LiteFold/IEDB huggingface dataset:
Reference: Tao Che; Susruta Majumdar; Saheem A Zaidi; Pauline Ondachi; John D McCorvy; Sheng Wang; Philip D Mosier; Rajendra Uprety; Eyal Vardy; Brian E Krumm; Gye Won Han; Ming-Yue Lee; Els Pardon; Jan Steyaert; Xi-Ping Huang; Ryan T Strachan; Alexandra R Tribo; Gavril W Pasternak; F Ivy Carroll; Raymond C Stevens; Vadim Cherezov; Vsevolod Katritch; Daniel Wacker; Bryan L Roth. "Structure of the Nanobody-Stabilized Active State of the Kappa Opioid Receptor." Cell (2018).

Epitope: Epitope of nanobody Nb39 on kappa opioid receptor
Chemical type: Discontinuous protein residues
Discontinuous residues: T92, R156, A159, V160, P163, V164, A166, L167, D168, R170, T171, P172, M249, R252, L253, V256, E264, K265, N268, I272
Source molecule (GenBank): P41145.2
Assay category: BCell
Result: Positive
Quantitative measurement: 3.1

Epitope: Epitope of nanobody Nb39 on kappa opioid receptor
Chemical type: Discontinuous protein residues
Discontinuous residues: T92, R156, A159, V160, P163, V164, A166, L167, D168, R170, T171, P172, M249, R252, L253, V256, E264, K265, N268, I272
Source molecule (GenBank): P41145.2
Assay category: BCell
Result: Positive
Reference: Deepak Koirala; Sandip A Shelke; Marcel Dupont; Stormy Ruiz; Saurja DasGupta; Lucas J Bailey; Steven A Benner; Joseph A Piccirilli. "Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography." Nucleic acids research (2018).

Epitope: RNA motif GAGACCC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 25.0

Epitope: RNA motif GAGACCC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 42.0

Epitope: RNA motif GAGACCC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 9.0

Epitope: RNA motif GAGACCC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 2.09

Epitope: RNA motif GAGACCC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 12.0

Epitope: RNA motif GAGACCC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 90.0

Epitope: RNA motif GAAACAC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 13.0

Epitope: RNA motif GAAACAC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 9.0

Epitope: RNA motif GAAACAC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 1.64

Epitope: RNA motif GAAACAC
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 90.0
Reference: Leyuan Bao; Clare Hannon; Abimael Cruz-Mignoni; Denis Ptchelkine; Mei-Yi Sun; Ami Miller; Wilawan Bunjobpol; Camilo E Quevedo; Mariliza Derveni; Jennifer Chambers; Alison Simmons; Simon E V Phillips; Terence H Rabbitts. "Intracellular immunization against HIV infection with an intracellular antibody that mimics HIV integrase binding to the cellular LEDGF protein." Scientific reports (2017).

Epitope: Epitope of VH59 on LEDGF
Chemical type: Discontinuous protein residues
Discontinuous residues: L363, K364, I365, L368, T399, K402, I403, R405, F406, V408
Source molecule (GenBank): O75475.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.01225

Epitope: Epitope of VH59 on LEDGF
Chemical type: Discontinuous protein residues
Discontinuous residues: L363, K364, I365, L368, T399, K402, I403, R405, F406, V408
Source molecule (GenBank): O75475.1
Assay category: BCell
Result: Positive

Epitope: Epitope of VH59 on LEDGF
Chemical type: Discontinuous protein residues
Discontinuous residues: L363, K364, I365, L368, T399, K402, I403, R405, F406, V408
Source molecule (GenBank): O75475.1
Assay category: BCell
Result: Positive
Quantitative measurement: 12100.0

Epitope: Epitope of VH59 on LEDGF
Chemical type: Discontinuous protein residues
Discontinuous residues: L363, K364, I365, L368, T399, K402, I403, R405, F406, V408
Source molecule (GenBank): O75475.1
Assay category: BCell
Result: Positive

Epitope: Epitope of VH59 on LEDGF
Chemical type: Discontinuous protein residues
Discontinuous residues: L363, K364, I365, L368, T399, K402, I403, R405, F406, V408
Source molecule (GenBank): O75475.1
Assay category: BCell
Result: Positive
Quantitative measurement: 1.7

Epitope: Epitope of VH59 on LEDGF
Chemical type: Discontinuous protein residues
Discontinuous residues: L363, K364, I365, L368, T399, K402, I403, R405, F406, V408
Source molecule (GenBank): O75475.1
Assay category: BCell
Result: Positive
Quantitative measurement: 1013.0
Reference: Xiangdong Li; Fanli Yang; Xule Hu; Feifei Tan; Jianxun Qi; Ruchao Peng; Min Wang; Yan Chai; Liying Hao; Junhua Deng; Chenyu Bai; Juan Wang; Hao Song; Shuguang Tan; Guangwen Lu; George F Gao; Yi Shi; Kegong Tian. "Two classes of protective antibodies against Pseudorabies virus variant glycoprotein B: Implications for vaccine design." PLoS pathogens (2017).

Epitope: mAb 1H1
Chemical type: Discontinuous protein residues
Discontinuous residues: Q206, D210, R214, R215, K221, E223
Source molecule (GenBank): ALT14233.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: mAb 1H1
Chemical type: Discontinuous protein residues
Discontinuous residues: Q206, D210, R214, R215, K221, E223
Source molecule (GenBank): ALT14233.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: mAb 1H1
Chemical type: Discontinuous protein residues
Discontinuous residues: Q206, D210, R214, R215, K221, E223
Source molecule (GenBank): ALT14233.1
Assay category: BCell
Result: Positive
Quantitative measurement: 3.3
Host: F 6 weeks

Epitope: mAb 1H1
Chemical type: Discontinuous protein residues
Discontinuous residues: Q206, D210, R214, R215, K221, E223
Source molecule (GenBank): ALT14233.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: mAb 1H1
Chemical type: Discontinuous protein residues
Discontinuous residues: Q206, D210, R214, R215, K221, E223
Source molecule (GenBank): ALT14233.1
Assay category: BCell
Result: Positive
Host: F 6 weeks
Reference: Liang Xu; Andrea Carrer; Francesco Zonta; Zhihu Qu; Peixiang Ma; Sheng Li; Federico Ceriani; Damiano Buratto; Giulia Crispino; Veronica Zorzi; Gaia Ziraldo; Francesca Bruno; Chiara Nardin; Chiara Peres; Flavia Mazzarda; Anna M Salvatore; Marcello Raspa; Ferdinando Scavizzi; Youjun Chu; Sichun Xie; Xuemei Yang; Jun Liao; Xiao Liu; Wei Wang; Shanshan Wang; Guang Yang; Richard A Lerner; Fabio Mammano. "Design and Characterization of a Human Monoclonal Antibody that Modulates Mutant Connexin 26 Hemichannels Implicated in Deafness and Skin Disorders." Frontiers in molecular neuroscience (2017).

Epitope: pepEC1.1
Chemical type: Peptide from protein
Sequence: KEVWGDEQADFVCNTL
Position: 41-56
Source molecule (GenBank): AAQ94941.1
Assay category: BCell
Result: Positive

Epitope: pepEC1.1
Chemical type: Peptide from protein
Sequence: KEVWGDEQADFVCNTL
Position: 41-56
Source molecule (GenBank): AAQ94941.1
Assay category: BCell
Result: Positive

Epitope: pepEC1.1
Chemical type: Peptide from protein
Sequence: KEVWGDEQADFVCNTL
Position: 41-56
Source molecule (GenBank): AAQ94941.1
Assay category: BCell
Result: Positive

Epitope: pepEC1.1
Chemical type: Peptide from protein
Sequence: KEVWGDEQADFVCNTL
Position: 41-56
Source molecule (GenBank): AAQ94941.1
Assay category: BCell
Result: Positive

Epitope: pepEC1.1
Chemical type: Peptide from protein
Sequence: KEVWGDEQADFVCNTL
Position: 41-56
Source molecule (GenBank): AAQ94941.1
Assay category: BCell
Result: Positive
Reference: Yi Shi; Ai Kawana-Tachikawa; Feng Gao; Jianxun Qi; Chuansheng Liu; Jia Gao; Hao Cheng; Takamasa Ueno; Aikichi Iwamoto; George F Gao. "Conserved Vδ1 Binding Geometry in a Setting of Locus-Disparate pHLA Recognition by δ/αβ T Cell Receptors (TCRs): Insight into Recognition of HIV Peptides by TCRs." Journal of virology (2017).

Epitope: Nef138-10
Chemical type: Peptide from protein
Sequence: RYPLTFGWCF
Position: 134-143
Source molecule (GenBank): Q9YYU8.1
Assay category: TCell
Result: Positive
Quantitative measurement: 1060.0

Epitope: Nef138-10
Chemical type: Peptide from protein
Sequence: RYPLTFGWCF
Position: 134-143
Source molecule (GenBank): Q9YYU8.1
Assay category: TCell
Result: Positive
Quantitative measurement: 0.265

Epitope: Nef138-10
Chemical type: Peptide from protein
Sequence: RYPLTFGWCF
Position: 134-143
Source molecule (GenBank): Q9YYU8.1
Assay category: TCell
Result: Positive
Quantitative measurement: 2.684

Epitope: Nef138-10
Chemical type: Peptide from protein
Sequence: RYPLTFGWCF
Position: 134-143
Source molecule (GenBank): Q9YYU8.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Nef138-10
Chemical type: Peptide from protein
Sequence: RYPLTFGWCF
Position: 134-143
Source molecule (GenBank): Q9YYU8.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Nef138-10
Chemical type: Peptide from protein
Sequence: RYPLTFGWCF
Position: 134-143
Source molecule (GenBank): Q9YYU8.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.684

Epitope: Pol448-9
Chemical type: Peptide from protein
Sequence: IPLTEEAEL
Position: 392-400
Source molecule (GenBank): ACX47061.1
Assay category: TCell
Result: Positive
Quantitative measurement: 270.0

Epitope: Pol448-9
Chemical type: Peptide from protein
Sequence: IPLTEEAEL
Position: 392-400
Source molecule (GenBank): ACX47061.1
Assay category: TCell
Result: Positive
Quantitative measurement: 0.0032

Epitope: Pol448-9
Chemical type: Peptide from protein
Sequence: IPLTEEAEL
Position: 392-400
Source molecule (GenBank): ACX47061.1
Assay category: TCell
Result: Positive
Quantitative measurement: 2.787

Epitope: Pol448-9
Chemical type: Peptide from protein
Sequence: IPLTEEAEL
Position: 392-400
Source molecule (GenBank): ACX47061.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.787

Epitope: Pol448-9
Chemical type: Peptide from protein
Sequence: IPLTEEAEL
Position: 392-400
Source molecule (GenBank): ACX47061.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 1.697
Reference: Thomas O Cameron; George B Cohen; Sabina A Islam; Lawrence J Stern. "Examination of the highly diverse CD4(+) T-cell repertoire directed against an influenza peptide: a step towards TCR proteomics." Immunogenetics (2002).

Epitope: HA 306-318
Chemical type: Peptide from protein
Sequence: PKYVKQNTLKLAT
Position: 306-318
Source molecule (GenBank): 1101228B
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: HA 306-318
Chemical type: Peptide from protein
Sequence: PKYVKQNTLKLAT
Position: 306-318
Source molecule (GenBank): 1101228B
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Elizabeth K Day; Andrew J Carmichael; Ineke J M ten Berge; Edward C P Waller; J G Patrick Sissons; Mark R Wills. "Rapid CD8+ T cell repertoire focusing and selection of high-affinity clones into memory following primary infection with a persistent human virus: human cytomegalovirus." Journal of immunology (Baltimore, Md. : 1950) (2007).

Epitope: pp65 (417-426)
Chemical type: Peptide from protein
Sequence: TPRVTGGGAM
Position: 417-426
Source molecule (GenBank): ACL51152.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: pp65 (417-426)
Chemical type: Peptide from protein
Sequence: TPRVTGGGAM
Position: 417-426
Source molecule (GenBank): ACL51152.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: pp65 (417-426)
Chemical type: Peptide from protein
Sequence: TPRVTGGGAM
Position: 417-426
Source molecule (GenBank): ACL51152.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: pp65 (495-503)
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 495-503
Source molecule (GenBank): ACL51152.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: pp65 (495-503)
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 495-503
Source molecule (GenBank): ACL51152.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: pp65 (495-503)
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 495-503
Source molecule (GenBank): ACL51152.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Mark Klinger; Katherine Kong; Martin Moorhead; Li Weng; Jianbiao Zheng; Malek Faham. "Combining next-generation sequencing and immune assays: a novel method for identification of antigen-specific T cells." PloS one (2013).

Epitope: pp65 (485-493)
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 495-503
Source molecule (GenBank): YP_081531.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: pp65 (485-493)
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 495-503
Source molecule (GenBank): YP_081531.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: pp65 (485-493)
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 495-503
Source molecule (GenBank): YP_081531.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: pp65 (485-493)
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 495-503
Source molecule (GenBank): YP_081531.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Katrin Wenzel; Sarah Schulze-Rothe; Johannes Müller; Gerd Wallukat; Annekathrin Haberland. "Difference between beta1-adrenoceptor autoantibodies of human and animal origin-Limitations detecting beta1-adrenoceptor autoantibodies using peptide based ELISA technology." PloS one (2018).

Epitope: ADRB1 202-214
Chemical type: Peptide from protein
Sequence: ESDEARRCYNDPK
Position: 202-214
Source molecule (GenBank): NP_000675.1
Assay category: BCell
Result: Negative

Epitope: 240
Chemical type: Peptide from protein
Sequence: PKCCDF
Position: 213-218
Source molecule (GenBank): NP_000675.1
Assay category: BCell
Result: Positive-Low
Reference: Junyeong Jin; Changhoon Park; Sun-Hee Cho; Junho Chung. "The level of decoy epitope in PCV2 vaccine affects the neutralizing activity of sera in the immunized animals." Biochemical and biophysical research communications (2018).

Epitope: CP 169-180
Chemical type: Peptide from protein
Sequence: STIDYFQPNNKR
Position: 169-180
Source molecule (GenBank): ACE78292.1
Assay category: BCell
Result: Positive

Epitope: CP 169-180
Chemical type: Peptide from protein
Sequence: STIDYFQPNNKR
Position: 169-180
Source molecule (GenBank): ACE78292.1
Assay category: BCell
Result: Positive-Low

Epitope: CP 169-180
Chemical type: Peptide from protein
Sequence: STIDYFQPNNKR
Position: 169-180
Source molecule (GenBank): ACE78292.1
Assay category: BCell
Result: Positive

Epitope: CP 169-180
Chemical type: Peptide from protein
Sequence: STIDYFQPNNKR
Position: 169-180
Source molecule (GenBank): ACE78292.1
Assay category: BCell
Result: Positive

Epitope: CP 169-180
Chemical type: Peptide from protein
Sequence: STIDYFQPNNKR
Position: 169-180
Source molecule (GenBank): ACE78292.1
Assay category: BCell
Result: Positive

Epitope: CP 169-180
Chemical type: Peptide from protein
Sequence: STIDYFQPNNKR
Position: 169-180
Source molecule (GenBank): ACE78292.1
Assay category: BCell
Result: Positive-Low

Epitope: CP 169-180
Chemical type: Peptide from protein
Sequence: STIDYFQPNNKR
Position: 169-180
Source molecule (GenBank): ACE78292.1
Assay category: BCell
Result: Positive

Epitope: CP 169-180
Chemical type: Peptide from protein
Sequence: STIDYFQPNNKR
Position: 169-180
Source molecule (GenBank): ACE78292.1
Assay category: BCell
Result: Positive
Reference: Rui Hua; Xiaoyu Jiang; Lingxia Qi; Shanshan Guan; Ziyu Kuai; Yongbo Qiao; Yan Xu; Xin Gong; Yuhua Shi; Wei Kong; Junqi Niu; Hao Zhang; Yaming Shan. "Screening HCV genotype-specific epitope peptides based on conserved sequence analysis and B cell epitope prediction in HCV E2 region." Immunologic research (2018).

Epitope: HCV 1A E2 (434-446)
Chemical type: Peptide from protein
Sequence: DTGWLAGLFYYHK
Position: 434-446
Source molecule (GenBank): ACA50657.1
Assay category: BCell
Result: Positive
Host:  mean: 48 years

Epitope: HCV 1B E2 (434-446)
Chemical type: Peptide from protein
Sequence: HTGFLAALFYAKS
Position: 434-446
Source molecule (GenBank): AFS68499.1
Assay category: BCell
Result: Negative
Host:  mean: 48 years

Epitope: HCV 1B E2 (434-446)
Chemical type: Peptide from protein
Sequence: HTGFLAALFYAKS
Position: 434-446
Source molecule (GenBank): AFS68499.1
Assay category: BCell
Result: Negative
Host:  mean: 48 years

Epitope: HCV 4D E2 (434-446)
Chemical type: Peptide from protein
Sequence: NTGFLASLFYTHK
Position: 434-446
Source molecule (GenBank): YP_001469632.1
Assay category: BCell
Result: Positive
Host:  mean: 48 years

Epitope: HCV E2 consensus
Chemical type: Peptide from protein
Sequence: FNSSGCPER
Position: 447-455
Source molecule (GenBank): AFD18573.1
Assay category: BCell
Result: Positive
Host:  mean: 48 years
Reference: Lijun Zheng; Wenhui Wang; Jinjin Liu; Xuhui Chen; Sanjing Li; Qiaoli Wang; Yuqi Huo; Chuan Qin; Shuo Shen; Mingchen Wang. "Characterization of a Norovirus-specific monoclonal antibody that exhibits wide spectrum binding activities." Journal of medical virology (2018).

Epitope: CC-11
Chemical type: Peptide from protein
Sequence: QNIIDPWIMNNF
Position: 45-56
Source molecule (GenBank): AGX01095.1
Assay category: BCell
Result: Positive

Epitope: CC-11
Chemical type: Peptide from protein
Sequence: QNIIDPWIMNNF
Position: 45-56
Source molecule (GenBank): AGX01095.1
Assay category: BCell
Result: Positive

Epitope: CC-11
Chemical type: Peptide from protein
Sequence: QNIIDPWIMNNF
Position: 45-56
Source molecule (GenBank): AGX01095.1
Assay category: BCell
Result: Positive

Epitope: CC-11
Chemical type: Peptide from protein
Sequence: QNIIDPWIMNNF
Position: 45-56
Source molecule (GenBank): AGX01095.1
Assay category: BCell
Result: Positive

Epitope: CC-11
Chemical type: Peptide from protein
Sequence: QNIIDPWIMNNF
Position: 45-56
Source molecule (GenBank): AGX01095.1
Assay category: BCell
Result: Positive

Epitope: CC-11
Chemical type: Peptide from protein
Sequence: QNIIDPWIMNNF
Position: 45-56
Source molecule (GenBank): AGX01095.1
Assay category: BCell
Result: Positive

Epitope: CC-11
Chemical type: Peptide from protein
Sequence: QNIIDPWIMNNF
Position: 45-56
Source molecule (GenBank): AGX01095.1
Assay category: BCell
Result: Positive

Epitope: CC-11
Chemical type: Peptide from protein
Sequence: QNIIDPWIMNNF
Position: 45-56
Source molecule (GenBank): AGX01095.1
Assay category: BCell
Result: Positive

Epitope: CC-11
Chemical type: Peptide from protein
Sequence: QNIIDPWIMNNF
Position: 45-56
Source molecule (GenBank): AGX01095.1
Assay category: BCell
Result: Positive
Reference: Nicole Upfold; Caroline Ross; Özlem Tastan Bishop; Garry A Luke; Caroline Knox. "The generation and characterisation of neutralising antibodies against the Theiler's murine encephalomyelitis virus (TMEV) GDVII capsid reveals the potential binding site of the host cell co-receptor, heparan sulfate." Virus research (2018).

Epitope: VP1 (222-276)
Chemical type: Peptide from protein
Sequence: DFGRIWIQGNSSASVRIRYKKMKVFCPRPTLFFPWPTPTTTKINADNPVPILELEN
Position: 868-923
Source molecule (GenBank): AAA47929.1
Assay category: BCell
Result: Positive

Epitope: VP1 (222-276)
Chemical type: Peptide from protein
Sequence: DFGRIWIQGNSSASVRIRYKKMKVFCPRPTLFFPWPTPTTTKINADNPVPILELEN
Position: 868-923
Source molecule (GenBank): AAA47929.1
Assay category: BCell
Result: Positive

Epitope: VP1 (222-276)
Chemical type: Peptide from protein
Sequence: DFGRIWIQGNSSASVRIRYKKMKVFCPRPTLFFPWPTPTTTKINADNPVPILELEN
Position: 868-923
Source molecule (GenBank): AAA47929.1
Assay category: BCell
Result: Positive
Reference: José Herrera-Rodriguez; Tjarko Meijerhof; Hubert G Niesters; Grete Stjernholm; Arnt-Ove Hovden; Birger Sørensen; Mats Ökvist; Maja A Sommerfelt; Anke Huckriede. "A novel peptide-based vaccine candidate with protective efficacy against influenza A in a mouse model." Virology (2018).

Epitope: Peptide A
Chemical type: Peptide from protein
Sequence: TPIRNEWGCRCNDSS
Position: 9-23
Source molecule (GenBank): Q3SAL6.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks

Epitope: Peptide A
Chemical type: Peptide from protein
Sequence: TPIRNEWGCRCNDSS
Position: 9-23
Source molecule (GenBank): Q3SAL6.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide C
Chemical type: Peptide from protein
Sequence: AAFEDLRLLSFIR
Position: 336-348
Source molecule (GenBank): ABP49342.1
Assay category: TCell
Result: Negative
Host: F 6-8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: M Fehlings; S Chakarov; Y Simoni; B Sivasankar; F Ginhoux; E W Newell. "Multiplex peptide-MHC tetramer staining using mass cytometry for deep analysis of the influenza-specific T-cell response in mice." Journal of immunological methods (2018).

Epitope: Db-NP-366
Chemical type: Peptide from protein
Sequence: ASNENMETM
Position: 366-374
Source molecule (GenBank): AAA43467.1
Assay category: TCell
Result: Positive
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Db-PA-224
Chemical type: Peptide from protein
Sequence: SSLENFRAYV
Position: 224-233
Source molecule (GenBank): Q9IQ47.1
Assay category: TCell
Result: Positive
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Db-PB1F2-62
Chemical type: Peptide from protein
Sequence: LSLRNPILV
Position: 62-70
Source molecule (GenBank): P0C0U1.1
Assay category: TCell
Result: Positive
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Kb-PB1-703
Chemical type: Peptide from protein
Sequence: SSYRRPVGI
Position: 703-711
Source molecule (GenBank): AAA43637.1
Assay category: TCell
Result: Positive
Host: M 6-8 weeks
Cell type: T cell CD8+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Ab-NP-311
Chemical type: Peptide from protein
Sequence: QVYSLIRPNENPAHK
Position: 311-325
Source molecule (GenBank): AAA43467.1
Assay category: TCell
Result: Positive
Host: M 6-8 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo