Reference: Charles T Spencer; Srdjan M Dragovic; Stephanie B Conant; Jennifer J Gray; Mu Zheng; Parimal Samir; Xinnan Niu; Magdalini Moutaftsi; Luc Van Kaer; Alessandro Sette; Andrew J Link; Sebastian Joyce. "Sculpting MHC class II-restricted self and non-self peptidome by the class I Ag-processing machinery and its impact on Th-cell responses." European journal of immunology (2013).

Epitope: Peptide 2
Chemical type: Peptide from protein
Sequence: TAGQEKFGGLRD
Position: 66-77
Source molecule (GenBank): NP_033054.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 3
Chemical type: Peptide from protein
Sequence: RSTDRDWETASAASSLASV
Position: 1454-1472
Source molecule (GenBank): XP_129375
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 13
Chemical type: Peptide from protein
Sequence: GPVIHQEMIGGFRNAKEAD
Position: 1122-1140
Source molecule (GenBank): NP_033908
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 18
Chemical type: Peptide from protein
Sequence: RQNGVLNSWTDQDSKD
Position: 179-194
Source molecule (GenBank): XP_132633
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 19
Chemical type: Peptide from protein
Sequence: PPASVVVGPVVVPRGLSDHRTYHD
Position: 276-299
Source molecule (GenBank): NP_038493.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 21
Chemical type: Peptide from protein
Sequence: PHKTPASPVVHIRGLID
Position: 92-108
Source molecule (GenBank): NP_796275.3
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 23
Chemical type: Peptide from protein
Sequence: EVQLVESGGGLVKPGG
Position: 1-16
Source molecule (GenBank): 2ZUQ_C
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 27
Chemical type: Peptide from protein
Sequence: WTNNGKTELNYKNTEPVLD
Position: 293-311
Source molecule (GenBank): XP_489702
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 45
Chemical type: Peptide from protein
Sequence: LVGIDYSLLKD
Position: 212-222
Source molecule (GenBank): NP_035255
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 46
Chemical type: Peptide from protein
Sequence: KSRILVIKAAEDSALQYMN
Position: 159-177
Source molecule (GenBank): NP_852075
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 47
Chemical type: Peptide from protein
Sequence: PENTEEAEFHVD
Position: 218-229
Source molecule (GenBank): NP_033269
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 48
Chemical type: Peptide from protein
Sequence: GHTEENYKDTAPVLDS
Position: 411-426
Source molecule (GenBank): NP_997616
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 54
Chemical type: Peptide from protein
Sequence: PALIRETQEKRFKD
Position: 16-29
Source molecule (GenBank): NP_035449.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 60
Chemical type: Peptide from protein
Sequence: DPDVQISWFVNNVEVHTAQTQTHRED
Position: 182-207
Source molecule (GenBank): XP_489702
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 71
Chemical type: Peptide from protein
Sequence: PDVQISWFVNNVEVHTAQTQTHRE
Position: 183-206
Source molecule (GenBank): XP_489702
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 85
Chemical type: Peptide from protein
Sequence: PQGGLQNIAVVKHNLGVL
Position: 83-100
Source molecule (GenBank): NP_034508.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 87
Chemical type: Peptide from protein
Sequence: PPASVVVGPVVVPRGL
Position: 276-291
Source molecule (GenBank): NP_038493.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 100
Chemical type: Peptide from protein
Sequence: GFGDLKTPAGLQVLND
Position: 2-17
Source molecule (GenBank): NP_061266.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 142
Chemical type: Peptide from protein
Sequence: RSSSTVYMVLNSLTSED
Position: 43-59
Source molecule (GenBank): CBJ14505.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 155
Chemical type: Peptide from protein
Sequence: DSKSSVYLQMNNLRAED
Position: 95-111
Source molecule (GenBank): XP_484183
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 180
Chemical type: Peptide from protein
Sequence: GQVLQFHLSNLEYACGSSL
Position: 539-557
Source molecule (GenBank): NP_758466
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 181
Chemical type: Peptide from protein
Sequence: GKNVNAGGHKLGLGLEFQA
Position: 265-283
Source molecule (GenBank): NP_035824
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 185
Chemical type: Peptide from protein
Sequence: ASHSSFFFYKSGVYDD
Position: 263-278
Source molecule (GenBank): NP_067256
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 200
Chemical type: Peptide from protein
Sequence: AEAQAEPKDGSPDAPATPEKE
Position: 1342-1362
Source molecule (GenBank): XP_006495809.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 217
Chemical type: Peptide from protein
Sequence: NMCILLDHLDGENYMMRN
Position: 318-335
Source molecule (GenBank): NP_666283
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 219
Chemical type: Peptide from protein
Sequence: LAQVSLRHARLHQASSEPGRVVGG
Position: 48-71
Source molecule (GenBank): XP_488707
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 223
Chemical type: Peptide from protein
Sequence: VLDLDLFRVD
Position: 2-11
Source molecule (GenBank): NP_035449.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 224
Chemical type: Peptide from protein
Sequence: RGQETVGTLDLGGASTQITFLPQ
Position: 214-236
Source molecule (GenBank): NP_031673
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 226
Chemical type: Peptide from protein
Sequence: PAMRLILEQMQKD
Position: 502-514
Source molecule (GenBank): NP_058017
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 283
Chemical type: Peptide from protein
Sequence: ERISDFEKKANGHSSTEKQTA
Position: 263-283
Source molecule (GenBank): NP_862896.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 295
Chemical type: Peptide from protein
Sequence: VQETDTSQKDQSPASHEIATNLGD
Position: 27-50
Source molecule (GenBank): NP_033269
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 307
Chemical type: Peptide from protein
Sequence: RDRMVERIQFVCSLCKYRTFY
Position: 380-400
Source molecule (GenBank): NP_059504
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 311
Chemical type: Peptide from protein
Sequence: IEKVNLTKWKAITNKVRRWE
Position: 224-243
Source molecule (GenBank): NP_083528
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 312
Chemical type: Peptide from protein
Sequence: NTALWTLSLLLGAVKAL
Position: 129-145
Source molecule (GenBank): NP_081227
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 320
Chemical type: Peptide from protein
Sequence: IYFHHQTLGQTGSFAVISSNLDMSEANCK
Position: 2944-2972
Source molecule (GenBank): NP_082470.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 323
Chemical type: Peptide from protein
Sequence: PALKTLQDDFLEFAKDKNFQVLNFVET
Position: 534-560
Source molecule (GenBank): NP_796285
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 336
Chemical type: Peptide from protein
Sequence: TAILDREIWAETRLV
Position: 2225-2239
Source molecule (GenBank): XP_194371
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 341
Chemical type: Peptide from protein
Sequence: ELLLSAEAAKAAQRADLQNHLD
Position: 649-670
Source molecule (GenBank): NP_001001932.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 345
Chemical type: Peptide from protein
Sequence: LQSLEKEILSEVCSSQGCNI
Position: 1192-1211
Source molecule (GenBank): NP_081039.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 349
Chemical type: Peptide from protein
Sequence: TGAPQGPPGAAPGPPPSGPI
Position: 614-633
Source molecule (GenBank): NP_083641
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 354
Chemical type: Peptide from protein
Sequence: EFYAMLAKTGVHYYRGNNIELGTA
Position: 61-84
Source molecule (GenBank): XP_487301
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 368
Chemical type: Peptide from protein
Sequence: MPGETLASRVAASQLTCLGCLELIAKSRQE
Position: 946-975
Source molecule (GenBank): NP_631883
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 374
Chemical type: Peptide from protein
Sequence: LNMMSWRVLPLSLLNMRSWRVLPLSLLSTMSCRVL
Position: 301-335
Source molecule (GenBank): XP_488305
Assay category: MhcLigandElution
Result: Positive

Epitope: Peptide 375
Chemical type: Peptide from protein
Sequence: PLEAQAKSRESFPERDD
Position: 34-50
Source molecule (GenBank): NP_033906
Assay category: MhcLigandElution
Result: Positive

Epitope: VACV Peptide 1
Chemical type: Peptide from protein
Sequence: QLVFNSISARALKAY
Position: 7-21
Source molecule (GenBank): AAO89349.1
Assay category: TCell
Result: Positive
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo