LiteFold/IEDB huggingface dataset:
Reference: Keishi Yamaguchi; Itsuki Anzai; Ryota Maeda; Maiko Moriguchi; Tokiko Watanabe; Akihiro Imura; Akifumi Takaori-Kondo; Tsuyoshi Inoue. "Structural insights into the rational design of a nanobody that binds with high affinity to the SARS-CoV-2 spike variant." Journal of biochemistry (2023).

Epitope: Epitope of nanobody P17 on SARS-CoV-2 Alpha RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: G443, Y446, L449, T467, I469, G479, V480, E481, G482, F487, L489, Q490, S491, Q495, Y498
Source molecule (GenBank): QWE88920.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.0034
Host:  19 months

Epitope: Epitope of nanobody P17 on SARS-CoV-2 Alpha RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: G443, Y446, L449, T467, I469, G479, V480, E481, G482, F487, L489, Q490, S491, Q495, Y498
Source molecule (GenBank): QWE88920.1
Assay category: BCell
Result: Positive
Quantitative measurement: 1.7
Host:  19 months

Epitope: Epitope of nanobody P17 on SARS-CoV-2 Alpha RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: G443, Y446, L449, T467, I469, G479, V480, E481, G482, F487, L489, Q490, S491, Q495, Y498
Source molecule (GenBank): QWE88920.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.37
Host:  19 months

Epitope: Epitope of nanobody P17 on SARS-CoV-2 Alpha RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: G443, Y446, L449, T467, I469, G479, V480, E481, G482, F487, L489, Q490, S491, Q495, Y498
Source molecule (GenBank): QWE88920.1
Assay category: BCell
Result: Positive
Quantitative measurement: 21000000
Host:  19 months

Epitope: Epitope of nanobody P17 on SARS-CoV-2 Alpha RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: G443, Y446, L449, T467, I469, G479, V480, E481, G482, F487, L489, Q490, S491, Q495, Y498
Source molecule (GenBank): QWE88920.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.0051
Host:  19 months

Epitope: Epitope of nanobody P17 on SARS-CoV-2 Alpha RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: G443, Y446, L449, T467, I469, G479, V480, E481, G482, F487, L489, Q490, S491, Q495, Y498
Source molecule (GenBank): QWE88920.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.87
Host:  19 months

Epitope: Epitope of nanobody P17 on SARS-CoV-2 Alpha RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: G443, Y446, L449, T467, I469, G479, V480, E481, G482, F487, L489, Q490, S491, Q495, Y498
Source molecule (GenBank): QWE88920.1
Assay category: BCell
Result: Positive
Quantitative measurement: 11000000
Host:  19 months
Reference: Yuzhu Zhang; Shilpa R Bhardwaj; Ana Vilches; Andrew Breksa; Shu-Chen Lyu; Sharon Chinthrajah; Kari C Nadeau; Tengchuan Jin. "IgE binding epitope mapping with TL1A tagged peptides." Molecular immunology (2023).

Epitope: Ara h 2_ peptide 2
Chemical type: Peptide from protein
Sequence: GDRRCQSQLERANLRP
Position: 29-44
Source molecule (GenBank): AAN77576.1
Assay category: BCell
Result: Positive

Epitope: Ara h 2_ peptide 2
Chemical type: Peptide from protein
Sequence: GDRRCQSQLERANLRP
Position: 29-44
Source molecule (GenBank): AAN77576.1
Assay category: BCell
Result: Negative

Epitope: Ara h 2_ peptide 9
Chemical type: Peptide from protein
Sequence: DRRGAGSSQHQERCCN
Position: 90-105
Source molecule (GenBank): AAN77576.1
Assay category: BCell
Result: Positive

Epitope: Ara h 2_ peptide 9
Chemical type: Peptide from protein
Sequence: DRRGAGSSQHQERCCN
Position: 90-105
Source molecule (GenBank): AAN77576.1
Assay category: BCell
Result: Negative

Epitope: Ara h 2_ peptide 19
Chemical type: Peptide from protein
Sequence: RCDLDVESGGRDRY
Position: 147-160
Source molecule (GenBank): A0A445BYI5.1
Assay category: BCell
Result: Negative

Epitope: Ara h 2_ peptide 19
Chemical type: Peptide from protein
Sequence: RCDLDVESGGRDRY
Position: 147-160
Source molecule (GenBank): A0A445BYI5.1
Assay category: BCell
Result: Negative
Reference: Fernando Corvillo; Brent S Abel; Alberto López-Lera; Giovanni Ceccarini; Silvia Magno; Ferruccio Santini; David Araújo-Vilar; Rebecca J Brown; Pilar Nozal; Margarita López-Trascasa. "Characterization and Clinical Association of Autoantibodies Against Perilipin 1 in Patients With Acquired Generalized Lipodystrophy." Diabetes (2023).

Epitope: PLIN1 353-373
Chemical type: Peptide from protein
Sequence: APAAVLGMAGRVLHLTPAPA
Position: 353-372
Source molecule (GenBank): NP_002657.3
Assay category: BCell
Result: Positive

Epitope: PLIN1 353-373
Chemical type: Peptide from protein
Sequence: APAAVLGMAGRVLHLTPAPA
Position: 353-372
Source molecule (GenBank): NP_002657.3
Assay category: BCell
Result: Negative

Epitope: PLIN1 398-405
Chemical type: Peptide from protein
Sequence: VVHYVPLP
Position: 398-405
Source molecule (GenBank): NP_002657.3
Assay category: BCell
Result: Positive

Epitope: PLIN1 398-405
Chemical type: Peptide from protein
Sequence: VVHYVPLP
Position: 398-405
Source molecule (GenBank): NP_002657.3
Assay category: BCell
Result: Positive
Reference: Lei Feng; Yong-Yu Gao; Mingwei Sun; Zi-Bin Li; Qiang Zhang; Jie Yang; Cui Qiao; Hang Jin; Hong-Sheng Feng; Yu-Han Xian; Jianxun Qi; George F Gao; William J Liu; Feng-Shan Gao. "The Parallel Presentation of Two Functional CTL Epitopes Derived from the O and Asia 1 Serotypes of Foot-and-Mouth Disease Virus and Swine SLA-2*HB01: Implications for Universal Vaccine Development." Cells (2022).

Epitope: 3D314
Chemical type: Peptide from protein
Sequence: VLYALRRHY
Position: 2177-2185
Source molecule (GenBank): ACX54401.1
Assay category: TCell
Result: Negative
Host:  1 month
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Yongxiang Zhao; Baochao Fan; Junbiao Xue; Rongli Guo; Jizhong Li; Jinzhu Zhou; Xu Song; Xuehan Zhang; Shengce Tao; Bin Li. "Characterization and epitope mapping of monoclonal antibodies against PEDV N protein." Virology (2023).

Epitope: PEDV Nucleocapsid 350-357
Chemical type: Peptide from protein
Sequence: TYNYKMTV
Position: 350-357
Source molecule (GenBank): AFC98507.1
Assay category: BCell
Result: Positive

Epitope: PEDV Nucleocapsid 350-357
Chemical type: Peptide from protein
Sequence: TYNYKMTV
Position: 350-357
Source molecule (GenBank): AFC98507.1
Assay category: BCell
Result: Positive

Epitope: PEDV Nucleocapsid 350-357
Chemical type: Peptide from protein
Sequence: TYNYKMTV
Position: 350-357
Source molecule (GenBank): AFC98507.1
Assay category: BCell
Result: Positive
Reference: Nami Tateyama; Teizo Asano; Hiroyuki Suzuki; Guanjie Li; Takeo Yoshikawa; Tomohiro Tanaka; Mika K Kaneko; Yukinari Kato. "Epitope Mapping of Anti-Mouse CCR3 Monoclonal Antibodies Using Flow Cytometry." Antibodies (Basel, Switzerland) (2022).

Epitope: C<sub>3</sub>Mab-4 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: A2,F3,T5
Source molecule (GenBank): P51678.2
Assay category: BCell
Result: Positive

Epitope: C<sub>3</sub>Mab-4 epitope
Chemical type: Discontinuous protein residues
Discontinuous residues: A2,F3,T5
Source molecule (GenBank): P51678.2
Assay category: BCell
Result: Positive
Reference: Mayank Srivastava; Richard Copin; Augustine Choy; Anbo Zhou; Olav Olsen; Sarah Wolf; Darshit Shah; Anna Rye-Weller; Lisa Chen; Newton Chan; Angel Coppola; Kathryn Lanza; Nicole Negron; Min Ni; Gurinder S Atwal; Christos A Kyratsous; William Olson; Robert Salzler. "Proteogenomic identification of Hepatitis B virus (HBV) genotype-specific HLA-I restricted peptides from HBV-positive patient liver tissues." Frontiers in immunology (2022).

Epitope: ENITSGFLGPL
Chemical type: Peptide from protein
Sequence: ENITSGFLGPL
Position: 2-12
Source molecule (GenBank): AGP13139.1
Assay category: MhcLigandElution
Result: Positive

Epitope: FVGLSPTVWL
Chemical type: Peptide from protein
Sequence: FVGLSPTVWL
Position: 357-366
Source molecule (GenBank): Q76R62.2
Assay category: MhcLigandElution
Result: Positive

Epitope: FVGLSPTVWL
Chemical type: Peptide from protein
Sequence: FVGLSPTVWL
Position: 357-366
Source molecule (GenBank): Q76R62.2
Assay category: MhcLigandElution
Result: Positive

Epitope: GTLPQEHIVQK
Chemical type: Peptide from protein
Sequence: GTLPQEHIVQK
Position: 604-614
Source molecule (GenBank): Q69028.2
Assay category: MhcLigandElution
Result: Positive

Epitope: TASPISSIF
Chemical type: Peptide from protein
Sequence: TASPISSIF
Position: 157-165
Source molecule (GenBank): Q76R62.2
Assay category: MhcLigandElution
Result: Positive
Reference: Nikole L Warner; Susan B Core; Kathryn M Frietze. "Unbiased Identification of Dengue Virus Non-Structural Protein 1 Peptides for Use in Vaccine Design." Vaccines (2022).

Epitope: PEP 031-45
Chemical type: Peptide from protein
Sequence: QYKFQPESPSKLASA
Position: 31-45
Source molecule (GenBank): NP_739584.2
Assay category: BCell
Result: Positive

Epitope: PEP 031-45
Chemical type: Peptide from protein
Sequence: QYKFQPESPSKLASA
Position: 31-45
Source molecule (GenBank): NP_739584.2
Assay category: BCell
Result: Positive

Epitope: PEP 211-225
Chemical type: Peptide from protein
Sequence: KIEKASFIEVKNCHW
Position: 211-225
Source molecule (GenBank): NP_739584.2
Assay category: BCell
Result: Positive

Epitope: PEP 211-225
Chemical type: Peptide from protein
Sequence: KIEKASFIEVKNCHW
Position: 211-225
Source molecule (GenBank): NP_739584.2
Assay category: BCell
Result: Positive
Reference: David Langan; Ruipeng Wang; Keshanti Tidwell; Selome Mitiku; Alison Farrell; Catrina Johnson; Adam Parks; Lauren Suarez; Shweta Jain; Sojung Kim; Kristi Jones; Mathias Oelke; Jerome Zeldis. "AIM™ platform: A new immunotherapy approach for viral diseases." Frontiers in medicine (2022).

Epitope: Tax SFH
Chemical type: Peptide from protein
Sequence: SFHSLHLLF
Position: 301-309
Source molecule (GenBank): AAG31572.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Jin Li; Te Liang; Ailian Hei; Xiangbin Wang; Huijun Li; Xiaobo Yu; Rui Zhao; Peng Gao; Cong Fang; Ji Zhou; Maogang Li; Ellen He; Sven Skog. "Novel neutralizing chicken IgY antibodies targeting 17 potent conserved peptides identified by SARS-CoV-2 proteome microarray, and future prospects." Frontiers in immunology (2022).

Epitope: NSP 1003
Chemical type: Peptide from protein
Sequence: TLCFTLKRKTE
Position: 111-121
Source molecule (GenBank): P0DTC7.1
Assay category: BCell
Result: Positive
Host:  25 weeks

Epitope: NSP 1003
Chemical type: Peptide from protein
Sequence: TLCFTLKRKTE
Position: 111-121
Source molecule (GenBank): P0DTC7.1
Assay category: BCell
Result: Positive
Host:  25 weeks
Reference: Yongli Wang; Minghui Gao; Xiaoying Li; Wenshuai Zhu; Mengchun Zhao; Jiayue Li; Xiaomeng Liu; Letian Cao; Songrui Li; Sumei Zhang; Longxian Zhang; Shuhua Fan. "Structural Analyses of a Dominant Cryptosporidium parvum Epitope Presented by H-2K<sup>b</sup> Offer New Options To Combat Cryptosporidiosis." mBio (2023).

Epitope: SVF9
Chemical type: Peptide from protein
Sequence: SVFAIFAAL
Position: 315-323
Source molecule (GenBank): AAL07532.1
Assay category: TCell
Result: Positive-High
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: SVF9
Chemical type: Peptide from protein
Sequence: SVFAIFAAL
Position: 315-323
Source molecule (GenBank): AAL07532.1
Assay category: TCell
Result: Positive-Low
Host: F 6-8 weeks

Epitope: SVF9
Chemical type: Peptide from protein
Sequence: SVFAIFAAL
Position: 315-323
Source molecule (GenBank): AAL07532.1
Assay category: TCell
Result: Positive-High
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: SVF9
Chemical type: Peptide from protein
Sequence: SVFAIFAAL
Position: 315-323
Source molecule (GenBank): AAL07532.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: SVF9
Chemical type: Peptide from protein
Sequence: SVFAIFAAL
Position: 315-323
Source molecule (GenBank): AAL07532.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: SVF9
Chemical type: Peptide from protein
Sequence: SVFAIFAAL
Position: 315-323
Source molecule (GenBank): AAL07532.1
Assay category: TCell
Result: Positive
Host: F 6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: SVF9
Chemical type: Peptide from protein
Sequence: SVFAIFAAL
Position: 315-323
Source molecule (GenBank): AAL07532.1
Assay category: MhcBinding
Result: Positive

Epitope: SVF9
Chemical type: Peptide from protein
Sequence: SVFAIFAAL
Position: 315-323
Source molecule (GenBank): AAL07532.1
Assay category: MhcBinding
Result: Positive

Epitope: SVF9
Chemical type: Peptide from protein
Sequence: SVFAIFAAL
Position: 315-323
Source molecule (GenBank): AAL07532.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.36
Reference: Alina Serrano-Quintero; Alfonso Sequeda-Juárez; C Angélica Pérez-Hernández; Sara M Sosa-Delgado; Alfonso Mendez-Tenorio; Eva Ramón-Gallegos. "Immunogenic analysis of epitope-based vaccine candidate induced by photodynamic therapy in MDA-MB-231 triple-negative breast cancer cells." Photodiagnosis and photodynamic therapy (2022).

Epitope: CALR
Chemical type: Peptide from protein
Sequence: KSGTIFDNF
Position: 107-115
Source molecule (GenBank): K7EL50
Assay category: TCell
Result: Positive
Cell type: THP-1 cell (monocyte)
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Karin Schmidt; Matthias Leisegang; Peter-Michael Kloetzel. "ERAP2 supports TCR recognition of three immunotherapy targeted tumor epitopes." Molecular immunology (2023).

Epitope: Tyr 369–377
Chemical type: Peptide from protein
Sequence: YMNGTMSQV
Position: 369-377
Source molecule (GenBank): P14679.3
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Engineered

Epitope: gp100 209-217
Chemical type: Peptide from protein
Sequence: ITDQVPFSV
Position: 209-217
Source molecule (GenBank): Q06154.2
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Engineered

Epitope: Mart-1 26/27-35
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Engineered
Reference: Abby Foster; Pushpak Bhattacharjee; Eleonora Tresoldi; Miha Pakusch; Fergus J Cameron; Stuart I Mannering. "Glutamine deamidation does not increase the immunogenicity of C-peptide in people with type 1 diabetes." Journal of translational autoimmunity (2023).

Epitope: Insulin (65-75)
Chemical type: Peptide from protein
Sequence: QVELGGGPGAG
Position: 65-75
Source molecule (GenBank): P01308.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Engineered

Epitope: Insulin (65-75)
Chemical type: Peptide from protein
Sequence: QVELGGGPGAG
Position: 65-75
Source molecule (GenBank): P01308.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Engineered

Epitope: Insulin (65-75)
Chemical type: Peptide from protein
Sequence: QVELGGGPGAG
Position: 65-75
Source molecule (GenBank): P01308.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Engineered

Epitope: Insulin (65-75)
Chemical type: Peptide from protein
Sequence: QVELGGGPGAG
Position: 65-75
Source molecule (GenBank): P01308.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Engineered
Reference: Felix Sebastian Nettersheim; Yanal Ghosheh; Holger Winkels; Kouji Kobiyama; Christopher Durant; Sujit Silas Armstrong; Simon Brunel; Payel Roy; Thamotharampillai Dileepan; Marc K Jenkins; Dirk M Zajonc; Klaus Ley. "Single-cell transcriptomes and T cell receptors of vaccine-expanded apolipoprotein B-specific T cells." Frontiers in cardiovascular medicine (2022).

Epitope: ApoB peptide P6
Chemical type: Peptide from protein
Sequence: TGAYSNASSTESASY
Position: 978-992
Source molecule (GenBank): E9Q414.1
Assay category: TCell
Result: Positive
Host: F 7 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo
Reference: Jiahui Guo; Yihan Lu; Xiaoqing He; Jiashu Li; Chenling Fan; Hongmei Zhang; Weiping Teng; Zhongyan Shan; Jing Li. "Determination of the Predictive Roles and Potentially Pathogenic Antigen Epitopes of α-Enolase Related to the Development of Miscarriage in Females with Autoimmune Thyroiditis." International journal of molecular sciences (2023).

Epitope: P1
Chemical type: Peptide from protein
Sequence: ILKIHAREIFDSRGNP
Position: 3-18
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F

Epitope: P1
Chemical type: Peptide from protein
Sequence: ILKIHAREIFDSRGNP
Position: 3-18
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F

Epitope: P3
Chemical type: Peptide from protein
Sequence: TSKGLFRAAVPSGAS
Position: 26-40
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F

Epitope: P3
Chemical type: Peptide from protein
Sequence: TSKGLFRAAVPSGAS
Position: 26-40
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F

Epitope: P9
Chemical type: Peptide from protein
Sequence: FRSGKYDLDFKSPDDPSRY
Position: 252-270
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F

Epitope: P9
Chemical type: Peptide from protein
Sequence: FRSGKYDLDFKSPDDPSRY
Position: 252-270
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F

Epitope: P10
Chemical type: Peptide from protein
Sequence: FKSPDDPSRYISPDQL
Position: 261-276
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F

Epitope: P10
Chemical type: Peptide from protein
Sequence: FKSPDDPSRYISPDQL
Position: 261-276
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F

Epitope: P12
Chemical type: Peptide from protein
Sequence: QDDWGAWQKFTASAGI
Position: 298-313
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F

Epitope: P12
Chemical type: Peptide from protein
Sequence: QDDWGAWQKFTASAGI
Position: 298-313
Source molecule (GenBank): P06733.2
Assay category: BCell
Result: Positive
Host: F
Reference: Jinxing Song; Mengxiang Wang; Yongkun Du; Bo Wan; Angke Zhang; Yuhang Zhang; Guoqing Zhuang; Pengchao Ji; Yanan Wu; Gaiping Zhang. "Identification of a linear B-cell epitope on the African swine fever virus CD2v protein." International journal of biological macromolecules (2023).

Epitope: K205R-peptide
Chemical type: Peptide from protein
Sequence: VMTDTKIQLG
Position: 72-81
Source molecule (GenBank): YP_009927172.1
Assay category: BCell
Result: Negative
Reference: Filippo Bianchini; Virginia Crivelli; Morgan E Abernathy; Concetta Guerra; Martin Palus; Jonathan Muri; Harold Marcotte; Antonio Piralla; Mattia Pedotti; Raoul De Gasparo; Luca Simonelli; Milos Matkovic; Chiara Toscano; Maira Biggiogero; Veronica Calvaruso; Pavel Svoboda; Tomás Cervantes Rincón; Tommaso Fava; Lucie Podešvová; Akanksha A Shanbhag; Andrea Celoria; Jacopo Sgrignani; Michal Stefanik; Vaclav Hönig; Veronika Pranclova; Tereza Michalcikova; Jan Prochazka; Giuditta Guerrini; Dora Mehn; Annalisa Ciabattini; Hassan Abolhassani; David Jarrossay; Mariagrazia Uguccioni; Donata Medaglini; Qiang Pan-Hammarström; Luigi Calzolai; Daniel Fernandez; Fausto Baldanti; Alessandra Franzetti-Pellanda; Christian Garzoni; Radislav Sedlacek; Daniel Ruzek; Luca Varani; Andrea Cavalli; Christopher O Barnes; Davide F Robbiani. "Human neutralizing antibodies to cold linear epitopes and subdomain 1 of the SARS-CoV-2 spike glycoprotein." Science immunology (2023).

Epitope: HKU1 fusion peptide
Chemical type: Peptide from protein
Sequence: SSRSLLEDLLFNKVKLSDV
Position: 903-921
Source molecule (GenBank): UJH59888.1
Assay category: BCell
Result: Positive

Epitope: HKU1 fusion peptide
Chemical type: Peptide from protein
Sequence: SSRSLLEDLLFNKVKLSDV
Position: 903-921
Source molecule (GenBank): UJH59888.1
Assay category: BCell
Result: Positive
Reference: Simson Tarigan; N L P Indi Dharmayanti; Dianita Sugiartanti; Ryandini Putri; Andriani; Harimurti Nuradji; Marthino Robinson; Niniek Wiendayanthi; Fadjry Djufri. "Characterization of two linear epitopes SARS CoV-2 spike protein formulated in tandem repeat." PloS one (2023).

Epitope: S14P5
Chemical type: Peptide from protein
Sequence: TESNKKFLPFQQFGRDIAD
Position: 553-571
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Host: M 8 months

Epitope: S14P5
Chemical type: Peptide from protein
Sequence: TESNKKFLPFQQFGRDIAD
Position: 553-571
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Host: M 8 months

Epitope: S14P5
Chemical type: Peptide from protein
Sequence: TESNKKFLPFQQFGRDIAD
Position: 553-571
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Reference: W H Dawe; D R Kapczynski; E G Linnemann; V R Gauthiersloan; H S Sellers. "Analysis of the Immune Response and Identification of Antibody Epitopes Against the Sigma C Protein of Avian Orthoreovirus Following Immunization with Live or Inactivated Vaccines." Avian diseases (2022).

Epitope: Sigma C 239-249
Chemical type: Peptide from protein
Sequence: VTTSPATLVFE
Position: 239-249
Source molecule (GenBank): WBQ85153.1
Assay category: BCell
Result: Positive
Host:  4 weeks

Epitope: Sigma C 266-279
Chemical type: Peptide from protein
Sequence: CYGFQQATFPVDIS
Position: 266-279
Source molecule (GenBank): WBQ85153.1
Assay category: BCell
Result: Positive
Host:  4 weeks

Epitope: Sigma C 109-121
Chemical type: Peptide from protein
Sequence: DHGSSIASLQKEV
Position: 109-121
Source molecule (GenBank): WBQ85153.1
Assay category: BCell
Result: Positive
Host:  4 weeks

Epitope: Sigma C (94826) 292-301
Chemical type: Peptide from protein
Sequence: YGTYTSSRVF
Position: 292-301
Source molecule (GenBank): WBQ85153.1
Assay category: BCell
Result: Positive
Host:  4 weeks
Reference: Maarten E Emmelot; Martijn Vos; Mardi C Boer; Nynke Y Rots; Cécile A C M van Els; Patricia Kaaijk. "SARS-CoV-2 Omicron BA.4/BA.5 Mutations in Spike Leading to T Cell Escape in Recently Vaccinated Individuals." Viruses (2022).

Epitope: S 141-155 (BA4/BA.5)
Chemical type: Peptide from protein
Sequence: LDVYYHKNNKSWMES
Position: 136-150
Source molecule (GenBank): UUB67350.1
Assay category: TCell
Result: Positive
Host:  23-39 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: S 431-445
Chemical type: Peptide from protein
Sequence: GCVIAWNSNNLDSKV
Position: 431-445
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Host:  23-39 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: S 469-483
Chemical type: Peptide from protein
Sequence: STEIYQAGSTPCNGV
Position: 469-483
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Host:  23-39 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: S 484-498 (BA4/BA.5)
Chemical type: Peptide from protein
Sequence: AGVNCYFPLRSYGFR
Position: 481-495
Source molecule (GenBank): USH47308.1
Assay category: TCell
Result: Positive-Low
Host:  23-39 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated