LiteFold/IEDB huggingface dataset:
Reference: Jacopo Chiaro; Henna H E Kasanen; Thomas Whalley; Cristian Capasso; Mikaela Grönholm; Sara Feola; Karita Peltonen; Firas Hamdan; Micaela Hernberg; Siru Mäkelä; Hanna Karhapää; Paul E Brown; Beatriz Martins; Manlio Fusciello; Erkko O Ylösmäki; Dario Greco; Anna S Kreutzman; Satu Mustjoki; Barbara Szomolay; Vincenzo Cerullo. "Viral Molecular Mimicry Influences the Antitumor Immune Response in Murine and Human Melanoma." Cancer immunology research (2021).

Epitope: Tyr 208-216
Chemical type: Peptide from protein
Sequence: LPWHRLFLL
Position: 208-216
Source molecule (GenBank): NP_001304326.1
Assay category: TCell
Result: Positive-Low
Host: F 8-9 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: TRP2 homologous viral peptide
Chemical type: Peptide from protein
Sequence: KVYTFFKFL
Position: 352-360
Source molecule (GenBank): P12926.1
Assay category: TCell
Result: Positive-High
Host: F 8-9 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Qian Wang; Dingjin Ju; Jinyan Gao; Ping Tong; Hongbing Chen. "Epitope Mapping of Lysozyme Using the Chinese Egg-Allergic Sera at Both Pooled and Individual Levels." Journal of agricultural and food chemistry (2023).

Epitope: Lysozyme C 28-42_ peptide 4
Chemical type: Peptide from protein
Sequence: AAMKRHGLDNYRGYS
Position: 28-42
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Negative
Host:  0-59 years

Epitope: Lysozyme C 28-42_ peptide 4
Chemical type: Peptide from protein
Sequence: AAMKRHGLDNYRGYS
Position: 28-42
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Positive
Host:  0-59 years

Epitope: Lysozyme C 43-57_ peptide 9
Chemical type: Peptide from protein
Sequence: LGNWVCAAKFESNFN
Position: 43-57
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Positive
Host:  0-59 years

Epitope: Lysozyme C 43-57_ peptide 9
Chemical type: Peptide from protein
Sequence: LGNWVCAAKFESNFN
Position: 43-57
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Positive
Host:  0-59 years

Epitope: Lysozyme C 52-66_ peptide 12
Chemical type: Peptide from protein
Sequence: FESNFNTQATNRNTD
Position: 52-66
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Negative
Host:  0-59 years

Epitope: Lysozyme C 52-66_ peptide 12
Chemical type: Peptide from protein
Sequence: FESNFNTQATNRNTD
Position: 52-66
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Negative
Host:  0-59 years

Epitope: Lysozyme C 67-81_ peptide 17
Chemical type: Peptide from protein
Sequence: GSTDYGILQINSRWW
Position: 67-81
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Negative
Host:  0-59 years

Epitope: Lysozyme C 67-81_ peptide 17
Chemical type: Peptide from protein
Sequence: GSTDYGILQINSRWW
Position: 67-81
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Negative
Host:  0-59 years

Epitope: Lysozyme C 115-129_ peptide 33
Chemical type: Peptide from protein
Sequence: KIVSDGNGMNAWVAW
Position: 115-129
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Negative
Host:  0-59 years

Epitope: Lysozyme C 115-129_ peptide 33
Chemical type: Peptide from protein
Sequence: KIVSDGNGMNAWVAW
Position: 115-129
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Negative
Host:  0-59 years

Epitope: Lysozyme AA3-13
Chemical type: Peptide from protein
Sequence: FGRCELAAAMK
Position: 21-31
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Positive
Host:  0-59 years

Epitope: Lysozyme AA3-13
Chemical type: Peptide from protein
Sequence: FGRCELAAAMK
Position: 21-31
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Positive
Host:  0-59 years

Epitope: Lysozyme AA88-93
Chemical type: Peptide from protein
Sequence: ITASVN
Position: 106-111
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Positive
Host:  0-59 years

Epitope: Lysozyme AA30-37
Chemical type: Peptide from protein
Sequence: CAAKFESN
Position: 48-55
Source molecule (GenBank): P00698.1
Assay category: BCell
Result: Positive
Host:  0-59 years
Reference: Lasse Toftdal Dynesen; Ignacio Fernandez; Youna Coquin; Manon Delaplace; Thomas Montange; Richard Njouom; Chanceline Bilounga-Ndongo; Félix A Rey; Antoine Gessain; Marija Backovic; Florence Buseyne. "Neutralization of zoonotic retroviruses by human antibodies: Genotype-specific epitopes within the receptor-binding domain from simian foamy virus." PLoS pathogens (2023).

Epitope: BAK74-350
Chemical type: Peptide from protein
Sequence: GNKLKNRALPYEWAKGGLNRLFRNI
Position: 350-374
Source molecule (GenBank): AFX98090.1
Assay category: BCell
Result: Negative

Epitope: BAK74-441
Chemical type: Peptide from protein
Sequence: REGKEEVKCLTSDHTRCLYYP
Position: 438-458
Source molecule (GenBank): AFX98090.1
Assay category: BCell
Result: Negative

Epitope: PFV-66
Chemical type: Peptide from protein
Sequence: SFSLWEGDCNFTKDM
Position: 396-410
Source molecule (GenBank): AQM52259.1
Assay category: BCell
Result: Negative

Epitope: GII SUvar RBD apex L4
Chemical type: Peptide from protein
Sequence: EEVKCLTSDHTRCLYYP
Position: 442-458
Source molecule (GenBank): AFX98090.1
Assay category: BCell
Result: Positive
Reference: Woo-Sung Ahn; Tae-Sung Kim; Yong Jun Park; Young Kwang Park; Hag Dong Kim; Joon Kim. "Production, characterization, and epitope mapping of monoclonal antibodies of ribosomal protein S3 (rpS3)." Animal cells and systems (2021).

Epitope: E22
Chemical type: Peptide from protein
Sequence: DHVSIVEPKDEILPT
Position: 206-220
Source molecule (GenBank): NP_001243731.1
Assay category: BCell
Result: Positive

Epitope: E26
Chemical type: Peptide from protein
Sequence: IVEPKDEILPTTPIS
Position: 210-224
Source molecule (GenBank): NP_001243731.1
Assay category: BCell
Result: Positive

Epitope: E37
Chemical type: Peptide from protein
Sequence: TPISEQKGGKPEPPA
Position: 221-235
Source molecule (GenBank): NP_001243731.1
Assay category: BCell
Result: Negative
Reference: Mary L Disis; Yushe Dang; Andrew L Coveler; Jennifer S Childs; Doreen M Higgins; Ying Liu; Jing Zhou; Sean Mackay; Lupe G Salazar. "A Phase I/II Trial of HER2 Vaccine-Primed Autologous T-Cell Infusions in Patients with Treatment Refractory HER2-Overexpressing Breast Cancer." Clinical cancer research : an official journal of the American Association for Cancer Research (2023).

Epitope: p328
Chemical type: Peptide from protein
Sequence: TQRCEKCSKPCARVCYGL
Position: 328-345
Source molecule (GenBank): AAA75493.1
Assay category: TCell
Result: Positive
Host: F 32-66 years
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: p328
Chemical type: Peptide from protein
Sequence: TQRCEKCSKPCARVCYGL
Position: 328-345
Source molecule (GenBank): AAA75493.1
Assay category: TCell
Result: Positive
Host: F 32-66 years
Cell type: PBMC
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Olivia G Thomas; Mattias Bronge; Katarina Tengvall; Birce Akpinar; Ola B Nilsson; Erik Holmgren; Tara Hessa; Guro Gafvelin; Mohsen Khademi; Lars Alfredsson; Roland Martin; André Ortlieb Guerreiro-Cacais; Hans Grönlund; Tomas Olsson; Ingrid Kockum. "Cross-reactive EBNA1 immunity targets alpha-crystallin B and is associated with multiple sclerosis." Science advances (2023).

