LiteFold/IEDB huggingface dataset:
Reference: Qingda Meng; Davide Valentini; Martin Rao; Zhenjiang Liu; Shanshan Xie; Ann Morgell; Ernest Dodoo; Matthias Löhr; Elena Rangelova; Marco Del Chiaro; Ingemar Ernberg; Markus Maeurer. "Prediction of improved survival in patients with pancreatic cancer via IL-21 enhanced detection of mesothelin epitope-reactive T-cell responses." Oncotarget (2018).

Epitope: Mesothelin-33
Chemical type: Peptide from protein
Sequence: LDVLYPKARLAFQNM
Position: 481-495
Source molecule (GenBank): Q13421.2
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Mesothelin-37
Chemical type: Peptide from protein
Sequence: PLTVAEVQKLLGPHV
Position: 541-555
Source molecule (GenBank): Q13421.2
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Epitope: VZV-ORF37(401-413)
Chemical type: Peptide from protein
Sequence: KFLNYILMRIGAG
Position: 401-413
Source molecule (GenBank): NP_040160.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: VZV-ORF63(229-241)
Chemical type: Peptide from protein
Sequence: QRAIERYAGAETA
Position: 229-241
Source molecule (GenBank): NP_040185.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: VZV-ORF41(69-81)
Chemical type: Peptide from protein
Sequence: RFAAVITRVIPGK
Position: 69-81
Source molecule (GenBank): NP_040164.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone
Epitope: WR042(441-453)
Chemical type: Peptide from protein
Sequence: ELIIVDNKLLLIG
Position: 441-453
Source molecule (GenBank): YP_232924.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: WR101(165-177)
Chemical type: Peptide from protein
Sequence: ELVMDKNHAIFTY
Position: 165-177
Source molecule (GenBank): YP_232983.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: WR055(193-205)
Chemical type: Peptide from protein
Sequence: ITSFRRFVNKLKM
Position: 193-205
Source molecule (GenBank): YP_232937.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: WR055(193-205)
Chemical type: Peptide from protein
Sequence: ITSFRRFVNKLKM
Position: 193-205
Source molecule (GenBank): YP_232937.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Sunithi Gunasekera; Cátia Fernandes-Cerqueira; Stefan Wennmalm; Heidi Wähämaa; Yngve Sommarin; Anca I Catrina; Per-Johan Jakobsson; Ulf Göransson. "Stabilized Cyclic Peptides as Scavengers of Autoantibodies: Neutralization of Anticitrullinated Protein/Peptide Antibodies in Rheumatoid Arthritis." ACS chemical biology (2018).

Epitope: c[Arg573]fib 566-580
Chemical type: Peptide from protein
Sequence: GIAEFPSRGKSSSYS
Position: 566-580
Source molecule (GenBank): P02671.2
Assay category: BCell
Result: Negative
Reference: Johana Hrdinová; Fabian C Verbij; Paul H P Kaijen; Robin B Hartholt; Floris van Alphen; Neubury Lardy; Anja Ten Brinke; Karen Vanhoorelbeke; Pooja J Hindocha; Anne S De Groot; Alexander B Meijer; Jan Voorberg; Ivan Peyron. "Mass spectrometry-assisted identification of ADAMTS13-derived peptides presented on HLA-DR and HLA-DQ." Haematologica (2018).

Epitope: ADAMTS13 705-717
Chemical type: Peptide from protein
Sequence: WVNYSCLDQARKE
Position: 705-717
Source molecule (GenBank): AAL11095.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 94 769 774 101 313 542 318 321 320 515 317 316 770 323 324
Reference: Marcus Rebouças Santos; Viviane Sisdelli Assao; Fabiana de Almeida Araújo Santos; Rafael Locatelli Salgado; Ana Paula Carneiro; Juliana Lopes Rangel Fietto; Gustavo Costa Bressan; Márcia Rogéria de Almeida; Zelia Inês Portela Lobato; Carlos Ueira-Veira; Luíz Ricardo Goulart; Abelardo Silva-Júnior. "Utilization of phage display to identify antigenic regions in the PCV2 capsid protein for the evaluation of serological responses in mice and pigs." Archives of virology (2018).

Epitope: S6
Chemical type: Peptide, no natural source
Sequence: FNTAWARAPLNL
Assay category: BCell
Result: Positive

Epitope: C1
Chemical type: Peptide, no natural source
Sequence: KTPGNAY
Assay category: BCell
Result: Positive
Host: F

Epitope: C6
Chemical type: Peptide, no natural source
Sequence: PLSPSVE
Assay category: BCell
Result: Positive
Host: F

Epitope: C13
Chemical type: Peptide, no natural source
Sequence: MAPDSRV
Assay category: BCell
Result: Positive
Host: F

Epitope: C21
Chemical type: Peptide, no natural source
Sequence: YMHLTHG
Assay category: BCell
Result: Positive
Host: F

Epitope: F3
Chemical type: Peptide, no natural source
Sequence: CYPETRPIPWRV
Assay category: BCell
Result: Positive

Epitope: F3
Chemical type: Peptide, no natural source
Sequence: CYPETRPIPWRV
Assay category: BCell
Result: Positive

Epitope: PF1
Chemical type: Peptide, no natural source
Sequence: CFLPPGGGSNT
Assay category: BCell
Result: Positive
Host: M 4-6 weeks
Reference: Renata Blatnik; Nitya Mohan; Maria Bonsack; Lasse G Falkenby; Stephanie Hoppe; Kathrin Josef; Alina Steinbach; Sara Becker; Wiebke M Nadler; Marijana Rucevic; Martin R Larsen; Mogjiborahman Salek; Angelika B Riemer. "A Targeted LC-MS Strategy for Low-Abundant HLA Class-I-Presented Peptide Detection Identifies Novel Human Papillomavirus T-Cell Epitopes." Proteomics (2018).

Epitope: E7 (7-15)
Chemical type: Peptide from protein
Sequence: TLHEYMLDL
Position: 7-15
Source molecule (GenBank): AAD33253.1
Assay category: TCell
Result: Positive
Host: F >40 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: E7 (7-15)
Chemical type: Peptide from protein
Sequence: TLHEYMLDL
Position: 7-15
Source molecule (GenBank): AAD33253.1
Assay category: MhcLigandElution
Result: Positive

Epitope: E7 (7-15)
Chemical type: Peptide from protein
Sequence: TLHEYMLDL
Position: 7-15
Source molecule (GenBank): AAD33253.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2680.0

Epitope: E7 (11-19) mod
Chemical type: Peptide from protein
Sequence: YMLDLQPET
Position: 11-19
Source molecule (GenBank): AAD33253.1
Assay category: MhcLigandElution
Result: Positive

Epitope: E7 (80-90)
Chemical type: Peptide from protein
Sequence: EDLLMGTLGIV
Position: 80-90
Source molecule (GenBank): AAD33253.1
Assay category: MhcLigandElution
Result: Positive

Epitope: E7 (81-90)
Chemical type: Peptide from protein
Sequence: DLLMGTLGIV
Position: 81-90
Source molecule (GenBank): AAD33253.1
Assay category: TCell
Result: Positive
Host: F >40 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: E7 (81-90)
Chemical type: Peptide from protein
Sequence: DLLMGTLGIV
Position: 81-90
Source molecule (GenBank): AAD33253.1
Assay category: MhcLigandElution
Result: Positive

