Reference: Whitney E Purtha; Nancy Myers; Vesselin Mitaksov; Elizabeth Sitati; Janet Connolly; Daved H Fremont; Ted H Hansen; Michael S Diamond. "Antigen-specific cytotoxic T lymphocytes protect against lethal West Nile virus encephalitis." European journal of immunology (2007).

Epitope: Peptide 1 (WNV-prM)
Chemical type: Peptide from protein
Sequence: RNPGYALV
Position: 253-260
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 2 (WNV-E)
Chemical type: Peptide from protein
Sequence: GVLLFLSV
Position: 776-783
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 4 (WNV-E)
Chemical type: Peptide from protein
Sequence: TVNPFVSV
Position: 643-650
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 5 (WNV-E)
Chemical type: Peptide from protein
Sequence: KLGEYGEV
Position: 465-472
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 6 (WNV-NS1)
Chemical type: Peptide from protein
Sequence: STRMFLKV
Position: 955-962
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 7 (WNV-NS2a)
Chemical type: Peptide from protein
Sequence: GGITYTDV
Position: 1186-1193
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 8 (WNV-NS2a)
Chemical type: Peptide from protein
Sequence: STGLFNPM
Position: 1352-1359
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 9 (WNV-NS2a)
Chemical type: Peptide from protein
Sequence: MVASFLKA
Position: 1233-1240
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 10 (WNV-NS2b)
Chemical type: Peptide from protein
Sequence: VGLMFAIV
Position: 1381-1388
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 11 (WNV-NS3)
Chemical type: Peptide from protein
Sequence: TTGVYRIM
Position: 1520-1527
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 12 (WNV-NS3)
Chemical type: Peptide from protein
Sequence: VEGVFHTL
Position: 1543-1550
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 13 (WNV-NS4a)
Chemical type: Peptide from protein
Sequence: MGVFFLLM
Position: 2189-2196
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 14 (WNV-NS4b)
Chemical type: Peptide from protein
Sequence: ASALFTLA
Position: 2346-2353
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 15 (WNV-NS5)
Chemical type: Peptide from protein
Sequence: ALNTFTNL
Position: 3136-3143
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 16 (WNV-NS5)
Chemical type: Peptide from protein
Sequence: TSLHFLNA
Position: 3206-3213
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 17 (WNV-Capsid)
Chemical type: Peptide from protein
Sequence: HLLSFKKEL
Position: 80-88
Source molecule (GenBank): P06935.2
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide 17 (WNV-Capsid)
Chemical type: Peptide from protein
Sequence: HLLSFKKEL
Position: 80-88
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 18 (WNV-prM)
Chemical type: Peptide from protein
Sequence: TLSNFQGKV
Position: 125-133
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 19 (WNV-E)
Chemical type: Peptide from protein
Sequence: SNRDFLEGV
Position: 297-305
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 20 (WNV-NS1)
Chemical type: Peptide from protein
Sequence: KSILFAPEL
Position: 911-919
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 22 (WNV-NS2a)
Chemical type: Peptide from protein
Sequence: ASTGLFNPM
Position: 1351-1359
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 23 (WNV-NS3)
Chemical type: Peptide from protein
Sequence: MVEGVFHTL
Position: 1542-1550
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 24 (WNV-NS4b)
Chemical type: Peptide from protein
Sequence: ISSLFGQRI
Position: 2286-2294
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 25 (WNV-NS5)
Chemical type: Peptide from protein
Sequence: KGPQYEEDV
Position: 2778-2786
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 26 (WNV-prM)
Chemical type: Peptide from protein
Sequence: AAGKNLCIV
Position: 151-159
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 27 (WNV-E)
Chemical type: Peptide from protein
Sequence: LGMSNRDFL
Position: 294-302
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 28 (WNV-E)
Chemical type: Peptide from protein
Sequence: TVWRNRETL
Position: 521-529
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 29 (WNV-E)
Chemical type: Peptide from protein
Sequence: RGWGNGCGL
Position: 389-397
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 30 (WNV-NS2a)
Chemical type: Peptide from protein
Sequence: TGLFNPMIL
Position: 1353-1361
Source molecule (GenBank): Q0HA74.1
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 31 (WNV-NS4a)
Chemical type: Peptide from protein
Sequence: SQTDNQLAV
Position: 2247-2255
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 32 (WNV-NS5)
Chemical type: Peptide from protein
Sequence: SYGWNIVTM
Position: 2643-2651
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 33 10-mer (WNV-NS4b)
Chemical type: Peptide from protein
Sequence: SSVWNATTAI
Position: 215-224
Source molecule (GenBank): YP_001527886.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide 33 10-mer (WNV-NS4b)
Chemical type: Peptide from protein
Sequence: SSVWNATTAI
Position: 215-224
Source molecule (GenBank): YP_001527886.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: Peptide 33 10-mer (WNV-NS4b)
Chemical type: Peptide from protein
Sequence: SSVWNATTAI
Position: 215-224
Source molecule (GenBank): YP_001527886.1
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 34 (WNV-NS5)
Chemical type: Peptide from protein
Sequence: ADLENEAKVL
Position: 3072-3081
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Negative

Epitope: Peptide 35 (WNV-NS5)
Chemical type: Peptide from protein
Sequence: SSLVNGVVRL
Position: 2845-2854
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive

Epitope: Peptide 33 9-mer
Chemical type: Peptide from protein
Sequence: SSVWNATTA
Position: 2485-2493
Source molecule (GenBank): P06935.2
Assay category: MhcBinding
Result: Positive