Reference: Lotta Holm; Peter Kjellén; Rikard Holmdahl; Jan Kihlberg. "Identification of the minimal glycopeptide core recognized by T cells in a model for rheumatoid arthritis." Bioorganic & medicinal chemistry (2005).

Epitope: CLIP
Chemical type: Peptide from protein
Sequence: SQMRMATPLLMRP
Position: 88-100
Source molecule (GenBank): P04441.3
Assay category: MhcBinding
Result: Positive-High

Epitope: m259-273
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKGET
Position: 459-473
Source molecule (GenBank): P28481.2
Assay category: MhcBinding
Result: Positive-Low

Epitope: r256-270
Chemical type: Peptide from protein
Sequence: GEPGIAGFKGEQGPK
Position: 388-402
Source molecule (GenBank): P05539.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: r256-270
Chemical type: Peptide from protein
Sequence: GEPGIAGFKGEQGPK
Position: 388-402
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: N258
Chemical type: Peptide from protein
Sequence: PGIAGFKGEQGPKGETGP
Position: 390-407
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-High

Epitope: N260
Chemical type: Peptide from protein
Sequence: IAGFKGEQGPKGETGP
Position: 392-407
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-High

Epitope: N262
Chemical type: Peptide from protein
Sequence: GFKGEQGPKGETGP
Position: 394-407
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-Low

Epitope: N262
Chemical type: Peptide from protein
Sequence: GFKGEQGPKGETGP
Position: 394-407
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Negative

Epitope: N263
Chemical type: Peptide from protein
Sequence: FKGEQGPKGETGP
Position: 395-407
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: N263
Chemical type: Peptide from protein
Sequence: FKGEQGPKGETGP
Position: 395-407
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Negative

Epitope: N264
Chemical type: Peptide from protein
Sequence: KGEQGPKGETGP
Position: 396-407
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: N264
Chemical type: Peptide from protein
Sequence: KGEQGPKGETGP
Position: 396-407
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Negative

Epitope: C274
Chemical type: Peptide from protein
Sequence: IAGFKGEQGPKGETG
Position: 392-406
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-High

Epitope: C273
Chemical type: Peptide from protein
Sequence: IAGFKGEQGPKGET
Position: 392-405
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-High

Epitope: C272
Chemical type: Peptide from protein
Sequence: IAGFKGEQGPKGE
Position: 392-404
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-High

Epitope: C271
Chemical type: Peptide from protein
Sequence: IAGFKGEQGPKG
Position: 392-403
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-High

Epitope: C270
Chemical type: Peptide from protein
Sequence: IAGFKGEQGPK
Position: 392-402
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-High

Epitope: C269
Chemical type: Peptide from protein
Sequence: IAGFKGEQGP
Position: 392-401
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-High

Epitope: C268
Chemical type: Peptide from protein
Sequence: IAGFKGEQG
Position: 392-400
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive

Epitope: C267
Chemical type: Peptide from protein
Sequence: IAGFKGEQ
Position: 392-399
Source molecule (GenBank): P05539.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: C267
Chemical type: Peptide from protein
Sequence: IAGFKGEQ
Position: 392-399
Source molecule (GenBank): P05539.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: C267
Chemical type: Peptide from protein
Sequence: IAGFKGEQ
Position: 392-399
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive

Epitope: C266
Chemical type: Peptide from protein
Sequence: IAGFKGE
Position: 392-398
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Positive-Low

Epitope: C265
Chemical type: Peptide from protein
Sequence: IAGFKG
Position: 392-397
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Negative

Epitope: C264
Chemical type: Peptide from protein
Sequence: IAGFK
Position: 392-396
Source molecule (GenBank): P05539.2
Assay category: MhcBinding
Result: Negative