Reference: A M Gravett; N Trautwein; S Stevanović; A G Dalgleish; J Copier. "Gemcitabine alters the proteasome composition and immunopeptidome of tumour cells." Oncoimmunology (2018).

Chemical type: Peptide from protein
Sequence: ADKVHLMY
Position: 594-601
Source molecule (GenBank): BAA04747.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: AEAILGQNAA
Position: 536-545
Source molecule (GenBank): NP_002936.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: AEILSEMRA
Position: 95-103
Source molecule (GenBank): AAI13747.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: AEISAMLKA
Position: 113-121
Source molecule (GenBank): NP_055844.2
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: AEQKKLEAA
Position: 84-92
Source molecule (GenBank): AAP20940.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: ASDGTVRL
Position: 13-20
Source molecule (GenBank): NP_067676.2
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: ASEIAVGHQY
Position: 135-144
Source molecule (GenBank): AAI01331.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: ATEYKNEEY
Position: 92-100
Source molecule (GenBank): NP_588611.2
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: ATLVRSPGP
Position: 96-104
Source molecule (GenBank): NP_689618.4
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: AVLELKNEL
Position: 890-898
Source molecule (GenBank): AAC05330.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEAGGRFVAF
Position: 320-329
Source molecule (GenBank): AAD08720.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEFEFLEKA
Position: 303-311
Source molecule (GenBank): BAA04747.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEGLIIHVF
Position: 88-96
Source molecule (GenBank): AAA36488.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEHEGPALY
Position: 108-116
Source molecule (GenBank): NP_002785.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEKPLVLEM
Position: 14-22
Source molecule (GenBank): NP_065111.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEKQQHIVY
Position: 68-76
Source molecule (GenBank): ABT17086.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEKSIITY
Position: 265-272
Source molecule (GenBank): AAI39789.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DELEVIHL
Position: 240-247
Source molecule (GenBank): AAO47001.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEMNVKVL
Position: 64-71
Source molecule (GenBank): AAA20643.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DENFILKH
Position: 85-92
Source molecule (GenBank): AAH07104.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEVVWVRA
Position: 56-63
Source molecule (GenBank): AAA35567.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEVYQVTVY
Position: 103-111
Source molecule (GenBank): ABT17085.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEWKAIQN
Position: 192-199
Source molecule (GenBank): AAK51130.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DEYDFYRSF
Position: 58-66
Source molecule (GenBank): NP_001001998.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: DTEFPNFKY
Position: 504-512
Source molecule (GenBank): NP_002936.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: EEEFFYEKA
Position: 252-260
Source molecule (GenBank): AAH09771.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: EEFETIERF
Position: 269-277
Source molecule (GenBank): AAB87381.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: EENPIVLEF
Position: 350-358
Source molecule (GenBank): AAH98302.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: EPAQVSLLY
Position: 977-985
Source molecule (GenBank): Q9NVE5.3
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: ETERIVTTY
Position: 455-463
Source molecule (GenBank): NP_001005361.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: FGGLGGGSVR
Position: 15-24
Source molecule (GenBank): AAA36044.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: FLLGPRLVLA
Position: 31-40
Source molecule (GenBank): AAC42003.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: GEKRFADAA
Position: 503-511
Source molecule (GenBank): NP_001290205.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: GLGGGSVRFG
Position: 17-26
Source molecule (GenBank): AAA36044.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: GSDDGTVKL
Position: 111-119
Source molecule (GenBank): AAC64084.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: HSDPSILGY
Position: 731-739
Source molecule (GenBank): AAI29992.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: ILIDWLVQV
Position: 204-212
Source molecule (GenBank): NP_114172.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: KEMPVKVEA
Position: 305-313
Source molecule (GenBank): NP_001177924.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: KIFEMGPVFTL
Position: 217-227
Source molecule (GenBank): BAW34844.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: KLLEVQILE
Position: 1083-1091
Source molecule (GenBank): NP_852118.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: KMDASLGNLFA
Position: 30-40
Source molecule (GenBank): NP_055703.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: KTDKTLVLL
Position: 105-113
Source molecule (GenBank): NP_005013.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: LEAHRDAPGA
Position: 655-664
Source molecule (GenBank): NP_001229828.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: LLYESPERY
Position: 684-692
Source molecule (GenBank): AAC12906.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: LTDDDLLRY
Position: 569-577
Source molecule (GenBank): Q04446.3
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: LTEIKGSVY
Position: 139-147
Source molecule (GenBank): ALQ34352.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: MEQVIFKY
Position: 42-49
Source molecule (GenBank): NP_001264069.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: MEVEVDGQKF
Position: 561-570
Source molecule (GenBank): NP_001131145.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: NEAIMHQY
Position: 365-372
Source molecule (GenBank): NP_001136175.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: NEDRISTTF
Position: 647-655
Source molecule (GenBank): NP_006613.2
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: NETDILSQY
Position: 112-120
Source molecule (GenBank): AAH23656.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: NEVPVKEL
Position: 28-35
Source molecule (GenBank): NP_060979.2
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: NEYLNPEL
Position: 115-122
Source molecule (GenBank): NP_060624.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: NLAEKLIGV
Position: 190-198
Source molecule (GenBank): NP_065069.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: NQVIFPVSY
Position: 23-31
Source molecule (GenBank): NP_079422.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: PDPIRGFGS
Position: 1445-1453
Source molecule (GenBank): AAD47250.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: QAEFQILKA
Position: 836-844
Source molecule (GenBank): NP_001078823.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: QMDGPLPLHY
Position: 41-50
Source molecule (GenBank): NP_001186863.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: RTLAEIAKV
Position: 30-38
Source molecule (GenBank): NP_001138882.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SEAEIFYNA
Position: 470-478
Source molecule (GenBank): NP_009114.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SEIELFRVF
Position: 761-769
Source molecule (GenBank): AAI12892.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SEIYIHGL
Position: 67-74
Source molecule (GenBank): NP_005828.2
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SEQETLVRP
Position: 22-30
Source molecule (GenBank): ABT17086.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SEYQWITSP
Position: 318-326
Source molecule (GenBank): NP_001317620.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SLAELVHAV
Position: 129-137
Source molecule (GenBank): NP_001186863.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SLLPHETLL
Position: 166-174
Source molecule (GenBank): NP_060914.2
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SQIEADFRL
Position: 10-18
Source molecule (GenBank): AAA61207.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SSDRHLTQY
Position: 1545-1553
Source molecule (GenBank): AAB87381.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: SSEKGGMNGY
Position: 123-132
Source molecule (GenBank): NP_075559.2
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: TELLIRKL
Position: 59-66
Source molecule (GenBank): NP_002098.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: TLIDLPGITKV
Position: 133-143
Source molecule (GenBank): NP_001005361.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: TLTEEGVIKV
Position: 322-331
Source molecule (GenBank): AAD09830.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: TLWVDPYEV
Position: 101-109
Source molecule (GenBank): NP_006754.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: TVDDPYATFV
Position: 63-72
Source molecule (GenBank): NP_005498.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: TVDPASLWEY
Position: 484-493
Source molecule (GenBank): AAH06304.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: VEHKVETF
Position: 164-171
Source molecule (GenBank): AAB00969.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: VEIITKEF
Position: 406-413
Source molecule (GenBank): AAH33103.2
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: VGDPNSFLNY
Position: 289-298
Source molecule (GenBank): AAF67480.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: VKLAKAGKN
Position: 2-10
Source molecule (GenBank): AAA59954.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: VMAPRTLVL
Position: 3-11
Source molecule (GenBank): BAW27647.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: VVEQLKDWLY
Position: 97-106
Source molecule (GenBank): ALQ33650.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: YLDPRITVA
Position: 723-731
Source molecule (GenBank): AAA61207.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: YTMKEVLFY
Position: 48-56
Source molecule (GenBank): ABT17086.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: YTSGPGSRIS
Position: 25-34
Source molecule (GenBank): AAA51542.1
Assay category: MhcLigandElution
Result: Positive

Chemical type: Peptide from protein
Sequence: YTSGPGSRISS
Position: 25-35
Source molecule (GenBank): AAA51542.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Proliferating cell nuclear antigen (241-249)
Chemical type: Peptide from protein
Sequence: IADMGHLKY
Position: 241-249
Source molecule (GenBank): P12004.1
Assay category: MhcLigandElution
Result: Positive

Epitope: S-formylglutathione hydrolase (109-118)
Chemical type: Peptide from protein
Sequence: ATEDPWKTNY
Position: 109-118
Source molecule (GenBank): P10768.2
Assay category: MhcLigandElution
Result: Positive

Epitope: TIM50 (207-216)
Chemical type: Peptide from protein
Sequence: SVDPHGFISY
Position: 207-216
Source molecule (GenBank): Q3ZCQ8.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Proline-serine-threonine phosphatase-interacting protein 2 (154-162)
Chemical type: Peptide from protein
Sequence: AEQAVSRSA
Position: 154-162
Source molecule (GenBank): Q9H939.4
Assay category: MhcLigandElution
Result: Positive

Epitope: Plectin (1566-1574)
Chemical type: Peptide from protein
Sequence: SEAEIQAKA
Position: 1566-1574
Source molecule (GenBank): Q15149.3
Assay category: MhcLigandElution
Result: Positive

Epitope: Nuclear pore membrane glycoprotein 210 (1259-1268)
Chemical type: Peptide from protein
Sequence: AVDPTSGQLY
Position: 1259-1268
Source molecule (GenBank): Q8TEM1.3
Assay category: MhcLigandElution
Result: Positive

Epitope: elongation factor 2 (662-671)
Chemical type: Peptide from protein
Sequence: LTDITKGVQY
Position: 662-671
Source molecule (GenBank): NP_001952.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Thioredoxin-related transmembrane protein 2 (199-206)
Chemical type: Peptide from protein
Sequence: YTDVSTRY
Position: 199-206
Source molecule (GenBank): Q9Y320.1
Assay category: MhcLigandElution
Result: Positive

Epitope: ribosomal protein L31, isoform CRA_a (18-25)
Chemical type: Peptide from protein
Sequence: NEVVTREY
Position: 18-25
Source molecule (GenBank): EAX01827.1
Assay category: MhcLigandElution
Result: Positive

Epitope: keratin, type I cytoskeletal 19 (355-363)
Chemical type: Peptide from protein
Sequence: DSERQNQEY
Position: 355-363
Source molecule (GenBank): NP_002267.2
Assay category: MhcLigandElution
Result: Positive

Epitope: DNA mismatch repair protein Msh6 (469-478)
Chemical type: Peptide from protein
Sequence: YSDSLVQKGY
Position: 469-478
Source molecule (GenBank): P52701.2
Assay category: MhcLigandElution
Result: Positive

Epitope: WD repeat domain 34 (412-420)
Chemical type: Peptide from protein
Sequence: GTDGHVHLY
Position: 412-420
Source molecule (GenBank): AAH11874.2
Assay category: MhcLigandElution
Result: Positive

Epitope: RNA-binding protein 4 isoform 1 (186-194)
Chemical type: Peptide from protein
Sequence: LTEQYNEQY
Position: 186-194
Source molecule (GenBank): NP_002887.2
Assay category: MhcLigandElution
Result: Positive

Epitope: YY1-associated protein 1 (417-426)
Chemical type: Peptide from protein
Sequence: NSELGSETRY
Position: 417-426
Source molecule (GenBank): Q9H869.2
Assay category: MhcLigandElution
Result: Positive

Epitope: FLNA protein (716-724)
Chemical type: Peptide from protein
Sequence: VTEIDQDKY
Position: 716-724
Source molecule (GenBank): Q6NXF2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: BCLAF1 protein (Hypothetical protein) (430-438)
Chemical type: Peptide from protein
Sequence: NTEEEGLKY
Position: 430-438
Source molecule (GenBank): Q6DCA8.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Melanoma-associated antigen B2 (231-240)
Chemical type: Peptide from protein
Sequence: GVYDGEEHSV
Position: 231-240
Source molecule (GenBank): O15479.3
Assay category: MhcLigandElution
Result: Positive

Epitope: Putative ATP-dependent RNA helicase DHX57 (1207-1215)
Chemical type: Peptide from protein
Sequence: AENPKLISA
Position: 1207-1215
Source molecule (GenBank): Q6P158.2
Assay category: MhcLigandElution
Result: Positive

Epitope: RNA-binding protein FUS isoform 1 (44-55)
Chemical type: Peptide from protein
Sequence: STDTSGYGQSSY
Position: 44-55
Source molecule (GenBank): NP_004951.1
Assay category: MhcLigandElution
Result: Positive

Epitope: 40S ribosomal protein S13 (29-38)
Chemical type: Peptide from protein
Sequence: TSDDVKEQIY
Position: 29-38
Source molecule (GenBank): NP_001008.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Melanoma-associated antigen D1 (37-45)
Chemical type: Peptide from protein
Sequence: SEAPPTNQA
Position: 37-45
Source molecule (GenBank): Q9Y5V3.3
Assay category: MhcLigandElution
Result: Positive

Epitope: Stomatin-like protein 2, mitochondrial (255-263)
Chemical type: Peptide from protein
Sequence: AEAIRILAA
Position: 255-263
Source molecule (GenBank): Q9UJZ1.1
Assay category: MhcLigandElution
Result: Positive

Epitope: proteasome subunit beta type-3 (55-63)
Chemical type: Peptide from protein
Sequence: GLATDVQTV
Position: 55-63
Source molecule (GenBank): NP_002786.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Euk translation initiation factor 3 subunit C-like protein (835-843)
Chemical type: Peptide from protein
Sequence: SLDQPTQTV
Position: 835-843
Source molecule (GenBank): B5ME19.1
Assay category: MhcLigandElution
Result: Positive

Epitope: CKS2 (11-19)
Chemical type: Peptide from protein
Sequence: KYFDEHYEY
Position: 11-19
Source molecule (GenBank): CAG28558.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Keratin, type II cytoskeletal 8 (276-284)
Chemical type: Peptide from protein
Sequence: AEAESMYQI
Position: 276-284
Source molecule (GenBank): P05787.7
Assay category: MhcLigandElution
Result: Positive

Epitope: 40S ribosomal protein SA (149-156)
Chemical type: Peptide from protein
Sequence: NTDSPLRY
Position: 149-156
Source molecule (GenBank): P08865.4
Assay category: MhcLigandElution
Result: Positive