LiteFold/IEDB huggingface dataset:
Reference: Mohadeseh Hasanpourghadi; Mikhail Novikov; Dakota Newman; ZhiQuan Xiang; Xiang Yang Zhou; Colin Magowan; Hildegund C J Ertl. "Hepatitis B virus polymerase-specific T cell epitopes shift in a mouse model of chronic infection." Virology journal (2021).

Epitope: Peptide-11
Chemical type: Peptide from protein
Sequence: WTHKVGNFTGLYSST
Position: 52-66
Source molecule (GenBank): P03155.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide-11
Chemical type: Peptide from protein
Sequence: WTHKVGNFTGLYSST
Position: 52-66
Source molecule (GenBank): P03155.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide-51
Chemical type: Peptide from protein
Sequence: DFSQFSRGITRVSWP
Position: 386-400
Source molecule (GenBank): P03158.2
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide-51
Chemical type: Peptide from protein
Sequence: DFSQFSRGITRVSWP
Position: 386-400
Source molecule (GenBank): P03158.2
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide-53
Chemical type: Peptide from protein
Sequence: RVSWPKFAVPNLQSL
Position: 390-404
Source molecule (GenBank): P03155.1
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide-53
Chemical type: Peptide from protein
Sequence: RVSWPKFAVPNLQSL
Position: 390-404
Source molecule (GenBank): P03155.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Katarzyna Piadel; Amin Haybatollahi; Angus George Dalgleish; Peter Lawrence Smith. "Selection and T-cell antigenicity of synthetic long peptides derived from SARS-CoV-2." The Journal of general virology (2022).

Epitope: NP 65-94
Chemical type: Peptide from protein
Sequence: FPRGQGVPINSGPDDQIGYYRRATRRI
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NP 65-94
Chemical type: Peptide from protein
Sequence: FPRGQGVPINSGPDDQIGYYRRATRRI
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NP 65-94
Chemical type: Peptide from protein
Sequence: FPRGQGVPINSGPDDQIGYYRRATRRI
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: M 136-158
Chemical type: Peptide from protein
Sequence: SELVIGAVILRGHLRIAGHHLGR
Position: 136-158
Source molecule (GenBank): P0DTC5.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: M 136-158
Chemical type: Peptide from protein
Sequence: SELVIGAVILRGHLRIAGHHLGR
Position: 136-158
Source molecule (GenBank): P0DTC5.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: M 136-158
Chemical type: Peptide from protein
Sequence: SELVIGAVILRGHLRIAGHHLGR
Position: 136-158
Source molecule (GenBank): P0DTC5.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NSP16 6821-45
Chemical type: Peptide from protein
Sequence: KYTQLCQYLNTLTLAVPYNMRVIHF
Position: 6844-6868
Source molecule (GenBank): P0DTD1.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NSP16 6821-45
Chemical type: Peptide from protein
Sequence: KYTQLCQYLNTLTLAVPYNMRVIHF
Position: 6844-6868
Source molecule (GenBank): P0DTD1.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NSP16 6821-45
Chemical type: Peptide from protein
Sequence: KYTQLCQYLNTLTLAVPYNMRVIHF
Position: 6844-6868
Source molecule (GenBank): P0DTD1.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Nicholas Svitek; Rosemary Saya; Houshuang Zhang; Vishvanath Nene; Lucilla Steinaa. "Systematic Determination of TCR-Antigen and Peptide-MHC Binding Kinetics among Field Variants of a  Polymorphic CTL Epitope." Journal of immunology (Baltimore, Md. : 1950) (2022).

Epitope: Tp9 67-74
Chemical type: Peptide from protein
Sequence: AKFPGMKK
Position: 67-74
Source molecule (GenBank): EAN33180.1
Assay category: MhcBinding
Result: Positive-Intermediate

Epitope: Tp9 v3
Chemical type: Peptide from protein
Sequence: EKFQRMGIG
Position: 64-72
Source molecule (GenBank): AFC18356.1
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp9 v3
Chemical type: Peptide from protein
Sequence: EKFQRMGIG
Position: 64-72
Source molecule (GenBank): AFC18356.1
Assay category: MhcBinding
Result: Positive-Intermediate
Quantitative measurement: 46.52

Epitope: Tp9 G1
Chemical type: Peptide, no natural source
Sequence: GKFPGMKKS
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp9 G1
Chemical type: Peptide, no natural source
Sequence: GKFPGMKKS
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Tp9 G1
Chemical type: Peptide, no natural source
Sequence: GKFPGMKKS
Assay category: MhcBinding
Result: Positive-High
Quantitative measurement: 13.4
Reference: André Felipe Streck; Cláudio Wageck Canal; Uwe Truyen. "Viral Fitness and Antigenic Determinants of Porcine Parvovirus at the Amino Acid Level of the Capsid Protein." Journal of virology (2022).

Epitope: NADL2-A414-E419-S436
Chemical type: Discontinuous protein residues
Discontinuous residues: A414, E419, S436
Source molecule (GenBank): NP_757372.1
Assay category: BCell
Result: Positive
Reference: Jeong Soo Sung; Ji-Hong Bong; Soo Jeong Lee; Jaeyong Jung; Min-Jung Kang; Misu Lee; Won-Bo Shim; Joachim Jose; Jae-Chul Pyun. "One-step immunoassay for food allergens based on screened mimotopes from autodisplayed F<sub>V</sub>-antibody library." Biosensors &#38; bioelectronics. (2022).

Epitope: CDR3 region Mackerel
Chemical type: Peptide, no natural source
Sequence: CFTLVIGDIDF
Assay category: BCell
Result: Positive
Quantitative measurement: 3600.0
Host: F

Epitope: CDR3 region Mackerel
Chemical type: Peptide, no natural source
Sequence: CFTLVIGDIDF
Assay category: BCell
Result: Positive
Host: F
Reference: Harumasa Yokota; Hiroki Hayashi; Junya Hanaguri; Satoru Yamagami; Akifumi Kushiyama; Hironori Nakagami; Taiji Nagaoka. "Effect of prorenin peptide vaccine on the early phase of diabetic retinopathy in a murine model of type 2 diabetes." PloS one (2022).

Epitope: E2
Chemical type: Peptide from protein
Sequence: TFERIPLKKMPS
Position: 28-39
Source molecule (GenBank): NP_112469.1
Assay category: BCell
Result: Positive
Host: M 8 weeks

Epitope: E2
Chemical type: Peptide from protein
Sequence: TFERIPLKKMPS
Position: 28-39
Source molecule (GenBank): NP_112469.1
Assay category: BCell
Result: Positive
Host: M 8 weeks

Epitope: E2
Chemical type: Peptide from protein
Sequence: TFERIPLKKMPS
Position: 28-39
Source molecule (GenBank): NP_112469.1
Assay category: BCell
Result: Positive
Host: M 8 weeks

Epitope: E2
Chemical type: Peptide from protein
Sequence: TFERIPLKKMPS
Position: 28-39
Source molecule (GenBank): NP_112469.1
Assay category: BCell
Result: Positive
Host: M 8 weeks

Epitope: E2
Chemical type: Peptide from protein
Sequence: TFERIPLKKMPS
Position: 28-39
Source molecule (GenBank): NP_112469.1
Assay category: TCell
Result: Negative
Host: M 8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: E2
Chemical type: Peptide from protein
Sequence: TFERIPLKKMPS
Position: 28-39
Source molecule (GenBank): NP_112469.1
Assay category: TCell
Result: Negative
Host: M 8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Xin Zhang; Shuli Sang; Qing Guan; Haoxia Tao; Yanchun Wang; Chunjie Liu. "Identification of B-Cell Epitopes of HspA from  and Detection of Epitope Antibody Profiles in Naturally Infected Persons." Vaccines (2021).

Epitope: HP15
Chemical type: Peptide from protein
Sequence: VLVERLEEENK
Position: 10-20
Source molecule (GenBank): WP_000671927.1
Assay category: BCell
Result: Positive-Low
Host: F 6-8 weeks

Epitope: HP17
Chemical type: Peptide from protein
Sequence: RLEEENKTSSG
Position: 14-24
Source molecule (GenBank): WP_000671927.1
Assay category: BCell
Result: Positive-Low
Host: F 6-8 weeks
Reference: Min Li; Jiaojiao Liu; Renfei Lu; Yuchao Zhang; Meng Du; Man Xing; Zhenchuan Wu; Xiangyin Kong; Yufei Zhu; Xianchao Zhou; Landian Hu; Chiyu Zhang; Dongming Zhou; Xia Jin. "Longitudinal immune profiling reveals dominant epitopes mediating long-term humoral immunity in COVID-19-convalescent individuals." The Journal of allergy and clinical immunology (2022).

Epitope: SARS-CoV2 nsp5 (3CL pro) No.1478
Chemical type: Peptide from protein
Sequence: SFCYMHHMELPTGVH
Position: 3421-3435
Source molecule (GenBank): P0DTD1.1
Assay category: BCell
Result: Positive
Host:  17-66 years

Epitope: SARS-CoV2 nsp5 (3CL pro) No.1478
Chemical type: Peptide from protein
Sequence: SFCYMHHMELPTGVH
Position: 3421-3435
Source molecule (GenBank): P0DTD1.1
Assay category: BCell
Result: Positive
Host:  17-66 years

Epitope: SARS-CoV2 nsp3 No.1208
Chemical type: Peptide from protein
Sequence: LGLAAIMQLFFSYFA
Position: 2341-2355
Source molecule (GenBank): P0DTD1.1
Assay category: BCell
Result: Positive
Host:  17-66 years

Epitope: SARS-CoV2 nsp16 No.2370
Chemical type: Peptide from protein
Sequence: TAFVTNVNASSSEAF
Position: 6989-7003
Source molecule (GenBank): P0DTD1.1
Assay category: BCell
Result: Positive
Host:  17-66 years
Reference: Yuanyuan Tian; Gaiping Zhang; Hongliang Liu; Peiyang Ding; Rui Jia; Jingming Zhou; Yumei Chen; Yanhua Qi; Jinran Du; Chao Liang; Xifang Zhu; Aiping Wang. "Screening and identification of B cell epitope of the nucleocapsid protein in SARS-CoV-2 using the monoclonal antibodies." Applied microbiology and biotechnology (2022).

Epitope: N14-3-1
Chemical type: Peptide from protein
Sequence: DLDDFSKQLQQ
Position: 399-409
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Host: F

Epitope: N14-3-1
Chemical type: Peptide from protein
Sequence: DLDDFSKQLQQ
Position: 399-409
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Host: F

Epitope: N14-3-1
Chemical type: Peptide from protein
Sequence: DLDDFSKQLQQ
Position: 399-409
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Host: F

Epitope: N14-3-1
Chemical type: Peptide from protein
Sequence: DLDDFSKQLQQ
Position: 399-409
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.36
Host: F

Epitope: N14-3-1
Chemical type: Peptide from protein
Sequence: DLDDFSKQLQQ
Position: 399-409
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.46
Host: F

Epitope: N14-3-1
Chemical type: Peptide from protein
Sequence: DLDDFSKQLQQ
Position: 399-409
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Negative
Host: F

Epitope: N14-3-1
Chemical type: Peptide from protein
Sequence: DLDDFSKQLQQ
Position: 399-409
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Host: F
Reference: Fernanda F Ramos; Grasiele S V Tavares; Fernanda Ludolf; Amanda S Machado; Thaís T O Santos; Isabela A P Gonçalves; Ana C S Dias; Patrícia T Alves; Vanessa G Fraga; Raquel S Bandeira; João A Oliveira-da-Silva; Thiago A R Reis; Daniela P Lage; Vívian T Martins; Camila S Freitas; Ana T Chaves; Nathalia S Guimarães; Miguel A Chávez-Fumagalli; Unaí Tupinambás; Manoel O C Rocha; Gláucia F Cota; Ricardo T Fujiwara; Lílian L Bueno; Luiz Ricardo Goulart; Eduardo A F Coelho. "Diagnostic application of sensitive and specific phage-exposed epitopes for visceral leishmaniasis and human immunodeficiency virus coinfection." Parasitology (2021).

Epitope: Pep8
Chemical type: Peptide, no natural source
Sequence: DPTTQYS
Assay category: BCell
Result: Positive-Low

Epitope: Pep8
Chemical type: Peptide, no natural source
Sequence: DPTTQYS
Assay category: BCell
Result: Positive-Low

Epitope: Pep8
Chemical type: Peptide, no natural source
Sequence: DPTTQYS
Assay category: BCell
Result: Positive-Low

Epitope: Pep8
Chemical type: Peptide, no natural source
Sequence: DPTTQYS
Assay category: BCell
Result: Positive-Low

Epitope: Pep8
Chemical type: Peptide, no natural source
Sequence: DPTTQYS
Assay category: BCell
Result: Positive-Low

Epitope: Pep8
Chemical type: Peptide, no natural source
Sequence: DPTTQYS
Assay category: BCell
Result: Positive-Low

Epitope: Pep8
Chemical type: Peptide, no natural source
Sequence: DPTTQYS
Assay category: BCell
Result: Positive
Reference: Charline Herrscher; Sébastien Eymieux; Christophe Gaborit; Hélène Blasco; Julien Marlet; Karl Stefic; Philippe Roingeard; Leslie Grammatico-Guillon; Christophe Hourioux. "ELISA-Based Analysis Reveals an Anti-SARS-CoV-2 Protein Immune Response Profile Associated with Disease Severity." Journal of clinical medicine (2022).

Epitope: SK2
Chemical type: Peptide from protein
Sequence: FSNVTWFHAIHVSGTNGTKRF
Position: 59-79
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Negative

Epitope: SK2
Chemical type: Peptide from protein
Sequence: FSNVTWFHAIHVSGTNGTKRF
Position: 59-79
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Negative

Epitope: SK8
Chemical type: Peptide from protein
Sequence: SEFRVYSSANNCTFEYVSQPF
Position: 155-175
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Negative

Epitope: SK8
Chemical type: Peptide from protein
Sequence: SEFRVYSSANNCTFEYVSQPF
Position: 155-175
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Negative

Epitope: SK33
Chemical type: Peptide from protein
Sequence: ALQIPFAMQMAYRFNGIGVTQ
Position: 893-913
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Negative

Epitope: SK33
Chemical type: Peptide from protein
Sequence: ALQIPFAMQMAYRFNGIGVTQ
Position: 893-913
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Negative

Epitope: NC4
Chemical type: Peptide from protein
Sequence: RGGSQASSRSSSRSRNSSRNST
Position: 177-198
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Negative

Epitope: NC4
Chemical type: Peptide from protein
Sequence: RGGSQASSRSSSRSRNSSRNST
Position: 177-198
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Negative

Epitope: NC8
Chemical type: Peptide from protein
Sequence: QGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF
Position: 242-274
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Negative

Epitope: NC8
Chemical type: Peptide from protein
Sequence: QGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF
Position: 242-274
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Negative

Epitope: NS3
Chemical type: Peptide from protein
Sequence: CVDEAGSKSPIQYIDIGNYTVS
Position: 61-82
Source molecule (GenBank): P0DTC8.1
Assay category: BCell
Result: Negative

Epitope: NS3
Chemical type: Peptide from protein
Sequence: CVDEAGSKSPIQYIDIGNYTVS
Position: 61-82
Source molecule (GenBank): P0DTC8.1
Assay category: BCell
Result: Negative
Reference: Girdhari M Sharma; Andre Irsigler; Pushparani Dhanarajan; Rosalia Ayuso; Luda Bardina; Hugh A Sampson; Kenneth H Roux; Shridhar K Sathe. "Cloning and characterization of 2S albumin, Car i 1, a major allergen in pecan." Journal of agricultural and food chemistry (2011).

Epitope: Epitope 1
Chemical type: Peptide from protein
Sequence: VAALLVALLFVA
Position: 4-15
Source molecule (GenBank): AAO32314.1
Assay category: BCell
Result: Positive-Low

Epitope: Epitope 8
Chemical type: Peptide from protein
Sequence: CREQIQRQQYLN
Position: 43-54
Source molecule (GenBank): AAO32314.1
Assay category: BCell
Result: Positive-High

Epitope: Car I 1 91-102
Chemical type: Peptide from protein
Sequence: QCQCEGLRQAVR
Position: 91-102
Source molecule (GenBank): AAO32314.1
Assay category: BCell
Result: Negative

Epitope: Epitope 21
Chemical type: Peptide from protein
Sequence: QEEGIRGEEMEE
Position: 106-117
Source molecule (GenBank): AAO32314.1
Assay category: BCell
Result: Positive-High

Epitope: Car I 1 112-123
Chemical type: Peptide from protein
Sequence: GEEMEEMVQCAS
Position: 112-123
Source molecule (GenBank): AAO32314.1
Assay category: BCell
Result: Negative

Epitope: Car I 1 121-132
Chemical type: Peptide from protein
Sequence: CASDLPKECGIS
Position: 121-132
Source molecule (GenBank): AAO32314.1
Assay category: BCell
Result: Negative

Epitope: Car I 1 127-138
Chemical type: Peptide from protein
Sequence: KECGISSRSCEI
Position: 127-138
Source molecule (GenBank): AAO32314.1
Assay category: BCell
Result: Negative

Epitope: Epitope 23
Chemical type: Peptide from protein
Sequence: GISSRSCEIRRS
Position: 130-141
Source molecule (GenBank): AAO32314.1
Assay category: BCell
Result: Positive-Intermediate

Epitope: Epitope 4
Chemical type: Peptide from protein
Sequence: SRSCEIRRSWF
Position: 133-143
Source molecule (GenBank): AAO32314.1
Assay category: BCell
Result: Positive-Low
Reference: June Ereño-Orbea; Xianglei Liu; Taylor Sicard; Iga Kucharska; Wei Li; Dorota Borovsky; Hong Cui; Yang Feng; Dimiter S Dimitrov; Jean-Philippe Julien. "Structural details of monoclonal antibody m971 recognition of the membrane-proximal domain of CD22." The Journal of biological chemistry (2021).

Epitope: Epitope of m971 Fab on CD22
Chemical type: Discontinuous protein residues
Discontinuous residues: V624, S625, H626, T628, D631, N633, Q635, S636, P638, Y639, H640, S641, Q642, R645, L646, E647, Q652, H653, Y657
Source molecule (GenBank): P20273.2
Assay category: BCell
Result: Positive

Epitope: Epitope of m971 Fab on CD22
Chemical type: Discontinuous protein residues
Discontinuous residues: V624, S625, H626, T628, D631, N633, Q635, S636, P638, Y639, H640, S641, Q642, R645, L646, E647, Q652, H653, Y657
Source molecule (GenBank): P20273.2
Assay category: BCell
Result: Positive
Quantitative measurement: 30.0

Epitope: Epitope of m971 Fab on CD22
Chemical type: Discontinuous protein residues
Discontinuous residues: V624, S625, H626, T628, D631, N633, Q635, S636, P638, Y639, H640, S641, Q642, R645, L646, E647, Q652, H653, Y657
Source molecule (GenBank): P20273.2
Assay category: BCell
Result: Positive

Epitope: Epitope of m971 Fab on CD22
Chemical type: Discontinuous protein residues
Discontinuous residues: V624, S625, H626, T628, D631, N633, Q635, S636, P638, Y639, H640, S641, Q642, R645, L646, E647, Q652, H653, Y657
Source molecule (GenBank): P20273.2
Assay category: BCell
Result: Positive
Quantitative measurement: 2.41

Epitope: Epitope of m971 Fab on CD22
Chemical type: Discontinuous protein residues
Discontinuous residues: V624, S625, H626, T628, D631, N633, Q635, S636, P638, Y639, H640, S641, Q642, R645, L646, E647, Q652, H653, Y657
Source molecule (GenBank): P20273.2
Assay category: BCell
Result: Positive
Quantitative measurement: 24.8

Epitope: Epitope of m971 Fab on CD22
Chemical type: Discontinuous protein residues
Discontinuous residues: V624, S625, H626, T628, D631, N633, Q635, S636, P638, Y639, H640, S641, Q642, R645, L646, E647, Q652, H653, Y657
Source molecule (GenBank): P20273.2
Assay category: BCell
Result: Positive
Quantitative measurement: 220000.0

Epitope: Epitope of m971 Fab on CD22
Chemical type: Discontinuous protein residues
Discontinuous residues: V624, S625, H626, T628, D631, N633, Q635, S636, P638, Y639, H640, S641, Q642, R645, L646, E647, Q652, H653, Y657
Source molecule (GenBank): P20273.2
Assay category: BCell
Result: Positive
Quantitative measurement: 0.0050
Reference: Sophia Schreiber; Melanie Honz; Weeda Mamozai; Peter Kurktschiev; Matthias Schiemann; Klaus Witter; Eugene Moore; Christina Zielinski; Alessandro Sette; Ulrike Protzer; Karin Wisskirchen. "Characterization of a library of 20 HBV-specific MHC class II-restricted T cell receptors." Molecular therapy. Methods & clinical development (2021).

Epitope: S36 genotype B
Chemical type: Peptide from protein
Sequence: WTSLNFLGGTPVCLGQNS
Position: 210-227
Source molecule (GenBank): Q9QBF0.1
Assay category: TCell
Result: Positive-Low
Host:  24-63 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Engineered

Epitope: S36 genotype C
Chemical type: Peptide from protein
Sequence: WTSLNFLGGAPTCPGQNS
Position: 210-227
Source molecule (GenBank): P31868.2
Assay category: TCell
Result: Positive-Low
Host:  24-63 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Engineered
Reference: Hiroshi Terasawa; Kwong-Yok Tsang; James Gulley; Philip Arlen; Jeffrey Schlom. "Identification and characterization of a human agonist cytotoxic T-lymphocyte epitope of human prostate-specific antigen." Clinical cancer research : an official journal of the American Association for Cancer Research (2002).

Epitope: PSA-3 (Y-154)
Chemical type: Peptide, no natural source
Sequence: YISNDVCAQV
Assay category: MhcBinding
Result: Positive
Reference: Sven Kratochvil; Chen-Hsiang Shen; Ying-Cing Lin; Kai Xu; Usha Nair; Lais Da Silva Pereira; Prabhanshu Tripathi; Johan Arnold; Gwo-Yu Chuang; Eleonora Melzi; Arne Schön; Baoshan Zhang; Marlon Dillon; Brian Bonilla; Barbara J Flynn; Kathrin H Kirsch; Neville K Kisalu; Patience K Kiyuka; Tracy Liu; Li Ou; Marie Pancera; Reda Rawi; Mateo Reveiz; Kareen Seignon; Lawrence T Wang; Michael T Waring; John Warner; Yongping Yang; Joseph R Francica; Azza H Idris; Robert A Seder; Peter D Kwong; Facundo D Batista. "Vaccination in a humanized mouse model elicits highly protective PfCSP-targeting anti-malarial antibodies." Immunity (2021).

Epitope: p22
Chemical type: Peptide from protein
Sequence: NANPNVDPNANPNVD
Position: 105-119
Source molecule (GenBank): P19597.2
Assay category: BCell
Result: Positive-Low

Epitope: p22
Chemical type: Peptide from protein
Sequence: NANPNVDPNANPNVD
Position: 105-119
Source molecule (GenBank): P19597.2
Assay category: BCell
Result: Positive-Low
Epitope: Fpd1-P63
Chemical type: Peptide from protein
Sequence: GKGTFFLNGANYVCI
Position: 63-77
Source molecule (GenBank): XP_012053383.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Jenna J Guthmiller; Julianna Han; Henry A Utset; Lei Li; Linda Yu-Ling Lan; Carole Henry; Christopher T Stamper; Meagan McMahon; George O'Dell; Monica L Fernández-Quintero; Alec W Freyn; Fatima Amanat; Olivia Stovicek; Lauren Gentles; Sara T Richey; Alba Torrents de la Peña; Victoria Rosado; Haley L Dugan; Nai-Ying Zheng; Micah E Tepora; Dalia J Bitar; Siriruk Changrob; Shirin Strohmeier; Min Huang; Adolfo García-Sastre; Klaus R Liedl; Jesse D Bloom; Raffael Nachbagauer; Peter Palese; Florian Krammer; Lynda Coughlan; Andrew B Ward; Patrick C Wilson. "Broadly neutralizing antibodies target a haemagglutinin anchor epitope." Nature (2022).

Epitope: Central stalk epitope residues H38, L292, Q371
Chemical type: Discontinuous protein residues
Discontinuous residues: H54, L307, Q386
Source molecule (GenBank): ACP41953.1
Assay category: BCell
Result: Positive