LiteFold/IEDB huggingface dataset:
Reference: Kunwoong Park; Byoung-Cheol Lee; Hyun-Ho Lim. "Mutation of external glutamate residue reveals a new intermediate transport state and anion binding site in a CLC Cl<sup>-</sup>/H<sup>+</sup> antiporter." Proceedings of the National Academy of Sciences of the United States of America (2019).

Epitope: Epitope of Fab on CLC-ec1 H+/Cl- antiporter
Chemical type: Region on multi-chain protein
Discontinuous residues: A: K243, L244, D246, P248, L249, N250, P380, Q381, Y382, H383; B: I231, H234, E235
Source molecule (GenBank): P37019.2
Assay category: BCell
Result: Positive
Quantitative measurement: 2.692

Epitope: Epitope of Fab on CLC-ec1 H+/Cl- antiporter
Chemical type: Region on multi-chain protein
Discontinuous residues: A: K243, L244, D246, P248, L249, N250, P380, Q381, Y382, H383; B: I231, H234, E235
Source molecule (GenBank): P37019.2
Assay category: BCell
Result: Positive
Quantitative measurement: 3.203

Epitope: Epitope of Fab on CLC-ec1 H+/Cl- antiporter
Chemical type: Region on multi-chain protein
Discontinuous residues: A: K243, L244, D246, P248, L249, N250, P380, Q381, Y382, H383; B: I231, H234, E235
Source molecule (GenBank): P37019.2
Assay category: BCell
Result: Positive
Quantitative measurement: 3.203

Epitope: Epitope of Fab on CLC-ec1 H+/Cl- antiporter
Chemical type: Region on multi-chain protein
Discontinuous residues: A: K243, L244, D246, P248, L249, N250, P380, Q381, Y382, H383; B: I231, H234, E235
Source molecule (GenBank): P37019.2
Assay category: BCell
Result: Positive
Quantitative measurement: 3.022

Epitope: Epitope of Fab on CLC-ec1 H+/Cl- antiporter
Chemical type: Region on multi-chain protein
Discontinuous residues: A: K243, L244, D246, P248, L249, N250, P380, Q381, Y382, H383; B: I231, H234, E235
Source molecule (GenBank): P37019.2
Assay category: BCell
Result: Positive
Quantitative measurement: 2.95

Epitope: Epitope of Fab on CLC-ec1 H+/Cl- antiporter
Chemical type: Region on multi-chain protein
Discontinuous residues: A: K243, L244, D246, P248, L249, N250, P380, Q381, Y382, H383; B: I231, H234, E235
Source molecule (GenBank): P37019.2
Assay category: BCell
Result: Positive
Quantitative measurement: 3.153

Epitope: Epitope of Fab on CLC-ec1 H+/Cl- antiporter
Chemical type: Region on multi-chain protein
Discontinuous residues: A: K243, L244, D246, P248, L249, N250, P380, Q381, Y382, H383; B: I231, H234, E235
Source molecule (GenBank): P37019.2
Assay category: BCell
Result: Positive
Quantitative measurement: 3.162

Epitope: Epitope of Fab on CLC-ec1 H+/Cl- antiporter
Chemical type: Region on multi-chain protein
Discontinuous residues: A: K243, L244, D246, P248, L249, N250, P380, Q381, Y382, H383; B: I231, H234, E235
Source molecule (GenBank): P37019.2
Assay category: BCell
Result: Positive
Quantitative measurement: 3.055

Epitope: Epitope of Fab on CLC-ec1 H+/Cl- antiporter
Chemical type: Region on multi-chain protein
Discontinuous residues: A: K243, L244, D246, P248, L249, N250, P380, Q381, Y382, H383; B: I231, H234, E235
Source molecule (GenBank): P37019.2
Assay category: BCell
Result: Positive
Quantitative measurement: 3.3
Reference: Cholpon Tilegenova; D Marien Cortes; Nermina Jahovic; Emily Hardy; Parameswaran Hariharan; Lan Guan; Luis G Cuello. "Structure, function, and ion-binding properties of a K<sup>+</sup> channel stabilized in the 2,4-ion-bound configuration." Proceedings of the National Academy of Sciences of the United States of America (2019).

Epitope: Epitope of Fab on K+ channel KcsA G77A mutant in sodium
Chemical type: Discontinuous protein residues
Discontinuous residues: Y45, L49, R52, G53, A54, P55, G56, A57, Q58, I60, T61, Y62, R64
Source molecule (GenBank): P0A334.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.13

Epitope: Epitope of Fab on K+ channel KcsA G77A mutant in sodium
Chemical type: Discontinuous protein residues
Discontinuous residues: Y45, L49, R52, G53, A54, P55, G56, A57, Q58, I60, T61, Y62, R64
Source molecule (GenBank): P0A334.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.05

Epitope: Epitope of Fab on K+ channel KcsA G77A mutant in sodium
Chemical type: Discontinuous protein residues
Discontinuous residues: Y45, L49, R52, G53, A54, P55, G56, A57, Q58, I60, T61, Y62, R64
Source molecule (GenBank): P0A334.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.09
Reference: Jamie B Spangler; Ignacio Moraga; Kevin M Jude; Christina S Savvides; K Christopher Garcia. "A strategy for the selection of monovalent antibodies that span protein dimer interfaces." The Journal of biological chemistry (2019).

Epitope: Epitope of on IL-4Rα/γ complex
Chemical type: Region on multi-chain protein
Discontinuous residues: B: D168, P169, A170, D171, F172, R173, S189, T190, K192; C: K164, E167, G215, Q216
Source molecule (GenBank): P24394.1
Assay category: BCell
Result: Positive
Quantitative measurement: 3.1

Epitope: Epitope of on IL-4Rα/γ complex
Chemical type: Region on multi-chain protein
Discontinuous residues: B: D168, P169, A170, D171, F172, R173, S189, T190, K192; C: K164, E167, G215, Q216
Source molecule (GenBank): P24394.1
Assay category: BCell
Result: Positive
Quantitative measurement: 880.0

Epitope: Epitope of on IL-4Rα/γ complex
Chemical type: Region on multi-chain protein
Discontinuous residues: B: D168, P169, A170, D171, F172, R173, S189, T190, K192; C: K164, E167, G215, Q216
Source molecule (GenBank): P24394.1
Assay category: BCell
Result: Positive-Low
Quantitative measurement: 9400.0
Reference: Ishan Deshpande; Jiahao Liang; Danielle Hedeen; Kelsey J Roberts; Yunxiao Zhang; Betty Ha; Naomi R Latorraca; Bryan Faust; Ron O Dror; Philip A Beachy; Benjamin R Myers; Aashish Manglik. "Smoothened stimulation by membrane sterols drives Hedgehog pathway activity." Nature (2019).

Epitope: Epitope of nanobody NbSmo8 on Smoothened (SMO)
Chemical type: Discontinuous protein residues
Discontinuous residues: F256, R265, P267, A268, W343, S346, F347, L350, G351, T352, T353, Y354, Q355, I433, H437, L440, L441, S442, A445, K448, T452, W539, A544
Source molecule (GenBank): P56726.2
Assay category: BCell
Result: Positive
Quantitative measurement: 2.8

Epitope: Epitope of nanobody NbSmo8 on Smoothened (SMO)
Chemical type: Discontinuous protein residues
Discontinuous residues: F256, R265, P267, A268, W343, S346, F347, L350, G351, T352, T353, Y354, Q355, I433, H437, L440, L441, S442, A445, K448, T452, W539, A544
Source molecule (GenBank): P56726.2
Assay category: BCell
Result: Positive
Quantitative measurement: 117.0

Epitope: Epitope of nanobody NbSmo8 on Smoothened (SMO)
Chemical type: Discontinuous protein residues
Discontinuous residues: F256, R265, P267, A268, W343, S346, F347, L350, G351, T352, T353, Y354, Q355, I433, H437, L440, L441, S442, A445, K448, T452, W539, A544
Source molecule (GenBank): P56726.2
Assay category: BCell
Result: Positive

Epitope: Epitope of nanobody NbSmo8 on Smoothened (SMO)
Chemical type: Discontinuous protein residues
Discontinuous residues: F256, R265, P267, A268, W343, S346, F347, L350, G351, T352, T353, Y354, Q355, I433, H437, L440, L441, S442, A445, K448, T452, W539, A544
Source molecule (GenBank): P56726.2
Assay category: BCell
Result: Positive
Quantitative measurement: 8930.0

Epitope: Epitope of nanobody NbSmo8 on Smoothened (SMO)
Chemical type: Discontinuous protein residues
Discontinuous residues: F256, R265, P267, A268, W343, S346, F347, L350, G351, T352, T353, Y354, Q355, I433, H437, L440, L441, S442, A445, K448, T452, W539, A544
Source molecule (GenBank): P56726.2
Assay category: BCell
Result: Positive
Quantitative measurement: 0.00104

Epitope: Epitope of nanobody NbSmo8 on Smoothened (SMO)
Chemical type: Discontinuous protein residues
Discontinuous residues: F256, R265, P267, A268, W343, S346, F347, L350, G351, T352, T353, Y354, Q355, I433, H437, L440, L441, S442, A445, K448, T452, W539, A544
Source molecule (GenBank): P56726.2
Assay category: BCell
Result: Positive
Reference: Deepak Koirala; Yaming Shao; Yelena Koldobskaya; James R Fuller; Andrew M Watkins; Sandip A Shelke; Evgeny V Pilipenko; Rhiju Das; Phoebe A Rice; Joseph A Piccirilli. "A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites." Nature communications (2019).

Epitope: Epitope of HAVx Fab on hepatitis A virus IRES domain V
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 44.0

Epitope: Epitope of HAVx Fab on hepatitis A virus IRES domain V
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 2.838

Epitope: Epitope of HAVx Fab on hepatitis A virus IRES domain V
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Reference: Lianne P W M Lelieveldt; Hendy Kristyanto; Ger J M Pruijn; Hans Ulrich Scherer; René E M Toes; Kimberly M Bonger. "Sequential Prodrug Strategy To Target and Eliminate ACPA-Selective Autoreactive B Cells." Molecular pharmaceutics (2018).

Epitope: cyclic citrullinated peptide (CCP)
Chemical type: Peptide, no natural source
Sequence: HQCHQESTRGRSRGRCGRSGS
Assay category: BCell
Result: Positive

Epitope: cyclic citrullinated peptide (CCP)
Chemical type: Peptide, no natural source
Sequence: HQCHQESTRGRSRGRCGRSGS
Assay category: BCell
Result: Positive

Epitope: cyclic citrullinated peptide (CCP)
Chemical type: Peptide, no natural source
Sequence: HQCHQESTRGRSRGRCGRSGS
Assay category: BCell
Result: Positive

Epitope: cyclic Arg peptide (CArgP)
Chemical type: Peptide, no natural source
Sequence: HQCHQESTRGRSRGRCGRSGS
Assay category: BCell
Result: Negative
Reference: Louis Gioia; Marie Holt; Anne Costanzo; Siddhartha Sharma; Brian Abe; Lisa Kain; Maki Nakayama; Xiaoxiao Wan; Andrew Su; Clayton Mathews; Yi-Guang Chen; Emil Unanue; Luc Teyton. "Position β57 of I-A<sup>g7</sup> controls early anti-insulin responses in NOD mice, linking an MHC susceptibility allele to type 1 diabetes onset." Science immunology (2019).

Epitope: Ins 13-21
Chemical type: Peptide from protein
Sequence: EALYLVCGE
Position: 37-45
Source molecule (GenBank): NP_032413.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: pancreas
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: Ins 13-21
Chemical type: Peptide from protein
Sequence: EALYLVCGE
Position: 37-45
Source molecule (GenBank): NP_032413.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: pancreas
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: Ins 13-21
Chemical type: Peptide from protein
Sequence: EALYLVCGE
Position: 37-45
Source molecule (GenBank): NP_032413.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: pancreas
Culture conditions: Cell Line / Clone (Hybridoma)
Reference: Mia Madel Alfajaro; Ji-Yun Kim; Laure Barbé; Eun-Hyo Cho; Jun-Gyu Park; Mahmoud Soliman; Yeong-Bin Baek; Mun-Il Kang; Soo Hyun Kim; Geun-Joong Kim; Sang-Ik Park; Jacques Le Pendu; Kyoung-Oh Cho. "Dual Recognition of Sialic Acid and αGal Epitopes by the VP8* Domains of the Bovine Rotavirus G6P[5] WC3 and of Its Mono-reassortant G4P[5] RotaTeq Vaccine Strains." Journal of virology (2019).

Epitope: alpha-Gal
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive

Epitope: alpha-Gal
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive

Epitope: alpha-Gal
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive

Epitope: alpha-Gal
Chemical type: Carbohydrate
Assay category: BCell
Result: Positive
Reference: Hongqiang Lou; Xusheng Li; Fangming Guo; Mingxing Ding; Ye Hu; Haohao Chen; Jie Yan. "Evaluations of Alkyl hydroperoxide reductase B cell antigen epitope as a potential epitope vaccine against ." Saudi journal of biological sciences (2019).

Epitope: AhpC34-57
Chemical type: Peptide from protein
Sequence: KGAVVFFYPKDFTFVCPSEIIAFD
Position: 34-57
Source molecule (GenBank): AAD02329.1
Assay category: BCell
Result: Positive
Host: M

Epitope: AhpC94-108
Chemical type: Peptide from protein
Sequence: IGQVKFPLVADLTKQ
Position: 94-108
Source molecule (GenBank): AAD02329.1
Assay category: BCell
Result: Positive
Host: M

Epitope: AhpC112-132
Chemical type: Peptide from protein
Sequence: NFDVLYAEAVALRGSFLLDAD
Position: 112-132
Source molecule (GenBank): AAD02329.1
Assay category: BCell
Result: Positive
Host: M

Epitope: AhpC134-143
Chemical type: Peptide from protein
Sequence: TVRHAVVNDL
Position: 134-143
Source molecule (GenBank): AAD02329.1
Assay category: BCell
Result: Positive
Host: M

Epitope: AhpC4-16
Chemical type: Peptide from protein
Sequence: TKKALDFTAPAVL
Position: 4-16
Source molecule (GenBank): AAD02329.1
Assay category: BCell
Result: Positive-High
Host: M

Epitope: AhpC4-16
Chemical type: Peptide from protein
Sequence: TKKALDFTAPAVL
Position: 4-16
Source molecule (GenBank): AAD02329.1
Assay category: BCell
Result: Positive

Epitope: AhpC4-16
Chemical type: Peptide from protein
Sequence: TKKALDFTAPAVL
Position: 4-16
Source molecule (GenBank): AAD02329.1
Assay category: BCell
Result: Positive

Epitope: AhpC4-16
Chemical type: Peptide from protein
Sequence: TKKALDFTAPAVL
Position: 4-16
Source molecule (GenBank): AAD02329.1
Assay category: TCell
Result: Positive
Cell type: lymphocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: AhpC4-16
Chemical type: Peptide from protein
Sequence: TKKALDFTAPAVL
Position: 4-16
Source molecule (GenBank): AAD02329.1
Assay category: TCell
Result: Negative
Cell type: lymphocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: AhpC68-73
Chemical type: Peptide from protein
Sequence: IEVIGI
Position: 68-73
Source molecule (GenBank): AAD02329.1
Assay category: BCell
Result: Positive
Host: M
Reference: Zelalem A Mekonnen; Branka Grubor-Bauk; Kieran English; Preston Leung; Makutiro G Masavuli; Ashish C Shrestha; Patrick Bertolino; David G Bowen; Andrew R Lloyd; Eric J Gowans; Danushka K Wijesundara. "Single-Dose Vaccination with a Hepatotropic Adeno-associated Virus Efficiently Localizes T Cell Immunity in the Liver with the Potential To Confer Rapid Protection against Hepatitis C Virus." Journal of virology (2019).

Epitope: Peptide 69 (NS5B 442–459)
Chemical type: Peptide from protein
Sequence: PLDFEMYGATYSVTPLDL
Position: 442-459
Source molecule (GenBank): YP_001491557.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks

Epitope: Peptide 70 (NS5B 449–466)
Chemical type: Peptide from protein
Sequence: GATYSVTPLDLPAIIERL
Position: 449-466
Source molecule (GenBank): YP_001491557.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks

Epitope: KdNS5B 451-459
Chemical type: Peptide from protein
Sequence: TYSVTPLDL
Position: 451-459
Source molecule (GenBank): YP_001491557.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks

Epitope: KdNS5B 451-459
Chemical type: Peptide from protein
Sequence: TYSVTPLDL
Position: 451-459
Source molecule (GenBank): YP_001491557.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: liver
Culture conditions: Direct Ex Vivo
Reference: Henry R Maun; Janet K Jackman; David F Choy; Kelly M Loyet; Tracy L Staton; Guiquan Jia; Amy Dressen; Jason A Hackney; Meire Bremer; Benjamin T Walters; Rajesh Vij; Xiaocheng Chen; Neil N Trivedi; Ashley Morando; Michael T Lipari; Yvonne Franke; Xiumin Wu; Juan Zhang; John Liu; Ping Wu; Diana Chang; Luz D Orozco; Erin Christensen; Manda Wong; Racquel Corpuz; Julie Q Hang; Jeff Lutman; Siddharth Sukumaran; Yan Wu; Savita Ubhayakar; Xiaorong Liang; Lawrence B Schwartz; Magda Babina; Prescott G Woodruff; John V Fahy; Rahul Ahuja; George H Caughey; Aija Kusi; Mark S Dennis; Charles Eigenbrot; Daniel Kirchhofer; Cary D Austin; Lawren C Wu; James T Koerber; Wyne P Lee; Brian L Yaspan; Kathila R Alatsis; Joseph R Arron; Robert A Lazarus; Tangsheng Yi. "An Allosteric Anti-tryptase Antibody for the Treatment of Mast Cell-Mediated Severe Asthma." Cell (2019).

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years

Epitope: HCV E2 483-499
Chemical type: Peptide from protein
Sequence: RPYCWHYAPQPCGIVPA
Position: 483-499
Source molecule (GenBank): CAA03854.1
Assay category: BCell
Result: Positive
Host: F 49-63 years
Reference: Wei Liu; Junjun Shao; Danian Chen; Yanyan Chang; Huiyun Chang; Yongguang Zhang. "Identification of three linear B cell epitopes against non-structural protein 3ABC of FMDV using monoclonal antibodies." Applied microbiology and biotechnology (2019).

Epitope: FMDV-NSP-3A-3B1
Chemical type: Peptide from protein
Sequence: EGPYAGPLE
Position: 1574-1582
Source molecule (GenBank): CAA07472.1
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3A-3B1
Chemical type: Peptide from protein
Sequence: EGPYAGPLE
Position: 1574-1582
Source molecule (GenBank): CAA07472.1
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3A-3B1
Chemical type: Peptide from protein
Sequence: EGPYAGPLE
Position: 1574-1582
Source molecule (GenBank): CAA07472.1
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3A-3B1
Chemical type: Peptide from protein
Sequence: EGPYAGPLE
Position: 1574-1582
Source molecule (GenBank): CAA07472.1
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3A-3B1
Chemical type: Peptide from protein
Sequence: EGPYAGPLE
Position: 1574-1582
Source molecule (GenBank): CAA07472.1
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3A
Chemical type: Peptide from protein
Sequence: EYIEKA
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3A
Chemical type: Peptide from protein
Sequence: EYIEKA
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3A
Chemical type: Peptide from protein
Sequence: EYIEKA
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3C
Chemical type: Peptide from protein
Sequence: EPHH
Position: 1853-1856
Source molecule (GenBank): CAM73961.1
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3C
Chemical type: Peptide from protein
Sequence: EPHH
Position: 1853-1856
Source molecule (GenBank): CAM73961.1
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3C
Chemical type: Peptide from protein
Sequence: EPHH
Position: 1853-1856
Source molecule (GenBank): CAM73961.1
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3C
Chemical type: Peptide from protein
Sequence: EPHH
Position: 1853-1856
Source molecule (GenBank): CAM73961.1
Assay category: BCell
Result: Positive

Epitope: FMDV-NSP-3C
Chemical type: Peptide from protein
Sequence: EPHH
Position: 1853-1856
Source molecule (GenBank): CAM73961.1
Assay category: BCell
Result: Positive
Reference: Alphonsus H C Ng; Songming Peng; Alexander M Xu; Won Jun Noh; Katherine Guo; Michael T Bethune; William Chour; Jongchan Choi; Sung Yang; David Baltimore; James R Heath. "MATE-Seq: microfluidic antigen-TCR engagement sequencing." Lab on a chip (2019).

Epitope: CMV
Chemical type: Peptide from protein
Sequence: NLVPMVATV
Position: 495-503
Source molecule (GenBank): ADV04400.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: EBV
Chemical type: Peptide from protein
Sequence: GLCTLVAML
Position: 259-267
Source molecule (GenBank): CAD53409.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Nita Patel; Mike J Massare; Jing-Hui Tian; Mimi Guebre-Xabier; Hanxin Lu; Haixia Zhou; Ernest Maynard; Daniel Scott; Larry Ellingsworth; Gregory Glenn; Gale Smith. "Respiratory syncytial virus prefusogenic fusion (F) protein nanoparticle vaccine: Structure, antigenic profile, immunogenicity, and protection." Vaccine (2019).

Epitope: palivizumab epitope
Chemical type: Peptide from protein
Sequence: NSELLSLINDMPITNDQKKLMSNN
Position: 254-277
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive

Epitope: palivizumab epitope
Chemical type: Peptide from protein
Sequence: NSELLSLINDMPITNDQKKLMSNN
Position: 254-277
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive
Host:  8 years

Epitope: palivizumab epitope
Chemical type: Peptide from protein
Sequence: NSELLSLINDMPITNDQKKLMSNN
Position: 254-277
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive
Host: F

Epitope: palivizumab epitope
Chemical type: Peptide from protein
Sequence: NSELLSLINDMPITNDQKKLMSNN
Position: 254-277
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive
Host: F

Epitope: palivizumab epitope
Chemical type: Peptide from protein
Sequence: NSELLSLINDMPITNDQKKLMSNN
Position: 254-277
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive
Host:  8 years

Epitope: palivizumab epitope
Chemical type: Peptide from protein
Sequence: NSELLSLINDMPITNDQKKLMSNN
Position: 254-277
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive

Epitope: palivizumab epitope
Chemical type: Peptide from protein
Sequence: NSELLSLINDMPITNDQKKLMSNN
Position: 254-277
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive
Host: F
Reference: Kata Horváti; Bernadett Pályi; Judit Henczkó; Gyula Balka; Eleonóra Szabó; Viktor Farkas; Beáta Biri-Kovács; Bálint Szeder; Kinga Fodor. "A Convenient Synthetic Method to Improve Immunogenicity of  Related T-Cell Epitope Peptides." Vaccines (2019).

Epitope: pal-A(P)I
Chemical type: Peptide, no natural source
Sequence: KLVANNTRLTKPKGGLIDIAPHQISSVFFGINTIPIA
Assay category: TCell
Result: Negative
Host: F 6-10 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: pal-A(P)I
Chemical type: Peptide, no natural source
Sequence: KLVANNTRLTKPKGGLIDIAPHQISSVFFGINTIPIA
Assay category: TCell
Result: Positive
Host: F 6-10 weeks

Epitope: pal-A(P)I
Chemical type: Peptide, no natural source
Sequence: KLVANNTRLTKPKGGLIDIAPHQISSVFFGINTIPIA
Assay category: TCell
Result: Negative
Host: F 6-10 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo