GitHub repository: CDCgov/MicrobeTrace

Issues:
issue_789: state: open
title: ANGULAR: Need ability to save as a style file
user: ikb6
issue_788: state: open
title: Angular: Node/Link color tables appear/disappear in different views
user: roxycintron
labels: [issue-type] bug: Something isn't working
issue_787: state: open
title: Can not send email to microbetrace@cdc.gov
user: JieH9
issue_786: state: open
title: ANGULAR and PROD: Need an indicator that MT is still trying to load
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_785: state: open
title: Improve Performance + Load Times
user: mossy426
issue_784: state: open
title: Phylogentic Label Issue
user: mossy426
issue_782: state: open
title: PROD: Aww snap error with large Hep. A dataset
user: ikb6
labels: [issue-type] feedback: Further information is requested
help-wanted: We could use some help on this!
issue_781: state: open
title: Angular: Enable using pre-loaded color palette
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_780: state: open
title: Angular: Table View showing only 1 page of entries
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_779: state: open
title: ANGULAR and PROD Check TN93.js
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_778: state: open
title: ANGULAR: Align key tables and then export the group  as SVG
user: ikb6
issue_777: state: open
title: ANGULAR: Saving as SVG
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_775: state: open
title: MT PROD: Resolve option not working
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_772: state: open
title: Integrate Epi Curve View
user: mossy426
issue_765: state: open
title: ANGULAR: Phylogeny. Seeing negative branches
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_764: state: open
title: ANGULAR: Phylogeny Need to add Horizontal and Vertical Stretch
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_763: state: open
title: ANGULAR-Phylogeny Sliders on Branch tab do not work
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_762: state: open
title: ANGULAR_ Phylogeny- Label size is mislabeled as Branch size
user: ikb6
labels: [issue-type] feedback: Further information is requested
issue_761: state: open
title: ANGULAR: Phylogeny View- leaf nodes displayed are of varied sizes
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_760: state: open
title: ANGULAR-Phylogeny View- sliders do not work
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_759: state: open
title: ANGULAR: Phylogeny view  drop downs not working
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_757: state: open
title: ANGULAR: In Table view, request ability to uncheck multiple boxes before it implements the change
user: ikb6
labels: [issue-type] feedback: Further information is requested
issue_756: state: open
title: ANGULAR Table view: Can we change multi page view to single page with scrolling ability?
user: ikb6
labels: [issue-type] feedback: Further information is requested
issue_755: state: open
title: ANGULAR- Searching for ID does not highlight node (2D view) or row (in Table view)
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_754: state: open
title: Feature request:  ability to use a color assignment file
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_747: state: open
title: ANGULAR vs PROD: Default DIST thresholds for JSON files are different in the two
user: ikb6
labels: [issue-type] feedback: Further information is requested
issue_736: state: open
title: MTDEV and PROD
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_732: state: open
title: Phylogenetic tree from a distance matrix
user: mlarjim
issue_727: state: open
title: MTPROD- header of Polygon key table remains 
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_726: state: open
title: Bump postcss, cssnano and postcss-cli
user: dependabot[bot]
labels: dependencies: Pull requests that update a dependency file
issue_720: state: open
title: ANGULAR and DEV Changes to key table are not saved when session file is reopened
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_715: state: open
title: ANGULAR: MT needs to be able to accept Auspice URLs via a link
user: reagank
issue_712: state: open
title: Angular Add google analytics code to track visitors
user: reagank
issue_709: state: open
title: Add github to content-security-policy
user: reagank
issue_708: state: open
title: Using MicrobeTrace from command line
user: mlarjim
labels: [issue-type] enhancement: New feature or request
issue_696: state: open
title: Timeline Disappears when Session Saved and Reloaded
user: qqh3-cdc
labels: [issue-type] bug: Something isn't working
issue_676: state: open
title: [Snyk] Security upgrade is-svg from 4.3.2 to 4.4.0
user: snyk-bot
issue_675: state: open
title: Bump d3-color, three-forcegraph, d3, plotly.js and tidytree
user: dependabot[bot]
labels: dependencies: Pull requests that update a dependency file
issue_671: state: open
title: [Snyk] Security upgrade is-svg from 4.3.2 to 4.4.0
user: snyk-bot
issue_666: state: open
title: ANGULAR: node colors do not transfer to tree view
user: ikb6
labels: [issue-type] feedback: Further information is requested
issue_665: state: open
title: ANGULAR: Downlaod table not working
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_663: state: open
title: ANGULAR: when we zoom in, links and nodes disconnect
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_660: state: open
title: ANGULAR: Add scrolling for Table view rather than pages
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_659: state: open
title: ANGULAR: Searching for a node in Table view
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_657: state: open
