-100 ng/ml) did not. These results led us to conclude that IFN-gamma-treated RAW 264.7 cells release TNF-alpha to induce iNOS expression in promoter-sensitive JB6 cells. ","meta":{"cell_lines":["RAW 264.7"],"proteins":["IFNG","TNF","TNF","NOS2"],"pmid":"PMID11103793","pattern":"1"},"_input_hash":-35720259,"_task_hash":1847167449,"spans":[{"text":"expression","start":256,"end":266,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651155419}
+{"text":"These results led us to conclude that IFN-gamma-treated RAW 264.7 cells release TNF-alpha to induce iNOS expression in promoter-sensitive JB6 cells. Thus, we propose the hypothesis that macrophages stimulate neoplastic cells with TNF-alpha via a paracrine loop to induce epithelial iNOS protein expression.","meta":{"cell_lines":["RAW 264.7"],"proteins":["TNF","NOS2","TNF","NOS2"],"pmid":"PMID11103793","pattern":"1, 1"},"_input_hash":627357364,"_task_hash":-1266626857,"spans":[{"text":"expression","start":105,"end":115,"pattern":283459217},{"text":"expression","start":295,"end":305,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651155431}
+{"text":"When sera were analyzed by western blot, the predominating responses of the serum from immunized fish on the reduced western blot were against M1, a matrix protein of the virus and to a 90 kDa stress protein. The 90 kDa protein was identified by a monoclonal antibody as a stress protein derived from the CHSE-214 cells in which the purified IHN virus was grown and which associates with the virus during purification.","meta":{"cell_lines":["CHSE/F","CHSE-214"],"proteins":["M"],"pmid":"PMID11104067","pattern":"10"},"_input_hash":-732439155,"_task_hash":280928204,"spans":[{"text":"identified","start":232,"end":242,"pattern":817427073}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651155511}
+{"text":"Expression of mouse MD-2 conferred both LPS and Taxol responsiveness on human embryonic kidney 293 cells expressing mouse TLR4, whereas expression of human MD-2 conferred LPS responsiveness alone, suggesting that MD-2 is responsible for the species-specificity as to Taxol responsiveness. ","meta":{"cell_lines":["HEK293"],"proteins":["LY96","TLR4","LY96","LY96"],"pmid":"PMID11123270","pattern":"1, 4, 1"},"_input_hash":1977313494,"_task_hash":2087588852,"spans":[{"text":"Expression","start":0,"end":10,"pattern":283459217},{"text":"expressing","start":105,"end":115,"pattern":-1894080012},{"text":"expression","start":136,"end":146,"pattern":283459217}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651155543}
+{"text":"We have previously identified a mutation (R273W) in the von Willebrand factor (VWF) propeptide that results in quantitative deficiency of plasma VWF and a loss of high molecular weight VWF multimers. Recombinant VWF having the R273W mutation (rVWFR273W) expressed in COS-7 cells demonstrated severely impaired secretion and degradation in an intracellular location [Allen, S., et al. (2000) Blood 96, 560-568]. ","meta":{"cell_lines":["COS-7"],"proteins":["VWF","VWF","VWF","VWF","VWF"],"pmid":"PMID11162537","pattern":"10, 2"},"_input_hash":-1495559513,"_task_hash":899038911,"spans":[{"text":"identified","start":19,"end":29,"pattern":817427073},{"text":"expressed","start":254,"end":263,"pattern":784610258}],"label":"GOOD_MATCH","_view_id":"classification","answer":"reject","_timestamp":1651155608}
+{"text":"When combined with IFN-gamma, the recombinant TNF-alpha (1-100 ng/ml) enhanced NO2- formation in JB6 P+ cells, whereas IL-1beta (1-100 ng/ml) did not. These results led us to conclude that IFN-gamma-treated RAW 264.7 cells release TNF-alpha to induce iNOS expression in promoter-sensitive JB6 cells. ","meta":{"cell_lines":["RAW 264.7"],"proteins":["IFNG","TNF","TNF","NOS2"],"pmid":"PMID11103793","score":0.5677210093},"_input_hash":-35720259,"_task_hash":622445019,"label":"GOOD_MATCH","score":0.5677210093,"priority":0.5677210093,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651155621}
+{"text":"PDX-1 activation was mediated through three highly conserved segments of the transactivation domain. In addition, when cotransfected together with the GAL4-substituted insulin enhancer reporter gene in glucose-responsive MIN-6 beta-cells, glucose-induced activation is observed with GAL4:PDX-1 but not with fusions of the heterologous activation domains from herpes virus VP16 or adenovirus-5 E1A proteins. ","meta":{"cell_lines":["Beta","MIN6"],"proteins":["PDX1"],"pmid":"PMID11117522","score":0.8386303186},"_input_hash":907005043,"_task_hash":1652376841,"label":"GOOD_MATCH","score":0.8386303186,"priority":0.8386303186,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651155664}
+{"text":"Steroid receptors mediate their actions by using various coregulatory proteins. We have recently characterized ARIP3/PIASx alpha as an androgen receptor (AR)-interacting protein (ARIP) that belongs to the PIAS [protein inhibitor of activated STAT (signal transducer and activator of transcription)] protein family implicated in the inhibition of cytokine signaling. ","meta":{"cell_lines":["ARIP"],"proteins":["PIAS2","AR"],"pmid":"PMID11117529","score":0.4171175659},"_input_hash":-1903689841,"_task_hash":-1445376872,"label":"GOOD_MATCH","score":0.4171175659,"priority":0.4171175659,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651157436}
+{"text":"Since the RAS protein plays a key role in signal transduction, disruption of its signaling pathway may be particularly effective. The phenyl fatty acid, phenyl acetate, a differentiation inducer that affects post-translational processing of RAS, was tested for its ability to prevent depleted uranium-induced neoplastic transformation using HOS cells. ","meta":{"cell_lines":["HOS"],"proteins":["HRAS","HRAS"],"pmid":"PMID11121229","score":0.6836490631},"_input_hash":-896957206,"_task_hash":1733021682,"label":"GOOD_MATCH","score":0.6836490631,"priority":0.6836490631,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651157468}
+{"text":"The phenyl fatty acid, phenyl acetate, a differentiation inducer that affects post-translational processing of RAS, was tested for its ability to prevent depleted uranium-induced neoplastic transformation using HOS cells. ","meta":{"cell_lines":["HOS"],"proteins":["HRAS"],"pmid":"PMID11121229","score":0.5803450346},"_input_hash":-539221596,"_task_hash":554408117,"label":"GOOD_MATCH","score":0.5803450346,"priority":0.5803450346,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651157476}
+{"text":"Expression of mouse MD-2 conferred both LPS and Taxol responsiveness on human embryonic kidney 293 cells expressing mouse TLR4, whereas expression of human MD-2 conferred LPS responsiveness alone, suggesting that MD-2 is responsible for the species-specificity as to Taxol responsiveness. ","meta":{"cell_lines":["HEK293"],"proteins":["LY96","TLR4","LY96","LY96"],"pmid":"PMID11123270","score":0.493870914},"_input_hash":1977313494,"_task_hash":-99392002,"label":"GOOD_MATCH","score":0.493870914,"priority":0.493870914,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651157557}
+{"text":"Moreover, 2a (10 microM) also induced severe damage of cytoskeletal F-actin filaments after a 5 h incubation in GL15 cells. This was also observed but to a smaller extent, for 2b. ","meta":{"cell_lines":["GL15"],"proteins":["ACTB"],"pmid":"PMID11129979","score":0.5230305195},"_input_hash":971630594,"_task_hash":-1120375091,"label":"GOOD_MATCH","score":0.5230305195,"priority":0.5230305195,"spans":[],"_view_id":"classification","answer":"accept","_timestamp":1651157584}
+{"text":"High levels of Bak gene transfer were seen after coadministration of Ad/GT-Bak and Ad/GV16 in both mesothelioma cell lines. Apoptosis was induced 24 hours after Bak but not LacZ gene transfer ([Bak: I-45, 36%; REN, 25%] vs [LacZ: I-45, 1%; REN, 3%], P <.05]) in p53-sensitive (REN) and p53-resistant (I-45) cell lines. ","meta":{"cell_lines":["I-45","I-45"],"proteins":["BAK1","BAK1","C3","C3","C3"],"pmid":"PMID11135160","score":0.5020788312},"_input_hash":831858563,"_task_hash":-722901365,"label":"GOOD_MATCH","score":0.5020788312,"priority":0.5020788312,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651157676}
+{"text":"We have previously identified a mutation (R273W) in the von Willebrand factor (VWF) propeptide that results in quantitative deficiency of plasma VWF and a loss of high molecular weight VWF multimers. Recombinant VWF having the R273W mutation (rVWFR273W) expressed in COS-7 cells demonstrated severely impaired secretion and degradation in an intracellular location [Allen, S., et al. (2000) Blood 96, 560-568]. ","meta":{"cell_lines":["COS-7"],"proteins":["VWF","VWF","VWF","VWF","VWF"],"pmid":"PMID11162537","score":0.4374935329},"_input_hash":-1495559513,"_task_hash":-1960478583,"label":"GOOD_MATCH","score":0.4374935329,"priority":0.4374935329,"spans":[],"_view_id":"classification","answer":"reject","_timestamp":1651157691}