Epitope: CRYAB 1-15
Chemical type: Peptide from protein
Sequence: MDIAIHHPWIRRPFF
Position: 1-15
Source molecule (GenBank): P02511.2
Assay category: BCell
Result: Positive
Host:  17-67 years

Epitope: CRYAB 1-15
Chemical type: Peptide from protein
Sequence: MDIAIHHPWIRRPFF
Position: 1-15
Source molecule (GenBank): P02511.2
Assay category: BCell
Result: Positive
Host:  17-68 years

Epitope: CRYAB 6-20
Chemical type: Peptide from protein
Sequence: HHPWIRRPFFPFHSP
Position: 6-20
Source molecule (GenBank): P02511.2
Assay category: BCell
Result: Positive
Host:  17-68 years

Epitope: CRYAB 6-20
Chemical type: Peptide from protein
Sequence: HHPWIRRPFFPFHSP
Position: 6-20
Source molecule (GenBank): P02511.2
Assay category: BCell
Result: Positive
Host:  17-67 years
Reference: Sumedha Sharma; Deepti Suri; Ashutosh N Aggarwal; Rakesh Yadav; Sunil Sethi; Suman Laal; Indu Verma. "Evaluation of immunodominant peptides of in vivo expressed mycobacterial antigens in an ELISA-based diagnostic assay for pulmonary tuberculosis." Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] (2023).

Epitope: P11
Chemical type: Peptide from protein
Sequence: MRINEEIDAL
Position: 127-136
Source molecule (GenBank): O53966.1
Assay category: BCell
Result: Positive
Reference: Olga D Hendrickson; Liliya I Mukhametova; Elena A Zvereva; Anatoly V Zherdev; Sergei A Eremin. "A Sensitive Fluorescence Polarization Immunoassay for the Rapid Detection of Okadaic Acid in Environmental Waters." Biosensors (2023).

Epitope: Okadaic Acid
Chemical type: Other Non-Sequence
Assay category: BCell
Result: Positive
Quantitative measurement: 0.8
Reference: Pongsakorn Thawornpan; Chayapat Malee; Piyawan Kochayoo; Kittikorn Wangriatisak; Chaniya Leepiyasakulchai; Francis B Ntumngia; Sai Lata De; John H Adams; Patchanee Chootong. "Characterization of Duffy Binding Protein II-specific CD4<sup>+</sup>T cell responses in Plasmodium vivax patients." Scientific reports (2023).

Epitope: Peptide 1
Chemical type: Peptide from protein
Sequence: DITFRKLYLKRKLIY
Position: 264-278
Source molecule (GenBank): AAZ81525.1
Assay category: TCell
Result: Positive-Low
Host:  24-46 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Peptide 3
Chemical type: Peptide from protein
Sequence: TFRKLYLKRKLIYDA
Position: 266-280
Source molecule (GenBank): AAZ81525.1
Assay category: TCell
Result: Positive-Low
Host:  24-46 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: Peptide 16
Chemical type: Peptide from protein
Sequence: KDIRWSLGDFGDIIM
Position: 301-315
Source molecule (GenBank): AAZ81525.1
Assay category: TCell
Result: Negative
Host:  24-46 years
Cell type: PBMC
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Kellie N Smith; Nicolas J Llosa; Tricia R Cottrell; Nicholas Siegel; Hongni Fan; Prerna Suri; Hok Yee Chan; Haidan Guo; Teniola Oke; Anas H Awan; Franco Verde; Ludmila Danilova; Valsamo Anagnostou; Ada J Tam; Brandon S Luber; Bjarne R Bartlett; Laveet K Aulakh; John-William Sidhom; Qingfeng Zhu; Cynthia L Sears; Leslie Cope; William H Sharfman; Elizabeth D Thompson; Joanne Riemer; Kristen A Marrone; Jarushka Naidoo; Victor E Velculescu; Patrick M Forde; Bert Vogelstein; Kenneth W Kinzler; Nickolas Papadopoulos; Jennifer N Durham; Hao Wang; Dung T Le; Sune Justesen; Janis M Taube; Luis A Diaz; Julie R Brahmer; Drew M Pardoll; Robert A Anders; Franck Housseau. "Persistent mutant oncogene specific T cells in two patients benefitting from anti-PD-1." Journal for immunotherapy of cancer (2019).

Epitope: LUAD 2
Chemical type: Peptide, no natural source
Sequence: WSDPLKLTV
Assay category: TCell
Result: Positive
Host: F 76 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: LUAD 10
Chemical type: Peptide, no natural source
Sequence: TVDLQSHWAA
Assay category: TCell
Result: Positive
Host: F 76 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: CRC 12
Chemical type: Peptide, no natural source
Sequence: RTMTQFHF
Assay category: TCell
Result: Negative
Host: F 69 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: CRC 15
Chemical type: Peptide, no natural source
Sequence: EVHRFVVCEY
Assay category: TCell
Result: Negative
Host: F 69 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: CRC 26
Chemical type: Peptide, no natural source
Sequence: AELTGIKWCRY
Assay category: TCell
Result: Negative
Host: F 69 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo
Reference: Max O Meneveau; Gina R Petroni; Elise P Salerno; Kevin T Lynch; Mark Smolkin; Elizabeth Woodson; Kimberly A Chianese-Bullock; Walter C Olson; Donna Deacon; James W Patterson; William W Grosh; Craig L Slingluff. "Immunogenicity in humans of a transdermal multipeptide melanoma vaccine administered with or without a TLR7 agonist." Journal for immunotherapy of cancer (2021).

Epitope: gp100 17-25
Chemical type: Peptide from protein
Sequence: ALLAVGATK
Position: 17-25
Source molecule (GenBank): F8W1D1.1
Assay category: TCell
Result: Negative
Host:  14-75 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: gp100 17-25
Chemical type: Peptide from protein
Sequence: ALLAVGATK
Position: 17-25
Source molecule (GenBank): F8W1D1.1
Assay category: TCell
Result: Negative
Host:  14-75 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Direct Ex Vivo

Epitope: gp100 17-25
Chemical type: Peptide from protein
Sequence: ALLAVGATK
Position: 17-25
Source molecule (GenBank): F8W1D1.1
Assay category: TCell
Result: Positive
Host:  14-75 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: gp100 17-25
Chemical type: Peptide from protein
Sequence: ALLAVGATK
Position: 17-25
Source molecule (GenBank): F8W1D1.1
Assay category: TCell
Result: Negative
Host:  14-75 years
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Usman Y Panni; Michael Y Chen; Felicia Zhang; Darren R Cullinan; Lijin Li; C Alston James; Xiuli Zhang; S Rogers; A Alarcon; John M Baer; Daoxiang Zhang; Feng Gao; Christopher A Miller; Qingqing Gong; Kian-Huat Lim; David G DeNardo; S Peter Goedegebuure; William E Gillanders; William G Hawkins. "Induction of cancer neoantigens facilitates development of clinically relevant models for the study of pancreatic cancer immunobiology." Cancer immunology, immunotherapy : CII (2023).

Epitope: Ubox5
Chemical type: Peptide, no natural source
Sequence: PQDVDLHAPALPMES
Assay category: TCell
Result: Negative
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Nae1
Chemical type: Peptide, no natural source
Sequence: KAIKNVNTA
Assay category: TCell
Result: Negative
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Edrf1
Chemical type: Peptide, no natural source
Sequence: QMALFLDKL
Assay category: TCell
Result: Negative
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Tm6sf1
Chemical type: Peptide, no natural source
Sequence: SGLGWLRNL
Assay category: TCell
Result: Negative
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: Zfp691
Chemical type: Peptide, no natural source
Sequence: SNFGAHQRM
Assay category: TCell
Result: Negative
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Yang Pan; John W Phillips; Beatrice D Zhang; Miyako Noguchi; Eric Kutschera; Jami McLaughlin; Pavlo A Nesterenko; Zhiyuan Mao; Nathanael J Bangayan; Robert Wang; Wendy Tran; Harry T Yang; Yuanyuan Wang; Yang Xu; Matthew B Obusan; Donghui Cheng; Alex H Lee; Kathryn E Kadash-Edmondson; Ameya Champhekar; Cristina Puig-Saus; Antoni Ribas; Robert M Prins; Christopher S Seet; Gay M Crooks; Owen N Witte; Yi Xing. "IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing." Proceedings of the National Academy of Sciences of the United States of America (2023).

Epitope: WSLPGLSYNV
Chemical type: Peptide from protein
Sequence: WSLPGLSYNV
Position: 339-348
Source molecule (GenBank): A0A0U1RQD2.2
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: SLDGTTTKA
Chemical type: Peptide from protein
Sequence: SLDGTTTKA
Position: 636-644
Source molecule (GenBank): F8WA11.2
Assay category: TCell
Result: Positive
Cell type: Jurkat cell (T cell)
Tissue: blood
Culture conditions: Engineered

Epitope: SLDGTTTKA
Chemical type: Peptide from protein
Sequence: SLDGTTTKA
Position: 636-644
Source molecule (GenBank): F8WA11.2
Assay category: TCell
Result: Positive
Cell type: Jurkat cell (T cell)
Tissue: blood
Culture conditions: Engineered

Epitope: SLDGTTTKA
Chemical type: Peptide from protein
Sequence: SLDGTTTKA
Position: 636-644
Source molecule (GenBank): F8WA11.2
Assay category: TCell
Result: Positive
Cell type: Jurkat cell (T cell)
Tissue: blood
Culture conditions: Engineered

Epitope: YLPLLTFGA
Chemical type: Peptide, no natural source
Sequence: YLPLLTFGA
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: TMPPQMGSV
Chemical type: Peptide from protein
Sequence: TMPPQMGSV
Position: 592-600
Source molecule (GenBank): Q13492-2.1
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated

Epitope: FQIPVSEVYTV
Chemical type: Peptide from protein
Sequence: FQIPVSEVYTV
Position: 259-269
Source molecule (GenBank): XP_054218343.1
Assay category: TCell
Result: Negative
Cell type: T cell
Tissue: blood
Culture conditions: Short Term Restimulated
Reference: Zihan Ma; Chenfeng Mao; Xiao Chen; Shiyu Yang; Zhihua Qiu; Baoqi Yu; Yiting Jia; Chao Wu; Yiyi Wang; Yuhui Wang; Rui Gu; Fang Yu; Yanhui Yin; Xian Wang; Qingbo Xu; Chuanju Liu; Yuhua Liao; Jingang Zheng; Yi Fu; Wei Kong. "Peptide Vaccine Against ADAMTS-7 Ameliorates Atherosclerosis and Postinjury Neointima Hyperplasia." Circulation (2023).

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host: M 6 weeks

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host: M 6 weeks

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host: M 6 weeks

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host:  6-8 months

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host:  6-8 months

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host:  6-8 months

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host:  6-8 months

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host: M 6 weeks

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host: M 6 weeks

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: BCell
Result: Positive
Host:  6-8 months

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: TCell
Result: Negative
Host: M 6 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo

Epitope: ADAMTS-7 E1
Chemical type: Peptide from protein
Sequence: DCEPVGKRP
Position: 404-412
Source molecule (GenBank): Q9UKP4.2
Assay category: TCell
Result: Negative
Host: M 6 weeks
Cell type: splenocyte
Tissue: spleen
Culture conditions: Direct Ex Vivo
Reference: Giacomo Oliveira; Kari Stromhaug; Nicoletta Cieri; J Bryan Iorgulescu; Susan Klaeger; Jacquelyn O Wolff; Suzanna Rachimi; Vipheaviny Chea; Kate Krause; Samuel S Freeman; Wandi Zhang; Shuqiang Li; David A Braun; Donna Neuberg; Steven A Carr; Kenneth J Livak; Dennie T Frederick; Edward F Fritsch; Megan Wind-Rotolo; Nir Hacohen; Moshe Sade-Feldman; Charles H Yoon; Derin B Keskin; Patrick A Ott; Scott J Rodig; Genevieve M Boland; Catherine J Wu. "Landscape of helper and regulatory antitumour CD4<sup>+</sup> T cells in melanoma." Nature (2022).

Epitope: LAMC1 1505-1519
Chemical type: Peptide from protein
Sequence: KAKNSVTSLLSIIND
Position: 1505-1519
Source molecule (GenBank): P11047.3
Assay category: TCell
Result: Positive-Low
Host: M 61
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Engineered

Epitope: PLEC p.P3283S
Chemical type: Peptide, no natural source
Sequence: GGIVDSSKSHRVPLD
Assay category: TCell
Result: Positive
Host: F 63
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Engineered

Epitope: PLXNB2 p.S1746F
Chemical type: Peptide, no natural source
Sequence: KEIFTYKKMVEDYYK
Assay category: TCell
Result: Positive
Host: F 63
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Engineered

Epitope: MLANA
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: TCell
Result: Positive
Host: M 26
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Engineered

Epitope: MLANA
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: TCell
Result: Positive
Host: M 26
Cell type: T cell CD8+
Tissue: blood
Culture conditions: Engineered

Epitope: MLANA
Chemical type: Peptide from protein
Sequence: AAGIGILTV
Position: 27-35
Source molecule (GenBank): Q16655.1
Assay category: TCell
Result: Positive
Host: M 26
Cell type: T cell CD4+
Tissue: blood
Culture conditions: Engineered
Reference: Jean Van Rampelbergh; Peter Achenbach; Richard David Leslie; Mohammad Alhadj Ali; Colin Dayan; Bart Keymeulen; Katharine R Owen; Martin Kindermans; Frédéric Parmentier; Vincent Carlier; Roxana R Ahangarani; Evelien Gebruers; Nicolas Bovy; Luc Vanderelst; Marcelle Van Mechelen; Pierre Vandepapelière; Christian Boitard. "First-in-human, double-blind, randomized phase 1b study of peptide immunotherapy IMCY-0098 in new-onset type 1 diabetes." BMC medicine (2023).

Epitope: C20-A1
Chemical type: Peptide from protein
Sequence: SLQPLALEGSLQKRG
Position: 76-90
Source molecule (GenBank): NP_000198.1
Assay category: MhcBinding
Result: Positive

Epitope: C20-A1
Chemical type: Peptide from protein
Sequence: SLQPLALEGSLQKRG
Position: 76-90
Source molecule (GenBank): NP_000198.1
Assay category: MhcBinding
Result: Positive
Reference: Xin Li; Hong-Xia Wang; Xiaofeng Yin; Xueheng Li; Haixia Li; Xiaohe Zhang; Zheng Wang; Yu-Rong Qiu. "Screening epitope peptides based on a phage-displayed random peptide and peptide microarrays to contribute to improving the diagnostic efficiency of systemic lupus erythematosus." Immunology letters (2023).

Epitope: SLE_P20-seq12422
Chemical type: Peptide, no natural source
Sequence: DSTCPMVTAPCS
Assay category: BCell
Result: Positive-Low

Epitope: SLE_P20-seq12422
Chemical type: Peptide, no natural source
Sequence: DSTCPMVTAPCS
Assay category: BCell
Result: Positive

Epitope: SLE_P27-seq38567
Chemical type: Peptide, no natural source
Sequence: GLYHSNASFRVP
Assay category: BCell
Result: Positive-Low

Epitope: SLE_P27-seq38567
Chemical type: Peptide, no natural source
Sequence: GLYHSNASFRVP
Assay category: BCell
Result: Positive
Reference: Samuel B Lundin; Hanna Kann; Alma Fulurija; Björn Andersson; Sravya S Nakka; Lars-Magnus Andersson; Magnus Gisslén; Ali M Harandi. "A novel precision-serology assay for SARS-CoV-2 infection based on linear B-cell epitopes of Spike protein." Frontiers in immunology (2023).

Epitope: S_006
Chemical type: Peptide from protein
Sequence: NVYADSF
Position: 394-400
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive

Epitope: S_021 1252
Chemical type: Peptide from protein
Sequence: CCKFDEDDSEPV
Position: 1253-1264
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive-Low

Epitope: S_021 1252
Chemical type: Peptide from protein
Sequence: CCKFDEDDSEPV
Position: 1253-1264
Source molecule (GenBank): P0DTC2.1
Assay category: BCell
Result: Positive