LiteFold/IEDB huggingface dataset:
Reference: Yassmin Musthaffa; Emma E Hamilton-Williams; Hendrik J Nel; Anne-Sophie Bergot; Ahmed M Mehdi; Mark Harris; Ranjeny Thomas. "Proinsulin-specific T-cell responses correlate with estimated c-peptide and predict partial remission duration in type 1 diabetes." Clinical & translational immunology (2021).

Epitope: PI 48-62
Chemical type: Peptide from protein
Sequence: PGAGSLQPLALEGSL
Position: 72-86
Source molecule (GenBank): NP_000198.1
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: PI 48-62
Chemical type: Peptide from protein
Sequence: PGAGSLQPLALEGSL
Position: 72-86
Source molecule (GenBank): NP_000198.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: PI 48-62
Chemical type: Peptide from protein
Sequence: PGAGSLQPLALEGSL
Position: 72-86
Source molecule (GenBank): NP_000198.1
Assay category: TCell
Result: Positive-High
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Anastasia A Minervina; Mikhail V Pogorelyy; Allison M Kirk; Jeremy Chase Crawford; E Kaitlynn Allen; Ching-Heng Chou; Robert C Mettelman; Kim J Allison; Chun-Yang Lin; David C Brice; Xun Zhu; Kasi Vegesana; Gang Wu; Sanchit Trivedi; Pratibha Kottapalli; Daniel Darnell; Suzanne McNeely; Scott R Olsen; Stacey Schultz-Cherry; Jeremie H Estepp; Maureen A McGargill; Joshua Wolf; Paul G Thomas. "SARS-CoV-2 antigen exposure history shapes phenotypes and specificity of memory CD8<sup>+</sup> T cells." Nature immunology (2022).

Epitope: A24_QYI
Chemical type: Peptide from protein
Sequence: QYIKWPWYI
Position: 1208-1216
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: A24_QYI
Chemical type: Peptide from protein
Sequence: QYIKWPWYI
Position: 1208-1216
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: B44_VEN
Chemical type: Peptide from protein
Sequence: VENPHLMGWD
Position: 5001-5010
Source molecule (GenBank): P0DTD1.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: B44_VEN
Chemical type: Peptide from protein
Sequence: VENPHLMGWD
Position: 5001-5010
Source molecule (GenBank): P0DTD1.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Dapeng Sun; Zhe Sang; Yong Joon Kim; Yufei Xiang; Tomer Cohen; Anna K Belford; Alexis Huet; James F Conway; Ji Sun; Derek J Taylor; Dina Schneidman-Duhovny; Cheng Zhang; Wei Huang; Yi Shi. "Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes." Nature communications (2021).

Epitope: Epitope of nanobody Nb34 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: Y369, N370, S371, A372, F374, S375, T376, F377, K378, R408, N437
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.63
Host: M

Epitope: Epitope of nanobody Nb34 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: Y369, N370, S371, A372, F374, S375, T376, F377, K378, R408, N437
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Host: M

Epitope: Epitope of nanobody Nb34 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: Y369, N370, S371, A372, F374, S375, T376, F377, K378, R408, N437
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Host: M

Epitope: Epitope of nanobody Nb105 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: Y369, N370, S371, A372, F374, S375, T376, F377, K378, R408, N437
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Host: M

Epitope: Epitope of nanobody Nb105 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: Y369, N370, S371, A372, F374, S375, T376, F377, K378, R408, N437
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Host: M

Epitope: Epitope of nanobody Nb105 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: Y369, N370, S371, A372, F374, S375, T376, F377, K378, R408, N437
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Host: M

Epitope: Epitope of nanobody Nb105 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: Y369, N370, S371, A372, F374, S375, T376, F377, K378, R408, N437
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.97
Host: M

Epitope: Epitope of nanobody Nb105 on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: Y369, N370, S371, A372, F374, S375, T376, F377, K378, R408, N437
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive
Quantitative measurement: 3.76
Host: M
Reference: Chao Liang; Hongliang Liu; Jingming Zhou; Yumei Chen; Peiyang Ding; Xifang Zhu; Mengmeng Wang; Menghao Ding; Aiping Wang. "Development of a monoclonal antibody against PRRSV glycoprotein 3 using an immuodominant peptide as immunogen." International journal of biological macromolecules (2021).

Epitope: GP3-P12
Chemical type: Peptide from protein
Sequence: FGIGNVSQVYVDIKHQFI
Position: 127-144
Source molecule (GenBank): AKZ66193.1
Assay category: BCell
Result: Negative

Epitope: GP3-P18
Chemical type: Peptide from protein
Sequence: LEWLRPFFSSWLVLNVSW
Position: 181-198
Source molecule (GenBank): AKZ66193.1
Assay category: BCell
Result: Negative
Reference: Hao Sun; Zhenhua Lu; Guoyun Xuan; Ning Liu; Tianhu Wang; Yang Liu; Mingfu Lan; Jiahao Xu; Yuancai Feng; Shuang Xu; Yuchen Lu; Baozeng Sun; Jinpeng Zhang; Xiyang Zhang; Yuanjie Sun; Shuya Yang; Yun Zhang; Yusi Zhang; Linfeng Cheng; Dongbo Jiang; Kun Yang. "Integrative Analysis of HTNV Glycoprotein Derived MHC II Epitopes by  Prediction and Experimental Validation." Frontiers in cellular and infection microbiology (2021).

Epitope: Hantaan Virus Glycoprotein 444-458
Chemical type: Peptide from protein
Sequence: TKTLVIGQCIYTITS
Position: 444-458
Source molecule (GenBank): P16853.1
Assay category: TCell
Result: Positive
Host: F 
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Bruno Araujo Soares; Kádima Nayara Teixeira; Juliana Ferreira de Santana; Bianca Luiza Melo de Assis; Cristiane Zocatelli-Ribeiro; João Paulo Stanke Scandelari; Vanete Thomaz-Soccol; Ricardo Andrez Machado-de-Ávila; Larissa Magalhães Alvarenga; Juliana de Moura. "Epitope mapping from Mycobacterium leprae proteins: Convergent data from in silico and in vitro approaches for serodiagnosis of leprosy." Molecular immunology (2021).

Epitope: Ag85B SAFSRPGLPVEYLQV
Chemical type: Peptide from protein
Sequence: SAFSRPGLPVEYLQV
Position: 37-51
Source molecule (GenBank): CAA43269.1
Assay category: BCell
Result: Positive

Epitope: ML2055 PGAPVSSEAQPGDPN
Chemical type: Peptide from protein
Sequence: PGAPVSSEAQPGDPN
Position: 64-78
Source molecule (GenBank): P46842.2
Assay category: BCell
Result: Positive-Low
Reference: Ranran Shi; Yubing Li; Ling Ran; Yu Dong; Xiuman Zhou; Jingwen Tang; Lu Han; Mingshuang Wang; Liwei Pang; Yuanming Qi; Yahong Wu; Yanfeng Gao. "Screening and identification of HLA-A2-restricted neoepitopes for immunotherapy of non-microsatellite instability-high colorectal cancer." Science China. Life sciences (2022).

Epitope: P11
Chemical type: Peptide, no natural source
Sequence: MNQRPILTII
Assay category: MhcBinding
Result: Negative

Epitope: P14
Chemical type: Peptide, no natural source
Sequence: CMGGMNQRP
Assay category: MhcBinding
Result: Negative

Epitope: P16
Chemical type: Peptide, no natural source
Sequence: QLTITSLSL
Assay category: MhcBinding
Result: Negative

Epitope: P29
Chemical type: Peptide, no natural source
Sequence: LVVVGACGV
Assay category: MhcBinding
Result: Negative

Epitope: P36
Chemical type: Peptide, no natural source
Sequence: CLHGASCLDGV
Assay category: MhcBinding
Result: Negative

Epitope: P41
Chemical type: Peptide, no natural source
Sequence: KLVVVGADGV
Assay category: MhcBinding
Result: Negative

Epitope: P62
Chemical type: Peptide, no natural source
Sequence: YTQSEMEFL
Assay category: MhcBinding
Result: Negative
Reference: Patricia Kaaijk; Maarten E Emmelot; Jeroen Kerkhof; Cécile A C M van Els; Hugo D Meiring; Jelle de Wit; Rogier Bodewes. "Genetic Analysis Reveals Differences in CD8<sup>+</sup> T Cell Epitope Regions That May Impact Cross-Reactivity of Vaccine-Induced T Cells against Wild-Type Mumps Viruses." Vaccines (2021).

Epitope: MuV-V/P/I-17-25
Chemical type: Peptide from protein
Sequence: GMNVANHFL
Position: 17-25
Source molecule (GenBank): AAK60057.1
Assay category: MhcLigandElution
Result: Negative

Epitope: MuV-M-120-128
Chemical type: Peptide from protein
Sequence: ASDKEQILF
Position: 120-128
Source molecule (GenBank): AAA46612.1
Assay category: MhcLigandElution
Result: Negative

Epitope: MuV-F-445-453
Chemical type: Peptide from protein
Sequence: QPIDISTEL
Position: 445-453
Source molecule (GenBank): AJD08941.1
Assay category: MhcLigandElution
Result: Negative

Epitope: MuV-HN-157-165
Chemical type: Peptide from protein
Sequence: FSIGHPLNM
Position: 157-165
Source molecule (GenBank): ANN24156.1
Assay category: MhcLigandElution
Result: Negative

Epitope: MuV-L-249-256
Chemical type: Peptide from protein
Sequence: GRLNVSSL
Position: 249-256
Source molecule (GenBank): AHI45022.1
Assay category: MhcLigandElution
Result: Positive
Epitope: 500034-204
Chemical type: Peptide from protein
Sequence: VYAMEWTSDEITVWF
Position: 204-218
Source molecule (GenBank): XP_003071481.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: 500034-204
Chemical type: Peptide from protein
Sequence: VYAMEWTSDEITVWF
Position: 204-218
Source molecule (GenBank): XP_003071481.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Qianqian Li; Jiajing Wu; Jianhui Nie; Li Zhang; Huan Hao; Shuo Liu; Chenyan Zhao; Qi Zhang; Huan Liu; Lingling Nie; Haiyang Qin; Meng Wang; Qiong Lu; Xiaoyu Li; Qiyu Sun; Junkai Liu; Linqi Zhang; Xuguang Li; Weijin Huang; Youchun Wang. "The Impact of Mutations in SARS-CoV-2 Spike on Viral Infectivity and Antigenicity." Cell (2020).

Epitope: CoV-2 S N234
Chemical type: Discontinuous protein residues
Discontinuous residues: N234
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive

Epitope: CoV-2 S N234
Chemical type: Discontinuous protein residues
Discontinuous residues: N234
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Reference: Juanjie Tang; Youri Lee; Supriya Ravichandran; Gabrielle Grubbs; Chang Huang; Charles B Stauft; Tony Wang; Basil Golding; Hana Golding; Surender Khurana. "Epitope diversity of SARS-CoV-2 hyperimmune intravenous human immunoglobulins and neutralization of variants of concern." iScience (2021).

Epitope: SARS-CoV2-548-589
Chemical type: Peptide from protein
Sequence: GTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITP
Position: 548-589
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive-Low

Epitope: SARS-CoV2-548-589
Chemical type: Peptide from protein
Sequence: GTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITP
Position: 548-589
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive

Epitope: SARS-CoV2-548-589
Chemical type: Peptide from protein
Sequence: GTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITP
Position: 548-589
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive-High

Epitope: SARS-CoV2-837-873
Chemical type: Peptide from protein
Sequence: YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQY
Position: 837-873
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive

Epitope: SARS-CoV2-880-927
Chemical type: Peptide from protein
Sequence: GTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQF
Position: 880-927
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive-Low

Epitope: SARS-CoV2-880-927
Chemical type: Peptide from protein
Sequence: GTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQF
Position: 880-927
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive-Low

Epitope: SARS-CoV2-880-927
Chemical type: Peptide from protein
Sequence: GTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQF
Position: 880-927
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Reference: Rodrigo Cañas-Arranz; Patricia de León; Sira Defaus; Elisa Torres; Mar Forner; María J Bustos; David Andreu; Esther Blanco; Francisco Sobrino. "Immunogenicity of Foot-and-Mouth Disease Virus Dendrimer Peptides: Need for a T-Cell Epitope and Ability to Elicit Heterotypic Responses." Molecules (Basel, Switzerland) (2021).

Epitope: FMDV Type C CS8-c1 VP1(140-158)
Chemical type: Peptide from protein
Sequence: YTASARGDLAHLTTTHAR
Position: 859-876
Source molecule (GenBank): CAB60267.1
Assay category: BCell
Result: Positive
Host: F 5-6 weeks
Reference: Donal T Skelly; Adam C Harding; Javier Gilbert-Jaramillo; Michael L Knight; Stephanie Longet; Anthony Brown; Sandra Adele; Emily Adland; Helen Brown; Tom Tipton; Lizzie Stafford; Alexander J Mentzer; Síle A Johnson; Ali Amini; Tiong Kit Tan; Lisa Schimanski; Kuan-Ying A Huang; Pramila Rijal; John Frater; Philip Goulder; Christopher P Conlon; Katie Jeffery; Christina Dold; Andrew J Pollard; Alex Sigal; Tulio de Oliveira; Alain R Townsend; Paul Klenerman; Susanna J Dunachie; Eleanor Barnes; Miles W Carroll; William S James. "Two doses of SARS-CoV-2 vaccination induce robust immune responses to emerging SARS-CoV-2 variants of concern." Nature communications (2021).

Epitope: P26
Chemical type: Discontinuous protein residues
Discontinuous residues: P26
Source molecule (GenBank): QHR84449.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: H69, V70
Chemical type: Discontinuous protein residues
Discontinuous residues: H69, V70
Source molecule (GenBank): QHR84449.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: H655
Chemical type: Discontinuous protein residues
Discontinuous residues: H655
Source molecule (GenBank): QHR84449.1
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Sarah A Greaves; Avinash Ravindran; Radleigh G Santos; Lan Chen; Michael T Falta; Yang Wang; Angela M Mitchell; Shaikh M Atif; Douglas G Mack; Alex N Tinega; Lisa A Maier; Shaodong Dai; Clemencia Pinilla; Johan Grunewald; Andrew P Fontenot. "CD4+ T cells in the lungs of acute sarcoidosis patients recognize an Aspergillus nidulans epitope." The Journal of experimental medicine (2021).

Epitope: PTP 283-292
Chemical type: Peptide from protein
Sequence: SGSDNKVTLW
Position: 283-292
Source molecule (GenBank): G0SA60.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: PTP 283-292
Chemical type: Peptide from protein
Sequence: SGSDNKVTLW
Position: 283-292
Source molecule (GenBank): G0SA60.2
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD4+
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: PTP 283-292
Chemical type: Peptide from protein
Sequence: SGSDNKVTLW
Position: 283-292
Source molecule (GenBank): G0SA60.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: PTP 283-292
Chemical type: Peptide from protein
Sequence: SGSDNKVTLW
Position: 283-292
Source molecule (GenBank): G0SA60.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: PTP 283-292
Chemical type: Peptide from protein
Sequence: SGSDNKVTLW
Position: 283-292
Source molecule (GenBank): G0SA60.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: PTP 283-292
Chemical type: Peptide from protein
Sequence: SGSDNKVTLW
Position: 283-292
Source molecule (GenBank): G0SA60.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: PTP 283-292
Chemical type: Peptide from protein
Sequence: SGSDNKVTLW
Position: 283-292
Source molecule (GenBank): G0SA60.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Culture conditions: Cell Line / Clone (Hybridoma)

Epitope: PTP 283-292
Chemical type: Peptide from protein
Sequence: SGSDNKVTLW
Position: 283-292
Source molecule (GenBank): G0SA60.2
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Culture conditions: Cell Line / Clone (Hybridoma)
Reference: Claudia Gandolfo; Shibily Prathyumn; Chiara Terrosi; Gabriele Anichini; Gianni Gori Savellini; Davide Corti; Luisa Bracci; Antonio Lanzavecchia; Gleyder Roman-Sosa; Maria Grazia Cusi. "Identification of a Neutralizing Epitope on TOSV Gn Glycoprotein." Vaccines (2021).

Epitope: TOSV Gn peptide 1
Chemical type: Peptide from protein
Sequence: GSDMSAFFYVNLAGQITVVKCDTNH
Position: 403-427
Source molecule (GenBank): AEM36009.1
Assay category: BCell
Result: Negative
Host: F 4 weeks

Epitope: TOSV Gn peptide 1
Chemical type: Peptide from protein
Sequence: GSDMSAFFYVNLAGQITVVKCDTNH
Position: 403-427
Source molecule (GenBank): AEM36009.1
Assay category: BCell
Result: Positive
Host: F 4 weeks

Epitope: TOSV Gn peptide 1
Chemical type: Peptide from protein
Sequence: GSDMSAFFYVNLAGQITVVKCDTNH
Position: 403-427
Source molecule (GenBank): AEM36009.1
Assay category: BCell
Result: Positive
Host: F 4 weeks

Epitope: TOSV Gn peptide 1
Chemical type: Peptide from protein
Sequence: GSDMSAFFYVNLAGQITVVKCDTNH
Position: 403-427
Source molecule (GenBank): AEM36009.1
Assay category: BCell
Result: Positive
Host: F 4 weeks

Epitope: TOSV Gn peptide 1
Chemical type: Peptide from protein
Sequence: GSDMSAFFYVNLAGQITVVKCDTNH
Position: 403-427
Source molecule (GenBank): AEM36009.1
Assay category: BCell
Result: Positive
Host: F 4 weeks

Epitope: TOSV Gn peptide 1
Chemical type: Peptide from protein
Sequence: GSDMSAFFYVNLAGQITVVKCDTNH
Position: 403-427
Source molecule (GenBank): AEM36009.1
Assay category: BCell
Result: Negative
Host: F 4 weeks

Epitope: TOSV Gn peptide 1
Chemical type: Peptide from protein
Sequence: GSDMSAFFYVNLAGQITVVKCDTNH
Position: 403-427
Source molecule (GenBank): AEM36009.1
Assay category: BCell
Result: Negative
Host: F 4 weeks
Reference: Martin Eiden; Alma Gedvilaite; Fabienne Leidel; Rainer G Ulrich; Martin H Groschup. "Vaccination with Prion Peptide-Displaying Polyomavirus-Like Particles Prolongs Incubation Time in Scrapie-Infected Mice." Viruses (2021).

Epitope: PrP1
Chemical type: Peptide from protein
Sequence: MLGSAMSRPMIHFGNDWEDRYYRENMYRYPNQVYYRP
Position: 128-164
Source molecule (GenBank): P04925.2
Assay category: BCell
Result: Positive

Epitope: PrP1
Chemical type: Peptide from protein
Sequence: MLGSAMSRPMIHFGNDWEDRYYRENMYRYPNQVYYRP
Position: 128-164
Source molecule (GenBank): P04925.2
Assay category: BCell
Result: Positive
Reference: Sapna P Patel; Gina R Petroni; Jason Roszik; Walter C Olson; Nolan A Wages; Kimberly A Chianese-Bullock; Mark Smolkin; Nikole Varhegyi; Elizabeth Gaughan; Kelly T Smith; Kathleen Haden; Emily H Hall; Sacha Gnjatic; Patrick Hwu; Craig L Slingluff. "Phase I/II trial of a long peptide vaccine (LPV7) plus toll-like receptor (TLR) agonists with or without incomplete Freund's adjuvant (IFA) for resected high-risk melanoma." Journal for immunotherapy of cancer (2021).

Epitope: gp100-17-25
Chemical type: Peptide from protein
Sequence: ALLAVGATK
Position: 17-25
Source molecule (GenBank): P40967.2
Assay category: TCell
Result: Positive
Host:  mean: 55 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Christiane S Eberhardt; Haydn T Kissick; Mihir R Patel; Maria A Cardenas; Nataliya Prokhnevska; Rebecca C Obeng; Tahseen H Nasti; Christopher C Griffith; Se Jin Im; Xu Wang; Dong M Shin; Mary Carrington; Zhuo G Chen; John Sidney; Alessandro Sette; Nabil F Saba; Andreas Wieland; Rafi Ahmed. "Functional HPV-specific PD-1<sup>+</sup> stem-like CD8 T cells in head and neck cancer." Nature (2021).

Epitope: HPV E6 52-61
Chemical type: Peptide from protein
Sequence: FAFRDLCIVY
Position: 52-61
Source molecule (GenBank): P03126
Assay category: TCell
Result: Negative
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: HPV E6 52-61
Chemical type: Peptide from protein
Sequence: FAFRDLCIVY
Position: 52-61
Source molecule (GenBank): P03126
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: other
Culture conditions: Direct Ex Vivo

Epitope: HPV E6 52-61
Chemical type: Peptide from protein
Sequence: FAFRDLCIVY
Position: 52-61
Source molecule (GenBank): P03126
Assay category: MhcBinding
Result: Positive-High
Quantitative measurement: 51.0

Epitope: HPV E6 137-144
Chemical type: Peptide from protein
Sequence: GRWTGRCM
Position: 137-144
Source molecule (GenBank): P03126
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: HPV E6 137-144
Chemical type: Peptide from protein
Sequence: GRWTGRCM
Position: 137-144
Source molecule (GenBank): P03126
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: HPV E6 137-144
Chemical type: Peptide from protein
Sequence: GRWTGRCM
Position: 137-144
Source molecule (GenBank): P03126
Assay category: MhcBinding
Result: Positive-High
Quantitative measurement: 13.0
Reference: Jeremy D Rubinstein; Xiang Zhu; Thomas Leemhuis; Giang Pham; Lorraine Ray; Sana Emberesh; Sonata Jodele; Shawn Thomas; Jose A Cancelas; Catherine M Bollard; Patrick J Hanley; Michael D Keller; Olivia Grimley; Diana Clark; Teri Clark; Cecilia S Lindestam Arlehamn; Alessandro Sette; Stella M Davies; Adam S Nelson; Michael S Grimley; Carolyn Lutzko. "Virus-specific T cells for adenovirus infection after stem cell transplantation are highly effective and class II HLA restricted." Blood advances (2021).

Epitope: hexon protein - LMYY
Chemical type: Peptide from protein
Sequence: LMYYNSTGNMGVLAG
Position: 348-362
Source molecule (GenBank): P03277.3
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Lucie Loyal; Julian Braun; Larissa Henze; Beate Kruse; Manuela Dingeldey; Ulf Reimer; Florian Kern; Tatjana Schwarz; Maike Mangold; Clara Unger; Friederike Dörfler; Shirin Kadler; Jennifer Rosowski; Kübrah Gürcan; Zehra Uyar-Aydin; Marco Frentsch; Florian Kurth; Karsten Schnatbaum; Maren Eckey; Stefan Hippenstiel; Andreas Hocke; Marcel A Müller; Birgit Sawitzki; Stefan Miltenyi; Friedemann Paul; Marcus A Mall; Holger Wenschuh; Sebastian Voigt; Christian Drosten; Roland Lauster; Nils Lachman; Leif-Erik Sander; Victor M Corman; Jobst Röhmel; Lil Meyer-Arndt; Andreas Thiel; Claudia Giesecke-Thiel. "Cross-reactive CD4<sup>+</sup> T cells enhance SARS-CoV-2 immune responses upon infection and vaccination." Science (New York, N.Y.) (2021).

Epitope: CoV-2 S P189
Chemical type: Peptide from protein
Sequence: LLQYGSFCTQLNRAL
Position: 753-767
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Short Term Restimulated