LiteFold/IEDB huggingface dataset:
Reference: Jun Siong Low; Daniela Vaqueirinho; Federico Mele; Mathilde Foglierini; Josipa Jerak; Michela Perotti; David Jarrossay; Sandra Jovic; Laurent Perez; Rosalia Cacciatore; Tatiana Terrot; Alessandra Franzetti Pellanda; Maira Biggiogero; Christian Garzoni; Paolo Ferrari; Alessandro Ceschi; Antonio Lanzavecchia; Federica Sallusto; Antonino Cassotta. "Clonal analysis of immunodominance and cross-reactivity of the CD4 T cell response to SARS-CoV-2." Science (New York, N.Y.) (2021).

Epitope: SARS CoV2 S 350-359
Chemical type: Peptide from protein
Sequence: VYAWNRKRIS
Position: 350-359
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS CoV2 S 981-1000
Chemical type: Peptide from protein
Sequence: LSRLDKVEAEVQIDRLITGR
Position: 981-1000
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS CoV2 S 981-1000
Chemical type: Peptide from protein
Sequence: LSRLDKVEAEVQIDRLITGR
Position: 981-1000
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS CoV2 S 981-1000
Chemical type: Peptide from protein
Sequence: LSRLDKVEAEVQIDRLITGR
Position: 981-1000
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS CoV2 S 981-1000
Chemical type: Peptide from protein
Sequence: LSRLDKVEAEVQIDRLITGR
Position: 981-1000
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS CoV2 S 981-1000
Chemical type: Peptide from protein
Sequence: LSRLDKVEAEVQIDRLITGR
Position: 981-1000
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS CoV2 S 981-1000
Chemical type: Peptide from protein
Sequence: LSRLDKVEAEVQIDRLITGR
Position: 981-1000
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS CoV2 S 456-475
Chemical type: Peptide from protein
Sequence: FRKSNLKPFERDISTEIYQA
Position: 456-475
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: SARS CoV2 S 476-495
Chemical type: Peptide from protein
Sequence: GSTPCNGVEGFNCYFPLQSY
Position: 476-495
Source molecule (GenBank): P0DTC2.1
Assay category: TCell
Result: Positive
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Wenping Gong; Yan Liang; Jie Mi; Zaixing Jia; Yong Xue; Jie Wang; Lan Wang; Yusen Zhou; Shihui Sun; Xueqiong Wu. "Peptides-Based Vaccine MP3RT Induced Protective Immunity Against  Infection in a Humanized Mouse Model." Frontiers in immunology (2021).

Epitope: Mpt51 52-66
Chemical type: Peptide from protein
Sequence: VAFLAGGPHAVYLLD
Position: 52-66
Source molecule (GenBank): CCP46632.1
Assay category: TCell
Result: Positive-Low
Host: F 7-8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Mpt63 9-23
Chemical type: Peptide from protein
Sequence: TAVAVVAMAAIATFA
Position: 9-23
Source molecule (GenBank): CCP44693.1
Assay category: TCell
Result: Negative
Host: F 7-8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Mpt64 2-16
Chemical type: Peptide from protein
Sequence: RIKIFMLVTAVVLLC
Position: 2-16
Source molecule (GenBank): CCP44749.1
Assay category: TCell
Result: Negative
Host: F 7-8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Mpt64 71-85
Chemical type: Peptide from protein
Sequence: AQTRDKFLSAATSST
Position: 71-85
Source molecule (GenBank): CCP44749.1
Assay category: TCell
Result: Negative
Host: F 7-8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Mtb8.4 68-82
Chemical type: Peptide from protein
Sequence: YLRNFLAAPPPQRAA
Position: 68-82
Source molecule (GenBank): CCP43930.1
Assay category: TCell
Result: Negative
Host: F 7-8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: RpfB 157-171
Chemical type: Peptide from protein
Sequence: PNVAGLLSAAGVPLL
Position: 157-171
Source molecule (GenBank): CCP43759.1
Assay category: TCell
Result: Negative
Host: F 7-8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: RpfE 2-16
Chemical type: Peptide from protein
Sequence: KNARTTLIAAAIAGT
Position: 2-16
Source molecule (GenBank): CCP45243.1
Assay category: TCell
Result: Negative
Host: F 7-8 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Katja G Schmidt; Krystelle Nganou-Makamdop; Matthias Tenbusch; Boutaina El Kenz; Clara Maier; Dennis Lapuente; Klaus Überla; Bernd Spriewald; Silke Bergmann; Ellen G Harrer; Thomas Harrer. "SARS-CoV-2-Seronegative Subjects Target CTL Epitopes in the SARS-CoV-2 Nucleoprotein Cross-Reactive to Common Cold Coronaviruses." Frontiers in immunology (2021).

Epitope: OC43-LL9
Chemical type: Peptide from protein
Sequence: LPRWYFYYL
Position: 120-128
Source molecule (GenBank): QBQ01843.1
Assay category: TCell
Result: Positive
Cell type: T cell
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Caitlin I Stoddard; Jared Galloway; Helen Y Chu; Mackenzie M Shipley; Kevin Sung; Hannah L Itell; Caitlin R Wolf; Jennifer K Logue; Ariana Magedson; Meghan E Garrett; Katharine H D Crawford; Uri Laserson; Frederick A Matsen; Julie Overbaugh. "Epitope profiling reveals binding signatures of SARS-CoV-2 immune response in natural infection and cross-reactivity with endemic human CoVs." Cell reports (2021).

Epitope: CoV-2 S281-319
Chemical type: Peptide from protein
Sequence: ENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFR
Position: 281-319
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive

Epitope: CoV-2 S281-319
Chemical type: Peptide from protein
Sequence: ENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFR
Position: 281-319
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Negative

Epitope: CoV-2 S521-559
Chemical type: Peptide from protein
Sequence: PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKF
Position: 521-559
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Negative

Epitope: CoV-2 S521-559
Chemical type: Peptide from protein
Sequence: PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKF
Position: 521-559
Source molecule (GenBank): QHD43416.1
Assay category: BCell
Result: Positive

Epitope: CoV-2 ORF1ab1,801-1,839b
Chemical type: Peptide from protein
Sequence: ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHI
Position: 1801-1839
Source molecule (GenBank): QHD43415.1
Assay category: BCell
Result: Positive

Epitope: CoV-2 ORF1ab1,801-1,839b
Chemical type: Peptide from protein
Sequence: ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHI
Position: 1801-1839
Source molecule (GenBank): QHD43415.1
Assay category: BCell
Result: Positive

Epitope: CoV-2 ORF1ab5,961-5,999
Chemical type: Peptide from protein
Sequence: EGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFI
Position: 5961-5999
Source molecule (GenBank): QHD43415.1
Assay category: BCell
Result: Positive

Epitope: CoV-2 ORF1ab5,961-5,999
Chemical type: Peptide from protein
Sequence: EGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFI
Position: 5961-5999
Source molecule (GenBank): QHD43415.1
Assay category: BCell
Result: Negative
Reference: Gerald Willimsky; Christin Beier; Lena Immisch; George Papafotiou; Vivian Scheuplein; Andrean Goede; Hermann-Georg Holzhütter; Thomas Blankenstein; Peter M Kloetzel. "In vitro proteasome processing of neo-splicetopes does not predict their presentation in vivo." eLife (2021).

Epitope: RAC2 P29L linear
Chemical type: Peptide, no natural source
Sequence: FLGEYIPTV
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Engineered

Epitope: RAC2 P29L linear
Chemical type: Peptide, no natural source
Sequence: FLGEYIPTV
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Engineered
Reference: Luxuan Liu; Jian Feng; Yunming Li; Yugang Liu; Yanyan Wang; Zonghai Hu; Jie Xiong; Qianfei Zuo; Rui Zhang. "Identification and evaluation of protection effect of B-cell immunodominant epitopes of campylobacter jejuni PEB1." Microbial pathogenesis (2021).

Epitope: PEB1-1-18
Chemical type: Peptide from protein
Sequence: MVFRKSLLKLAVFALGAC
Position: 1-18
Source molecule (GenBank): YP_002344319
Assay category: BCell
Result: Negative
Host: M 8 weeks

Epitope: PEB1-7-24
Chemical type: Peptide from protein
Sequence: LLKLAVFALGACVAFSNA
Position: 7-24
Source molecule (GenBank): YP_002344319
Assay category: BCell
Result: Negative
Host: M 8 weeks

Epitope: PEB1-55-72
Chemical type: Peptide from protein
Sequence: DQATGEIKGFEVDVAKLL
Position: 55-72
Source molecule (GenBank): YP_002344319
Assay category: BCell
Result: Positive
Host: M 8 weeks

Epitope: PEB1-55-72
Chemical type: Peptide from protein
Sequence: DQATGEIKGFEVDVAKLL
Position: 55-72
Source molecule (GenBank): YP_002344319
Assay category: BCell
Result: Positive
Host: M 8 weeks

Epitope: PEB1-55-72
Chemical type: Peptide from protein
Sequence: DQATGEIKGFEVDVAKLL
Position: 55-72
Source molecule (GenBank): YP_002344319
Assay category: BCell
Result: Positive
Host: M 8 weeks

Epitope: PEB1-55-72
Chemical type: Peptide from protein
Sequence: DQATGEIKGFEVDVAKLL
Position: 55-72
Source molecule (GenBank): YP_002344319
Assay category: BCell
Result: Positive
Host: M 8 weeks
Reference: Ritu Gaur; Dipesh Kumar Verma; Syed Imteyaz Alam; Dev Vrat Kamboj. "Identification of MHC Class I bound peptides of Francisella tularensis Live Vaccine Strain using mass spectrometry." European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences (2021).

Epitope: P1
Chemical type: Peptide from protein
Sequence: PNVFRMKLMGA
Position: 143-153
Source molecule (GenBank): Q2A5V3.1
Assay category: MhcLigandElution
Result: Positive

Epitope: P1
Chemical type: Peptide from protein
Sequence: PNVFRMKLMGA
Position: 143-153
Source molecule (GenBank): Q2A5V3.1
Assay category: MhcLigandElution
Result: Positive

Epitope: P4
Chemical type: Peptide from protein
Sequence: FDEIDSAPEE
Position: 47-56
Source molecule (GenBank): Q2A1M0.1
Assay category: MhcLigandElution
Result: Positive
Reference: Daniel J Goetschius; Samantha R Hartmann; Lindsey J Organtini; Heather Callaway; Kai Huang; Carol M Bator; Robert E Ashley; Alexander M Makhov; James F Conway; Colin R Parrish; Susan L Hafenstein. "High-resolution asymmetric structure of a Fab-virus complex reveals overlap with the receptor binding site." Proceedings of the National Academy of Sciences of the United States of America (2021).

Epitope: Epitope of Fab 14 on canine parvovirus capsid protein 2
Chemical type: Discontinuous protein residues
Discontinuous residues: M87, D88, K89, A91, V92, N93, H222, T223, G224, T225, S226, G227, T228
Source molecule (GenBank): AJE59933.1
Assay category: BCell
Result: Positive

Epitope: Epitope of Fab 14 on canine parvovirus capsid protein 2
Chemical type: Discontinuous protein residues
Discontinuous residues: M87, D88, K89, A91, V92, N93, H222, T223, G224, T225, S226, G227, T228
Source molecule (GenBank): AJE59933.1
Assay category: BCell
Result: Positive

Epitope: Epitope of Fab 14 on canine parvovirus capsid protein 2
Chemical type: Discontinuous protein residues
Discontinuous residues: M87, D88, K89, A91, V92, N93, H222, T223, G224, T225, S226, G227, T228
Source molecule (GenBank): AJE59933.1
Assay category: BCell
Result: Positive
Reference: Romain Rouet; Ohan Mazigi; Gregory J Walker; David B Langley; Meghna Sobti; Peter Schofield; Helen Lenthall; Jennifer Jackson; Stephanie Ubiparipovic; Jake Y Henry; Arunasingam Abayasingam; Deborah Burnett; Anthony Kelleher; Robert Brink; Rowena A Bull; Stuart Turville; Alastair G Stewart; Christopher C Goodnow; William D Rawlinson; Daniel Christ. "Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1 antibodies." mAbs (2021).

