GitHub repository: CDCgov/MicrobeTrace
Description: The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Topics: bioinformatics, cdc, epidemiology, genomic-data-analysis, genomics, genomics-visualization, hiv, network-visualization, pathogens, phylogenetic-trees, phylogenetics, phylogenomics, phylogeny, sequence-alignment

MicrobeTrace v0.9.1: tag_name: v0.9.1
MicrobeTrace v0.9.0: tag_name: v0.9.0
v0.6.1: tag_name: v0.6.1
v0.5.0: tag_name: v0.5.0
body: * Substantial file processing speedup. MicrobeTrace can now reasonably manage sessions of up to 2000 sequences of ~1000 nucleotides.
* Redesigned the timeline to show cumulative or non-cumulative epi curves instead of nodes.
* Completely redesigned the phylogenetic tree view using a new library, [TidyTree](https://github.com/CDCgov/TidyTree)
* Enriched the Waterfall view with additional metadata from the entity of interest.
* Improvements to the Map View Data, specifically around matching County data based on County names (in conjunction with State names, [of course](https://twitter.com/mrejfox/status/968200473655283712?lang=en)) or FIPS Codes.
* Created an new "Aggregate" View, which performs a rudimentary group-by and count on any variable in your dataset.
* Caching has been re-written from scratch, and should now work more in-line with our expectations. If you're connected to the internet, you get the latest versions of the files. If not, you get cached versions.
* Added several new security features.
* Reduced the repository size.