Patent ID: 9104657
Filing Date: 2015-08-11
Classification: G06F,G16B

Abstract:
1. A method for locating a genome pattern, comprising: creating, using a processor of a computer, one or more lexical annotators that each identify a sequence of nucleotides of nucleotide bases selected from A, C, G, and T; providing (1) the one or more lexical annotators, (2) one or more dictionary entries, (3) one or more previously-defined parsing rule annotators, and (4) one or more characters that each represent a nucleotide; creating a parsing rule annotator that identifies an order of and a combination of at least two elements selected from (1) the one or more lexical annotators, (2) the one or more dictionary entries, (3) the one or more previously-defined parsing rule annotators, and (4) the one or more characters that each represent a nucleotide; and creating an Unstructured Information Management Architecture (UIMA) pipeline to locate the genome pattern using the parsing rule annotator by: