Reference: Daniel Yerly; David Heckerman; Todd Allen; Todd J Suscovich; Nebojsa Jojic; Carl Kadie; Werner J Pichler; Andreas Cerny; Christian Brander. "Design, expression, and processing of epitomized hepatitis C virus-encoded CTL epitopes." Journal of immunology (Baltimore, Md. : 1950) (2008).

Epitope: N3
Chemical type: Peptide from protein
Sequence: TLGFGAYMSK
Position: 1261-1270
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N9
Chemical type: Peptide from protein
Sequence: YMSKAHGIDP
Position: 1267-1276
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N9b
Chemical type: Peptide from protein
Sequence: YMSKAYGTDP
Position: 1267-1276
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N11
Chemical type: Peptide from protein
Sequence: SKAHGIDPNI
Position: 1269-1278
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N12b
Chemical type: Peptide from protein
Sequence: KAHGTDPNIR
Position: 1270-1279
Source molecule (GenBank): AAF65964.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N14c
Chemical type: Peptide from protein
Sequence: YGTDPNIRTG
Position: 1272-1281
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N15
Chemical type: Peptide from protein
Sequence: GIDPNIRTGV
Position: 1273-1282
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N15a
Chemical type: Peptide from protein
Sequence: GTDPNIRTGV
Position: 1273-1282
Source molecule (GenBank): CAA03854.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N15b
Chemical type: Peptide from protein
Sequence: GVDPNIRTGV
Position: 1273-1282
Source molecule (GenBank): AAF65945.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N35
Chemical type: Peptide from protein
Sequence: YSTYGKFLAD
Position: 1293-1302
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N37
Chemical type: Peptide from protein
Sequence: TYGKFLADGG
Position: 1295-1304
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N51a
Chemical type: Peptide from protein
Sequence: AYDIIMCDEC
Position: 1309-1318
Source molecule (GenBank): AAD56189.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N52
Chemical type: Peptide from protein
Sequence: YDIIICDECH
Position: 1310-1319
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N53a
Chemical type: Peptide from protein
Sequence: DIIMCDECHS
Position: 1311-1320
Source molecule (GenBank): AAD56189.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N54
Chemical type: Peptide from protein
Sequence: IIICDECHST
Position: 1312-1321
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N56
Chemical type: Peptide from protein
Sequence: ICDECHSTDA
Position: 1314-1323
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N58a
Chemical type: Peptide from protein
Sequence: DECHSTDSTT
Position: 1316-1325
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N60
Chemical type: Peptide from protein
Sequence: CHSTDATSIL
Position: 1318-1327
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N60a
Chemical type: Peptide from protein
Sequence: CHSTDSTSIL
Position: 1318-1327
Source molecule (GenBank): CAB41951.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N61a
Chemical type: Peptide from protein
Sequence: HSTDSTSILG
Position: 1319-1328
Source molecule (GenBank): CAB41951.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N62
Chemical type: Peptide from protein
Sequence: STDATSILGI
Position: 1320-1329
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N62b
Chemical type: Peptide from protein
Sequence: STDSTTILGI
Position: 1320-1329
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N63b
Chemical type: Peptide from protein
Sequence: TDSTTILGIG
Position: 1321-1330
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N64b
Chemical type: Peptide from protein
Sequence: DSTTILGIGT
Position: 1322-1331
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N66
Chemical type: Peptide from protein
Sequence: TSILGIGTVL
Position: 1324-1333
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N66a
Chemical type: Peptide from protein
Sequence: TTILGIGTVL
Position: 1324-1333
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N67
Chemical type: Peptide from protein
Sequence: SILGIGTVLD
Position: 1325-1334
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N77
Chemical type: Peptide from protein
Sequence: QAETAGARLV
Position: 1335-1344
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N78
Chemical type: Peptide from protein
Sequence: AETAGARLVV
Position: 1336-1345
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N84
Chemical type: Peptide from protein
Sequence: RLVVLATATP
Position: 1342-1351
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N91
Chemical type: Peptide from protein
Sequence: ATPPGSVTVP
Position: 1349-1358
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N99
Chemical type: Peptide from protein
Sequence: VPHPNIEEVA
Position: 1357-1366
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N99a
Chemical type: Peptide from protein
Sequence: PPHPNIEEVA
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N100
Chemical type: Peptide from protein
Sequence: PHPNIEEVAL
Position: 1358-1367
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N101
Chemical type: Peptide from protein
Sequence: HPNIEEVALS
Position: 1359-1368
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N101
Chemical type: Peptide from protein
Sequence: HPNIEEVALS
Position: 1359-1368
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: N109
Chemical type: Peptide from protein
Sequence: LSTTGEIPFY
Position: 1367-1376
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N109a
Chemical type: Peptide from protein
Sequence: LSNTGEIPFY
Position: 1367-1376
Source molecule (GenBank): CAB41951.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N110
Chemical type: Peptide from protein
Sequence: STTGEIPFYG
Position: 1368-1377
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N110a
Chemical type: Peptide from protein
Sequence: SNTGEIPFYG
Position: 1368-1377
Source molecule (GenBank): CAB41951.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N113
Chemical type: Peptide from protein
Sequence: GEIPFYGKAI
Position: 1371-1380
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N114
Chemical type: Peptide from protein
Sequence: EIPFYGKAIP
Position: 1372-1381
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N115
Chemical type: Peptide from protein
Sequence: IPFYGKAIPL
Position: 1373-1382
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N115
Chemical type: Peptide from protein
Sequence: IPFYGKAIPL
Position: 1373-1382
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: N118
Chemical type: Peptide from protein
Sequence: YGKAIPLEVI
Position: 1376-1385
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N118a
Chemical type: Peptide from protein
Sequence: YGKAIPLEAI
Position: 1376-1385
Source molecule (GenBank): ABR25251.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N130
Chemical type: Peptide from protein
Sequence: GRHLIFCHSK
Position: 1388-1397
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N143b
Chemical type: Peptide from protein
Sequence: DELAAKLSLG
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N144
Chemical type: Peptide from protein
Sequence: ELAAKLVALG
Position: 1402-1411
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N144a
Chemical type: Peptide from protein
Sequence: ELAAKLSALG
Position: 1402-1411
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N145d
Chemical type: Peptide from protein
Sequence: LAAKLSALGL
Position: 1403-1412
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N146
Chemical type: Peptide from protein
Sequence: AAKLVALGIN
Position: 1404-1413
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N146a
Chemical type: Peptide from protein
Sequence: AAKLSALGLN
Position: 1404-1413
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N146b
Chemical type: Peptide from protein
Sequence: AAKLSALGVN
Position: 1404-1413
Source molecule (GenBank): AAD56189.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N148
Chemical type: Peptide from protein
Sequence: KLVALGINAV
Position: 1406-1415
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N148c
Chemical type: Peptide from protein
Sequence: KLSALGLNAV
Position: 1406-1415
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N148d
Chemical type: Peptide from protein
Sequence: KLSALGVNAV
Position: 1406-1415
Source molecule (GenBank): BAA09073.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N149a
Chemical type: Peptide from protein
Sequence: LSALGLNAVA
Position: 1407-1416
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N149d
Chemical type: Peptide from protein
Sequence: LSALGVNAVA
Position: 1407-1416
Source molecule (GenBank): BAA09073.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N150
Chemical type: Peptide from protein
Sequence: VALGINAVAY
Position: 1408-1417
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N150a
Chemical type: Peptide from protein
Sequence: VALGVNAVAY
Position: 1408-1417
Source molecule (GenBank): BAA01582.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N150b
Chemical type: Peptide from protein
Sequence: SGLGLNAVAY
Position: 1408-1417
Source molecule (GenBank): CAA03854.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N150d
Chemical type: Peptide from protein
Sequence: SALGLNAVAY
Position: 1408-1417
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N151
Chemical type: Peptide from protein
Sequence: ALGINAVAYY
Position: 1409-1418
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N151a
Chemical type: Peptide from protein
Sequence: ALGLNAVAYY
Position: 1409-1418
Source molecule (GenBank): AAF65953.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N151b
Chemical type: Peptide from protein
Sequence: ALGVNAVAYY
Position: 1409-1418
Source molecule (GenBank): BAA01582.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N151c
Chemical type: Peptide from protein
Sequence: GLGINAVAYY
Position: 1409-1418
Source molecule (GenBank): AAA86907.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N151d
Chemical type: Peptide from protein
Sequence: GLGLNAVAYY
Position: 1409-1418
Source molecule (GenBank): AAF65950.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N153b
Chemical type: Peptide from protein
Sequence: GVNAVAYYRG
Position: 1411-1420
Source molecule (GenBank): BAA01582.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N158
Chemical type: Peptide from protein
Sequence: AYYRGLDVSV
Position: 1416-1425
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N159
Chemical type: Peptide from protein
Sequence: YYRGLDVSVI
Position: 1417-1426
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N164
Chemical type: Peptide from protein
Sequence: DVSVIPTSGD
Position: 1422-1431
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N167
Chemical type: Peptide from protein
Sequence: VIPTSGDVVV
Position: 1425-1434
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N177
Chemical type: Peptide from protein
Sequence: VATDALMTGY
Position: 1435-1444
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N177a
Chemical type: Peptide from protein
Sequence: VATDALMTGF
Position: 1435-1444
Source molecule (GenBank): AAF65950.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N178
Chemical type: Peptide from protein
Sequence: ATDALMTGYT
Position: 1436-1445
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N178
Chemical type: Peptide from protein
Sequence: ATDALMTGYT
Position: 1436-1445
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: N178a
Chemical type: Peptide from protein
Sequence: ATDALMTGFT
Position: 1436-1445
Source molecule (GenBank): AAF65950.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N179
Chemical type: Peptide from protein
Sequence: TDALMTGYTG
Position: 1437-1446
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N179a
Chemical type: Peptide from protein
Sequence: TDALMTGFTG
Position: 1437-1446
Source molecule (GenBank): AAF65950.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: N186a
Chemical type: Peptide from protein
Sequence: FTGDFDSVID
Position: 1444-1453
Source molecule (GenBank): AAF65950.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated