Reference: Gustaf Ahlén; Antony Chen; Barbara Roe; Tina Falkeborn; Lars Frelin; William W Hall; Matti Sällberg; Jonas Söderholm. "Limited effect on NS3-NS4A protein cleavage after alanine substitutions within the immunodominant HLA-A2-restricted epitope of the hepatitis C virus genotype 3a non-structural 3/4A protease." The Journal of general virology (2012).

Epitope: 1062
Chemical type: Peptide from protein
Sequence: LSTATQTFLGTTVGGVMWTV
Position: 36-55
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Positive

Epitope: 1087
Chemical type: Peptide from protein
Sequence: SRTLAGTKHPALQMYTNVDQ
Position: 61-80
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1107
Chemical type: Peptide from protein
Sequence: DLVGWPAPPGAKSLEPCTCG
Position: 81-100
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1167
Chemical type: Peptide from protein
Sequence: GPVMCPAGHVAGIFRAAVCT
Position: 141-160
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Positive

Epitope: 1187
Chemical type: Peptide from protein
Sequence: RGVAKALQFIPVETLSTQAR
Position: 161-180
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1212
Chemical type: Peptide from protein
Sequence: DNSTPPAVPQSYQVGYLHAP
Position: 186-205
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1287
Chemical type: Peptide from protein
Sequence: TGAKLTYSTYGKFLADGGCS
Position: 261-280
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1352
Chemical type: Peptide from protein
Sequence: PGSITVPHSNIEEVALGSEG
Position: 326-345
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1362
Chemical type: Peptide from protein
Sequence: IEEVALGSEGEIPFYGKAIP
Position: 336-355
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1402
Chemical type: Peptide from protein
Sequence: EVASKLRGMGLNAVAYYRGL
Position: 376-395
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1522
Chemical type: Peptide from protein
Sequence: DTGCSWYDLQPAETTVRLRA
Position: 496-515
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1557
Chemical type: Peptide from protein
Sequence: FWESVFTGLTHIDAHFLSQT
Position: 531-550
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: 1577
Chemical type: Peptide from protein
Sequence: KQQGLNFSYLTAYQATVCAR
Position: 551-570
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: QTFLGTTVGG
Chemical type: Peptide from protein
Sequence: QTFLGTTVGG
Position: 41-50
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: TFLGTTVGGV
Chemical type: Peptide from protein
Sequence: TFLGTTVGGV
Position: 42-51
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Positive

Epitope: LGTTVGGVMW
Chemical type: Peptide from protein
Sequence: LGTTVGGVMW
Position: 44-53
Source molecule (GenBank): AFI98116.1
Assay category: MhcBinding
Result: Negative

Epitope: LVLNPSVAA
Chemical type: Peptide from protein
Sequence: LVLNPSVAA
Position: 226-234
Source molecule (GenBank): AFI98116.1
Assay category: TCell
Result: Negative
Host:  6-12 weeks
Cell type: T cell
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: VLNPSVAAT
Chemical type: Peptide from protein
Sequence: VLNPSVAAT
Position: 227-235
Source molecule (GenBank): AFI98116.1
Assay category: TCell
Result: Negative
Host:  6-12 weeks
Cell type: T cell
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: FMSRAYGID
Chemical type: Peptide from protein
Sequence: FMSRAYGID
Position: 241-249
Source molecule (GenBank): AFI98116.1
Assay category: TCell
Result: Negative
Host:  6-12 weeks
Cell type: T cell
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: MSRAYGIDP
Chemical type: Peptide from protein
Sequence: MSRAYGIDP
Position: 242-250
Source molecule (GenBank): AFI98116.1
Assay category: TCell
Result: Negative
Host:  6-12 weeks
Cell type: T cell
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: PPAVPQSYQ
Chemical type: Peptide from protein
Sequence: PPAVPQSYQ
Position: 190-198
Source molecule (GenBank): AFI98116.1
Assay category: TCell
Result: Negative
Host:  6-12 weeks
Cell type: T cell
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: LSTPGLPVC
Chemical type: Peptide from protein
Sequence: LSTPGLPVC
Position: 517-525
Source molecule (GenBank): AFI98116.1
Assay category: TCell
Result: Negative
Host:  6-12 weeks
Cell type: T cell
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: HGPTPLLYR
Chemical type: Peptide from protein
Sequence: HGPTPLLYR
Position: 593-601
Source molecule (GenBank): AFI98116.1
Assay category: TCell
Result: Negative
Host:  6-12 weeks
Cell type: T cell
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: AVGGVMWTV
Chemical type: Peptide from protein
Sequence: AVGGVMWTV
Position: 1079-1087
Source molecule (GenBank): ACZ60112.1
Assay category: MhcBinding
Result: Positive