LiteFold/IEDB huggingface dataset:
Reference: Alexey V Danilkovich; Valery I Turobov; Victor A Palikov; Yulia A Palikova; Anna O Shepelyakovskaya; Evgeniy S Mikhaylov; Gulsara A Slashcheva; Tatiana E Shadrina; Elvira R Shaykhutdinova; Ekaterina A Rasskazova; Elena A Tukhovskaya; Oksana N Khokhlova; Igor A Dyachenko; Alina M Ismailova; Dmitry V Zinchenko; Elena V Navolotskaya; Valery M Lipkin; Arkady N Murashev; Igor P Udovichenko. "C-Terminal Region of Caveolin-3 Contains a Stretch of Amino Acid Residues Capable of Diminishing Symptoms of Experimental Autoimmune Encephalomyelitis but Not Rheumatoid Arthritis Modeled in Rats." Biomedicines (2023).

Epitope: pCav3 136-146
Chemical type: Peptide from protein
Sequence: LGQVCSSIKVV
Position: 136-146
Source molecule (GenBank): P56539.1
Assay category: TCell
Result: Positive
Host: F 10-12 weeks

Epitope: pCav3 136-146
Chemical type: Peptide from protein
Sequence: LGQVCSSIKVV
Position: 136-146
Source molecule (GenBank): P56539.1
Assay category: TCell
Result: Positive
Host: F 10-12 weeks
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Immunocortin peptide
Chemical type: Peptide, no natural source
Sequence: VKKPGCSSVKV
Assay category: TCell
Result: Positive
Host: F 8-12 weeks

Epitope: Immunocortin peptide
Chemical type: Peptide, no natural source
Sequence: VKKPGCSSVKV
Assay category: TCell
Result: Positive
Host: F 10-12 weeks
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Immunocortin peptide
Chemical type: Peptide, no natural source
Sequence: VKKPGCSSVKV
Assay category: TCell
Result: Positive
Host: F 10-12 weeks
Reference: Yanni Gao; Xiaolin Jiang; Xing Yang; Keshan Zhang; Ping Jiang; Juan Bai. "Novel Epitope Mapping of African Swine Fever Virus pI215L Protein Using Monoclonal Antibodies." Viruses (2023).

Epitope: ASFV pI215L 67-80
Chemical type: Peptide from protein
Sequence: LTFTSEMWHPNIYS
Position: 67-80
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: ASFV pI215L 67-80
Chemical type: Peptide from protein
Sequence: LTFTSEMWHPNIYS
Position: 67-80
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: ASFV pI215L 67-80
Chemical type: Peptide from protein
Sequence: LTFTSEMWHPNIYS
Position: 67-80
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: ASFV pI215L 67-80
Chemical type: Peptide from protein
Sequence: LTFTSEMWHPNIYS
Position: 67-80
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: ASFV pI215L 67-80
Chemical type: Peptide from protein
Sequence: LTFTSEMWHPNIYS
Position: 67-80
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: ASFV pI215L 167-176
Chemical type: Peptide from protein
Sequence: IEYFKNAASN
Position: 167-176
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: ASFV pI215L 167-176
Chemical type: Peptide from protein
Sequence: IEYFKNAASN
Position: 167-176
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: ASFV pI215L 167-176
Chemical type: Peptide from protein
Sequence: IEYFKNAASN
Position: 167-176
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: ASFV pI215L 167-176
Chemical type: Peptide from protein
Sequence: IEYFKNAASN
Position: 167-176
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: ASFV pI215L 167-176
Chemical type: Peptide from protein
Sequence: IEYFKNAASN
Position: 167-176
Source molecule (GenBank): CBW46807.1
Assay category: BCell
Result: Positive
Host: F 6 weeks
Reference: Carissa Embury-Hyatt; Estella Moffat; Dmytro Zhmendak; Cassidy N G Erdelyan; Brad Collignon; Kalhari Goonewardene; Aruna Ambagala; Ming Yang. "Generation and characterization of a monoclonal antibody against an African swine fever virus protein encoded by the  gene." Frontiers in veterinary science (2023).

