Reference: AeRyon Kim; Tatiana N Boronina; Robert N Cole; Erika Darrah; Scheherazade Sadegh-Nasseri. "Distorted Immunodominance by Linker Sequences or other Epitopes from a Second Protein Antigen During Antigen-Processing." Scientific reports (2017).

Epitope: LSA-NRC 434-453
Chemical type: Peptide, no natural source
Sequence: EDITKYFMKLGGSGSPHHHH
Assay category: MhcLigandElution
Result: Positive

Epitope: HA 259-274
Chemical type: Peptide from protein
Sequence: SNGNFIAPEYAYKIVK
Position: 259-274
Source molecule (GenBank): Q6DQ33.1
Assay category: TCell
Result: Positive
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: HA 259-274
Chemical type: Peptide from protein
Sequence: SNGNFIAPEYAYKIVK
Position: 259-274
Source molecule (GenBank): Q6DQ33.1
Assay category: TCell
Result: Positive
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: HA 259-274
Chemical type: Peptide from protein
Sequence: SNGNFIAPEYAYKIVK
Position: 259-274
Source molecule (GenBank): Q6DQ33.1
Assay category: MhcLigandElution
Result: Positive

Epitope: HA 259-274
Chemical type: Peptide from protein
Sequence: SNGNFIAPEYAYKIVK
Position: 259-274
Source molecule (GenBank): Q6DQ33.1
Assay category: MhcBinding
Result: Positive

Epitope: HA 260-274
Chemical type: Peptide from protein
Sequence: NGNFIAPEYAYKIVK
Position: 260-274
Source molecule (GenBank): Q6DQ33.1
Assay category: MhcLigandElution
Result: Positive

Epitope: LSA-NRC 434-453 Ox8
Chemical type: Peptide, no natural source
Sequence: EDITKYFMKLGGSGSPHHHH
Assay category: MhcLigandElution
Result: Positive

Epitope: LSA 436-449
Chemical type: Peptide, no natural source
Sequence: ITKYFMKLGGSGSP
Assay category: TCell
Result: Positive-Low
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: LSA 436-449
Chemical type: Peptide, no natural source
Sequence: ITKYFMKLGGSGSP
Assay category: TCell
Result: Positive-Low
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: LSA 436-449
Chemical type: Peptide, no natural source
Sequence: ITKYFMKLGGSGSP
Assay category: MhcBinding
Result: Positive

Epitope: LSA 325-338
Chemical type: Peptide from protein
Sequence: YDNFQDEENIGIYK
Position: 162-175
Source molecule (GenBank): AAB59230.1
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: LSA 325-338
Chemical type: Peptide from protein
Sequence: YDNFQDEENIGIYK
Position: 162-175
Source molecule (GenBank): AAB59230.1
Assay category: MhcLigandElution
Result: Positive

Epitope: LSA 309-323
Chemical type: Peptide from protein
Sequence: EEDDEDLDEFKPIVQ
Position: 147-161
Source molecule (GenBank): AAB59230.1
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 78-93
Chemical type: Peptide from protein
Sequence: LTMKAASGSTGDQKVQ
Position: 78-93
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 78-91
Chemical type: Peptide from protein
Sequence: LTMKAASGSTGDQK
Position: 78-91
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 94-105
Chemical type: Peptide from protein
Sequence: ISYYGPKTPPVK
Position: 94-105
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 94-107
Chemical type: Peptide from protein
Sequence: ISYYGPKTPPVKAL
Position: 94-107
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 44-61
Chemical type: Peptide from protein
Sequence: ASPGVVVDIAHSPPAKKK
Position: 44-61
Source molecule (GenBank): AAF82265.1
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: PAD4 44-61
Chemical type: Peptide from protein
Sequence: ASPGVVVDIAHSPPAKKK
Position: 44-61
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 45-61
Chemical type: Peptide from protein
Sequence: SPGVVVDIAHSPPAKKK
Position: 45-61
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 45-60
Chemical type: Peptide from protein
Sequence: SPGVVVDIAHSPPAKK
Position: 45-60
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 44-59
Chemical type: Peptide from protein
Sequence: ASPGVVVDIAHSPPAK
Position: 44-59
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 46-61
Chemical type: Peptide from protein
Sequence: PGVVVDIAHSPPAKKK
Position: 46-61
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 354-368
Chemical type: Peptide from protein
Sequence: IGYIQAPHKTLPVVF
Position: 354-368
Source molecule (GenBank): NP_036519.2
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: PAD4 354-368
Chemical type: Peptide from protein
Sequence: IGYIQAPHKTLPVVF
Position: 354-368
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 354-366
Chemical type: Peptide from protein
Sequence: IGYIQAPHKTLPV
Position: 354-366
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 469-486
Chemical type: Peptide from protein
Sequence: VGHVDEFLSFVPAPDRKG
Position: 469-486
Source molecule (GenBank): NP_036519.2
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: PAD4 469-486
Chemical type: Peptide from protein
Sequence: VGHVDEFLSFVPAPDRKG
Position: 469-486
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 445-462
Chemical type: Peptide from protein
Sequence: QALQDFLSAQQVQAPVKL
Position: 445-462
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 445-461
Chemical type: Peptide from protein
Sequence: QALQDFLSAQQVQAPVK
Position: 445-461
Source molecule (GenBank): NP_036519.2
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: PAD4 445-461
Chemical type: Peptide from protein
Sequence: QALQDFLSAQQVQAPVK
Position: 445-461
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 449-461
Chemical type: Peptide from protein
Sequence: DFLSAQQVQAPVK
Position: 449-461
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 394-405
Chemical type: Peptide from protein
Sequence: RGPQTGGISGLD
Position: 394-405
Source molecule (GenBank): NP_036519.2
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: PAD4 394-405
Chemical type: Peptide from protein
Sequence: RGPQTGGISGLD
Position: 394-405
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 1-17
Chemical type: Peptide from protein
Sequence: MAQGTLIRVTPEQPTHA
Position: 1-17
Source molecule (GenBank): NP_036519.2
Assay category: TCell
Result: Positive
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: PAD4 1-17
Chemical type: Peptide from protein
Sequence: MAQGTLIRVTPEQPTHA
Position: 1-17
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PAD4 analog
Chemical type: Peptide, no natural source
Sequence: YKKAGFTMAQGTLIRVTPEQPTH
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide # 16
Chemical type: Peptide from protein
Sequence: VTLTMKAASGSTGDQ
Position: 76-90
Source molecule (GenBank): AAF82265.1
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Peptide # 16
Chemical type: Peptide from protein
Sequence: VTLTMKAASGSTGDQ
Position: 76-90
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide #17
Chemical type: Peptide from protein
Sequence: KAASGSTGDQKVQIS
Position: 81-95
Source molecule (GenBank): AAF82265.1
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Peptide #17
Chemical type: Peptide from protein
Sequence: KAASGSTGDQKVQIS
Position: 81-95
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide #19
Chemical type: Peptide from protein
Sequence: KVQISYYGPKTPPVK
Position: 91-105
Source molecule (GenBank): NP_036519.2
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Peptide #19
Chemical type: Peptide from protein
Sequence: KVQISYYGPKTPPVK
Position: 91-105
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide #56
Chemical type: Peptide from protein
Sequence: RGPQTGGISGLD
Position: 394-405
Source molecule (GenBank): NP_036519.2
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Peptide #56
Chemical type: Peptide from protein
Sequence: RGPQTGGISGLD
Position: 394-405
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide #58
Chemical type: Peptide from protein
Sequence: MAQGTLIRVTPEQPTHA
Position: 1-17
Source molecule (GenBank): NP_036519.2
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Peptide #58
Chemical type: Peptide from protein
Sequence: MAQGTLIRVTPEQPTHA
Position: 1-17
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide #59
Chemical type: Peptide from protein
Sequence: VGHVDEFLSFVPAPDRKG
Position: 469-486
Source molecule (GenBank): NP_036519.2
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Peptide #59
Chemical type: Peptide from protein
Sequence: VGHVDEFLSFVPAPDRKG
Position: 469-486
Source molecule (GenBank): NP_036519.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide #60
Chemical type: Peptide from protein
Sequence: VTLTMKAASGSTGDQ
Position: 76-90
Source molecule (GenBank): AAF82265.1
Assay category: TCell
Result: Negative
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Peptide #60
Chemical type: Peptide from protein
Sequence: VTLTMKAASGSTGDQ
Position: 76-90
Source molecule (GenBank): AAF82265.1
Assay category: MhcLigandElution
Result: Positive

Epitope: LSA 325-339
Chemical type: Peptide from protein
Sequence: YDNFQDEENIGIYKE
Position: 162-176
Source molecule (GenBank): AAB59230.1
Assay category: MhcLigandElution
Result: Positive

Epitope: LSA 308-323
Chemical type: Peptide from protein
Sequence: EEEDDEDLDEFKPIVQ
Position: 146-161
Source molecule (GenBank): AAB59230.1
Assay category: MhcLigandElution
Result: Positive

Epitope: HA 259-278
Chemical type: Peptide from protein
Sequence: SNGNFIAPEYAYKIVKKGDS
Position: 259-278
Source molecule (GenBank): Q6DQ33.1
Assay category: TCell
Result: Positive
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: HA 259-278
Chemical type: Peptide from protein
Sequence: SNGNFIAPEYAYKIVKKGDS
Position: 259-278
Source molecule (GenBank): Q6DQ33.1
Assay category: MhcLigandElution
Result: Positive