LiteFold/IEDB huggingface dataset:
Reference: M U Mondelli; A Cerino; A Lisa; S Brambilla; L Segagni; A Cividini; M Bissolati; G Missale; G Bellati; A Meola; B Bruniercole; A Nicosia; G Galfrè; E Silini. "Antibody responses to hepatitis C virus hypervariable region 1: evidence for cross-reactivity and immune-mediated sequence variation." Hepatology (Baltimore, Md.) (1999).

Epitope: P5
Chemical type: Peptide from protein
Sequence: SAAHTAFGIANLFRMG
Assay category: BCell
Result: Negative

Epitope: P5
Chemical type: Peptide from protein
Sequence: SAAHTAFGIANLFRMG
Assay category: BCell
Result: Positive

Epitope: P5
Chemical type: Peptide from protein
Sequence: SAAHTAFGIANLFRMG
Assay category: BCell
Result: Negative

Epitope: P5
Chemical type: Peptide from protein
Sequence: SAAHTAFGIANLFRMG
Assay category: BCell
Result: Positive

Epitope: P5
Chemical type: Peptide from protein
Sequence: SAAHTAFGIANLFRMG
Assay category: BCell
Result: Negative

Epitope: P5
Chemical type: Peptide from protein
Sequence: SAAHTAFGIANLFRMG
Assay category: BCell
Result: Positive

Epitope: P5
Chemical type: Peptide from protein
Sequence: SAAHTAFGIANLFRMG
Assay category: BCell
Result: Positive

Epitope: P5
Chemical type: Peptide from protein
Sequence: SAAHTAFGIANLFRMG
Assay category: BCell
Result: Negative
Reference: O Minenkova; N Gargano; A De Tomassi; F Bellintani; A Pucci; P Fortugno; E Fuscaldi; A Pessi; M Rapicetta; M Miceli; P Iudicone; R Cortese; F Felici; P Monaci. "ADAM-HCV, a new-concept diagnostic assay for antibodies to hepatitis C virus in serum." European journal of biochemistry  / FEBS. (2001).

Epitope: P40.18
Chemical type: Peptide, no natural source
Sequence: YSREQLNKLFGIEVM
Assay category: BCell
Result: Positive

Epitope: P40.3
Chemical type: Peptide, no natural source
Sequence: KSREQLSKLHGVDTS
Assay category: BCell
Result: Positive

Epitope: P141.2
Chemical type: Peptide, no natural source
Sequence: MWRTWLMKTHGIESW
Assay category: BCell
Result: Positive

Epitope: P177.13
Chemical type: Peptide, no natural source
Sequence: MSRTFLMKAHGIESW
Assay category: BCell
Result: Positive

Epitope: P177.22
Chemical type: Peptide, no natural source
Sequence: MSRTWLMKAHGIESW
Assay category: BCell
Result: Positive

Epitope: mB11.17
Chemical type: Peptide, no natural source
Sequence: AEGEFRELLYEAFDDMEGDPAK
Assay category: BCell
Result: Positive

Epitope: mB11.17
Chemical type: Peptide, no natural source
Sequence: AEGEFRELLYEAFDDMEGDPAK
Assay category: BCell
Result: Positive

Epitope: m1929C3.4
Chemical type: Peptide, no natural source
Sequence: AEGEFATAPPSHYSWDPAK
Assay category: BCell
Result: Positive

Epitope: m1929C3.4
Chemical type: Peptide, no natural source
Sequence: AEGEFATAPPSHYSWDPAK
Assay category: BCell
Result: Positive
Reference: B Qiu; M Brunner; G Zhang; L Sigal; S Stein. "Selection of continuous epitope sequences and their incorporation into poly(ethylene glycol)-peptide conjugates for use in serodiagnostic immunoassays: application to Lyme disease." Biopolymers. (2000).

Epitope: OspC2
Chemical type: Peptide from protein
Sequence: EIAAKAIGKKIHQNNG
Position: 71-86
Source molecule (GenBank): Q07337.1
Assay category: BCell
Result: Positive

Epitope: OspC3
Chemical type: Peptide from protein
Sequence: ISTLIKQKLDGLKNE
Position: 104-118
Source molecule (GenBank): Q07337.1
Assay category: BCell
Result: Positive

Epitope: 11
Chemical type: Peptide from protein
Sequence: DKSFNESALN
Position: 41-50
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 22
Chemical type: Peptide from protein
Sequence: SDLIWLIGYR
Position: 85-94
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 24
Chemical type: Peptide from protein
Sequence: YRFSDVAKVA
Position: 93-102
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 35
Chemical type: Peptide from protein
Sequence: GAFLTGYIAA
Position: 137-146
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 38
Chemical type: Peptide from protein
Sequence: SKTGKIGFLG
Position: 149-158
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 46
Chemical type: Peptide from protein
Sequence: KDIKISTQYI
Position: 181-190
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 56
Chemical type: Peptide from protein
Sequence: GGIGAIEVAK
Position: 221-230
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 59
Chemical type: Peptide from protein
Sequence: GSGHYIIGVD
Position: 233-242
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 66
Chemical type: Peptide from protein
Sequence: VGRALNIFTS
Position: 261-270
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 72
Chemical type: Peptide from protein
Sequence: NYGLKEGVVG
Position: 285-294
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative

Epitope: 82
Chemical type: Peptide from protein
Sequence: PSNKESYEKF
Position: 325-334
Source molecule (GenBank): Q45010.1
Assay category: BCell
Result: Negative
Reference: H I Wergeland; L R Haaheim; O B Natås; F Wesenberg; P Oeding. "Antibodies to staphylococcal peptidoglycan and its peptide epitopes, teichoic acid, and lipoteichoic acid in sera from blood donors and patients with staphylococcal infections." Journal of clinical microbiology (1989).

Epitope: (Gly)5
Chemical type: Peptide from protein
Sequence: GGGGG
Assay category: BCell
Result: Positive
Reference: C Li; D Candotti; J P Allain. "Production and characterization of monoclonal antibodies specific for a conserved epitope within hepatitis C virus hypervariable region 1." Journal of virology (2001).

Epitope: DH1
Chemical type: Peptide from protein
Sequence: CGGVAGLFKMGSQQKL
Assay category: BCell
Result: Positive
Host:  8 weeks

Epitope: FR2
Chemical type: Peptide from protein
Sequence: CIVNRRTSFFNLGPSQR
Assay category: BCell
Result: Positive
Host:  8 weeks
Reference: L A Pereboeva; A V Pereboev; G E Morris. "Identification of antigenic sites on three hepatitis C virus proteins using phage-displayed peptide libraries." Journal of medical virology (1998).

Epitope: 2
Chemical type: Peptide, no natural source
Sequence: HGRYFHVPGYPWGSA
Assay category: BCell
Result: Positive

Epitope: 3
Chemical type: Peptide, no natural source
Sequence: PSDRLFPGLSDFGCS
Assay category: BCell
Result: Positive

Epitope: 7
Chemical type: Peptide, no natural source
Sequence: DLSVLGSRRPFFVWA
Assay category: BCell
Result: Positive

Epitope: 13
Chemical type: Peptide, no natural source
Sequence: SPVTLTESVFPFLR
Assay category: BCell
Result: Positive
Reference: L Souan; Y Tal; Y Felling; I R Cohen; A Taraboulos; F Mor. "Modulation of proteinase-K resistant prion protein by prion peptide immunization." European journal of immunology (2001).

Epitope: p11-30
Chemical type: Peptide from protein
Sequence: LFVTMWTDVGLCKKRPKPGG
Position: 11-30
Source molecule (GenBank): AAA39998.1
Assay category: TCell
Result: Negative
Host: F 8 weeks
Cell type: T cell
Tissue: lymph node
Culture conditions: Cell Line / Clone

Epitope: p121-140
Chemical type: Peptide from protein
Sequence: VGGLGGYMLGSAMSRPMIHF
Position: 121-140
Source molecule (GenBank): P04925.2
Assay category: TCell
Result: Negative
Host: F 8 weeks
Cell type: T cell
Tissue: lymph node
Culture conditions: Cell Line / Clone

Epitope: p191-210
Chemical type: Peptide from protein
Sequence: TTKGENFTETDVKMMERVVE
Position: 191-210
Source molecule (GenBank): P04925.2
Assay category: TCell
Result: Negative
Host: F 8 weeks
Cell type: T cell
Tissue: lymph node
Culture conditions: Cell Line / Clone
Reference: F Bartoli; M Nuzzo; L Urbanelli; F Bellintani; C Prezzi; R Cortese; P Monaci. "DNA-based selection and screening of peptide ligands." Nature biotechnology (1998).

Epitope: P1905
Chemical type: Peptide, no natural source
Sequence: KTRTHTNAT
Assay category: BCell
Result: Positive

Epitope: P1905
Chemical type: Peptide, no natural source
Sequence: KTRTHTNAT
Assay category: BCell
Result: Positive

Epitope: P1905
Chemical type: Peptide, no natural source
Sequence: KTRTHTNAT
Assay category: BCell
Result: Positive

Epitope: P1905
Chemical type: Peptide, no natural source
Sequence: KTRTHTNAT
Assay category: BCell
Result: Positive

Epitope: P1901c
Chemical type: Peptide, no natural source
Sequence: GKFPGSKPS
Assay category: BCell
Result: Positive

Epitope: P1967
Chemical type: Peptide, no natural source
Sequence: PTHYFGSPM
Assay category: BCell
Result: Positive

Epitope: P3202
Chemical type: Peptide, no natural source
Sequence: SAFSPTHYK
Assay category: BCell
Result: Positive
Reference: Q Sun; G M Smith; C Zahradka; M J McGavin. "Identification of D motif epitopes in Staphylococcus aureus fibronectin-binding protein for the production of antibody inhibitors of fibronectin binding." Infection and immunity (1997).

Epitope: D1<sub>29-38</sub>
Chemical type: Peptide from protein
Sequence: DFDSVPQIHG
Position: 774-783
Source molecule (GenBank): A32192
Assay category: BCell
Result: Positive
Host: M

Epitope: D1<sub>29-38</sub>
Chemical type: Peptide from protein
Sequence: DFDSVPQIHG
Position: 774-783
Source molecule (GenBank): A32192
Assay category: BCell
Result: Negative
Host: M
Reference: S Zucchelli; R Roccasecca; A Meola; B B Ercole; R Tafi; J Dubuisson; G Galfré; R Cortese; A Nicosia. "Mimotopes of the hepatitis C virus hypervariable region 1, but not the natural sequences, induce cross-reactive antibody response by genetic immunization." Hepatology (Baltimore, Md.) (2001).

Epitope: F78
Chemical type: Peptide, no natural source
Sequence: QTHTTGGQAGHQAHSLTGLFSPGAAKQN
Assay category: BCell
Result: Positive

Epitope: F78
Chemical type: Peptide, no natural source
Sequence: QTHTTGGQAGHQAHSLTGLFSPGAAKQN
Assay category: BCell
Result: Positive
Host: F

Epitope: F78
Chemical type: Peptide, no natural source
Sequence: QTHTTGGQAGHQAHSLTGLFSPGAAKQN
Assay category: BCell
Result: Positive

Epitope: F78
Chemical type: Peptide, no natural source
Sequence: QTHTTGGQAGHQAHSLTGLFSPGAAKQN
Assay category: BCell
Result: Positive

Epitope: G31
Chemical type: Peptide, no natural source
Sequence: TTHTVGGSVARQVHSLTGLFSPGPQQK
Assay category: BCell
Result: Positive
Reference: Dirk Meyer-Olson; Naglaa H Shoukry; Kristen W Brady; Helen Kim; Douglas P Olson; Kelly Hartman; Ayumi K Shintani; Christopher M Walker; Spyros A Kalams. "Limited T cell receptor diversity of HCV-specific T cell responses is associated with CTL escape." The Journal of experimental medicine (2004).

