LiteFold/IEDB huggingface dataset:
Reference: Yue-Xiang Li; Hui Zhao; Rui-Yuan Cao; Yong-Qiang Deng; Jian-Feng Han; Shun-Ya Zhu; Jie Ma; Long Liu; E-De Qin; Cheng-Feng Qin. "Recombinant tandem multi-linear neutralizing epitopes of human enterovirus 71 elicited protective immunity in mice." Virology journal (2014).

Epitope: VP1-SP55
Chemical type: Peptide from protein
Sequence: PESRESLAWQTATNP
Position: 163-177
Source molecule (GenBank): ABI20542.1
Assay category: BCell
Result: Positive-Low
Host: F 6 weeks

Epitope: VP1-SP70
Chemical type: Peptide from protein
Sequence: YPTFGEHKQEKDLEY
Position: 208-222
Source molecule (GenBank): ABI20542.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: VP2-SP28
Chemical type: Peptide from protein
Sequence: GTGTEDSHPPYKQ
Position: 138-150
Source molecule (GenBank): ABV00421.1
Assay category: BCell
Result: Positive
Host: F 6 weeks
Reference: Carylinda Serna; Joshua A Lara; Silas P Rodrigues; Alexandre F Marques; Igor C Almeida; Rosa A Maldonado. "A synthetic peptide from Trypanosoma cruzi mucin-like associated surface protein as candidate for a vaccine against Chagas disease." Vaccine (2014).

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: BCell
Result: Positive

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: BCell
Result: Positive
Host: F 6-8 weeks

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks

Epitope: MASPpep
Chemical type: Peptide from protein
Sequence: DAENPGGEVFNDNKKGLSRV
Position: 89-108
Source molecule (GenBank): XP_820771.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Reference: Koushik Roy; Kshudiram Naskar; Moumita Ghosh; Syamal Roy. "Class II MHC/peptide interaction in Leishmania donovani infection: implications in vaccine design." Journal of immunology (Baltimore, Md. : 1950) (2014).

Epitope: LACK 156–173
Chemical type: Peptide from protein
Sequence: ICFSPSLEHPIVVSGSWD
Position: 156-173
Source molecule (GenBank): AAB87695.1
Assay category: TCell
Result: Positive
Cell type: T cell
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: LACK 156–173
Chemical type: Peptide from protein
Sequence: ICFSPSLEHPIVVSGSWD
Position: 156-173
Source molecule (GenBank): AAB87695.1
Assay category: TCell
Result: Positive
Cell type: T cell
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: LACK 156–173
Chemical type: Peptide from protein
Sequence: ICFSPSLEHPIVVSGSWD
Position: 156-173
Source molecule (GenBank): AAB87695.1
Assay category: TCell
Result: Positive
Cell type: T cell
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: LACK 156–173
Chemical type: Peptide from protein
Sequence: ICFSPSLEHPIVVSGSWD
Position: 156-173
Source molecule (GenBank): AAB87695.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 0.00000145
Reference: Nicholas Svitek; Andreas Martin Hansen; Lucilla Steinaa; Rosemary Saya; Elias Awino; Morten Nielsen; Søren Buus; Vishvanath Nene. "Use of "one-pot, mix-and-read" peptide-MHC class I tetramers and predictive algorithms to improve detection of cytotoxic T lymphocyte responses in cattle." Veterinary research (2014).

Epitope: Tp1 214-224
Chemical type: Peptide from protein
Sequence: VGYPKVKEEML
Position: 214-224
Source molecule (GenBank): XP_762973.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Tp5 87-95
Chemical type: Peptide from protein
Sequence: SKADVIAKY
Position: 87-95
Source molecule (GenBank): XP_765334.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp2 49-59
Chemical type: Peptide from protein
Sequence: KSSHGMGKVGK
Position: 49-59
Source molecule (GenBank): XP_765583.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp8 379-387
Chemical type: Peptide from protein
Sequence: CGAELNHFL
Position: 379-387
Source molecule (GenBank): XP_764709.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp2 96-104
Chemical type: Peptide from protein
Sequence: FAQSLVCVL
Position: 96-104
Source molecule (GenBank): XP_765583.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp9 67-76
Chemical type: Peptide from protein
Sequence: AKFPGMKKSK
Position: 67-76
Source molecule (GenBank): XP_765463.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp2 29-37
Chemical type: Peptide from protein
Sequence: EELKKLGML
Position: 29-37
Source molecule (GenBank): XP_765583.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp2 29-37
Chemical type: Peptide from protein
Sequence: EELKKLGML
Position: 29-37
Source molecule (GenBank): XP_765583.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp2 29-37
Chemical type: Peptide from protein
Sequence: EELKKLGML
Position: 29-37
Source molecule (GenBank): XP_765583.1
Assay category: MhcBinding
Result: Positive

Epitope: Tp2 27-37
Chemical type: Peptide from protein
Sequence: SHEELKKLGML
Position: 27-37
Source molecule (GenBank): XP_765583.1
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp2 27-37
Chemical type: Peptide from protein
Sequence: SHEELKKLGML
Position: 27-37
Source molecule (GenBank): XP_765583.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp2 27-37
Chemical type: Peptide from protein
Sequence: SHEELKKLGML
Position: 27-37
Source molecule (GenBank): XP_765583.1
Assay category: MhcBinding
Result: Negative
Reference: Chandirasegaran Massilamany; Francine Marciano-Cabral; Bruno da Rocha-Azevedo; Melissa Jamerson; Arunakumar Gangaplara; David Steffen; Rana Zabad; Zsolt Illes; Raymond A Sobel; Jay Reddy. "SJL mice infected with Acanthamoeba castellanii develop central nervous system autoimmunity through the generation of cross-reactive T cells for myelin antigens." PloS one (2014).

Epitope: ACA (83–95)
Chemical type: Peptide from protein
Sequence: YFLLKWLGHPNVS
Position: 83-95
Source molecule (GenBank): ABD46543.1
Assay category: TCell
Result: Positive
Host: F 3-4 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Short Term Restimulated

Epitope: ACA (83–95)
Chemical type: Peptide from protein
Sequence: YFLLKWLGHPNVS
Position: 83-95
Source molecule (GenBank): ABD46543.1
Assay category: TCell
Result: Positive
Host: F 3-4 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: NAD (108–120)
Chemical type: Peptide from protein
Sequence: VVFFKNIILIGFL
Position: 108-120
Source molecule (GenBank): NP_042534.1
Assay category: TCell
Result: Positive
Host: F 3-4 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Positive
Host: F 3-4 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Positive
Host: F 3-4 weeks

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Positive
Host: F 3-4 weeks

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Positive
Host: F 3-4 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Short Term Restimulated

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Negative
Host: F 3-4 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: PLP 139-151
Chemical type: Peptide, no natural source
Sequence: HSLGKWLGHPDKF
Assay category: TCell
Result: Negative
Host: F 3-4 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Kook-Heon Seo; Li Zhou; Dongmei Meng; Jianrui Xu; Zhong Dong; Qing-Sheng Mi. "Loss of microRNAs in thymus perturbs invariant NKT cell development and function." Cellular & molecular immunology (2010).

Epitope: PBS-57
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive
Host:  4-7 weeks
Cell type: NKT cells
Tissue: thymus
Culture conditions: Direct Ex Vivo

Epitope: α-GalCer
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive
Host:  4-7 weeks
Cell type: thymocyte
Tissue: thymus
Culture conditions: Direct Ex Vivo

Epitope: α-GalCer
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive
Host:  4-7 weeks
Cell type: NKT cells
Tissue: spleen
Culture conditions: In Vivo

Epitope: α-GalCer
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive
Host:  4-7 weeks
Cell type: NKT cells
Tissue: spleen
Culture conditions: In Vivo

Epitope: α-GalCer
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive
Host:  4-7 weeks
Cell type: NKT cells
Tissue: spleen
Culture conditions: In Vivo
Reference: Carola H Ries; Michael A Cannarile; Sabine Hoves; Jörg Benz; Katharina Wartha; Valeria Runza; Flora Rey-Giraud; Leon P Pradel; Friedrich Feuerhake; Irina Klaman; Tobin Jones; Ute Jucknischke; Stefan Scheiblich; Klaus Kaluza; Ingo H Gorr; Antje Walz; Keelara Abiraj; Philippe A Cassier; Antonio Sica; Carlos Gomez-Roca; Karin E de Visser; Antoine Italiano; Christophe Le Tourneau; Jean-Pierre Delord; Hyam Levitsky; Jean-Yves Blay; Dominik Rüttinger. "Targeting tumor-associated macrophages with anti-CSF-1R antibody reveals a strategy for cancer therapy." Cancer cell (2014).

Epitope: mAb RG7155 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: T314, V315, G316, E317, N320, K350, S367, P369, R370, L371, K372, P373, E375, P401, P402, E403, V491, S493, G494
Source molecule (GenBank): P07333.2
Assay category: BCell
Result: Positive

Epitope: mAb RG7155 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: T314, V315, G316, E317, N320, K350, S367, P369, R370, L371, K372, P373, E375, P401, P402, E403, V491, S493, G494
Source molecule (GenBank): P07333.2
Assay category: BCell
Result: Positive
Quantitative measurement: 2.6

Epitope: mAb RG7155 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: T314, V315, G316, E317, N320, K350, S367, P369, R370, L371, K372, P373, E375, P401, P402, E403, V491, S493, G494
Source molecule (GenBank): P07333.2
Assay category: BCell
Result: Positive

Epitope: mAb RG7155 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: T314, V315, G316, E317, N320, K350, S367, P369, R370, L371, K372, P373, E375, P401, P402, E403, V491, S493, G494
Source molecule (GenBank): P07333.2
Assay category: BCell
Result: Positive
Quantitative measurement: 0.2

Epitope: mAb RG7155 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: T314, V315, G316, E317, N320, K350, S367, P369, R370, L371, K372, P373, E375, P401, P402, E403, V491, S493, G494
Source molecule (GenBank): P07333.2
Assay category: BCell
Result: Positive
Quantitative measurement: 0.2
Reference: Chrislaine Withers-Martinez; Malcolm Strath; Fiona Hackett; Lesley F Haire; Steven A Howell; Philip A Walker; Evangelos Christodoulou; Guy G Dodson; Michael J Blackman. "The malaria parasite egress protease SUB1 is a calcium-dependent redox switch subtilisin." Nature communications (2014).

Epitope: Epitope of NIMP.M7 Fab on Plasmodium falciparum subtilisin
Chemical type: Discontinuous protein residues
Discontinuous residues: V365, M366, S367, R369, E389, L392, K393, L395, H396, G397, R398, K399, D403, D410, I412, K456
Source molecule (GenBank): CAC80338.1
Assay category: BCell
Result: Positive

Epitope: Epitope of NIMP.M7 Fab on Plasmodium falciparum subtilisin
Chemical type: Discontinuous protein residues
Discontinuous residues: V365, M366, S367, R369, E389, L392, K393, L395, H396, G397, R398, K399, D403, D410, I412, K456
Source molecule (GenBank): CAC80338.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.25

Epitope: Epitope of NIMP.M7 Fab on Plasmodium falciparum subtilisin
Chemical type: Discontinuous protein residues
Discontinuous residues: V365, M366, S367, R369, E389, L392, K393, L395, H396, G397, R398, K399, D403, D410, I412, K456
Source molecule (GenBank): CAC80338.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.26

Epitope: Epitope of NIMP.M7 Fab on Plasmodium falciparum subtilisin
Chemical type: Discontinuous protein residues
Discontinuous residues: V365, M366, S367, R369, E389, L392, K393, L395, H396, G397, R398, K399, D403, D410, I412, K456
Source molecule (GenBank): CAC80338.1
Assay category: BCell
Result: Positive

Epitope: Epitope of NIMP.M7 Fab on Plasmodium falciparum subtilisin
Chemical type: Discontinuous protein residues
Discontinuous residues: V365, M366, S367, R369, E389, L392, K393, L395, H396, G397, R398, K399, D403, D410, I412, K456
Source molecule (GenBank): CAC80338.1
Assay category: BCell
Result: Positive
Reference: Dominic Birth; Wei-Chun Kao; Carola Hunte. "Structural analysis of atovaquone-inhibited cytochrome bc1 complex reveals the molecular basis of antimalarial drug action." Nature communications (2014).

Epitope: 18E11 Fv epitope of Rieske protein of cytochrome bc(1) complex
Chemical type: Discontinuous protein residues
Discontinuous residues: P123, H124, I126, Q127, N130, S131, V132, D133, M134, T142, D143, A144, V147, K148, D149, P150
Source molecule (GenBank): P08067.1
Assay category: BCell
Result: Positive
Quantitative measurement: 3.04
Reference: Nobuhiro Yuki; Chiaki Yanaka; Makoto Sudo; Miyuki Funakoshi; Hideharu Ishida; Masahiro Mori; Fumio Kanda; Koichi Hirata. "Lower motor neuron syndrome associated with IgG anti-GM1 antibodies revisited." Journal of neuroimmunology (2014).

Epitope: GM1
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive

Epitope: GM1
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive

Epitope: GM2
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative

Epitope: GM2
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive

Epitope: X1
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive

Epitope: X1
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative

Epitope: X2
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive

Epitope: X2
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive

Epitope: GD1a
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative

Epitope: GD1a
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative

Epitope: GD1b
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative

Epitope: GD1b
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative

Epitope: GT1b
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative

Epitope: GT1b
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Negative
Reference: Panayota Kolypetri; Karen Carayanniotis; Shofiur Rahman; Paris E Georghiou; Vassiliki Magafa; Paul Cordopatis; George Carayanniotis. "The thyroxine-containing thyroglobulin peptide (aa 2549-2560) is a target epitope in iodide-accelerated spontaneous autoimmune thyroiditis." Journal of immunology (Baltimore, Md. : 1950) (2014).

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: BCell
Result: Positive
Host:  6-8 weeks

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: BCell
Result: Positive
Host:  6-8 weeks

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: BCell
Result: Negative
Host:  6-8 weeks

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: TCell
Result: Positive-Low
Host:  6-8 weeks
Cell type: T cell hybridoma
Tissue: lymph node
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: TCell
Result: Positive
Host:  6-8 weeks
Cell type: lymphocyte
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: TCell
Result: Positive-Low
Host:  6-8 weeks
Cell type: lymphocyte
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: TCell
Result: Negative
Host:  6-8 weeks
Cell type: lymphocyte
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: TCell
Result: Positive
Host:  6-8 weeks

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: TCell
Result: Positive
Host:  6-8 weeks
Cell type: lymphocyte
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: T4p(2553)
Chemical type: Peptide from protein
Sequence: STDDYASFSRAL
Position: 2568-2579
Source molecule (GenBank): O08710.2
Assay category: TCell
Result: Positive
Host:  6-8 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo
Reference: Evelien E Bouwmans; Peter A Smethurst; Stephen F Garner; Willem H Ouwehand; Sarah L Morley. "Expression of a single-chain human leukocyte antigen-DRA/DRB3*01:01 molecule and differential binding of a monoclonal antibody in the presence of specifically bound human platelet antigen-1a peptide." Transfusion (2014).

Epitope: beta3-L33
Chemical type: Peptide from protein
Sequence: AWCSDEALPLGS
Position: 50-61
Source molecule (GenBank): P05106.2
Assay category: MhcBinding
Result: Positive

Epitope: beta3-P33
Chemical type: Peptide from protein
Sequence: AWCSDEALPPGS
Position: 50-61
Source molecule (GenBank): AAX33645.1
Assay category: MhcBinding
Result: Negative
Reference: J Charles Whitbeck; Zhen-Yu Huang; Tina M Cairns; John R Gallagher; Huan Lou; Manuel Ponce-de-Leon; Robert B Belshe; Roselyn J Eisenberg; Gary H Cohen. "Repertoire of epitopes recognized by serum IgG from humans vaccinated with herpes simplex virus 2 glycoprotein D." Journal of virology (2014).

Epitope: mAb DL11
Chemical type: Discontinuous protein residues
Discontinuous residues: Q157, S165
Source molecule (GenBank): ABU45435.1
Assay category: BCell
Result: Positive
Host: F 18-30 years

Epitope: mAb MC23
Chemical type: Discontinuous protein residues
Discontinuous residues: T238, S241
Source molecule (GenBank): ABU45435.1
Assay category: BCell
Result: Positive
Host: F 18-30 years

Epitope: mAb MC2
Chemical type: Discontinuous protein residues
Discontinuous residues: P271
Source molecule (GenBank): ABU45435.1
Assay category: BCell
Result: Positive
Host: F 18-30 years

Epitope: mAb MC5
Chemical type: Discontinuous protein residues
Discontinuous residues: A102, P103
Source molecule (GenBank): ABU45435.1
Assay category: BCell
Result: Positive
Host: F 18-30 years

Epitope: gD (1-20)
Chemical type: Peptide from protein
Sequence: KYALADPSLKMADPNRFRGK
Position: 26-45
Source molecule (GenBank): ABU45435.1
Assay category: BCell
Result: Positive
Host: F 18-30 years
Reference: Chris King; Esteban N Garza; Ronit Mazor; Jonathan L Linehan; Ira Pastan; Marion Pepper; David Baker. "Removing T-cell epitopes with computational protein design." Proceedings of the National Academy of Sciences of the United States of America (2014).

Epitope: sfGFP 82-96
Chemical type: Peptide from protein
Sequence: DFFKSAMPEGYVQER
Position: 82-96
Source molecule (GenBank): P42212.1
Assay category: TCell
Result: Positive-High
Cell type: T cell CD4+
Tissue: Spleen
Culture conditions: Direct Ex Vivo

Epitope: sfGFP 226-234
Chemical type: Peptide from protein
Sequence: AAGITHGMD
Position: 226-234
Source molecule (GenBank): P42212.1
Assay category: TCell
Result: Positive-Intermediate
Cell type: T cell CD4+
Tissue: Spleen
Culture conditions: Direct Ex Vivo

Epitope: sfGFP 7-16
Chemical type: Peptide from protein
Sequence: LFTGVVPILV
Position: 7-16
Source molecule (GenBank): P42212.1
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD4+
Tissue: Spleen
Culture conditions: Direct Ex Vivo

Epitope: sfGFP.di.v3.2 (84 analog)
Chemical type: Peptide, no natural source
Sequence: DFMKSAMPDGYVQER
Assay category: TCell
Result: Negative
Cell type: T cell CD4+
Tissue: Spleen
Culture conditions: Direct Ex Vivo

Epitope: sfGFP.di.v3.2 (223/224 analog)
Chemical type: Peptide, no natural source
Sequence: AAGIQEEMD
Assay category: TCell
Result: Negative
Cell type: T cell CD4+
Tissue: Spleen
Culture conditions: Direct Ex Vivo

Epitope: peptide 93
Chemical type: Peptide from protein
Sequence: GPEEEGGRLETILGW
Position: 569-583
Source molecule (GenBank): P11439.2
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: Blood
Culture conditions: Short Term Restimulated

Epitope: peptide 93
Chemical type: Peptide from protein
Sequence: GPEEEGGRLETILGW
Position: 569-583
Source molecule (GenBank): P11439.2
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: Blood
Culture conditions: Short Term Restimulated

Epitope: peptide 94
Chemical type: Peptide from protein
Sequence: EEGGRLETILGWPLA
Position: 572-586
Source molecule (GenBank): P11439.2
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: Blood
Culture conditions: Short Term Restimulated

Epitope: peptide 94
Chemical type: Peptide from protein
Sequence: EEGGRLETILGWPLA
Position: 572-586
Source molecule (GenBank): P11439.2
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: Blood
Culture conditions: Short Term Restimulated