Reference: Haley L Peters; Satyendra C Tripathi; Celine Kerros; Hiroyuki Katayama; Haven R Garber; Lisa S St John; Lorenzo Federico; Ismail M Meraz; Jack A Roth; Boris Sepesi; Mourad Majidi; Kathryn Ruisaard; Karen Clise-Dwyer; Jason Roszik; Don L Gibbons; John V Heymach; Stephen G Swisher; Chantale Bernatchez; Gheath Alatrash; Samir Hanash; Jeffrey J Molldrem. "Serine Proteases Enhance Immunogenic Antigen Presentation on Lung Cancer Cells." Cancer immunology research (2017).

Epitope: NEpep1
Chemical type: Peptide from protein
Sequence: LLSAVLPSV
Position: 539-547
Source molecule (GenBank): Q9BTE3.2
Assay category: TCell
Result: Negative
Cell type: lymphocyte
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: NEpep1
Chemical type: Peptide from protein
Sequence: LLSAVLPSV
Position: 539-547
Source molecule (GenBank): Q9BTE3.2
Assay category: TCell
Result: Positive
Cell type: lymphocyte
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: NEpep1
Chemical type: Peptide from protein
Sequence: LLSAVLPSV
Position: 539-547
Source molecule (GenBank): Q9BTE3.2
Assay category: TCell
Result: Positive-High
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NEpep1
Chemical type: Peptide from protein
Sequence: LLSAVLPSV
Position: 539-547
Source molecule (GenBank): Q9BTE3.2
Assay category: MhcLigandElution
Result: Positive

Epitope: NEpep1
Chemical type: Peptide from protein
Sequence: LLSAVLPSV
Position: 539-547
Source molecule (GenBank): Q9BTE3.2
Assay category: MhcBinding
Result: Positive

Epitope: NEpep2
Chemical type: Peptide from protein
Sequence: ALAGLSPV
Position: 220-227
Source molecule (GenBank): Q15911.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NEpep2
Chemical type: Peptide from protein
Sequence: ALAGLSPV
Position: 220-227
Source molecule (GenBank): Q15911.2
Assay category: MhcLigandElution
Result: Positive

Epitope: NEpep2
Chemical type: Peptide from protein
Sequence: ALAGLSPV
Position: 220-227
Source molecule (GenBank): Q15911.2
Assay category: MhcBinding
Result: Positive

Epitope: NEpep3
Chemical type: Peptide from protein
Sequence: ALIGGPPV
Position: 2058-2065
Source molecule (GenBank): BAH10664.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NEpep3
Chemical type: Peptide from protein
Sequence: ALIGGPPV
Position: 2058-2065
Source molecule (GenBank): BAH10664.1
Assay category: TCell
Result: Positive
Cell type: lymphocyte
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: NEpep3
Chemical type: Peptide from protein
Sequence: ALIGGPPV
Position: 2058-2065
Source molecule (GenBank): BAH10664.1
Assay category: TCell
Result: Positive
Cell type: lymphocyte
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: NEpep3
Chemical type: Peptide from protein
Sequence: ALIGGPPV
Position: 2058-2065
Source molecule (GenBank): BAH10664.1
Assay category: MhcLigandElution
Result: Positive

Epitope: NEpep3
Chemical type: Peptide from protein
Sequence: ALIGGPPV
Position: 2058-2065
Source molecule (GenBank): BAH10664.1
Assay category: MhcBinding
Result: Positive

Epitope: NEpep5
Chemical type: Peptide from protein
Sequence: SLLGLALLAV
Position: 784-793
Source molecule (GenBank): NP_001157394.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NEpep5
Chemical type: Peptide from protein
Sequence: SLLGLALLAV
Position: 784-793
Source molecule (GenBank): NP_001157394.1
Assay category: MhcLigandElution
Result: Positive

Epitope: NEpep5
Chemical type: Peptide from protein
Sequence: SLLGLALLAV
Position: 784-793
Source molecule (GenBank): NP_001157394.1
Assay category: MhcBinding
Result: Positive

Epitope: NEpep6
Chemical type: Peptide from protein
Sequence: LLAGPPGV
Position: 238-245
Source molecule (GenBank): Q9BVQ7.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NEpep6
Chemical type: Peptide from protein
Sequence: LLAGPPGV
Position: 238-245
Source molecule (GenBank): Q9BVQ7.2
Assay category: MhcLigandElution
Result: Positive

Epitope: NEpep6
Chemical type: Peptide from protein
Sequence: LLAGPPGV
Position: 238-245
Source molecule (GenBank): Q9BVQ7.2
Assay category: MhcBinding
Result: Positive

Epitope: NEpep7
Chemical type: Peptide from protein
Sequence: ALAAFLGL
Position: 158-165
Source molecule (GenBank): AAB53837.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NEpep7
Chemical type: Peptide from protein
Sequence: ALAAFLGL
Position: 158-165
Source molecule (GenBank): AAB53837.1
Assay category: MhcLigandElution
Result: Positive

Epitope: NEpep7
Chemical type: Peptide from protein
Sequence: ALAAFLGL
Position: 158-165
Source molecule (GenBank): AAB53837.1
Assay category: MhcBinding
Result: Positive

Epitope: NEpep8
Chemical type: Peptide from protein
Sequence: LLGPAPGV
Position: 107-114
Source molecule (GenBank): BAD92714.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NEpep8
Chemical type: Peptide from protein
Sequence: LLGPAPGV
Position: 107-114
Source molecule (GenBank): BAD92714.1
Assay category: MhcLigandElution
Result: Positive

Epitope: NEpep8
Chemical type: Peptide from protein
Sequence: LLGPAPGV
Position: 107-114
Source molecule (GenBank): BAD92714.1
Assay category: MhcBinding
Result: Positive

Epitope: NEpep9
Chemical type: Peptide from protein
Sequence: LLLRSPAGV
Position: 13-21
Source molecule (GenBank): O94925.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NEpep9
Chemical type: Peptide from protein
Sequence: LLLRSPAGV
Position: 13-21
Source molecule (GenBank): O94925.1
Assay category: MhcLigandElution
Result: Positive

Epitope: NEpep9
Chemical type: Peptide from protein
Sequence: LLLRSPAGV
Position: 13-21
Source molecule (GenBank): O94925.1
Assay category: MhcBinding
Result: Positive

Epitope: NEpep10
Chemical type: Peptide from protein
Sequence: GLGPVAAV
Position: 265-272
Source molecule (GenBank): NP_443072.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NEpep10
Chemical type: Peptide from protein
Sequence: GLGPVAAV
Position: 265-272
Source molecule (GenBank): NP_443072.3
Assay category: MhcLigandElution
Result: Positive

Epitope: NEpep10
Chemical type: Peptide from protein
Sequence: GLGPVAAV
Position: 265-272
Source molecule (GenBank): NP_443072.3
Assay category: MhcBinding
Result: Positive

Epitope: P3pep1
Chemical type: Peptide from protein
Sequence: LLLPALAGA
Position: 499-507
Source molecule (GenBank): AAK49393.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep1
Chemical type: Peptide from protein
Sequence: LLLPALAGA
Position: 499-507
Source molecule (GenBank): AAK49393.1
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep1
Chemical type: Peptide from protein
Sequence: LLLPALAGA
Position: 499-507
Source molecule (GenBank): AAK49393.1
Assay category: MhcBinding
Result: Positive

Epitope: P3pep2
Chemical type: Peptide from protein
Sequence: ALAAALVV
Position: 117-124
Source molecule (GenBank): Q9H078.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep2
Chemical type: Peptide from protein
Sequence: ALAAALVV
Position: 117-124
Source molecule (GenBank): Q9H078.1
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep2
Chemical type: Peptide from protein
Sequence: ALAAALVV
Position: 117-124
Source molecule (GenBank): Q9H078.1
Assay category: MhcBinding
Result: Positive

Epitope: P3pep3
Chemical type: Peptide from protein
Sequence: LLWRKLLWHQV
Position: 480-490
Source molecule (GenBank): Q9H598.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep3
Chemical type: Peptide from protein
Sequence: LLWRKLLWHQV
Position: 480-490
Source molecule (GenBank): Q9H598.2
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep3
Chemical type: Peptide from protein
Sequence: LLWRKLLWHQV
Position: 480-490
Source molecule (GenBank): Q9H598.2
Assay category: MhcBinding
Result: Positive

Epitope: P3pep4
Chemical type: Peptide from protein
Sequence: ALLGIPKV
Position: 636-643
Source molecule (GenBank): Q8TAM1.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep4
Chemical type: Peptide from protein
Sequence: ALLGIPKV
Position: 636-643
Source molecule (GenBank): Q8TAM1.2
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep4
Chemical type: Peptide from protein
Sequence: ALLGIPKV
Position: 636-643
Source molecule (GenBank): Q8TAM1.2
Assay category: MhcBinding
Result: Positive

Epitope: P3pep5
Chemical type: Peptide from protein
Sequence: GLLAIVKV
Position: 100-107
Source molecule (GenBank): Q8WU58.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep5
Chemical type: Peptide from protein
Sequence: GLLAIVKV
Position: 100-107
Source molecule (GenBank): Q8WU58.1
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep5
Chemical type: Peptide from protein
Sequence: GLLAIVKV
Position: 100-107
Source molecule (GenBank): Q8WU58.1
Assay category: MhcBinding
Result: Positive

Epitope: P3pep6
Chemical type: Peptide from protein
Sequence: LLFPYILPPKA
Position: 250-260
Source molecule (GenBank): Q9Y5W7.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep6
Chemical type: Peptide from protein
Sequence: LLFPYILPPKA
Position: 250-260
Source molecule (GenBank): Q9Y5W7.3
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep6
Chemical type: Peptide from protein
Sequence: LLFPYILPPKA
Position: 250-260
Source molecule (GenBank): Q9Y5W7.3
Assay category: MhcBinding
Result: Positive

Epitope: P3pep7
Chemical type: Peptide from protein
Sequence: ALVSIIKV
Position: 412-419
Source molecule (GenBank): Q8N6Y1.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep7
Chemical type: Peptide from protein
Sequence: ALVSIIKV
Position: 412-419
Source molecule (GenBank): Q8N6Y1.2
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep7
Chemical type: Peptide from protein
Sequence: ALVSIIKV
Position: 412-419
Source molecule (GenBank): Q8N6Y1.2
Assay category: MhcBinding
Result: Positive

Epitope: P3pep8
Chemical type: Peptide from protein
Sequence: LLAAVAALL
Position: 159-167
Source molecule (GenBank): Q96GZ6.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep8
Chemical type: Peptide from protein
Sequence: LLAAVAALL
Position: 159-167
Source molecule (GenBank): Q96GZ6.2
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep8
Chemical type: Peptide from protein
Sequence: LLAAVAALL
Position: 159-167
Source molecule (GenBank): Q96GZ6.2
Assay category: MhcBinding
Result: Positive

Epitope: P3pep9
Chemical type: Peptide from protein
Sequence: ALISKNPV
Position: 14-21
Source molecule (GenBank): Q86W34.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep9
Chemical type: Peptide from protein
Sequence: ALISKNPV
Position: 14-21
Source molecule (GenBank): Q86W34.2
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep9
Chemical type: Peptide from protein
Sequence: ALISKNPV
Position: 14-21
Source molecule (GenBank): Q86W34.2
Assay category: MhcBinding
Result: Positive

Epitope: P3pep10
Chemical type: Peptide from protein
Sequence: LLGCPVPLGV
Position: 652-661
Source molecule (GenBank): NP_703148.4
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P3pep10
Chemical type: Peptide from protein
Sequence: LLGCPVPLGV
Position: 652-661
Source molecule (GenBank): NP_703148.4
Assay category: MhcLigandElution
Result: Positive

Epitope: P3pep10
Chemical type: Peptide from protein
Sequence: LLGCPVPLGV
Position: 652-661
Source molecule (GenBank): NP_703148.4
Assay category: MhcBinding
Result: Positive

Chemical type: Peptide from protein
Sequence: AVAALPSGDRV
Position: 593-603
Source molecule (GenBank): Q9BRZ2.3
Assay category: MhcLigandElution
Result: Positive

Epitope: mutant E3 ubiquitin-protein ligase TRIM56 (593-603)
Chemical type: Peptide, no natural source
Sequence: ALAALPSGDRV
Assay category: MhcLigandElution
Result: Positive

Epitope: mutant Kinesin-like protein KIF18B (172-182)
Chemical type: Peptide, no natural source
Sequence: IHDLLELKGPL
Assay category: MhcLigandElution
Result: Positive