Epitope: E7 (81-90)
Chemical type: Peptide from protein
Sequence: DLLMGTLGIV
Position: 81-90
Source molecule (GenBank): AAD33253.1
Assay category: MhcBinding
Result: Positive-Low
Quantitative measurement: 80990.0
Reference: Hadi Karimzadeh; Muthamia M Kiraithe; Anna D Kosinska; Manuel Glaser; Melanie Fiedler; Valerie Oberhardt; Elahe Salimi Alizei; Maike Hofmann; Juk Yee Mok; Melanie Nguyen; Wim J E van Esch; Bettina Budeus; Jan Grabowski; Maria Homs; Antonella Olivero; Hossein Keyvani; Francisco Rodríguez-Frías; David Tabernero; Maria Buti; Andreas Heinold; Seyed Moayed Alavian; Tanja Bauer; Julian Schulze Zur Wiesch; Bijan Raziorrouh; Daniel Hoffmann; Antonina Smedile; Mario Rizzetto; Heiner Wedemeyer; Jörg Timm; Iris Antes; Christoph Neumann-Haefelin; Ulrike Protzer; Michael Roggendorf. "Amino Acid Substitutions within HLA-B*27-Restricted T Cell Epitopes Prevent Recognition by Hepatitis Delta Virus-Specific CD8<sup>+</sup> T Cells." Journal of virology (2018).

Epitope: L-HDAg 192-200
Chemical type: Peptide from protein
Sequence: RGFPWDILF
Position: 192-200
Source molecule (GenBank): P25880.1
Assay category: MhcBinding
Result: Negative

Epitope: L-HDAg 99–108
Chemical type: Peptide from protein
Sequence: RRDHRRRKAL
Position: 99-108
Source molecule (GenBank): CAJ66091.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: L-HDAg 99–108
Chemical type: Peptide from protein
Sequence: RRDHRRRKAL
Position: 99-108
Source molecule (GenBank): CAJ66091.1
Assay category: MhcBinding
Result: Positive-High

Epitope: B6
Chemical type: Peptide from protein
Sequence: LRKTKKKLKKIEDENP
Position: 34-49
Source molecule (GenBank): AAA45723.1
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: E16
Chemical type: Peptide from protein
Sequence: QLSAGGKNLSKEEEEE
Position: 114-129
Source molecule (GenBank): AAA45723.1
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: G23a
Chemical type: Peptide from protein
Sequence: NLQGVPESPFARTGEG
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: G24a
Chemical type: Peptide from protein
Sequence: PFARTGEGLDIRGNQG
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: KLEDLERDL
Chemical type: Peptide from protein
Sequence: KLEDLERDL
Position: 26-34
Source molecule (GenBank): AAG26087.1
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RRRKALENKR
Chemical type: Peptide from protein
Sequence: RRRKALENKR
Position: 103-112
Source molecule (GenBank): AAG26087.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RRDHRRRMAL
Chemical type: Peptide from protein
Sequence: RRDHRRRMAL
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: RRDHRRRMAL
Chemical type: Peptide from protein
Sequence: RRDHRRRMAL
Assay category: MhcBinding
Result: Positive
Reference: Neha R Deshpande; Jennifer L Uhrlaub; Sing Sing Way; Janko Nikolich-Žugich; Michael S Kuhns. "A disconnect between precursor frequency, expansion potential, and site-specific CD4+ T cell responses in aged mice." PloS one (2018).

Epitope: WNV Env 641-655
Chemical type: Peptide from protein
Sequence: PVGRLVTVNPFVSVA
Position: 351-365
Source molecule (GenBank): YP_001527880.1
Assay category: TCell
Result: Positive
Host:  12 weeks - 22 months
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: WNV Env 641-655
Chemical type: Peptide from protein
Sequence: PVGRLVTVNPFVSVA
Position: 351-365
Source molecule (GenBank): YP_001527880.1
Assay category: TCell
Result: Positive
Host:  12 weeks - 22 months
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: WNV Env 641-655
Chemical type: Peptide from protein
Sequence: PVGRLVTVNPFVSVA
Position: 351-365
Source molecule (GenBank): YP_001527880.1
Assay category: TCell
Result: Positive
Host:  12 weeks - 22 months
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: WNV Env 641-655
Chemical type: Peptide from protein
Sequence: PVGRLVTVNPFVSVA
Position: 351-365
Source molecule (GenBank): YP_001527880.1
Assay category: TCell
Result: Positive
Host:  12 weeks - 22 months
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo
Reference: Ziqing Jiang; Lajos Gera; Colin T Mant; Brooke Hirsch; Zhe Yan; Jonathan A Shortt; David D Pollock; Zhaohui Qian; Kathryn V Holmes; Robert S Hodges. "Platform technology to generate broadly cross-reactive antibodies to α-helical epitopes in hemagglutinin proteins from influenza A viruses." Biopolymers. (2016).

Epitope: 6A
Chemical type: Peptide, no natural source
Sequence: LCLNLKNLIEKVKSQIKNLAKEI
Assay category: BCell
Result: Negative

Epitope: 6A
Chemical type: Peptide, no natural source
Sequence: LCLNLKNLIEKVKSQIKNLAKEI
Assay category: BCell
Result: Negative

Epitope: 6A
Chemical type: Peptide, no natural source
Sequence: LCLNLKNLIEKVKSQIKNLAKEI
Assay category: BCell
Result: Negative

Epitope: 6A
Chemical type: Peptide, no natural source
Sequence: LCLNLKNLIEKVKSQIKNLAKEI
Assay category: BCell
Result: Positive

Epitope: 6A
Chemical type: Peptide, no natural source
Sequence: LCLNLKNLIEKVKSQIKNLAKEI
Assay category: BCell
Result: Negative
Reference: Abenaya Muralidharan; Caroline Gravel; Amparo Duran; Louise Larocque; Changgui Li; Adrian Zetner; Gary Van Domselaar; Lisheng Wang; Xuguang Li. "Identification of immunodominant CD8 epitope in the stalk domain of influenza B viral hemagglutinin." Biochemical and biophysical research communications (2018).

Epitope: B/HA2-40
Chemical type: Peptide from protein
Sequence: STQEAINKI
Position: 402-410
Source molecule (GenBank): P22092.1
Assay category: TCell
Result: Positive-Low
Host: F 12-14 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: B/HA2-40
Chemical type: Peptide from protein
Sequence: STQEAINKI
Position: 402-410
Source molecule (GenBank): P22092.1
Assay category: TCell
Result: Positive-Low
Host: F 12-14 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: B/HA2-40
Chemical type: Peptide from protein
Sequence: STQEAINKI
Position: 402-410
Source molecule (GenBank): P22092.1
Assay category: TCell
Result: Positive-Low
Host: F 12-14 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: B/HA2-40
Chemical type: Peptide from protein
Sequence: STQEAINKI
Position: 402-410
Source molecule (GenBank): P22092.1
Assay category: TCell
Result: Positive-Low
Host: F 12-14 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: B/HA2-40
Chemical type: Peptide from protein
Sequence: STQEAINKI
Position: 402-410
Source molecule (GenBank): P22092.1
Assay category: TCell
Result: Positive-Low
Host: F 12-14 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: B/HA2-40
Chemical type: Peptide from protein
Sequence: STQEAINKI
Position: 402-410
Source molecule (GenBank): P22092.1
Assay category: TCell
Result: Positive-Low
Host: F 12-14 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Anthony DiPiazza; Nathan Laniewski; Ajitanuj Rattan; David J Topham; Jim Miller; Andrea J Sant. "CD4 T Cell Epitope Specificity and Cytokine Potential Are Preserved as Cells Transition from the Lung Vasculature to Lung Tissue following Influenza Virus Infection." Journal of virology (2018).

Epitope: M1 103
Chemical type: Peptide from protein
Sequence: LKREITFHGAKEIALSY
Position: 103-119
Source molecule (GenBank): ABF21304.1
Assay category: TCell
Result: Positive
Host: F 12-18 weeks
Cell type: T cell CD4+
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: M1 103
Chemical type: Peptide from protein
Sequence: LKREITFHGAKEIALSY
Position: 103-119
Source molecule (GenBank): ABF21304.1
Assay category: TCell
Result: Positive
Host: F 12-18 weeks
Cell type: T cell CD4+
Tissue: lung
Culture conditions: Direct Ex Vivo

Epitope: M1 103
Chemical type: Peptide from protein
Sequence: LKREITFHGAKEIALSY
Position: 103-119
Source molecule (GenBank): ABF21304.1
Assay category: TCell
Result: Positive
Host: F 12-18 weeks
Cell type: T cell CD4+
Tissue: lung
Culture conditions: Direct Ex Vivo
Reference: Carolina López; Yoelis Yepes-Pérez; Diana Díaz-Arévalo; Manuel E Patarroyo; Manuel A Patarroyo. "The  Antigenicity of  Rhoptry Neck Protein 2 (RON2) B- and T-Epitopes Selected by HLA-DRB1 Binding Profile." Frontiers in cellular and infection microbiology (2018).

Epitope: 39151
Chemical type: Peptide from protein
Sequence: KLKYIFKRRKTMKKK
Position: 2157-2171
Source molecule (GenBank): SGX79207.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 40000.0

Epitope: 39151
Chemical type: Peptide from protein
Sequence: KLKYIFKRRKTMKKK
Position: 2157-2171
Source molecule (GenBank): SGX79207.1
Assay category: MhcBinding
Result: Negative

Epitope: 39151
Chemical type: Peptide from protein
Sequence: KLKYIFKRRKTMKKK
Position: 2157-2171
Source molecule (GenBank): SGX79207.1
Assay category: MhcBinding
Result: Positive-Low
Quantitative measurement: 51100.0

Epitope: 39151
Chemical type: Peptide from protein
Sequence: KLKYIFKRRKTMKKK
Position: 2157-2171
Source molecule (GenBank): SGX79207.1
Assay category: MhcBinding
Result: Negative
Reference: Jingjing Guo; Xiahui Sun; Huiquan Yin; Ting Wang; Yan Li; Chunxue Zhou; Huaiyu Zhou; Shenyi He; Hua Cong. "Chitosan Microsphere Used as an Effective System to Deliver a Linked Antigenic Peptides Vaccine Protect Mice Against Acute and Chronic ." Frontiers in cellular and infection microbiology (2018).

Epitope: GRA10 49−57
Chemical type: Peptide from protein
Sequence: LPKKGVPVG
Position: 49-57
Source molecule (GenBank): AAV36002.1
Assay category: TCell
Result: Negative
Cell type: lymphocyte
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: GRA10 170−184
Chemical type: Peptide from protein
Sequence: LTEEQFRHIRRLQKR
Position: 170-184
Source molecule (GenBank): AAV36002.1
Assay category: TCell
Result: Negative
Cell type: lymphocyte
Tissue: lymph node
Culture conditions: Direct Ex Vivo
Reference: Valentina A Feodorova; Anna M Lyapina; Maria A Khizhnyakova; Sergey S Zaitsev; Lidiya V Sayapina; Tatiana E Arseneva; Alexey L Trukhachev; Svetlana A Lebedeva; Maxim V Telepnev; Onega V Ulianova; Elena P Lyapina; Sergey S Ulyanov; Vladimir L Motin. "Humoral and cellular immune responses to Yersinia pestis Pla antigen in humans immunized with live plague vaccine." PLoS neglected tropical diseases (2018).

Epitope: Pla (76-90)
Chemical type: Peptide from protein
Sequence: DISWDPYSFLTLNAR
Position: 76-90
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Negative
Host:  26-72 years

Epitope: Pla (76-90)
Chemical type: Peptide from protein
Sequence: DISWDPYSFLTLNAR
Position: 76-90
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Negative

Epitope: Pla (96-110)
Chemical type: Peptide from protein
Sequence: ASGSGNMDDYDWMNE
Position: 96-110
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Positive
Host:  26-72 years

Epitope: Pla (96-110)
Chemical type: Peptide from protein
Sequence: ASGSGNMDDYDWMNE
Position: 96-110
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Positive

Epitope: Pla (156-170)
Chemical type: Peptide from protein
Sequence: ETRFSWTATGGSYSY
Position: 156-170
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Negative

Epitope: Pla (156-170)
Chemical type: Peptide from protein
Sequence: ETRFSWTATGGSYSY
Position: 156-170
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Negative
Host:  26-72 years

Epitope: Pla (266-280)
Chemical type: Peptide from protein
Sequence: TYSKYDEGKGGTQTI
Position: 266-280
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Negative

Epitope: Pla (266-280)
Chemical type: Peptide from protein
Sequence: TYSKYDEGKGGTQTI
Position: 266-280
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Positive
Host:  26-72 years

Epitope: Pla (276-290)
Chemical type: Peptide from protein
Sequence: GTQTIDKNSGDSVSI
Position: 276-290
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Negative

Epitope: Pla (276-290)
Chemical type: Peptide from protein
Sequence: GTQTIDKNSGDSVSI
Position: 276-290
Source molecule (GenBank): CAB53170.1
Assay category: BCell
Result: Positive
Host:  26-72 years
Reference: Matthew J Atherton; Kyle B Stephenson; Fanny Tzelepis; David Bakhshinyan; Jake K Nikota; Hwan Hee Son; Anna Jirovec; Charles Lefebvre; Anna Dvorkin-Gheva; Ali A Ashkar; Yonghong Wan; David F Stojdl; Eric C Belanger; Rodney H Breau; John C Bell; Fred Saad; Sheila K Singh; Jean-Simone Diallo; Brian D Lichty. "Transforming the prostatic tumor microenvironment with oncolytic virotherapy." Oncoimmunology (2018).

Epitope: muSTEAP 186
Chemical type: Peptide from protein
Sequence: RSYRYKLL
Position: 186-193
Source molecule (GenBank): Q9CWR7.2
Assay category: TCell
Result: Positive-Low
Host: M 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: muSTEAP 186
Chemical type: Peptide from protein
Sequence: RSYRYKLL
Position: 186-193
Source molecule (GenBank): Q9CWR7.2
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Hong Tian; Yu He; Xiaoda Song; Liangliang Jiang; Jianhua Luo; Yi Xu; Wanli Zhang; Xiangdong Gao; Wenbing Yao. "Nitrated T helper cell epitopes enhance the immunogenicity of HER2 vaccine and induce anti-tumor immunity." Cancer letters (2018).

Epitope: B-T3
Chemical type: Peptide, no natural source
Sequence: LAKFVAAWTLKAAA
Assay category: TCell
Result: Positive-High
Host: F 6-8 weeks
Reference: Makoto Hirasawa; Katsunobu Hagihara; Koji Abe; Osamu Ando; Noriaki Hirayama. "Interaction of Nevirapine with the Peptide Binding Groove of HLA-DRB1*01:01 and Its Effect on the Conformation of HLA-Peptide Complex." International journal of molecular sciences (2018).

Epitope: HA 306-318
Chemical type: Peptide from protein
Sequence: PRYVKQNTLKLAT
Position: 306-318
Source molecule (GenBank): P12589.1
Assay category: MhcBinding
Result: Positive
Reference: Louise C Rowntree; Thi H O Nguyen; Hanim Halim; Anthony W Purcell; Jamie Rossjohn; Stephanie Gras; Tom C Kotsimbos; Nicole A Mifsud. "Inability To Detect Cross-Reactive Memory T Cells Challenges the Frequency of Heterologous Immunity among Common Viruses." Journal of immunology (Baltimore, Md. : 1950) (2018).

Epitope: IAV(LPF: NP(418)
Chemical type: Peptide from protein
Sequence: LPFDRTTIM
Position: 418-426
Source molecule (GenBank): P03466.2
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: IAV(LPF: NP(418)
Chemical type: Peptide from protein
Sequence: LPFDRTTIM
Position: 418-426
Source molecule (GenBank): P03466.2
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated