Reference: Stacy A Malaker; Sarah A Penny; Lora G Steadman; Paisley T Myers; Justin C Loke; Manoj Raghavan; Dina L Bai; Jeffrey Shabanowitz; Donald F Hunt; Mark Cobbold. "Identification of Glycopeptides as Posttranslationally Modified Neoantigens in Leukemia." Cancer immunology research (2017).

Epitope: APP(sts)AAAL
Chemical type: Peptide from protein
Sequence: APPSTSAAAL
Position: 405-414
Source molecule (GenBank): Q86TM6.2
Assay category: MhcLigandElution
Result: Positive

Epitope: APP(sts)AAAL
Chemical type: Peptide from protein
Sequence: APPSTSAAAL
Position: 405-414
Source molecule (GenBank): Q86TM6.2
Assay category: MhcLigandElution
Result: Positive

Epitope: APRGnVTSL
Chemical type: Peptide from protein
Sequence: APRGNVTSL
Position: 60-68
Source molecule (GenBank): Q9NR96.2
Assay category: MhcLigandElution
Result: Positive

Epitope: APRtNGVAM
Chemical type: Peptide from protein
Sequence: APRTNGVAM
Position: 187-195
Source molecule (GenBank): Q92567.2
Assay category: MhcLigandElution
Result: Positive

Epitope: APRtNGVAM
Chemical type: Peptide from protein
Sequence: APRTNGVAM
Position: 187-195
Source molecule (GenBank): Q92567.2
Assay category: MhcLigandElution
Result: Positive

Epitope: APTsAAAL
Chemical type: Peptide from protein
Sequence: APTSAAAL
Position: 1116-1123
Source molecule (GenBank): Q86Z02.1
Assay category: MhcLigandElution
Result: Positive

Epitope: APVsASASV
Chemical type: Peptide from protein
Sequence: APVSASASV
Position: 1807-1815
Source molecule (GenBank): Q9Y520.4
Assay category: MhcLigandElution
Result: Positive

Epitope: APVsSKSSL
Chemical type: Peptide from protein
Sequence: APVSSKSSL
Position: 850-858
Source molecule (GenBank): Q86Z02.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: APVsSKSSL
Chemical type: Peptide from protein
Sequence: APVSSKSSL
Position: 850-858
Source molecule (GenBank): Q86Z02.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: APVsSKSSL
Chemical type: Peptide from protein
Sequence: APVSSKSSL
Position: 850-858
Source molecule (GenBank): Q86Z02.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: APVsSKSSL
Chemical type: Peptide from protein
Sequence: APVSSKSSL
Position: 850-858
Source molecule (GenBank): Q86Z02.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: APVsSKSSL
Chemical type: Peptide from protein
Sequence: APVSSKSSL
Position: 850-858
Source molecule (GenBank): Q86Z02.1
Assay category: MhcLigandElution
Result: Positive

Epitope: APVsSKSSL
Chemical type: Peptide from protein
Sequence: APVSSKSSL
Position: 850-858
Source molecule (GenBank): Q86Z02.1
Assay category: MhcLigandElution
Result: Positive

Epitope: EP(sst)VVSL
Chemical type: Peptide from protein
Sequence: EPSSTVVSL
Position: 1077-1085
Source molecule (GenBank): O75129.2
Assay category: MhcLigandElution
Result: Positive

Epitope: HPMsTASQV
Chemical type: Peptide from protein
Sequence: HPMSTASQV
Position: 406-414
Source molecule (GenBank): Q13492.2
Assay category: MhcLigandElution
Result: Positive

Epitope: HP(sss)AAVL
Chemical type: Peptide from protein
Sequence: HPSSSAAVL
Assay category: MhcLigandElution
Result: Positive

Epitope: HP(sss)AAVL
Chemical type: Peptide from protein
Sequence: HPSSSAAVL
Assay category: MhcLigandElution
Result: Positive

Epitope: HP(sst)ASTAL
Chemical type: Peptide from protein
Sequence: HPSSTASTAL
Position: 3041-3050
Source molecule (GenBank): Q96T58.1
Assay category: MhcLigandElution
Result: Positive

