Patent ID: 9103820
Filing Date: 2015-08-11
Classification: A61K,A61P,G01N,Y02A

Abstract:
1. A method for screening for a tetravalent peptide which can neutralize a Shiga Toxin 2 toxin, the method comprising: (a) providing a wild-type Shiga Toxin 2 (STX2) toxin comprising a plurality of subunits and having a receptor-binding site; (b) providing a mutant of said wild type STX2 toxin having a mutation in the receptor-binding site which decreases the affinity of the mutant for a receptor of the toxin as compared to the affinity of the wild type STX2 toxin; (c) providing a first tetravalent peptide library comprising a plurality of members, each member comprising a core structure consisting of the following structure of three bound lysines, and four identical degenerate peptides having randomized amino acids in a plurality of degenerate positions bound to each terminal amino group of the core structure, wherein the degenerate peptides have a structure selected from the group consisting of: [terminal modification molecule]-Xaa-Xaa-Xaa-Xaa-A-AHA, and [terminal modification molecule]-Xaa-Xaa-Xaa-Xaa-Xaa-Xaa-Xaa-A-AHA, where the terminal modification molecule consists of one or more uncharged amino acids, Xaa is a degenerate position signifying any naturally occurring amino acid, A is alanine, and AHA is aminohexanoic acid; (d) contacting said first tetravalent peptide library with the wild type STX2 toxin and the mutant wild type STX2 toxin; (e) determining wild-type peptide motifs within the plurality of members that bind to the wild type STX2 toxin; (f) determining mutant peptide motifs within the plurality of members that bind to the mutant wild type STX2 toxin; (g) determining the amino acid sequences of the wild-type peptide motifs of step (e) and assigning first normalized values for the occurrence of each amino acid at each degenerate position in the wild-type peptide motifs so that the sum of the first normalized values at each degenerate position for all amino acids occurring in the degenerate position equals 1; (h) determining the amino acid sequences of the mutant peptide motifs of step (f) and assigning second normalized values for the occurrence of each amino acid at each degenerate position in the mutant peptide motifs so that the sum of the second normalized values at each degenerate position for all amino acids occurring in the degenerate position equals 1; (i) dividing each of the first normalized values for each of the amino acids at each position by the corresponding second normalized values and obtaining a selection ratio for each amino acid in each degenerate position of the peptide motifs of steps (e) and (f); and (j) obtaining a tetravalent peptide which can neutralize the STX2 toxin by selecting a tetravalent peptide comprising the core structure and four identical peptides bound to each terminal amino group of the core structure, wherein the four identical peptides comprise amino acids at positions corresponding to the degenerate positions of the degenerate peptides having a selection ratio greater than 1.5 as determined in step (i).