Reference: Olesya Chornoguz; Alexei Gapeev; Michael C O'Neill; Suzanne Ostrand-Rosenberg. "Major histocompatibility complex class II+ invariant chain negative breast cancer cells present unique peptides that activate tumor-specific T cells from breast cancer patients." Molecular & cellular proteomics : MCP (2012).

Epitope: Peptide 47
Chemical type: Peptide from protein
Sequence: RRMRLTHCGLQEKHL
Position: 977-991
Source molecule (GenBank): Q86WI3.3
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Peptide 47
Chemical type: Peptide from protein
Sequence: RRMRLTHCGLQEKHL
Position: 977-991
Source molecule (GenBank): Q86WI3.3
Assay category: MhcLigandElution
Result: Positive

Epitope: AAGVGEFEAGISKNGQTREHALLA.
Chemical type: Peptide from protein
Sequence: AAGVGEFEAGISKNGQTREHALLA
Position: 117-140
Source molecule (GenBank): P68104.1
Assay category: MhcLigandElution
Result: Positive

Epitope: AYELKHALKGAGTNEKVLT.
Chemical type: Peptide from protein
Sequence: AYELKHALKGAGTNEKVLT
Position: 93-111
Source molecule (GenBank): P08758.2
Assay category: MhcLigandElution
Result: Positive

Epitope: DEEGLKKLMGSLDENSDQQVDF.
Chemical type: Peptide from protein
Sequence: DEEGLKKLMGSLDENSDQQVDF
Position: 52-73
Source molecule (GenBank): P29034.3
Assay category: MhcLigandElution
Result: Positive

Epitope: ELRVAPEEHPVLL.
Chemical type: Peptide from protein
Sequence: ELRVAPEEHPVLL
Position: 793-805
Source molecule (GenBank): A5A3E0.2
Assay category: MhcLigandElution
Result: Positive

Epitope: ELRVAPEEHPVLL.
Chemical type: Peptide from protein
Sequence: ELRVAPEEHPVLL
Position: 793-805
Source molecule (GenBank): A5A3E0.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: FIAIKPDGVQRGLVGEIIKRFE.
Chemical type: Peptide from protein
Sequence: FIAIKPDGVQRGLVGEIIKRFE
Position: 8-29
Source molecule (GenBank): P15531.1
Assay category: MhcLigandElution
Result: Positive

Epitope: FIKDYPVVSIEDPFDQDDWGAW.
Chemical type: Peptide from protein
Sequence: FIKDYPVVSIEDPFDQDDWGAW
Position: 283-304
Source molecule (GenBank): P06733.2
Assay category: MhcLigandElution
Result: Positive

Epitope: FKKERNTDQASMPDNTAAQKVSHLLGINV.
Chemical type: Peptide from protein
Sequence: FKKERNTDQASMPDNTAAQKVSHLLGINV
Position: 354-382
Source molecule (GenBank): P35579.4
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: FQERDPSKIKWGDAGAEYV.
Chemical type: Peptide from protein
Sequence: FQERDPSKIKWGDAGAEYV
Position: 77-95
Source molecule (GenBank): P04406.3
Assay category: MhcLigandElution
Result: Positive

Epitope: FRFGAPPHAGGGIGLERV.
Chemical type: Peptide from protein
Sequence: FRFGAPPHAGGGIGLERV
Position: 459-476
Source molecule (GenBank): P14868.2
Assay category: MhcLigandElution
Result: Positive

Epitope: IFHKYSGREGDKHTLSKKELKE.
Chemical type: Peptide from protein
Sequence: IFHKYSGREGDKHTLSKKELKE
Position: 15-36
Source molecule (GenBank): P06703.1
Assay category: MhcLigandElution
Result: Positive

Epitope: KAVEHINKTIAPALVSKK.
Chemical type: Peptide from protein
Sequence: KAVEHINKTIAPALVSKK
Position: 64-81
Source molecule (GenBank): P06733.2
Assay category: MhcLigandElution
Result: Positive

Epitope: KENLDPSNLMPPPNQT.
Chemical type: Peptide from protein
Sequence: KENLDPSNLMPPPNQT
Position: 76-91
Source molecule (GenBank): P53701.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: KIKIIAPPKRKYSV.
Chemical type: Peptide from protein
Sequence: KIKIIAPPKRKYSV
Position: 326-339
Source molecule (GenBank): Q9BYX7.1
Assay category: MhcLigandElution
Result: Positive

Epitope: KLKKTETQEKNTLPTKETIEQEKRS.
Chemical type: Peptide from protein
Sequence: KLKKTETQEKNTLPTKETIEQEKRS
Position: 17-41
Source molecule (GenBank): P63313.2
Assay category: MhcLigandElution
Result: Positive

Epitope: KLKKTETQEKNTLPTKETIEQEKRS.
Chemical type: Peptide from protein
Sequence: KLKKTETQEKNTLPTKETIEQEKRS
Position: 17-41
Source molecule (GenBank): P63313.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: KSIRDTPAKNAQKS.
Chemical type: Peptide from protein
Sequence: KSIRDTPAKNAQKS
Position: 194-207
Source molecule (GenBank): P06748.2
Assay category: MhcLigandElution
Result: Positive

Epitope: KSIRDTPAKNAQKS.
Chemical type: Peptide from protein
Sequence: KSIRDTPAKNAQKS
Position: 194-207
Source molecule (GenBank): P06748.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: KTETQEKNTLPTKETIEQEKRS.
Chemical type: Peptide from protein
Sequence: KTETQEKNTLPTKETIEQEKRS
Position: 20-41
Source molecule (GenBank): P63313.2
Assay category: MhcLigandElution
Result: Positive

Epitope: KTETQEKNTLPTKETIEQEKRS.
Chemical type: Peptide from protein
Sequence: KTETQEKNTLPTKETIEQEKRS
Position: 20-41
Source molecule (GenBank): P63313.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: KTLHPDLGTDKDKEQWKEVHKQVVESA.
Chemical type: Peptide from protein
Sequence: KTLHPDLGTDKDKEQWKEVHKQVVESA
Position: 212-238
Source molecule (GenBank): P00338.2
Assay category: MhcLigandElution
Result: Positive

Epitope: KTPKGPSSVEDIKAKMQASIEKGGSLPKVEA.
Chemical type: Peptide from protein
Sequence: KTPKGPSSVEDIKAKMQASIEKGGSLPKVEA
Position: 236-266
Source molecule (GenBank): P06748.2
Assay category: MhcLigandElution
Result: Positive

Epitope: LIKEGDIVKRTGAIVDVPVGEELL.
Chemical type: Peptide from protein
Sequence: LIKEGDIVKRTGAIVDVPVGEELL
Position: 124-147
Source molecule (GenBank): P25705.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: LKQVHPDTGISSKA.
Chemical type: Peptide from protein
Sequence: LKQVHPDTGISSKA
Position: 46-59
Source molecule (GenBank): O60814.3
Assay category: MhcLigandElution
Result: Positive

Epitope: LKVGGTSDVEVNEKKD.
Chemical type: Peptide from protein
Sequence: LKVGGTSDVEVNEKKD
Position: 404-419
Source molecule (GenBank): P10809.2
Assay category: MhcLigandElution
Result: Positive

Epitope: LLKTPAQYDASELKASMKGLGTDEDSLI.
Chemical type: Peptide from protein
Sequence: LLKTPAQYDASELKASMKGLGTDEDSLI
Position: 102-129
Source molecule (GenBank): P07355.2
Assay category: MhcLigandElution
Result: Positive

Epitope: LMGKEGVHGGLINKKC.
Chemical type: Peptide from protein
Sequence: LMGKEGVHGGLINKKC
Position: 113-128
Source molecule (GenBank): P07737.2
Assay category: MhcLigandElution
Result: Positive

Epitope: LNLKTPVPSDIDISRS.
Chemical type: Peptide from protein
Sequence: LNLKTPVPSDIDISRS
Position: 310-325
Source molecule (GenBank): P11586.4
Assay category: MhcLigandElution
Result: Positive

Epitope: LTNSPVELREPNVLI.
Chemical type: Peptide from protein
Sequence: LTNSPVELREPNVLI
Position: 117-131
Source molecule (GenBank): P01903.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: LVKVTLTSEEEARLKKSADTLWGIQKELQF.
Chemical type: Peptide from protein
Sequence: LVKVTLTSEEEARLKKSADTLWGIQKELQF
Position: 303-332
Source molecule (GenBank): P00338.2
Assay category: MhcLigandElution
Result: Positive

Epitope: LVWVPSDKSGFEPASLKEEV.
Chemical type: Peptide from protein
Sequence: LVWVPSDKSGFEPASLKEEV
Position: 31-50
Source molecule (GenBank): P35579.4
Assay category: MhcLigandElution
Result: Positive

Epitope: LVWVPSDKSGFEPASLKEEV.
Chemical type: Peptide from protein
Sequence: LVWVPSDKSGFEPASLKEEV
Position: 31-50
Source molecule (GenBank): P35579.4
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: MFQYNSTHGKFHGTVKA.
Chemical type: Peptide from protein
Sequence: MFQYNSTHGKFHGTVKA
Assay category: MhcLigandElution
Result: Positive

Epitope: MLMPKKNRIAIYEL.
Chemical type: Peptide from protein
Sequence: MLMPKKNRIAIYEL
Position: 1-14
Source molecule (GenBank): P46783.1
Assay category: MhcLigandElution
Result: Positive

Epitope: NFINNPLAQADWAAKKLV.
Chemical type: Peptide from protein
Sequence: NFINNPLAQADWAAKKLV
Position: 15-32
Source molecule (GenBank): P35579.4
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: NVAGDSKNDPPMEAAGFTAQV.
Chemical type: Peptide from protein
Sequence: NVAGDSKNDPPMEAAGFTAQV
Position: 324-344
Source molecule (GenBank): P68104.1
Assay category: MhcLigandElution
Result: Positive

Epitope: NWDDMEKIWHHTFY.
Chemical type: Peptide from protein
Sequence: NWDDMEKIWHHTFY
Position: 778-791
Source molecule (GenBank): A5A3E0.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: NYGFSGVMLRGSGIQWDLRKTQPY.
Chemical type: Peptide from protein
Sequence: NYGFSGVMLRGSGIQWDLRKTQPY
Position: 285-308
Source molecule (GenBank): O75306.2
Assay category: MhcLigandElution
Result: Positive

Epitope: PTIVEEVQDGKVISSRE.
Chemical type: Peptide from protein
Sequence: PTIVEEVQDGKVISSRE
Assay category: MhcLigandElution
Result: Positive

Epitope: RHQGVMVGMGQKDSYVGDEAQSKR.
Chemical type: Peptide from protein
Sequence: RHQGVMVGMGQKDSYVGDEAQSKR
Position: 39-62
Source molecule (GenBank): P60709.1
Assay category: MhcLigandElution
Result: Positive

Epitope: RIGVITNRERHPGSFDVVHVKDANGNSFA.
Chemical type: Peptide from protein
Sequence: RIGVITNRERHPGSFDVVHVKDANGNSFA
Position: 191-219
Source molecule (GenBank): P62701.2
Assay category: MhcLigandElution
Result: Positive

Epitope: RVFDKEGNGTVMGAEIRHVLV.
Chemical type: Peptide from protein
Sequence: RVFDKEGNGTVMGAEIRHVLV
Position: 94-114
Source molecule (GenBank): P60660.2
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: TALAPSTMKIKIIAPPERKYS.
Chemical type: Peptide from protein
Sequence: TALAPSTMKIKIIAPPERKYS
Position: 318-338
Source molecule (GenBank): P60709.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: TRGAARAAVSPAGGARSAPARATAAPRRAATHRPAP.
Chemical type: Peptide from protein
Sequence: TRGAARAAVSPAGGARSAPARATAAPRRAATHRPAP
Assay category: MhcLigandElution
Result: Positive

Epitope: TYRQLLEGEESRM.
Chemical type: Peptide from protein
Sequence: TYRQLLEGEESRM
Position: 465-477
Source molecule (GenBank): Q7Z794.3
Assay category: MhcLigandElution
Result: Positive

Epitope: YKQPGGITNQFLLDSLKHRE.
Chemical type: Peptide from protein
Sequence: YKQPGGITNQFLLDSLKHRE
Position: 353-372
Source molecule (GenBank): Q495W5.1
Assay category: MhcLigandElution
Result: Positive

Epitope: YLKSHHGEHERPEFI.
Chemical type: Peptide from protein
Sequence: YLKSHHGEHERPEFI
Position: 58-72
Source molecule (GenBank): P12074.4
Assay category: MhcLigandElution
Result: Positive

Epitope: YLKSHHGEHERPEFI.
Chemical type: Peptide from protein
Sequence: YLKSHHGEHERPEFI
Position: 58-72
Source molecule (GenBank): P12074.4
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 63 413

Epitope: YLLKNKAQFEDRN.
Chemical type: Peptide from protein
Sequence: YLLKNKAQFEDRN
Position: 87-99
Source molecule (GenBank): Q9C005.1
Assay category: MhcLigandElution
Result: Positive