LiteFold/IEDB huggingface dataset:
Reference: Jiju Mani; Lei Wang; Angela G Hückelhoven; Anita Schmitt; Alma Gedvilaite; Nan Jin; Christian Kleist; Anthony D Ho; Michael Schmitt. "Definition and characterization of novel HLA-*A02-restricted CD8+ T cell epitopes derived from JCV polyomavirus with clinical relevance." Oncotarget (2017).

Epitope: OP72 (285-299)
Chemical type: Peptide from protein
Sequence: KRRVKNPYPISFLLT
Position: 285-299
Source molecule (GenBank): AFH57194.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: OP78 (309-323)
Chemical type: Peptide from protein
Sequence: VDGQPMYGMDAQVEE
Position: 309-323
Source molecule (GenBank): AFH57194.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: OP-3
Chemical type: Peptide from protein
Sequence: ERKDPVQVPKLLIRG
Position: 9-23
Source molecule (GenBank): AFH57194.1
Assay category: TCell
Result: Negative
MHC allele types: 143
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: OP-19
Chemical type: Peptide from protein
Sequence: PSKDMLPCYSVARIP
Position: 73-87
Source molecule (GenBank): AFH57194.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: OP-27
Chemical type: Peptide from protein
Sequence: AVTLKTEVIGVTSLM
Position: 105-119
Source molecule (GenBank): AFH57194.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: OP-39
Chemical type: Peptide from protein
Sequence: ELQGVVFNYRTKYPD
Position: 153-167
Source molecule (GenBank): AFH57194.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: OP-45
Chemical type: Peptide from protein
Sequence: VQSQVMNTEHKAYLD
Position: 177-191
Source molecule (GenBank): AFH57194.1
Assay category: TCell
Result: Negative
MHC allele types: 143
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: OP-65
Chemical type: Peptide from protein
Sequence: VDVCGMFTNRSGSQQ
Position: 257-271
Source molecule (GenBank): AFH57194.1
Assay category: TCell
Result: Negative
MHC allele types: 143
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Beatriz C S Salles; Lourena E Costa; Patrícia T Alves; Ana C S Dias; Emília R Vaz; Daniel Menezes-Souza; Fernanda F Ramos; Mariana C Duarte; Bruno M Roatt; Miguel A Chávez-Fumagalli; Carlos A P Tavares; Denise U Gonçalves; Regina L Rocha; Luiz R Goulart; Eduardo A F Coelho. "Leishmania infantum mimotopes and a phage-ELISA assay as tools for a sensitive and specific serodiagnosis of human visceral leishmaniasis." Diagnostic microbiology and infectious disease (2017).

Epitope: A11
Chemical type: Peptide, no natural source
Sequence: RYVSVAS
Assay category: BCell
Result: Negative
Host:  18-47 years

Epitope: A11
Chemical type: Peptide, no natural source
Sequence: RYVSVAS
Assay category: BCell
Result: Positive
Host:  22-58 years

Epitope: A11
Chemical type: Peptide, no natural source
Sequence: RYVSVAS
Assay category: BCell
Result: Negative
Host:  17-42 years

Epitope: A11
Chemical type: Peptide, no natural source
Sequence: RYVSVAS
Assay category: BCell
Result: Negative
Host:  27-55 years

Epitope: A11
Chemical type: Peptide, no natural source
Sequence: RYVSVAS
Assay category: BCell
Result: Negative
Host:  22-62 years
Reference: Zemin Zhou; Eduardo Reyes-Vargas; Hernando Escobar; Kuan Y Chang; Adam P Barker; Alan L Rockwood; Julio C Delgado; Xiao He; Peter E Jensen. "Peptidomic analysis of type 1 diabetes associated HLA-DQ molecules and the impact of HLA-DM on peptide repertoire editing." European journal of immunology (2017).

Epitope: CKA362
Chemical type: Peptide from protein
Sequence: SPLGPLAGSPVIAAANPL
Position: 362-379
Source molecule (GenBank): P68400.1
Assay category: MhcLigandElution
Result: Positive

Epitope: CKA362
Chemical type: Peptide from protein
Sequence: SPLGPLAGSPVIAAANPL
Position: 362-379
Source molecule (GenBank): P68400.1
Assay category: MhcBinding
Result: Positive-Intermediate
Quantitative measurement: 1752.0

Epitope: CKA362
Chemical type: Peptide from protein
Sequence: SPLGPLAGSPVIAAANPL
Position: 362-379
Source molecule (GenBank): P68400.1
Assay category: MhcBinding
Result: Positive-High
Quantitative measurement: 122.8
Reference: Galina Obmolova; Alexey Teplyakov; Thomas J Malia; Nicole Wunderler; Deborah Kwok; Linda Barone; Raymond Sweet; Tatiana Ort; Michael Scully; Gary L Gilliland. "Epitope-dependent mechanisms of CD27 neutralization revealed by X-ray crystallography." Molecular immunology (2017).

Epitope: Epitope of M2191 on CD27
Chemical type: Discontinuous protein residues
Discontinuous residues: T47, F48, Q61, D63, P64, C65, I66, P67, G68, V69, H80, S83, C84, H86, I98
Source molecule (GenBank): P26842.2
Assay category: BCell
Result: Positive
Quantitative measurement: 3.5
Host:  12-14 weeks

Epitope: Epitope of M2191 on CD27
Chemical type: Discontinuous protein residues
Discontinuous residues: T47, F48, Q61, D63, P64, C65, I66, P67, G68, V69, H80, S83, C84, H86, I98
Source molecule (GenBank): P26842.2
Assay category: BCell
Result: Positive
Quantitative measurement: 20.0
Host:  12-14 weeks

Epitope: Epitope of M2191 on CD27
Chemical type: Discontinuous protein residues
Discontinuous residues: T47, F48, Q61, D63, P64, C65, I66, P67, G68, V69, H80, S83, C84, H86, I98
Source molecule (GenBank): P26842.2
Assay category: BCell
Result: Positive
Host:  12-14 weeks

Epitope: Epitope of M2191 on CD27
Chemical type: Discontinuous protein residues
Discontinuous residues: T47, F48, Q61, D63, P64, C65, I66, P67, G68, V69, H80, S83, C84, H86, I98
Source molecule (GenBank): P26842.2
Assay category: BCell
Result: Positive
Quantitative measurement: 0.0096
Host:  12-14 weeks

Epitope: Epitope of M2191 on CD27
Chemical type: Discontinuous protein residues
Discontinuous residues: T47, F48, Q61, D63, P64, C65, I66, P67, G68, V69, H80, S83, C84, H86, I98
Source molecule (GenBank): P26842.2
Assay category: BCell
Result: Positive
Quantitative measurement: 470000.0
Host:  12-14 weeks
Reference: Stefania Picascia; John Sidney; Alessandra Camarca; Giuseppe Mazzarella; Nicola Giardullo; Luigi Greco; Renata Auricchio; Salvatore Auricchio; Riccardo Troncone; Alessandro Sette; Carmen Gianfrani. "Gliadin-Specific CD8<sup>+</sup> T Cell Responses Restricted by HLA Class I A*0101 and B*0801 Molecules in Celiac Disease Patients." Journal of immunology (Baltimore, Md. : 1950) (2017).

Epitope: omega gliadin 414-423
Chemical type: Peptide from protein
Sequence: SEEPSPYQQY
Position: 414-423
Source molecule (GenBank): Q402I5.1
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: omega gliadin 414-423
Chemical type: Peptide from protein
Sequence: SEEPSPYQQY
Position: 414-423
Source molecule (GenBank): Q402I5.1
Assay category: TCell
Result: Positive
Host:  5-60 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: omega gliadin 414-423
Chemical type: Peptide from protein
Sequence: SEEPSPYQQY
Position: 414-423
Source molecule (GenBank): Q402I5.1
Assay category: MhcBinding
Result: Negative
Quantitative measurement: 100000.0

Epitope: omega gliadin 414-423
Chemical type: Peptide from protein
Sequence: SEEPSPYQQY
Position: 414-423
Source molecule (GenBank): Q402I5.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 110.0

Epitope: gamma gliadin 189-197
Chemical type: Peptide from protein
Sequence: LQQSKPASL
Position: 189-197
Source molecule (GenBank): P08453.1
Assay category: MhcBinding
Result: Positive-Low
Quantitative measurement: 58779.0

Epitope: gamma gliadin 189-197
Chemical type: Peptide from protein
Sequence: LQQSKPASL
Position: 189-197
Source molecule (GenBank): P08453.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 35.0

Epitope: alpha gliadin 238-246
Chemical type: Peptide from protein
Sequence: FEEIRNLAL
Position: 238-246
Source molecule (GenBank): Q9M4M5.1
Assay category: MhcBinding
Result: Negative
Quantitative measurement: 100000.0

Epitope: alpha gliadin 238-246
Chemical type: Peptide from protein
Sequence: FEEIRNLAL
Position: 238-246
Source molecule (GenBank): Q9M4M5.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 46.0
Reference: Rodrigo Nunes Rodrigues-da-Silva; Isabela Ferreira Soares; Cesar Lopez-Camacho; João Hermínio Martins da Silva; Daiana de Souza Perce-da-Silva; Antônio Têva; Antônia Maria Ramos Franco; Francimeire Gomes Pinheiro; Lana Bitencourt Chaves; Lilian Rose Pratt-Riccio; Arturo Reyes-Sandoval; Dalma Maria Banic; Josué da Costa Lima-Junior. "Cell-Traversal Protein for Ookinetes and Sporozoites: Naturally Acquired Humoral Immune Response and B-Cell Epitope Mapping in Brazilian Amazon Inhabitants." Frontiers in immunology (2017).

Epitope: Pv (37-51)
Chemical type: Peptide from protein
Sequence: RGKSGSTASSSLEGG
Position: 37-51
Source molecule (GenBank): Q53UB7
Assay category: BCell
Result: Negative
Host:  10-89 years

Epitope: Pv (61-75)
Chemical type: Peptide from protein
Sequence: SLSSFLSESASLEVI
Position: 61-75
Source molecule (GenBank): Q53UB7
Assay category: BCell
Result: Positive-Low
Host:  10-89 years

Epitope: Pv (73-93)
Chemical type: Peptide from protein
Sequence: EVIGNELADNIANEIVSSLQK
Position: 73-93
Source molecule (GenBank): Q53UB7
Assay category: BCell
Result: Positive
Host:  10-89 years
Reference: César Reyes; Armando Moreno-Vranich; Manuel Elkin Patarroyo. "The role of pi-interactions and hydrogen bonds in fully protective synthetic malaria vaccine development." Biochemical and biophysical research communications (2017).

Epitope: EBA-175 (24150.24)
Chemical type: Peptide, no natural source
Sequence: WKSYSVDDNIPMNMSLIHKH
Assay category: BCell
Result: Positive

Epitope: EBA-175 (24150.24)
Chemical type: Peptide, no natural source
Sequence: WKSYSVDDNIPMNMSLIHKH
Assay category: BCell
Result: Positive

Epitope: EBA-175 (22812.20)
Chemical type: Peptide, no natural source
Sequence: NNDRIYDMNHLMIKMHILAI
Assay category: BCell
Result: Positive

Epitope: EBA-175 (22812.20)
Chemical type: Peptide, no natural source
Sequence: NNDRIYDMNHLMIKMHILAI
Assay category: BCell
Result: Positive

Epitope: serine repeat antigen (24216.3)
Chemical type: Peptide, no natural source
Sequence: DQGNTITAWNRAAKFHLETI
Assay category: BCell
Result: Positive

Epitope: serine repeat antigen (24216.3)
Chemical type: Peptide, no natural source
Sequence: DQGNTITAWNRAAKFHLETI
Assay category: BCell
Result: Positive
Reference: Daniele Mennonna; Cristina Maccalli; Michele C Romano; Claudio Garavaglia; Filippo Capocefalo; Roberta Bordoni; Marco Severgnini; Gianluca De Bellis; John Sidney; Alessandro Sette; Alessandro Gori; Renato Longhi; Marco Braga; Luca Ghirardelli; Ludovica Baldari; Elena Orsenigo; Luca Albarello; Elisabetta Zino; Katharina Fleischhauer; Gina Mazzola; Norma Ferrero; Antonio Amoroso; Giulia Casorati; Giorgio Parmiani; Paolo Dellabona. "T cell neoepitope discovery in colorectal cancer by high throughput profiling of somatic mutations in expressed genes." Gut. (2017).

Epitope: APCmut
Chemical type: Peptide, no natural source
Sequence: NQTTQEADSANTLQIAEIKEKIGTRSAKIL
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: APCmut
Chemical type: Peptide, no natural source
Sequence: NQTTQEADSANTLQIAEIKEKIGTRSAKIL
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: APCmut
Chemical type: Peptide, no natural source
Sequence: NQTTQEADSANTLQIAEIKEKIGTRSAKIL
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: APCmut
Chemical type: Peptide, no natural source
Sequence: NQTTQEADSANTLQIAEIKEKIGTRSAKIL
Assay category: TCell
Result: Negative
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: APCmut
Chemical type: Peptide, no natural source
Sequence: NQTTQEADSANTLQIAEIKEKIGTRSAKIL
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Xu Lu; Lin Yang; Daxing Yao; Xuan Wu; Jingpo Li; Xuesong Liu; Lijuan Deng; Caiting Huang; Yue Wang; Dan Li; Jingwei Liu. "Tumor antigen-specific CD8<sup>+</sup> T cells are negatively regulated by PD-1 and Tim-3 in human gastric cancer." Cellular immunology (2017).

Epitope: NY-ESO-1 157–170
Chemical type: Peptide from protein
Sequence: SLLMWITQCFLPVF
Position: 157-170
Source molecule (GenBank): P78358.1
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: NY-ESO-1 157–170
Chemical type: Peptide from protein
Sequence: SLLMWITQCFLPVF
Position: 157-170
Source molecule (GenBank): P78358.1
Assay category: TCell
Result: Positive-High
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NY-ESO-1 157–170
Chemical type: Peptide from protein
Sequence: SLLMWITQCFLPVF
Position: 157-170
Source molecule (GenBank): P78358.1
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NY-ESO-1 157–170
Chemical type: Peptide from protein
Sequence: SLLMWITQCFLPVF
Position: 157-170
Source molecule (GenBank): P78358.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NY-ESO-1 157–170
Chemical type: Peptide from protein
Sequence: SLLMWITQCFLPVF
Position: 157-170
Source molecule (GenBank): P78358.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NY-ESO-1 157–170
Chemical type: Peptide from protein
Sequence: SLLMWITQCFLPVF
Position: 157-170
Source molecule (GenBank): P78358.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NY-ESO-1 157–170
Chemical type: Peptide from protein
Sequence: SLLMWITQCFLPVF
Position: 157-170
Source molecule (GenBank): P78358.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: NY-ESO-1 157–170
Chemical type: Peptide from protein
Sequence: SLLMWITQCFLPVF
Position: 157-170
Source molecule (GenBank): P78358.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Nicki Yh Leung; Christine Yy Wai; Marco Hk Ho; Ruiwu Liu; Kit S Lam; Jin Jun Wang; Shang An Shu; Ka Hou Chu; Patrick Sc Leung. "Screening and identification of mimotopes of the major shrimp allergen tropomyosin using one-bead-one-compound peptide libraries." Cellular & molecular immunology (2017).

Epitope: HDGIPDWSM
Chemical type: Peptide, no natural source
Sequence: HDGIPDWSM
Assay category: BCell
Result: Positive
Host:  4-54 years

Epitope: RTIPTMHWIH
Chemical type: Peptide, no natural source
Sequence: RTIPTMHWIH
Assay category: BCell
Result: Positive
Host:  4-54 years

Epitope: TKYERGGRVRKI
Chemical type: Peptide, no natural source
Sequence: TKYERGGRVRKI
Assay category: BCell
Result: Positive
Host:  4-54 years

Epitope: PTDVERKTSYTL
Chemical type: Peptide, no natural source
Sequence: PTDVERKTSYTL
Assay category: BCell
Result: Positive
Host:  4-54 years
Reference: Flavia Chiuppesi; Teodora Kaltcheva; Zhuo Meng; Peter A Barry; Don J Diamond; Felix Wussow. "Identification of a Continuous Neutralizing Epitope within UL128 of Human Cytomegalovirus." Journal of virology (2017).

Epitope: Peptide 35 (UL128 137-151)
Chemical type: Peptide from protein
Sequence: YDKITRIVGLDQYLE
Position: 137-151
Source molecule (GenBank): ABA86622.1
Assay category: BCell
Result: Positive-Low

Epitope: Peptide 38 (UL128 149-163)
Chemical type: Peptide from protein
Sequence: YLESVKKHKRLDVCR
Position: 149-163
Source molecule (GenBank): ABA86622.1
Assay category: BCell
Result: Positive-High

Epitope: Peptide 39 (UL128 153-167)
Chemical type: Peptide from protein
Sequence: VKKHKRLDVCRAKMG
Position: 153-167
Source molecule (GenBank): ABA86622.1
Assay category: BCell
Result: Positive-High

Epitope: Peptide 4 (UL128 13-27)
Chemical type: Peptide from protein
Sequence: LWLLLDHSRVPRVRA
Position: 13-27
Source molecule (GenBank): AKI25262.1
Assay category: BCell
Result: Negative

Epitope: Peptide 11 (UL128 41-55)
Chemical type: Peptide from protein
Sequence: ERCYDFKMCNRFTVA
Position: 41-55
Source molecule (GenBank): ADE62337.1
Assay category: BCell
Result: Negative

Epitope: Peptide 22 (UL128 85-99)
Chemical type: Peptide from protein
Sequence: TRQVVHNKLTSCNYN
Position: 85-99
Source molecule (GenBank): AKI25262.1
Assay category: BCell
Result: Negative
Reference: Emily N Gallichotte; Vineet D Menachery; Boyd L Yount; Douglas G Widman; Kenneth H Dinnon; Steven Hartman; Aravinda M de Silva; Ralph S Baric. "Epitope Addition and Ablation via Manipulation of a Dengue Virus Serotype 1 Infectious Clone." mSphere (2017).

Epitope: mAb 2D22
Chemical type: Region on multi-chain protein
Discontinuous residues: A: N347, T348, T349, T350, A351, S352, R353, C354, W381, G382, N383, G384, I393, K527; C: V589, Q605, E607, D642, S643
Source molecule (GenBank): AES93099.1
Assay category: BCell
Result: Positive

Epitope: mAb 2D22
Chemical type: Region on multi-chain protein
Discontinuous residues: A: N347, T348, T349, T350, A351, S352, R353, C354, W381, G382, N383, G384, I393, K527; C: V589, Q605, E607, D642, S643
Source molecule (GenBank): AES93099.1
Assay category: BCell
Result: Positive

Epitope: mAb 5H2
Chemical type: Discontinuous protein residues
Discontinuous residues: V235, T236, A237, M238, S243, S245, V246, E247, V248, K249, P251, D252, G254, E255, K366, R368
Source molecule (GenBank): AAN38667.1
Assay category: BCell
Result: Positive

Epitope: mAb 5H2
Chemical type: Discontinuous protein residues
Discontinuous residues: V235, T236, A237, M238, S243, S245, V246, E247, V248, K249, P251, D252, G254, E255, K366, R368
Source molecule (GenBank): AAN38667.1
Assay category: BCell
Result: Positive

Epitope: mAb 5H2
Chemical type: Discontinuous protein residues
Discontinuous residues: V235, T236, A237, M238, S243, S245, V246, E247, V248, K249, P251, D252, G254, E255, K366, R368
Source molecule (GenBank): AAN38667.1
Assay category: BCell
Result: Positive

Epitope: mAb 5H2
Chemical type: Discontinuous protein residues
Discontinuous residues: V235, T236, A237, M238, S243, S245, V246, E247, V248, K249, P251, D252, G254, E255, K366, R368
Source molecule (GenBank): AAN38667.1
Assay category: BCell
Result: Positive

Epitope: mAb E103
Chemical type: Discontinuous protein residues
Discontinuous residues: T303, G328, T329, D330, P332
Source molecule (GenBank): AAF03887.1
Assay category: BCell
Result: Positive

Epitope: mAb E103
Chemical type: Discontinuous protein residues
Discontinuous residues: T303, G328, T329, D330, P332
Source molecule (GenBank): AAF03887.1
Assay category: BCell
Result: Positive
Reference: Eun Joo Chung; Young-Il Jeong; Myoung-Ro Lee; Yu Jung Kim; Sang-Eun Lee; Shin-Hyeong Cho; Won-Ja Lee; Mi-Yeoun Park; Jung-Won Ju. "Heat shock proteins 70 and 90 from Clonorchis sinensis induce Th1 response and stimulate antibody production." Parasites & vectors (2017).

Epitope: CsProP peptide
Chemical type: Peptide from protein
Sequence: DAPVPKSGGPDAPVPKSGGPDAPVPKSGG
Position: 25-53
Source molecule (GenBank): AAK35165.1
Assay category: BCell
Result: Positive

Epitope: CsProP peptide
Chemical type: Peptide from protein
Sequence: DAPVPKSGGPDAPVPKSGGPDAPVPKSGG
Position: 25-53
Source molecule (GenBank): AAK35165.1
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Huixing Lin; Zhe Ma; Xin Hou; Lei Chen; Hongjie Fan. "Construction and immunogenicity of a recombinant swinepox virus expressing a multi-epitope peptide for porcine reproductive and respiratory syndrome virus." Scientific reports (2017).

Epitope: A1-30
Chemical type: Peptide, no natural source
Sequence: YSTNWKNLSSLS
Assay category: BCell
Result: Positive
Host: F 4 weeks
Reference: Anthony DiPiazza; Katherine Richards; Nicholas Poulton; Andrea J Sant. "Avian and Human Seasonal Influenza Hemagglutinin Proteins Elicit CD4 T Cell Responses That Are Comparable in Epitope Abundance and Diversity." Clinical and vaccine immunology :  CVI. (2017).

Epitope: H3 aa321
Chemical type: Peptide from protein
Sequence: CPRYVKQNTLKLATGMR
Position: 321-337
Source molecule (GenBank): AAZ79974.1
Assay category: TCell
Result: Positive
Host:  3-8 months
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: H3 aa321
Chemical type: Peptide from protein
Sequence: CPRYVKQNTLKLATGMR
Position: 321-337
Source molecule (GenBank): AAZ79974.1
Assay category: TCell
Result: Positive
Host:  3-8 months
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: H7 aa156
Chemical type: Peptide from protein
Sequence: AEMKWLLSNTDNAAFPQ
Position: 156-172
Source molecule (GenBank): AHN96472.1
Assay category: TCell
Result: Positive
Host:  3-8 months
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: H7 aa271
Chemical type: Peptide from protein
Sequence: GKSMGIQSGVQVDANCE
Position: 271-287
Source molecule (GenBank): AHZ60096.1
Assay category: TCell
Result: Positive-Low
Host:  3-8 months
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo
Reference: Lucy M De La Cruz; Elizabeth S McDonald; R Mick; Jashodeep Datta; Nadia F Nocera; Shuwen Xu; Carla S Fisher; Brian J Czerniecki. "Anti-HER2 CD4<sup>+</sup> T-Helper Type 1 Immune Response is Superior to Breast MRI for Assessing Response to Neoadjuvant Therapy in Patients with HER2-Positive Breast Cancer." Annals of surgical oncology (2017).

Epitope: p328
Chemical type: Peptide from protein
Sequence: TQRCEKCSKPCARVCYGL
Position: 328-345
Source molecule (GenBank): P04626.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Qingbo Liu; Priyamvada Acharya; Michael A Dolan; Peng Zhang; Christina Guzzo; Jacky Lu; Alice Kwon; Deepali Gururani; Huiyi Miao; Tatsiana Bylund; Gwo-Yu Chuang; Aliaksandr Druz; Tongqing Zhou; William J Rice; Christoph Wigge; Bridget Carragher; Clinton S Potter; Peter D Kwong; Paolo Lusso. "Quaternary contact in the initial interaction of CD4 with the HIV-1 envelope trimer." Nature structural & molecular biology (2017).

Epitope: Epitope of PGT145 Fab on HIV-1 env gp120
Chemical type: Discontinuous protein residues
Discontinuous residues: D158
Source molecule (GenBank): Q2N0S6.1
Assay category: BCell
Result: Positive

Epitope: Epitope of PGT145 Fab on HIV-1 env gp120
Chemical type: Discontinuous protein residues
Discontinuous residues: D158
Source molecule (GenBank): Q2N0S6.1
Assay category: BCell
Result: Positive
Reference: Erica Ollmann Saphire; Marinieve Montero; Alfredo Menendez; Nienke E van Houten; Melita B Irving; Ralph Pantophlet; Michael B Zwick; Paul W H I Parren; Dennis R Burton; Jamie K Scott; Ian A Wilson. "Structure of a high-affinity "mimotope" peptide bound to HIV-1-neutralizing antibody b12 explains its inability to elicit gp120 cross-reactive antibodies." Journal of molecular biology (2007).

Epitope: B2.1 peptide
Chemical type: Peptide, no natural source
Sequence: HERSYMFSDLENRCIAAEAKK
Assay category: BCell
Result: Positive
Quantitative measurement: 1.8
Host: M 31 years

Epitope: B2.1 peptide
Chemical type: Peptide, no natural source
Sequence: HERSYMFSDLENRCIAAEAKK
Assay category: BCell
Result: Positive
Quantitative measurement: 5000.0
Host: M 31 years

Epitope: B2.1 peptide
Chemical type: Peptide, no natural source
Sequence: HERSYMFSDLENRCIAAEAKK
Assay category: BCell
Result: Positive
Quantitative measurement: 20.0
Host: M 31 years

Epitope: B2.1 peptide
Chemical type: Peptide, no natural source
Sequence: HERSYMFSDLENRCIAAEAKK
Assay category: BCell
Result: Positive
Host: M 31 years