GitHub repository: tomazc/iCount

Issues:
issue_215: state: open
title: Could iCount xlsites support soft-clipping?
user: TomSmithCGAT
issue_214: state: open
title: AssertionError : assert current_gene not in gene_ids 
user: mohamedbahru
issue_213: state: open
title: Assertion error : assert starts == sorted(starts)
user: mohamedbahru
issue_212: state: open
title: Help with installation
user: valerieT1998
issue_210: state: open
title: How to cite update
user: michaelmhoffman
issue_209: state: open
title: iCount xlsites--many reads with second-start not falling on segmentation
user: ryanmarina
issue_208: state: open
title: Adding multithreading option for cutadapt and demultiplex sub commands
user: skchronicles
issue_207: state: open
title: iCount demultiplex --minimum_length cannot work
user: wjzhangiris
issue_206: state: open
title: issue with indexstar
user: vd77
issue_204: state: open
title: Snakemake
user: Faitero
issue_203: state: open
title: Error in demultiplex.py with 3' barcode
user: CharlotteAnne
issue_199: state: open
title: Setup fails with pip install
user: SamBryce-Smith
issue_191: state: open
title: Question: iCount xlsites expected runtime
user: mirax87
issue_186: state: open
title: segment:error in gene level segmentation
user: snk9987
issue_158: state: open
title: Definitions from 'summary' tool
user: raflynn
issue_157: state: open
title: Memory Issue - Running 'peaks' tool
user: raflynn
issue_139: state: open
title: Support Prokaryotic Genomes
user: Faitero
issue_134: state: open
title: Support custom arguments in mapstar and indexstar 
user: JureZmrzlikar
issue_130: state: open
title: Problems connecting to ENSEMBL FTP server
user: Faitero
issue_86: state: open
title: Pretty print CLI help
user: JureZmrzlikar
issue_73: state: open
title: Autocomplete
user: JureZmrzlikar
issue_20: state: open
title: Add kmer enrichment analysis
user: tomazc
issue_8: state: open
title: Obtain iCLIP data from archives (ENA, ENCODE, any URL, ...)
user: tomazc