Epitope: Epitope of CR3014-C8 Fab on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: L368, Y369, N370, S371, A372, F374, S375, T376, F377, K378, C379, Y380, G381, S383, P384, T385, R408, D427, D428, F429
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.83

Epitope: Epitope of CR3014-C8 Fab on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: L368, Y369, N370, S371, A372, F374, S375, T376, F377, K378, C379, Y380, G381, S383, P384, T385, R408, D427, D428, F429
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Quantitative measurement: 61.1

Epitope: Epitope of CR3014-C8 Fab on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: L368, Y369, N370, S371, A372, F374, S375, T376, F377, K378, C379, Y380, G381, S383, P384, T385, R408, D427, D428, F429
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Quantitative measurement: 58400.0

Epitope: Epitope of CR3014-C8 Fab on SARS-CoV-2 RBD
Chemical type: Discontinuous protein residues
Discontinuous residues: L368, Y369, N370, S371, A372, F374, S375, T376, F377, K378, C379, Y380, G381, S383, P384, T385, R408, D427, D428, F429
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.00357
Reference: Suzy A Eldershaw; Hayden Pearce; Charlotte F Inman; Karen P Piper; Ben Abbotts; Christine Stephens; Samantha Nicol; Wayne Croft; Richard Powell; Jusnara Begum; Graham Taylor; Jane Nunnick; Donna Walsh; Mirjana Sirovica; Shamyla Saddique; Sandeep Nagra; Paul Ferguson; Paul Moss; Ram Malladi. "DNA and modified vaccinia Ankara prime-boost vaccination generates strong CD8<sup>+</sup> T cell responses against minor histocompatibility antigen HA-1." British journal of haematology (2021).

Epitope: HA-1 peptide
Chemical type: Peptide from protein
Sequence: VLHDDLLEA
Position: 137-145
Source molecule (GenBank): AAH65223.1
Assay category: TCell
Result: Positive
Host: M 27-69 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: HA-1 peptide
Chemical type: Peptide from protein
Sequence: VLHDDLLEA
Position: 137-145
Source molecule (GenBank): AAH65223.1
Assay category: TCell
Result: Positive
Host: M 44-50 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: HA-1 peptide
Chemical type: Peptide from protein
Sequence: VLHDDLLEA
Position: 137-145
Source molecule (GenBank): AAH65223.1
Assay category: TCell
Result: Positive
Host: M 43-50 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: HA-1 peptide
Chemical type: Peptide from protein
Sequence: VLHDDLLEA
Position: 137-145
Source molecule (GenBank): AAH65223.1
Assay category: TCell
Result: Positive
Host: M 27-69 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: HA-1 peptide
Chemical type: Peptide from protein
Sequence: VLHDDLLEA
Position: 137-145
Source molecule (GenBank): AAH65223.1
Assay category: TCell
Result: Positive
Host: M 27-69 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Elin Aamdal; Else Marit Inderberg; Espen Basmo Ellingsen; Wenche Rasch; Paal Fredrik Brunsvig; Steinar Aamdal; Karen-Marie Heintz; Daniel Vodák; Sigve Nakken; Eivind Hovig; Marta Nyakas; Tormod Kyrre Guren; Gustav Gaudernack. "Combining a Universal Telomerase Based Cancer Vaccine With Ipilimumab in Patients With Metastatic Melanoma - Five-Year Follow Up of a Phase I/IIa Trial." Frontiers in immunology (2021).

Epitope: peptide p725 (TERT 691-705}
Chemical type: Peptide from protein
Sequence: RTFVLRVRAQDPPPE
Position: 691-705
Source molecule (GenBank): O14746.1
Assay category: BCell
Result: Negative
Host:  44-74 years

Epitope: peptide p725 (TERT 691-705}
Chemical type: Peptide from protein
Sequence: RTFVLRVRAQDPPPE
Position: 691-705
Source molecule (GenBank): O14746.1
Assay category: TCell
Result: Positive-Intermediate
Host:  44-74 years
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: peptide p725 (TERT 691-705}
Chemical type: Peptide from protein
Sequence: RTFVLRVRAQDPPPE
Position: 691-705
Source molecule (GenBank): O14746.1
Assay category: TCell
Result: Negative
Host:  44-74 years
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: peptide p725 (TERT 691-705}
Chemical type: Peptide from protein
Sequence: RTFVLRVRAQDPPPE
Position: 691-705
Source molecule (GenBank): O14746.1
Assay category: TCell
Result: Positive-Low
Host:  44-74 years
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: peptide p725 (TERT 691-705}
Chemical type: Peptide from protein
Sequence: RTFVLRVRAQDPPPE
Position: 691-705
Source molecule (GenBank): O14746.1
Assay category: TCell
Result: Positive
Host:  44-74 years
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Francesco Nicoli; Salvatore Pacifico; Eleonora Gallerani; Erika Marzola; Valentina Albanese; Valentina Finessi; Sian Llewellyn-Lacey; David A Price; Victor Appay; Peggy Marconi; Remo Guerrini; Antonella Caputo; Riccardo Gavioli. "Use of a Novel Peptide Welding Technology Platform for the Development of B- and T-Cell Epitope-Based Vaccines." Vaccines (2021).

Epitope: Tat 1-20
Chemical type: Peptide from protein
Sequence: MEPVDPRLEPWKHPGSQPKT
Position: 1-20
Source molecule (GenBank): P69697.1
Assay category: BCell
Result: Positive
Host: F 6 weeks

Epitope: Tat 1-20
Chemical type: Peptide from protein
Sequence: MEPVDPRLEPWKHPGSQPKT
Position: 1-20
Source molecule (GenBank): P69697.1
Assay category: BCell
Result: Positive
Host: F 6 weeks
Reference: Yanan Wang; Xiaofei Wang; Haitang Zhang; Hanna Fotina; Jinqing Jiang. "Preparation and Characterization of Monoclonal Antibodies with High Affinity and Broad Class Specificity against Zearalenone and Its Major Metabolites." Toxins (2021).

Epitope: alpha-Zearalenol
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Host: F 6 weeks
Reference: Yusuke Tomita; Akira Yuno; Hirotake Tsukamoto; Satoru Senju; Sachiko Yoshimura; Ryuji Osawa; Yasuhiro Kuroda; Masatoshi Hirayama; Atsushi Irie; Akinobu Hamada; Hirofumi Jono; Koji Yoshida; Takuya Tsunoda; Hirotsugu Kohrogi; Yoshihiro Yoshitake; Yusuke Nakamura; Masanori Shinohara; Yasuharu Nishimura. "Identification of CDCA1-derived long peptides bearing both CD4+ and CD8+ T-cell epitopes: CDCA1-specific CD4+ T-cell immunity in cancer patients." International journal of cancer (2014).

Epitope: CDCA1-A2 351-359 SP
Chemical type: Peptide from protein
Sequence: KLATAQFKI
Position: 351-359
Source molecule (GenBank): Q9BZD4.2
Assay category: TCell
Result: Positive-Low
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: CDCA1-A2 351-359 SP
Chemical type: Peptide from protein
Sequence: KLATAQFKI
Position: 351-359
Source molecule (GenBank): Q9BZD4.2
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: CDCA1-A2 351-359 SP
Chemical type: Peptide from protein
Sequence: KLATAQFKI
Position: 351-359
Source molecule (GenBank): Q9BZD4.2
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Yutaro Yamaoka; Kei Miyakawa; Sundararaj Stanleyraj Jeremiah; Rikako Funabashi; Koji Okudela; Sayaka Kikuchi; Junichi Katada; Atsuhiko Wada; Toshiki Takei; Mayuko Nishi; Kohei Shimizu; Hiroki Ozawa; Shuzo Usuku; Chiharu Kawakami; Nobuko Tanaka; Takeshi Morita; Hiroyuki Hayashi; Hideaki Mitsui; Keita Suzuki; Daisuke Aizawa; Yukihiro Yoshimura; Tomoyuki Miyazaki; Etsuko Yamazaki; Tadaki Suzuki; Hirokazu Kimura; Hideaki Shimizu; Nobuhiko Okabe; Hideki Hasegawa; Akihide Ryo. "Highly specific monoclonal antibodies and epitope identification against SARS-CoV-2 nucleocapsid protein for antigen detection tests." Cell reports. Medicine (2021).

Epitope: mAb 9
Chemical type: Peptide from protein
Sequence: GAIKLDDKDPNFKD
Position: 335-348
Source molecule (GenBank): YP_009724397.2
Assay category: BCell
Result: Positive
Quantitative measurement: 300000.0

Epitope: mAb 9
Chemical type: Peptide from protein
Sequence: GAIKLDDKDPNFKD
Position: 335-348
Source molecule (GenBank): YP_009724397.2
Assay category: BCell
Result: Positive
Quantitative measurement: 0.00011

Epitope: mAb 9
Chemical type: Peptide from protein
Sequence: GAIKLDDKDPNFKD
Position: 335-348
Source molecule (GenBank): YP_009724397.2
Assay category: BCell
Result: Positive

Epitope: mAb 9
Chemical type: Peptide from protein
Sequence: GAIKLDDKDPNFKD
Position: 335-348
Source molecule (GenBank): YP_009724397.2
Assay category: BCell
Result: Positive

Epitope: mAb 9
Chemical type: Peptide from protein
Sequence: GAIKLDDKDPNFKD
Position: 335-348
Source molecule (GenBank): YP_009724397.2
Assay category: BCell
Result: Positive

Epitope: mAb 9
Chemical type: Peptide from protein
Sequence: GAIKLDDKDPNFKD
Position: 335-348
Source molecule (GenBank): YP_009724397.2
Assay category: BCell
Result: Positive
Quantitative measurement: 0.37
Reference: Angela Lombardi; Erlinda Concepcion; Hanxi Hou; Hanane Arib; Mihaly Mezei; Roman Osman; Yaron Tomer. "Retro-inverso D-peptides as a novel targeted immunotherapy for Type 1 diabetes." Journal of autoimmunity (2020).

Epitope: RI-CT-P3C
Chemical type: Peptide, no natural source
Sequence: GGREGCVLYCAEVGG
Assay category: MhcBinding
Result: Negative

Epitope: RI-EXT3
Chemical type: Peptide, no natural source
Sequence: RSGGREGCVLYLAEVGGES
Assay category: MhcBinding
Result: Negative

Epitope: InsB:9-23
Chemical type: Peptide from protein
Sequence: HLVEALYLVCGERG
Position: 10-23
Source molecule (GenBank): 1XDA_B
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: InsB:9-23
Chemical type: Peptide from protein
Sequence: HLVEALYLVCGERG
Position: 10-23
Source molecule (GenBank): 1XDA_B
Assay category: TCell
Result: Positive
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: InsB:9-23
Chemical type: Peptide from protein
Sequence: HLVEALYLVCGERG
Position: 10-23
Source molecule (GenBank): 1XDA_B
Assay category: TCell
Result: Positive
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: InsB:9-23
Chemical type: Peptide from protein
Sequence: HLVEALYLVCGERG
Position: 10-23
Source molecule (GenBank): 1XDA_B
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: InsB:9-23
Chemical type: Peptide from protein
Sequence: HLVEALYLVCGERG
Position: 10-23
Source molecule (GenBank): 1XDA_B
Assay category: TCell
Result: Positive
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: InsB:9-23
Chemical type: Peptide from protein
Sequence: HLVEALYLVCGERG
Position: 10-23
Source molecule (GenBank): 1XDA_B
Assay category: TCell
Result: Positive
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: InsB:9-23
Chemical type: Peptide from protein
Sequence: HLVEALYLVCGERG
Position: 10-23
Source molecule (GenBank): 1XDA_B
Assay category: MhcBinding
Result: Positive