Reference: Stacy A Malaker; Michael J Ferracane; Florence R Depontieu; Angela L Zarling; Jeffrey Shabanowitz; Dina L Bai; Suzanne L Topalian; Victor H Engelhard; Donald F Hunt. "Identification and Characterization of Complex Glycosylated Peptides Presented by the MHC Class II Processing Pathway in Melanoma." Journal of proteome research (2017).

Epitope: alpha-2-Macroglobulin 859-869
Chemical type: Peptide from protein
Sequence: AVTPKSLGNVN
Position: 859-869
Source molecule (GenBank): P01023.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: cation-independent Mannose-6-phosphate receptor 1231-1248
Chemical type: Peptide from protein
Sequence: DPRHGNLYDLKPLGLNDT
Position: 1231-1248
Source molecule (GenBank): P11717.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: CD109 antigen 67-82
Chemical type: Peptide from protein
Sequence: SNLTVSVLEAEGVFEK
Position: 67-82
Source molecule (GenBank): Q6YHK3.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: CD97 antigen 94-108
Chemical type: Peptide from protein
Sequence: SPGYEPVSGAKTFKN
Position: 94-108
Source molecule (GenBank): P48960.4
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: CD97 antigen 94-109
Chemical type: Peptide from protein
Sequence: SPGYEPVSGAKTFKNE
Position: 94-109
Source molecule (GenBank): P48960.4
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: CD97 antigen 94-110
Chemical type: Peptide from protein
Sequence: SPGYEPVSGAKTFKNES
Position: 94-110
Source molecule (GenBank): P48960.4
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Cholinesterase 32-54
Chemical type: Peptide from protein
Sequence: IIIATKNGKVRGMNLTVFGGTVT
Position: 32-54
Source molecule (GenBank): P06276.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: Cholinesterase 32-56
Chemical type: Peptide from protein
Sequence: IIIATKNGKVRGMNLTVFGGTVTAF
Position: 32-56
Source molecule (GenBank): P06276.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: Collagen .-1(XVIII) chain 1555-1570
Chemical type: Peptide from protein
Sequence: HSSYVHLRPARPTSPP
Position: 1555-1570
Source molecule (GenBank): P39060.5
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: EF-hand calcium-binding domain-containing 334-349
Chemical type: Peptide from protein
Sequence: SATLKRQSLDQVTNRT
Position: 334-349
Source molecule (GenBank): O75071.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: Fibronectin 2006-2022
Chemical type: Peptide from protein
Sequence: HGPEILDVPSTVQKTP
Position: 2006-2021
Source molecule (GenBank): P02751.4
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: Glia-derived Nexin 106-120
Chemical type: Peptide from protein
Sequence: DIVTVANAVFVKNAS
Position: 106-120
Source molecule (GenBank): P07093.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Glia-derived Nexin 105-120
Chemical type: Peptide from protein
Sequence: KDIVTVANAVFVKNAS
Position: 105-120
Source molecule (GenBank): P07093.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 319 437

Epitope: Glia-derived Nexin 105-121
Chemical type: Peptide from protein
Sequence: KDIVTVANAVFVKNASE
Position: 105-121
Source molecule (GenBank): P07093.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Glia-derived Nexin 104-120
Chemical type: Peptide from protein
Sequence: NKDIVTVANAVFVKNAS
Position: 104-120
Source molecule (GenBank): P07093.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Glia-derived Nexin 103-120
Chemical type: Peptide from protein
Sequence: KNKDIVTVANAVFVKNAS
Position: 103-120
Source molecule (GenBank): P07093.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Glia-derived Nexin 103-121
Chemical type: Peptide from protein
Sequence: KNKDIVTVANAVFVKNASE
Position: 103-121
Source molecule (GenBank): P07093.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: Glia-derived Nexin 102-120
Chemical type: Peptide from protein
Sequence: KKNKDIVTVANAVFVKNAS
Position: 102-120
Source molecule (GenBank): P07093.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Glia-derived Nexin 102-121
Chemical type: Peptide from protein
Sequence: KKNKDIVTVANAVFVKNASE
Position: 102-121
Source molecule (GenBank): P07093.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: HLA class II DP alpha 1 chain 91-112
Chemical type: Peptide from protein
Sequence: LANIAILNNNLNTLIQRSNHTQ
Position: 91-112
Source molecule (GenBank): P20036.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: HLA class II DP alpha 1 chain 91-111
Chemical type: Peptide from protein
Sequence: LANIAILNNNLNTLIQRSNHT
Position: 91-111
Source molecule (GenBank): P20036.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: HLA class II DP alpha 1 chain 94-112
Chemical type: Peptide from protein
Sequence: IAILNNNLNTLIQRSNHTQ
Position: 94-112
Source molecule (GenBank): P20036.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: HLA class II DP alpha 1 chain 94-111
Chemical type: Peptide from protein
Sequence: IAILNNNLNTLIQRSNHT
Position: 94-111
Source molecule (GenBank): P20036.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: Intercellular adhesion molecule 385-401
Chemical type: Peptide from protein
Sequence: NQTRELRVLYGPRLDER
Position: 385-401
Source molecule (GenBank): P05362.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 52 407

Epitope: Intercellular adhesion molecule 384-401
Chemical type: Peptide from protein
Sequence: KNQTRELRVLYGPRLDER
Position: 384-401
Source molecule (GenBank): P05362.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 52 407

Epitope: Intercellular adhesion molecule 384-402
Chemical type: Peptide from protein
Sequence: KNQTRELRVLYGPRLDERD
Position: 384-402
Source molecule (GenBank): P05362.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 52 407

Epitope: Intercellular adhesion molecule 382-402
Chemical type: Peptide from protein
Sequence: IHKNQTRELRVLYGPRLDERD
Position: 382-402
Source molecule (GenBank): P05362.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 52 407

Epitope: Interleukin 6 receptor subunit beta 208-227
Chemical type: Peptide from protein
Sequence: TSDHINFDPVYKVKPNPPHN
Position: 208-227
Source molecule (GenBank): P40189.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 437

Epitope: Laminin subunit gamma-1 1172-1189
Chemical type: Peptide from protein
Sequence: DPNNMTLLAEEARKLAER
Position: 1172-1189
Source molecule (GenBank): P11047.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Laminin subunit gamma-2 1172-1190
Chemical type: Peptide from protein
Sequence: DPNNMTLLAEEARKLAERH
Position: 1172-1190
Source molecule (GenBank): P11047.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: L-Dopachrome tautomerase 160-175
Chemical type: Peptide from protein
Sequence: TQHWLGLLGPNGTQPQ
Position: 160-175
Source molecule (GenBank): P40126.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: L-Dopachrome tautomerase 228-241
Chemical type: Peptide from protein
Sequence: ERDLQRLIGNESFA
Position: 228-241
Source molecule (GenBank): P40126.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: L-Dopachrome tautomerase 228-244
Chemical type: Peptide from protein
Sequence: ERDLQRLIGNESFALPY
Position: 228-244
Source molecule (GenBank): P40126.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Lysosome membrane protein 2 213-224
Chemical type: Peptide from protein
Sequence: YVFLTGEDSYLN
Position: 213-224
Source molecule (GenBank): Q14108.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Lysosome-associated membrane glycoprotein 1 246-263
Chemical type: Peptide from protein
Sequence: RKDNTTVTRLLNINPNKT
Position: 246-263
Source molecule (GenBank): P11279.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: Lysosome-associated membrane glycoprotein 4 321-337
Chemical type: Peptide from protein
Sequence: ANGSLRALQATVGNSYK
Position: 321-337
Source molecule (GenBank): P11279.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: N-Acetylglucosamine-6-sulfatase 180-196
Chemical type: Peptide from protein
Sequence: KYYNYTLSINGKARKHG
Position: 180-196
Source molecule (GenBank): P15586.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 437

Epitope: N-Acetylglucosamine-6-sulfatase 180-195
Chemical type: Peptide from protein
Sequence: KYYNYTLSINGKARKH
Position: 180-195
Source molecule (GenBank): P15586.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 437

Epitope: N-Acetylglucosamine-6-sulfatase 181-195
Chemical type: Peptide from protein
Sequence: YYNYTLSINGKARKH
Position: 181-195
Source molecule (GenBank): P15586.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 437

Epitope: N-Acetylglucosamine-6-sulfatase 180-193
Chemical type: Peptide from protein
Sequence: KYYNYTLSINGKAR
Position: 180-193
Source molecule (GenBank): P15586.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 437

Epitope: Neural cell adhesion molecule L1-like protein 79-93
Chemical type: Peptide from protein
Sequence: TDHRIIPSNNSGTFR
Position: 79-93
Source molecule (GenBank): O00533.4
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52

Epitope: Neurosecretory protein VGF 85-97
Chemical type: Peptide from protein
Sequence: VLLQALDRPASPP
Position: 85-97
Source molecule (GenBank): O15240.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52

Epitope: Neurosecretory protein VGF 85-98
Chemical type: Peptide from protein
Sequence: VLLQALDRPASPPA
Position: 85-98
Source molecule (GenBank): O15240.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52

Epitope: Platelet glycoprotein 4 221-235
Chemical type: Peptide from protein
Sequence: ISKVAIIDTYKGKRN
Position: 221-235
Source molecule (GenBank): P16671.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52

Epitope: Prosaposin 214-229
Chemical type: Peptide from protein
Sequence: TNSTFVQALVEHVKEE
Position: 214-229
Source molecule (GenBank): P07602.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52

Epitope: Prosaposin 213-228
Chemical type: Peptide from protein
Sequence: RTNSTFVQALVEHVKE
Position: 213-228
Source molecule (GenBank): P07602.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52

Epitope: Prosaposin 213-229
Chemical type: Peptide from protein
Sequence: RTNSTFVQALVEHVKEE
Position: 213-229
Source molecule (GenBank): P07602.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52

Epitope: Prosaposin 212-228
Chemical type: Peptide from protein
Sequence: VRTNSTFVQALVEHVKE
Position: 212-228
Source molecule (GenBank): P07602.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Prosaposin 212-229
Chemical type: Peptide from protein
Sequence: VRTNSTFVQALVEHVKEE
Position: 212-229
Source molecule (GenBank): P07602.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Sialomucin core protein 24 (MUC24) 125-137
Chemical type: Peptide from protein
Sequence: KPTVQPSPSTTSK
Position: 125-137
Source molecule (GenBank): Q04900.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52

Epitope: Vascular endothelial growth factor receptor 1 236-251
Chemical type: Peptide from protein
Sequence: TPRPVKLLRGHTLVLN
Position: 236-251
Source molecule (GenBank): P17948.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52

Epitope: apolipoprotein B (3267-3283)
Chemical type: Peptide from protein
Sequence: KSSVITLNTNVGLYNQS
Position: 3267-3283
Source molecule (GenBank): DAA24500.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: Apolipoprotein D (76-98)
Chemical type: Peptide from protein
Sequence: VINKELRADGTVNQIEGEATPEN
Position: 76-98
Source molecule (GenBank): NP_001069769.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: Apolipoprotein D (77-98)
Chemical type: Peptide from protein
Sequence: INKELRADGTVNQIEGEATPEN
Position: 77-98
Source molecule (GenBank): NP_001069769.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: hemopexin (165-179)
Chemical type: Peptide from protein
Sequence: GNHTWFWDFSTKTIK
Position: 165-179
Source molecule (GenBank): NP_001029784.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 437

Epitope: IgG Heavy Chain Constant region (199-213)
Chemical type: Peptide from protein
Sequence: FNSTYRVVSALRIQH
Position: 199-213
Source molecule (GenBank): AAC48761.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: IgG Heavy Chain Constant region (199-214)
Chemical type: Peptide from protein
Sequence: FNSTYRVVSALRIQHQ
Position: 199-214
Source molecule (GenBank): AAC48761.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: IgG3
Chemical type: Peptide from protein
Sequence: VHTAQTKPREQQYNSTLR
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: IgG3
Chemical type: Peptide from protein
Sequence: IDVHTAQTKPREQQYNSTLR
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52 407 365

Epitope: IgG4
Chemical type: Peptide from protein
Sequence: EWMGVISPRDGSTSSA
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: Inter-alpha-trypsin inhibitor heavy chain H2 (673-690)
Chemical type: Peptide from protein
Sequence: NPSPAPVLPMPAVGAQVL
Position: 671-688
Source molecule (GenBank): DAA23635.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: LAMP1 148-165
Chemical type: Peptide from protein
Sequence: DIDKKYRCVSGTQVHMNN
Position: 148-165
Source molecule (GenBank): P11279.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 52

Epitope: LAMP1 149-165
Chemical type: Peptide from protein
Sequence: IDKKYRCVSGTQVHMNN
Position: 149-165
Source molecule (GenBank): P11279.3
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 365 407 52