Reference: Shira Weingarten-Gabbay; Da-Yuan Chen; Siranush Sarkizova; Hannah B Taylor; Matteo Gentili; Gabrielle M Hernandez; Leah R Pearlman; Matthew R Bauer; Charles M Rice; Karl R Clauser; Nir Hacohen; Steven A Carr; Jennifer G Abelin; Mohsan Saeed; Pardis C Sabeti. "The HLA-II immunopeptidome of SARS-CoV-2." Cell reports (2024).

Epitope: VPLHGTILTRPLLESELVIG
Chemical type: Peptide from protein
Sequence: VPLHGTILTRPLLESELVIG
Position: 122-141
Source molecule (GenBank): P0DTC5.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 413 422 360 363 20 893 103 1064 800 524

Epitope: LRGHLRIAGHHLGRCD
Chemical type: Peptide from protein
Sequence: LRGHLRIAGHHLGRCD
Position: 145-160
Source molecule (GenBank): P0DTC5.1
Assay category: MhcLigandElution
Result: Positive

Epitope: RGHLRIAGHHLGRCDIKD
Chemical type: Peptide from protein
Sequence: RGHLRIAGHHLGRCDIKD
Position: 146-163
Source molecule (GenBank): P0DTC5.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 413 422 360 363 20 893 103 1064 800 524

Epitope: GHLRIAGHHLGR
Chemical type: Peptide from protein
Sequence: GHLRIAGHHLGR
Position: 147-158
Source molecule (GenBank): P0DTC5.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 413 422 360 363 20 893 103 1064 800 524

Epitope: RCDIKDLPKEITVA
Chemical type: Peptide from protein
Sequence: RCDIKDLPKEITVA
Position: 158-171
Source molecule (GenBank): P0DTC5.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 413 422 360 363 20 893 103 1064 800 524

Epitope: GNGGDAALALLLLDRLNQLESK
Chemical type: Peptide from protein
Sequence: GNGGDAALALLLLDRLNQLESK
Position: 212-233
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 413 422 360 363 20 893 103 1064 800 524

Epitope: DAALALLLLDRLNQLESK
Chemical type: Peptide from protein
Sequence: DAALALLLLDRLNQLESK
Position: 216-233
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 413 422 360 363 20 893 103 1064 800 524

Epitope: ILLNKHIDAYK
Chemical type: Peptide from protein
Sequence: ILLNKHIDAYK
Position: 351-361
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 413 422 360 363 20 893 103 1064 800 524

Epitope: QRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQ
Chemical type: Peptide from protein
Sequence: QRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQ
Position: 384-418
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 413 422 360 363 20 893 103 1064 800 524

Epitope: QRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQ
Chemical type: Peptide from protein
Sequence: QRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQ
Position: 384-418
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: TSRTLSYYKLGASQRVAGDSG
Chemical type: Peptide from protein
Sequence: TSRTLSYYKLGASQRVAGDSG
Position: 172-192
Source molecule (GenBank): P0DTC5.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: SRTLSYYKLGASQRVAG
Chemical type: Peptide from protein
Sequence: SRTLSYYKLGASQRVAG
Position: 173-189
Source molecule (GenBank): P0DTC5.1
Assay category: MhcLigandElution
Result: Positive

Epitope: RTLSYYKLGASQRVA
Chemical type: Peptide from protein
Sequence: RTLSYYKLGASQRVA
Position: 174-188
Source molecule (GenBank): P0DTC5.1
Assay category: MhcLigandElution
Result: Positive

Epitope: TPKDHIGTRNPANNAAIVLQLPQG
Chemical type: Peptide from protein
Sequence: TPKDHIGTRNPANNAAIVLQLPQG
Position: 141-164
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: HIGTRNPANNAAIVLQLPQG
Chemical type: Peptide from protein
Sequence: HIGTRNPANNAAIVLQLPQG
Position: 145-164
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: RTATKAYNVTQAFGRRGPEQ
Chemical type: Peptide from protein
Sequence: RTATKAYNVTQAFGRRGPEQ
Position: 262-281
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: RTATKAYNVTQAFGRRGPEQTQGN
Chemical type: Peptide from protein
Sequence: RTATKAYNVTQAFGRRGPEQTQGN
Position: 262-285
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: RTATKAYNVTQAFGRRGPEQTQGNF
Chemical type: Peptide from protein
Sequence: RTATKAYNVTQAFGRRGPEQTQGNF
Position: 262-286
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: TATKAYNVTQAFGRR
Chemical type: Peptide from protein
Sequence: TATKAYNVTQAFGRR
Position: 263-277
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: TATKAYNVTQAFGRRGPEQTQGNFGDQELIR
Chemical type: Peptide from protein
Sequence: TATKAYNVTQAFGRRGPEQTQGNFGDQELIR
Position: 263-293
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: ATKAYNVTQAFGRRGPEQTQ
Chemical type: Peptide from protein
Sequence: ATKAYNVTQAFGRRGPEQTQ
Position: 264-283
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: ATKAYNVTQAFGRRGPEQTQGNFG
Chemical type: Peptide from protein
Sequence: ATKAYNVTQAFGRRGPEQTQGNFG
Position: 264-287
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: TKAYNVTQAFGRRGPE
Chemical type: Peptide from protein
Sequence: TKAYNVTQAFGRRGPE
Position: 265-280
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: AYNVTQAFGRRGP
Chemical type: Peptide from protein
Sequence: AYNVTQAFGRRGP
Position: 267-279
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: MEVTPSGTWLTYTGAIKLDDKDPNF
Chemical type: Peptide from protein
Sequence: MEVTPSGTWLTYTGAIKLDDKDPNF
Position: 322-346
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: EVTPSGTWLTYTGAIKLDDKDPNFKDQ
Chemical type: Peptide from protein
Sequence: EVTPSGTWLTYTGAIKLDDKDPNFKDQ
Position: 323-349
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: KADETQALPQRQKKQQTVTLLPAADLDDFSKQLQ
Chemical type: Peptide from protein
Sequence: KADETQALPQRQKKQQTVTLLPAADLDDFSKQLQ
Position: 375-408
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: ADETQALPQRQKKQQTVTLLPAADLDDFSKQL
Chemical type: Peptide from protein
Sequence: ADETQALPQRQKKQQTVTLLPAADLDDFSKQL
Position: 376-407
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: QALPQRQKKQQTVTLLPAADLDDFS
Chemical type: Peptide from protein
Sequence: QALPQRQKKQQTVTLLPAADLDDFS
Position: 380-404
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: ALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSS
Chemical type: Peptide from protein
Sequence: ALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSS
Position: 381-413
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: ALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSA
Chemical type: Peptide from protein
Sequence: ALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSA
Position: 381-414
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: RQKKQQTVTLLPAADLDDFSKQ
Chemical type: Peptide from protein
Sequence: RQKKQQTVTLLPAADLDDFSKQ
Position: 385-406
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: QKKQQTVTLLPAAD
Chemical type: Peptide from protein
Sequence: QKKQQTVTLLPAAD
Position: 386-399
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive

Epitope: LLPAADLDDFSKQLQ
Chemical type: Peptide from protein
Sequence: LLPAADLDDFSKQLQ
Position: 394-408
Source molecule (GenBank): P0DTC9.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: REFVFKNIDGYFKIYSKHTPIN
Chemical type: Peptide from protein
Sequence: REFVFKNIDGYFKIYSKHTPIN
Position: 190-211
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: KLPDDFTGCVIAWNSNNLDSKVG
Chemical type: Peptide from protein
Sequence: KLPDDFTGCVIAWNSNNLDSKVG
Position: 424-446
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: DFTGCVIAWNSNNLDSK
Chemical type: Peptide from protein
Sequence: DFTGCVIAWNSNNLDSK
Position: 428-444
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: GCVIAWNSNNLDSK
Chemical type: Peptide from protein
Sequence: GCVIAWNSNNLDSK
Position: 431-444
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: EIYQAGSTPCNGVEG
Chemical type: Peptide from protein
Sequence: EIYQAGSTPCNGVEG
Position: 471-485
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: SVASQSIIAYTMSLGAEN
Chemical type: Peptide from protein
Sequence: SVASQSIIAYTMSLGAEN
Position: 686-703
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: ASQSIIAYTMSLG
Chemical type: Peptide from protein
Sequence: ASQSIIAYTMSLG
Position: 688-700
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: SNLLLQYGSFCTQ
Chemical type: Peptide from protein
Sequence: SNLLLQYGSFCTQ
Position: 750-762
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: LTDEMIAQYTSALLAGTIT
Chemical type: Peptide from protein
Sequence: LTDEMIAQYTSALLAGTIT
Position: 865-883
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: TDEMIAQYTSALLA
Chemical type: Peptide from protein
Sequence: TDEMIAQYTSALLA
Position: 866-879
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: DEMIAQYTSALLAG
Chemical type: Peptide from protein
Sequence: DEMIAQYTSALLAG
Position: 867-880
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: EMIAQYTSALLAGTIT
Chemical type: Peptide from protein
Sequence: EMIAQYTSALLAGTIT
Position: 868-883
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: IPFAMQMAYRFN
Chemical type: Peptide from protein
Sequence: IPFAMQMAYRFN
Position: 896-907
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 436 368 96 646

Epitope: TQQLIRAAEIRAS
Chemical type: Peptide from protein
Sequence: TQQLIRAAEIRAS
Position: 1009-1021
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: TQQLIRAAEIRASANL
Chemical type: Peptide from protein
Sequence: TQQLIRAAEIRASANL
Position: 1009-1024
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive

Epitope: QQLIRAAEIRASAN
Chemical type: Peptide from protein
Sequence: QQLIRAAEIRASAN
Position: 1010-1023
Source molecule (GenBank): P0DTC2.1
Assay category: MhcLigandElution
Result: Positive