LiteFold/IEDB huggingface dataset:
Reference: Nicholas C Wu; Meng Yuan; Hejun Liu; Chang-Chun D Lee; Xueyong Zhu; Sandhya Bangaru; Jonathan L Torres; Tom G Caniels; Philip J M Brouwer; Marit J van Gils; Rogier W Sanders; Andrew B Ward; Ian A Wilson. "An Alternative Binding Mode of IGHV3-53 Antibodies to the SARS-CoV-2 Receptor Binding Domain." Cell reports (2020).

Epitope: Epitope of COVA2-04 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: R403, D405, T415, G416, K417, D420, Y421, Y453, L455, F456, R457, K458, N460, Y473, A475, G476, S477, F486, N487, Y489, Q493, S494, Y495, G496, T500, N501, G502, Y505
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Quantitative measurement: 39.6
Host: F 44 years

Epitope: Epitope of COVA2-04 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: R403, D405, T415, G416, K417, D420, Y421, Y453, L455, F456, R457, K458, N460, Y473, A475, G476, S477, F486, N487, Y489, Q493, S494, Y495, G496, T500, N501, G502, Y505
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.36
Host: F 44 years

Epitope: Epitope of COVA2-39 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: G446, Y449, F456, A475, V483, E484, G485, F486, N487, Y489, Q493
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Quantitative measurement: 1.71
Host: F 44 years

Epitope: Epitope of COVA2-39 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: G446, Y449, F456, A475, V483, E484, G485, F486, N487, Y489, Q493
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Quantitative measurement: 20.9
Host: F 44 years
Reference: Soultan Al-Halifa; Ximena Zottig; Margaryta Babych; Mélanie Côté-Cyr; Steve Bourgault; Denis Archambault. "Harnessing the Activation of Toll-Like Receptor 2/6 by Self-Assembled Cross-β Fibrils to Design Adjuvanted Nanovaccines." Nanomaterials (Basel, Switzerland) (2020).

Epitope: M2e
Chemical type: Peptide, no natural source
Sequence: SLLTEVETPIRNEWGSRSNDSSD
Assay category: BCell
Result: Positive-High
Host: F 6 weeks
Reference: Ying Ma; Kang Tang; Yusi Zhang; Chunmei Zhang; Linfeng Cheng; Fanglin Zhang; Ran Zhuang; Boquan Jin; Yun Zhang. "Protective CD8<sup>+</sup> T-cell response against Hantaan virus infection induced by immunization with designed linear multi-epitope peptides in HLA-A2.1/K<sup>b</sup> transgenic mice." Virology journal (2020).

Epitope: VV9
Chemical type: Peptide, no natural source
Sequence: KSSVMASLVWPV
Assay category: TCell
Result: Positive
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: VV9
Chemical type: Peptide, no natural source
Sequence: KSSVMASLVWPV
Assay category: TCell
Result: Negative
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: VV9
Chemical type: Peptide, no natural source
Sequence: KSSVMASLVWPV
Assay category: TCell
Result: Negative
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: VV9
Chemical type: Peptide, no natural source
Sequence: KSSVMASLVWPV
Assay category: TCell
Result: Positive
Host: M 6-8 weeks

Epitope: PADRE-VV9
Chemical type: Peptide, no natural source
Sequence: KSSAKXVAAWTLKAAAVMASLVWPV
Assay category: TCell
Result: Positive
Host: M 6-8 weeks

Epitope: PADRE-VV9
Chemical type: Peptide, no natural source
Sequence: KSSAKXVAAWTLKAAAVMASLVWPV
Assay category: TCell
Result: Positive
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PADRE-VV9
Chemical type: Peptide, no natural source
Sequence: KSSAKXVAAWTLKAAAVMASLVWPV
Assay category: TCell
Result: Positive
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PADRE-VV9
Chemical type: Peptide, no natural source
Sequence: KSSAKXVAAWTLKAAAVMASLVWPV
Assay category: TCell
Result: Positive
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Maiko Matsushita; Saku Saito; Shinya Yokoe; Daiju Ichikawa; Yutaka Hattori. "Characteristics of a Novel Target Antigen Against Myeloma Cells for Immunotherapy." Vaccines (2020).