title: ANGULAR: Map view does not have stats table and link color table is incomplete
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_656: state: open
title: ANGULAR: SHow/Hide country and state bug
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_655: state: open
title: ANGULAR: Basemap needs to be updated
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_639: state: open
title: DEV: Link transparency issue in saved session
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_638: state: open
title: DEV: Key table heading does not change when node shape attribute is changed
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_635: state: open
title: Bump jszip from 3.7.0 to 3.8.0
user: dependabot[bot]
labels: dependencies: Pull requests that update a dependency file
issue_628: state: open
title: ANGULAR: Map view not working
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_627: state: open
title: ANGULAR: Unable to export table view
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_610: state: open
title: ANGULAR Selecting nodes in 2D network not working
user: reagank
issue_609: state: open
title: ANGULAR Scrollbar needed for Table view
user: reagank
issue_606: state: open
title: ANGULAR: Color nodes and links in phylogenetic tree view
user: roxycintron
labels: [issue-type] bug: Something isn't working
issue_605: state: open
title: ANGULAR: Branch node size slider in phylogenetic tree view
user: roxycintron
labels: [issue-type] bug: Something isn't working
issue_599: state: open
title: Unpinned key tables move when using arrow in save file name text field
user: billswitzer2
issue_596: state: open
title: ANGULAR: NWK file downloaded from Phylogeny view does not display in other tree viewers
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_572: state: open
title: Changing Shape in Map View
user: mossy426
issue_571: state: open
title: International Provinces for Map
user: mossy426
issue_562: state: open
title: MTDEV: Add reciprocal/non-reciprocal option to link width
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_550: state: open
title: Complete Landing Page Functionality
user: mossy426
issue_548: state: open
title: MAP VIEW: Customizing link colors leaves residual links in the old color
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_533: state: open
title: Research regarding Migration to G4
user: mossy426
issue_510: state: open
title: Add SVG export to network and map views
user: roxycintron
issue_504: state: open
title: Show nodes for international provinces in Map view
user: roxycintron
issue_502: state: open
title: Globe View - Node/Link colors and transparency
user: roxycintron
labels: [issue-type] bug: Something isn't working
issue_483: state: open
title: XLS file types not saving contents in microbetrace JSON
user: mossy426
labels: [issue-type] bug: Something isn't working
issue_473: state: open
title: Integrate Waterfall component with app
user: reagank
issue_471: state: open
title: Integrate Scatterplot component with app
user: reagank
issue_469: state: open
title: Integrate HeatMap component with app
user: reagank
issue_468: state: open
title: Integrate Bubbles component with app
user: reagank
issue_467: state: open
title: Integrate Aggregation component with app
user: reagank
issue_466: state: open
title: Integrate Flow Diagram component with app
user: reagank
issue_464: state: open
title: Weighted Multi-Filtration
user: AABoyles
issue_463: state: open
title: Filter by cladistic depth
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_450: state: open
title: Hiding and showing singletons in a more aesthetic way
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_446: state: open
title: variables are case sensitive. Can that be changed?
user: ikb6
labels: [issue-type] feedback: Further information is requested
issue_442: state: open
title: Separate heatmap, phylo trees and sequences into a box in the view drop down since they are all sequence-related views
user: billswitzer2
labels: [issue-type] enhancement: New feature or request
issue_429: state: open
title: Selecting Obs in Table
user: multimodal-epi
labels: [issue-type] enhancement: New feature or request
issue_415: state: open
title: Where's Waldo?
user: billswitzer2
issue_391: state: open
title: Translate Content to Spanish
user: frankambrosio3
issue_390: state: open
title: Feature Request: Transparency slider to node shape box
user: multimodal-epi
labels: [issue-type] enhancement: New feature or request
issue_389: state: open
title: Timeline State Chronology Functionality
user: frankambrosio3
issue_381: state: open
title: Trouble with MicrobeTrace generated cluster files
user: multimodal-epi
issue_379: state: open
title: Add chronology state file
user: frankambrosio3
labels: [issue-type] enhancement: New feature or request
issue_375: state: open
title: tooltip 
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_371: state: open
title: Sequence IDs in sequencing view
user: multimodal-epi
labels: [issue-type] bug: Something isn't working
issue_367: state: open
title: Change Node Shape
user: mossy426
issue_364: state: open
title: Link transparency refers to link type index rather than link type itself during timeplay
user: frankambrosio3
labels: [issue-type] bug: Something isn't working
issue_358: state: open
title: Fix capitalization issue 
user: frankambrosio3
labels: [issue-type] enhancement: New feature or request
issue_349: state: open
title: Large EL Input
user: frankambrosio3
labels: [issue-type] bug: Something isn't working
issue_328: state: open
title: Refactoring
user: mossy426
issue_326: state: open
title: External Work
user: mossy426
issue_325: state: open
title: As a <user type>, I want to <task> so that <goal>.
user: mossy426
issue_324: state: open
title: Template Examples
user: mossy426
issue_323: state: open
title: As a user, I want to be able to visualize my data as a bubble chart with various configurations.
user: mossy426
issue_322: state: open
title: As a user, I want to be able to visualize my data as a 3D network with various configurations
user: mossy426
issue_321: state: open
title: 2D Network View
user: mossy426
issue_320: state: open
title: Website Redesign
user: mossy426
issue_317: state: open
title: Search function in Links tab
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_311: state: open
title: Warn users to align if sequences are detected
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] beginner: Start here!
[effort] small: Not a huge lift
issue_310: state: open
title: MT crashing when working with a saved file with large number of nodes
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_306: state: open
title: Add Partial Edge Drawing
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] intermediate: Not too easy, not too tough. Just right!
[effort] small: Not a huge lift
issue_304: state: open
title: Typescript Proof-of-Concept
user: AABoyles
issue_303: state: open
title: Added ability to use MEGA files; revised MEGA parser
user: rob-caldwell
issue_300: state: open
title: Add 3D Tree View
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[effort] large: Something that's really difficult, given the current state of MicrobeTrace
[skill-level] advanced: A tough nut to crack.
issue_289: state: open
title: Color schemes
user: Sergey-Knyazev
issue_288: state: open
title: Update AlignmentViewer
user: AABoyles
issue_284: state: open
title: Create a Social Preview Image
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[issue-type] feedback: Further information is requested
help-wanted: We could use some help on this!
[effort] medium: This could take a bit of work.
issue_282: state: open
title: Refactor session.style.widgets
user: AABoyles
labels: [effort] large: Something that's really difficult, given the current state of MicrobeTrace
[skill-level] intermediate: Not too easy, not too tough. Just right!
issue_279: state: open
title: Legend keys are not editable with any other software
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_278: state: open
title: Setting link length to be uniform
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_277: state: open
title: Ability to add free text
user: ikb6
labels: [issue-type] enhancement: New feature or request
issue_276: state: open
title: Shape bug 
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_274: state: open
title: Tutorial slidedeck
user: Sergey-Knyazev
issue_273: state: open
title: Continuous color ramps for numerical variables
user: Sergey-Knyazev
issue_268: state: open
title: Export Videos
user: AABoyles
issue_266: state: open
title: Node sizing and scaling
user: ikb6
labels: [issue-type] bug: Something isn't working
issue_261: state: open
title: Add Large File Saving Loader
user: AABoyles
issue_258: state: open
title: Deprecate Epi Curve
user: AABoyles
issue_257: state: open
title: Deprecate Offline Help
user: AABoyles
issue_256: state: open
title: Order clusters by size
user: odb8-kt
issue_251: state: open
title: Shape mapping not staying consistent when changing shape 
user: jaywokim
labels: [issue-type] bug: Something isn't working
issue_248: state: open
title: Transition to GeoBuf
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] beginner: Start here!
[effort] small: Not a huge lift
issue_245: state: open
title: Graph Readability Scoring
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] intermediate: Not too easy, not too tough. Just right!
[effort] medium: This could take a bit of work.
issue_228: state: open
title: Statistical Menu
user: ells
labels: [issue-type] enhancement: New feature or request
[effort] large: Something that's really difficult, given the current state of MicrobeTrace
help-wanted: We could use some help on this!
Research Required: Further research is required to determine implementation feasibility
issue_223: state: open
title: Map view Nodes are 'hidden' when basemap is not enabled
user: ikb6
labels: [issue type] intermittent bug: Only applied to bugs that are difficult to reproduce.
issue_198: state: open
title: Import and Export of GRAPHML file type
user: ells
labels: [issue-type] enhancement: New feature or request
[effort] medium: This could take a bit of work.
issue_176: state: open
title: online map is not displaying when select "Basemap" show.
user: newuser1971
issue_171: state: open
title: Network-lite based on stardust or PIXI.js
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] intermediate: Not too easy, not too tough. Just right!
[effort] medium: This could take a bit of work.
issue_169: state: open
title: Streaming Save
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[effort] large: Something that's really difficult, given the current state of MicrobeTrace
[skill-level] intermediate: Not too easy, not too tough. Just right!
issue_168: state: open
title: Implement Scroll-integrated zoom controller
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[effort] medium: This could take a bit of work.
issue_167: state: open
title: Replace Radio buttons with checkmark switches
user: AABoyles
labels: [effort] large: Something that's really difficult, given the current state of MicrobeTrace
[skill-level] beginner: Start here!
issue_166: state: open
title: Export Line List as PDF
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[effort] small: Not a huge lift
issue_165: state: open
title: 2D Histogram
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[effort] medium: This could take a bit of work.
issue_164: state: open
title: Relocate Crosstab functionality into Aggregate View
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[effort] medium: This could take a bit of work.
issue_154: state: open
title: Hide/Pin Cluster
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_153: state: open
title: For sequence inputs, allow multiple sequences with common ID
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[issue-type] feedback: Further information is requested
[skill-level] advanced: A tough nut to crack.
[effort] medium: This could take a bit of work.
issue_130: state: open
title: bootstrap support in Phylogeny?
user: ikb6
labels: [issue-type] enhancement: New feature or request
[effort] large: Something that's really difficult, given the current state of MicrobeTrace
[skill-level] advanced: A tough nut to crack.
issue_121: state: open
title: Hide/Isolate/Filter Clusters
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_119: state: open
title: Flow Diagram Colors
user: AABoyles
labels: [effort] medium: This could take a bit of work.
issue_112: state: open
title: Filter by Degree of Separation from selected nodes
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] advanced: A tough nut to crack.
[effort] medium: This could take a bit of work.
issue_105: state: open
title: Map Node Border Pattern to variable
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] intermediate: Not too easy, not too tough. Just right!
[effort] medium: This could take a bit of work.
issue_96: state: open
title: Context-aware Drop-up/Drop-left Context Menus
user: AABoyles
labels: [skill-level] beginner: Start here!
[effort] small: Not a huge lift
issue_87: state: open
title: Rotate Network
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] advanced: A tough nut to crack.
[effort] medium: This could take a bit of work.
issue_86: state: open
title: Add Demos to Views
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[issue-type] feedback: Further information is requested
[effort] large: Something that's really difficult, given the current state of MicrobeTrace
[skill-level] beginner: Start here!
issue_82: state: open
title: Dashes and Dots!
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[effort] large: Something that's really difficult, given the current state of MicrobeTrace
[skill-level] advanced: A tough nut to crack.
issue_81: state: open
title: Set Link Width by Ordinal Variables
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] intermediate: Not too easy, not too tough. Just right!
[effort] medium: This could take a bit of work.
issue_62: state: open
title: Gantt Chart Selections
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[skill-level] advanced: A tough nut to crack.
[effort] medium: This could take a bit of work.
issue_53: state: open
title: Add Additional Genetic Distance Models
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_49: state: open
title: Import/Export Cytoscape Files
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[issue-type] feedback: Further information is requested
issue_47: state: open
title: Import MEGA Files
user: AABoyles
labels: [issue-type] enhancement: New feature or request
help-wanted: We could use some help on this!
code.gov: To be indexed on Code.gov
[skill-level] beginner: Start here!
[effort] small: Not a huge lift
issue_46: state: open
title: Layout Modes
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_44: state: open
title: Timeline
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[effort] large: Something that's really difficult, given the current state of MicrobeTrace
issue_42: state: open
title: Gephi Importing/Exporting
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_41: state: open
title: Distance Matrix Population Heuristic
user: AABoyles
labels: [issue-type] enhancement: New feature or request
[effort] large: Something that's really difficult, given the current state of MicrobeTrace
issue_38: state: open
title: Map Select-by-area
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_32: state: open
title: Add Color Scheme Controls to Sequence View
user: AABoyles
labels: [issue-type] enhancement: New feature or request
help-wanted: We could use some help on this!
code.gov: To be indexed on Code.gov
[skill-level] intermediate: Not too easy, not too tough. Just right!
[effort] medium: This could take a bit of work.
accessibility: Issues Related to 508-compliance
issue_28: state: open
title: Directional Arrows in 3D Network
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_27: state: open
title: Selectable Nodes in 3D Network
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_18: state: open
title: Ingest DOT files
user: AABoyles
labels: [issue-type] enhancement: New feature or request
issue_17: state: open
title: Bubble View using ad-hoc axis implementation
user: AABoyles
labels: [issue-type] enhancement: New feature or request
help-wanted: We could use some help on this!
code.gov: To be indexed on Code.gov
[skill-level] beginner: Start here!
[effort] small: Not a huge lift