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Peptide 12
Chemical type: Peptide from protein
Sequence: VDFQANIENMDDLQK
Position: 111-125
Source molecule (GenBank): AYW34014.1
Assay category: BCell
Result: Positive
Host: F
Reference: Alexander Simonis; Christoph Kreer; Alexandra Albus; Katharina Rox; Biao Yuan; Dmitriy Holzmann; Joana A Wilms; Sylvia Zuber; Lisa Kottege; Sandra Winter; Meike Meyer; Kristin Schmitt; Henning Gruell; Sebastian J Theobald; Anna-Maria Hellmann; Christina Meyer; Meryem Seda Ercanoglu; Nina Cramer; Antje Munder; Michael Hallek; Gerd Fätkenheuer; Manuel Koch; Harald Seifert; Ernst Rietschel; Thomas C Marlovits; Silke van Koningsbruggen-Rietschel; Florian Klein; Jan Rybniker. "Discovery of highly neutralizing human antibodies targeting Pseudomonas aeruginosa." Cell (2023).

Epitope: Epitope of Fab 30-B8 on PcrV
Chemical type: Discontinuous protein residues
Discontinuous residues: D165, A166, D199, T200, F201, S202, K208, S212, G223, D226
Source molecule (GenBank): WP_003109502.1
Assay category: BCell
Result: Positive
Host: F 20 years

Epitope: Epitope of Fab 30-B8 on PcrV
Chemical type: Discontinuous protein residues
Discontinuous residues: D165, A166, D199, T200, F201, S202, K208, S212, G223, D226
Source molecule (GenBank): WP_003109502.1
Assay category: BCell
Result: Positive

Epitope: Epitope of Fab 30-B8 on PcrV
Chemical type: Discontinuous protein residues
Discontinuous residues: D165, A166, D199, T200, F201, S202, K208, S212, G223, D226
Source molecule (GenBank): WP_003109502.1
Assay category: BCell
Result: Positive
Host: F 20 years

Epitope: Epitope of Fab 30-B8 on PcrV
Chemical type: Discontinuous protein residues
Discontinuous residues: D165, A166, D199, T200, F201, S202, K208, S212, G223, D226
Source molecule (GenBank): WP_003109502.1
Assay category: BCell
Result: Positive

Epitope: Epitope of Fab 30-B8 on PcrV
Chemical type: Discontinuous protein residues
Discontinuous residues: D165, A166, D199, T200, F201, S202, K208, S212, G223, D226
Source molecule (GenBank): WP_003109502.1
Assay category: BCell
Result: Positive
Host: F 20 years

Epitope: Epitope of Fab 30-B8 on PcrV
Chemical type: Discontinuous protein residues
Discontinuous residues: D165, A166, D199, T200, F201, S202, K208, S212, G223, D226
Source molecule (GenBank): WP_003109502.1
Assay category: BCell
Result: Positive
Host: F 20 years

Epitope: Epitope of Fab 11-E5 on PcrV
Chemical type: Discontinuous protein residues
Discontinuous residues: K225, K232, D233, N234, N235, N239, T242, D246
Source molecule (GenBank): WP_003109502.1
Assay category: BCell
Result: Positive
Host: M 24 years

Epitope: Epitope of Fab 11-E5 on PcrV
Chemical type: Discontinuous protein residues
Discontinuous residues: K225, K232, D233, N234, N235, N239, T242, D246
Source molecule (GenBank): WP_003109502.1
Assay category: BCell
Result: Positive
Host: M 24 years

Epitope: Epitope of Fab 11-E5 on PcrV
Chemical type: Discontinuous protein residues
Discontinuous residues: K225, K232, D233, N234, N235, N239, T242, D246
Source molecule (GenBank): WP_003109502.1
Assay category: BCell
Result: Positive
Reference: Mario Aldair Campos-Ruíz; Berenice Illades-Aguiar; Oscar Del Moral-Hernández; Mariana Romo-Castillo; Marcela Salazar-García; Mónica Espinoza-Rojo; Amalia Vences-Velázquez; Karen Cortés-Sarabia; Victor M Luna-Pineda. "Immunized mice naturally process in silico-derived peptides from the nucleocapsid of SARS-CoV-2." BMC microbiology (2023).

Epitope: Npep1
Chemical type: Peptide from protein
Sequence: MSDNGPQNQRNA
Position: 1-12
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Host: M

Epitope: Npep2
Chemical type: Peptide from protein
Sequence: RSKQRRPQGLPN
Position: 36-47
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Host: M

Epitope: Npep3
Chemical type: Peptide from protein
Sequence: DAYKTFPPTEPK
Position: 358-369
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Host: M
Reference: Qianyu Ji; Junfei Ma; Shuying Wang; Qing Liu. "Embedding of exogenous B cell epitopes on the surface of UreB structure generates a broadly reactive antibody response against Helicobacter pylori." Immunology (2024).

Epitope: HpaA 131-142
Chemical type: Peptide from protein
Sequence: PDPKRTIQKKSE
Position: 131-142
Source molecule (GenBank): Q48264.1
Assay category: BCell
Result: Positive

Epitope: AlpB 106-132
Chemical type: Peptide from protein
Sequence: SITQCGATNSGSSGGATAAATTSSTGS
Position: 121-147
Source molecule (GenBank): WP_077232030.1
Assay category: BCell
Result: Positive

Epitope: FlaA 267-279
Chemical type: Peptide from protein
Sequence: KNDSDGRLVAAIN
Position: 267-279
Source molecule (GenBank): AAU21201.1
Assay category: BCell
Result: Positive
Reference: Joachim G J V Aerts; Pauline L de Goeje; Robin Cornelissen; Margaretha E H Kaijen-Lambers; Koen Bezemer; Cor H van der Leest; Niken M Mahaweni; André Kunert; Ferry A L M Eskens; Cynthia Waasdorp; Eric Braakman; Bronno van der Holt; Arnold G Vulto; Rudi W Hendriks; Joost P J J Hegmans; Henk C Hoogsteden. "Autologous Dendritic Cells Pulsed with Allogeneic Tumor Cell Lysate in Mesothelioma: From Mouse to Human." Clinical cancer research : an official journal of the American Association for Cancer Research (2018).

Epitope: mesothelin 20–28
Chemical type: Peptide from protein
Sequence: SLLFLLFSL
Position: 20-28
Source molecule (GenBank): Q13421.2
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: skin
Culture conditions: Direct Ex Vivo

Epitope: mesothelin 531– 539
Chemical type: Peptide from protein
Sequence: VLPLTVAEV
Position: 531-539
Source molecule (GenBank): AAV87530.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: skin
Culture conditions: Direct Ex Vivo
Reference: Ruoyi Ishikawa; Yu Yamazaki; Masahiro Nakamori; Tetsuya Takahashi; Hirofumi Maruyama. "Antibody-recognizing residues 188-211 of TMEM106B exhibit immunohistochemical reactivity with the TMEM106B C-terminal fragment." Frontiers in neuroscience (2023).

Epitope: No.1: 140-163
Chemical type: Peptide from protein
Sequence: RTIYLNITNTLNITNNNYYSVEVE
Position: 140-163
Source molecule (GenBank): AAH39741.1
Assay category: BCell
Result: Negative

Epitope: No.2: 164-187
Chemical type: Peptide from protein
Sequence: NITAQVQFSKTVIGKARLNNISII
Position: 164-187
Source molecule (GenBank): AAH39741.1
Assay category: BCell
Result: Negative

Epitope: No.2: 164-187
Chemical type: Peptide from protein
Sequence: NITAQVQFSKTVIGKARLNNISII
Position: 164-187
Source molecule (GenBank): AAH39741.1
Assay category: BCell
Result: Positive