Epitope: CXorf48 49–57
Chemical type: Peptide from protein
Sequence: DYGMIDESI
Position: 49-57
Source molecule (GenBank): Q8WUE5.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: CXorf48 49–57
Chemical type: Peptide from protein
Sequence: DYGMIDESI
Position: 49-57
Source molecule (GenBank): Q8WUE5.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: CXorf48 49–57
Chemical type: Peptide from protein
Sequence: DYGMIDESI
Position: 49-57
Source molecule (GenBank): Q8WUE5.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: CXorf48 49–57
Chemical type: Peptide from protein
Sequence: DYGMIDESI
Position: 49-57
Source molecule (GenBank): Q8WUE5.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: CXorf48 49–57
Chemical type: Peptide from protein
Sequence: DYGMIDESI
Position: 49-57
Source molecule (GenBank): Q8WUE5.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Kazuhiro Nagai; Tomohiko Adachi; Hiroshi Harada; Susumu Eguchi; Haruo Sugiyama; Yasushi Miyazaki. "Dendritic Cell-based Immunotherapy Pulsed With Wilms Tumor 1 Peptide and Mucin 1 as an Adjuvant Therapy for Pancreatic Ductal Adenocarcinoma After Curative Resection: A Phase I/IIa Clinical Trial." Anticancer research (2020).

Epitope: mutant WT1 peptide
Chemical type: Peptide, no natural source
Sequence: CYTWNQMNL
Assay category: TCell
Result: Positive
Host:  59-76 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Wout Oosterheert; Katerina T Xenaki; Viviana Neviani; Wouter Pos; Sofia Doulkeridou; Jip Manshande; Nicholas M Pearce; Loes Mj Kroon-Batenburg; Martin Lutz; Paul Mp van Bergen En Henegouwen; Piet Gros. "Implications for tetraspanin-enriched microdomain assembly based on structures of CD9 with EWI-F." Life science alliance (2020).

Epitope: Epitope of nanobody 4E8 on tetraspanin CD9
Chemical type: Discontinuous protein residues
Discontinuous residues: Y129, G157, G158, V159, E160, Q161, S164, L173, E174, T175, F176, T177, V178
Source molecule (GenBank): P21926.4
Assay category: BCell
Result: Positive
Quantitative measurement: 2.01

Epitope: Epitope of nanobody 4E8 on tetraspanin CD9
Chemical type: Discontinuous protein residues
Discontinuous residues: Y129, G157, G158, V159, E160, Q161, S164, L173, E174, T175, F176, T177, V178
Source molecule (GenBank): P21926.4
Assay category: BCell
Result: Positive
Quantitative measurement: 1.33
Reference: Yuliana A Mokrushina; Andrey V Golovin; Ivan V Smirnov; Spyros D Chatziefthimiou; Anastasia V Stepanova; Tatyana V Bobik; Arthur O Zalevsky; Alexander S Zlobin; Kirill A Konovalov; Stanislav S Terekhov; Alexey V Stepanov; Sofiya O Pipiya; Olga G Shamborant; Ekaterina Round; Alexey A Belogurov; Gleb Bourenkov; Alexander A Makarov; Matthias Wilmanns; Jia Xie; G Michael Blackburn; Alexander G Gabibov; Richard A Lerner. "Multiscale computation delivers organophosphorus reactivity and stereoselectivity to immunoglobulin scavengers." Proceedings of the National Academy of Sciences of the United States of America (2020).

Epitope: Diethyl phosphonate (DEP)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 170000.0

Epitope: Diethyl phosphonate (DEP)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 1350000.0

Epitope: Diethyl phosphonate (DEP)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 1.65

Epitope: Diethyl phosphonate (DEP)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 2.0

Epitope: Diethyl phosphonate (DEP)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 1.4

Epitope: Diethyl phosphonate (DEP)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive

Epitope: Paraoxon (POX)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 170000.0

Epitope: Paraoxon (POX)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 1350000.0

Epitope: rac-XOP (p-nitrophenyl 8-methyl-8-azabicyclo[3.2.1]octyl phenylphosphonate)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 2.2

Epitope: rac-XOP (p-nitrophenyl 8-methyl-8-azabicyclo[3.2.1]octyl phenylphosphonate)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive

Epitope: rac-XOP (p-nitrophenyl 8-methyl-8-azabicyclo[3.2.1]octyl phenylphosphonate)
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Reference: Xiaofeng Qi; Lucas Friedberg; Ryan De Bose-Boyd; Tao Long; Xiaochun Li. "Sterols in an intramolecular channel of Smoothened mediate Hedgehog signaling." Nature chemical biology (2020).

Epitope: Epitope of scFv16 on Gi protein heterotrimer
Chemical type: Region on multi-chain protein
Discontinuous residues: A: L5, S6, A7, E8, D9, A11, A12, E14, R15, M18; B: R68, L69, R129, E130, G131
Source molecule (GenBank): P63096.2
Assay category: BCell
Result: Positive

Epitope: Epitope of scFv16 on Gi protein heterotrimer
Chemical type: Region on multi-chain protein
Discontinuous residues: A: L5, S6, A7, E8, D9, A11, A12, E14, R15, M18; B: R68, L69, R129, E130, G131
Source molecule (GenBank): P63096.2
Assay category: BCell
Result: Positive

Epitope: Epitope of scFv16 on Gi protein heterotrimer
Chemical type: Region on multi-chain protein
Discontinuous residues: A: L5, S6, A7, E8, D9, A11, A12, E14, R15, M18; B: R68, L69, R129, E130, G131
Source molecule (GenBank): P63096.2
Assay category: BCell
Result: Positive

Epitope: Epitope of scFv16 on Gi protein heterotrimer
Chemical type: Region on multi-chain protein
Discontinuous residues: A: L5, S6, A7, E8, D9, A11, A12, E14, R15, M18; B: R68, L69, R129, E130, G131
Source molecule (GenBank): P63096.2
Assay category: BCell
Result: Positive
Reference: Avery E Sears; Stefan Albiez; Sahil Gulati; Benlian Wang; Philip Kiser; Lubomir Kovacik; Andreas Engel; Henning Stahlberg; Krzysztof Palczewski. "Single particle cryo-EM of the complex between interphotoreceptor retinoid-binding protein and a monoclonal antibody." FASEB journal : official publication of the Federation of American Societies for Experimental Biology (2020).

Epitope: Epitope of mAb5 Fab on IRBP
Chemical type: Discontinuous protein residues
Discontinuous residues: E412, P414, E415, D416, E417, A418, V419, R420, R421, A422, L423, V424, D425, S426, V427, Q429, Q461
Source molecule (GenBank): P12661.1
Assay category: BCell
Result: Positive
Host: F 8 weeks

Epitope: Epitope of mAb5 Fab on IRBP
Chemical type: Discontinuous protein residues
Discontinuous residues: E412, P414, E415, D416, E417, A418, V419, R420, R421, A422, L423, V424, D425, S426, V427, Q429, Q461
Source molecule (GenBank): P12661.1
Assay category: BCell
Result: Positive
Host: F 8 weeks

Epitope: Epitope of mAb5 Fab on IRBP
Chemical type: Discontinuous protein residues
Discontinuous residues: E412, P414, E415, D416, E417, A418, V419, R420, R421, A422, L423, V424, D425, S426, V427, Q429, Q461
Source molecule (GenBank): P12661.1
Assay category: BCell
Result: Positive
Host: F 8 weeks

Epitope: Epitope of mAb5 Fab on IRBP
Chemical type: Discontinuous protein residues
Discontinuous residues: E412, P414, E415, D416, E417, A418, V419, R420, R421, A422, L423, V424, D425, S426, V427, Q429, Q461
Source molecule (GenBank): P12661.1
Assay category: BCell
Result: Positive
Quantitative measurement: 53.54
Host: F 8 weeks

Epitope: Epitope of mAb5 Fab on IRBP
Chemical type: Discontinuous protein residues
Discontinuous residues: E412, P414, E415, D416, E417, A418, V419, R420, R421, A422, L423, V424, D425, S426, V427, Q429, Q461
Source molecule (GenBank): P12661.1
Assay category: BCell
Result: Positive
Quantitative measurement: 471000.0
Host: F 8 weeks

Epitope: Epitope of mAb5 Fab on IRBP
Chemical type: Discontinuous protein residues
Discontinuous residues: E412, P414, E415, D416, E417, A418, V419, R420, R421, A422, L423, V424, D425, S426, V427, Q429, Q461
Source molecule (GenBank): P12661.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.0252
Host: F 8 weeks
Reference: Matthew D Lauver; Daniel J Goetschius; Colleen S Netherby-Winslow; Katelyn N Ayers; Ge Jin; Daniel G Haas; Elizabeth L Frost; Sung Hyun Cho; Carol M Bator; Stephanie M Bywaters; Neil D Christensen; Susan L Hafenstein; Aron E Lukacher. "Antibody escape by polyomavirus capsid mutation facilitates neurovirulence." eLife (2020).

Epitope: Epitope of 8A7H5 Fab on polyomavirus VP1
Chemical type: Region on multi-chain protein
Discontinuous residues: A: T68, E69, R78, G79, N81, T84, E92; B: F142, L152, R293, N294, Y295, V297
Source molecule (GenBank): AAA93236.1
Assay category: BCell
Result: Positive

Epitope: Epitope of 8A7H5 Fab on polyomavirus VP1
Chemical type: Region on multi-chain protein
Discontinuous residues: A: T68, E69, R78, G79, N81, T84, E92; B: F142, L152, R293, N294, Y295, V297
Source molecule (GenBank): AAA93236.1
Assay category: BCell
Result: Positive

Epitope: Epitope of 8A7H5 Fab on polyomavirus VP1
Chemical type: Region on multi-chain protein
Discontinuous residues: A: T68, E69, R78, G79, N81, T84, E92; B: F142, L152, R293, N294, Y295, V297
Source molecule (GenBank): AAA93236.1
Assay category: BCell
Result: Positive

Epitope: Epitope of 8A7H5 Fab on polyomavirus VP1
Chemical type: Region on multi-chain protein
Discontinuous residues: A: T68, E69, R78, G79, N81, T84, E92; B: F142, L152, R293, N294, Y295, V297
Source molecule (GenBank): AAA93236.1
Assay category: BCell
Result: Positive
Host:  6-15 weeks

Epitope: Epitope of 8A7H5 Fab on polyomavirus VP1
Chemical type: Region on multi-chain protein
Discontinuous residues: A: T68, E69, R78, G79, N81, T84, E92; B: F142, L152, R293, N294, Y295, V297
Source molecule (GenBank): AAA93236.1
Assay category: BCell
Result: Positive
Epitope: SARS-Cov2_M(69-81)
Chemical type: Peptide from protein
Sequence: AVYRINWITGGIA
Position: 69-81
Source molecule (GenBank): 1796318601
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_S(413-425)
Chemical type: Peptide from protein
Sequence: GQTGKIADYNYKL
Position: 413-425
Source molecule (GenBank): 1796318598
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_N(357-369)
Chemical type: Peptide from protein
Sequence: IDAYKTFPPTEPK
Position: 357-369
Source molecule (GenBank): 1798174255
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_N(361-373)
Chemical type: Peptide from protein
Sequence: KTFPPTEPKKDKK
Position: 361-373
Source molecule (GenBank): 1798174255
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_M(133-145)
Chemical type: Peptide from protein
Sequence: LLESELVIGAVIL
Position: 133-145
Source molecule (GenBank): 1796318601
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_M(145-157)
Chemical type: Peptide from protein
Sequence: LRGHLRIAGHHLG
Position: 145-157
Source molecule (GenBank): 1796318601
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_M(5-17)
Chemical type: Peptide from protein
Sequence: NGTITVEELKKLL
Position: 5-17
Source molecule (GenBank): 1796318601
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_M(177-189)
Chemical type: Peptide from protein
Sequence: SYYKLGASQRVAG
Position: 177-189
Source molecule (GenBank): 1796318601
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_S(269-281)
Chemical type: Peptide from protein
Sequence: YLQPRTFLLKYNE
Position: 269-281
Source molecule (GenBank): 1796318598
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_S(449-461)
Chemical type: Peptide from protein
Sequence: YNYLYRLFRKSNL
Position: 449-461
Source molecule (GenBank): 1796318598
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS-Cov2_S(265-277)
Chemical type: Peptide from protein
Sequence: YYVGYLQPRTFLL
Position: 265-277
Source molecule (GenBank): 1796318598
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: T G Berger; F Kiesewetter; C Maczek; N Bauer; M Lueftl; G Schuler; M Simon. "Psoriasis confined strictly to vitiligo areas--a Koebner-like phenomenon?" Journal of the European Academy of Dermatology and Venereology : JEADV (2006).

Epitope: melan A
Chemical type: Peptide, no natural source
Sequence: ELAGIGILTV
Assay category: TCell
Result: Positive
Host: F 32
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: melan A
Chemical type: Peptide, no natural source
Sequence: ELAGIGILTV
Assay category: TCell
Result: Positive
Host: F 32
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: gp100
Chemical type: Peptide, no natural source
Sequence: IMDQVPFSV
Assay category: TCell
Result: Negative
Host: F 32
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: gp100
Chemical type: Peptide, no natural source
Sequence: IMDQVPFSV
Assay category: TCell
Result: Negative
Host: F 32
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: tyrosinase
Chemical type: Peptide from protein
Sequence: YMDGTMSQV
Assay category: TCell
Result: Negative
Host: F 32
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: tyrosinase
Chemical type: Peptide from protein
Sequence: YMDGTMSQV
Assay category: TCell
Result: Positive-Low
Host: F 32
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Stephanie van de Wall; Karl Ljungberg; Peng Peng Ip; Annemarie Boerma; Maria L Knudsen; Hans W Nijman; Peter Liljeström; Toos Daemen. "Potent therapeutic efficacy of an alphavirus replicon DNA vaccine expressing human papilloma virus E6 and E7 antigens." Oncoimmunology (2018).

Epitope: E7-derived peptide
Chemical type: Peptide from protein
Sequence: RAHYNIVTF
Position: 49-57
Source molecule (GenBank): P03129
Assay category: TCell
Result: Positive
Host: F 8-10 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: E7-derived peptide
Chemical type: Peptide from protein
Sequence: RAHYNIVTF
Position: 49-57
Source molecule (GenBank): P03129
Assay category: TCell
Result: Positive
Host: F 8-10 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Emily B Wong; Marielle C Gold; Erin W Meermeier; Bongiwe Z Xulu; Sharon Khuzwayo; Zuri A Sullivan; Eisa Mahyari; Zoe Rogers; Hénrik Kløverpris; Prabhat K Sharma; Aneta H Worley; Umesh Lalloo; Prinita Baijnath; Anish Ambaram; Leon Naidoo; Moosa Suleman; Rajhmun Madansein; James E McLaren; Kristin Ladell; Kelly L Miners; David A Price; Samuel M Behar; Morten Nielsen; Victoria O Kasprowicz; Alasdair Leslie; William R Bishai; Thumbi Ndung'u; David M Lewinsohn. "TRAV1-2<sup>+</sup> CD8<sup>+</sup> T-cells including oligoconal expansions of MAIT cells are enriched in the airways in human tuberculosis." Communications biology (2019).

Epitope: 5-OP-RU
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive
Host:  19-28 years
Cell type: T cell CD3+
Tissue: bronchial aveolar lavage (BAL)
Culture conditions: Direct Ex Vivo

Epitope: 5-OP-RU
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive
Cell type: T cell CD3+
Tissue: bronchial aveolar lavage (BAL)
Culture conditions: Cell Line / Clone

Epitope: 5-OP-RU
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive
Cell type: T cell CD3+
Tissue: bronchial aveolar lavage (BAL)
Culture conditions: Cell Line / Clone
Reference: Ingerid Weum Abrahamsen; Bjørn Christer Grønvold; Else Marit Inderberg; Nadia Mensali; Jonas Mattsson; Tobias Gedde-Dahl. "Posttransplantation Lymphoproliferative Disease Treated by Retransplantation." Case reports in immunology (2020).

Epitope: EBV HLA-A*0201/GLCTLVAML
Chemical type: Peptide from protein
Sequence: GLCTLVAML
Position: 259-267
Source molecule (GenBank): YP_401660.1
Assay category: TCell
Result: Positive
Host: M 29 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: EBV HLA-B*07:02/RPQGGSRPEFVK
Chemical type: Peptide from protein
Sequence: RPQGGSRPEFVK
Position: 116-127
Source molecule (GenBank): YP_401657.1
Assay category: TCell
Result: Negative
Host: M 29 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: A Haque; N Rachinel; M R Quddus; S Haque; L H Kasper; E Usherwood. "Co-infection of malaria and gamma-herpesvirus: exacerbated lung inflammation or cross-protection depends on the stage of viral infection." Clinical and experimental immunology (2004).

Epitope: M2
Chemical type: Peptide from protein
Sequence: GFNKLRSTL
Position: 91-99
Source molecule (GenBank): AAF19270.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: M2
Chemical type: Peptide from protein
Sequence: GFNKLRSTL
Position: 91-99
Source molecule (GenBank): AAF19270.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: ORF65
Chemical type: Peptide from protein
Sequence: LGPDKSGLGF
Position: 131-140
Source molecule (GenBank): AAF19329.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: ORF65
Chemical type: Peptide from protein
Sequence: LGPDKSGLGF
Position: 131-140
Source molecule (GenBank): AAF19329.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo