LiteFold/IEDB huggingface dataset:
Reference: Changbao Liu; Nicole D Day; Patrick J Branigan; Lester L Gutshall; Robert T Sarisky; Alfred M Del Vecchio. "Relationship between the loss of neutralizing antibody binding and fusion activity of the F protein of human respiratory syncytial virus." Virology journal (2007).

Epitope: HRSV F site II
Chemical type: Discontinuous protein residues
Discontinuous residues: K272, S275
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive

Epitope: HRSV F site IV, V, VI (MAb19)
Chemical type: Discontinuous protein residues
Discontinuous residues: R429
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive

Epitope: HRSV F site IV, V, VI (ch101F)
Chemical type: Discontinuous protein residues
Discontinuous residues: K433
Source molecule (GenBank): P03420.1
Assay category: BCell
Result: Positive
Reference: Karen Pueschel; Annette Tietz; Mary Carsillo; Michael Steward; Stefan Niewiesk. "Measles virus-specific CD4 T-cell activity does not correlate with protection against lung infection or viral clearance." Journal of virology (2007).

Epitope: N 321-345
Chemical type: Peptide from protein
Sequence: QNKFSAGSYPLLWSYAMGVGVELEN
Position: 321-345
Source molecule (GenBank): P04851.1
Assay category: TCell
Result: Positive
Host: F 6-10 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: F 348-372
Chemical type: Peptide from protein
Sequence: LYPMSPLLQECLRGSTKSCARTLVS
Position: 348-372
Source molecule (GenBank): P69353.1
Assay category: TCell
Result: Positive
Host: F 6-10 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: H 553-567
Chemical type: Peptide from protein
Sequence: YPFRLPIKGVPIELQ
Position: 553-567
Source molecule (GenBank): P08362.1
Assay category: TCell
Result: Positive
Host: F 6-10 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: H 553-567
Chemical type: Peptide from protein
Sequence: YPFRLPIKGVPIELQ
Position: 553-567
Source molecule (GenBank): P08362.1
Assay category: TCell
Result: Positive
Host: F 6-10 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: H 553-567
Chemical type: Peptide from protein
Sequence: YPFRLPIKGVPIELQ
Position: 553-567
Source molecule (GenBank): P08362.1
Assay category: TCell
Result: Negative
Host: F 6-10 weeks
Reference: John A Rutigliano; Tracy J Ruckwardt; Julie E Martin; Barney S Graham. "Relative dominance of epitope-specific CD8+ T cell responses in an F1 hybrid mouse model of respiratory syncytial virus infection." Virology (2007).

Epitope: M2 82-90
Chemical type: Peptide from protein
Sequence: SYIGSINNI
Position: 82-90
Source molecule (GenBank): P04545.1
Assay category: TCell
Result: Positive
Quantitative measurement: 50.0
Host: F 6-10 weeks
Cell type: T cell CD8+
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: M2 82-90
Chemical type: Peptide from protein
Sequence: SYIGSINNI
Position: 82-90
Source molecule (GenBank): P04545.1
Assay category: TCell
Result: Positive
Host: F 6-10 weeks
Cell type: T cell CD8+
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: M2 82-90
Chemical type: Peptide from protein
Sequence: SYIGSINNI
Position: 82-90
Source molecule (GenBank): P04545.1
Assay category: TCell
Result: Positive
Host: F 6-10 weeks
Cell type: T cell CD8+
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: M 187-195
Chemical type: Peptide from protein
Sequence: NAITNAKII
Position: 187-195
Source molecule (GenBank): P03419.1
Assay category: TCell
Result: Positive
Host: F 6-10 weeks
Cell type: T cell CD8+
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: M 187-195
Chemical type: Peptide from protein
Sequence: NAITNAKII
Position: 187-195
Source molecule (GenBank): P03419.1
Assay category: TCell
Result: Positive
Quantitative measurement: 35.0
Host: F 6-10 weeks
Cell type: T cell CD8+
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: M 187-195
Chemical type: Peptide from protein
Sequence: NAITNAKII
Position: 187-195
Source molecule (GenBank): P03419.1
Assay category: TCell
Result: Positive
Host: F 6-10 weeks
Cell type: T cell CD8+
Tissue: lung
Culture conditions: Direct Ex Vivo
Reference: Chen-Yi Chiang; Yun-Ru Pan; Li-Fang Chou; Chih-Yeu Fang; Shih-Rong Wang; Chiou-Ying Yang; Hwan-You Chang. "Functional epitopes on porcine endogenous retrovirus envelope protein interacting with neutralizing antibody combining sites." Virology (2007).

Epitope: PERV Env 417-434
Chemical type: Peptide from protein
Sequence: YPEKAVLDEYDYRYNRPK
Position: 444-461
Source molecule (GenBank): CAA72927.1
Assay category: BCell
Result: Positive

Epitope: PERV Env 417-434
Chemical type: Peptide from protein
Sequence: YPEKAVLDEYDYRYNRPK
Position: 444-461
Source molecule (GenBank): CAA72927.1
Assay category: BCell
Result: Positive

Epitope: PERV Env 417-434
Chemical type: Peptide from protein
Sequence: YPEKAVLDEYDYRYNRPK
Position: 444-461
Source molecule (GenBank): CAA72927.1
Assay category: BCell
Result: Positive

Epitope: PERV Env 517-537
Chemical type: Peptide from protein
Sequence: KEGGLSVALKEECCFYVDHSG
Position: 517-537
Assay category: BCell
Result: Positive

Epitope: PERV Env 517-537
Chemical type: Peptide from protein
Sequence: KEGGLSVALKEECCFYVDHSG
Position: 517-537
Assay category: BCell
Result: Negative

Epitope: PERV Env 517-537
Chemical type: Peptide from protein
Sequence: KEGGLSVALKEECCFYVDHSG
Position: 517-537
Assay category: BCell
Result: Positive
Reference: Marjolein L M Robijn; Carolien A M Koeleman; Cornelis H Hokke; André M Deelder. "Schistosoma mansoni eggs excrete specific free oligosaccharides that are detectable in the urine of the human host." Molecular and biochemical parasitology (2007).

Epitope: Egg glycoprotein O-glycan epitope
Chemical type: Carbohydrate fragment
Source molecule (GenBank): P23126.1
Assay category: BCell
Result: Positive
Reference: Jiafen Hu; Xuwen Peng; Todd D Schell; Lynn R Budgeon; Nancy M Cladel; Neil D Christensen. "An HLA-A2.1-transgenic rabbit model to study immunity to papillomavirus infection." Journal of immunology (Baltimore, Md. : 1950) (2006).

Epitope: SV40LT 281-289
Chemical type: Peptide from protein
Sequence: KCDDVLLLL
Position: 281-289
Source molecule (GenBank): ABU86079.1
Assay category: TCell
Result: Positive
Cell type: splenocyte
Tissue: spleen
Culture conditions: Cell Line / Clone

Epitope: SV40LT 281-289
Chemical type: Peptide from protein
Sequence: KCDDVLLLL
Position: 281-289
Source molecule (GenBank): ABU86079.1
Assay category: TCell
Result: Positive
Cell type: splenocyte
Tissue: spleen
Culture conditions: Cell Line / Clone

Epitope: HPV16 E7 82-90
Chemical type: Peptide from protein
Sequence: LLMGTLGIV
Position: 82-90
Source molecule (GenBank): ABL96585.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: HPV16 E7 82-90
Chemical type: Peptide from protein
Sequence: LLMGTLGIV
Position: 82-90
Source molecule (GenBank): ABL96585.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: HPV16 E7 82-90
Chemical type: Peptide from protein
Sequence: LLMGTLGIV
Position: 82-90
Source molecule (GenBank): ABL96585.1
Assay category: TCell
Result: Positive
Reference: Judit Villén; Ricard A Rodríguez-Mias; José I Núñez; Ernest Giralt; Francisco Sobrino; David Andreu. "Rational dissection of binding surfaces for mimicking of discontinuous antigenic sites." Chemistry & biology (2006).

Epitope: cD1
Chemical type: Peptide, no natural source
Sequence: CTGDKENVYPSQNFGHMHKSEKDRGC
Assay category: BCell
Result: Positive

Epitope: cD1
Chemical type: Peptide, no natural source
Sequence: CTGDKENVYPSQNFGHMHKSEKDRGC
Assay category: BCell
Result: Positive

Epitope: cD1
Chemical type: Peptide, no natural source
Sequence: CTGDKENVYPSQNFGHMHKSEKDRGC
Assay category: BCell
Result: Positive

Epitope: cD1
Chemical type: Peptide, no natural source
Sequence: CTGDKENVYPSQNFGHMHKSEKDRGC
Assay category: BCell
Result: Positive

Epitope: cD1
Chemical type: Peptide, no natural source
Sequence: CTGDKENVYPSQNFGHMHKSEKDRGC
Assay category: BCell
Result: Positive
Reference: Kay S Faaberg; Jason D Hocker; Matthew M Erdman; D L Hank Harris; Eric A Nelson; Montserrat Torremorell; Peter G W Plagemann. "Neutralizing antibody responses of pigs infected with natural GP5 N-glycan mutants of porcine reproductive and respiratory syndrome virus." Viral immunology (2006).

Epitope: PRRSV GP5 VR-P2
Chemical type: Peptide from protein
Sequence: ANASNDSSSHLQLIYNLTLCELNG
Position: 29-52
Source molecule (GenBank): AAD12129.1
Assay category: BCell
Result: Positive
Host:  2-3 weeks

Epitope: PRRSV P5 VR-P3
Chemical type: Peptide from protein
Sequence: ANASNDSSSHLQLIYNLTLCELNGTD
Position: 29-54
Source molecule (GenBank): AAD12129.1
Assay category: BCell
Result: Positive-High
Host:  2-3 weeks

Epitope: PRRSV P5 VR-P3
Chemical type: Peptide from protein
Sequence: ANASNDSSSHLQLIYNLTLCELNGTD
Position: 29-54
Source molecule (GenBank): AAD12129.1
Assay category: BCell
Result: Positive
Host:  2-3 weeks

Epitope: GP5 LV-P2
Chemical type: Peptide from protein
Sequence: FADGNGDSSTYQYIYNLTICELNG
Position: 31-54
Source molecule (GenBank): AAA46278.1
Assay category: BCell
Result: Positive
Host:  2-3 weeks

Epitope: PRRSV GP5 VR-P22
Chemical type: Peptide from protein
Sequence: CIVPFCFAVLANASNDSS
Position: 19-36
Source molecule (GenBank): AAD12129.1
Assay category: BCell
Result: Negative
Host:  2-3 weeks

Epitope: GP5 LV-P6
Chemical type: Peptide from protein
Sequence: SSTYQYIYNL
Position: 38-47
Source molecule (GenBank): AAA46278.1
Assay category: BCell
Result: Negative
Host:  2-3 weeks

Epitope: PRRSV GP5-P7
Chemical type: Peptide from protein
Sequence: IYNLTLCE
Position: 42-49
Source molecule (GenBank): AAD12129.1
Assay category: BCell
Result: Negative
Host:  2-3 weeks

Epitope: PRRSV GP5-P8
Chemical type: Peptide from protein
Sequence: CELNGTDWLA
Position: 48-57
Source molecule (GenBank): AAD12129.1
Assay category: BCell
Result: Negative
Host:  2-3 weeks

Epitope: VR-P6M1
Chemical type: Peptide, no natural source
Sequence: SHLQIYNL
Assay category: BCell
Result: Positive
Host:  2-3 weeks

Epitope: VR-P6M2
Chemical type: Peptide, no natural source
Sequence: SSHLQLTYNL
Assay category: BCell
Result: Negative
Host:  2-3 weeks

Epitope: VR-P6M3
Chemical type: Peptide, no natural source
Sequence: SSTYQLIYNL
Assay category: BCell
Result: Negative
Host:  2-3 weeks
Reference: Aaron J Johnson; Yanice Mendez-Fernandez; Ann M Moyer; Cari R Sloma; Istvan Pirko; Matthew S Block; Moses Rodriguez; Larry R Pease. "Antigen-specific CD8+ T cells mediate a peptide-induced fatal syndrome." Journal of immunology (Baltimore, Md. : 1950) (2005).

Epitope: VP2 (121-130)
Chemical type: Peptide from protein
Sequence: FHAGSLLVFM
Position: 268-277
Source molecule (GenBank): P13899.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: central nervous system (CNS)
Culture conditions: Direct Ex Vivo

Epitope: VP2 (121-130)
Chemical type: Peptide from protein
Sequence: FHAGSLLVFM
Position: 268-277
Source molecule (GenBank): P13899.1
Assay category: TCell
Result: Positive

Epitope: VP2 (121-130)
Chemical type: Peptide from protein
Sequence: FHAGSLLVFM
Position: 268-277
Source molecule (GenBank): P13899.1
Assay category: TCell
Result: Positive

Epitope: VP2 (121-130)
Chemical type: Peptide from protein
Sequence: FHAGSLLVFM
Position: 268-277
Source molecule (GenBank): P13899.1
Assay category: TCell
Result: Positive-Intermediate

Epitope: VP2 (121-130)
Chemical type: Peptide from protein
Sequence: FHAGSLLVFM
Position: 268-277
Source molecule (GenBank): P13899.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: central nervous system (CNS)
Culture conditions: Direct Ex Vivo

Epitope: VP2 (121-130)
Chemical type: Peptide from protein
Sequence: FHAGSLLVFM
Position: 268-277
Source molecule (GenBank): P13899.1
Assay category: TCell
Result: Negative
Reference: Eliandre de Oliveira; Miguel Angel Jiménez-Clavero; José Ignacio Núñez; Francisco Sobrino; David Andreu. "Analysis of the immune response against mixotope peptide libraries from a main antigenic site of foot-and-mouth disease virus." Vaccine (2005).

Epitope: A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTYTASARGDLAHPTTTHARHL
Assay category: BCell
Result: Positive
Host: M

Epitope: A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTYTASARGDLAHPTTTHARHL
Assay category: BCell
Result: Positive
Host: M

Epitope: A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTYTASARGDLAHPTTTHARHL
Assay category: BCell
Result: Positive
Host: M

Epitope: A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTYTASARGDLAHPTTTHARHL
Assay category: BCell
Result: Positive
Host: M

Epitope: A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTYTASARGDLAHPTTTHARHL
Assay category: BCell
Result: Positive
Host: M

Epitope: A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTYTASARGDLAHPTTTHARHL
Assay category: BCell
Result: Positive
Host: M

Epitope: A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTYTASARGDLAHPTTTHARHL
Assay category: BCell
Result: Positive
Host: M

Epitope: A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTYTASARGDLAHPTTTHARHL
Assay category: BCell
Result: Positive
Host: M

Epitope: cyclic A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTCTASARGDLAHPTTTHACHL
Assay category: BCell
Result: Positive
Host: M

Epitope: cyclic A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTCTASARGDLAHPTTTHACHL
Assay category: BCell
Result: Positive
Host: M

Epitope: cyclic A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTCTASARGDLAHPTTTHACHL
Assay category: BCell
Result: Positive
Host: M

Epitope: cyclic A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTCTASARGDLAHPTTTHACHL
Assay category: BCell
Result: Positive
Host: M

Epitope: cyclic A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTCTASARGDLAHPTTTHACHL
Assay category: BCell
Result: Positive
Host: M

Epitope: cyclic A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTCTASARGDLAHPTTTHACHL
Assay category: BCell
Result: Positive
Host: M

Epitope: cyclic A22 (147P)
Chemical type: Peptide, no natural source
Sequence: TTCTASARGDLAHPTTTHACHL
Assay category: BCell
Result: Positive
Host: M

Epitope: Mutant peptide A15S30
Chemical type: Peptide, no natural source
Sequence: YTTSTRGDLAHVTAT
Assay category: BCell
Result: Positive
Host: M

Epitope: Mutant peptide A21S30
Chemical type: Peptide, no natural source
Sequence: YTTSTRGDLAHVTATHARHLP
Assay category: BCell
Result: Positive
Host: M

Epitope: Cyclic mutant peptide 16S30
Chemical type: Peptide, no natural source
Sequence: CTTSTRGDLAHVTATC
Assay category: BCell
Result: Positive
Host: M

Epitope: Mutant peptide A15(FPI)
Chemical type: Peptide, no natural source
Sequence: YTFSPRSDLAHLITT
Assay category: BCell
Result: Negative
Host: M
Reference: Peter M Gray; Subhashini Arimilli; Ellen M Palmer; Griffith D Parks; Martha A Alexander-Miller. "Altered function in CD8+ T cells following paramyxovirus infection of the respiratory tract." Journal of virology (2005).

Epitope: SV5 matrix protein (285-293)
Chemical type: Peptide from protein
Sequence: IPKSAKLFF
Position: 285-293
Source molecule (GenBank): ABC75775.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: SV5 matrix protein (285-293)
Chemical type: Peptide from protein
Sequence: IPKSAKLFF
Position: 285-293
Source molecule (GenBank): ABC75775.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: SV5 matrix protein (285-293)
Chemical type: Peptide from protein
Sequence: IPKSAKLFF
Position: 285-293
Source molecule (GenBank): ABC75775.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: lung
Culture conditions: Direct Ex Vivo
Reference: Yingchun Hou; Xin-Xing Gu. "Development of peptide mimotopes of lipooligosaccharide from nontypeable Haemophilus influenzae as vaccine candidates." Journal of immunology (Baltimore, Md. : 1950) (2003).

Epitope: NTHi minotope 1
Chemical type: Peptide, no natural source
Sequence: NMMRFTSQPPNN
Assay category: BCell
Result: Positive
Host: F

Epitope: NTHi minotope 2
Chemical type: Peptide, no natural source
Sequence: NMMNYIMDPRTH
Assay category: BCell
Result: Positive
Host: F 3.5 months

Epitope: NTHi minotope 2
Chemical type: Peptide, no natural source
Sequence: NMMNYIMDPRTH
Assay category: BCell
Result: Positive
Host: F

Epitope: NTHi minotope 2
Chemical type: Peptide, no natural source
Sequence: NMMNYIMDPRTH
Assay category: BCell
Result: Positive
Host: F

Epitope: NTHi minotope 2
Chemical type: Peptide, no natural source
Sequence: NMMNYIMDPRTH
Assay category: BCell
Result: Positive
Host: F 3.5 months

Epitope: NTHi minotope 3
Chemical type: Peptide, no natural source
Sequence: NMMKYISPPIFL
Assay category: BCell
Result: Positive
Host: F 3.5 months

Epitope: NTHi minotope 3
Chemical type: Peptide, no natural source
Sequence: NMMKYISPPIFL
Assay category: BCell
Result: Positive
Host: F 3.5 months

Epitope: NTHi minotope 3
Chemical type: Peptide, no natural source
Sequence: NMMKYISPPIFL
Assay category: BCell
Result: Positive
Host: F

Epitope: NTHi minotope 3
Chemical type: Peptide, no natural source
Sequence: NMMKYISPPIFL
Assay category: BCell
Result: Positive
Host: F

Epitope: NTHi minotope 4
Chemical type: Peptide, no natural source
Sequence: NMMRFTELSTPS
Assay category: BCell
Result: Positive
Host: F 3.5 months

Epitope: NTHi minotope 4
Chemical type: Peptide, no natural source
Sequence: NMMRFTELSTPS
Assay category: BCell
Result: Positive
Host: F 3.5 months

Epitope: NTHi minotope 4
Chemical type: Peptide, no natural source
Sequence: NMMRFTELSTPS
Assay category: BCell
Result: Positive
Host: F

Epitope: NTHi minotope 4
Chemical type: Peptide, no natural source
Sequence: NMMRFTELSTPS
Assay category: BCell
Result: Positive
Host: F
Reference: Viviana Marin-Esteban; Kirsten Falk; Olaf Rötzschke. "Small-molecular compounds enhance the loading of APC with encephalitogenic MBP protein." Journal of autoimmunity (2003).

Epitope: MBP 86-100
Chemical type: Peptide from protein
Sequence: NPVVHFFKNIVTPRT
Position: 85-99
Source molecule (GenBank): CAG38771.1
Assay category: TCell
Result: Positive
Cell type: T cell hybridoma
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: MBP 86-100
Chemical type: Peptide from protein
Sequence: NPVVHFFKNIVTPRT
Position: 85-99
Source molecule (GenBank): CAG38771.1
Assay category: MhcBinding
Result: Positive

Epitope: MBP 86-100
Chemical type: Peptide from protein
Sequence: NPVVHFFKNIVTPRT
Position: 85-99
Source molecule (GenBank): CAG38771.1
Assay category: MhcBinding
Result: Positive

Epitope: HA 306-318
Chemical type: Peptide from protein
Sequence: PKYVKQNTLKLAT
Position: 306-318
Source molecule (GenBank): AAA43143.1
Assay category: MhcBinding
Result: Positive-Low

Epitope: HA 306-318
Chemical type: Peptide from protein
Sequence: PKYVKQNTLKLAT
Position: 306-318
Source molecule (GenBank): AAA43143.1
Assay category: MhcBinding
Result: Positive
Reference: Carla A Herberts; Hugo M Meiring; Jacqueline A M van Gaans-van den Brink; Ed van der Heeft; Martien C M Poelen; Claire J P Boog; Ad P J M de Jong; Cécile A C M van Els. "Dynamics of measles virus protein expression are reflected in the MHC class I epitope display." Molecular immunology (2003).

Epitope: MV-C (84-92)
Chemical type: Peptide from protein
Sequence: KLWESPQEI
Position: 84-92
Source molecule (GenBank): BAB60863.1
Assay category: MhcLigandElution
Result: Positive

Epitope: MV-M (211-219)
Chemical type: Peptide from protein
Sequence: QLPEATFMV
Position: 211-219
Source molecule (GenBank): BAB60864.1
Assay category: MhcLigandElution
Result: Positive

Epitope: MV-F (438-446)
Chemical type: Peptide from protein
Sequence: RRYPDAVYL
Position: 438-446
Source molecule (GenBank): BAB60865.1
Assay category: MhcLigandElution
Result: Positive
Reference: Mineki Saito; Itsuro Higuchi; Akiko Saito; Shuji Izumo; Koichiro Usuku; Charles R M Bangham; Mitsuhiro Osame. "Molecular analysis of T cell clonotypes in muscle-infiltrating lymphocytes from patients with human T lymphotropic virus type 1 polymyositis." The Journal of infectious diseases (2002).

Epitope: Tax11-19
Chemical type: Peptide from protein
Sequence: LLFGYPVYV
Position: 11-19
Source molecule (GenBank): P0C213.1
Assay category: TCell
Result: Positive
Host: F 48 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Massimo Costalonga; James S Hodges; Mark C Herzberg. "Streptococcus sanguis modulates type II collagen-induced arthritis in DBA/1J mice." Journal of immunology (Baltimore, Md. : 1950) (2002).

Epitope: Synthetic 19-mer arthritogenic sequence
Chemical type: Peptide, no natural source
Sequence: GELGIAGFKGEQGPKGETG
Assay category: TCell
Result: Positive
Host:  8 weeks
Cell type: T cell
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Synthetic 19-mer arthritogenic sequence
Chemical type: Peptide, no natural source
Sequence: GELGIAGFKGEQGPKGETG
Assay category: TCell
Result: Positive
Host:  8 weeks
Cell type: T cell
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Synthetic 19-mer arthritogenic sequence
Chemical type: Peptide, no natural source
Sequence: GELGIAGFKGEQGPKGETG
Assay category: TCell
Result: Positive
Host:  8 weeks
Cell type: T cell
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: Synthetic 19-mer arthritogenic sequence
Chemical type: Peptide, no natural source
Sequence: GELGIAGFKGEQGPKGETG
Assay category: TCell
Result: Negative
Host:  8 weeks
Cell type: T cell
Tissue: lymph node
Culture conditions: Direct Ex Vivo
Reference: Anna S Kadish; Patrick Timmins; Yuexian Wang; Gloria Y F Ho; Robert D Burk; John Ketz; Wu He; Seymour L Romney; Anne Johnson; Ruth Angeletti; Maria Abadi. "Regression of cervical intraepithelial neoplasia and loss of human papillomavirus (HPV) infection is associated with cell-mediated immune responses to an HPV type 16 E7 peptide." Cancer epidemiology, biomarkers &#38; prevention :  a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. (2002).

Epitope: E7 105
Chemical type: Peptide from protein
Sequence: EIDGPAGQAEPDRAHYNI
Position: 37-54
Source molecule (GenBank): AAD33253.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: E7 105
Chemical type: Peptide from protein
Sequence: EIDGPAGQAEPDRAHYNI
Position: 37-54
Source molecule (GenBank): AAD33253.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: E6 370
Chemical type: Peptide from protein
Sequence: PRKLPQLCTELQTTI
Position: 9-23
Source molecule (GenBank): ACN22517.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: E6 370
Chemical type: Peptide from protein
Sequence: PRKLPQLCTELQTTI
Position: 9-23
Source molecule (GenBank): ACN22517.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: D R Bengurić; B Dungu; F Thiaucourt; D H du Plessis. "Phage displayed peptides and anti-idiotype antibodies recognised by a monoclonal antibody directed against a diagnostic antigen of Mycoplasma capricolum subsp. capripneumoniae." Veterinary microbiology (2001).

Epitope: X1
Chemical type: Peptide, no natural source
Sequence: SCESPSWIVQYWLRCWV
Assay category: BCell
Result: Positive
Host:  8 weeks

Epitope: X2
Chemical type: Peptide, no natural source
Sequence: LCKGPDALCLSNLTPML
Assay category: BCell
Result: Positive
Host:  8 weeks