Epitope: No.4: 253-274
Chemical type: Peptide from protein
Sequence: CGRNTTYQLGQSEYLNVLQPQQ
Position: 253-274
Source molecule (GenBank): AAH39741.1
Assay category: BCell
Result: Positive

Epitope: No.4: 253-274
Chemical type: Peptide from protein
Sequence: CGRNTTYQLGQSEYLNVLQPQQ
Position: 253-274
Source molecule (GenBank): AAH39741.1
Assay category: BCell
Result: Negative
Reference: Parisa Bakhshi; Maryam Nourizadeh; Laleh Sharifi; Mohammad M Farajollahi; Monireh Mohsenzadegan. "Development of dendritic cell loaded MAGE-A2 long peptide; a potential target for tumor-specific T cell-mediated prostate cancer immunotherapy." Cancer cell international (2023).

Epitope: MAGE-A2-LP
Chemical type: Peptide from protein
Sequence: KTGLLIIVLAIIAIEGDCAPEEKIWEELSM
Position: 198-227
Source molecule (GenBank): P43356.1
Assay category: TCell
Result: Positive
Host: M 
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: MAGE-A2-LP
Chemical type: Peptide from protein
Sequence: KTGLLIIVLAIIAIEGDCAPEEKIWEELSM
Position: 198-227
Source molecule (GenBank): P43356.1
Assay category: TCell
Result: Positive
Host: M 
Cell type: T cell
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: MAGE-A2-LP
Chemical type: Peptide from protein
Sequence: KTGLLIIVLAIIAIEGDCAPEEKIWEELSM
Position: 198-227
Source molecule (GenBank): P43356.1
Assay category: TCell
Result: Positive
Host: M 
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: MAGE-A2-LP
Chemical type: Peptide from protein
Sequence: KTGLLIIVLAIIAIEGDCAPEEKIWEELSM
Position: 198-227
Source molecule (GenBank): P43356.1
Assay category: TCell
Result: Positive
Host: M 
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Jing Ning; Jianqiao Ding; Shu Wang; Youhong Jiang; Daqing Wang; Shenyi Jiang. "GPC3 Promotes Lung Squamous Cell Carcinoma Progression and HLA-A2-Restricted GPC3 Antigenic Peptide-Modified Dendritic Cell-Induced Cytotoxic T Lymphocytes to Kill Lung Squamous Cell Carcinoma Cells." Journal of immunology research (2023).

Epitope: GPC3 (522-530) (p2)
Chemical type: Peptide from protein
Sequence: FLAELAYDL
Position: 522-530
Source molecule (GenBank): P51654.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: GPC3 (522-530) (p2)
Chemical type: Peptide from protein
Sequence: FLAELAYDL
Position: 522-530
Source molecule (GenBank): P51654.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: GPC3 (169-178) (p1)
Chemical type: Peptide from protein
Sequence: ELFDSLFPV
Position: 169-177
Source molecule (GenBank): P51654.1
Assay category: TCell
Result: Negative
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: GPC3 (169-178) (p1)
Chemical type: Peptide from protein
Sequence: ELFDSLFPV
Position: 169-177
Source molecule (GenBank): P51654.1
Assay category: TCell
Result: Negative
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Chaohua Huang; Chenfu Cao; Zhichao Xu; Yanxing Lin; Jiang Wu; Qiaoyu Weng; Zheng Liu; Ye Jin; Peng Chen; Qunyi Hua. "A blocking ELISA based on virus-like nanoparticles chimerized with an antigenic epitope of ASFV P54 for detecting ASFV antibodies." Scientific reports (2023).

Epitope: ASFV p54 67-75
Chemical type: Peptide from protein
Sequence: DIQFINPYQ
Position: 67-75
Source molecule (GenBank): ADD62408.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks

Epitope: ASFV p54 67-75
Chemical type: Peptide from protein
Sequence: DIQFINPYQ
Position: 67-75
Source molecule (GenBank): ADD62408.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks

Epitope: ASFV p54 67-75
Chemical type: Peptide from protein
Sequence: DIQFINPYQ
Position: 67-75
Source molecule (GenBank): ADD62408.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks
Reference: Simon Schröder; Anja Richter; Talitha Veith; Jackson Emanuel; Luca Gudermann; Kirstin Friedmann; Lara M Jeworowski; Barbara Mühlemann; Terry C Jones; Marcel A Müller; Victor M Corman; Christian Drosten. "Characterization of intrinsic and effective fitness changes caused by temporarily fixed mutations in the SARS-CoV-2 spike E484 epitope and identification of an epistatic precondition for the evolution of E484A in variant Omicron." Virology journal (2023).

Epitope: SARS CoV2 Spike E484
Chemical type: Discontinuous protein residues
Discontinuous residues: E484
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive

Epitope: SARS CoV2 Spike E484
Chemical type: Discontinuous protein residues
Discontinuous residues: E484
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Reference: Xiaoying Yu; Kathryn M Hastie; Carl W Davis; Ruben Diaz Avalos; Dewight Williams; Diptiben Parekh; Sean Hui; Colin Mann; Chitra Hariharan; Ayato Takada; Rafi Ahmed; Erica Ollmann Saphire. "The evolution and determinants of neutralization of potent head-binding antibodies against Ebola virus." Cell reports (2023).

Epitope: Epitope of IA2 on EBOV GP
Chemical type: Discontinuous protein residues
Discontinuous residues: K114, K115, P116, D117, G118, S119, E120, T144, G145, P146, Q221, T223, G224, T227, E229
Source molecule (GenBank): Q05320.1
Assay category: BCell
Result: Positive

Epitope: Epitope of IA2 on EBOV GP
Chemical type: Discontinuous protein residues
Discontinuous residues: K114, K115, P116, D117, G118, S119, E120, T144, G145, P146, Q221, T223, G224, T227, E229
Source molecule (GenBank): Q05320.1
Assay category: BCell
Result: Positive
Quantitative measurement: 767000.0

Epitope: Epitope of IA2 on EBOV GP
Chemical type: Discontinuous protein residues
Discontinuous residues: K114, K115, P116, D117, G118, S119, E120, T144, G145, P146, Q221, T223, G224, T227, E229
Source molecule (GenBank): Q05320.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.000000538

Epitope: Epitope of IA2 on EBOV GP
Chemical type: Discontinuous protein residues
Discontinuous residues: K114, K115, P116, D117, G118, S119, E120, T144, G145, P146, Q221, T223, G224, T227, E229
Source molecule (GenBank): Q05320.1
Assay category: BCell
Result: Positive

Epitope: Epitope of IA2 on EBOV GP
Chemical type: Discontinuous protein residues
Discontinuous residues: K114, K115, P116, D117, G118, S119, E120, T144, G145, P146, Q221, T223, G224, T227, E229
Source molecule (GenBank): Q05320.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.0010

Epitope: Epitope of 6D6 scFv on EBOV GP
Chemical type: Region on multi-chain protein
Discontinuous residues: J: A503, I504, V505, N563, E564, T566, Q567; N: D522, G524, A526, I527, G528, L529, A530, W531, I532, F535, G536, P537
Source molecule (GenBank): Q05320.1
Assay category: BCell
Result: Positive
Host: F 15 weeks

Epitope: Epitope of 6D6 scFv on EBOV GP
Chemical type: Region on multi-chain protein
Discontinuous residues: J: A503, I504, V505, N563, E564, T566, Q567; N: D522, G524, A526, I527, G528, L529, A530, W531, I532, F535, G536, P537
Source molecule (GenBank): Q05320.1
Assay category: BCell
Result: Positive
Host: F 15 weeks
Reference: Daphne M Hullegie-Peelen; Hector Tejeda Mora; Dennis A Hesselink; Eric Mj Bindels; Thierry Pp van den Bosch; Marian C Clahsen-van Groningen; Marjolein Dieterich; Sebastiaan Heidt; Robert C Minnee; Georges Mgm Verjans; Martin J Hoogduijn; Carla C Baan. "Virus-specific TRM cells of both donor and recipient origin reside in human kidney transplants." JCI insight (2023).