Epitope: NS3 1446-1454
Chemical type: Peptide from protein
Sequence: GDFDSVIDC
Position: 1446-1454
Source molecule (GenBank): BAB18806.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: liver
Culture conditions: Cell Line / Clone
Reference: John Wilkinson; Alethea Cope; Jas Gill; Dimitra Bourboulia; Peter Hayes; Nesrina Imami; Toru Kubo; Anne Marcelin; Vincent Calvez; Robin Weiss; Brian Gazzard; Chris Boshoff; Frances Gotch. "Identification of Kaposi's sarcoma-associated herpesvirus (KSHV)-specific cytotoxic T-lymphocyte epitopes and evaluation of reconstitution of KSHV-specific responses in human immunodeficiency virus type 1-Infected patients receiving highly active antiretroviral therapy." Journal of virology (2002).

Epitope: K8.1  P2
Chemical type: Peptide from protein
Sequence: PVALLILCLCLVACH
Position: 11-25
Source molecule (GenBank): ABD28902.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: K8.1  P11
Chemical type: Peptide from protein
Sequence: DAIDESGSGEEERPV
Position: 101-115
Source molecule (GenBank): ABD28902.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: K8.1  P19
Chemical type: Peptide from protein
Sequence: TTRGRDAHYNAEIRT
Position: 181-195
Source molecule (GenBank): AAC59622.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: T Kamradt; B Lengl-Janssen; A F Strauss; G Bansal; A C Steere. "Dominant recognition of a Borrelia burgdorferi outer surface protein A peptide by T helper cells in patients with treatment-resistant Lyme arthritis." Infection and immunity (1996).

Epitope: Peptide 34-53
Chemical type: Peptide from protein
Sequence: LPGEMNVLVSKEKNKDGKYD
Position: 34-53
Source molecule (GenBank): P14013.1
Assay category: TCell
Result: Positive
Host:  30-52 years
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Peptide 64-83
Chemical type: Peptide from protein
Sequence: KGTSDKNNGSGVLEGVKADK
Position: 64-83
Source molecule (GenBank): P14013.1
Assay category: TCell
Result: Positive
Host:  30-52 years
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Peptide 94-113
Chemical type: Peptide from protein
Sequence: LGQTTLEVFKEDGKTLVSKK
Position: 94-113
Source molecule (GenBank): P14013.1
Assay category: TCell
Result: Positive
Host:  30-52 years
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Peptide 114-133
Chemical type: Peptide from protein
Sequence: VTSKDKSSTEEKFNEKGEVS
Position: 114-133
Source molecule (GenBank): P14013.1
Assay category: TCell
Result: Positive
Host:  30-52 years
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: Peptide 224-243
Chemical type: Peptide from protein
Sequence: TITVNSKKTKDLVFTKENTI
Position: 224-243
Source molecule (GenBank): P14013.1
Assay category: TCell
Result: Positive
Host:  30-52 years
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: H I Wergeland; C Endresen. "Antibodies to various bacterial cell wall peptidoglycans in human and rabbit sera." Journal of clinical microbiology (1987).

Epitope: (Gly)5
Chemical type: Peptide from protein
Sequence: GGGGG
Assay category: BCell
Result: Negative

Epitope: (Gly)5
Chemical type: Peptide from protein
Sequence: GGGGG
Assay category: BCell
Result: Negative

Epitope: (Gly)5
Chemical type: Peptide from protein
Sequence: GGGGG
Assay category: BCell
Result: Negative

Epitope: (Gly)5
Chemical type: Peptide from protein
Sequence: GGGGG
Assay category: BCell
Result: Positive

Epitope: (Gly)5
Chemical type: Peptide from protein
Sequence: GGGGG
Assay category: BCell
Result: Positive

Epitope: (Gly)5
Chemical type: Peptide from protein
Sequence: GGGGG
Assay category: BCell
Result: Positive-Intermediate

Epitope: (Gly)5
Chemical type: Peptide from protein
Sequence: GGGGG
Assay category: BCell
Result: Negative
Reference: M Shirai; T Arichi; M Chen; T Masaki; M Nishioka; K Ikeda; H Takahashi; N Enomoto; T Saito; M E Major; T Nakazawa; T Akatsuka; S M Feinstone; J A Berzofsky. "T cell recognition of hypervariable region-1 from hepatitis C virus envelope protein with multiple class II MHC molecules in mice and humans: preferential help for induction of antibodies to the hypervariable region." Journal of immunology (Baltimore, Md. : 1950) (1999).

Epitope: SS4 p390-410
Chemical type: Peptide from protein
Sequence: GSTAHNARTLTGMFSLGARQK
Position: 390-410
Source molecule (GenBank): P26660.3
Assay category: BCell
Result: Positive
Reference: P Del Porto; G Puntoriero; C Scottà; A Nicosia; E Piccolella. "High prevalence of hypervariable region 1-specific and -cross-reactive CD4(+) T cells in HCV-infected individuals responsive to IFN-alpha treatment." Virology (2000).

Epitope: 275
Chemical type: Peptide from protein
Sequence: STRITGGSMARDVYRFTGFFARGPSQN
Position: 6-32
Source molecule (GenBank): Q7M016
Assay category: BCell
Result: Positive

Epitope: 275
Chemical type: Peptide from protein
Sequence: STRITGGSMARDVYRFTGFFARGPSQN
Position: 6-32
Source molecule (GenBank): Q7M016
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: 266
Chemical type: Peptide from protein
Sequence: HTRVTGGVQGHVTSTLTSLFRPGASQK
Position: 384-410
Source molecule (GenBank): BAA00452.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Cheryl L Day; Georg M Lauer; Gregory K Robbins; Barbara McGovern; Alysse G Wurcel; Rajesh T Gandhi; Raymond T Chung; Bruce D Walker. "Broad specificity of virus-specific CD4+ T-helper-cell responses in resolved hepatitis C virus infection." Journal of virology (2002).

Epitope: p9 91-110
Chemical type: Peptide from protein
Sequence: CGWAGWLLSPRGSRPSWGPT
Position: 91-110
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
MHC allele types: 330 87
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: p128 1281-1300
Chemical type: Peptide from protein
Sequence: GVRTITTGSPITYSTYGKFL
Position: 1281-1300
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: p189 1891-1910
Chemical type: Peptide from protein
Sequence: ALVVGVVCAAILRRHVGPGE
Position: 1891-1910
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
MHC allele types: 330 87
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: p247 2471-2490
Chemical type: Peptide from protein
Sequence: KVTFDRLQVLDSHYQDVLKE
Position: 2471-2490
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: p265 2651-2670
Chemical type: Peptide from protein
Sequence: SDIRTEEAIYQCCDLDPQAR
Position: 2651-2670
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: p205
Chemical type: Peptide from protein
Sequence: TCRNMWSGTFPINAYTTGPC
Position: 2051-2070
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 330 87
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: p221
Chemical type: Peptide from protein
Sequence: LKATCTANHDSPDAELIEAN
Position: 2211-2230
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 330 87
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: p226
Chemical type: Peptide from protein
Sequence: AEEDEREISVPAEILRKSRR
Position: 2261-2280
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 330 87
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: p235
Chemical type: Peptide from protein
Sequence: SFGSSSTSGITGDNTTTSSE
Position: 2351-2370
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 330 87
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: p168
Chemical type: Peptide from protein
Sequence: VIVGRVVLSGKPAIIPDREV
Position: 1681-1700
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 330 87
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: R E Norton; M Heuzenroeder; P A Manning. "Antigenic epitope mapping of the M24 protein of Streptococcus pyogenes: implications for serodiagnosis of rheumatic fever." FEMS immunology and medical microbiology (1996).

Epitope: 46
Chemical type: Peptide from protein
Sequence: VQERADKFEIENNTLK
Position: 55-70
Source molecule (GenBank): P12379.1
Assay category: BCell
Result: Negative

Epitope: 112
Chemical type: Peptide from protein
Sequence: AEAKALKEKLAKQAEE
Position: 439-454
Source molecule (GenBank): P12379.1
Assay category: BCell
Result: Negative

Epitope: 122
Chemical type: Peptide from protein
Sequence: KETKRQLPSTGETANP
Position: 499-514
Source molecule (GenBank): P12379.1
Assay category: BCell
Result: Negative

Epitope: 124
Chemical type: Peptide from protein
Sequence: TANPFFTAAALTVMAT
Position: 511-526
Source molecule (GenBank): P12379.1
Assay category: BCell
Result: Negative
Reference: Georgios Amexis; Neal S Young. "Parvovirus B19 empty capsids as antigen carriers for presentation of antigenic determinants of dengue 2 virus." The Journal of infectious diseases (2006).

Epitope: aa 352-368
Chemical type: Peptide from protein
Sequence: ITVNPIVTEKDSPVNIE
Position: 352-368
Source molecule (GenBank): AAS49651.3
Assay category: BCell
Result: Positive

Epitope: aa 352-368
Chemical type: Peptide from protein
Sequence: ITVNPIVTEKDSPVNIE
Position: 352-368
Source molecule (GenBank): AAS49651.3
Assay category: BCell
Result: Positive

Epitope: aa 352-368
Chemical type: Peptide from protein
Sequence: ITVNPIVTEKDSPVNIE
Position: 352-368
Source molecule (GenBank): AAS49651.3
Assay category: BCell
Result: Positive
Reference: D D Eckels; H Zhou; T H Bian; H Wang. "Identification of antigenic escape variants in an immunodominant epitope of hepatitis C virus." International immunology (1999).

Epitope: NS3 43-60
Chemical type: Peptide from protein
Sequence: FLATCINGVCWTVYHGAG
Position: 1069-1086
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 336
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NS3 99-116
Chemical type: Peptide from protein
Sequence: CGSSDLYLVTRHADVIPV
Position: 1125-1142
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 336
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NS3 197-214
Chemical type: Peptide from protein
Sequence: FQVAHLHAPTGSGKSTKV
Position: 1223-1240
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 336
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NS3 344-361
Chemical type: Peptide from protein
Sequence: TGEIPFYGKAIPLEVIKG
Position: 1370-1387
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 336
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NS3 407-424
Chemical type: Peptide from protein
Sequence: VVVATDALMTGYTGDFDS
Position: 1433-1450
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 336
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NS3 435-452
Chemical type: Peptide from protein
Sequence: TVDFSLDPTFTIETITLP
Position: 1461-1478
Source molecule (GenBank): P26664.3
Assay category: TCell
Result: Negative
MHC allele types: 336
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Hanna Lewicki; Antoinette Tishon; Dirk Homann; Honoré Mazarguil; Françoise Laval; Valerie C Asensio; Iain L Campbell; Stephen DeArmond; Bryan Coon; Chao Teng; Jean Edouard Gairin; Michael B A Oldstone. "T cells infiltrate the brain in murine and human transmissible spongiform encephalopathies." Journal of virology (2003).

Epitope: mPrP 3
Chemical type: Peptide from protein
Sequence: LFVTMWTDVGLCKKR
Position: 11-25
Source molecule (GenBank): P04925.2
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: mPrP 3
Chemical type: Peptide from protein
Sequence: LFVTMWTDVGLCKKR
Position: 11-25
Source molecule (GenBank): P04925.2
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: mPrP 8
Chemical type: Peptide from protein
Sequence: SRYPGQGSPGGNRYP
Position: 36-50
Source molecule (GenBank): P04925.2
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: mPrP 8
Chemical type: Peptide from protein
Sequence: SRYPGQGSPGGNRYP
Position: 36-50
Source molecule (GenBank): P04925.2
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: mPrP 9
Chemical type: Peptide from protein
Sequence: QGSPGGNRYPPQGGT
Position: 41-55
Source molecule (GenBank): P04925.2
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: mPrP 9
Chemical type: Peptide from protein
Sequence: QGSPGGNRYPPQGGT
Position: 41-55
Source molecule (GenBank): P04925.2
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: spleen
Culture conditions: Direct Ex Vivo