Reference: Hok Yee Chan; Jiajia Zhang; Caroline C Garliss; Abena K Kwaa; Joel N Blankson; Kellie N Smith. "A T Cell Receptor Sequencing-Based Assay Identifies Cross-Reactive Recall CD8<sup>+</sup> T Cell Clonotypes Against Autologous HIV-1 Epitope Variants." Frontiers in immunology (2020).

Epitope: GAG TW10 (240-249) Consensus
Chemical type: Peptide from protein
Sequence: TSTLQEQIGW
Position: 240-249
Source molecule (GenBank): BAA00992.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: GAG TW10 (240-249) autologous variant
Chemical type: Peptide from protein
Sequence: TSTLTEQVAW
Position: 224-233
Source molecule (GenBank): ABC41903.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: GAG TW10 (240-249) autologous variant
Chemical type: Peptide from protein
Sequence: TSTLAEQIAW
Position: 243-252
Source molecule (GenBank): AEQ75931.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: GAG TW10 (240-249) autologous variant
Chemical type: Peptide from protein
Sequence: TSTLTEQIAW
Position: 238-247
Source molecule (GenBank): AEK11173.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: GAG TW10 (240-249) autologous variant
Chemical type: Peptide from protein
Sequence: TSTLAEQMAW
Position: 240-249
Source molecule (GenBank): ADZ33514.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NEF KF9 (82-90) Consensus
Chemical type: Peptide from protein
Sequence: KAAVDLSHF
Position: 81-89
Source molecule (GenBank): Q9WPU2.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NEF KF9 (82-90) Autologous Variant
Chemical type: Peptide from protein
Sequence: KSALDLSHF
Position: 90-98
Source molecule (GenBank): AGL78267.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NEF KF9 (82-90) Common Variant
Chemical type: Peptide from protein
Sequence: KAALDLSHF
Position: 81-89
Source molecule (GenBank): CAA13483.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NEF HW9 (116-124) Consensus
Chemical type: Peptide from protein
Sequence: HTQGYFPDW
Position: 116-124
Source molecule (GenBank): Q9YYU8.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NEF HW9 (116-124) Escape mutant
Chemical type: Peptide from protein
Sequence: NTQGYFPDW
Position: 115-123
Source molecule (GenBank): Q9WPU2.1
Assay category: TCell
Result: Positive
MHC allele types: 268 737 235 242
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo