LiteFold/IEDB huggingface dataset:
Reference: P Wernhoff; C Unger; E Bajtner; H Burkhardt; R Holmdahl. "Identification of conformation-dependent epitopes and V gene selection in the B cell response to type II collagen in the DA rat." International immunology (2001).

Epitope: C1<sup>III</sup>
Chemical type: Peptide from protein
Sequence: ARGLTGRPGDA
Position: 559-569
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: C1<sup>III</sup>
Chemical type: Peptide from protein
Sequence: ARGLTGRPGDA
Position: 559-569
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: C1<sup>III</sup>
Chemical type: Peptide from protein
Sequence: ARGLTGRPGDA
Position: 559-569
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: C1<sup>III</sup>
Chemical type: Peptide from protein
Sequence: ARGLTGRPGDA
Position: 559-569
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: T2
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKG
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: T2
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKG
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: T2
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKG
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: E41
Chemical type: Peptide from protein
Sequence: GPRGLPGERGRTGPAGAAG
Position: 324-342
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: E41
Chemical type: Peptide from protein
Sequence: GPRGLPGERGRTGPAGAAG
Position: 324-342
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: E17
Chemical type: Peptide from protein
Sequence: GNPGTDGIPGAKG
Position: 408-420
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: E17
Chemical type: Peptide from protein
Sequence: GNPGTDGIPGAKG
Position: 408-420
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: E17
Chemical type: Peptide from protein
Sequence: GNPGTDGIPGAKG
Position: 408-420
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: U1
Chemical type: Peptide from protein
Sequence: LVGPRGERGFP
Position: 694-704
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: U1
Chemical type: Peptide from protein
Sequence: LVGPRGERGFP
Position: 694-704
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks

Epitope: U1
Chemical type: Peptide from protein
Sequence: LVGPRGERGFP
Position: 694-704
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  8-12 weeks
Reference: H G Kraetsch; C Unger; P Wernhoff; C Schneider; J R Kalden; R Holmdahl; H Burkhardt. "Cartilage-specific autoimmunity in rheumatoid arthritis: characterization of a triple helical B cell epitope in the integrin-binding-domain of collagen type II." European journal of immunology (2001).

Epitope: U1
Chemical type: Peptide from protein
Sequence: LVGPRGERGFP
Position: 625-635
Source molecule (GenBank): NP_149162.2
Assay category: BCell
Result: Positive
Host: F 43 years

Epitope: U1
Chemical type: Peptide from protein
Sequence: LVGPRGERGFP
Position: 625-635
Source molecule (GenBank): NP_149162.2
Assay category: BCell
Result: Positive
Host:  56.3 years

Epitope: U1
Chemical type: Peptide from protein
Sequence: LVGPRGERGFP
Position: 625-635
Source molecule (GenBank): NP_149162.2
Assay category: BCell
Result: Negative

Epitope: U1
Chemical type: Peptide from protein
Sequence: LVGPRGERGFP
Position: 625-635
Source molecule (GenBank): NP_149162.2
Assay category: BCell
Result: Positive
Reference: Masao Tanaka; Shoichi Ozaki; Daisuke Kawabata; Masaaki Kishimura; Fumio Osakada; Mitsuo Okubo; Masao Murakami; Kazuwa Nakao; Tsuneyo Mimori. "Potential preventive effects of follistatin-related protein/TSC-36 on joint destruction and antagonistic modulation of its autoantibodies in rheumatoid arthritis." International immunology (2003).

Epitope: FRP (169-176)
Chemical type: Peptide from protein
Sequence: LKFVEQNE
Position: 169-176
Assay category: BCell
Result: Positive

Epitope: FRP (169-176)
Chemical type: Peptide from protein
Sequence: LKFVEQNE
Position: 169-176
Assay category: BCell
Result: Positive
Reference: Chinh N Tran; Michael J Davis; Laura A Tesmer; Judith L Endres; Christopher D Motyl; Craig Smuda; Emily C Somers; Kevin C Chung; Andrew G Urquhart; Steven K Lundy; Susan Kovats; David A Fox. "Presentation of arthritogenic peptide to antigen-specific T cells by fibroblast-like synoviocytes." Arthritis and rheumatism (2007).

Epitope: GP-39 263-275
Chemical type: Peptide from protein
Sequence: RSFTLASSETGVG
Position: 263-275
Source molecule (GenBank): P36222.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: GP-39 263-275
Chemical type: Peptide from protein
Sequence: RSFTLASSETGVG
Position: 263-275
Source molecule (GenBank): P36222.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: CII 259-273
Chemical type: Peptide from protein
Sequence: GIAGFKGEQGPKGEP
Position: 459-473
Source molecule (GenBank): P02458.3
Assay category: TCell
Result: Positive
Cell type: T cell hybridoma
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: CII 259-273
Chemical type: Peptide from protein
Sequence: GIAGFKGEQGPKGEP
Position: 459-473
Source molecule (GenBank): P02458.3
Assay category: TCell
Result: Positive
Cell type: T cell hybridoma
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)
Reference: A Snijders; D G Elferink; A Geluk; A L van Der Zanden; K Vos; G M Schreuder; F C Breedveld; R R de Vries; E H Zanelli. "An HLA-DRB1-derived peptide associated with protection against rheumatoid arthritis is naturally processed by human APCs." Journal of immunology (Baltimore, Md. : 1950) (2001).

Epitope: DRB1(68-76)
Chemical type: Peptide from protein
Sequence: LEDERAAVD
Position: 63-71
Source molecule (GenBank): CAB96577.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: DRB1(68-76)
Chemical type: Peptide from protein
Sequence: LEDERAAVD
Position: 63-71
Source molecule (GenBank): CAB96577.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: DRB1(68-76)
Chemical type: Peptide from protein
Sequence: LEDERAAVD
Position: 63-71
Source molecule (GenBank): CAB96577.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Ii p87-101
Chemical type: Peptide from protein
Sequence: VSKMRMATPLLMQAL
Position: 14-28
Source molecule (GenBank): 1MUJ_C
Assay category: MhcBinding
Result: Positive

Epitope: Analog to DRB1(65-75)
Chemical type: Peptide, no natural source
Sequence: KTIAYDEEARR
Assay category: MhcBinding
Result: Negative

Epitope: DRB1(65-79)
Chemical type: Peptide from protein
Sequence: KDILEDERAAVDTY
Position: 60-73
Source molecule (GenBank): CAB96577.1
Assay category: MhcBinding
Result: Positive

Epitope: DRB1(66-79)
Chemical type: Peptide from protein
Sequence: DILEDERAAVDTY
Position: 61-73
Source molecule (GenBank): CAB96577.1
Assay category: MhcBinding
Result: Positive

Epitope: DRB1(67-79)
Chemical type: Peptide from protein
Sequence: ILEDERAAVDTY
Position: 62-73
Source molecule (GenBank): CAB96577.1
Assay category: MhcBinding
Result: Positive

Epitope: DRB1(68-79)
Chemical type: Peptide from protein
Sequence: LEDERAAVDTY
Position: 63-73
Source molecule (GenBank): CAB96577.1
Assay category: MhcBinding
Result: Positive

Epitope: DRB1(69-79)
Chemical type: Peptide from protein
Sequence: EDERAAVDTY
Position: 64-73
Source molecule (GenBank): CAB96577.1
Assay category: MhcBinding
Result: Negative

Epitope: DRB1(67-77)
Chemical type: Peptide from protein
Sequence: ILEDERAAVDT
Position: 62-72
Source molecule (GenBank): CAB96577.1
Assay category: MhcBinding
Result: Positive

Epitope: DRB1(67-76)
Chemical type: Peptide from protein
Sequence: ILEDERAAVD
Position: 62-71
Source molecule (GenBank): CAB96577.1
Assay category: MhcBinding
Result: Positive

Epitope: DRB1(67-75)
Chemical type: Peptide from protein
Sequence: ILEDERAAV
Position: 62-70
Source molecule (GenBank): CAB96577.1
Assay category: MhcBinding
Result: Negative

Epitope: Analog to DRB1(67-78)
Chemical type: Peptide, no natural source
Sequence: ILEDERAAVATY
Assay category: MhcBinding
Result: Negative
Reference: T J Yoo; M K Lee; Y S Min; H J Chiang; K Wang; T Fujiyoshi; T Watanabe; M S Krug; J Seyer; K C Cheng. "Epitope specificity and T cell receptor usage in type II collagen induced autoimmune ear disease." Cellular immunology (1994).

Epitope: Chicken CB11 P1 (p121-147)
Chemical type: Peptide from protein
Sequence: GPTGPLGPKGQTGELGIAGFKGEQGPK
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: lymph node
Culture conditions: Short Term Restimulated

Epitope: Chicken CB11 P1 (p121-147)
Chemical type: Peptide from protein
Sequence: GPTGPLGPKGQTGELGIAGFKGEQGPK
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: lymph node
Culture conditions: Short Term Restimulated

Epitope: Chicken CB11 P2 (p211-247)
Chemical type: Peptide from protein
Sequence: GPAGLAGPKGATGPDGRPGEPGLPGAR
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: lymph node
Culture conditions: Short Term Restimulated

Epitope: Bovine CB11 P2 (p211-247)
Chemical type: Peptide from protein
Sequence: GPAGLAGPKGATGPDGRPGEPGLPGAR
Assay category: TCell
Result: Positive-Low
Cell type: T cell
Tissue: lymph node
Culture conditions: Short Term Restimulated
Reference: Veena Taneja; Marshall Behrens; Ashutosh Mangalam; Marie M Griffiths; Harvinder S Luthra; Chella S David. "New humanized HLA-DR4-transgenic mice that mimic the sex bias of rheumatoid arthritis." Arthritis and rheumatism (2007).

Epitope: human CII 254-273
Chemical type: Peptide from protein
Sequence: QTGKPGIAGFKGEQGPKGEP
Position: 385-404
Assay category: TCell
Result: Positive-Low
Host:  8-12 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: human CII 254-273
Chemical type: Peptide from protein
Sequence: QTGKPGIAGFKGEQGPKGEP
Position: 385-404
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: human CII 254-273
Chemical type: Peptide from protein
Sequence: QTGKPGIAGFKGEQGPKGEP
Position: 385-404
Assay category: TCell
Result: Positive-Low
Host:  8-12 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: human CII 254-273
Chemical type: Peptide from protein
Sequence: QTGKPGIAGFKGEQGPKGEP
Position: 385-404
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: human CII 254-273
Chemical type: Peptide from protein
Sequence: QTGKPGIAGFKGEQGPKGEP
Position: 385-404
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: human CII 254-273
Chemical type: Peptide from protein
Sequence: QTGKPGIAGFKGEQGPKGEP
Position: 385-404
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo
Reference: Sarah T A Roord; Evelien Zonneveld-Huijssoon; Tho Le; Gisella Puga Yung; Eva Koffeman; Arash Ronaghy; Negar Ghahramani; Paola Lanza; Rosario Billetta; Berent J Prakken; Salvatore Albani. "Modulation of T cell function by combination of epitope specific and low dose anticytokine therapy controls autoimmune arthritis." PloS one (2006).

Epitope: HSP60(180-188)
Chemical type: Peptide from protein
Sequence: TFGLQLELT
Position: 180-188
Source molecule (GenBank): CAA17397.1
Assay category: TCell
Result: Positive
Host: M 6-9 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: HSP60(180-188)
Chemical type: Peptide from protein
Sequence: TFGLQLELT
Position: 180-188
Source molecule (GenBank): CAA17397.1
Assay category: TCell
Result: Positive
Host: M 6-9 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: HSP60(180-188)
Chemical type: Peptide from protein
Sequence: TFGLQLELT
Position: 180-188
Source molecule (GenBank): CAA17397.1
Assay category: TCell
Result: Positive
Host: M 6-9 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: HSP60(180-188)
Chemical type: Peptide from protein
Sequence: TFGLQLELT
Position: 180-188
Source molecule (GenBank): CAA17397.1
Assay category: TCell
Result: Negative
Host: M 6-9 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: HSP60(180-188)
Chemical type: Peptide from protein
Sequence: TFGLQLELT
Position: 180-188
Source molecule (GenBank): CAA17397.1
Assay category: TCell
Result: Positive
Host: M 6-9 weeks

Epitope: HSP60(180-188)
Chemical type: Peptide from protein
Sequence: TFGLQLELT
Position: 180-188
Source molecule (GenBank): CAA17397.1
Assay category: TCell
Result: Positive
Host: M 6-9 weeks
Reference: Alexei von Delwig; Catharien M U Hilkens; Daniel M Altmann; Rikard Holmdahl; John D Isaacs; Clifford V Harding; Helen Robertson; Norman McKie; John H Robinson. "Inhibition of macropinocytosis blocks antigen presentation of type II collagen in vitro and in vivo in HLA-DR1 transgenic mice." Arthritis research & therapy (2006).

Epitope: CII<sub>259-273</sub>GalHyL<sub>264</sub>
Chemical type: Peptide from protein
Sequence: GIAGFKGEQGPKGET
Position: 391-405
Source molecule (GenBank): NP_037061.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: CII<sub>259-273</sub>GalHyL<sub>264</sub>
Chemical type: Peptide from protein
Sequence: GIAGFKGEQGPKGET
Position: 391-405
Source molecule (GenBank): NP_037061.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: CII<sub>259-273</sub>
Chemical type: Peptide from protein
Sequence: GIAGFKGEQGPKGET
Position: 391-405
Source molecule (GenBank): NP_037061.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: CII<sub>259-273</sub>
Chemical type: Peptide from protein
Sequence: GIAGFKGEQGPKGET
Position: 391-405
Source molecule (GenBank): NP_037061.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)
Reference: Bo Tang; David D Brand; Zhijun Ma; John M Stuart; Linda K Myers; Andrew H Kang. "Pathogenesis of collagen-induced arthritis: modulation of disease by arthritogenic T-cell epitope location." Immunology (2004).

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Positive
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Positive
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Positive
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Positive
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: CB8 determinant
Chemical type: Peptide from protein
Sequence: GPAGPAGER
Position: 576-584
Source molecule (GenBank): NP_001106695.1
Assay category: TCell
Result: Positive
Reference: D W Hunt; L Corson; H D Barker; J G Levy; R E Petty. "Relationship between collagen-induced and adjuvant arthritis in the Lewis rat." Journal of autoimmunity (1993).

Epitope: 65kD HSP (180-188)
Chemical type: Peptide from protein
Sequence: TFGLQLELT
Position: 180-188
Source molecule (GenBank): YP_976577.1
Assay category: TCell
Result: Negative
Host: M 8-11 weeks

Epitope: 65kD HSP (180-188)
Chemical type: Peptide from protein
Sequence: TFGLQLELT
Position: 180-188
Source molecule (GenBank): YP_976577.1
Assay category: TCell
Result: Positive
Host: M 8-11 weeks
Reference: K L Legge; B Min; N T Potter; H Zaghouani. "Presentation of a T cell receptor antagonist peptide by immunoglobulins ablates activation of T cells by a synthetic peptide or proteins requiring endocytic processing." The Journal of experimental medicine (1997).

Epitope: PLP-LP
Chemical type: Peptide, no natural source
Sequence: HSLGKLLGRPDKF
Assay category: BCell
Result: Positive-Low

Epitope: PLP2 (179-192)
Chemical type: Peptide from protein
Sequence: NTWTTCQSIAFPSK
Position: 179-192
Source molecule (GenBank): CAA30184.1
Assay category: TCell
Result: Positive-Low
Host:  6-8 weeks
Cell type: T cell
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: BCell
Result: Positive

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Positive
Host: F 5-8 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Positive-Low
Host: F 5-8 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Positive
Host:  6-8 weeks
Cell type: T cell
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Positive-Low
Host:  6-8 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo
Reference: Harald Burkhardt; Ulrike Hüffmeier; Bernd Spriewald; Beate Böhm; Rolf Rau; Stefan Kallert; Ake Engström; Rikard Holmdahl; André Reis. "Association between protein tyrosine phosphatase 22 variant R620W in conjunction with the HLA-DRB1 shared epitope and humoral autoimmunity to an immunodominant epitope of cartilage-specific type II collagen in early rheumatoid arthritis." Arthritis and rheumatism (2006).

Epitope: C1<sup>III</sup> 359-369
Chemical type: Peptide from protein
Sequence: ARGLTGRPGDA
Position: 559-569
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive
Host:  mean: 59.8 years

Epitope: C1<sup>III</sup> 359-369
Chemical type: Peptide from protein
Sequence: ARGLTGRPGDA
Position: 559-569
Source molecule (GenBank): NP_001835.3
Assay category: BCell
Result: Positive-Low
Host:  mean: 45 years
Reference: J A Goss; M A Alexander-Miller; J Gorka; M W Flye; J M Connolly; T H Hansen. "Specific prolongation of allograft survival by a T-cell-receptor-derived peptide." Proceedings of the National Academy of Sciences of the United States of America (1993).

Epitope: Vbeta8.2 (39-59)
Chemical type: Peptide from protein
Sequence: DTGHGLRLIHYSYGAGSTEKG
Position: 6-26
Source molecule (GenBank): AAT48671.1
Assay category: TCell
Result: Negative
Host: F

Epitope: Vbeta8.2 (39-59)
Chemical type: Peptide from protein
Sequence: DTGHGLRLIHYSYGAGSTEKG
Position: 6-26
Source molecule (GenBank): AAT48671.1
Assay category: TCell
Result: Positive
Host: F

Epitope: Vbeta8.2 (39-59)
Chemical type: Peptide from protein
Sequence: DTGHGLRLIHYSYGAGSTEKG
Position: 6-26
Source molecule (GenBank): AAT48671.1
Assay category: MhcBinding
Result: Negative

Epitope: V beta 14 (39-59)
Chemical type: Peptide from protein
Sequence: ATGGTLQQLFYSITVGQVESV
Position: 30-50
Source molecule (GenBank): ABA33710.1
Assay category: MhcBinding
Result: Negative

Epitope: MCMV (168-176)
Chemical type: Peptide from protein
Sequence: YPHFMPTNL
Position: 168-176
Source molecule (GenBank): P11210.1
Assay category: MhcBinding
Result: Positive

Epitope: LCMV (118-126)
Chemical type: Peptide from protein
Sequence: RPQASGVYM
Position: 118-126
Source molecule (GenBank): AAL01686.1
Assay category: MhcBinding
Result: Positive
Reference: Suzanne E Berlo; Peter J van Kooten; Corlinda B Ten Brink; Femke Hauet-Broere; Mariëtte A Oosterwegel; Tibor T Glant; W Van Eden; Chris P Broeren. "Naive transgenic T cells expressing cartilage proteoglycan-specific TCR induce arthritis upon in vivo activation." Journal of autoimmunity (2005).

Epitope: hPG P70-5/4E8
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F

Epitope: hPG P70-5/4E8
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell
Tissue: spleen
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: hPG P70-5/4E8
Chemical type: Peptide from protein
Sequence: ATEGRVRVNSAYQDK
Position: 89-103
Source molecule (GenBank): P16112.2
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell
Tissue: spleen
Culture conditions: Cell Line / Clone (Hybridoma)
Reference: H Y Kim; W U Kim; M L Cho; S K Lee; J Youn; S I Kim; W H Yoo; J H Park; J K Min; S H Lee; S H Park; C S Cho. "Enhanced T cell proliferative response to type II collagen and synthetic peptide CII (255-274) in patients with rheumatoid arthritis." Arthritis and rheumatism (1999).

Epitope: CII (255-274)
Chemical type: Peptide from protein
Sequence: TGEPGIAGFKGEQGPKGEPG
Position: 455-474
Source molecule (GenBank): P02458.3
Assay category: TCell
Result: Positive
Host:  22-84 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: CII (255-274)
Chemical type: Peptide from protein
Sequence: TGEPGIAGFKGEQGPKGEPG
Position: 455-474
Source molecule (GenBank): P02458.3
Assay category: TCell
Result: Positive-Low
Host:  21-72 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo