I wonder if Julia Stiles' character was killed offscreen

Rating: 7/10 (3 October 2002)

As the rogue CIA plot is collapsing in career-ending disarray, the idiot responsible for the whole mess arrives on site to do damage control. He checks in with Julia Stiles to make sure she's destroyed the evidence. We never see her again on camera. The next time we see him, he's hurriedly leaving the building (for an appointment with his executioner, as it turns out).
My thought-- I wonder if, after making sure the Stiles has destroyed the evidence, he didn't just shoot her. After all, her memory was evidence too.
I suspect Stiles' murder was filmed but left on the editing room floor. After all, we already hated the guy, so we didn't need more crimes laid on him. And Stiles' character, though part of the anti-Bourne conspiracy, was pretty much an innocent pawn. In fact, I kept expecting her to realize what her coworkers were really up to and then either confront her boss (which would then insured her getting killed) or bolt and go to warn Bourne.
My theory-- preview audiences didn't like her death so she gets to presumably live.