Epitope: IPIsLHTSL
Chemical type: Peptide from protein
Sequence: IPISLHTSL
Position: 1959-1967
Source molecule (GenBank): Q5JSZ5.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IPIsLHTSL
Chemical type: Peptide from protein
Sequence: IPISLHTSL
Position: 1959-1967
Source molecule (GenBank): Q5JSZ5.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IPIsLHTSL
Chemical type: Peptide from protein
Sequence: IPISLHTSL
Position: 1959-1967
Source molecule (GenBank): Q5JSZ5.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IPIsLHTSL
Chemical type: Peptide from protein
Sequence: IPISLHTSL
Position: 1959-1967
Source molecule (GenBank): Q5JSZ5.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IPIsLHTSL
Chemical type: Peptide from protein
Sequence: IPISLHTSL
Position: 1959-1967
Source molecule (GenBank): Q5JSZ5.2
Assay category: MhcLigandElution
Result: Positive

Epitope: IPTsSVLSL
Chemical type: Peptide from protein
Sequence: IPTSSVLSL
Position: 888-896
Source molecule (GenBank): O15027.4
Assay category: MhcLigandElution
Result: Positive

Epitope: IPVsKPLSL
Chemical type: Peptide from protein
Sequence: IPVSKPLSL
Position: 104-112
Source molecule (GenBank): Q16621.1
Assay category: MhcLigandElution
Result: Positive

Epitope: IPVsKPLSL
Chemical type: Peptide from protein
Sequence: IPVSKPLSL
Position: 104-112
Source molecule (GenBank): Q16621.1
Assay category: MhcLigandElution
Result: Positive

Epitope: IPVsKPLSL
Chemical type: Peptide from protein
Sequence: IPVSKPLSL
Position: 104-112
Source molecule (GenBank): Q16621.1
Assay category: MhcLigandElution
Result: Positive

Epitope: IPVsSHNSL
Chemical type: Peptide from protein
Sequence: IPVSSHNSL
Position: 147-155
Source molecule (GenBank): Q06413.1
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IPVsSHNSL
Chemical type: Peptide from protein
Sequence: IPVSSHNSL
Position: 147-155
Source molecule (GenBank): Q06413.1
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IPVsSHNSL
Chemical type: Peptide from protein
Sequence: IPVSSHNSL
Position: 147-155
Source molecule (GenBank): Q06413.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IPVsSHNSL
Chemical type: Peptide from protein
Sequence: IPVSSHNSL
Position: 147-155
Source molecule (GenBank): Q06413.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IPVsSHNSL
Chemical type: Peptide from protein
Sequence: IPVSSHNSL
Position: 147-155
Source molecule (GenBank): Q06413.1
Assay category: MhcLigandElution
Result: Positive

Epitope: IPVsSHNSL
Chemical type: Peptide from protein
Sequence: IPVSSHNSL
Position: 147-155
Source molecule (GenBank): Q06413.1
Assay category: MhcLigandElution
Result: Positive

Epitope: IPVsSHNSL
Chemical type: Peptide from protein
Sequence: IPVSSHNSL
Position: 147-155
Source molecule (GenBank): Q06413.1
Assay category: MhcLigandElution
Result: Positive

Epitope: IPVsSHNSL
Chemical type: Peptide from protein
Sequence: IPVSSHNSL
Position: 147-155
Source molecule (GenBank): Q06413.1
Assay category: MhcLigandElution
Result: Positive

Epitope: KPP(ts)QSSVL
Chemical type: Peptide from protein
Sequence: KPPTSQSSVL
Position: 411-420
Source molecule (GenBank): Q5T6F2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: KPPVsFFSL
Chemical type: Peptide from protein
Sequence: KPPVSFFSL
Position: 95-103
Source molecule (GenBank): Q6PKC3.2
Assay category: MhcLigandElution
Result: Positive

Epitope: KPTLLYnVSL
Chemical type: Peptide from protein
Sequence: KPTLLYNVSL
Assay category: MhcLigandElution
Result: Positive

Epitope: LPRN(st)MM
Chemical type: Peptide from protein
Sequence: LPRNSTMM
Position: 335-342
Source molecule (GenBank): Q9NPI6.3
Assay category: MhcLigandElution
Result: Positive

Epitope: LPTsLPSSL
Chemical type: Peptide from protein
Sequence: LPTSLPSSL
Position: 2464-2472
Source molecule (GenBank): P46531.4
Assay category: MhcLigandElution
Result: Positive

Epitope: MPVRPTtNTF
Chemical type: Peptide from protein
Sequence: MPVRPTTNTF
Position: 218-227
Source molecule (GenBank): Q7Z3K3.2
Assay category: MhcLigandElution
Result: Positive

Epitope: NPVsLPSL
Chemical type: Peptide from protein
Sequence: NPVSLPSL
Position: 831-838
Source molecule (GenBank): Q6VMQ6.3
Assay category: MhcLigandElution
Result: Positive

Epitope: PPS(ts)AAAL
Chemical type: Peptide from protein
Sequence: PPSTSAAAL
Position: 406-414
Source molecule (GenBank): Q86TM6.2
Assay category: MhcLigandElution
Result: Positive

Epitope: RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: MhcLigandElution
Result: Positive

Epitope: RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: MhcLigandElution
Result: Positive

Epitope: RPPQsSSVSL
Chemical type: Peptide from protein
Sequence: RPPQSSSVSL
Position: 1115-1124
Source molecule (GenBank): O15027.4
Assay category: MhcLigandElution
Result: Positive

Epitope: RPP(sss)QQL
Chemical type: Peptide from protein
Sequence: RPPSSSQQL
Position: 1758-1766
Source molecule (GenBank): Q8WYB5.3
Assay category: MhcLigandElution
Result: Positive

Epitope: RPPVtKASSF
Chemical type: Peptide from protein
Sequence: RPPVTKASSF
Position: 341-350
Source molecule (GenBank): Q9Y2K5.3
Assay category: MhcLigandElution
Result: Positive

Epitope: RPPVtKASSF
Chemical type: Peptide from protein
Sequence: RPPVTKASSF
Position: 341-350
Source molecule (GenBank): Q9Y2K5.3
Assay category: MhcLigandElution
Result: Positive

Epitope: RPVtASITTM
Chemical type: Peptide from protein
Sequence: RPVTASITTM
Position: 927-936
Source molecule (GenBank): Q9ULH7.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RPVtASITTM
Chemical type: Peptide from protein
Sequence: RPVTASITTM
Position: 927-936
Source molecule (GenBank): Q9ULH7.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RPVtASITTM
Chemical type: Peptide from protein
Sequence: RPVTASITTM
Position: 927-936
Source molecule (GenBank): Q9ULH7.3
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RPVtASITTM
Chemical type: Peptide from protein
Sequence: RPVTASITTM
Position: 927-936
Source molecule (GenBank): Q9ULH7.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RPVtASITTM
Chemical type: Peptide from protein
Sequence: RPVTASITTM
Position: 927-936
Source molecule (GenBank): Q9ULH7.3
Assay category: MhcLigandElution
Result: Positive

Epitope: RPVtASITTM
Chemical type: Peptide from protein
Sequence: RPVTASITTM
Position: 927-936
Source molecule (GenBank): Q9ULH7.3
Assay category: MhcLigandElution
Result: Positive

Epitope: RPVtASITTM
Chemical type: Peptide from protein
Sequence: RPVTASITTM
Position: 927-936
Source molecule (GenBank): Q9ULH7.3
Assay category: MhcLigandElution
Result: Positive

Epitope: TPASsRAQTL
Chemical type: Peptide from protein
Sequence: TPASSRAQTL
Position: 2320-2329
Source molecule (GenBank): Q01082.2
Assay category: MhcLigandElution
Result: Positive

Epitope: TPAsSSSAL
Chemical type: Peptide from protein
Sequence: TPASSSSAL
Position: 875-883
Source molecule (GenBank): Q9NPG3.2
Assay category: MhcLigandElution
Result: Positive

Epitope: TPAsSSSAL
Chemical type: Peptide from protein
Sequence: TPASSSSAL
Position: 875-883
Source molecule (GenBank): Q9NPG3.2
Assay category: MhcLigandElution
Result: Positive

Epitope: VPAsSTSTL
Chemical type: Peptide from protein
Sequence: VPASSTSTL
Position: 576-584
Source molecule (GenBank): Q9NYV4.2
Assay category: MhcLigandElution
Result: Positive

Epitope: VPAsSTSTL
Chemical type: Peptide from protein
Sequence: VPASSTSTL
Position: 576-584
Source molecule (GenBank): Q9NYV4.2
Assay category: MhcLigandElution
Result: Positive

Epitope: VPVsGTQGL
Chemical type: Peptide from protein
Sequence: VPVSGTQGL
Position: 93-101
Source molecule (GenBank): P23511.2
Assay category: MhcLigandElution
Result: Positive

Epitope: VPVsNQSSL
Chemical type: Peptide from protein
Sequence: VPVSNQSSL
Position: 146-154
Source molecule (GenBank): Q14814.1
Assay category: MhcLigandElution
Result: Positive

Epitope: VPVsSASEL
Chemical type: Peptide from protein
Sequence: VPVSSASEL
Position: 595-603
Source molecule (GenBank): NP_001350420.1
Assay category: MhcLigandElution
Result: Positive

Epitope: VPVsVGPSL
Chemical type: Peptide from protein
Sequence: VPVSVGPSL
Position: 1156-1164
Source molecule (GenBank): Q86Z02.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Me-RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Me-RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Me-RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Me-RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Me-RPPItQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: pp65
Chemical type: Peptide from protein
Sequence: TPRVTGGGAM
Position: 417-426
Source molecule (GenBank): ADV04400.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: pp65
Chemical type: Peptide from protein
Sequence: TPRVTGGGAM
Position: 417-426
Source molecule (GenBank): ADV04400.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: pp65
Chemical type: Peptide from protein
Sequence: TPRVTGGGAM
Position: 417-426
Source molecule (GenBank): ADV04400.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: pp65
Chemical type: Peptide from protein
Sequence: TPRVTGGGAM
Position: 417-426
Source molecule (GenBank): ADV04400.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: EBNA3A
Chemical type: Peptide from protein
Sequence: RPPIFIRRL
Position: 379-387
Source molecule (GenBank): Q8AZJ8
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: EBNA3A
Chemical type: Peptide from protein
Sequence: RPPIFIRRL
Position: 379-387
Source molecule (GenBank): Q8AZJ8
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: EBNA3A
Chemical type: Peptide from protein
Sequence: RPPIFIRRL
Position: 379-387
Source molecule (GenBank): Q8AZJ8
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: EBNA3A
Chemical type: Peptide from protein
Sequence: RPPIFIRRL
Position: 379-387
Source molecule (GenBank): Q8AZJ8
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Flu
Chemical type: Peptide from protein
Sequence: QPEWFRNVL
Position: 145-153
Source molecule (GenBank): Q5QCX1.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Flu
Chemical type: Peptide from protein
Sequence: QPEWFRNVL
Position: 145-153
Source molecule (GenBank): Q5QCX1.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Flu
Chemical type: Peptide from protein
Sequence: QPEWFRNVL
Position: 145-153
Source molecule (GenBank): Q5QCX1.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Flu
Chemical type: Peptide from protein
Sequence: QPEWFRNVL
Position: 145-153
Source molecule (GenBank): Q5QCX1.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Me-RPPITQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Me-RPPITQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Me-RPPITQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Me-RPPITQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Me-RPPITQSSL
Chemical type: Peptide from protein
Sequence: RPPITQSSL
Position: 382-390
Source molecule (GenBank): Q9P2N5.2
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone