LiteFold/IEDB huggingface dataset:
Reference: Baolin Yang; Runze Meng; Chonglun Feng; Jingjing Huang; Qiong Li; Xiaoyan Wang; Dabing Zhang. "An Antibody Neutralization Determinant on Domain III and the First α-Helical Domain in the Stem-Anchor Region of Tembusu Virus Envelope Protein." Journal of immunology (Baltimore, Md. : 1950) (2022).

Epitope: 6C8-Epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: A617, P664, P665, F666, S669, F670, W684, H685
Source molecule (GenBank): QEP99663.1
Assay category: BCell
Result: Positive
Host:  5 weeks

Epitope: 6C8-Epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: A617, P664, P665, F666, S669, F670, W684, H685
Source molecule (GenBank): QEP99663.1
Assay category: BCell
Result: Positive
Host:  5 weeks

Epitope: 6C8-Epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: A617, P664, P665, F666, S669, F670, W684, H685
Source molecule (GenBank): QEP99663.1
Assay category: BCell
Result: Positive
Host:  5 weeks

Epitope: 6C8-Epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: A617, P664, P665, F666, S669, F670, W684, H685
Source molecule (GenBank): QEP99663.1
Assay category: BCell
Result: Positive
Host:  5 weeks
Reference: Yingyin Liao; Liang Xue; Junshan Gao; Yueting Zuo; Yanhui Liang; Yueting Jiang; Weicheng Cai; Jiale Yang; Jumei Zhang; Yu Ding; Moutong Chen; Aiwu Wu; Xiaoxia Kou; Qingping Wu. "Rapid screening for antigenic characterization of GII.17 norovirus strains with variations in capsid gene." Gut pathogens (2022).

Epitope: 2D11 epitope
Chemical type: Peptide from protein
Sequence: QINQRD
Position: 293-298
Source molecule (GenBank): ALQ28762.1
Assay category: BCell
Result: Positive

Epitope: 2D11 epitope
Chemical type: Peptide from protein
Sequence: QINQRD
Position: 293-298
Source molecule (GenBank): ALQ28762.1
Assay category: BCell
Result: Positive

Epitope: 2D11 epitope
Chemical type: Peptide from protein
Sequence: QINQRD
Position: 293-298
Source molecule (GenBank): ALQ28762.1
Assay category: BCell
Result: Positive

Epitope: 2D11 epitope
Chemical type: Peptide from protein
Sequence: QINQRD
Position: 293-298
Source molecule (GenBank): ALQ28762.1
Assay category: BCell
Result: Positive
Reference: Weeraya Thongkum; Kanyarat Thongheang; Chatchai Tayapiwatana. "The Occluded Epitope Residing in Spike Receptor-Binding Motif Is Essential for Cross-Neutralization of SARS-CoV-2 Delta Variant." Current issues in molecular biology (2022).

Epitope: W436
Chemical type: Discontinuous protein residues
Discontinuous residues: W436
Source molecule (GenBank): YP_009724390.1
Assay category: BCell
Result: Positive

Epitope: W436
Chemical type: Discontinuous protein residues
Discontinuous residues: W436
Source molecule (GenBank): YP_009724390.1
Assay category: BCell
Result: Positive
Reference: Jian He; Yu Huo; Zhikun Zhang; Yiqun Luo; Xiuli Liu; Qiaoying Chen; Pan Wu; Wei Shi; Tao Wu; Chao Tang; Huixue Wang; Lan Li; Xiyu Liu; Yong Huang; Yongxiang Zhao; Lu Gan; Bing Wang; Liping Zhong. "Generation of Gal-enhanced bifunctional tumor vaccine." Acta pharmaceutica Sinica. B (2022).

Epitope: alpha-1,3-galactosyl epitope (αGal)
Chemical type: Carbohydrate
Assay category: TCell
Result: Positive
Host:  23-26 years
Cell type: T cell
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: alpha-1,3-galactosyl epitope (αGal)
Chemical type: Carbohydrate
Assay category: TCell
Result: Positive
Host:  23-26 years
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: alpha-1,3-galactosyl epitope (αGal)
Chemical type: Carbohydrate
Assay category: TCell
Result: Positive
Host:  23-26 years
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: alpha-1,3-galactosyl epitope (αGal)
Chemical type: Carbohydrate
Assay category: TCell
Result: Positive
Host:  23-26 years
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Philip C Simister; Ellen C Border; João F Vieira; Nicholas J Pumphrey. "Structural insights into engineering a T-cell receptor targeting MAGE-A10 with higher affinity and specificity for cancer immunotherapy." Journal for immunotherapy of cancer (2022).

Epitope: MAGE-A10-GLY 9-mer
Chemical type: Peptide from protein
Sequence: GLYDGMEHL
Position: 254-262
Source molecule (GenBank): P43363.2
Assay category: TCell
Result: Positive
Quantitative measurement: 1.82

Epitope: MAGE-A10-GLY 9-mer
Chemical type: Peptide from protein
Sequence: GLYDGMEHL
Position: 254-262
Source molecule (GenBank): P43363.2
Assay category: TCell
Result: Positive
Quantitative measurement: 2.04

Epitope: MAGE-A10-GLY 9-mer
Chemical type: Peptide from protein
Sequence: GLYDGMEHL
Position: 254-262
Source molecule (GenBank): P43363.2
Assay category: TCell
Result: Positive
Quantitative measurement: 1.54

Epitope: MAGE-A10-GLY 9-mer
Chemical type: Peptide from protein
Sequence: GLYDGMEHL
Position: 254-262
Source molecule (GenBank): P43363.2
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 1.82

Epitope: MAGE-A10-GLY 9-mer
Chemical type: Peptide from protein
Sequence: GLYDGMEHL
Position: 254-262
Source molecule (GenBank): P43363.2
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.04

Epitope: MAGE-A10-GLY 9-mer
Chemical type: Peptide from protein
Sequence: GLYDGMEHL
Position: 254-262
Source molecule (GenBank): P43363.2
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 1.54
Reference: Shimpei Maruoka; Toshiyasu Ojima; Hiromitsu Iwamoto; Junya Kitadani; Hirotaka Tabata; Shinta Tominaga; Masahiro Katsuda; Keiji Hayata; Akihiro Takeuchi; Hiroki Yamaue. "Tumor RNA transfected DCs derived from iPS cells elicit cytotoxicity against cancer cells induced from colorectal cancer patients in vitro." Scientific reports (2022).

Epitope: NMT1 A283V
Chemical type: Peptide, no natural source
Sequence: FQAVYTVGV
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: PARP4 L785F
Chemical type: Peptide, no natural source
Sequence: FTMSIEMPYV
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: SMAD2 T8M
Chemical type: Peptide, no natural source
Sequence: SILPFMPPV
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: PWP1 R456Q
Chemical type: Peptide, no natural source
Sequence: LQVWDISTV
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: STT3A R300Q
Chemical type: Peptide, no natural source
Sequence: FQSVISLV
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: EFTUD2 T112M-1
Chemical type: Peptide, no natural source
Sequence: MVYEMDFL
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: EFTUD2 T112M-2
Chemical type: Peptide, no natural source
Sequence: MVYEMDFLA
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: PLXNB2 V1284I
Chemical type: Peptide, no natural source
Sequence: YTDRIFFL
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: STT3A R300Q
Chemical type: Peptide, no natural source
Sequence: QQFEVLFQSV
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NUP210 P966L
Chemical type: Peptide, no natural source
Sequence: FLAPAKAVV
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IFRD2 R180C
Chemical type: Peptide, no natural source
Sequence: FLLERCLTL
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NUP210 P966L
Chemical type: Peptide, no natural source
Sequence: FLAPAKAV
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Andrew S Truong; Mi Zhou; Bhavani Krishnan; Takanobu Utsumi; Ujjawal Manocha; Kyle G Stewart; Wolfgang Beck; Tracy L Rose; Matthew I Milowsky; Xiaping He; Christof C Smith; Lisa M Bixby; Charles M Perou; Sara E Wobker; Sean T Bailey; Benjamin G Vincent; William Y Kim. "Entinostat induces antitumor immune responses through immune editing of tumor neoantigens." The Journal of clinical investigation (2021).

Epitope: Car12
Chemical type: Peptide, no natural source
Sequence: IATPFSMML
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Grin1
Chemical type: Peptide, no natural source
Sequence: TGPLFKRALM
Assay category: TCell
Result: Positive-High
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Has2
Chemical type: Peptide, no natural source
Sequence: VSAWFTILL
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Ryoka Kokubu; Shiho Ohno; Hirohide Kuratani; Yuka Takahashi; Noriyoshi Manabe; Hiroki Shimizu; Yasunori Chiba; Kaori Denda-Nagai; Makoto Tsuiji; Tatsuro Irimura; Yoshiki Yamaguchi. "-Glycan-Dependent Interaction between MUC1 Glycopeptide and MY.1E12 Antibody by NMR, Molecular Dynamics and Docking Simulations." International journal of molecular sciences (2022).

Epitope: MUC1(27AA)
Chemical type: Peptide from protein
Sequence: APPAHGVTSAPDTRPAPGSTAPPAHGV
Position: 132-158
Source molecule (GenBank): P15941.2
Assay category: BCell
Result: Positive
Host: F 8 weeks

Epitope: MUC1(20AA)
Chemical type: Peptide from protein
Sequence: APPAHGVTSAPDTRPAPGST
Position: 132-151
Source molecule (GenBank): P15941.2
Assay category: BCell
Result: Positive
Host: F 8 weeks

Epitope: MUC1(9AA)
Chemical type: Peptide from protein
Sequence: AHGVTSAPD
Position: 135-143
Source molecule (GenBank): P15941.2
Assay category: BCell
Result: Positive
Host: F 8 weeks
Reference: Pouya Safarzadeh Kozani; Mohammad Ali Shokrgozar; Mehdi Evazalipour; Mehryar Habibi Roudkenar. "CRISPR/Cas9-medaited knockout of endogenous T-cell receptor in Jurkat cells and generation of NY-ESO-1-specific T cells: An in vitro study." International immunopharmacology (2022).

Epitope: NY-ESO-1
Chemical type: Peptide from protein
Sequence: SLLMWITQC
Position: 157-165
Source molecule (GenBank): CAA05908.1
Assay category: TCell
Result: Positive
Cell type: Jurkat cell (T cell)
Tissue: blood
Culture conditions: Engineered

Epitope: NY-ESO-1
Chemical type: Peptide from protein
Sequence: SLLMWITQC
Position: 157-165
Source molecule (GenBank): CAA05908.1
Assay category: TCell
Result: Positive
Cell type: Jurkat cell (T cell)
Tissue: blood
Culture conditions: Engineered
Reference: Terence L Kirley; Andrew B Norman. "Critical evaluation of fluorescent dyes to evaluate the stability and ligand binding properties of an anti-cocaine mAb, h2E2." Journal of immunological methods (2022).

Epitope: Cocaine
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 26.0
Reference: Amy L Anderson; Benjamin D Dubanksy; Lindsay B Wilson; Robyn L Tanguay; Charles D Rice. "Development and Applications of a Zebrafish () CYP1A-Targeted Monoclonal Antibody (CRC4) with Reactivity across Vertebrate Taxa: Evidence for a Conserved CYP1A Epitope." Toxics (2022).

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 283-291
Chemical type: Peptide from protein
Sequence: IRDITDSLI
Position: 283-291
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive

Epitope: ZF CYP1A 264-294
Chemical type: Peptide from protein
Sequence: SKFMKRLVMEHYDTFDKDNIRDITDSLINHC
Position: 264-294
Source molecule (GenBank): BAB90841.1
Assay category: BCell
Result: Positive
Reference: Shahnawaz Rehman; Jiantao Song; Mohammad Faisal; Abdulrahman A Alatar; Firoz Akhter; Saheem Ahmad; Bo Hu. "The Neoepitopes on Methylglyoxal- (MG-) Glycated Fibrinogen Generate Autoimmune Response: Its Role in Diabetes, Atherosclerosis, and Diabetic Atherosclerosis Subjects." Oxidative medicine and cellular longevity (2021).

Epitope: Methylglyoxal
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative
Host:  mean: 30 years

Epitope: Methylglyoxal
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative
Host:  mean: 30 years

Epitope: Methylglyoxal
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Host:  mean: 55.4 years

Epitope: Methylglyoxal
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Host:  mean: 55.4 years

Epitope: Methylglyoxal
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Host:  mean: 53.4 years

Epitope: Methylglyoxal
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Host:  mean: 53.4 years

Epitope: Methylglyoxal
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Host:  mean: 59 years

Epitope: Methylglyoxal
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Host:  mean: 59 years
Reference: Denis Tvorogov; Chloe A L Thompson-Peach; Johannes Foßelteder; Mara Dottore; Frank Stomski; Suraiya A Onnesha; Kelly Lim; Paul A B Moretti; Stuart M Pitson; David M Ross; Andreas Reinisch; Daniel Thomas; Angel F Lopez. "Targeting human CALR-mutated MPN progenitors with a neoepitope-directed monoclonal antibody." EMBO reports (2022).

Epitope: MAb 4D7 epitope on C-terminal mutant CALR neoepitope
Chemical type: Peptide, no natural source
Sequence: MMRTKMRMRRM
Assay category: BCell
Result: Positive

Epitope: MAb 4D7 epitope on C-terminal mutant CALR neoepitope
Chemical type: Peptide, no natural source
Sequence: MMRTKMRMRRM
Assay category: BCell
Result: Positive

Epitope: MAb 4D7 epitope on C-terminal mutant CALR neoepitope
Chemical type: Peptide, no natural source
Sequence: MMRTKMRMRRM
Assay category: BCell
Result: Positive

Epitope: MAb 4D7 epitope on C-terminal mutant CALR neoepitope
Chemical type: Peptide, no natural source
Sequence: MMRTKMRMRRM
Assay category: BCell
Result: Positive

Epitope: MAb 4D7 epitope on C-terminal mutant CALR neoepitope
Chemical type: Peptide, no natural source
Sequence: MMRTKMRMRRM
Assay category: BCell
Result: Positive
Quantitative measurement: 1.53

Epitope: MAb 4D7 epitope on C-terminal mutant CALR neoepitope
Chemical type: Peptide, no natural source
Sequence: MMRTKMRMRRM
Assay category: BCell
Result: Negative

Epitope: MAb 4D7 epitope on C-terminal mutant CALR neoepitope
Chemical type: Peptide, no natural source
Sequence: MMRTKMRMRRM
Assay category: BCell
Result: Negative
Reference: Xiao Zhang; Junping Hong; Ling Zhong; Qian Wu; Shanshan Zhang; Qianying Zhu; Haiwen Chen; Dongmei Wei; Rui Li; Wanlin Zhang; Xinyu Zhang; Guosong Wang; Xiang Zhou; Junyu Chen; Yinfeng Kang; Zhenghui Zha; Xiaobing Duan; Yang Huang; Cong Sun; Xiangwei Kong; Yan Zhou; Yanhong Chen; Xiaoping Ye; Qisheng Feng; Shaowei Li; Tong Xiang; Song Gao; Mu-Sheng Zeng; Qingbing Zheng; Yixin Chen; Yi-Xin Zeng; Ningshao Xia; Miao Xu. "Protective anti-gB neutralizing antibodies targeting two vulnerable sites for EBV-cell membrane fusion." Proceedings of the National Academy of Sciences of the United States of America (2022).

Epitope: 3A5 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: R539, K540, T565, T567, H610, F611, T613
Source molecule (GenBank): BAU51603.1
Assay category: BCell
Result: Positive
Host:  38-64 years

Epitope: 3A5 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: R539, K540, T565, T567, H610, F611, T613
Source molecule (GenBank): BAU51603.1
Assay category: BCell
Result: Positive
Host:  38-64 years

Epitope: 3A5 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: R539, K540, T565, T567, H610, F611, T613
Source molecule (GenBank): BAU51603.1
Assay category: BCell
Result: Positive
Host:  10 weeks

Epitope: 3A5 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: R539, K540, T565, T567, H610, F611, T613
Source molecule (GenBank): BAU51603.1
Assay category: BCell
Result: Positive
Host:  10 weeks

Epitope: 3A5 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: R539, K540, T565, T567, H610, F611, T613
Source molecule (GenBank): BAU51603.1
Assay category: BCell
Result: Positive
Host:  10 weeks

Epitope: 3A5 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: R539, K540, T565, T567, H610, F611, T613
Source molecule (GenBank): BAU51603.1
Assay category: BCell
Result: Positive
Host:  10 weeks

Epitope: 3A5 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: R539, K540, T565, T567, H610, F611, T613
Source molecule (GenBank): BAU51603.1
Assay category: BCell
Result: Positive
Host:  10 weeks

Epitope: 3A5 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: R539, K540, T565, T567, H610, F611, T613
Source molecule (GenBank): BAU51603.1
Assay category: BCell
Result: Positive
Host:  10 weeks
Reference: Guy Mechrez; Karthik Ananth Mani; Abhijit Saha; Oded Lachman; Neta Luria; Ori Molad; Liliya Kotliarevski; Einat Zelinger; Elisheva Smith; Noga Yaakov; Dalia Shabashov Stone; Meital Reches; Aviv Dombrovsky. "Platform for Active Vaccine Formulation Using a Two-Mode Enhancement Mechanism of Epitope Presentation by Pickering Emulsion." ACS applied bio materials (2022).

Epitope: SARS-CoV2-S1 epitope
Chemical type: Peptide from protein
Sequence: CASYQTQTNSPRRAR
Position: 671-685
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Host: F 6-7 weeks
Reference: Aiping Wang; Yuanyuan Tian; Hongliang Liu; Peiyang Ding; Yumei Chen; Chao Liang; Yongkun Du; Dawei Jiang; Xifang Zhu; Jiajia Yin; Gaiping Zhang. "Identification of three conserved linear B cell epitopes on the SARS-CoV-2 spike protein." Emerging microbes & infections (2022).

Epitope: Spike 286-297_S12.2
Chemical type: Peptide from protein
Sequence: TDAVDCALDPLS
Position: 286-297
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks

Epitope: Spike 464-475_S19.2
Chemical type: Peptide from protein
Sequence: FERDISTEIYQA
Position: 464-475
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks

Epitope: Spike 1202-1213_S49.4
Chemical type: Peptide from protein
Sequence: ELGKYEQYIKWP
Position: 1202-1213
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks
Reference: Yuki Okada; Hiroyuki Suzuki; Mika K Kaneko; Yukinari Kato. "Epitope Mapping of an Anti-elephant Podoplanin Monoclonal Antibody (PMab-295) Using Enzyme-Linked Immunosorbent Assay." Monoclonal antibodies in immunodiagnosis and immunotherapy (2022).

Epitope: elePDPN 38-51
Chemical type: Peptide from protein
Sequence: EGGMVIPGVEDNMV
Position: 38-51
Source molecule (GenBank): XP_010591407.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: elePDPN 38-51
Chemical type: Peptide from protein
Sequence: EGGMVIPGVEDNMV
Position: 38-51
Source molecule (GenBank): XP_010591407.1
Assay category: BCell
Result: Positive
Host: F 6 weeks
Reference: Tyler N Starr; Allison J Greaney; William W Hannon; Andrea N Loes; Kevin Hauser; Josh R Dillen; Elena Ferri; Ariana Ghez Farrell; Bernadeta Dadonaite; Matthew McCallum; Kenneth A Matreyek; Davide Corti; David Veesler; Gyorgy Snell; Jesse D Bloom. "Shifting mutational constraints in the SARS-CoV-2 receptor-binding domain during viral evolution." Science (New York, N.Y.) (2022).

Epitope: Epitope of S304 Fab on SARS-CoV-2 Beta RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: Y366, N367, F371, F374, K375, C376, Y377, G378, V379, S380, P381, T382, K383, L387, P409, Q411, D424, D425, F426, L514, K525
Source molecule (GenBank): QWW93436.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.7

Epitope: Epitope of S309 Fab on SARS-CoV-2 Beta RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: N331, L332, P334, G336, E337, N340, A341, T342, R343, K353, R354, S356, C358, L438
Source molecule (GenBank): QWW93436.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.7