human: Given a hyperedge-centered hypergraph: <hypergraph>, where the center hyperedge is induced by one source paper and its member nodes are the cited papers.

Details of the hypergraph:
Center hyperedge (induced by source paper "sparseassembler2 sparse k mer graph for memory efficient genome assembly"):
  Abstract: The formal version of our work has been published in BMC Bioinformatics and can be found here: this http URL Motivation: To tackle the problem of huge memory usage associated with de Bruijn graph-based algorithms, upon which some of the most widely used de novo genome assemblers have been built, we released SparseAssembler1. SparseAssembler1 can save as much as 90% memory consumption in comparison with the state-of-art assemblers, but it requires rounds of denoising to accurately assemble genomes. In this paper, we introduce a new general model for genome assembly that uses only sparse k-mers. The new model replaces the idea of the de Bruijn graph from the beginning, and achieves similar memory efficiency and much better robustness compared with our previous SparseAssembler1. Results: We demonstrate that the decomposition of reads of all overlapping k-mers, which is used in existing de Bruijn graph genome assemblers, is overly cautious. We introduce a sparse k-mer graph structure for saving sparse k-mers, which greatly reduces memory space requirements necessary for de novo genome assembly. In contrast with the de Bruijn graph approach, we devise a simple but powerful strategy, i.e., finding links between the k-mers in the genome and traversing following the links, which can be done by saving only a few k-mers. To implement the strategy, we need to only select some k-mers that may not even be overlapping ones, and build the links between these k-mers indicated by the reads. We can traverse through this sparse k-mer graph to build the contigs, and ultimately complete the genome assembly. Since the new sparse k-mers graph shares almost all advantages of de Bruijn graph, we are able to adapt a Dijkstra-like breadth-first search algorithm to circumvent sequencing errors and resolve polymorphisms.

Includes members:
  Member "sparseassembler de novo assembly with the sparse de bruijn graph":
    also connected through other hyperedges:
      (none)
  Member "practical entropy compressed rank select dictionary":
    also connected through other hyperedges:
      - Hyperedge HE-1 (induced by source paper "bitvectors with runs and the successor predecessor problem")

Question: Please tell me which class the source paper belongs to. The 40 classes are: cs.NA(Numerical Analysis), cs.MM(Multimedia), cs.LO(Logic in Computer Science), cs.CY(Computers and Society), cs.CR(Cryptography and Security), cs.DC(Distributed, Parallel, and Cluster Computing), cs.HC(Human-Computer Interaction), cs.CE(Computational Engineering, Finance, and Science), cs.NI(Networking and Internet Architecture), cs.CC(Computational Complexity), cs.AI(Artificial Intelligence), cs.MA(Multiagent Systems), cs.GL(General Literature), cs.NE(Neural and Evolutionary Computing), cs.SC(Symbolic Computation), cs.AR(Hardware Architecture), cs.CV(Computer Vision and Pattern Recognition), cs.GR(Graphics), cs.ET(Emerging Technologies), cs.SY(Systems and Control), cs.CG(Computational Geometry), cs.OH(Other Computer Science), cs.PL(Programming Languages), cs.SE(Software Engineering), cs.LG(Machine Learning), cs.SD(Sound), cs.SI(Social and Information Networks), cs.RO(Robotics), cs.IT(Information Theory), cs.PF(Performance), cs.CL(Computation and Language), cs.IR(Information Retrieval), cs.MS(Mathematical Software), cs.FL(Formal Languages and Automata Theory), cs.DS(Data Structures and Algorithms), cs.OS(Operating Systems), cs.GT(Computer Science and Game Theory), cs.DB(Databases), cs.DL(Digital Libraries), cs.DM(Discrete Mathematics). Directly output the class name.

gpt: cs.DS(Data Structures and Algorithms)