LiteFold/IEDB huggingface dataset:
Reference: Julien Schmidt; Johanna Chiffelle; Marta A S Perez; Morgane Magnin; Sara Bobisse; Marion Arnaud; Raphael Genolet; Julien Cesbron; David Barras; Blanca Navarro Rodrigo; Fabrizio Benedetti; Alexandra Michel; Lise Queiroz; Petra Baumgaertner; Philippe Guillaume; Michael Hebeisen; Olivier Michielin; Tu Nguyen-Ngoc; Florian Huber; Melita Irving; Stéphanie Tissot-Renaud; Brian J Stevenson; Sylvie Rusakiewicz; Denarda Dangaj Laniti; Michal Bassani-Sternberg; Nathalie Rufer; David Gfeller; Lana E Kandalaft; Daniel E Speiser; Vincent Zoete; George Coukos; Alexandre Harari. "Neoantigen-specific CD8 T cells with high structural avidity preferentially reside in and eliminate tumors." Nature communications (2023).

Epitope: GP100
Chemical type: Peptide from protein
Sequence: ITDQVPFSV
Position: 209-217
Source molecule (GenBank): P40967.2
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: GP100
Chemical type: Peptide from protein
Sequence: ITDQVPFSV
Position: 209-217
Source molecule (GenBank): P40967.2
Assay category: TCell
Result: Positive
Host: M 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: GP100
Chemical type: Peptide from protein
Sequence: ITDQVPFSV
Position: 209-217
Source molecule (GenBank): P40967.2
Assay category: TCell
Result: Positive
Host: M 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: GP100
Chemical type: Peptide from protein
Sequence: ITDQVPFSV
Position: 209-217
Source molecule (GenBank): P40967.2
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: ZCCHC11
Chemical type: Peptide, no natural source
Sequence: GRKLFGTHF
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: ZCCHC11
Chemical type: Peptide, no natural source
Sequence: GRKLFGTHF
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: MAGE A1
Chemical type: Peptide from protein
Sequence: KVLEYVIKV
Position: 278-286
Source molecule (GenBank): P43355.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: hCMV pp65 (123-131)
Chemical type: Peptide from protein
Sequence: IPSINVHHY
Position: 123-131
Source molecule (GenBank): ADV04400.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: hCMV pp65 (123-131)
Chemical type: Peptide from protein
Sequence: IPSINVHHY
Position: 123-131
Source molecule (GenBank): ADV04400.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Gabriel Duette; Eunok Lee; Gabriela Martins Costa Gomes; Katie Tungatt; Chloe Doyle; Vicki V Stylianou; Ashley Lee; Susan Maddocks; Janette Taylor; Rajiv Khanna; Rowena A Bull; Marianne Martinello; Kerrie J Sandgren; Anthony L Cunningham; Sarah Palmer. "Highly Networked SARS-CoV-2 Peptides Elicit T Cell Responses with Enhanced Specificity." ImmunoHorizons (2023).

Epitope: Nucleocapsid 262-270_RTA
Chemical type: Peptide from protein
Sequence: RTATKAYNV
Position: 262-270
Source molecule (GenBank): P0DTC9.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Nucleocapsid 262-270_RTA
Chemical type: Peptide from protein
Sequence: RTATKAYNV
Position: 262-270
Source molecule (GenBank): P0DTC9.1
Assay category: TCell
Result: Positive
Host:  24-81 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Nucleocapsid 262-270_RTA
Chemical type: Peptide from protein
Sequence: RTATKAYNV
Position: 262-270
Source molecule (GenBank): P0DTC9.1
Assay category: TCell
Result: Positive
Host:  24-81 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Nucleocapsid 262-270_RTA
Chemical type: Peptide from protein
Sequence: RTATKAYNV
Position: 262-270
Source molecule (GenBank): P0DTC9.1
Assay category: TCell
Result: Positive
Host:  24-81 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Nucleocapsid 262-270_RTA
Chemical type: Peptide from protein
Sequence: RTATKAYNV
Position: 262-270
Source molecule (GenBank): P0DTC9.1
Assay category: TCell
Result: Positive
Host:  24-81 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Nucleocapsid 262-270_RTA
Chemical type: Peptide from protein
Sequence: RTATKAYNV
Position: 262-270
Source molecule (GenBank): P0DTC9.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Liang-Qing Dong; Li-Hua Peng; Li-Jie Ma; Dong-Bing Liu; Shu Zhang; Shu-Zhen Luo; Jun-Hua Rao; Hong-Wen Zhu; Shuai-Xi Yang; Shui-Jun Xi; Min Chen; Fan-Fan Xie; Fu-Qiang Li; Wen-Hui Li; Chen Ye; Li-Ya Lin; Yu-Jue Wang; Xiao-Ying Wang; Da-Ming Gao; Hu Zhou; Huan-Ming Yang; Jian Wang; Shi-da Zhu; Xiang-Dong Wang; Ya Cao; Jian Zhou; Jia Fan; Kui Wu; Qiang Gao. "Heterogeneous immunogenomic features and distinct escape mechanisms in multifocal hepatocellular carcinoma." Journal of hepatology (2020).

Epitope: ESR2
Chemical type: Peptide, no natural source
Sequence: GQKQFIHLK
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: ESR2
Chemical type: Peptide, no natural source
Sequence: GQKQFIHLK
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: OR5M1
Chemical type: Peptide, no natural source
Sequence: FFFGHLSF
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: OR5M1
Chemical type: Peptide, no natural source
Sequence: FFFGHLSF
Assay category: TCell
Result: Positive-High
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: OR6Y1
Chemical type: Peptide, no natural source
Sequence: YFFLSHHSF
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: OR6Y1
Chemical type: Peptide, no natural source
Sequence: YFFLSHHSF
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: UGP2
Chemical type: Peptide, no natural source
Sequence: MSRFVQGLSK
Assay category: TCell
Result: Negative
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: UGP2
Chemical type: Peptide, no natural source
Sequence: MSRFVQGLSK
Assay category: TCell
Result: Positive-High
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Jonas S Heitmann; Claudia Tandler; Maddalena Marconato; Annika Nelde; Timorshah Habibzada; Susanne M Rittig; Christian M Tegeler; Yacine Maringer; Simon U Jaeger; Monika Denk; Marion Richter; Melek T Oezbek; Karl-Heinz Wiesmüller; Jens Bauer; Jonas Rieth; Marcel Wacker; Sarah M Schroeder; Naomi Hoenisch Gravel; Jonas Scheid; Melanie Märklin; Annika Henrich; Boris Klimovich; Kim L Clar; Martina Lutz; Samuel Holzmayer; Sebastian Hörber; Andreas Peter; Christoph Meisner; Imma Fischer; Markus W Löffler; Caroline Anna Peuker; Stefan Habringer; Thorsten O Goetze; Elke Jäger; Hans-Georg Rammensee; Helmut R Salih; Juliane S Walz. "Phase I/II trial of a peptide-based COVID-19 T-cell activator in patients with B-cell deficiency." Nature communications (2023).

Epitope: P6_ORF8
Chemical type: Peptide from protein
Sequence: SKWYIRVGARKSAPL
Position: 43-57
Source molecule (GenBank): P0DTC8.1
Assay category: TCell
Result: Positive
Host:  37-90 years
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: P6_ORF8
Chemical type: Peptide from protein
Sequence: SKWYIRVGARKSAPL
Position: 43-57
Source molecule (GenBank): P0DTC8.1
Assay category: TCell
Result: Negative
Host:  37-90 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: P6_ORF8
Chemical type: Peptide from protein
Sequence: SKWYIRVGARKSAPL
Position: 43-57
Source molecule (GenBank): P0DTC8.1
Assay category: TCell
Result: Positive
Host:  37-90 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: P6_ORF8
Chemical type: Peptide from protein
Sequence: SKWYIRVGARKSAPL
Position: 43-57
Source molecule (GenBank): P0DTC8.1
Assay category: TCell
Result: Positive
Host:  37-90 years
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Seisuke Kusano; Sho Ueda; Daisuke Oryoji; Aya Toyoumi; Akiko Hashimoto-Tane; Hiroyuki Kishi; Hiroshi Hamana; Atsushi Muraguchi; Hui Jin; Hisashi Arase; Hiroko Miyadera; Reiko Kishikawa; Yasunobu Yoshikai; Hisakata Yamada; Ken Yamamoto; Yasuharu Nishimura; Takashi Saito; Takehiko Sasazuki; Shigeyuki Yokoyama. "Contributions of the N-terminal flanking residues of an antigenic peptide from the Japanese cedar pollen allergen Cry j 1 to the T-cell activation by HLA-DP5." International immunology (2023).

Epitope: NF[K(P–3)E]-pCj1
Chemical type: Peptide, no natural source
Sequence: DESMKVTVAFNQF
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: NF[K(P–3)E]-pCj1
Chemical type: Peptide, no natural source
Sequence: DESMKVTVAFNQF
Assay category: MhcBinding
Result: Positive
Reference: Shiva Emami; Thiago Rojas Converso; Jenny J Persson; Bengt Johansson-Lindbom. "Insertion of an immunodominant T helper cell epitope within the Group A  M protein promotes an IFN-γ-dependent shift from a non-protective to a protective immune response." Frontiers in immunology (2023).

Epitope: 2W peptide
Chemical type: Peptide, no natural source
Sequence: EAWGALANWAVDSA
Assay category: TCell
Result: Positive
Host: F 8-12 weeks
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo
Reference: Bei Zhang; Zhiyao Ren; Jianfu Zhao; Yue Zhu; Boya Huang; Chanchan Xiao; Yan Zhang; Jieping Deng; Lipeng Mao; Lei Tang; Dan Lan; Lijuan Gao; Hongyi Zhang; Guobing Chen; Oscar Junhong Luo. "Global analysis of HLA-A2 restricted MAGE-A3 tumor antigen epitopes and corresponding TCRs in non-small cell lung cancer." Theranostics (2023).

Epitope: MAGE-A3-Mp2
Chemical type: Peptide from protein
Sequence: FLWGPRALV
Position: 271-279
Source molecule (GenBank): P43357.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: MAGE-A3-Mp2
Chemical type: Peptide from protein
Sequence: FLWGPRALV
Position: 271-279
Source molecule (GenBank): P43357.1
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: MAGE-A3-Mp2
Chemical type: Peptide from protein
Sequence: FLWGPRALV
Position: 271-279
Source molecule (GenBank): P43357.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: MAGE-A3-Mp2
Chemical type: Peptide from protein
Sequence: FLWGPRALV
Position: 271-279
Source molecule (GenBank): P43357.1
Assay category: MhcBinding
Result: Positive

Epitope: MAGE-A3-Mp10
Chemical type: Peptide from protein
Sequence: GNWQYFFPV
Position: 141-149
Source molecule (GenBank): P43357.1
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: MAGE-A3-Mp10
Chemical type: Peptide from protein
Sequence: GNWQYFFPV
Position: 141-149
Source molecule (GenBank): P43357.1
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: MAGE-A3-Mp10
Chemical type: Peptide from protein
Sequence: GNWQYFFPV
Position: 141-149
Source molecule (GenBank): P43357.1
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: MAGE-A3-Mp10
Chemical type: Peptide from protein
Sequence: GNWQYFFPV
Position: 141-149
Source molecule (GenBank): P43357.1
Assay category: MhcBinding
Result: Positive
Reference: Xinyu Wang; Yongxin Hu; Hongkai Tan; Xiang Dong; Shuchen Zhang; Siqi Fu; Jinyan Gao; Hongbing Chen; Guanghui Liu; Xin Li. "Glutamine and lysine as common residues from epitopes on α-lactalbumin and β-lactoglobulin from cow milk identified by phage display technology." Journal of dairy science (2023).

Epitope: A-IgE12
Chemical type: Peptide, no natural source
Sequence: DSSPEFWASAVG
Assay category: BCell
Result: Positive
Host:  3-9 years
Reference: Justin A Spanier; Vivian Fung; Christine M Wardell; Mohannad H Alkhatib; Yixin Chen; Linnea A Swanson; Alexander J Dwyer; Matthew E Weno; Nubia Silva; Jason S Mitchell; Paul C Orban; Majid Mojibian; C Bruce Verchere; Brian T Fife; Megan K Levings. "Tregs with an MHC class II peptide-specific chimeric antigen receptor prevent autoimmune diabetes in mice." The Journal of clinical investigation (2023).

Epitope: WT InsB<sub>10-23</sub>
Chemical type: Peptide from protein
Sequence: HLVEALYLVCGERG
Position: 34-47
Source molecule (GenBank): P01308.1
Assay category: BCell
Result: Positive
Reference: Glaivy Batsuli; Jasmine Ito; Elizabeth S York; Courtney Cox; Wallace Baldwin; Surinder Gill; Pete Lollar; Shannon L Meeks. "Factor VIII antibody immune complexes modulate the humoral response to factor VIII in an epitope-dependent manner." Frontiers in immunology (2023).

Epitope: Epitope of mAb 2-116
Chemical type: Discontinuous protein residues
Discontinuous residues: E30, L31, S32, W33, D34, E72, F73, T74, D75, H76, L77, F78, N79, I80, A81, K82, P83, R84, P85, P86, W87, M88, G89, L90, L91, G92, P93, T94, I95, Q96, A97
Source molecule (GenBank): P00451.1
Assay category: BCell
Result: Positive
Host:  9-12 weeks

Epitope: Epitope of mAb 2-116
Chemical type: Discontinuous protein residues
Discontinuous residues: E30, L31, S32, W33, D34, E72, F73, T74, D75, H76, L77, F78, N79, I80, A81, K82, P83, R84, P85, P86, W87, M88, G89, L90, L91, G92, P93, T94, I95, Q96, A97
Source molecule (GenBank): P00451.1
Assay category: BCell
Result: Positive
Host:  9-12 weeks
Reference: Sabin Acharya; Ahreum Lee; Hyunjin Kim; Hyeong-Jin Kim; Youngnim Choi. "Requirements for anti-aquaporin 5 autoantibody production in a mouse model." Molecular oral microbiology (2023).

Epitope: AQP5E-L
Chemical type: Peptide from protein
Sequence: VGIYFTGCSMNPARSFG
Position: 175-191
Source molecule (GenBank): P55064.1
Assay category: BCell
Result: Positive-Low
Host: F 6-8 weeks

Epitope: AQP5E-L
Chemical type: Peptide from protein
Sequence: VGIYFTGCSMNPARSFG
Position: 175-191
Source molecule (GenBank): P55064.1
Assay category: BCell
Result: Positive-Low
Host: F 6-8 weeks

Epitope: AQP5E-L
Chemical type: Peptide from protein
Sequence: VGIYFTGCSMNPARSFG
Position: 175-191
Source molecule (GenBank): P55064.1
Assay category: BCell
Result: Positive-Low
Host: F 6-8 weeks

Epitope: AQP5E-L
Chemical type: Peptide from protein
Sequence: VGIYFTGCSMNPARSFG
Position: 175-191
Source molecule (GenBank): P55064.1
Assay category: BCell
Result: Negative
Host: F 6-8 weeks

Epitope: PmE
Chemical type: Peptide, no natural source
Sequence: GCSVNPARSFG
Assay category: BCell
Result: Positive-Low
Host: F 6-8 weeks

Epitope: PmE
Chemical type: Peptide, no natural source
Sequence: GCSVNPARSFG
Assay category: BCell
Result: Positive-Intermediate
Host: F 6-8 weeks

Epitope: PmE
Chemical type: Peptide, no natural source
Sequence: GCSVNPARSFG
Assay category: BCell
Result: Negative
Host: F 6-8 weeks

Epitope: OTII-AQP5E
Chemical type: Spliced peptide from proteins
Position: 326-338
Source molecule (GenBank): P01012.2
Assay category: BCell
Result: Positive
Host: F 6-8 weeks

Epitope: OTII-AQP5E
Chemical type: Spliced peptide from proteins
Position: 326-338
Source molecule (GenBank): P01012.2
Assay category: BCell
Result: Positive-High
Host: F 6-8 weeks

Epitope: AQP5A
Chemical type: Peptide from protein
Sequence: WPSALPT
Position: 35-41
Source molecule (GenBank): P55064.1
Assay category: BCell
Result: Negative
Host: F 6-8 weeks

Epitope: AQP5A
Chemical type: Peptide from protein
Sequence: WPSALPT
Position: 35-41
Source molecule (GenBank): P55064.1
Assay category: BCell
Result: Negative
Host: F 6-8 weeks

Epitope: AQP5A
Chemical type: Peptide from protein
Sequence: WPSALPT
Position: 35-41
Source molecule (GenBank): P55064.1
Assay category: BCell
Result: Negative
Host: F 6-8 weeks
Reference: Kewin Rodríguez-Obediente; Yoelis Yepes-Pérez; Daniel Benavides-Ortiz; Diana Díaz-Arévalo; César Reyes; Gabriela Arévalo-Pinzón; Manuel Alfonso Patarroyo. "Invasion-inhibitory peptides chosen by natural selection analysis as an antimalarial strategy." Molecular immunology (2023).

Epitope: 42898
Chemical type: Peptide from protein
Sequence: YMEKYDIEKVHGSGIRVDLG
Position: 58-77
Source molecule (GenBank): WBY57263.1
Assay category: BCell
Result: Positive

Epitope: 42903
Chemical type: Peptide, no natural source
Sequence: RYSSNDANNENQPFSFTPEK
Assay category: BCell
Result: Positive
Reference: Diahann T S L Jansen; Monique T A de Beijer; Robbie J Luijten; Kitty Kwappenberg; Anna-Sophia Wiekmeijer; Amy L Kessler; Roel F A Pieterman; Rachid Bouzid; Willem-Jan Krebber; Robert A de Man; Cornelis J M Melief; Sonja I Buschow. "Induction of broad multifunctional CD8+ and CD4+ T cells by hepatitis B virus antigen-based synthetic long peptides ." Frontiers in immunology (2023).

Epitope: SLP2
Chemical type: Peptide from protein
Sequence: HYFQTRHYLHTLWKAGILYKRETTR
Position: 140-164
Source molecule (GenBank): BAA85339.1
Assay category: TCell
Result: Positive
Host:  24-70 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Peptide 16
Chemical type: Peptide from protein
Sequence: EFGATVELL
Position: 8-16
Source molecule (GenBank): ARS23767.1
Assay category: TCell
Result: Negative
Host: M 28-36 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Peptide 16
Chemical type: Peptide from protein
Sequence: EFGATVELL
Position: 8-16
Source molecule (GenBank): ARS23767.1
Assay category: TCell
Result: Negative
Host: M 28-36 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Peptide 16
Chemical type: Peptide from protein
Sequence: EFGATVELL
Position: 8-16
Source molecule (GenBank): ARS23767.1
Assay category: TCell
Result: Negative
Host: M 28-36 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: Peptide 16
Chemical type: Peptide from protein
Sequence: EFGATVELL
Position: 8-16
Source molecule (GenBank): ARS23767.1
Assay category: TCell
Result: Negative
Host: M 28-36 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Jigyasa Verma; Neha Kaushal; Manish Manish; Naidu Subbarao; Venera Shakirova; Ekaterina Martynova; Rongzeng Liu; Shaimaa Hamza; Albert A Rizvanov; Svetlana F Khaiboullina; Manoj Baranwal. "Identification of conserved immunogenic peptides of SARS-CoV-2 nucleocapsid protein." Journal of biomolecular structure & dynamics (2024).

Epitope: peptide N3
Chemical type: Peptide from protein
Sequence: ARSKQRRPQGLPNNTASWF
Position: 35-53
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Positive
Host:  mean: 43.6 years

Epitope: peptide N3
Chemical type: Peptide from protein
Sequence: ARSKQRRPQGLPNNTASWF
Position: 35-53
Source molecule (GenBank): P0DTC9.1
Assay category: BCell
Result: Negative
Host:  mean: 44.8 years
Reference: Brandon Mistretta; Sakuni Rankothgedera; Micah Castillo; Mitchell Rao; Kimberly Holloway; Anjana Bhardwaj; Maha El Noafal; Constance Albarracin; Randa El-Zein; Hengameh Rezaei; Xiaoping Su; Rehan Akbani; Xiaoshan M Shao; Brian J Czerniecki; Rachel Karchin; Isabelle Bedrosian; Preethi H Gunaratne. "Chimeric RNAs reveal putative neoantigen peptides for developing tumor vaccines for breast cancer." Frontiers in immunology (2023).

Epitope: NSFP1-LRRC37A2 neo P5
Chemical type: Peptide, no natural source
Sequence: IKPKFPRK
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Menglin Wang; Benoit Rousseau; Kunyu Qiu; Guannan Huang; Yu Zhang; Hang Su; Christine Le Bihan-Benjamin; Ines Khati; Oliver Artz; Michael B Foote; Yung-Yi Cheng; Kuo-Hsiung Lee; Michael Z Miao; Yue Sun; Philippe-Jean Bousquet; Marc Hilmi; Elise Dumas; Anne-Sophie Hamy; Fabien Reyal; Lin Lin; Paul M Armistead; Wantong Song; Ava Vargason; Janelle C Arthur; Yun Liu; Jianfeng Guo; Xuefei Zhou; Juliane Nguyen; Yongqun He; Jenny P-Y Ting; Aaron C Anselmo; Leaf Huang. "Killing tumor-associated bacteria with a liposomal antibiotic generates neoantigens that induce anti-tumor immune responses." Nature biotechnology (2024).

Epitope: Peptide 4
Chemical type: Peptide from protein
Sequence: MPIYQTSTF
Position: 27-35
Source molecule (GenBank): Q8L0X4.1
Assay category: TCell
Result: Positive
Host:  6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide 4
Chemical type: Peptide from protein
Sequence: MPIYQTSTF
Position: 27-35
Source molecule (GenBank): Q8L0X4.1
Assay category: TCell
Result: Negative
Host:  6-8 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Peptide 13
Chemical type: Peptide from protein
Sequence: LADDNFSTI
Position: 641-649
Source molecule (GenBank): Q8RES2.1
Assay category: TCell
Result: Positive-High
Host:  6-8 weeks
Cell type: T cell CD8+
Tissue: colon
Culture conditions: Direct Ex Vivo

Epitope: Peptide 13
Chemical type: Peptide from protein
Sequence: LADDNFSTI
Position: 641-649
Source molecule (GenBank): Q8RES2.1
Assay category: TCell
Result: Positive
Host:  6-8 weeks
Cell type: T cell CD8+
Tissue: colon
Culture conditions: Direct Ex Vivo

Epitope: Peptide 13
Chemical type: Peptide from protein
Sequence: LADDNFSTI
Position: 735-743
Source molecule (GenBank): Q8R429.1
Assay category: TCell
Result: Positive-High
Host:  6-8 weeks
Cell type: T cell CD8+
Tissue: colon
Culture conditions: Direct Ex Vivo

Epitope: Peptide 13
Chemical type: Peptide from protein
Sequence: LADDNFSTI
Position: 735-743
Source molecule (GenBank): Q8R429.1
Assay category: TCell
Result: Positive
Host:  6-8 weeks
Cell type: T cell CD8+
Tissue: colon
Culture conditions: Direct Ex Vivo