Reference: Lotta Holm; Kristina Frech; Balik Dzhambazov; Rikard Holmdahl; Jan Kihlberg; Anna Linusson. "Quantitative structure-activity relationship of peptides binding to the class II major histocompatibility complex molecule Aq associated with autoimmune arthritis." Journal of medicinal chemistry (2007).

Epitope: CII 260-267
Chemical type: Peptide from protein
Sequence: IAGFKGEQ
Position: 392-399
Source molecule (GenBank): P05539.2
Assay category: TCell
Result: Positive-Low
MHC allele types: 111
Host: M 
Cell type: T cell hybridoma
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: CII 260-267
Chemical type: Peptide from protein
Sequence: IAGFKGEQ
Position: 392-399
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-High

Epitope: Analog 1
Chemical type: Peptide, no natural source
Sequence: IMMFKMSRK
Assay category: MhcBinding
Result: Positive-Low

Epitope: Analog 2
Chemical type: Peptide, no natural source
Sequence: IMMFKVRRK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 3
Chemical type: Peptide, no natural source
Sequence: IMMFKTDVK
Assay category: MhcBinding
Result: Positive-Low

Epitope: Analog 4
Chemical type: Peptide, no natural source
Sequence: IMTFKMYVK
Assay category: MhcBinding
Result: Positive-Low

Epitope: Analog 5
Chemical type: Peptide, no natural source
Sequence: IMTFKAVYK
Assay category: MhcBinding
Result: Positive-High

Epitope: Analog 6
Chemical type: Peptide, no natural source
Sequence: IMSFKTRDK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 8
Chemical type: Peptide, no natural source
Sequence: IVAFKTVVK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 10
Chemical type: Peptide, no natural source
Sequence: IVSFKAYRK
Assay category: MhcBinding
Result: Positive-High

Epitope: Analog 11
Chemical type: Peptide, no natural source
Sequence: IAMFKMRSK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 12
Chemical type: Peptide, no natural source
Sequence: IAMFKSVNK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 13
Chemical type: Peptide, no natural source
Sequence: IAVFKMVRK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 14
Chemical type: Peptide, no natural source
Sequence: IAAFKANSK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 15
Chemical type: Peptide, no natural source
Sequence: IATFKTYYK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 16
Chemical type: Peptide, no natural source
Sequence: ITMFKMDRK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 17
Chemical type: Peptide, no natural source
Sequence: ITMFKVVYK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 18
Chemical type: Peptide, no natural source
Sequence: ITVFKVYN
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 19
Chemical type: Peptide, no natural source
Sequence: ITTFKSSSK
Assay category: MhcBinding
Result: Positive-Low

Epitope: Analog 20
Chemical type: Peptide, no natural source
Sequence: ITSFKMRYK
Assay category: MhcBinding
Result: Positive-High

Epitope: Analog 21
Chemical type: Peptide, no natural source
Sequence: ISAFKTNRK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog 22
Chemical type: Peptide, no natural source
Sequence: ITMFKMDRK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog V1
Chemical type: Peptide, no natural source
Sequence: ITAFKIRWK
Assay category: MhcBinding
Result: Positive-High

Epitope: Analog V2
Chemical type: Peptide, no natural source
Sequence: IIGFKARMK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog V3
Chemical type: Peptide, no natural source
Sequence: IIQFKTLRK
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Analog V4
Chemical type: Peptide, no natural source
Sequence: ITNFKGSRK
Assay category: MhcBinding
Result: Positive-Low

Epitope: Analog V5
Chemical type: Peptide, no natural source
Sequence: ITMFKEPGK
Assay category: MhcBinding
Result: Negative

Epitope: Analog V6
Chemical type: Peptide, no natural source
Sequence: IQMFKRAGK
Assay category: MhcBinding
Result: Negative