Reference: Laia Muixí; Iñaki Alvarez; Dolores Jaraquemada. "Peptides presented in vivo by HLA-DR in thyroid autoimmunity." Advances in immunology (2008).

Epitope: Complement C3 (194-208)
Chemical type: Peptide from protein
Sequence: DIPELVNMGQWKIRA
Position: 194-208
Source molecule (GenBank): NP_000055.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Complement C3 (194-208)
Chemical type: Peptide from protein
Sequence: DIPELVNMGQWKIRA
Position: 194-208
Source molecule (GenBank): NP_000055.2
Assay category: MhcBinding
Result: Positive-Low

Epitope: Complement C3 (194-208)
Chemical type: Peptide from protein
Sequence: DIPELVNMGQWKIRA
Position: 194-208
Source molecule (GenBank): NP_000055.2
Assay category: MhcBinding
Result: Positive-High

Epitope: Hemoglobin alpha chain (12-40)
Chemical type: Peptide from protein
Sequence: AAWGKVGAHAGEYGAEALERMFLSFPTTK
Position: 13-41
Source molecule (GenBank): P69905.2
Assay category: MhcLigandElution
Result: Positive

Epitope: Hemoglobin alpha chain (33-56)
Chemical type: Peptide from protein
Sequence: FLSFPTTKTYFPHFDLSHGSAQVK
Position: 34-57
Source molecule (GenBank): AAN04486.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Hemoglobin alpha chain (91-99)
Chemical type: Peptide from protein
Sequence: LRVDPVNFK
Position: 92-100
Source molecule (GenBank): AAN04486.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Hemoglobin beta chain (1-31)
Chemical type: Peptide from protein
Sequence: VHLTPEEKSAVTALWGKVNVDEVGGEALGRL
Position: 2-32
Source molecule (GenBank): AAA88069.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Alpha-1 antitripsin (189-204)
Chemical type: Peptide from protein
Sequence: TQGKIVDLVKELDRDT
Position: 189-204
Source molecule (GenBank): CAJ15161.1
Assay category: MhcLigandElution
Result: Positive

Epitope: DQB1*0602 beta chain (75-89)
Chemical type: Peptide from protein
Sequence: DVGVYRAVTPQGRPD
Position: 75-89
Source molecule (GenBank): NP_001230890.1
Assay category: MhcLigandElution
Result: Positive

Epitope: DQB1*0602 beta chain (75-89)
Chemical type: Peptide from protein
Sequence: DVGVYRAVTPQGRPD
Position: 75-89
Source molecule (GenBank): NP_001230890.1
Assay category: MhcBinding
Result: Positive

Epitope: DQB1*0602 beta chain (75-89)
Chemical type: Peptide from protein
Sequence: DVGVYRAVTPQGRPD
Position: 75-89
Source molecule (GenBank): NP_001230890.1
Assay category: MhcBinding
Result: Positive

Epitope: HLA class II, DRB3-1 cadena beta (69-79)
Chemical type: Peptide from protein
Sequence: FDSDVGEYRAV
Position: 69-79
Source molecule (GenBank): EAX03632.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Collagen alpha1 chain (XII) (2137-2154)
Chemical type: Peptide from protein
Sequence: DPSPSPVLGYKIVYKPVG
Position: 2137-2154
Source molecule (GenBank): AAC51244.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Heparan sulfate proteoglycan (462-475)
Chemical type: Peptide from protein
Sequence: GTLIIRDVKESDQG
Position: 462-475
Source molecule (GenBank): NP_005520.4
Assay category: MhcLigandElution
Result: Positive

Epitope: Nidogen-2 (NID-2) (1167-1180)
Chemical type: Peptide from protein
Sequence: SRAGLELGAEPETI
Position: 1167-1180
Source molecule (GenBank): Q14112.3
Assay category: MhcLigandElution
Result: Positive

Epitope: Cathepsin C (170-183)
Chemical type: Peptide from protein
Sequence: YDHNFVKAINAIQK
Position: 170-183
Source molecule (GenBank): AAQ08887.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Cathepsin C (170-183)
Chemical type: Peptide from protein
Sequence: YDHNFVKAINAIQK
Position: 170-183
Source molecule (GenBank): AAQ08887.1
Assay category: MhcBinding
Result: Negative

Epitope: Cathepsin C (170-183)
Chemical type: Peptide from protein
Sequence: YDHNFVKAINAIQK
Position: 170-183
Source molecule (GenBank): AAQ08887.1
Assay category: MhcBinding
Result: Positive

Epitope: Tg (2098-2112)
Chemical type: Peptide from protein
Sequence: LSSVVVDPSIRHFDV
Position: 2098-2112
Source molecule (GenBank): AAI40934.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Tg (2098-2112)
Chemical type: Peptide from protein
Sequence: LSSVVVDPSIRHFDV
Position: 2098-2112
Source molecule (GenBank): AAI40934.1
Assay category: MhcBinding
Result: Positive

Epitope: Tg (2520-2532)
Chemical type: Peptide from protein
Sequence: AKAVKQFEESQGR
Position: 2520-2532
Source molecule (GenBank): AAI40934.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Tg (2520-2532)
Chemical type: Peptide from protein
Sequence: AKAVKQFEESQGR
Position: 2520-2532
Source molecule (GenBank): AAI40934.1
Assay category: MhcBinding
Result: Positive

Epitope: BIP (67-85)
Chemical type: Peptide from protein
Sequence: AFTPEGERLIGDAAKNQLT
Position: 49-67
Source molecule (GenBank): AAF13605.1
Assay category: MhcLigandElution
Result: Positive

Epitope: hnRNP  A2/B1 (318-350)
Chemical type: Peptide from protein
Sequence: SGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR
Position: 318-350
Source molecule (GenBank): NP_112533.1
Assay category: MhcLigandElution
Result: Positive

Epitope: GAPDH (197-214)
Chemical type: Peptide from protein
Sequence: DGRGALQNIIPASTGAAK
Position: 198-215
Source molecule (GenBank): CAA25833.1
Assay category: MhcLigandElution
Result: Positive

Epitope: Cofilin-1 (8-20)
Chemical type: Peptide from protein
Sequence: DGVIKVFNDMKVR
Position: 9-21
Source molecule (GenBank): NP_005498.1
Assay category: MhcLigandElution
Result: Positive