Epitope: EBV
Chemical type: Peptide from protein
Sequence: GLCTLVAML
Position: 259-267
Source molecule (GenBank): Q04360.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: kidney
Culture conditions: Direct Ex Vivo

Epitope: BKV
Chemical type: Peptide from protein
Sequence: LLMWEAVTV
Position: 108-116
Source molecule (GenBank): BAF93325.1
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD8+
Tissue: kidney
Culture conditions: Direct Ex Vivo

Epitope: CMV
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 482-490
Source molecule (GenBank): AAA45996.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: kidney
Culture conditions: Direct Ex Vivo

Epitope: Influenza A
Chemical type: Peptide from protein
Sequence: GILGFVFTL
Position: 58-66
Source molecule (GenBank): P03485.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: kidney
Culture conditions: Direct Ex Vivo
Reference: Marek Adam Harhala; Katarzyna Gembara; Izabela Rybicka; Zuzanna Maria Kaźmierczak; Paulina Miernikiewicz; Joanna Marta Majewska; Wiktoria Budziar; Anna Nasulewicz-Goldeman; Daniel C Nelson; Barbara Owczarek; Krystyna Dąbrowska. "Immunogenic epitope scanning in bacteriolytic enzymes Pal and Cpl-1 and engineering Pal to escape antibody responses." Frontiers in immunology (2023).

Epitope: Pal (251-296)
Chemical type: Peptide from protein
Sequence: DATNGDMKSNAFIRYNDGWYLLLPDGRLADKPQFTVEPDGLITAKV
Position: 251-296
Source molecule (GenBank): YP_004306947.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Pal (251-296)
Chemical type: Peptide from protein
Sequence: DATNGDMKSNAFIRYNDGWYLLLPDGRLADKPQFTVEPDGLITAKV
Position: 251-296
Source molecule (GenBank): YP_004306947.1
Assay category: BCell
Result: Positive

Epitope: Cpl-1 (301-339)
Chemical type: Peptide from protein
Sequence: MVSNEFIKSGKGWYFMNTNGELADNPSFTKEPDGLITVA
Position: 301-339
Source molecule (GenBank): CAA87744.1
Assay category: BCell
Result: Positive

Epitope: Cpl-1 (301-339)
Chemical type: Peptide from protein
Sequence: MVSNEFIKSGKGWYFMNTNGELADNPSFTKEPDGLITVA
Position: 301-339
Source molecule (GenBank): CAA87744.1
Assay category: BCell
Result: Positive
Host: F

Epitope: Pal (261-296)
Chemical type: Peptide from protein
Sequence: AFIRYNDGWYLLLPDGRLADKPQFTVEPDGLITAKV
Position: 261-296
Source molecule (GenBank): YP_004306947.1
Assay category: BCell
Result: Negative

Epitope: Pal (261-296)
Chemical type: Peptide from protein
Sequence: AFIRYNDGWYLLLPDGRLADKPQFTVEPDGLITAKV
Position: 261-296
Source molecule (GenBank): YP_004306947.1
Assay category: BCell
Result: Negative
Host: F

Epitope: Cpl-1 (291-331)
Chemical type: Peptide from protein
Sequence: WYYMTNERGNMVSNEFIKSGKGWYFMNTNGELADNPSFTKE
Position: 291-331
Source molecule (GenBank): CAA87744.1
Assay category: BCell
Result: Positive

Epitope: Cpl-1 (291-331)
Chemical type: Peptide from protein
Sequence: WYYMTNERGNMVSNEFIKSGKGWYFMNTNGELADNPSFTKE
Position: 291-331
Source molecule (GenBank): CAA87744.1
Assay category: BCell
Result: Positive-Low
Host: F