LiteFold/IEDB huggingface dataset:
Reference: Deanna Lamont; Gayatri Mukherjee; P Rajesh Kumar; Dibyendu Samanta; Caroline G McPhee; Thomas W H Kay; Steven C Almo; Teresa P DiLorenzo; David V Serreze. "Compensatory mechanisms allow undersized anchor-deficient class I MHC ligands to mediate pathogenic autoreactive T cell responses." Journal of immunology (Baltimore, Md. : 1950) (2014).

Epitope: YQLENYCGL
Chemical type: Peptide, no natural source
Sequence: YQLENYCGL
Assay category: TCell
Result: Positive
Cell type: splenocyte
Tissue: lymphoid
Culture conditions: Short Term Restimulated

Epitope: YQLENYCGL
Chemical type: Peptide, no natural source
Sequence: YQLENYCGL
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Short Term Restimulated

Epitope: YQLENYCGL
Chemical type: Peptide, no natural source
Sequence: YQLENYCGL
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: pancreas
Culture conditions: Direct Ex Vivo

Epitope: YQLENYCGL
Chemical type: Peptide, no natural source
Sequence: YQLENYCGL
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.34

Epitope: YQLENYCAL
Chemical type: Peptide, no natural source
Sequence: YQLENYCAL
Assay category: MhcBinding
Result: Positive

Epitope: InsA (14-19)
Chemical type: Peptide from protein
Sequence: YQLENY
Position: 103-108
Source molecule (GenBank): P01326.1
Assay category: MhcBinding
Result: Positive
Reference: Sarah Kutscher; Claudia J Dembek; Simone Deckert; Carolina Russo; Nina Körber; Johannes R Bogner; Fabian Geisler; Andreas Umgelter; Michael Neuenhahn; Julia Albrecht; Antonio Cosma; Ulrike Protzer; Tanja Bauer. "Overnight resting of PBMC changes functional signatures of antigen specific T- cell responses: impact for immune monitoring within clinical trials." PloS one (2013).

Epitope: CMV-IE1-derived HLA-A2 epitope
Chemical type: Peptide from protein
Sequence: VLEETSVML
Position: 316-324
Source molecule (GenBank): YP_002608299.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Marcus Odendahl; G Ulrich Grigoleit; Halvard Bönig; Michael Neuenhahn; Julia Albrecht; Florian Anderl; Lothar Germeroth; Marc Schmitz; Martin Bornhäuser; Hermann Einsele; Erhard Seifried; Dirk H Busch; Torsten Tonn. "Clinical-scale isolation of 'minimally manipulated' cytomegalovirus-specific donor lymphocytes for the treatment of refractory cytomegalovirus disease." Cytotherapy (2014).

Epitope: HLA-A*0101 CMV pp50(245-253)
Chemical type: Peptide from protein
Sequence: VTEHDTLLY
Position: 245-253
Source molecule (GenBank): AAO73452.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: HLA-A*0201 CMV IE-1(316-324)
Chemical type: Peptide from protein
Sequence: VLEETSVML
Position: 316-324
Source molecule (GenBank): YP_002608299.1
Assay category: TCell
Result: Positive
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Zhen-yong Keck; Allan G N Angus; Wenyan Wang; Patrick Lau; Yong Wang; Derek Gatherer; Arvind H Patel; Steven K H Foung. "Non-random escape pathways from a broadly neutralizing human monoclonal antibody map to a highly conserved region on the hepatitis C virus E2 glycoprotein encompassing amino acids 412-423." PLoS pathogens (2014).

Epitope: HMAb HC33.1
Chemical type: Discontinuous protein residues
Discontinuous residues: L413, I414, G418, W420
Source molecule (GenBank): AAB67036.1
Assay category: BCell
Result: Positive

Epitope: HMAb HC33.1
Chemical type: Discontinuous protein residues
Discontinuous residues: L413, I414, G418, W420
Source molecule (GenBank): AAB67036.1
Assay category: BCell
Result: Positive-Low
Reference: G Ahlén; F Holmström; A Gibbs; M Alheim; L Frelin. "Long-term functional duration of immune responses to HCV NS3/4A induced by DNA vaccination." Gene therapy (2014).

Epitope: #3
Chemical type: Peptide from protein
Sequence: LRAYMNTPGL
Position: 513-522
Source molecule (GenBank): ABN45875.1
Assay category: TCell
Result: Positive-High
Host: F 6-10 weeks
Cell type: T cell CD8+
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: #3
Chemical type: Peptide from protein
Sequence: LRAYMNTPGL
Position: 513-522
Source molecule (GenBank): ABN45875.1
Assay category: MhcBinding
Result: Negative

Epitope: #3
Chemical type: Peptide from protein
Sequence: LRAYMNTPGL
Position: 513-522
Source molecule (GenBank): ABN45875.1
Assay category: MhcBinding
Result: Positive

Epitope: #3
Chemical type: Peptide from protein
Sequence: LRAYMNTPGL
Position: 513-522
Source molecule (GenBank): ABN45875.1
Assay category: MhcBinding
Result: Negative
Reference: Jerome Nyhalah Dinga; Stanley Kimbung Mbandi; Fidelis Cho-Ngwa; Nde Peter Fon; Johnson Moliki; Rose Mary Efeti; Babila Raymond Nyasa; Damian Nota Anong; Nebojsa Jojic; David Heckerman; Ruobing Wang; Vincent P K Titanji. "Differential T-cell responses of semi-immune and susceptible malaria subjects to in silico predicted and synthetic peptides of Plasmodium falciparum." Acta tropica (2014).

Epitope: MSR-320
Chemical type: Peptide from protein
Sequence: HLNQGTLYL
Position: 136-144
Source molecule (GenBank): XP_001350064.1
Assay category: TCell
Result: Negative
Host:  18-50 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: MSR-320
Chemical type: Peptide from protein
Sequence: HLNQGTLYL
Position: 136-144
Source molecule (GenBank): XP_001350064.1
Assay category: TCell
Result: Negative
Host:  19-41 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: MSR-228
Chemical type: Peptide from protein
Sequence: KLGATIGAI
Position: 35-43
Source molecule (GenBank): ACR10123.1
Assay category: TCell
Result: Negative
Host:  18-50 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: MSR-228
Chemical type: Peptide from protein
Sequence: KLGATIGAI
Position: 35-43
Source molecule (GenBank): ACR10123.1
Assay category: TCell
Result: Negative
Host:  19-41 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: MSR-241
Chemical type: Peptide from protein
Sequence: MKYEGIFTY
Position: 110-118
Source molecule (GenBank): XP_001347337.1
Assay category: TCell
Result: Negative
Host:  18-50 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: MSR-241
Chemical type: Peptide from protein
Sequence: MKYEGIFTY
Position: 110-118
Source molecule (GenBank): XP_001347337.1
Assay category: TCell
Result: Negative
Host:  19-41 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Brigitte Milpied-Homsi; Ellen M Moran; Elizabeth J Phillips. "Antiviral drug allergy." Immunology and allergy clinics of North America (2014).

Epitope: Abacavir
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive

Epitope: Fosamprenavir
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive

Epitope: Lopinavir
Chemical type: Other Non-Sequence
Assay category: TCell
Result: Positive
Reference: John W McGinty; I-Ting Chow; Carla Greenbaum; Jared Odegard; William W Kwok; Eddie A James. "Recognition of posttranslationally modified GAD65 epitopes in subjects with type 1 diabetes." Diabetes (2014).

Epitope: GAD65 115–127 120E
Chemical type: Peptide from protein
Sequence: MNILLQYVVKSFD
Position: 115-127
Source molecule (GenBank): Q05329.1
Assay category: TCell
Result: Positive
Host:  10-63 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: GAD65 115–127 120E
Chemical type: Peptide from protein
Sequence: MNILLQYVVKSFD
Position: 115-127
Source molecule (GenBank): Q05329.1
Assay category: TCell
Result: Negative
Host:  19-54 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: GAD65 115–127 120E
Chemical type: Peptide from protein
Sequence: MNILLQYVVKSFD
Position: 115-127
Source molecule (GenBank): Q05329.1
Assay category: TCell
Result: Negative
Host:  20-61 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: GAD65 115–127 120E
Chemical type: Peptide from protein
Sequence: MNILLQYVVKSFD
Position: 115-127
Source molecule (GenBank): Q05329.1
Assay category: TCell
Result: Positive
Host:  10-63 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: GAD65 115–127 120E
Chemical type: Peptide from protein
Sequence: MNILLQYVVKSFD
Position: 115-127
Source molecule (GenBank): Q05329.1
Assay category: TCell
Result: Positive
Host:  10-63 years
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Cell Line / Clone

Epitope: GAD65 115–127 120E
Chemical type: Peptide from protein
Sequence: MNILLQYVVKSFD
Position: 115-127
Source molecule (GenBank): Q05329.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 200.0

Epitope: GAD65 265–284
Chemical type: Peptide from protein
Sequence: KGMAALPRLIAFTSEHSHFS
Position: 265-284
Source molecule (GenBank): Q05329.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 300.0

Epitope: GAD65 553–572
Chemical type: Peptide from protein
Sequence: KVNFFRMVISNPAATHQDID
Position: 553-572
Source molecule (GenBank): Q05329.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 10.0
Reference: Abu S Mustafa. "Characterization of a cross-reactive, immunodominant and HLA-promiscuous epitope of Mycobacterium tuberculosis-specific major antigenic protein PPE68." PloS one (2014).

Epitope: PPE68 P15
Chemical type: Peptide from protein
Sequence: TLGQLGEMSGPMQQLTQPLQQVTSL
Position: 208-232
Source molecule (GenBank): YP_001285263.1
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: PPE68 P24
Chemical type: Peptide from protein
Sequence: GLVAPAPLAQEREEDDEDDWDEEDDW
Position: 343-368
Source molecule (GenBank): YP_001285263.1
Assay category: TCell
Result: Positive-Low
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Sunghoon Kim; Hye Won Chung; Kyoung-Ryul Lee; Jong-Baeck Lim. "Identification of novel epitopes from human papillomavirus type 18 E7 that can sensitize PBMCs of multiple HLA class I against human cervical cancer." Journal of translational medicine (2014).

Epitope: E7 (33-47)
Chemical type: Peptide from protein
Sequence: DSEEENDEIDGVNHQ
Position: 33-47
Source molecule (GenBank): CAA00543.1
Assay category: TCell
Result: Negative
MHC allele types: 143 215 213 227
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Cell Line / Clone
Reference: Judith Rauen; Christoph Kreer; Arlette Paillard; Suzanne van Duikeren; Willemien E Benckhuijsen; Marcel G Camps; A Rob P M Valentijn; Ferry Ossendorp; Jan W Drijfhout; Ramon Arens; Sven Burgdorf. "Enhanced cross-presentation and improved CD8+ T cell responses after mannosylation of synthetic long peptides in mice." PloS one (2014).

Epitope: SLP 2
Chemical type: Peptide, no natural source
Sequence: ESLKISQAVHAAHAEINEAGRAAAAAK
Assay category: TCell
Result: Positive
Host:  8-10 weeks
Cell type: T cell CD4+
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Oleg Y Borbulevych; Sujatha M Santhanagopolan; Moushumi Hossain; Brian M Baker. "TCRs used in cancer gene therapy cross-react with MART-1/Melan-A tumor antigens via distinct mechanisms." Journal of immunology (Baltimore, Md. : 1950) (2011).

Epitope: AAGIGILTV nonamer
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: TCell
Result: Positive
Quantitative measurement: 2.6

Epitope: AAGIGILTV nonamer
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: TCell
Result: Positive
Quantitative measurement: 2.3

Epitope: AAGIGILTV nonamer
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: TCell
Result: Positive
Quantitative measurement: 40000.0

Epitope: AAGIGILTV nonamer
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: TCell
Result: Positive
Quantitative measurement: 170000.0

Epitope: AAGIGILTV nonamer
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.6

Epitope: AAGIGILTV nonamer
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: MhcBinding
Result: Positive
Quantitative measurement: 2.3
Reference: Priyamvada Acharya; William D Tolbert; Neelakshi Gohain; Xueji Wu; Lei Yu; Tongyun Liu; Wensheng Huang; Chih-Chin Huang; Young Do Kwon; Robert K Louder; Timothy S Luongo; Jason S McLellan; Marie Pancera; Yongping Yang; Baoshan Zhang; Robin Flinko; James S Foulke; Mohammad M Sajadi; Roberta Kamin-Lewis; James E Robinson; Loïc Martin; Peter D Kwong; Yongjun Guan; Anthony L DeVico; George K Lewis; Marzena Pazgier. "Structural definition of an antibody-dependent cellular cytotoxicity response implicated in reduced risk for HIV-1 infection." Journal of virology (2014).

Epitope: Epitope of Fab N5-i5 on HIV gp120 (93TH057)
Chemical type: Discontinuous protein residues
Discontinuous residues: T50, L51, F52, A57, A59, W68, T70, H71, A72, C73, V74, P75, T76, D77, P78, Q102, E105, D106, Q113
Source molecule (GenBank): Q0ED31.1
Assay category: BCell
Result: Positive
Quantitative measurement: 1.85

Epitope: Epitope of Fab N5-i5 on HIV gp120 (93TH057)
Chemical type: Discontinuous protein residues
Discontinuous residues: T50, L51, F52, A57, A59, W68, T70, H71, A72, C73, V74, P75, T76, D77, P78, Q102, E105, D106, Q113
Source molecule (GenBank): Q0ED31.1
Assay category: BCell
Result: Positive
Reference: Rebecca S Rudicell; Young Do Kwon; Sung-Youl Ko; Amarendra Pegu; Mark K Louder; Ivelin S Georgiev; Xueling Wu; Jiang Zhu; Jeffrey C Boyington; Xuejun Chen; Wei Shi; Zhi-Yong Yang; Nicole A Doria-Rose; Krisha McKee; Sijy O'Dell; Stephen D Schmidt; Gwo-Yu Chuang; Aliaksandr Druz; Cinque Soto; Yongping Yang; Baoshan Zhang; Tongqing Zhou; John-Paul Todd; Krissey E Lloyd; Joshua Eudailey; Kyle E Roberts; Bruce R Donald; Robert T Bailer; Julie Ledgerwood; James C Mullikin; Lawrence Shapiro; Richard A Koup; Barney S Graham; Martha C Nason; Mark Connors; Barton F Haynes; Srinivas S Rao; Mario Roederer; Peter D Kwong; John R Mascola; Gary J Nabel. "Enhanced potency of a broadly neutralizing HIV-1 antibody in vitro improves protection against lentiviral infection in vivo." Journal of virology (2014).

Epitope: Epitope of Fab VRC07 on HIV-1 gp120
Chemical type: Discontinuous protein residues
Discontinuous residues: K96, E101, N278, T280, N281, N282, A283, K284, S365, G366, G367, D368, I371, D451, G452, G453, A454, N455, T457, N459, E460, T461, R463, K470
Source molecule (GenBank): Q0ED31.1
Assay category: BCell
Result: Positive
Host: M 56 years

Epitope: Epitope of Fab VRC07 on HIV-1 gp120
Chemical type: Discontinuous protein residues
Discontinuous residues: K96, E101, N278, T280, N281, N282, A283, K284, S365, G366, G367, D368, I371, D451, G452, G453, A454, N455, T457, N459, E460, T461, R463, K470
Source molecule (GenBank): Q0ED31.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.2
Host: M 56 years

Epitope: Epitope of Fab VRC07 on HIV-1 gp120
Chemical type: Discontinuous protein residues
Discontinuous residues: K96, E101, N278, T280, N281, N282, A283, K284, S365, G366, G367, D368, I371, D451, G452, G453, A454, N455, T457, N459, E460, T461, R463, K470
Source molecule (GenBank): Q0ED31.1
Assay category: BCell
Result: Positive
Host: M 56 years

Epitope: Epitope of Fab VRC07-G54F on HIV-1 gp120
Chemical type: Discontinuous protein residues
Discontinuous residues: K96, E101, N278, T280, N281, N282, A283, K284, S365, G366, G367, D368, E370, I371, N419, M420, W421, Q422, G423, D451, G452, G453, A454, N455, E460, T461, R463, G467, K470
Source molecule (GenBank): Q0ED31.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.5
Host: M 56 years

Epitope: Epitope of Fab VRC07-G54F on HIV-1 gp120
Chemical type: Discontinuous protein residues
Discontinuous residues: K96, E101, N278, T280, N281, N282, A283, K284, S365, G366, G367, D368, E370, I371, N419, M420, W421, Q422, G423, D451, G452, G453, A454, N455, E460, T461, R463, G467, K470
Source molecule (GenBank): Q0ED31.1
Assay category: BCell
Result: Positive
Host: M 56 years

Epitope: Epitope of Fab VRC07-I30Q,G54W,S58N on HIV-1 gp120
Chemical type: Discontinuous protein residues
Discontinuous residues: K96, E101, N278, T280, N281, N282, A283, K284, K357, S365, G366, G367, D368, E370, I371, N419, M420, W421, G423, R450, D451, G452, G453, A454, N455, N456, T457, N459, E460, T461, R463, G467
Source molecule (GenBank): Q0ED31.1
Assay category: BCell
Result: Positive
Quantitative measurement: 2.13
Host: M 56 years
Reference: Zhaohua Lu; Michael J Rynkiewicz; Chiou-Ying Yang; Guillermo Madico; Hillary M Perkins; Marly I Roche; Barbara A Seaton; Jacqueline Sharon. "Functional and structural characterization of Francisella tularensis O-antigen antibodies at the low end of antigen reactivity." Monoclonal antibodies in immunodiagnosis and immunotherapy (2014).

Epitope: (OAg)2
Chemical type: Carbohydrate fragment
Assay category: BCell
Result: Positive

Epitope: (OAg)2
Chemical type: Carbohydrate fragment
Assay category: BCell
Result: Positive-High

Epitope: (OAg)2
Chemical type: Carbohydrate fragment
Assay category: BCell
Result: Positive

Epitope: (OAg)2
Chemical type: Carbohydrate fragment
Assay category: BCell
Result: Positive

Epitope: (OAg)2
Chemical type: Carbohydrate fragment
Assay category: BCell
Result: Positive-High

Epitope: (OAg)2
Chemical type: Carbohydrate fragment
Assay category: BCell
Result: Positive-High
Reference: Alexander D Douglas; Andrew R Williams; Ellen Knuepfer; Joseph J Illingworth; Julie M Furze; Cécile Crosnier; Prateek Choudhary; Leyla Y Bustamante; Sara E Zakutansky; Dennis K Awuah; Daniel G W Alanine; Michel Theron; Andrew Worth; Richard Shimkets; Julian C Rayner; Anthony A Holder; Gavin J Wright; Simon J Draper. "Neutralization of Plasmodium falciparum merozoites by antibodies against PfRH5." Journal of immunology (Baltimore, Md. : 1950) (2014).

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive
Quantitative measurement: 460000.0

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive
Quantitative measurement: 0.00058

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive
Quantitative measurement: 1.2

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive-High

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive

Epitope: QA5 epitope
Chemical type: Peptide from protein
Sequence: YGKCIAVDAFIKKI
Position: 200-213
Source molecule (GenBank): XP_001351544.1
Assay category: BCell
Result: Positive
Reference: Ingrid Lindh; Omri Snir; Erik Lönnblom; Hüseyin Uysal; Ida Andersson; Kutty Selva Nandakumar; Michel Vierboom; Bert 't Hart; Vivianne Malmström; Rikard Holmdahl. "Type II collagen antibody response is enriched in the synovial fluid of rheumatoid joints and directed to the same major epitopes as in collagen induced arthritis in primates and mice." Arthritis research & therapy (2014).

Epitope: CII P28
Chemical type: Peptide from protein
Sequence: GDPGRPGEPGLPGARGLTGRPGDA
Position: 546-569
Source molecule (GenBank): P02458.3
Assay category: BCell
Result: Positive
Host: M 8-12 weeks

Epitope: CII P47
Chemical type: Peptide from protein
Sequence: GPAGFAGPPGADGQPGAKGEQGEA
Position: 831-854
Source molecule (GenBank): P02458.3
Assay category: BCell
Result: Negative
Host: M 8-12 weeks

Epitope: CII P66
Chemical type: Peptide from protein
Sequence: GDKGEAGEPGERGLKGHRGFTGLQ
Position: 1116-1139
Source molecule (GenBank): P02458.3
Assay category: BCell
Result: Negative
Host: M 8-12 weeks
Reference: Bo Tang; Seunghyun Kim; Sarah Hammond; David L Cullins; David D Brand; Edward F Rosloniec; John M Stuart; Arnold E Postlethwaite; Andrew H Kang; Linda K Myers. "Characterization of T cell phenotype and function in a double transgenic (collagen-specific TCR/HLA-DR1) humanized model of arthritis." Arthritis research & therapy (2014).

Epitope: collagen mA2 peptide
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKGEP
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: collagen mA2 peptide
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKGEP
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: collagen mA2 peptide
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKGEP
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: collagen mA2 peptide
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKGEP
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: collagen mA2 peptide
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKGEP
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: collagen mA2 peptide
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKGEP
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: collagen mA2 peptide
Chemical type: Peptide from protein
Sequence: GIAGFKGDQGPKGEP
Assay category: TCell
Result: Positive
Host:  8-12 weeks
Cell type: lymph node cells
Tissue: lymph node
Culture conditions: Direct Ex Vivo