LiteFold/IEDB huggingface dataset:
Reference: H Li; K Natarajan; E L Malchiodi; D H Margulies; R A Mariuzza. "Three-dimensional structure of H-2Dd complexed with an immunodominant peptide from human immunodeficiency virus envelope glycoprotein 120." Journal of molecular biology (1998).

Epitope: P18-I10
Chemical type: Peptide from protein
Sequence: RGPGRAFVTI
Position: 311-320
Source molecule (GenBank): P04582.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 3.1
Reference: T J Kirksey; R R Pogue-Caley; J A Frelinger; E J Collins. "The structural basis for the increased immunogenicity of two HIV-reverse transcriptase peptide variant/class I major histocompatibility complexes." The Journal of biological chemistry (1999).

Epitope: I1Y
Chemical type: Peptide, no natural source
Sequence: YLKEPVHGV
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 56.0

Epitope: I1Y
Chemical type: Peptide, no natural source
Sequence: YLKEPVHGV
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.2

Epitope: wild type RT
Chemical type: Peptide from protein
Sequence: ILKEPVHGV
Position: 309-317
Source molecule (GenBank): YP_001856242.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 48.0
Reference: P Rezacova; J Lescar; J Brynda; M Fabry; M Horejsi; J Sedlacek; G A Bentley. "Structural basis of HIV-1 and HIV-2 protease inhibition by a monoclonal antibody." Structure (London, England : 1993) (2001).

Epitope: HIV-1 protease (HIV Pr) (1-9)
Chemical type: Peptide from protein
Sequence: PQITLWQRR
Position: 1-9
Source molecule (GenBank): AAS38336.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.7

Epitope: HIV-1 protease (HIV Pr) (1-9)
Chemical type: Peptide from protein
Sequence: PQITLWQRR
Position: 1-9
Source molecule (GenBank): AAS38336.1
Assay category: BCell
Result: Positive

Epitope: HIV-1 protease (HIV Pr) (1-9)
Chemical type: Peptide from protein
Sequence: PQITLWQRR
Position: 1-9
Source molecule (GenBank): AAS38336.1
Assay category: BCell
Result: Positive
Reference: Pavlina Rezacova; Jiri Brynda; Julien Lescar; Milan Fabry; Magda Horejsi; Irena Sieglova; Juraj Sedlacek; Graham A Bentley. "Crystal structure of a cross-reaction complex between an anti-HIV-1 protease antibody and an HIV-2 protease peptide." Journal of structural biology (2005).

Epitope: PH2 (HIV-2 protease 1-8)
Chemical type: Peptide from protein
Sequence: PQFSLWKR
Position: 1-8
Source molecule (GenBank): AAT99511.1
Assay category: BCell
Result: Positive
Quantitative measurement: 1.89
Reference: Guillaume B E Stewart-Jones; Geraldine Gillespie; Ian M Overton; Rupert Kaul; Philippe Roche; Andrew J McMichael; Sarah Rowland-Jones; E Yvonne Jones. "Structures of three HIV-1 HLA-B*5703-peptide complexes and identification of related HLAs potentially associated with long-term nonprogression." Journal of immunology (Baltimore, Md. : 1950) (2005).

Epitope: ISP (HIV gag p24 147-158)
Chemical type: Peptide from protein
Sequence: ISPRTLNAW
Position: 147-155
Source molecule (GenBank): AAV53168.1
Assay category: TCell
Result: Positive-High
Host: F 
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: ISP (HIV gag p24 147-158)
Chemical type: Peptide from protein
Sequence: ISPRTLNAW
Position: 147-155
Source molecule (GenBank): AAV53168.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 1.35

Epitope: KAF-11 (HIV gag p24 30-40)
Chemical type: Peptide from protein
Sequence: KAFSPEVIPMF
Position: 30-40
Source molecule (GenBank): ABO73990.1
Assay category: TCell
Result: Positive-High
Host: F 
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: KAF-11 (HIV gag p24 30-40)
Chemical type: Peptide from protein
Sequence: KAFSPEVIPMF
Position: 30-40
Source molecule (GenBank): ABO73990.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 1.65

Epitope: KAF-8 (HIV gag p24 30-37)
Chemical type: Peptide from protein
Sequence: KAFSPEVI
Position: 30-37
Source molecule (GenBank): ABO73990.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.0

Epitope: TST (HIV p24)
Chemical type: Peptide from protein
Sequence: TSTLQEQIGW
Position: 95-104
Source molecule (GenBank): CAD36203.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: IVL (HIV-1 pol)
Chemical type: Peptide from protein
Sequence: IVLPEKDSW
Position: 343-351
Source molecule (GenBank): AAS38336.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Daniel A Calarese; Hing-Ken Lee; Cheng-Yuan Huang; Michael D Best; Rena D Astronomo; Robyn L Stanfield; Hermann Katinger; Dennis R Burton; Chi-Huey Wong; Ian A Wilson. "Dissection of the carbohydrate specificity of the broadly neutralizing anti-HIV-1 antibody 2G12." Proceedings of the National Academy of Sciences of the United States of America (2005).

Epitope: Oligomannose 4 (Man4)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive

Epitope: Oligomannose 4 (Man4)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Quantitative measurement: 100.0

Epitope: Oligomannose 4 (Man4)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Quantitative measurement: 2.0

Epitope: Oligomannose 5 (Man5)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Quantitative measurement: 100.0

Epitope: Oligomannose 5 (Man5)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Quantitative measurement: 2.75

Epitope: Oligomannose 5 (Man5)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive

Epitope: Oligomannose 7 (Man7)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Quantitative measurement: 700.0

Epitope: Oligomannose 7 (Man7)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive

Epitope: Oligomannose 7 (Man7)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Quantitative measurement: 2.33

Epitope: Oligomannose 8 (Man8)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Quantitative measurement: 1300.0

Epitope: Oligomannose 8 (Man8)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive

Epitope: Oligomannose 8 (Man8)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Quantitative measurement: 2.85

Epitope: Oligomannose 6 (Man7)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive

Epitope: Oligomannose 9 (Man9)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive

Epitope: Oligomannose 9 (Man9)
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Quantitative measurement: 1000.0

Epitope: Man9GlcNAc2
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Reference: Fuliang Chu; Zhiyong Lou; Yu Wai Chen; Yiwei Liu; Bin Gao; Lili Zong; Abdul Hamid Khan; John I Bell; Zihe Rao; George F Gao. "First glimpse of the peptide presentation by rhesus macaque MHC class I: crystal structures of Mamu-A*01 complexed with two immunogenic SIV epitopes and insights into CTL escape." Journal of immunology (Baltimore, Md. : 1950) (2007).

Epitope: CM9 (Gag 181-189)
Chemical type: Peptide from protein
Sequence: CTPYDINQM
Position: 181-189
Source molecule (GenBank): P31634.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.8

Epitope: TL8 (Tat 28-35)
Chemical type: Peptide from protein
Sequence: TTPESANL
Position: 28-35
Source molecule (GenBank): BAA00868.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.8
Reference: Christine McBeth; Audrey Seamons; Juan C Pizarro; Sarel J Fleishman; David Baker; Tanja Kortemme; Joan M Goverman; Roland K Strong. "A new twist in TCR diversity revealed by a forbidden alphabeta TCR." Journal of molecular biology (2008).

Epitope: MBP121-140
Chemical type: Peptide from protein
Sequence: GFGYGGRASDYKSAHKGFKG
Position: 122-141
Source molecule (GenBank): AAA39496.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymphoid
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: MBP124-135
Chemical type: Peptide, no natural source
Sequence: RGYGGRASDYKSAH
Assay category: TCell
Result: Positive
Quantitative measurement: 11600.0

Epitope: MBP124-135
Chemical type: Peptide, no natural source
Sequence: RGYGGRASDYKSAH
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.15

Epitope: MBP131-150
Chemical type: Peptide from protein
Sequence: YKSAHKGFKGAYDAQGTLSK
Position: 132-151
Source molecule (GenBank): AAA39496.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymphoid
Culture conditions: Cell Line / Clone (Hybridoma)
Reference: Kuan-Wei Chen; Katharina Blatt; Wayne R Thomas; Ines Swoboda; Peter Valent; Rudolf Valenta; Susanne Vrtala. "Hypoallergenic Der p 1/Der p 2 combination vaccines for immunotherapy of house dust mite allergy." The Journal of allergy and clinical immunology (2012).

Epitope: Der p 1 P2
Chemical type: Peptide from protein
Sequence: NQSLDLAEQELVDCASQHGCHGDTIPRGIEYIQ
Position: 150-182
Source molecule (GenBank): P08176.2
Assay category: BCell
Result: Negative

Epitope: Der p 1 P2
Chemical type: Peptide from protein
Sequence: NQSLDLAEQELVDCASQHGCHGDTIPRGIEYIQ
Position: 150-182
Source molecule (GenBank): P08176.2
Assay category: BCell
Result: Positive

Epitope: Der p 1 P3
Chemical type: Peptide from protein
Sequence: HNGVVQESYYRYVAREQSCRRPNAQRFGISN
Position: 165-195
Source molecule (GenBank): CAQ68250.1
Assay category: BCell
Result: Positive

Epitope: Der p 1 P5
Chemical type: Peptide from protein
Sequence: KDLDAFRHYDGRTIIQRDNGYQPNYHAVNIV
Position: 225-255
Source molecule (GenBank): CAQ68250.1
Assay category: BCell
Result: Negative

Epitope: Der p 1 P5
Chemical type: Peptide from protein
Sequence: KDLDAFRHYDGRTIIQRDNGYQPNYHAVNIV
Position: 225-255
Source molecule (GenBank): CAQ68250.1
Assay category: BCell
Result: Positive

Epitope: Der p 1 P6
Chemical type: Peptide from protein
Sequence: GRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWI
Position: 235-267
Source molecule (GenBank): CAQ68250.1
Assay category: BCell
Result: Positive

Epitope: Der p 1 P8
Chemical type: Peptide from protein
Sequence: VRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL
Position: 268-302
Source molecule (GenBank): CAQ68250.1
Assay category: BCell
Result: Negative

Epitope: Der p 2 P1
Chemical type: Peptide from protein
Sequence: DQVDVKDCANHEIKKVLVPGCHGSEPCIIHRGK
Position: 1-33
Source molecule (GenBank): CAQ68249.1
Assay category: BCell
Result: Positive

Epitope: Der p 2 P3
Chemical type: Peptide from protein
Sequence: EANQNSKTAKIEIKASIEGLEVDVPGIDPNAC
Assay category: BCell
Result: Positive

Epitope: Der p 2 P4
Chemical type: Peptide from protein
Sequence: EVDVPGIDPNACHYMKCPLVKGQQYDIKYTWIVPKIAPKSEN
Assay category: BCell
Result: Negative

Epitope: Der p 2 P4
Chemical type: Peptide from protein
Sequence: EVDVPGIDPNACHYMKCPLVKGQQYDIKYTWIVPKIAPKSEN
Assay category: BCell
Result: Positive-Low

Epitope: Der p 2 P5
Chemical type: Peptide from protein
Sequence: APKSENVVVTVKVMGDNGVLACAIATHAKIRD
Position: 98-129
Source molecule (GenBank): CAQ68249.1
Assay category: BCell
Result: Negative
Reference: Tatsuya Takahashi; Shoichi Naito; Junji Onoda; Akira Yamauchi; Etsuo Nakamura; Junji Kishino; Taeko Kawai; Satoko Matsukawa; Tomoko Toyosaki-Maeda; Miki Tanimura; Naoshi Fukui; Yoshito Numata; Shoji Yamane. "Development of a novel immunoassay for the measurement of type II collagen neoepitope generated by collagenase cleavage." Clinica chimica acta; international journal of clinical chemistry (2012).

Epitope: Peptide 1
Chemical type: Peptide from protein
Sequence: GPPGPQG
Position: 120-126
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 1
Chemical type: Peptide from protein
Sequence: GPPGPQG
Position: 120-126
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 1
Chemical type: Peptide from protein
Sequence: GPPGPQG
Position: 120-126
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 1
Chemical type: Peptide from protein
Sequence: GPPGPQG
Position: 120-126
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 1
Chemical type: Peptide from protein
Sequence: GPPGPQG
Position: 120-126
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 1
Chemical type: Peptide from protein
Sequence: GPPGPQG
Position: 120-126
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 1
Chemical type: Peptide from protein
Sequence: GPPGPQG
Position: 120-126
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: type II collagen (967-975)
Chemical type: Peptide from protein
Sequence: AEGPPGPQG
Position: 967-975
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive

Epitope: type II collagen (967-975)
Chemical type: Peptide from protein
Sequence: AEGPPGPQG
Position: 967-975
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive-Low

Epitope: Peptide 3
Chemical type: Peptide from protein
Sequence: GEPGDDGPS
Position: 957-965
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 3
Chemical type: Peptide from protein
Sequence: GEPGDDGPS
Position: 957-965
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 3
Chemical type: Peptide from protein
Sequence: GEPGDDGPS
Position: 957-965
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 3
Chemical type: Peptide from protein
Sequence: GEPGDDGPS
Position: 957-965
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks

Epitope: Peptide 3
Chemical type: Peptide from protein
Sequence: GEPGDDGPS
Position: 957-965
Source molecule (GenBank): AAC41772.1
Assay category: BCell
Result: Positive
Host: F 4-6 weeks
Reference: Katalin Kis-Toth; Marianna Radacs; Katalin Olasz; Willem van Eden; Katalin Mikecz; Tibor T Glant. "Arthritogenic T cells drive the recovery of autoantibody-producing B cell homeostasis and the adoptive transfer of arthritis in SCID mice." International immunology (2012).

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PG aggrecan 70-84
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 16-20 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Aleksandra Wroblewska; Simon D van Haren; Eszter Herczenik; Paul Kaijen; Aleksandra Ruminska; Sheng-Yu Jin; X Long Zheng; Maartje van den Biggelaar; Anja ten Brinke; Alexander B Meijer; Jan Voorberg. "Modification of an exposed loop in the C1 domain reduces immune responses to factor VIII in hemophilia A mice." Blood (2012).

Epitope: Epitope residues of mAb KM33 on FVIII
Chemical type: Discontinuous protein residues
Discontinuous residues: R2109, K2111, F2112
Source molecule (GenBank): P00451.1
Assay category: BCell
Result: Positive

Epitope: Epitope residues of mAb KM33 on FVIII
Chemical type: Discontinuous protein residues
Discontinuous residues: R2109, K2111, F2112
Source molecule (GenBank): P00451.1
Assay category: BCell
Result: Positive

Epitope: FVIII C1 (2076-2105)
Chemical type: Peptide from protein
Sequence: LAPMIIHGIKTQGARQKFSSLYISQFIIMY
Position: 2095-2124
Source molecule (GenBank): P00451.1
Assay category: TCell
Result: Negative
Host: M 8-12 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: FVIII C1 (2081-2100)
Chemical type: Peptide from protein
Sequence: IHGIKTQGARQKFSSLYISQ
Position: 2100-2119
Source molecule (GenBank): P00451.1
Assay category: TCell
Result: Negative
Host: M 8-12 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: FVIII C2 (2191-2210)
Chemical type: Peptide from protein
Sequence: TASSYFTNMFATWSPSKARL
Position: 2210-2229
Source molecule (GenBank): P00451.1
Assay category: TCell
Result: Positive-Low
Host: M 8-12 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: FVIII C2 (2201-2220)
Chemical type: Peptide from protein
Sequence: ATWSPSKARLHLQGRSNAWR
Position: 2220-2239
Source molecule (GenBank): P00451.1
Assay category: TCell
Result: Positive
Host: M 8-12 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: FVIII C2 (2211-2230)
Chemical type: Peptide from protein
Sequence: HLQGRSNAWRPQVNNPKEWL
Position: 2230-2249
Source molecule (GenBank): P00451.1
Assay category: TCell
Result: Negative
Host: M 8-12 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: FVIII C2 (2201-2230)
Chemical type: Peptide from protein
Sequence: ATWSPSKARLHLQGRSNAWRPQVNNPKEWL
Position: 2220-2249
Source molecule (GenBank): P00451.1
Assay category: TCell
Result: Positive
Host: M 8-12 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Koji Kono; Hisae Iinuma; Yasunori Akutsu; Hiroaki Tanaka; Naoko Hayashi; Yasuto Uchikado; Tsuyoshi Noguchi; Hideki Fujii; Kota Okinaka; Ryoji Fukushima; Hisahiro Matsubara; Masaichi Ohira; Hideo Baba; Shoji Natsugoe; Seigou Kitano; Kazuyoshi Takeda; Koji Yoshida; Takuya Tsunoda; Yusuke Nakamura. "Multicenter, phase II clinical trial of cancer vaccination for advanced esophageal cancer with three peptides derived from novel cancer-testis antigens." Journal of translational medicine (2012).

Epitope: TTK-567
Chemical type: Peptide from protein
Sequence: SYRNEIAYL
Position: 567-575
Source molecule (GenBank): P33981.2
Assay category: TCell
Result: Positive
Host:  mean: 62 years
Cell type: T cell CD4-
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: TTK-567
Chemical type: Peptide from protein
Sequence: SYRNEIAYL
Position: 567-575
Source molecule (GenBank): P33981.2
Assay category: TCell
Result: Positive
Host:  mean: 62 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IMP3-508
Chemical type: Peptide from protein
Sequence: KTVNELQNL
Position: 508-516
Source molecule (GenBank): Q9NZI8.2
Assay category: TCell
Result: Positive
Host:  mean: 62 years
Cell type: T cell CD4-
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IMP3-508
Chemical type: Peptide from protein
Sequence: KTVNELQNL
Position: 508-516
Source molecule (GenBank): Q9NZI8.2
Assay category: TCell
Result: Positive
Host:  mean: 62 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Cristian Cortez; Nobuko Yoshida; Diana Bahia; Tiago J P Sobreira. "Structural basis of the interaction of a Trypanosoma cruzi surface molecule implicated in oral infection with host cells and gastric mucin." PloS one (2012).

Epitope: P3 (epitope for mAb 3F6)
Chemical type: Peptide from protein
Sequence: RANDKGSVISLARLTEELKT
Position: 244-263
Source molecule (GenBank): AAA21303.1
Assay category: BCell
Result: Positive

Epitope: P3 (epitope for mAb 3F6)
Chemical type: Peptide from protein
Sequence: RANDKGSVISLARLTEELKT
Position: 244-263
Source molecule (GenBank): AAA21303.1
Assay category: BCell
Result: Positive
Reference: Ulrike Gerdemann; Jacqueline M Keirnan; Usha L Katari; Ryu Yanagisawa; Anne S Christin; Leslie E Huye; Serena K Perna; Sravya Ennamuri; Stephen Gottschalk; Malcolm K Brenner; Helen E Heslop; Cliona M Rooney; Ann M Leen. "Rapidly generated multivirus-specific cytotoxic T lymphocytes for the prophylaxis and treatment of viral infections." Molecular therapy : the journal of the American Society of Gene Therapy (2012).

Epitope: NLV-pp65
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 485-493
Source molecule (GenBank): AAA45994.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: QYD-pp65
Chemical type: Peptide from protein
Sequence: QYDPVAALF
Position: 331-339
Source molecule (GenBank): AAA45994.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: TDL-Hexon
Chemical type: Peptide from protein
Sequence: TDLGQNLLY
Position: 886-894
Source molecule (GenBank): P04133.3
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone