Reference: Florian Huber; Marion Arnaud; Brian J Stevenson; Justine Michaux; Fabrizio Benedetti; Jonathan Thevenet; Sara Bobisse; Johanna Chiffelle; Talita Gehert; Markus Müller; HuiSong Pak; Anne I Krämer; Emma Ricart Altimiras; Julien Racle; Marie Taillandier-Coindard; Katja Muehlethaler; Aymeric Auger; Damien Saugy; Baptiste Murgues; Abdelkader Benyagoub; David Gfeller; Denarda Dangaj Laniti; Lana Kandalaft; Blanca Navarro Rodrigo; Hasna Bouchaab; Stephanie Tissot; George Coukos; Alexandre Harari; Michal Bassani-Sternberg. "A comprehensive proteogenomic pipeline for neoantigen discovery to advance personalized cancer immunotherapy." Nature biotechnology (2025).

Epitope: BALF2 - SRDELLHTRAASLLY
Chemical type: Peptide from protein
Sequence: SRDELLHTRAASLLY
Position: 185-199
Source molecule (GenBank): P0CAP6.1
Assay category: TCell
Result: Positive
Host: M 50
Cell type: T cell CD4+
Tissue: liver
Culture conditions: Direct Ex Vivo

Epitope: BALF5 - SFDDGVDL
Chemical type: Peptide from protein
Sequence: SFDDGVDL
Position: 599-606
Source molecule (GenBank): P03211.1
Assay category: TCell
Result: Positive
Host: M 50
Cell type: T cell CD8+
Tissue: liver
Culture conditions: Direct Ex Vivo

Epitope: EBNA-3A - RYSESGQFHAF
Chemical type: Peptide from protein
Sequence: RYSESGQFHAF
Position: 291-301
Source molecule (GenBank): P03209.1
Assay category: TCell
Result: Positive
Host: M 50
Cell type: T cell CD8+
Tissue: liver
Culture conditions: Direct Ex Vivo

Epitope: EBNA-3B - AYSSWMYSY
Chemical type: Peptide from protein
Sequence: AYSSWMYSY
Position: 176-184
Source molecule (GenBank): P12977.2
Assay category: TCell
Result: Positive
Host: M 50
Cell type: T cell CD8+
Tissue: liver
Culture conditions: Direct Ex Vivo

Epitope: ELOVL1 P149S - HSVLSWSWWW
Chemical type: Peptide, no natural source
Sequence: HSVLSWSWWW
Assay category: TCell
Result: Positive
Host: F 59
Cell type: T cell CD8+
Tissue: metastatic site
Culture conditions: Direct Ex Vivo

Epitope: FAT1 H1342Y - KSSTTRLYI
Chemical type: Peptide, no natural source
Sequence: KSSTTRLYI
Assay category: TCell
Result: Positive
Host: F 49
Cell type: T cell CD8+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: GEMIN5 H1002Y - EAVELLKSNYFY
Chemical type: Peptide, no natural source
Sequence: EAVELLKSNYFY
Assay category: TCell
Result: Positive
Host: M 68
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: GEMIN5 H1002Y - EAVELLKSNYFY
Chemical type: Peptide, no natural source
Sequence: EAVELLKSNYFY
Assay category: TCell
Result: Positive
Host: M 68
Cell type: Jurkat cell (T cell)
Tissue: blood
Culture conditions: Engineered

Epitope: GEMIN5 H1002Y - KVYEAVELLKSNYFY
Chemical type: Peptide, no natural source
Sequence: KVYEAVELLKSNYFY
Assay category: TCell
Result: Positive
Host: M 68
Cell type: T cell CD4+
Tissue: lymph node
Culture conditions: Direct Ex Vivo

Epitope: LMP-2A;LMP-2B - HYKEIPRLF
Chemical type: Peptide from protein
Sequence: HYKEIPRLF
Position: 472-480
Source molecule (GenBank): P03198.1
Assay category: TCell
Result: Positive
Host: M 50
Cell type: T cell CD8+
Tissue: liver
Culture conditions: Direct Ex Vivo

Epitope: LMP-2A;LMP-2B - LTAGFLIFL
Chemical type: Peptide from protein
Sequence: LTAGFLIFL
Position: 453-461
Source molecule (GenBank): P13285.1
Assay category: TCell
Result: Positive
Host: M 50
Cell type: T cell CD8+
Tissue: liver
Culture conditions: Direct Ex Vivo

Epitope: MAGEA1, TSYVKVLEY
Chemical type: Peptide from protein
Sequence: TSYVKVLEY
Position: 274-282
Source molecule (GenBank): P43355.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 211 142 268 252 311 1

Epitope: MAGEA1, SVFAHPRKL
Chemical type: Peptide from protein
Sequence: SVFAHPRKL
Position: 237-245
Source molecule (GenBank): P43356.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 211 142 268 252 311 1

Epitope: MAGEA3, QIMPKAGL
Chemical type: Peptide from protein
Sequence: QIMPKAGL
Position: 194-201
Source molecule (GenBank): P43357.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 211 142 268 252 311 1

Epitope: MAGEA12, SVFAHPRKL
Chemical type: Peptide from protein
Sequence: SVFAHPRKL
Position: 237-245
Source molecule (GenBank): P43356.1
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 211 142 268 252 311 1

Epitope: ENST00000435281.2 127-246, VIFLHPPK
Chemical type: Peptide from protein
Sequence: VIFLHPPK
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 211 142 268 252 311 1

Epitope: ENST00000668870.1 191-365, RISQVVNAK
Chemical type: Peptide from protein
Sequence: RISQVVNAK
Assay category: MhcLigandElution
Result: Positive
MHC allele types: 211 142 268 252 311 1